Citrus Sinensis ID: 005532
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 692 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV93 | 692 | ABC transporter F family | yes | no | 0.985 | 0.985 | 0.803 | 0.0 | |
| Q9FIB4 | 678 | ABC transporter F family | no | no | 0.971 | 0.991 | 0.780 | 0.0 | |
| O05519 | 642 | Uncharacterized ABC trans | yes | no | 0.799 | 0.861 | 0.381 | 1e-102 | |
| P0A9U3 | 530 | Uncharacterized ABC trans | N/A | no | 0.744 | 0.971 | 0.334 | 7e-79 | |
| P0A9U4 | 530 | Uncharacterized ABC trans | yes | no | 0.744 | 0.971 | 0.334 | 7e-79 | |
| P0A9U5 | 530 | Uncharacterized ABC trans | N/A | no | 0.744 | 0.971 | 0.334 | 7e-79 | |
| O34512 | 518 | Uncharacterized ABC trans | no | no | 0.723 | 0.967 | 0.339 | 2e-74 | |
| P63389 | 637 | Uncharacterized ABC trans | N/A | no | 0.783 | 0.850 | 0.310 | 1e-72 | |
| P63390 | 637 | Uncharacterized ABC trans | N/A | no | 0.783 | 0.850 | 0.310 | 1e-72 | |
| Q8T6B7 | 593 | ABC transporter F family | yes | no | 0.806 | 0.940 | 0.317 | 1e-71 |
| >sp|Q9LV93|AB5F_ARATH ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/686 (80%), Positives = 613/686 (89%), Gaps = 4/686 (0%)
Query: 7 TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDV 66
+ +LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++
Sbjct: 9 SLDLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEI 65
Query: 67 ESLFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
ESLFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEK
Sbjct: 66 ESLFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEK 125
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
VGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+A
Sbjct: 126 VGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTA 185
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
FKEEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPE
Sbjct: 186 FKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPE 245
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ 305
LGF +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQ
Sbjct: 246 LGFAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQ 305
Query: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE 365
DVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++
Sbjct: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKD 365
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
I+ TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV
Sbjct: 366 IDSTKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVV 425
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGE
Sbjct: 426 NVKNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGE 485
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
HNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLS
Sbjct: 486 HNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLS 545
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605
GGEKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQ
Sbjct: 546 GGEKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQ 605
Query: 606 IVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKE 665
IVNRV+EV+ L+DYAGDYNYYLEKNLDAR KELEREAELEE+APK+KAKSKMSKAEKE
Sbjct: 606 IVNRVIEVEDGCLEDYAGDYNYYLEKNLDARTKELEREAELEEKAPKVKAKSKMSKAEKE 665
Query: 666 ARKKQKMQAFQAAKQKSKGSKNAKRW 691
ARKKQKMQAFQ AKQKSK SKN+KRW
Sbjct: 666 ARKKQKMQAFQQAKQKSKASKNSKRW 691
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB4|AB2F_ARATH ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1039 bits (2687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/696 (78%), Positives = 606/696 (87%), Gaps = 24/696 (3%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQR---PRITCQVSAATVE 55
M +TT + NLRS+FF T FT L+ R P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFT-----NTITCPTLFTFKLSSVSNPRRVFPNIRAHVSAAS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKD
Sbjct: 54 ------SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
AK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 HAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+Q
Sbjct: 282 EWLEGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YAAWEKQQ+EIE TKDLI+RL AGANSGRASSAEKKLE+LQEEE IEKPFQRKQMKIRFP
Sbjct: 342 YAAWEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFP 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVIT
Sbjct: 522 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVIT 581
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKA 655
VSHDRYF+KQIVNRV+EV+ L DYAGDYNY+LEKN++AR +ELEREAELEE+APK+KA
Sbjct: 582 VSHDRYFIKQIVNRVIEVRDGGLMDYAGDYNYFLEKNVEARARELEREAELEEKAPKVKA 641
Query: 656 KSKMSKAEKEARKKQKMQAFQAAKQKSKGSKNAKRW 691
KSKMSKAE+EARKKQKM+AFQA+K+KSK SKNAKRW
Sbjct: 642 KSKMSKAEREARKKQKMKAFQASKKKSKSSKNAKRW 677
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O05519|YDIF_BACSU Uncharacterized ABC transporter ATP-binding protein YdiF OS=Bacillus subtilis (strain 168) GN=ydiF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 373 bits (958), Expect = e-102, Method: Compositional matrix adjust.
Identities = 217/569 (38%), Positives = 335/569 (58%), Gaps = 16/569 (2%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SKS+ T+L ++ EV+ +++ +VG NGAGK+T L+IIAGQ + G +IK
Sbjct: 4 LQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--AVDDMDLMGR 215
K ++ + +L+Q + T++EE ++ F +E+ +A+E A D +
Sbjct: 64 K-DITMGYLAQHTGLDSKLTIKEELLTVFDH----LKAMEKEMRAMEEKMAAADPGELES 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++ +D LQ++ + +A V ++ LGF+ D V S S G + R++LGK+LL
Sbjct: 119 IMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
PDLL+LDEPTNHLD+DT+ WLE YL ++I+SHDR FLD++ ++ E S+
Sbjct: 179 TQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESK 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR-LGAGANSGRASSAEKKLER 394
Y GNYS Y+ +KAA E +EKQQ EI + +D ++R L + + RA S K+LER
Sbjct: 239 KYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLER 298
Query: 395 LQEEEQIEKPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEK 452
+ + + KP K F +SG V+ +++L YE++ L + + RGE
Sbjct: 299 M---DVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGES 355
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
A++GPNG GKSTLLK ++ KP G + G NV Y++Q QAE L K VL+ +
Sbjct: 356 AALVGPNGIGKSTLLKTLIDTLKPDQGTISYGS-NVSVGYYDQEQAE-LTSSKRVLDELW 413
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
+ +I+ LG F D + + V LSGGEKARLA K M++ + L+LDEPTN
Sbjct: 414 DEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLALAKLMLQKANFLILDEPTN 473
Query: 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632
HLD+ SKE+LE A+ +Y GT++ VSHDRYF+ +I RV+E+ S++++Y GDY+YY EK
Sbjct: 474 HLDLDSKEVLENALIDYPGTLLFVSHDRYFINRIATRVLELSSSHIEEYLGDYDYYTEKK 533
Query: 633 LDAREKELEREAELEERAP-KIKAKSKMS 660
+ E E + E ++ P +K+ SK S
Sbjct: 534 TEQLELEKMNQQEETDKTPATVKSDSKRS 562
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|P0A9U3|YBIT_ECOLI Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli (strain K12) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 178/532 (33%), Positives = 300/532 (56%), Gaps = 17/532 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y YL
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYL 524
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9U4|YBIT_ECOL6 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 178/532 (33%), Positives = 300/532 (56%), Gaps = 17/532 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y YL
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYL 524
|
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) |
| >sp|P0A9U5|YBIT_ECO57 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 178/532 (33%), Positives = 300/532 (56%), Gaps = 17/532 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
DD ++ +LGR F D + + +LSGGEK R+ F K M++ +L++DEPTNHLD+
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKLMMQKPNILIMDEPTNHLDME 472
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629
S E L A+ Y+GT+I VSHDR FV + R++E+ + D++G+Y YL
Sbjct: 473 SIESLNMALELYQGTLIFVSHDREFVSSLATRILEITPERVIDFSGNYEDYL 524
|
Escherichia coli O157:H7 (taxid: 83334) |
| >sp|O34512|YFMM_BACSU Uncharacterized ABC transporter ATP-binding protein YfmM OS=Bacillus subtilis (strain 168) GN=yfmM PE=3 SV=2 | Back alignment and function description |
|---|
Score = 280 bits (717), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 174/512 (33%), Positives = 285/512 (55%), Gaps = 11/512 (2%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S + ++++S + + +V++ + KGE VGL+G NG GK+T + II G+ EPD G V
Sbjct: 2 SILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVE 61
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K N+++ +L Q + +++R+ AF + ++ + + A D D + +
Sbjct: 62 WSK-NVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEA--DPDELEK 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
LL+E ++Q + +D+KV ++ LG + +R V S G + ++ L K+LL
Sbjct: 119 LLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
+ P++LLLDEPTN+LD IEWL+ YL + + ++ISHD FL+ + I E
Sbjct: 179 EKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELT 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS-GRASSAEKKLER 394
Y G+Y Q++ + AA++KQQ+E+ + KD + R A ++ A S +KKL++
Sbjct: 239 RYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDK 298
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
+ + IE ++ + + F SG+ + K+L GY D L NL +ERG+K A
Sbjct: 299 M---DMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGY-DSPLSRPLNLRMERGQKIA 354
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
+ G NG GK+TLLK ++G +P G V GEH + YFEQ E + T +E V
Sbjct: 355 LYGANGIGKTTLLKSLLGEIQPLEGSVERGEH-IYTGYFEQEVKET--NNNTCIEEVWSE 411
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ +I+ L +C ++ +VS+LSGGEKA++ CK + + LLVLDEPTNHL
Sbjct: 412 FPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEKAKVRLCKLINSETNLLVLDEPTNHL 471
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQI 606
D +KE L+ A+ EYKG+++ +SH+ F I
Sbjct: 472 DADAKEELKRALKEYKGSILLISHEPDFYMDI 503
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P63389|YHES_ECOLI Uncharacterized ABC transporter ATP-binding protein YheS OS=Escherichia coli (strain K12) GN=yheS PE=1 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/566 (31%), Positives = 299/566 (52%), Gaps = 24/566 (4%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ S ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGS-WQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E ++ +L + +D + + + D
Sbjct: 70 NQETP-ALPQAALEYVIDGDREYRQLEAQLHDANER-----NDGHAIATIHGKLD----- 118
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ ++ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 119 --AIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF + R PE ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---RFSFRAPE--SLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + + YF Q+Q E L D++ ++ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ LG F+ D + + SGGEKARL + + LL+LDEPTNHLD+ ++ L
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELERE 643
EA+ E++G ++ VSHDR+ ++ + + V ++ + GD Y + D +++E + +
Sbjct: 471 EALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWLSDVQKQENQTD 530
Query: 644 AELEERAPKIKAKSKMSKAEKEARKK 669
+E A +A+ + E E R +
Sbjct: 531 EAPKENANSAQARKDQKRREAELRAQ 556
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P63390|YHES_ECO57 Uncharacterized ABC transporter ATP-binding protein YheS OS=Escherichia coli O157:H7 GN=yheS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 176/566 (31%), Positives = 299/566 (52%), Gaps = 24/566 (4%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ S ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGS-WQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E ++ +L + +D + + + D
Sbjct: 70 NQETP-ALPQAALEYVIDGDREYRQLEAQLHDANER-----NDGHAIATIHGKLD----- 118
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ ++ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 119 --AIDAWSIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSMFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF + R PE ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---RFSFRAPE--SLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + + YF Q+Q E L D++ ++ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEYLRADESPIQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ LG F+ D + + SGGEKARL + + LL+LDEPTNHLD+ ++ L
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELERE 643
EA+ E++G ++ VSHDR+ ++ + + V ++ + GD Y + D +++E + +
Sbjct: 471 EALIEFEGALVVVSHDRHLLRSTTDDLYLVHDRKVEPFDGDLEDYQQWLSDVQKQENQTD 530
Query: 644 AELEERAPKIKAKSKMSKAEKEARKK 669
+E A +A+ + E E R +
Sbjct: 531 EAPKENANSAQARKDQKRREAELRAQ 556
|
Escherichia coli O157:H7 (taxid: 83334) |
| >sp|Q8T6B7|ABCF2_DICDI ABC transporter F family member 2 OS=Dictyostelium discoideum GN=abcF2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 271 bits (693), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 192/604 (31%), Positives = 296/604 (49%), Gaps = 46/604 (7%)
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSI---SSGVKLENISKSYKGVTVLKD 115
+ SDVE D+F+ + N + TGA + S VK+E ++ ++ G +L D
Sbjct: 15 VTPPTSDVED---EVQDKFKEMRL-NAFTATGALASKESSRDVKIEQVTLTFHGKELLSD 70
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
T E+ G + GL+G NG GK+T + +A +E P ++ I LS+E S
Sbjct: 71 TTVEINFGRRYGLIGQNGCGKSTFFQCLAVRELP-------IPEHIDIFHLSEEAHPS-E 122
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-- 233
RT + + ++E++ LE + + L D ++ L+ NLD
Sbjct: 123 RTALQSVIDDAEKEVKRLEVLEERLLEEQGPESE-----ELFDVYERLE------NLDPT 171
Query: 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD 293
T + S+++ LGFT+ + S GW+MR+SL K L P LLLLDEPTNHLDL
Sbjct: 172 TFVPRASEILIGLGFTSQTMLKKTKDLSGGWRMRVSLAKALFIKPTLLLLDEPTNHLDLG 231
Query: 294 TIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIE 353
WLE YL D ++IISH + FL+ +CT I+ + Y GNY +V KA
Sbjct: 232 ACVWLEDYLANYDRSLIIISHSQDFLNAVCTNIIHMTQSKLKYYGGNYDNFVKTKAELEV 291
Query: 354 SQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQIEKPFQRKQMKI 412
+Q A+ KQQ EI K I G +N R S +K +++++E +E+ + K
Sbjct: 292 NQMKAYHKQQEEIAHIKSFIASCGTYSNLVRQGKSKQKIIDKMEEAGLVERVQEDKIFNF 351
Query: 413 RFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
FP G ++ N+ F Y E +L+ +L I+ + A++GPNG GKSTLLKL
Sbjct: 352 SFPPCGELAPPIMHFDNVTFSYSGKEADVLYRNLDLAIDLDSRIALVGPNGAGKSTLLKL 411
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV-------AEAAEDWRIDD 522
++G P G + H + Y Q+ E LDL T L+ V + E+WR +
Sbjct: 412 MVGQISPTQGFIKKHSHLKMARY-HQHAHEVLDLTATPLDFVRSKFAHMNKDTEEWRRE- 469
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+GR + +S G K+RL FC ++ LL+LDEPTNHLD+ + L
Sbjct: 470 ----IGRFGVTGKAQTEAIGCMSDGIKSRLIFCLMALENPHLLLLDEPTNHLDMECIDSL 525
Query: 583 EEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELER 642
AI+ + G +I VSHD + Q+ + + +AGD Y + +L A+ ++L +
Sbjct: 526 ALAINSFPGGMILVSHDFRLISQVAKEIWVCDNKTITKWAGDITSY-KNHLKAQMRDLTK 584
Query: 643 EAEL 646
+ L
Sbjct: 585 QGAL 588
|
Dictyostelium discoideum (taxid: 44689) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 692 | ||||||
| 224093878 | 635 | ABC transporter family protein [Populus | 0.916 | 0.998 | 0.870 | 0.0 | |
| 357464427 | 700 | ABC transporter F family member [Medicag | 0.946 | 0.935 | 0.820 | 0.0 | |
| 225438549 | 718 | PREDICTED: ABC transporter F family memb | 0.998 | 0.962 | 0.786 | 0.0 | |
| 297797507 | 694 | ATGCN5 [Arabidopsis lyrata subsp. lyrata | 0.988 | 0.985 | 0.810 | 0.0 | |
| 15912315 | 692 | AT5g64840/MXK3_6 [Arabidopsis thaliana] | 0.985 | 0.985 | 0.803 | 0.0 | |
| 15238261 | 692 | ABC transporter F family member 5 [Arabi | 0.985 | 0.985 | 0.803 | 0.0 | |
| 449448414 | 714 | PREDICTED: ABC transporter F family memb | 0.995 | 0.964 | 0.788 | 0.0 | |
| 356509032 | 696 | PREDICTED: ABC transporter F family memb | 0.969 | 0.964 | 0.801 | 0.0 | |
| 356516301 | 691 | PREDICTED: ABC transporter F family memb | 0.965 | 0.966 | 0.809 | 0.0 | |
| 297811095 | 678 | hypothetical protein ARALYDRAFT_487818 [ | 0.971 | 0.991 | 0.784 | 0.0 |
| >gi|224093878|ref|XP_002310031.1| ABC transporter family protein [Populus trichocarpa] gi|222852934|gb|EEE90481.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1129 bits (2919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/634 (87%), Positives = 601/634 (94%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
S A +++D+ESLFSS++D ++K SNKQSN GAS ISSG+KLENISKSYKGVTVLKDVT
Sbjct: 1 SGADSKTDIESLFSSNSDVEFDRKRSNKQSNGGASGISSGIKLENISKSYKGVTVLKDVT 60
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
WEVKKGEKVGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK+NMKIAFLSQEFEVSMSRT
Sbjct: 61 WEVKKGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKANMKIAFLSQEFEVSMSRT 120
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
V+EEFMSAFKEEMEIA +LE+VQKA+E AV+D+DLMGRLLDEFDLLQR+AQAV+LD +DA
Sbjct: 121 VKEEFMSAFKEEMEIAERLEKVQKAIEGAVEDLDLMGRLLDEFDLLQRRAQAVDLDEVDA 180
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 297
K+SKLMPELGF+ +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW
Sbjct: 181 KISKLMPELGFSPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 240
Query: 298 LEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYA 357
LEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W+E+Q A
Sbjct: 241 LEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEWVEAQLA 300
Query: 358 AWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPER 417
AWEKQQ+EIE T++LI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQ KQMKIRFPER
Sbjct: 301 AWEKQQKEIEHTRELISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQHKQMKIRFPER 360
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
GRSGRSVV I NLEFG+ED++LFN+ NL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 361 GRSGRSVVAINNLEFGFEDKVLFNKTNLMIERGEKIAIIGPNGCGKSTLLKLIMGLEKPT 420
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
GG++++GEHNVLPNYFEQNQAEALDLDKTV++TV E AEDWR+DDIKGLLGRCNFKADML
Sbjct: 421 GGQIMVGEHNVLPNYFEQNQAEALDLDKTVIQTVEEVAEDWRLDDIKGLLGRCNFKADML 480
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVS 597
DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY GTVITVS
Sbjct: 481 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYSGTVITVS 540
Query: 598 HDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKS 657
HDRYF+KQIVNRVVEVK LQDYAGDYNYYLEKNLDAREKELEREAELE++APK+KAKS
Sbjct: 541 HDRYFIKQIVNRVVEVKDDKLQDYAGDYNYYLEKNLDAREKELEREAELEDKAPKVKAKS 600
Query: 658 KMSKAEKEARKKQKMQAFQAAKQKSKGSKNAKRW 691
KMSKAEKEARKKQKM+AFQAAKQKSKGSKNAKRW
Sbjct: 601 KMSKAEKEARKKQKMKAFQAAKQKSKGSKNAKRW 634
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357464427|ref|XP_003602495.1| ABC transporter F family member [Medicago truncatula] gi|355491543|gb|AES72746.1| ABC transporter F family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 543/662 (82%), Positives = 609/662 (91%), Gaps = 7/662 (1%)
Query: 32 TNSLNFTKKQRPRITCQVSA-ATVEKKSIAKAQSDVESLFS-SSADEFENKKYSNKQSNT 89
TN F ++ T ++SA A V++ S+ + D+ESLF+ +SADE ++ +NKQSNT
Sbjct: 43 TNPNRFFSSKKLNHTSRLSAVAAVDETSVE--EDDIESLFTDTSADE---RRGNNKQSNT 97
Query: 90 GASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
GASS+SSGVKLENI K+YKGVTVLK+V WEVKKGEKVGLVGVNGAGKTTQ+RIIAG EEP
Sbjct: 98 GASSVSSGVKLENIRKTYKGVTVLKEVNWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEP 157
Query: 150 DSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
DSGNVIKAK NMKIAFLSQEFEVS SRTVREEFMSAFKEEME+AGKLE+VQKALE +V+D
Sbjct: 158 DSGNVIKAKPNMKIAFLSQEFEVSQSRTVREEFMSAFKEEMEVAGKLEKVQKALEGSVND 217
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
++LMGRLLDEFDLLQR+AQAVNLD +D+K+SKLMPELGF +D DRLVASFS GWQMRM
Sbjct: 218 LELMGRLLDEFDLLQRRAQAVNLDIVDSKISKLMPELGFGVEDSDRLVASFSGGWQMRMC 277
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
LGKILLQ+PDLLLLDEPTNHLDLDTIEWLE YL +QDVPMVIISHDRAFLDQLCTKIVET
Sbjct: 278 LGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNRQDVPMVIISHDRAFLDQLCTKIVET 337
Query: 330 EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAE 389
+MGVSRT+EGNYSQY+L KA WIE+QYAAWEKQQ+EIEQT++LI+RLGAGA+SGRAS+AE
Sbjct: 338 DMGVSRTFEGNYSQYILSKATWIETQYAAWEKQQKEIEQTRELISRLGAGASSGRASTAE 397
Query: 390 KKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIER 449
KKLERL EE +EKPF+RKQMKIRFP RG SGRSVVT++NL+FG+ED+ LFN+ANLTIER
Sbjct: 398 KKLERLLGEELVEKPFERKQMKIRFPVRGSSGRSVVTVRNLDFGFEDKKLFNKANLTIER 457
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLE 509
GEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN+LPNYFEQNQAEALDL+KTVLE
Sbjct: 458 GEKIAILGPNGCGKSTLLKLIMGLEKPISGEVILGEHNILPNYFEQNQAEALDLEKTVLE 517
Query: 510 TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
TV EAAEDWR DDIKGLLGRCNFK+DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE
Sbjct: 518 TVEEAAEDWRSDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 577
Query: 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629
PTNHLDIPSKEMLEEAI+EY+GTVITVSHDRYF+KQIVNRV+EVK +QDYAGDYNYYL
Sbjct: 578 PTNHLDIPSKEMLEEAITEYEGTVITVSHDRYFIKQIVNRVIEVKDGTVQDYAGDYNYYL 637
Query: 630 EKNLDAREKELEREAELEERAPKIKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGSKNAK 689
EKNLDAREKELER+AEL+++APK+KAKSKMSKAEKEARKKQKMQAFQ AKQKSKG+KN+K
Sbjct: 638 EKNLDAREKELERQAELDDKAPKLKAKSKMSKAEKEARKKQKMQAFQQAKQKSKGAKNSK 697
Query: 690 RW 691
RW
Sbjct: 698 RW 699
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438549|ref|XP_002279804.1| PREDICTED: ABC transporter F family member 5 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1100 bits (2845), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/717 (78%), Positives = 623/717 (86%), Gaps = 26/717 (3%)
Query: 1 MDVTT--TTTNLRSSFFST----------LQPRFTPF-------ASAKSFTNSLNFTK-- 39
MD+ T +LRSSFF+ L+P F P AS S T S + K
Sbjct: 1 MDLATKLQCIDLRSSFFTGSALLDARKTGLRPHFRPHTRSIPISASTHSITGSNSSIKTS 60
Query: 40 ---KQRPRITCQVSAATVEKKSIAKAQS--DVESLFSSSADEFENKKYSNKQSNTGASSI 94
R R + S A S+A+ S D+ESLFS+++ + +K NKQSN+GASSI
Sbjct: 61 ALFNSRTRSSMVSSKAVAMDTSVAETMSREDIESLFSNNSVDEAYQKRVNKQSNSGASSI 120
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SSGV+LEN+SK YKGVTVLKDV+WEVKKGEKVGLVGVNGAGKTTQLRII G EEPDSGNV
Sbjct: 121 SSGVRLENVSKGYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIITGLEEPDSGNV 180
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
IKAK NMKIAFLSQEFEVS+SRTV+EEFMSAFKEEMEIA +LE+VQKA+ES+VDD++LMG
Sbjct: 181 IKAKMNMKIAFLSQEFEVSLSRTVKEEFMSAFKEEMEIAARLEKVQKAIESSVDDLELMG 240
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
RLLDE DLLQR+AQAV+LD +DAK+SKLMPELGF +D DRLVASFSSGWQMRMSLGKIL
Sbjct: 241 RLLDENDLLQRRAQAVDLDEVDAKISKLMPELGFAPEDSDRLVASFSSGWQMRMSLGKIL 300
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
LQ+PDLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVS
Sbjct: 301 LQEPDLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVS 360
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
RTYEGNYSQYV+ KA WIE+QYAAWEKQQ+EIE T+DLI+RL GANSGRAS+AEKKLE+
Sbjct: 361 RTYEGNYSQYVIAKATWIEAQYAAWEKQQKEIEHTRDLISRLSGGANSGRASTAEKKLEK 420
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
LQ+EEQI+KPFQ KQMKIRFPERG SGRSV+ IKNLEFGY D++LF +ANLTIERGEK A
Sbjct: 421 LQDEEQIDKPFQHKQMKIRFPERGVSGRSVLAIKNLEFGYGDKVLFKKANLTIERGEKIA 480
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
IIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHNVLPNYFEQNQAEALDLDKTVL+TV +
Sbjct: 481 IIGPNGCGKSTLLKLIMGLEKPIGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLQTVEDV 540
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
AE+W+IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL
Sbjct: 541 AENWKIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 600
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLD 634
DIP+KEMLEEAI+EYKGTV+TVSHDRYF+KQIVNRV+EVK NLQDYAGDYNYYLEKNLD
Sbjct: 601 DIPTKEMLEEAITEYKGTVVTVSHDRYFIKQIVNRVIEVKDGNLQDYAGDYNYYLEKNLD 660
Query: 635 AREKELEREAELEERAPKIKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGSKNAKRW 691
AR +ELEREAEL+E+APK+KAKSKMSKAEKEA KKQK QAFQAAK KSKG KNAKRW
Sbjct: 661 ARARELEREAELDEKAPKVKAKSKMSKAEKEAMKKQKRQAFQAAKAKSKGLKNAKRW 717
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797507|ref|XP_002866638.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] gi|297312473|gb|EFH42897.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1088 bits (2815), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 556/686 (81%), Positives = 613/686 (89%), Gaps = 2/686 (0%)
Query: 7 TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDV 66
+ +LRS+FF+ L+P +P S +S++ ++ I QVS ++E S+ + Q ++
Sbjct: 9 SLDLRSTFFTGLRPCPSPIPSNFIKISSISNPRRGISTIRAQVSTISLET-SVKERQDEI 67
Query: 67 ESLFSSSADEFENKKYSN-KQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
ESLFS E ++ + N K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEK
Sbjct: 68 ESLFSKPTSEQDSDRRRNGKNSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEK 127
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
VGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMKIAFLSQEFEVSMS+TVREEFMSA
Sbjct: 128 VGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKIAFLSQEFEVSMSKTVREEFMSA 187
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
FKEEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPE
Sbjct: 188 FKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPE 247
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ 305
LGF ++D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQ
Sbjct: 248 LGFASEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQ 307
Query: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE 365
DVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ+E
Sbjct: 308 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKE 367
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
I+ TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV
Sbjct: 368 IDSTKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVV 427
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+KN++FG+ED++LF +ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP GEV+LGE
Sbjct: 428 NVKNIDFGFEDKMLFKKANLAIERGEKIAIIGPNGCGKSTLLKLIMGLEKPMKGEVILGE 487
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
HNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLS
Sbjct: 488 HNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLS 547
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605
GGEKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQ
Sbjct: 548 GGEKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQ 607
Query: 606 IVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKE 665
IVNRV+EV+ L+DYAGDYNYYLEKNLDAR KELEREAELEE+APK+KAKSKMSKAEKE
Sbjct: 608 IVNRVIEVEDGCLEDYAGDYNYYLEKNLDARAKELEREAELEEKAPKVKAKSKMSKAEKE 667
Query: 666 ARKKQKMQAFQAAKQKSKGSKNAKRW 691
ARKKQKMQAFQ AKQKSK SKN+KRW
Sbjct: 668 ARKKQKMQAFQQAKQKSKASKNSKRW 693
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15912315|gb|AAL08291.1| AT5g64840/MXK3_6 [Arabidopsis thaliana] gi|23308219|gb|AAN18079.1| At5g64840/MXK3_6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/686 (80%), Positives = 613/686 (89%), Gaps = 4/686 (0%)
Query: 7 TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDV 66
+ +LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++
Sbjct: 9 SLDLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEI 65
Query: 67 ESLFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
ESLFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEK
Sbjct: 66 ESLFSKQPSQQDSDRKQNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEK 125
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
VGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+A
Sbjct: 126 VGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTA 185
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
FKEEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPE
Sbjct: 186 FKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPE 245
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ 305
LGF +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQ
Sbjct: 246 LGFAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQ 305
Query: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE 365
DVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++
Sbjct: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKD 365
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
I+ TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV
Sbjct: 366 IDSTKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVV 425
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGE
Sbjct: 426 NVKNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGE 485
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
HNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLS
Sbjct: 486 HNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLS 545
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605
GGEKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQ
Sbjct: 546 GGEKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQ 605
Query: 606 IVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKE 665
IVNRV+EV+ L+DYAGDYNYYLEKNLDAR KELEREAELEE+APK+KAKSKMSKAEKE
Sbjct: 606 IVNRVIEVEDGCLEDYAGDYNYYLEKNLDARTKELEREAELEEKAPKVKAKSKMSKAEKE 665
Query: 666 ARKKQKMQAFQAAKQKSKGSKNAKRW 691
ARKKQKMQAFQ AKQKSK SKN+KRW
Sbjct: 666 ARKKQKMQAFQQAKQKSKASKNSKRW 691
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238261|ref|NP_201289.1| ABC transporter F family member 5 [Arabidopsis thaliana] gi|75335535|sp|Q9LV93.1|AB5F_ARATH RecName: Full=ABC transporter F family member 5; Short=ABC transporter ABCF.5; Short=AtABCF5; AltName: Full=GCN20-type ATP-binding cassette protein GCN5 gi|8843748|dbj|BAA97296.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|110742654|dbj|BAE99239.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|332010577|gb|AED97960.1| ABC transporter F family member 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 551/686 (80%), Positives = 613/686 (89%), Gaps = 4/686 (0%)
Query: 7 TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDV 66
+ +LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++
Sbjct: 9 SLDLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEI 65
Query: 67 ESLFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
ESLFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEK
Sbjct: 66 ESLFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEK 125
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
VGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+A
Sbjct: 126 VGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTA 185
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
FKEEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPE
Sbjct: 186 FKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPE 245
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ 305
LGF +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQ
Sbjct: 246 LGFAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQ 305
Query: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE 365
DVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++
Sbjct: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKD 365
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
I+ TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV
Sbjct: 366 IDSTKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVV 425
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGE
Sbjct: 426 NVKNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGE 485
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
HNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLS
Sbjct: 486 HNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLS 545
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605
GGEKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQ
Sbjct: 546 GGEKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQ 605
Query: 606 IVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKE 665
IVNRV+EV+ L+DYAGDYNYYLEKNLDAR KELEREAELEE+APK+KAKSKMSKAEKE
Sbjct: 606 IVNRVIEVEDGCLEDYAGDYNYYLEKNLDARTKELEREAELEEKAPKVKAKSKMSKAEKE 665
Query: 666 ARKKQKMQAFQAAKQKSKGSKNAKRW 691
ARKKQKMQAFQ AKQKSK SKN+KRW
Sbjct: 666 ARKKQKMQAFQQAKQKSKASKNSKRW 691
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448414|ref|XP_004141961.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] gi|449519128|ref|XP_004166587.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 564/715 (78%), Positives = 624/715 (87%), Gaps = 26/715 (3%)
Query: 1 MDVTT--TTTNLRSSFFS---TLQPRFTPFASAKSFTN-------------SLNFTKKQR 42
MD+T +LRSSF + L R T F S++ + S+ +
Sbjct: 1 MDLTIKLHHLHLRSSFLTGSPLLDSRKTLFGSSQHHLSNRTVSQSIGGNFKSIRASSLPN 60
Query: 43 PR-ITCQVSAATVEKKSIAKAQS--DVESLFSS-SADEFENKKYSNKQSNTGASSISSGV 98
PR + ++ A VE S+A+ + D+ESL SS S EF+ K+ KQSN G S ISSGV
Sbjct: 61 PRRVNSRIEAVAVEA-SVAETSTKEDIESLLSSGSVGEFDGKRVF-KQSNAGDSRISSGV 118
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
KLEN+SKSYKG TVLK+V+WEVKKGEKVGLVGVNGAGKTTQ+RIIAG EEPDSGNV+KAK
Sbjct: 119 KLENVSKSYKGATVLKNVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVMKAK 178
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+NMKIAFLSQEFEVS+SRTVREEF+SAFKEEMEIA +LE+VQKALESAV+D+ LMGRLLD
Sbjct: 179 ANMKIAFLSQEFEVSLSRTVREEFLSAFKEEMEIATRLEKVQKALESAVEDLQLMGRLLD 238
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EFDLLQR+AQAV+LD +D KVSKL+PELGF+ +D DRLVASFS GWQMRMSLGKILLQ+P
Sbjct: 239 EFDLLQRRAQAVDLDEVDVKVSKLLPELGFSEEDSDRLVASFSGGWQMRMSLGKILLQEP 298
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRTYE
Sbjct: 299 DLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTYE 358
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYSQYV+ KA WIE+Q AAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQE
Sbjct: 359 GNYSQYVMSKAEWIEAQNAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEA 418
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
+ +EKPFQRKQMKIRFPERG+SGR+VV +KNLEFG+ED+ LFN+ANL IERGEK AI+GP
Sbjct: 419 DLVEKPFQRKQMKIRFPERGQSGRTVVAVKNLEFGFEDKQLFNKANLIIERGEKIAILGP 478
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NGCGKSTLLKLIMGLEKP+GGEVLLGEHNVLPNYFEQNQAEALDL+KTVLETV E AEDW
Sbjct: 479 NGCGKSTLLKLIMGLEKPKGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEVAEDW 538
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
RIDDIKGLLGRCNFK +MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS
Sbjct: 539 RIDDIKGLLGRCNFKTEMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 598
Query: 579 KEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREK 638
KEMLEEAI+EY GTVITVSHDRYF+KQIVNRV+EVK NLQDYAGDYNYYLEKNLDARE+
Sbjct: 599 KEMLEEAITEYSGTVITVSHDRYFIKQIVNRVIEVKEGNLQDYAGDYNYYLEKNLDARER 658
Query: 639 ELEREAELEERAPKIKAKSKMSKAEKEARKKQKMQAFQA--AKQKSKGSKNAKRW 691
ELEREAELEE+APK+KAKSKMSKAEKEARKKQK+QAFQ AK KSKG KNAKRW
Sbjct: 659 ELEREAELEEKAPKLKAKSKMSKAEKEARKKQKVQAFQQAKAKAKSKGLKNAKRW 713
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509032|ref|XP_003523256.1| PREDICTED: ABC transporter F family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1077 bits (2785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/684 (80%), Positives = 607/684 (88%), Gaps = 13/684 (1%)
Query: 11 RSSFFSTLQPRFTPFASAKS---FTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVE 67
+ S L PR + + +TN F+ RP ++A+ S+ + D+E
Sbjct: 22 KPSALRHLPPRVLSRTNTNTNLIYTN--RFSGPPRP------NSASSTGLSMITVEDDIE 73
Query: 68 SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
SLFS + E E + KQ + GAS ISSGVKLEN+ K+YKGVTVLKDV+WEVKKGEKVG
Sbjct: 74 SLFSETNSEEERR--VRKQPSIGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVG 131
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQ+RIIAG EEPD GNV+KAK+NMKIAFL+QEFEV+ SRTVREEFM+AFK
Sbjct: 132 LVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKANMKIAFLNQEFEVAPSRTVREEFMNAFK 191
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEME+AGKLE+VQKALE AV+D++LMGRLLDEFDLLQR+AQ VNLD +DAK+SKLMPELG
Sbjct: 192 EEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELG 251
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRM LGKILLQ+PDLLLLDEPTNHLDLDTIEWLE YL +QDV
Sbjct: 252 FAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDV 311
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQYV+ KAAWIE+QYAAWEKQQ+EIE
Sbjct: 312 PMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIE 371
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
QT+DLI+RLGAGANSGRASSAEKKLERLQEEE +EKPF+RKQMKIRFPERGRSGRSVV I
Sbjct: 372 QTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAI 431
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
NLEFG+ED+ LF +ANLTIERGEK AIIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHN
Sbjct: 432 NNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHN 491
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAEALDL+KTVLETV EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 492 VLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 551
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMVKPST+LVLDEPTNHLDIPSKEMLEEAI+EY+GTVITVSHDRYF+KQIV
Sbjct: 552 EKARLAFCKFMVKPSTMLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIV 611
Query: 608 NRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKEAR 667
NRV+E+K +QDYAGDY+YYLEKN DARE+ELEREAEL+ +APK+KAKSKMSKAEKEAR
Sbjct: 612 NRVIEIKDGTIQDYAGDYDYYLEKNFDARERELEREAELDSKAPKVKAKSKMSKAEKEAR 671
Query: 668 KKQKMQAFQAAKQKSKGSKNAKRW 691
KKQKMQAFQAAKQKSKG KNAKRW
Sbjct: 672 KKQKMQAFQAAKQKSKGVKNAKRW 695
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356516301|ref|XP_003526834.1| PREDICTED: ABC transporter F family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1063 bits (2750), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/682 (80%), Positives = 607/682 (89%), Gaps = 14/682 (2%)
Query: 11 RSSFFSTLQPR-FTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVESL 69
+ S L PR T + +TN F+ RP + S TVE D+ESL
Sbjct: 22 KPSVLRHLPPRILTKTNTNLIYTN--RFSGPSRPN-SASSSTITVE--------DDIESL 70
Query: 70 FSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLV 129
FS + E E + S KQ ++GAS ISSGVKLEN+ K+YKGVTVLKDV+WEVKKGEKVGLV
Sbjct: 71 FSETNSEEERR--SRKQPSSGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVGLV 128
Query: 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189
GVNGAGKTTQ+RIIAG EEPD GNV+KAK NM+IAFL+QEFEV++SRTVREEF SAFKEE
Sbjct: 129 GVNGAGKTTQMRIIAGLEEPDFGNVVKAKENMRIAFLNQEFEVALSRTVREEFTSAFKEE 188
Query: 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249
ME+AGKLE+VQKALE AV+D++LMGRLLDEFDLLQR+AQ VNLD +DAK+SKLMPELGF
Sbjct: 189 MEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELGFA 248
Query: 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPM 309
+D DRLVASFS GWQMRM LGKILLQ+PDLLLLDEPTNHLDLDTIEWLE YL +QDVPM
Sbjct: 249 PEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDVPM 308
Query: 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQT 369
VIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQYV+ KAAWIE+QYAAWEKQQ+EIE T
Sbjct: 309 VIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIEHT 368
Query: 370 KDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429
+DLI+RLGAGANSGRASSAEKKLERLQEEE +EKPF+RKQMKIRFPERGRSGRSVV I+N
Sbjct: 369 RDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAIQN 428
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
LEFG+ED+ LF +ANLTIERGEK AIIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHNVL
Sbjct: 429 LEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHNVL 488
Query: 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
PNYFEQNQAEALDL+KTVLETV EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK
Sbjct: 489 PNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 548
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNR 609
ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVITVSHDRYF+KQIVNR
Sbjct: 549 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNR 608
Query: 610 VVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKEARKK 669
V+E+K +QDYAGDY+YYLEKNLDARE+ELEREAEL+ +APK+KAKSKMSKAEKEARKK
Sbjct: 609 VIEIKDGTIQDYAGDYDYYLEKNLDARERELEREAELDSKAPKVKAKSKMSKAEKEARKK 668
Query: 670 QKMQAFQAAKQKSKGSKNAKRW 691
QKMQAFQAAKQKSKG KNAKRW
Sbjct: 669 QKMQAFQAAKQKSKGVKNAKRW 690
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811095|ref|XP_002873431.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] gi|297319268|gb|EFH49690.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1060 bits (2741), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 546/696 (78%), Positives = 614/696 (88%), Gaps = 24/696 (3%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFT---NSLNFTKKQRPRITCQVSAATVE 55
M +TT + NLRS+FF T P FT +S++ +++ P I Q SA +
Sbjct: 1 MGLTTNLHSLNLRSAFFFT-----NPLPCHTLFTFKLSSVSNPRREFPNIIAQASATS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S+++SLFS+ ++K KQSN GASSISSGV+LENISKSY+GVTVLKD
Sbjct: 54 ------SNSELDSLFST------DRKLIGKQSNNGASSISSGVRLENISKSYEGVTVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFMSAFKEEME+A KLER+QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMSAFKEEMEVARKLERLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
DAK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 DAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA W+E+Q
Sbjct: 282 EWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YA+WEKQQ+EIE TKDLI+RL GANSGRASSAEKKLE+LQEEEQIEKPFQRKQMKIRF
Sbjct: 342 YASWEKQQKEIEATKDLISRLSGGANSGRASSAEKKLEKLQEEEQIEKPFQRKQMKIRFL 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG+ED++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLGFGFEDKILFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEALDLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEALDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
MLDR+VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVIT
Sbjct: 522 MLDRRVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVIT 581
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKA 655
VSHDRYF+KQIVNRV+EV+ L DYAGDYNYYLEKN++AR +ELE+EAELEE+ PK+KA
Sbjct: 582 VSHDRYFIKQIVNRVIEVRDGGLMDYAGDYNYYLEKNVEARARELEKEAELEEKGPKVKA 641
Query: 656 KSKMSKAEKEARKKQKMQAFQAAKQKSKGSKNAKRW 691
KSKMSKAE+EARKKQKM+AFQA+K+KSK SKNAKRW
Sbjct: 642 KSKMSKAEREARKKQKMKAFQASKKKSKSSKNAKRW 677
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 692 | ||||||
| TAIR|locus:2177689 | 692 | ABCF5 "ATP-binding cassette F5 | 0.897 | 0.897 | 0.721 | 5.6e-235 | |
| TAIR|locus:2178168 | 678 | ABCF2 "ATP-binding cassette F2 | 0.890 | 0.908 | 0.703 | 3e-227 | |
| TIGR_CMR|GSU_0922 | 645 | GSU_0922 "ABC transporter, ATP | 0.758 | 0.813 | 0.352 | 2.3e-87 | |
| UNIPROTKB|Q81VE6 | 640 | BA_0262 "ABC transporter, ATP- | 0.764 | 0.826 | 0.337 | 1.1e-78 | |
| TIGR_CMR|BA_0262 | 640 | BA_0262 "ABC transporter, ATP- | 0.764 | 0.826 | 0.337 | 1.1e-78 | |
| TIGR_CMR|GSU_2093 | 545 | GSU_2093 "ABC transporter, ATP | 0.765 | 0.972 | 0.338 | 6.2e-78 | |
| TIGR_CMR|DET_0224 | 663 | DET_0224 "ABC transporter, ATP | 0.763 | 0.796 | 0.318 | 2.1e-77 | |
| TIGR_CMR|BA_0228 | 626 | BA_0228 "ABC transporter, ATP- | 0.758 | 0.838 | 0.317 | 1.1e-69 | |
| UNIPROTKB|P0A9U3 | 530 | ybiT "putative ATP-binding com | 0.702 | 0.916 | 0.305 | 1.8e-62 | |
| UNIPROTKB|Q9KRW4 | 530 | VC1520 "ABC transporter, ATP-b | 0.754 | 0.984 | 0.286 | 1.6e-61 |
| TAIR|locus:2177689 ABCF5 "ATP-binding cassette F5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2266 (802.7 bits), Expect = 5.6e-235, P = 5.6e-235
Identities = 451/625 (72%), Positives = 505/625 (80%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFEN-KKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXX 127
LFS + ++ +K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWE
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 XXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
AGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKI EPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RL PFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIV 607
EKARLAFCKFMV PSTLLVLDEPTNHLDIPSKEMLEEAI+EY+GTVI VSHDRYF+KQIV
Sbjct: 548 EKARLAFCKFMVTPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVIAVSHDRYFIKQIV 607
Query: 608 NRVVEVKGSNLQDYAGDYNYYLEKN 632
NRV+EV+ L+DYAGDYNYYLEKN
Sbjct: 608 NRVIEVEDGCLEDYAGDYNYYLEKN 632
|
|
| TAIR|locus:2178168 ABCF2 "ATP-binding cassette F2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2193 (777.0 bits), Expect = 3.0e-227, P = 3.0e-227
Identities = 446/634 (70%), Positives = 502/634 (79%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKS 58
M +TT + NLRS+FF T + K +S++ ++ P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFTNTITCPTLFTFK--LSSVSNPRRVFPNIRAHVSAAS----- 53
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTW 118
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKDVTW
Sbjct: 54 ---SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKDVTW 104
Query: 119 EXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E AGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM +TV
Sbjct: 105 EVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMGKTV 164
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++ AK
Sbjct: 165 KEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSIHAK 224
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWL 298
+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKI EPTNHLDLDTIEWL
Sbjct: 225 ISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTIEWL 284
Query: 299 EGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAA 358
EGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+QYAA
Sbjct: 285 EGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQYAA 344
Query: 359 WEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG 418
WEKQQ+EIE TKDLI+RL PFQRKQMKIRFPE G
Sbjct: 345 WEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFPECG 404
Query: 419 RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 405 LSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMR 464
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKADMLD
Sbjct: 465 GEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKADMLD 524
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598
RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI+EYKGTVITVSH
Sbjct: 525 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYKGTVITVSH 584
Query: 599 DRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632
DRYF+KQIVNRV+EV+ L DYAGDYNY+LEKN
Sbjct: 585 DRYFIKQIVNRVIEVRDGGLMDYAGDYNYFLEKN 618
|
|
| TIGR_CMR|GSU_0922 GSU_0922 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
Identities = 188/534 (35%), Positives = 298/534 (55%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK + G ++ ++ W AGK+T +RI+AG E SG +I A+
Sbjct: 4 LRKLSKDFAGTSLFAEIDWHLKKGERVGLVGENGAGKSTLMRIVAGLVEQTSGELIFARG 63
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+ +L Q+ V+ R + E M+A ++ + +L + LE+ D G L+
Sbjct: 64 -ATVGYLPQDGIVTRGRGLLAEAMTALEDLQSLERELHELTSRLENISHDAPEHGECLER 122
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ LQ + + +++A+ +++ LGFT D R FS GWQMR++L K+
Sbjct: 123 YGRLQEEFRLRGGYSMEAEACRVLDGLGFTTGDRQRDCGEFSGGWQMRIALAKLLLKKPN 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLD++ WLEGYL + ++++SHDR F+DQ+C +I E G Y
Sbjct: 183 VLLLDEPTNHLDIEARNWLEGYLQEYPHSVILVSHDRFFMDQVCHRITEVWNGTLTDYHC 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXX 399
+YS+Y+ + + + A +Q E+ + +D INR
Sbjct: 243 SYSRYLTAREERVAALLEAKRRQDEEVAKIEDFINRFRYKADKAALVQSRVKQLEKIERI 302
Query: 400 XXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPN 459
P +RK+++ RFP+ +SGR V+ +K + Y ++ + +LT+E+GE+ A++G N
Sbjct: 303 VL--PPERKKIRFRFPDPPKSGRIVLELKGVTKAYGSHVVLDGIDLTVEKGERIALVGHN 360
Query: 460 GCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV-AEAAED 517
G GKSTL+ ++ G KP +GGE + G HNV+ +YF Q+QA+ LD KT E + A+A D
Sbjct: 361 GAGKSTLMGVLAG--KPFQGGERIAG-HNVVADYFAQDQAQVLDGAKTAHEELLADAPFD 417
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ ++ +LG F D + ++V +LSGGE+ RLA K +++PS LL++DEPTNHLD+
Sbjct: 418 M-VPQLRDILGAFLFTGDDIHKRVEVLSGGERNRLALAKMLLRPSNLLLMDEPTNHLDLF 476
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
SKE+L +A+ + GTV+ VSHDR+F+ + RVVEV+G L Y GDY YYL K
Sbjct: 477 SKEVLLDALKTFAGTVVFVSHDRHFIDGLATRVVEVEGGRLTSYHGDYEYYLRK 530
|
|
| UNIPROTKB|Q81VE6 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 181/537 (33%), Positives = 283/537 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+I+ +LG F D + + VS LSGG+KARLA K M++ S LL+LDEPTNHL
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLALAKLMMQKSNLLILDEPTNHL 478
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
D+ SKE+LE A+ +Y GT++ VSHDRYF+ ++ V+E+ Q+Y GDY+YY+EK
Sbjct: 479 DLNSKEILENALIDYPGTLLFVSHDRYFINRVTTTVIELSTEGAQEYLGDYDYYVEK 535
|
|
| TIGR_CMR|BA_0262 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
Identities = 181/537 (33%), Positives = 283/537 (52%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+I+ +LG F D + + VS LSGG+KARLA K M++ S LL+LDEPTNHL
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLALAKLMMQKSNLLILDEPTNHL 478
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
D+ SKE+LE A+ +Y GT++ VSHDRYF+ ++ V+E+ Q+Y GDY+YY+EK
Sbjct: 479 DLNSKEILENALIDYPGTLLFVSHDRYFINRVTTTVIELSTEGAQEYLGDYDYYVEK 535
|
|
| TIGR_CMR|GSU_2093 GSU_2093 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 784 (281.0 bits), Expect = 6.2e-78, P = 6.2e-78
Identities = 183/541 (33%), Positives = 280/541 (51%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L NI+K + + +D +++ AGKTT RII G+EE D+G + A
Sbjct: 2 IHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCA 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K I + SQ+ RT EE M+ E + +A +L+ ++ A+ +DD D M LL
Sbjct: 62 KRT-SIGYFSQDVGEMAGRTALEEVMAVSAETVRLAAELKEMEAAMAEPMDD-DAMAALL 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+ + + + LD + ++ LG D D V SFS GW+MR++L I
Sbjct: 120 ERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVESFSGGWKMRIALAGILTLQ 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYL-GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
EPTNHLD+++I WLE +L G+ +++ SHDR F++++ T+I+E T
Sbjct: 180 PDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTT 239
Query: 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXX 396
Y GNY Y E+ E A+ ++QQ + + ++ I R
Sbjct: 240 YGGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKI 299
Query: 397 XXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNRANLTIERGE 451
P + + ++ F + RSG V L + ++ +F+ + I R
Sbjct: 300 DRIEI--PPEERVIRFEFNDPPRSGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQN 357
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K A++G NG GKST LK++ G +P G V LG NV YF Q+ E LD KTV ETV
Sbjct: 358 KIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGA-NVSLGYFSQHAMELLDPKKTVFETV 416
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
+A I I+ LLG F D +D+++ LSGGEK+R+ + +P LVLDEPT
Sbjct: 417 QDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEKSRVVLATLLARPLNFLVLDEPT 476
Query: 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
NHLDI S+E+L +A+ + GTV+ VSHDR+F++ +V+RV E+ ++ Y G+Y YYLEK
Sbjct: 477 NHLDIRSREILLDALQNFTGTVVLVSHDRHFLRLLVDRVFEIDHGEMRIYEGNYGYYLEK 536
Query: 632 N 632
+
Sbjct: 537 S 537
|
|
| TIGR_CMR|DET_0224 DET_0224 "ABC transporter, ATP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
Identities = 170/533 (31%), Positives = 274/533 (51%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++N+SKS+ ++ V +GKTT +IAG+ E D G +I
Sbjct: 2 LNIQNLSKSFGVRSLYTGVNLNIGARDRLALLGPNGSGKTTLFEMIAGRLEADEGKIILR 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ + +L Q+ + S + + + SA ++ K+ +Q L D + RL+
Sbjct: 62 RGTT-VGYLEQDIKPSSKQPLLKAVSSASDRLSSLSHKISLLQGELAEEKDGSE-NNRLM 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+E LQ +A+ + + ++ LGF D DR + FS GW MR L K+
Sbjct: 120 NELGELQHSFEALGGYNAEQEAKLILAGLGFKPVDFDRPLHEFSGGWLMRAELAKLLFLS 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTNHLDL++ W E YL + ++ SHDRAFL+ + TKI+ E +R Y
Sbjct: 180 PDILILDEPTNHLDLESTRWFESYLKQYSGSVLFTSHDRAFLNSIATKILSLEDQKARLY 239
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY Y+ E+ + + +QQ I++ I R
Sbjct: 240 SGNYDSYLRERELRLNQLESQARRQQELIDKETKFIERFRYKATKASQVQSRIKKLDKLS 299
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
P Q K++ FPE RSG V+ ++NL Y D +++ L + RG+K A++G
Sbjct: 300 AVAI--PRQTKKIHFNFPEPERSGHDVIKLRNLTKSYGDLVIYQGLELVLARGDKAALVG 357
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+TLLK++ G+ G LG NV YF Q E+L ++E + D
Sbjct: 358 PNGAGKTTLLKILAGVMPFDSGYRNLGA-NVNTAYFAQYYVESLSPANNLIEELETILPD 416
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++G+LG F D + +++S+LSGGEK RLA K ++KP+ L+++DEPTNHLDIP
Sbjct: 417 APEQQLRGMLGAFLFSGDDVKKRISVLSGGEKTRLAIAKMLLKPANLVLMDEPTNHLDIP 476
Query: 578 SKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630
++E+L +A+ YKGT+ ++HDR ++++ N+++EV+ ++ + GDY+ YLE
Sbjct: 477 AREILADALQAYKGTLCFITHDRTLIREVANKIIEVRNGKIRVFEGDYDAYLE 529
|
|
| TIGR_CMR|BA_0228 BA_0228 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
Identities = 171/539 (31%), Positives = 282/539 (52%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ N++KS+ G + ++++ E +GKTT +++ G E D+G I K
Sbjct: 6 VNNVTKSFGGNIIFENISLEIKNGERVGLVGRNGSGKTTIFQLLTGMESLDAG-AIHMKK 64
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+I ++Q + S TV E SAFK E E+ ++ ++K + + ++ +L++
Sbjct: 65 GTRIGHVAQIPKFDESMTVYEVLSSAFKIEKELEREMRTLEKDMAEE-QESSVLQKLMER 123
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ ++Q K + ++A + K+ L T + R S G Q ++SL +
Sbjct: 124 YGIIQEKFAFLGGYEIEANIMKVANGLQVT-ELFPRSFLELSGGEQTKVSLAYMLLQKPD 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLDL +EWLE +L + + +++ISHDR FLD++ TKI + E G Y
Sbjct: 183 LLLLDEPTNHLDLFAVEWLEQFLKEYNGTVMVISHDRYFLDEVVTKIFDLEDGEIHVYHT 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXX------XXXXXXXXX 393
NYS++V EK + ++ A+++QQ++I++ K+ I RL
Sbjct: 243 NYSRFVEEKEERLLQEFQAYQEQQKKIKKMKEAIKRLREWANQANPPNEGLHKRARSMER 302
Query: 394 XXXXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
P +RKQ+ ++F + RSG+ VV IK + G+ D LFN NL + E+
Sbjct: 303 ALERMQKLKKPILERKQIGLQFEGQDRSGKDVVVIKEVSKGFADHPLFNEVNLHVRFQER 362
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AI+G NG GK+TLLKL++ +P GE+ +G +V Y Q+ + D VLE
Sbjct: 363 AAIVGRNGTGKTTLLKLLLEEIEPDAGEIRIGS-SVKIGYLSQHAYGNMKSD--VLEAFR 419
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
E + + +L + F + +KV+ LSGGEK RL + M + L+LDEPTN
Sbjct: 420 EYVAVTE-GEARHILAKFLFYGPAVFKKVTQLSGGEKMRLRLAQLMYQDINFLILDEPTN 478
Query: 573 HLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
HLDI S+E+LEEA+ +Y GT++ VSHDRYF+ ++ + + L ++AG+Y + +K
Sbjct: 479 HLDIESREVLEEALEQYNGTILAVSHDRYFLNKLFEKTYWIDEHKLFEFAGNYAWARQK 537
|
|
| UNIPROTKB|P0A9U3 ybiT "putative ATP-binding component of a transport system" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
Identities = 152/497 (30%), Positives = 255/497 (51%)
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T ++I+ G EP GNV N +I L Q+ TV + + KE E+
Sbjct: 38 SGKSTFMKILGGDLEPTLGNV-SLDPNERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVK 96
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ +R+ E + +D G + + ++ K ++ + +A+ +L+ +G +
Sbjct: 97 QERDRIYALPEMSEED----GYKVADLEV---KYGEMDGYSAEARAGELLLGVGIPVEQH 149
Query: 254 DRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313
++ + GW++R+ L + EPTN+LD+DTI WLE L ++D M+IIS
Sbjct: 150 YGPMSEVAPGWKLRVLLAQALFADPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIIS 209
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
HDR FL+ +CT + + + G R Y GNY +Y+ E A K++ +I + + +
Sbjct: 210 HDRHFLNMVCTHMADLDYGELRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFV 269
Query: 374 NRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
+R R+ IRF + + R+ + ++ L G
Sbjct: 270 SRFSANASKSRQATSRARQIDKIKLEEVKAS-SRQNPFIRFEQDKKLFRNALEVEGLTKG 328
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
+++ LF NL +E GEK A++G NG GKSTLLK ++G +P G V E N Y+
Sbjct: 329 FDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYY 387
Query: 494 EQNQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
Q+ + D TV E +++ ++ + ++ +LGR F D + + +LSGGEK R+
Sbjct: 388 AQDHEYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRM 447
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVE 612
F K M++ +L++DEPTNHLD+ S E L A+ Y+GT+I VSHDR FV + R++E
Sbjct: 448 LFGKLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRILE 507
Query: 613 VKGSNLQDYAGDYNYYL 629
+ + D++G+Y YL
Sbjct: 508 ITPERVIDFSGNYEDYL 524
|
|
| UNIPROTKB|Q9KRW4 VC1520 "ABC transporter, ATP-binding protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 153/534 (28%), Positives = 268/534 (50%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ NI++ + + ++++ + GK+T ++I++G+ EP GNV
Sbjct: 2 ISTANITQQFGAKPLFENISVKFGEGNRYGLIGANGCGKSTFMKILSGELEPSGGNV-SY 60
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
N ++A L+Q+ TV + + KE ++ + +R+ AL ++ D M R+
Sbjct: 61 DPNERVAKLNQDQFAYEEFTVIDTVIMGHKELWKVKQERDRIY-ALPEMTEE-DGM-RVA 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
D L+ + ++ ++K +L+ +G + L++S + GW++R+ L +I
Sbjct: 118 D----LEVEFAEMDGYMAESKAGELLLAVGIPLEQHYGLMSSVAPGWKLRVLLAQILFAD 173
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTN+LD+DTI WLE L ++ M+IISHDR FL+ +CT + + + G R Y
Sbjct: 174 PDIMLLDEPTNNLDIDTIRWLEDTLNARNCTMIIISHDRHFLNSVCTHMADLDYGELRIY 233
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY +Y+ E + K++ +I + + + R
Sbjct: 234 PGNYDEYMTAATQARERLLSDNAKKKAQIAELQTFVARFSANASKAKQATSRARQIDKIK 293
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
R+ IRF + R+ + ++NL G+ D LF+ N E GE+ AIIG
Sbjct: 294 LDEVKAS-SRQNPFIRFEQSKELFRNALIVENLSQGF-DHDLFSNFNAIFEVGERVAIIG 351
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
NG GK+TLL + G+ +PR G E++ + Y+ Q+ A D ++E + + ++
Sbjct: 352 ENGVGKTTLLNTLAGVLEPRSGMYKWSENSNI-GYYAQDHAHEFAEDLNLMEWMGQWRQE 410
Query: 518 WRIDDI-KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+ + + LGR F D + + V +LSGGE+ R+ K M+ +L+LDEPTNH+D+
Sbjct: 411 GDDEQVVRSFLGRMLFGQDDIKKSVKVLSGGEQGRMLLGKLMMHKPNMLLLDEPTNHMDM 470
Query: 577 PSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630
S E L A+ +YKGT+ VSHDR FV + R++E++ + D+ G Y +L+
Sbjct: 471 ESIESLNNALEQYKGTLFFVSHDRVFVDSLATRIIEIRDGKITDFKGTYAEFLK 524
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9FIB4 | AB2F_ARATH | No assigned EC number | 0.7801 | 0.9710 | 0.9911 | no | no |
| Q8T6B7 | ABCF2_DICDI | No assigned EC number | 0.3178 | 0.8063 | 0.9409 | yes | no |
| Q9LV93 | AB5F_ARATH | No assigned EC number | 0.8032 | 0.9855 | 0.9855 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 692 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.0 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-111 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 1e-101 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-97 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 5e-95 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-80 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-68 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-57 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-56 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-43 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-35 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 4e-34 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 5e-34 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-33 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-33 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-33 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-33 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-32 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-31 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-31 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-30 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-30 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-30 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-30 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-30 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-29 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-29 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-29 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-28 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-28 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 8e-28 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 1e-27 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 5e-27 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 6e-27 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 9e-27 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-26 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-26 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 4e-26 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 5e-26 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 1e-25 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-25 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-25 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 3e-25 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-25 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 4e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-25 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-24 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-24 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-24 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-24 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-24 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 9e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-24 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 9e-24 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-23 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-23 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 7e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-22 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-22 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-22 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-22 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 2e-22 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 3e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-22 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 5e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-22 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 9e-22 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 1e-21 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-21 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-21 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-21 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-21 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 5e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 5e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 8e-21 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 8e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 9e-21 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 9e-21 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 9e-21 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-20 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-20 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-20 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-20 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-20 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-20 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-20 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-20 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-20 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 5e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-20 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 6e-20 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 7e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 9e-20 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-19 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-19 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-19 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-19 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-19 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 4e-19 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-19 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-19 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-19 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 6e-19 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 7e-19 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-18 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-18 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-18 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-18 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 1e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-18 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 2e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-18 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-18 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 2e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-18 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-18 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 3e-18 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-18 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 4e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 6e-18 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-18 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 6e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 8e-18 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-18 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 9e-18 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 9e-18 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-18 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 1e-17 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-17 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-17 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-17 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 2e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-17 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-17 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-17 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-17 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-17 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-17 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 4e-17 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 4e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 4e-17 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 4e-17 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-17 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 5e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-17 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-17 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 6e-17 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-17 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 7e-17 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-17 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 9e-17 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 9e-17 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-16 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-16 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 1e-16 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-16 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-16 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 3e-16 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 3e-16 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 4e-16 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 4e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 4e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-16 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 4e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-16 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 5e-16 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 7e-16 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-15 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-15 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 1e-15 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-15 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 2e-15 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 3e-15 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 4e-15 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-15 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-15 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 5e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 5e-15 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 5e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 5e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 6e-15 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 6e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 7e-15 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-15 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-15 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 7e-15 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 8e-15 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 9e-15 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 9e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-14 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-14 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 2e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 3e-14 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-14 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 3e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-14 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 5e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 5e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 5e-14 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 5e-14 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 6e-14 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-14 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 9e-14 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-13 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 1e-13 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-13 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-13 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-13 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 2e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-13 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-13 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 2e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-13 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-13 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-13 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 3e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-13 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-13 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 4e-13 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 4e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-13 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-13 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 5e-13 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-13 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-13 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 6e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 8e-13 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 8e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-13 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 9e-13 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-12 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-12 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-12 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 2e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-12 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 2e-12 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-12 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 3e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-12 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-12 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-12 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-12 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 3e-12 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 3e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 4e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 5e-12 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 5e-12 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 6e-12 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 6e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 7e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-12 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 8e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 9e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 9e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-11 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-11 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 1e-11 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 1e-11 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-11 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-11 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 2e-11 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-11 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 3e-11 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 4e-11 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 5e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 5e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 5e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 5e-11 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-11 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 6e-11 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 7e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 9e-11 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-10 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-10 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-10 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 1e-10 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-10 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-10 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-10 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 2e-10 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-10 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-10 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-10 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-10 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 4e-10 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 4e-10 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 4e-10 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 4e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-10 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 5e-10 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 5e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-10 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 5e-10 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 6e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 7e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 7e-10 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 7e-10 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-10 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 7e-10 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 8e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 8e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 9e-10 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 9e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 9e-10 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 9e-10 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-10 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-09 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 1e-09 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-09 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 1e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 2e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-09 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-09 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 2e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-09 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 3e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-09 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 4e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-09 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-09 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 5e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-09 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-09 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 6e-09 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 7e-09 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 7e-09 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 7e-09 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 8e-09 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 8e-09 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 9e-09 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 9e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-08 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-08 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-08 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-08 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-08 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 2e-08 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-08 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 2e-08 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 3e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 3e-08 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-08 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 3e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-08 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 4e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 5e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 5e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 7e-08 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 7e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-08 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-08 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-07 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 1e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 2e-07 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-07 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 2e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-07 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-07 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 4e-07 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-07 | |
| cd03278 | 197 | cd03278, ABC_SMC_barmotin, ATP-binding cassette do | 4e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 5e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 6e-07 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 6e-07 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 6e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 7e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 8e-07 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 8e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 8e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-07 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-07 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 9e-07 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 9e-07 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-06 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 1e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 1e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 1e-06 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 1e-06 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 1e-06 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-06 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 3e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 4e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-06 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 4e-06 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-06 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 5e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 6e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 6e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 6e-06 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 8e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 1e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-05 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-05 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 2e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-05 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 3e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 4e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 5e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 7e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 8e-05 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 8e-05 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 1e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-04 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-04 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 3e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-04 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-04 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-04 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 8e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-04 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 0.001 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.001 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.002 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.002 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.002 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.002 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.002 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.002 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.002 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.002 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 0.003 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.003 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.003 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 0.003 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.004 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.004 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 0.004 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.004 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.004 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.004 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.004 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.004 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 542 bits (1399), Expect = 0.0
Identities = 226/537 (42%), Positives = 338/537 (62%), Gaps = 19/537 (3%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
LEN+S +Y +L++V+ + GE++GLVG NGAGK+T L+I+AG+ EPDSG V + K
Sbjct: 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ +LSQE + +TV + + F E E+ +LE L A D +L+ L
Sbjct: 65 -GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL--ADPDDELLAELEA 121
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ L TL+A+ + + LGF +D R V+S S GW+ R++L + LL++P
Sbjct: 122 LLEELDG-------WTLEARAEEALLGLGFPDED--RPVSSLSGGWRRRVALARALLEEP 172
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDL++IEWLE YL + ++++SHDR FLD + T I+E + G Y+
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYK 232
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397
GNYS Y+ +KA + + AA+EKQQ+E+ + ++ I R A A+ + +A S K+LE+L+
Sbjct: 233 GNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEA 292
Query: 398 EEQIEKPFQR-KQMKIRF-PERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTA 454
E+P + K + RF P R G+ V+ +N+ GY+ RLL + I+RG++ A
Sbjct: 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIA 352
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
I+GPNG GKSTLLKL+ G P G V +GE V YF+Q++ E LD DKTVLE ++E
Sbjct: 353 IVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-TVKIGYFDQHRDE-LDPDKTVLEELSEG 410
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
D +++ LGR F + ++ V +LSGGEKARL K +++P LL+LDEPTNHL
Sbjct: 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHL 470
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
DI S E LEEA+ +++GTV+ VSHDRYF+ ++ R+ V+ ++++ G Y YLE+
Sbjct: 471 DIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 344 bits (885), Expect = e-111
Identities = 186/542 (34%), Positives = 300/542 (55%), Gaps = 48/542 (8%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGE--KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
ENIS VK G + GL+G NG GK+T ++I+ G EP +GNV
Sbjct: 18 ENIS---------------VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD- 61
Query: 159 SNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N ++ L Q+ FE TV + + E E+ + +R+ E + +D +
Sbjct: 62 PNERLGKLRQDQFAFE---EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVAD 118
Query: 216 LLDEFDLLQRKAQAVNLD--TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L +F +D T +A+ +L+ +G + L++ + GW++R+ L +
Sbjct: 119 LEVKF---------AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQA 169
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
L +PD+LLLDEPTN+LD++TI WLE L +++ M+IISHDR FL+ +CT + + + G
Sbjct: 170 LFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGE 229
Query: 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKL 392
R Y GNY +Y+ E A K++ +I + + ++R A A+ + A+S K++
Sbjct: 230 LRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQI 289
Query: 393 ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
++++ EE KP R+ IRF + + R+ + ++NL G+++ LF NL +E GE+
Sbjct: 290 DKIKLEEV--KPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGER 347
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AIIG NG GK+TLL+ ++G +P G V E N Y+ Q+ A + D T+ + ++
Sbjct: 348 LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NANIGYYAQDHAYDFENDLTLFDWMS 406
Query: 513 EAAEDWRI--DD---IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
+ WR DD ++G LGR F D + + V +LSGGEK R+ F K M++ +LV+
Sbjct: 407 Q----WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVM 462
Query: 568 DEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNY 627
DEPTNH+D+ S E L A+ +Y+GT+I VSHDR FV + R++E+ + D++G Y
Sbjct: 463 DEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEE 522
Query: 628 YL 629
YL
Sbjct: 523 YL 524
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 321 bits (825), Expect = e-101
Identities = 176/537 (32%), Positives = 289/537 (53%), Gaps = 22/537 (4%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+SK +LKD++ G K+G++G+NGAGK+T LRI+AG ++ +G A
Sbjct: 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-G 67
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+K+ +L QE ++ ++TVRE E + + + DMD LL E
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMD---ALLAEQ 124
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
LQ A + LD K+ M L D D V S G + R++L ++LL PD+
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD--VTKLSGGERRRVALCRLLLSKPDM 182
Query: 281 LLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
LLLDEPTNHLD +++ WLE +L Q+ P +V ++HDR FLD + I+E + G +E
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHL--QEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYS ++ +K +E + +Q+ +++ + + R A ++ + + E L +
Sbjct: 241 GNYSSWLEQKEKRLEQEEKEESARQKALKRELEWV-RSSPKARQAKSKARLARYEELLSQ 299
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
E ++ + +I P R G V+ +NL G+ D+LL + + + G +IGP
Sbjct: 300 EFQKRN---ETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGP 356
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NG GKSTL ++I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ +
Sbjct: 357 NGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDII 414
Query: 519 RIDDI----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
++ + +GR NFK +KV LSGGE+ R+ K + +L+LDEPTN L
Sbjct: 415 QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDL 474
Query: 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG-SNLQDYAGDYNYYLE 630
D+ + LEEA+ E+ G + +SHDR+F+ +I ++ +G S+++ + G+Y+ Y E
Sbjct: 475 DVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = 5e-97
Identities = 168/497 (33%), Positives = 267/497 (53%), Gaps = 20/497 (4%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LKD++ G K+G++G+NGAGK+T LRI+AG ++ G A +K+ +L QE +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQ 80
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ +TVRE E + + A D D L E LQ A +
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD---ALAAEQGELQEIIDAAD 137
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD+++ M L D V S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 138 AWDLDSQLEIAMDALRCPPWDAK--VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Query: 292 LDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKA 349
+++ WLE +L D P +V ++HDR FLD + I+E + G +EGNYS ++ +KA
Sbjct: 196 AESVAWLEQFL--HDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKA 253
Query: 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409
+ + +Q+ +++ + + R A ++ + + E L EE ++ +
Sbjct: 254 KRLAQEEKQEAARQKALKRELEWV-RQSPKARQAKSKARLARYEELLSEEYQKRN---ET 309
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+I P R G V+ +NL + DRLL + + ++ G IIGPNG GKSTL K+
Sbjct: 310 NEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKM 369
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KG 525
I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ + ++ + +
Sbjct: 370 ITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRA 427
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+GR NFK +KV +LSGGE+ RL K + + +L+LDEPTN LD+ + LEEA
Sbjct: 428 YVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEA 487
Query: 586 ISEYKGTVITVSHDRYF 602
+ E+ G + +SHDR+F
Sbjct: 488 LLEFPGCAVVISHDRWF 504
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 306 bits (786), Expect = 5e-95
Identities = 203/596 (34%), Positives = 318/596 (53%), Gaps = 58/596 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + S+ +L + ++ E+V LVG NGAGK+T ++I+ G+ D G +I
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ ++ +A L Q+ ++ TV + F++ EE A L+R D + L
Sbjct: 64 Q-DLIVARLQQDPPRNVEGTVYD-FVAEGIEE--QAEYLKRYHDISHLVETDP--SEKNL 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+E LQ + NL L+ ++++++ +LG D D ++S S GW + +LG+ L+ +
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGL---DPDAALSSLSGGWLRKAALGRALVSN 174
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
PD+LLLDEPTNHLD++TIEWLEG+L ++ ISHDR+F+ + T+IV+ + G +Y
Sbjct: 175 PDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234
Query: 338 EGNYSQYVLEKAAWI---ESQYAAWEKQ--QRE--IEQTKDLINRLGAGA----NSGRAS 386
GNY QY+LEK + E Q A ++++ Q E I Q G A N GR
Sbjct: 235 PGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ--------GIKARRTRNEGRV- 285
Query: 387 SAEKKL--ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
A K L ER + E + K++ E RSG+ V ++N+ + + + L +
Sbjct: 286 RALKALRRERSERREVMGT------AKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFS 339
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
++RG+K A+IGPNGCGK+TLLKL++G + G + G + YF+Q++AE LD +
Sbjct: 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE-LDPE 397
Query: 505 KTVLETVAEAAEDWRIDDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
KTV++ +AE ++ ++ G L F V LSGGE+ RL + +K
Sbjct: 398 KTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLK 457
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNR--VVEVKGSNL 618
PS LL+LDEPTN LD+ + E+LEE + Y+GTV+ VSHDR FV V + E G +
Sbjct: 458 PSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNG-KI 516
Query: 619 QDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAKS--KMSKAEKEARKKQKM 672
Y G Y+ DAR+ ++ L + P +K K KAE R +K+
Sbjct: 517 GRYVGGYH-------DARQ---QQAQYLALKQPAVKKKEEAAAPKAETVKRSSKKL 562
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 3e-80
Identities = 179/570 (31%), Positives = 301/570 (52%), Gaps = 25/570 (4%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ N ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E +++ L A + D G + + K
Sbjct: 70 NQE-TPALPQPALEYVIDGDRE-------YRQLEAQLHDANERND--GHAIA---TIHGK 116
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ T+ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF R PE + ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---HFSFRAPESLPN--PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + L YF Q+Q E L D++ L+ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ LG F+ D + + SGGEKARL + + LL+LDEPTNHLD+ ++ L
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELERE 643
EA+ +++G ++ VSHDR+ ++ + + V ++ + GD Y + D +++E + +
Sbjct: 471 EALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQWLSDVQKQENQTD 530
Query: 644 AELEERAPKIKAKSKMSKAEKEARKKQKMQ 673
+E A+++ + +EA + + Q
Sbjct: 531 EAPKENNAN-SAQARKDQKRREAELRTQTQ 559
|
Length = 638 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 236 bits (603), Expect = 6e-68
Identities = 165/564 (29%), Positives = 276/564 (48%), Gaps = 31/564 (5%)
Query: 82 YSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
Y N N G +I + +EN S S G ++ D + + G GLVG NG GKTT LR
Sbjct: 163 YVNHDGNGGGPAIKD-IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLR 221
Query: 142 IIAGQEEPDSGNVIKAKSNMKIAFLSQEF--------------EVSMSRTVREEF-MSAF 186
+A + N +I + QE ++ ++ + EE + A
Sbjct: 222 YMAMHA------IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQ 275
Query: 187 KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
+ E+E + + + A + VD D + + L+E + ++ + ++ T +A+ + ++ L
Sbjct: 276 QRELEFETETGKGKGANKDGVDK-DAVSQRLEE---IYKRLELIDAYTAEARAASILAGL 331
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD 306
FT + + +FS GW+MR++L + L +PDLLLLDEPTNHLDL + WLE YL K
Sbjct: 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP 391
Query: 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREI 366
+++SH R FL+ + T I+ TY+G+Y + + +++Q A+E +R
Sbjct: 392 KTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSR 451
Query: 367 EQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVV 425
+ I++ N+ RAS + +++ L ++ K FP R G ++
Sbjct: 452 SHMQAFIDKF--RYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPII 509
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + FGY LLF N I+ + A++GPNG GKST+LKLI G +P G V
Sbjct: 510 SFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V F Q+ + LDL L + ++ LG ++ + + L
Sbjct: 570 A-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 628
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604
SGG+K+R+AF K K +L+LDEP+NHLD+ + E L + + ++G V+ VSHD + +
Sbjct: 629 SGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLIS 688
Query: 605 QIVNRVVEVKGSNLQDYAGDYNYY 628
V+ + V + + G ++ Y
Sbjct: 689 GSVDELWVVSEGKVTPFHGTFHDY 712
|
Length = 718 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 204 bits (520), Expect = 1e-57
Identities = 101/313 (32%), Positives = 148/313 (47%), Gaps = 53/313 (16%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S++T++NL Y DR L +LT+ GE+ ++G NG GKSTLLK++ G +P GEV
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-------------IDDIKGLLGR 529
+ Y Q LD +KTVL+ V E + R D LL
Sbjct: 62 R-PKGLRVGYLSQEPP--LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 530 CNFKADMLD---------------------RKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
+ LD R VS LSGG + R+A + +++ LL+LD
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEEPDLLLLD 178
Query: 569 EPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628
EPTNHLD+ S E LE+ + Y GTVI VSHDRYF+ + ++E+ L Y G+Y+ Y
Sbjct: 179 EPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYSSY 238
Query: 629 LEKNLDAREKELEREAELEERAPK------------IKAKSKMSKAEKEARKKQKMQAFQ 676
LE + + L +EA E+ K A SK KA+ ++ +K++A
Sbjct: 239 LE----QKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARL 294
Query: 677 AAKQKSKGSKNAK 689
A ++ + K
Sbjct: 295 AEERPVEEGKPLA 307
|
Length = 530 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 188 bits (480), Expect = 1e-56
Identities = 73/191 (38%), Positives = 96/191 (50%), Gaps = 49/191 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y +LL +LTI G++ ++G NG GKSTLLKLI G +P G V G
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V YFEQ L
Sbjct: 61 -STVKIGYFEQ------------------------------------------------L 71
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604
SGGEK RLA K +++ LL+LDEPTNHLD+ S E LEEA+ EY GTVI VSHDRYF+
Sbjct: 72 SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLD 131
Query: 605 QIVNRVVEVKG 615
Q+ +++E++
Sbjct: 132 QVATKIIELED 142
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 4e-43
Identities = 117/564 (20%), Positives = 221/564 (39%), Gaps = 118/564 (20%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--- 150
+++EN++ + V ++DV++EV+ GE +G+VG +G+GK+T + G
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 151 -SGNVIKAKSNMKIAFLSQEFEVSMSRT--VREEFMSAFKEEMEIAGKLERVQKALESAV 207
SG VI ++ + ++ R + ++ M++ M I ++ +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS-FSSGWQM 266
+ + +AV +L+ ++G + S G +
Sbjct: 126 RA--------------EARKRAV----------ELLEQVGLPDPERRDRYPHQLSGGMRQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
R+ + L P LL+ DEPT LD+ T ++ L+ + + ++ I+HD + +L
Sbjct: 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
Query: 323 CTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382
++V V+ K +E+ + T+ L+ +
Sbjct: 222 ADRVV-----------------VMYKGEIVETGPTEEILSNPQHPYTRGLLAAV------ 258
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDR-LLF 440
P + IR P RG +++++NL Y R LF
Sbjct: 259 ---------------------PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 441 NRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
R + + GE ++G +G GKSTL +++ GL P G ++ ++
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357
Query: 491 NYFE------------QNQAEALDLDKTVLETVAEA-------AEDWRIDDIKGLLGRCN 531
E Q+ +L+ TV + +AE + R + LL
Sbjct: 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAIS 587
+ LDR LSGG++ R+A + + LL+LDEP + LD+ + +L++
Sbjct: 418 LPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQE 477
Query: 588 EYKGTVITVSHDRYFVKQIVNRVV 611
E T + +SHD V+ I +RV
Sbjct: 478 ELGLTYLFISHDLAVVRYIADRVA 501
|
Length = 539 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 3e-35
Identities = 91/282 (32%), Positives = 127/282 (45%), Gaps = 72/282 (25%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLE 509
G K ++G NG GKSTLL+++ G++K GE + Y Q LD KTV E
Sbjct: 31 GAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQE--PQLDPTKTVRE 87
Query: 510 TVAEAAEDWRIDDIKGLLGRCNF--------KADM---------------------LDRK 540
V E + IK L R N ADM LDRK
Sbjct: 88 NVEEGVAE-----IKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142
Query: 541 ----------------VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
V+ LSGGE+ R+A C+ ++ +L+LDEPTNHLD S LE+
Sbjct: 143 LEIAMDALRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ 202
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE----------KNLD 634
+ EY GTV+ V+HDRYF+ + ++E+ + G+Y+ +LE K
Sbjct: 203 HLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEES 262
Query: 635 AREKELEREAELEERAPKIK-AKSK--------MSKAEKEAR 667
AR+K L+RE E +PK + AKSK + E + R
Sbjct: 263 ARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQKR 304
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 4e-35
Identities = 62/178 (34%), Positives = 94/178 (52%), Gaps = 25/178 (14%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++NL GY R + + +L+IE GE I+GPNG GKSTLLK + GL KP GE+LL
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
++ +L + + V +A E + A + DR + LS
Sbjct: 61 KDL-------ASLSPKELARKIA-YVPQALELLGL-------------AHLADRPFNELS 99
Query: 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYKG-TVITVSHD 599
GGE+ R+ + + + +L+LDEPT+HLDI + E+LE ++ +G TV+ V HD
Sbjct: 100 GGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHD 157
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 4e-34
Identities = 61/195 (31%), Positives = 91/195 (46%), Gaps = 47/195 (24%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
I+NL F Y R + +LT++ GE A++GPNG GKSTLL+ I GL KP GE+L+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-- 543
++ E+ L R++
Sbjct: 61 KDIAKLPLEE-----------------------------------------LRRRIGYVP 79
Query: 544 -LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
LSGG++ R+A + ++ LL+LDEPT+ LD S+E L E + E TVI V+HD
Sbjct: 80 QLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHD 139
Query: 600 RYFVKQIVNRVVEVK 614
+ +RV+ +K
Sbjct: 140 PELAELAADRVIVLK 154
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 5e-34
Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 51/257 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + + K++ ++ GE++ ++G NG GKTT LR + G+ EPDSG +K
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKW 378
Query: 158 KSNMKIAFLSQ----EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
N I + +Q +FE ++ ++MS +++E E AV +
Sbjct: 379 SENANIGYYAQDHAYDFENDLTLF---DWMSQWRQE-----------GDDEQAVRGT--L 422
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GRLL F+ DD + V S G + RM GK+
Sbjct: 423 GRLL------------------------------FSQDDIKKSVKVLSGGEKGRMLFGKL 452
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
++Q P++L++DEPTNH+D+++IE L L K + ++ +SHDR F+ L T+I+E
Sbjct: 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDG 512
Query: 334 SRTYEGNYSQYVLEKAA 350
+ G Y +Y+ +
Sbjct: 513 VVDFSGTYEEYLRSQGI 529
|
Length = 530 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 127 bits (323), Expect = 1e-33
Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 23/206 (11%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+KNL F Y D R + +LTI++GE I+GPNG GKSTLL+L+ GL P GEVL+
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 485 EHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLG 528
++ + QN + TV E VA E + + ++ L
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQN-PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + DR LSGG+K R+A + +L+LDEPT LD + L E + +
Sbjct: 121 LVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK 179
Query: 589 YKG---TVITVSHDRYFVKQIVNRVV 611
K T+I V+HD + ++ +RV+
Sbjct: 180 LKAEGKTIIIVTHDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 2e-33
Identities = 89/268 (33%), Positives = 126/268 (47%), Gaps = 70/268 (26%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE-HNVLPNYFEQNQAE-ALDLDKTV 507
G K ++G NG GKSTLL+++ G++K GE V Y Q E LD +KTV
Sbjct: 33 GAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV--GYLPQ---EPQLDPEKTV 87
Query: 508 LETVAEAAEDWRIDDIKGLLGRCN--------FKADM---------------------LD 538
E V E + ++K L R N AD LD
Sbjct: 88 RENVEEG-----VAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLD 142
Query: 539 RK----------------VSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSKEM 581
+ V+ LSGGE+ R+A C+ ++ KP LL LDEPTNHLD S
Sbjct: 143 SQLEIAMDALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLL-LDEPTNHLDAESVAW 201
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE----------K 631
LE+ + +Y GTV+ V+HDRYF+ + ++E+ + G+Y+ +LE K
Sbjct: 202 LEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKAKRLAQEEK 261
Query: 632 NLDAREKELEREAELEERAPKIK-AKSK 658
AR+K L+RE E ++PK + AKSK
Sbjct: 262 QEAARQKALKRELEWVRQSPKARQAKSK 289
|
Length = 556 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 3e-33
Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 31/203 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++NL FGY + + + + +I +GE T I+GPNG GKSTLLK + GL KP+ GEVL
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 483 LGEHNV--LPN--------YFEQNQAEALDLDKTVLETVA------------EAAEDWRI 520
L ++ L Y Q+ + L TV E V + ED I
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGL--TVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK- 579
++ L + DR V LSGGE+ R+ + + + + +L+LDEPT+HLDI +
Sbjct: 119 --VEEALELLGL-EHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQI 175
Query: 580 ---EMLEEAISEYKGTVITVSHD 599
E+L + E TV+ V HD
Sbjct: 176 EVLELLRDLNREKGLTVVMVLHD 198
|
Length = 258 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 4e-33
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 54/244 (22%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N++K Y G T L V++EV+ GE GL+G NGAGKTT L+I+AG +P SG ++
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
AK +I ++ QE + TVR E +E +L + K
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR--------ENLEFFARLYGLSKE----- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + LL+ F L D ++ V + S G + R
Sbjct: 112 EAEERIEELLELFGL---------------------------EDKANKKVRTLSGGMKQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+S+ LL DP+LL+LDEPT+ LD + E L + V +++ +H ++LC
Sbjct: 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC 204
Query: 324 TKIV 327
+++
Sbjct: 205 DRVI 208
|
Length = 293 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-32
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++NL Y +R + +L++E+GE TA+IGPNG GKSTLLK I+GL KP GE+ +
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 484 GEHNVLPN-------YFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIK 524
V Y Q + TV + V +D +
Sbjct: 64 FGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK--VD 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
L R + D+ DR++ LSGG+K R+ + + + LL+LDEP +D+ ++ + +
Sbjct: 122 EALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYD 180
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ E + TV+ V+HD V +RV+
Sbjct: 181 LLKELRQEGKTVLMVTHDLGLVMAYFDRVI 210
|
Length = 254 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 1e-31
Identities = 66/219 (30%), Positives = 104/219 (47%), Gaps = 31/219 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ Y A NL IE GE AI+GP+G GKSTLL L+ GL+KP G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------------TVLETVAEAAE------DWR 519
EVL+ ++ + + L K TVLE V R
Sbjct: 61 EVLINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ LL + +L +K S LSGG++ R+A + ++ +++ DEPT +LD +
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTA 178
Query: 580 EMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ + E + E T+I V+HD + + +RV+E+K
Sbjct: 179 KEVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELK 216
|
Length = 226 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 2e-31
Identities = 57/214 (26%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
+++L Y + + ++ GE AI+GPNG GKSTLLK I+GL KP G + + G+
Sbjct: 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 486 HNVLPN----YFEQNQAEALDLDK----TVLETVAEA------------AEDW-RIDDIK 524
Y Q +D+ +V + V D ++D+
Sbjct: 62 PLEKERKRIGYVPQR----RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEAL 117
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+G +++ DR++ LSGG++ R+ + +V+ LL+LDEP +D ++E + E
Sbjct: 118 ERVGL----SELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYE 173
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVVEVKG 615
+ E + T++ V+HD V + +RV+ +
Sbjct: 174 LLRELRREGMTILVVTHDLGLVLEYFDRVLLLNR 207
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 70/268 (26%), Positives = 123/268 (45%), Gaps = 27/268 (10%)
Query: 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V+ ++NL Y D+ + + +E GE ++GPNG GK+TLLK++ GL KP GE+L
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 483 LGEHNVLPNYFEQ-------NQAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ ++V+ + Q +L + TV E + A ++ + I+ LL
Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123
Query: 530 CNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPS----KEMLEE 584
+ D ++KV LSGG K RL+ + P LL+LDEPT+ LD S E+L E
Sbjct: 124 FGLE-DKANKKVRTLSGGMKQRLSIALALLHDPE-LLILDEPTSGLDPESRREIWELLRE 181
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL------QDYAGDYNYYLEKNLDAREK 638
E T++ +H +++ +RV+ + + ++ + L+
Sbjct: 182 LAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVIELEPERL 241
Query: 639 ELEREAELEERAPKIKAKSKMSKAEKEA 666
EL E + + +++ +A E
Sbjct: 242 ELAELLEGLKLVKGEEELAEILEALLEE 269
|
Length = 293 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 117 bits (297), Expect = 1e-30
Identities = 56/205 (27%), Positives = 92/205 (44%), Gaps = 43/205 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+E+GE ++GPNG GK+TL+K+I+GL KP GE+ +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
++ E + +L + TV E +
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENL-------------------------- 94
Query: 538 DRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTV 593
LSGG K RLA + + P LL+LDEPT+ LD S+ E + E K T+
Sbjct: 95 -----KLSGGMKQRLALAQALLHDPE-LLILDEPTSGLDPESRREFWELLRELKKEGKTI 148
Query: 594 ITVSHDRYFVKQIVNRVVEVKGSNL 618
+ SH +++ +RV + +
Sbjct: 149 LLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-30
Identities = 57/208 (27%), Positives = 95/208 (45%), Gaps = 56/208 (26%)
Query: 425 VTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ F Y R + +LTI+ GEK AI+GP+G GKSTLLKL++ L P GE+L
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 483 LGEHNVLPNYFEQNQAEALDLD-----------KTVL--ETVAEAAEDWRIDDIKGLLGR 529
+ ++ LDL+ L T+ E
Sbjct: 61 IDGVDL----------RDLDLESLRKNIAYVPQDPFLFSGTIRE---------------- 94
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
N +LSGG++ R+A + +++ +L+LDE T+ LD ++ ++ EA+
Sbjct: 95 -N-----------ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL 142
Query: 590 KG--TVITVSHDRYFVKQIVNRVVEVKG 615
TVI ++H R + +R++ +
Sbjct: 143 AKGKTVIVIAH-RLSTIRDADRIIVLDD 169
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 6e-30
Identities = 71/212 (33%), Positives = 101/212 (47%), Gaps = 26/212 (12%)
Query: 423 SVVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ +NL F Y R +L IE+GE+ +IGPNG GKSTLLKL+ GL KP GEV
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 482 LLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
L+ + QN + L TV + VA E+ + +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
L + ++LDR LSGG+K R+A + P +L+LDEPT LD + L
Sbjct: 121 EALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPE-ILLLDEPTAGLDPKGRRELL 178
Query: 584 EAISEYK----GTVITVSHDRYFVKQIVNRVV 611
E + + K T+I V+HD V + +RVV
Sbjct: 179 ELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 8e-30
Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 50/252 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SK + ++ D+++++ G VG++G NGAGK+T R+I GQE+PDSG IK
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKI 381
Query: 158 KSNMKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+K+A++ Q + + ++TV E EI+G L+ +Q + ++ R
Sbjct: 382 GETVKLAYVDQSRDALDPNKTVWE----------EISGGLDIIQ------LGKREVPSR- 424
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
A V + F D + V S G + R+ L K L
Sbjct: 425 --------------------AYVGR----FNFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVS 334
++LLLDEPTN LD++T+ LE L + V+ISHDR FLD++ T I+ E G S
Sbjct: 461 GGNVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVISHDRWFLDRIATHILAFE-GDS 517
Query: 335 RT--YEGNYSQY 344
+EGNYS+Y
Sbjct: 518 HVEWFEGNYSEY 529
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 1e-29
Identities = 54/218 (24%), Positives = 99/218 (45%), Gaps = 31/218 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KNL + +A + +I++GE ++G +G GKSTL + I+GL KP G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 480 EVLLGEHNVLPN-------------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ ++L Q+ +L+ T+ E +AE K
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 527 LGRCNFK--------ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIP 577
++L+R LSGG++ R+A + + P LL+ DEPT+ LD+
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPK-LLIADEPTSALDVS 179
Query: 578 SK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+ ++L++ E T++ ++HD V +I +RV
Sbjct: 180 VQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-29
Identities = 65/198 (32%), Positives = 102/198 (51%), Gaps = 29/198 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +K L Y + +LT+E GE A++GP+GCGK+TLL+LI GLE+P GE+L+
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 485 EHNV--LPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+V +P F+ AL TV E +A +A R+ ++ L
Sbjct: 61 GRDVTGVPPERRNIGMVFQDY---ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----ML 582
+G +L+R LSGG++ R+A + + + +LL+LDEP + LD +E L
Sbjct: 118 VGL----EGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREEL 173
Query: 583 EEAISEYKGTVITVSHDR 600
+E E T I V+HD+
Sbjct: 174 KELQRELGITTIYVTHDQ 191
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 2e-29
Identities = 39/69 (56%), Positives = 55/69 (79%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319
S G +MR++L K+LL++P+LLLLDEPTNHLDL++IE LE L + ++++SHDR FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 320 DQLCTKIVE 328
DQ+ TKI+E
Sbjct: 131 DQVATKIIE 139
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-28
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 39/233 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K +++K+Y VL D++ VKKGE G +G NGAGKTT ++II G +PDSG
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----- 55
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I F + ++ ++ R + A E L +A +++ L+ RL
Sbjct: 56 ----EITFDGKSYQKNIEALRR---IGALIEAPGFYPNL--------TARENLRLLARL- 99
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L ++ +++ +G D + V FS G + R+ + LL +
Sbjct: 100 --------------LGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGN 144
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
PDLL+LDEPTN LD D I+ L L Q + ++I SH + + ++ +I
Sbjct: 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-28
Identities = 57/218 (26%), Positives = 105/218 (48%), Gaps = 32/218 (14%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y +D + +L I GEK AI+G +G GKSTLLKL++GL KP+ G +L
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 483 LGEHNVLPNYFEQNQ---------AEALDLDKTVLETVAEAAEDWRIDDIKGLL---GRC 530
L ++ N + + ++ E +A + ++I G
Sbjct: 532 LDGVDL--NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAH 589
Query: 531 NFKADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
F ++ D V + LSGG++ RLA + ++ +L+LDE T+ LD ++ ++
Sbjct: 590 EFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIIL 649
Query: 584 EAISEYKG--TVITVSHDRYFVK---QIV----NRVVE 612
+ + + TVI ++H ++ +I+ ++VE
Sbjct: 650 QNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVE 687
|
Length = 709 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-28
Identities = 57/199 (28%), Positives = 95/199 (47%), Gaps = 15/199 (7%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
I+N+ F Y+ + + +L + GE A+ G NG GK+TL K++ GL K G +LL
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 485 EHNVLP-------NYFEQNQAEALDLDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKAD 535
+ Y Q+ L D +V E + ++ + + +L +
Sbjct: 61 GKPIKAKERRKSIGYVMQDVDYQLFTD-SVREELLLGLKELDAGNEQAETVLKDLDL-YA 118
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---T 592
+ +R LSGG+K RLA ++ LL+ DEPT+ LD + E + E I E
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 593 VITVSHDRYFVKQIVNRVV 611
VI ++HD F+ ++ +RV+
Sbjct: 179 VIVITHDYEFLAKVCDRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 62/209 (29%), Positives = 93/209 (44%), Gaps = 23/209 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++ L + R + +L + RGE AIIGP+G GKSTLL+LI+GL +P GEVL+
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 485 EHNVLPNYFEQNQAE-----------ALDLDKTVLETVA------EAAEDWRIDDIKGL- 526
++ + AL TV E VA + I +I
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
L + D + LSGG K R+A + + LL+ DEPT LD + ++++ I
Sbjct: 121 LEAVGLRGA-EDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLI 179
Query: 587 S----EYKGTVITVSHDRYFVKQIVNRVV 611
E T I V+HD I +R+
Sbjct: 180 RSLKKELGLTSIMVTHDLDTAFAIADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 4e-27
Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 50/243 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++EN++ SY VL+D++ V+KGE L+G NGAGK+T L+ I G +P SG +
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 156 -----KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + ++I ++ Q+ V S TV++ + + G R+ K + VD
Sbjct: 65 GKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK---GWFRRLNKKDKEKVD 121
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+ + + DR + S G + R+
Sbjct: 122 ------EALERVGMEDLR---------------------------DRQIGELSGGQKQRV 148
Query: 269 SLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
L + L Q+PDLLLLDEP +D + + L+ L ++ +++++HD +
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LRQEGKTVLMVTHDLGLVMAYFD 207
Query: 325 KIV 327
+++
Sbjct: 208 RVI 210
|
Length = 254 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 5e-27
Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 74/254 (29%)
Query: 99 KLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+L+N+S SY L D++ +KKGE V +VG NG+GK+T LR++ G P SG V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 155 ----IKAKSNM----KIAFLSQEFEVSMSR-TVREEFMSAF--------KEEMEIAGKLE 197
+ S K+ + Q + TV EE AF +EE+E E
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV--AFGLENLGLPEEEIE-----E 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV++ALE V L+ L DR
Sbjct: 114 RVEEALE------------------------LVGLEGLR-----------------DRSP 132
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIIS 313
+ S G + R+++ +L DPD+LLLDEPT LD + +E L+ L + ++I++
Sbjct: 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIVT 191
Query: 314 HDRAFLDQLCTKIV 327
HD L +L +++
Sbjct: 192 HDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (276), Expect = 6e-27
Identities = 68/194 (35%), Positives = 101/194 (52%), Gaps = 20/194 (10%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+++ I+ + + + NL++E+GE AI+GP+GCGKSTLL+LI GLEKP GEV
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 482 LLGEHNVL---PNY---FEQNQAEALDLDKTVLETVA------EAAEDWRIDDIKGLLGR 529
LL V P+ F Q +AL TVL+ VA ++ + K LL
Sbjct: 61 LLDGRPVTGPGPDIGYVF---QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
A D+ LSGG + R+A + + LL+LDEP LD ++E L++ +
Sbjct: 118 VGL-AGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRL 176
Query: 587 -SEYKGTVITVSHD 599
E + TV+ V+HD
Sbjct: 177 WEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 9e-27
Identities = 67/221 (30%), Positives = 110/221 (49%), Gaps = 33/221 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + +KN+ + + NL IE GE ++GP+GCGKSTLL++I GLE+P GE+L
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 483 LGEHNV--LP-----------NY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ +V LP NY +N A L L V +A D R+ +
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG-----VPKAEIDKRVKE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ LLG +L+RK LSGG++ R+A + +V+ + +LDEP ++LD + ++
Sbjct: 117 VAKLLG----LEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172
Query: 583 EEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619
I + T I V+HD+ + +R+V + +Q
Sbjct: 173 RSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQ 213
|
Length = 338 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 1e-26
Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 52/253 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SKS+ ++ D+++ + G VG++G NGAGK+T ++I GQE+PDSG IK
Sbjct: 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKI 383
Query: 158 KSNMKIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K+A++ Q + ++ ++TV EE I+G L+ ++ V + ++ R
Sbjct: 384 GETVKLAYVDQSRD-ALDPNKTVWEE----------ISGGLDIIK------VGNREIPSR 426
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
A V + F D + V S G + R+ L K L
Sbjct: 427 ---------------------AYVGRF----NFKGGDQQKKVGVLSGGERNRLHLAKTLK 461
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGV 333
Q ++LLLDEPTN LD++T+ LE L + P V+ISHDR FLD++ T I+ E G
Sbjct: 462 QGGNVLLLDEPTNDLDVETLRALEEAL--LEFPGCAVVISHDRWFLDRIATHILAFE-GD 518
Query: 334 SRT--YEGNYSQY 344
S+ +EGN+ +Y
Sbjct: 519 SQVEWFEGNFQEY 531
|
Length = 556 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 77/271 (28%), Positives = 128/271 (47%), Gaps = 54/271 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+++I + D L + A L IE E+ ++G NG GKSTL+K++ GEVL
Sbjct: 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVL 54
Query: 483 LG------EHNVLPNYFEQN-------------------QAEAL------------DLDK 505
L E +++ +Q+ QAE L D +
Sbjct: 55 LDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSE 114
Query: 506 TVLETVAEAAED------WRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558
L +A+ E W++++ I +L + D +S LSGG + A + +
Sbjct: 115 KNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDPDA---ALSSLSGGWLRKAALGRAL 171
Query: 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618
V +L+LDEPTNHLDI + E LE + ++G++I +SHDR F++ + R+V++ L
Sbjct: 172 VSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKL 231
Query: 619 QDYAGDYNYYLEKNLDAREKELEREAELEER 649
Y G+Y+ YL + +A E + AE + +
Sbjct: 232 VSYPGNYDQYLLEKEEALRVEELQNAEFDRK 262
|
Length = 635 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-26
Identities = 66/215 (30%), Positives = 107/215 (49%), Gaps = 32/215 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++ + + DR++ + +L + RGE AI+G +G GKSTLL+LI+GL +P GE+L+
Sbjct: 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 484 -GEHNVLPNYFEQNQAEALDLDK---------------TVLETVA----EAAE--DWRID 521
GE + + ++ E ++ K TV E VA E + + I
Sbjct: 68 DGE-----DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122
Query: 522 DIKGL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
++ + L + D S LSGG + R+A + + LL LDEPT+ LD S
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAG 182
Query: 581 MLEEAISEYK----GTVITVSHDRYFVKQIVNRVV 611
+++E I E TVI V+HD + I +RV
Sbjct: 183 VIDELIRELNDALGLTVIMVTHDLDSLLTIADRVA 217
|
Length = 263 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 5e-26
Identities = 58/202 (28%), Positives = 90/202 (44%), Gaps = 45/202 (22%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +KN+ Y + + N +L IE GE A++GP+G GKSTLL+ I GLE+P G +L+
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 485 -----EHNVLPNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA 534
+ + Q AL TVLE +A
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG-------------------- 100
Query: 535 DMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
LSGG++ R+A + + P LL LDEPT+ LD ++ + + +
Sbjct: 101 ---------LSGGQQQRVALARALAMDPDVLL-LDEPTSALDPITRREVRALLKSLQAQL 150
Query: 592 --TVITVSHDRYFVKQIVNRVV 611
TV+ V+HD ++ +RVV
Sbjct: 151 GITVVLVTHDLDEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 66/252 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++EN+S Y G +L D+++ + KGE G++G NG+GK+T L+ +AG +P SG V
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 155 ---IKAKSNM----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I + S K+A++ Q TV E V
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE-------------------------LV 97
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L+GR L F ++ + V + + LG DR V S G +
Sbjct: 98 ----LLGRYPHLGLFGRPSKEDE--------EIVEEALELLG-LEHLADRPVDELSGGER 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+ + + L Q+ +LLLDEPT+HLD L+ + L ++ + +V++ HD
Sbjct: 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHD--- 198
Query: 319 LDQ---LCTKIV 327
L+ ++
Sbjct: 199 LNLAARYADHLI 210
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 48/240 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++E+++ SY G VL+DV++EVK GE + +VG NGAGK+T L+ I G +P SG++
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 156 --KAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL-ESAVDDM 210
K +I ++ Q + +VR+ + + +L + KA + A++ +
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L +L R + L S G Q R+ L
Sbjct: 121 GL-------SELADR-----QIGEL-------------------------SGGQQQRVLL 143
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327
+ L+QDPDLLLLDEP +D T E + L + + + +++++HD + + +++
Sbjct: 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-25
Identities = 56/181 (30%), Positives = 79/181 (43%), Gaps = 27/181 (14%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFE 494
R+LF+ + T+ GE + GPNG GK+TLL+LI GL P G + L ++ P+ E
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 495 QNQ----AEALDLDKTVLETVAEAAEDWRIDDIKGLLGR---------CNFK-ADMLDRK 540
A+ K L TVAE E W LG A +
Sbjct: 74 ACHYLGHRNAM---KPAL-TVAENLEFWA-----AFLGGEELDIAAALEAVGLAPLAHLP 124
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVS 597
LS G+K R+A + +V + +LDEPT LD + + E I + G VI +
Sbjct: 125 FGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAAT 184
Query: 598 H 598
H
Sbjct: 185 H 185
|
Length = 207 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-25
Identities = 56/218 (25%), Positives = 103/218 (47%), Gaps = 26/218 (11%)
Query: 419 RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++++NL F Y D + + NLTI+ G+ TA++G +G GKSTLL L++G P
Sbjct: 315 NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT 374
Query: 478 GGEVLLGEHNVL-----------------PNYFEQNQAEALDLDKTVL--ETVAEAAEDW 518
GE+ + ++ P F E + L + E + A +
Sbjct: 375 QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQA 434
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
+ + + ++ + LSGG+ RLA + ++ P++LL+LDEPT HLD +
Sbjct: 435 GLLEFVPKPDGLDT---VIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491
Query: 579 KEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVK 614
++++ +A+ E TV+ ++H +R+V +
Sbjct: 492 EQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLD 528
|
Length = 559 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-25
Identities = 133/565 (23%), Positives = 247/565 (43%), Gaps = 119/565 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVI 155
++++N++K + G VLK++++ +++GE +G++G +GAGK+ + ++ G + EP SG +I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 156 KAKSNM-KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ K ++ + +V V + EE++ +++++ + + M
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLE--PEEVDFWNLSDKLRRRIRKRIAIM---- 114
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-DRLVA--------------- 258
LQR DT+ V + + E+G+ + R V
Sbjct: 115 --------LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 259 -SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGKQDVPMVIIS 313
S G + R+ L + L ++P L L DEPT LD T + LE + + MV+ S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H ++ L K + E G + EG + V A ++E + +++ E+E + +I
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKE-EGTPDEVV---AVFMEG--VSEVEKECEVEVGEPII 280
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
K+ + ++ + + +RG V + N+
Sbjct: 281 -----------------KVRNV----------SKRYISV---DRG----VVKAVDNVSL- 305
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE--VLLGEHNV--- 488
++ GE I+G +G GK+TL K+I G+ +P GE V +G+ V
Sbjct: 306 ------------EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMT 353
Query: 489 LPNYFEQNQAE----------ALDLDKTVLETVAEAA------EDWRIDDIKGL--LGRC 530
P + +A+ L +TVL+ + EA E R+ + L +G
Sbjct: 354 KPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFD 413
Query: 531 NFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
KA ++LD+ LS GE+ R+A + ++K +++LDEPT +D +K + +I
Sbjct: 414 EEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473
Query: 587 -SEYKGTVITVSHDRYFVKQIVNRV 610
E + T I VSHD FV + +R
Sbjct: 474 REEMEQTFIIVSHDMDFVLDVCDRA 498
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 63/201 (31%), Positives = 94/201 (46%), Gaps = 32/201 (15%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEV 481
+++L Y D+ +L I +GE TA+IGP+GCGKSTLL+L+ L P GEV
Sbjct: 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62
Query: 482 LLGEHNVLPNYFEQNQAEALD------------LDKTVLETVAEAAEDWRIDDIKGL--- 526
LL ++ Y L ++ + VA I + L
Sbjct: 63 LLDGKDI---YDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDER 119
Query: 527 ----LGRCNFKADMLDRKVSL-LSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE 580
L + ++ DR +L LSGG++ RL + +P LL LDEPT+ LD S
Sbjct: 120 VEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLL-LDEPTSALDPISTA 178
Query: 581 MLEEAISEYKG--TVITVSHD 599
+EE I+E K T++ V+H+
Sbjct: 179 KIEELIAELKKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 4e-25
Identities = 65/215 (30%), Positives = 100/215 (46%), Gaps = 33/215 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++++NL Y A +L IERGE I+G +G GKSTL +L+ GLEKP G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 481 VLLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDDIKG---- 525
+LL + P Q+ +L+ +TV ++E R +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP---LRPHGLSKSQQR 120
Query: 526 ---LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEM 581
LL + LDR+ LSGG++ R+A + + +P LL+LDEPT+ LD S +
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK-LLILDEPTSALD-VSVQA 178
Query: 582 -----LEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
L E E T + +SHD V+ + +R+
Sbjct: 179 QILNLLLELKKERGLTYLFISHDLALVEHMCDRIA 213
|
Length = 252 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 102 bits (258), Expect = 6e-25
Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 67/255 (26%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK+Y G V LK V+ ++KGE V +VG +G+GK+T L I+ G + P SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 154 VIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--E 197
V +++ I F+ Q F + T E + +AG E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP----LLLAGVPKKE 116
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E LL+ L R L+ S+L
Sbjct: 117 RRERAEE-----------LLERVGLGDR---------LNHYPSEL--------------- 141
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
S G Q R+++ + L DP ++L DEPT +LD +T +E L + +V+++
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVT 198
Query: 314 HDRAFLDQLCTKIVE 328
HD L + +I+E
Sbjct: 199 HDP-ELAEYADRIIE 212
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-24
Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 23/208 (11%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE- 485
+KN+ + D+++ + NLTIE+G+ AIIG +G GKSTLL +I LEK G+V L
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 486 -----HNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLG 528
++ + F + Q AL ++TV E + + ++ K L
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ L +K+ LSGGE+ R+A + ++KP L++ DEPT LD +++ + + + E
Sbjct: 121 KVGLNLK-LKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE 179
Query: 589 YKG---TVITVSHDRYFVKQIVNRVVEV 613
T+I V+HD V + +RV+E+
Sbjct: 180 LNDEGKTIIIVTHDPE-VAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-24
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 52/232 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L+ +SK+Y V L D++ V+ GE + L+G +G GKTT LR+IAG E PDSG ++
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 158 KSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ I + Q++ + TV E AF ++ K E + E
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENI--AFGLKLRGVPKAEIRARVRELL--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L+ LL R S G Q R++
Sbjct: 116 -----ELVGLEGLLNRY------------------------------PHELSGGQQQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRA 317
L + L ++P LLLLDEP + LD E L L + + + ++HD+
Sbjct: 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-24
Identities = 61/204 (29%), Positives = 103/204 (50%), Gaps = 30/204 (14%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + I+N+ + D + +L I++GE ++GP+GCGK+TLL++I G E+P G
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 480 EVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA----------EAAEDWRI 520
E+LL ++ +P F Q+ AL TV E VA +A R+
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVF---QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
++ L+G DRK LSGG++ R+A + +V +L+LDEP + LD +E
Sbjct: 118 EEALELVG----LEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173
Query: 581 MLEEAISEYKG----TVITVSHDR 600
+ + + E + T + V+HD+
Sbjct: 174 QMRKELKELQRELGITFVYVTHDQ 197
|
Length = 352 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 5e-24
Identities = 56/194 (28%), Positives = 86/194 (44%), Gaps = 39/194 (20%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++N+ F Y + + +IE GE AIIGP+G GKSTL +LI+GL +P G V L
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
Query: 485 E---HNVLPNYFEQNQAEALDLDKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
PN + L D + ++AE
Sbjct: 63 GADISQWDPNELGDHVG-YLPQDDELFSGSIAEN-------------------------- 95
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVS 597
+LSGG++ RL + + +LVLDEP +HLD+ + L +AI+ K T I ++
Sbjct: 96 --ILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIA 153
Query: 598 HDRYFVKQIVNRVV 611
H R +R++
Sbjct: 154 H-RPETLASADRIL 166
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 7e-24
Identities = 69/220 (31%), Positives = 105/220 (47%), Gaps = 46/220 (20%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y ++ + +LTI GEK AIIG G GKSTLLKL+ GL KP G VL
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTV-----------------LETVAEAAEDWRIDDIKG 525
L ++ Q + DL + + + A A+D RI
Sbjct: 63 LDGTDI-------RQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAE 115
Query: 526 LLGRCNFKADM---LDRKVS----LLSGGEK-----ARLAFCKFMVKPSTLLVLDEPTNH 573
L G +F LD ++ LSGG++ AR + P LL LDEPT+
Sbjct: 116 LAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARA----LLNDPPILL-LDEPTSA 170
Query: 574 LDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+D+ S+E L+E + + G T+I ++H R + +V+R++
Sbjct: 171 MDMNSEERLKERLRQLLGDKTLIIITH-RPSLLDLVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 9e-24
Identities = 62/223 (27%), Positives = 104/223 (46%), Gaps = 34/223 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KNL Y +A +L+IE+GE AI+GP+G GKSTLL ++ GL++P GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 481 VLLGEHNVLPNYFEQNQAEAL---------------DLDKTVLETVAEAAE------DWR 519
V + ++ E+ A DL T LE V R
Sbjct: 61 VRVDGTDIS-KLSEKELAAFRRRHIGFVFQSFNLLPDL--TALENVELPLLLAGVPKKER 117
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ + LL R D L+ S LSGG++ R+A + + +++ DEPT +LD +
Sbjct: 118 RERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176
Query: 580 EMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618
+ + E + E T++ V+HD + +R++E++ +
Sbjct: 177 KEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 9e-24
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 40/241 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ ++K + G+ L DV++ V+ GE GL+G NGAGKTT +I+G P SG+V
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEF--MSAFKEEMEIAGKLERVQKALESAVDDM 210
I +IA L + RT F F E+ + LE V A ++
Sbjct: 62 EDITGLPPHEIARL------GIGRT----FQIPRLF-PELTV---LENVMVAAQARTGSG 107
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+ R E + +A+ + L+ + L AD DR S G Q R+ +
Sbjct: 108 LLLARARREEREARERAEEL-LERV---------GL---ADLADRPAGELSYGQQRRLEI 154
Query: 271 GKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
+ L DP LLLLDEP L+ + E + L ++ + ++++ HD + L ++
Sbjct: 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERGITVLLVEHDMDVVMSLADRV 213
Query: 327 V 327
Sbjct: 214 T 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 9e-24
Identities = 56/200 (28%), Positives = 88/200 (44%), Gaps = 24/200 (12%)
Query: 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ + Y R + T+ GE+ A++GP+G GKSTLL L++G P G +
Sbjct: 320 PSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 482 LLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC-- 530
+ L + + Q L T+ E + A D +I+ L R
Sbjct: 380 AVNG-VPLADADADSWRDQIAWVPQHPFL-FAGTIAENIRLARPDASDAEIREALERAGL 437
Query: 531 -NFKAD---MLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
F A LD + + LSGG+ RLA + ++ + LL+LDEPT HLD ++ +
Sbjct: 438 DEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV 497
Query: 583 EEAISEYKG--TVITVSHDR 600
EA+ TV+ V+H
Sbjct: 498 LEALRALAQGRTVLLVTHRL 517
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 97.5 bits (244), Expect = 2e-23
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 72/235 (30%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
++EN+S Y G TVL D++ ++ GE VG++G NGAGK+T L+ +AG +P SG ++
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
++ S+S E+A K+ V +ALE LL
Sbjct: 61 KDLA----------SLSPK-------------ELARKIAYVPQALE-----------LLG 86
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
L R + L S G + R+ L + L Q+P
Sbjct: 87 LAHLADR-----PFNEL-------------------------SGGERQRVLLARALAQEP 116
Query: 279 DLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD--RAFLDQLCTKIV 327
+LLLDEPT+HLD+ + +E L ++ +V++ HD A + +++
Sbjct: 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA--RYADRVI 169
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 98.8 bits (247), Expect = 2e-23
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++LEN++K Y L V+ + G GL+G NGAGKTT +RI+A P SG +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 155 -IKAKSNM-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESA 206
+I +L QEF V + TVRE ++++ K + RV + LE
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLE-- 116
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
VNL D + + S S G +
Sbjct: 117 ----------------------LVNL-----------------GDRAKKKIGSLSGGMRR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L+ DP +L++DEPT LD
Sbjct: 138 RVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 98.9 bits (247), Expect = 2e-23
Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 28/216 (12%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++NL +++ L N +L +ERG+ I+GP G GKS LL+ I G KP G++LL
Sbjct: 3 VENLSKDWKEFKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61
Query: 487 NV--LP------NYFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
++ LP +Y QN AL TV + +A + + ++ +I +LG
Sbjct: 62 DITNLPPEKRDISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG- 118
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEA 585
+L+RK LSGGE+ R+A + +V +L+LDEP + LD+ +KE L++
Sbjct: 119 ---IDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKI 175
Query: 586 ISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
E+ TV+ V+HD + ++V + L
Sbjct: 176 RKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQV 211
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-23
Identities = 70/233 (30%), Positives = 105/233 (45%), Gaps = 32/233 (13%)
Query: 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI--KNLEFGYED-RLLFNRANLTIE 448
ER+ E P P G G T+ ++L GY + + +L +
Sbjct: 304 AERIVEVLDAAGPVAEGS----APAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLP 359
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------GEHNVLPNYFEQNQA 498
GE+ AI+GP+G GKSTLL + GL P GEV L E + Q+
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD-- 417
Query: 499 EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF------KADMLDRKV----SLLSGGE 548
A D TV E + A D +++ L R D LD + + LSGGE
Sbjct: 418 -AHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 549 KARLAFCKFMVKPSTLLVLDEPTNHLDI-PSKEMLEEAISEYKG-TVITVSHD 599
+ RLA + ++ + +L+LDEPT HLD + E+LE+ ++ G TV+ ++H
Sbjct: 477 RQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHH 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 97.2 bits (243), Expect = 7e-23
Identities = 46/192 (23%), Positives = 91/192 (47%), Gaps = 18/192 (9%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I+NL + + + +L + +GE ++G NG GK+T LK++ G +P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 483 LGEHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ +++ Q+ Q +AL + TV E + A + ++++ LL
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
+++ LSGG K +L+ ++ ++L+LDEPT+ LD S+ + + I E
Sbjct: 121 LGLTDKA-NKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV 179
Query: 590 KG--TVITVSHD 599
+ ++I +H
Sbjct: 180 RKGRSIILTTHS 191
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 9e-23
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 53/250 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ N+ K + L D++ ++K GE V L+G +GAGK+T LRIIAG E PD+G +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 158 KSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K+ F+ Q + + TV + K E + E + E
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE-- 120
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
LL V L+ L DR A S G +
Sbjct: 121 ---------LLRL----------VQLEGL-----------------ADRYPAQLSGGQRQ 144
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIE-WLEGYLGKQDVPMVIISHDRAFLDQL 322
R++L + L +P +LLLDEP LD + WL + V V ++HD+ +L
Sbjct: 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204
Query: 323 CTKIVETEMG 332
++V G
Sbjct: 205 ADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 1e-22
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 58/247 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ ++L+N+ KS+ VLKDV +++ GE V L+G +G GK+T LR+IAG EEP SG ++
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 156 --------KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKA-LE 204
IA + Q + + M TV E + KL V KA ++
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHM--TVY--------ENIAFGLKLRGVPKAEID 111
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
V ++ AK+ L L +R S G
Sbjct: 112 KRVKEV--------------------------AKLLGLEHLL-------NRKPLQLSGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD----VPMVIISHDRAFLD 320
+ R++L + L++ P + LLDEP ++LD + + K + ++HD+
Sbjct: 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM 198
Query: 321 QLCTKIV 327
L +IV
Sbjct: 199 TLADRIV 205
|
Length = 338 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 1e-22
Identities = 65/206 (31%), Positives = 98/206 (47%), Gaps = 33/206 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPN----YFEQN- 496
+ I +GE + GP+G GKSTLLKLI G E+P G++L+ H++ L + +
Sbjct: 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81
Query: 497 ----QAEALDLDKTVLETVAEAAE-------DWRID-----DIKGLLGRCNFKADMLDRK 540
Q L D+TV E VA + R D+ GL KA L
Sbjct: 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH----KARALP-- 135
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVS 597
S LSGGE+ R+A + +V +L+ DEPT +LD S E++ E I+ TV+ +
Sbjct: 136 -SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMAT 194
Query: 598 HDRYFVKQIVNRVVEVKGSNLQDYAG 623
HD V ++ +RV+ ++ L
Sbjct: 195 HDLELVNRMRHRVLALEDGRLVRDES 220
|
Length = 223 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-22
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +++KSY ++DV++E ++GE GL+G NGAGKTT LR+IA PDSG V
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ V VR + + E + +L +A +++ RL
Sbjct: 62 DGVDT----------VRDPSFVRRK-IGVLFGERGLYARL--------TARENLKYFARL 102
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L RK + A++++L L + DR V FS+G + ++++ + L+
Sbjct: 103 NG----LSRK-------EIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVH 150
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVII---SHDRAFLDQLCTKIV 327
DP +L+LDEPT+ LD+ T ++ + + SH ++ LC +++
Sbjct: 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204
|
Length = 245 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 1e-22
Identities = 65/210 (30%), Positives = 94/210 (44%), Gaps = 54/210 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ ++N+ Y A +L++E GE A++GP+GCGKSTLL++I GLE+P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 481 VLLG----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
VL+ + +LP TVL+ VA E +
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPW-------------LTVLDNVALGLELQGVPK-A 106
Query: 525 GLLGRCNFKADMLDRKVSL----------LSGGEKARLAFCK-FMVKPSTLLVLDEPTNH 573
R A+ L V L LSGG + R+A + V P LL LDEP +
Sbjct: 107 EARER----AEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL-LDEPFSA 161
Query: 574 LDIPSKEMLEEAI----SEYKGTVITVSHD 599
LD ++E L+E + E TV+ V+HD
Sbjct: 162 LDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 24/219 (10%)
Query: 410 MKIRFP-ERGRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
++ FP E+ + + ++N+ F Y NLT+ +GEK AI+G +G GKSTL
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380
Query: 467 LKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--------LDKTVLETVAEAAED- 517
L+L+ G P+ G + L + + EQ E + T+ + + A D
Sbjct: 381 LQLLAGAWDPQQGSITLNGVEI-ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439
Query: 518 -----WRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLD 568
W GL D L+ + LSGGE+ RLA + ++ + L +LD
Sbjct: 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLD 499
Query: 569 EPTNHLD-IPSKEMLEEAISEYKG-TVITVSHDRYFVKQ 605
EPT LD I +++L +G T++ V+H +++
Sbjct: 500 EPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLER 538
|
Length = 573 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-22
Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 27/178 (15%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++I N+ F Y +++ + +L +++GEK A++G +G GKSTLL+L+ G KP+ GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
L V DL+K + ++ + + + L F + +
Sbjct: 61 LDGVPV------------SDLEKALSSLIS-------VLNQRPYL----FDTTLRNNLGR 97
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEYKG-TVITVSH 598
SGGE+ RLA + +++ + +++LDEPT LD I +++L K T+I ++H
Sbjct: 98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITH 155
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 4e-22
Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++++N+SKS+ VLK ++ V+KGE V ++G +G+GK+T LR + G EEPDSG++
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 155 ---IKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K ++ K+ + Q+F + TV E A KL + +A E A
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA----PVKVKKLSK-AEAREKA 117
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ LL++ L KA A P A S G Q
Sbjct: 118 LE-------LLEKVGLAD-KADA-------------YP-------------AQLSGGQQQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFL 319
R+++ + L DP ++L DEPT+ LD LD ++ L ++ + M+I++H+ F
Sbjct: 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMIIVTHEMGFA 199
Query: 320 DQLCTKIVETEMGV 333
++ +++ + G
Sbjct: 200 REVADRVIFMDQGK 213
|
Length = 240 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 5e-22
Identities = 58/195 (29%), Positives = 98/195 (50%), Gaps = 25/195 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + + NL I GE ++GP+GCGK+T L++I GLE+P G + +G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 485 EHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLG 528
+V LP +++ Q AL TV + +A + D R+ ++ LL
Sbjct: 61 GRDVTDLPPK-DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ 119
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLEEAIS 587
+LDRK LSGG++ R+A + +V+ + ++DEP ++LD + +M E
Sbjct: 120 ----IEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKR 175
Query: 588 ---EYKGTVITVSHD 599
T I V+HD
Sbjct: 176 LQQRLGTTTIYVTHD 190
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 5e-22
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 53/201 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+SK Y V+ V+ VK+GE VGL+G NGAGKTT +I G +PDSG +
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ERVQKALES 205
+ ++ + I +L QE + TV E ++ +EI G + ++ LE
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV----LEIRGLSKKEREEKLEE 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
LL+EF + + K +S S G +
Sbjct: 117 ----------LLEEFHI--------------THLRK-------------SKASSLSGGER 139
Query: 266 MRMSLGKILLQDPDLLLLDEP 286
R+ + + L +P LLLDEP
Sbjct: 140 RRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.5 bits (236), Expect = 7e-22
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 64/258 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK Y V LKDV E++ GE V +VG +G+GK+T L ++ G ++P SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 154 VI-----------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ER 198
V+ K + + KI F+ Q F + TV E + IAGK R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP----LLIAGKSAGR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++A E LL+ L R + +
Sbjct: 118 RKRAAEE----------LLEVLGLEDRLL--------------------------KKKPS 141
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G Q R+++ + L+ +P ++L DEPT +LD T +E L ++ +++++H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 315 DRAFLDQLCTKIVETEMG 332
D +++E + G
Sbjct: 202 DPELAKY-ADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 94.0 bits (234), Expect = 8e-22
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 35/198 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + ++K + K V + V++ VK GE GL+G NGAGKTT LR++AG EPD+G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
V V+E + + + L +A ++++
Sbjct: 62 A----------------TVDGFDVVKEPA--EARRRLGFVSDSTGLYDRL-TARENLEYF 102
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L + D L A++ +L LG + DR V FS+G + ++++ +
Sbjct: 103 AGL-----------YGLKGDELTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARA 150
Query: 274 LLQDPDLLLLDEPTNHLD 291
L+ DP +LLLDEPT LD
Sbjct: 151 LVHDPPVLLLDEPTTGLD 168
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 9e-22
Identities = 65/210 (30%), Positives = 102/210 (48%), Gaps = 33/210 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + ++ F Y + R +LT+ GE AI+GP+G GKSTLL LI G E P GE+L+
Sbjct: 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 485 --EHNVLPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+H P F++N L TV + + A + +++
Sbjct: 60 GVDHTASPPAERPVSMLFQENN---LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ 116
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEMLE- 583
+G A L R LSGG++ R+A + +V+ +L+LDEP + LD P+ EML
Sbjct: 117 VGL----AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRAEMLAL 171
Query: 584 --EAISEYKGTVITVSHDRYFVKQIVNRVV 611
+ E K T++ V+H +I +RVV
Sbjct: 172 VSQLCDERKMTLLMVTHHPEDAARIADRVV 201
|
Length = 231 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 1e-21
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SK Y T L D++ V+KGE GL+G NGAGKTT ++II G +PDSG +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVRE 180
+ +I +L +E + + TVRE
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 1e-21
Identities = 58/188 (30%), Positives = 89/188 (47%), Gaps = 30/188 (15%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------ 490
RL+ + ++T G T ++GPNG GKSTLL+L+ G +P G V L ++
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 491 ----NYFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIKGLLGRCNFKA 534
EQ+ A+ L TV + VA ++ D + D L R +
Sbjct: 74 ARRVALVEQDSDTAVPL--TVRDVVALGRIPHRSLWAGDSPHDAAVVD--RALARTEL-S 128
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--- 591
+ DR +S LSGGE+ R+ + + + LL+LDEPTNHLD+ ++ + E
Sbjct: 129 HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGV 188
Query: 592 TVITVSHD 599
TV+ HD
Sbjct: 189 TVVAALHD 196
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 2e-21
Identities = 58/201 (28%), Positives = 82/201 (40%), Gaps = 39/201 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--------- 492
+ ++ GE +IGPNG GK+TL LI G +P G VL ++ LP +
Sbjct: 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79
Query: 493 -FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA---------------DM 536
F Q +L TVLE V AA+ + R + D+
Sbjct: 80 TF-QIPRLFPEL--TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 537 LDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT---NHLDIPSKEMLE--EAISEYK 590
DR LS G++ RL + P LL+LDEP N + E+ E + E
Sbjct: 137 ADRPAGELSYGQQRRLEIARALATDPK-LLLLDEPAAGLNPEETE--ELAELIRELRERG 193
Query: 591 GTVITVSHDRYFVKQIVNRVV 611
TV+ V HD V + +RV
Sbjct: 194 ITVLLVEHDMDVVMSLADRVT 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 92.9 bits (232), Expect = 2e-21
Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 35/170 (20%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + ++LF +LT+ GE A++G NG GK+TLLK IMGL PR G +
Sbjct: 2 EVENLNAGYGKSQILFG-VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 485 EHNV---------------LPNYFEQNQAEALDLDKTVLE-------TVAEAAEDWRIDD 522
++ +P + + + TV E A R++
Sbjct: 61 GRDITGLPPHERARAGIGYVP------EGRRIFPELTVEENLLLGAYARRRAKRKARLER 114
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
+ L R + + LSGGE+ LA + M +P LL+LDEP+
Sbjct: 115 VYELFPRL---KERRKQLAGTLSGGEQQMLAIARALMSRPK-LLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 53/229 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++E +SKS+ GV VL+D+ V+KGE V ++G +G GK+T LR+IAG E+P SG V
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAVDDM 210
I ++ QE + TV + +E+ GK E ++A E
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG----LELRGKSKAEARERAKE------ 113
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
LL+ L A D+ S G + R+++
Sbjct: 114 -----LLELVGL---------------------------AGFEDKYPHQLSGGMRQRVAI 141
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHD 315
+ L P LLLLDEP LD T E L + +++++HD
Sbjct: 142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 55/210 (26%), Positives = 77/210 (36%), Gaps = 52/210 (24%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE- 485
KN+ + + + + GE AI+GPNG GK+TLL L+ G P G+V LLG
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRR 94
Query: 486 ---------------------HN-----------VLPNYFEQNQAEALDLDKTVLETVAE 513
H VL +F DL L
Sbjct: 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQW 154
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
E + DR LS GE+ R+ + +VK LL+LDEP
Sbjct: 155 LLELLGAKHLA-------------DRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQG 201
Query: 574 LDIPSKEML-----EEAISEYKGTVITVSH 598
LD+ ++E L E A S ++ V+H
Sbjct: 202 LDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 3e-21
Identities = 53/203 (26%), Positives = 92/203 (45%), Gaps = 38/203 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRA---------NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
++ +KNL+ + F + + +I+ GE ++G +GCGKSTL +LI+GL
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
E+P GE+ FE L ++ R + + LL +
Sbjct: 63 EEPTSGEI----------LFEGKDITKLSKEE-------------RRERVLELLEKVGLP 99
Query: 534 ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISE 588
+ L R LSGG++ R+ + + P L+V DEP + LD+ + +L++ E
Sbjct: 100 EEFLYRYPHELSGGQRQRIGIARALALNPK-LIVADEPVSALDVSVQAQILNLLKDLQEE 158
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T + +SHD V+ I +R+
Sbjct: 159 LGLTYLFISHDLSVVRYISDRIA 181
|
Length = 268 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 3e-21
Identities = 55/200 (27%), Positives = 84/200 (42%), Gaps = 38/200 (19%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ +NL +R LF+ + T+ GE I GPNG GK+TLL+++ GL +P GEV
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 484 GEH-NVLPNYFEQN-----QAEALDLDKTVLE---------------TVAEAAEDWRIDD 522
GE + + Q + + T LE T+ EA
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV---- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
GL G D V LS G++ R+A + + P+ L +LDEP LD +L
Sbjct: 119 --GLAGL-------EDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL 169
Query: 583 EEAISEY---KGTVITVSHD 599
++ + G V+ +H
Sbjct: 170 TALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 91.8 bits (229), Expect = 5e-21
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++K+YK + D++ V KGE GL+G NGAGKTT L+++ G+ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
++ + S +F + F +E+ + + + R
Sbjct: 61 INGYSI----RTDRKAARQSLGYCPQFDALF-DEL--------------TVREHLRFYAR 101
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L + + + +V L+ LG T D ++ + S G + ++SL L+
Sbjct: 102 L-----------KGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALI 149
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +LLLDEPT+ LD D I + ++ +++ +H + LC +I
Sbjct: 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEV-----RKGRSIILTTHSMDEAEALCDRIA 203
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 91.5 bits (228), Expect = 5e-21
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 48/202 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+LEN++K + VT L D+ ++ GE V L+G +G GKTT LR+IAG EEP SG +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ IA + Q + + TV + AF ++ K E ++ E A
Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI--AFGLKLRKVPKDEIDERVREVA--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
LL LL RK + + S G + R++
Sbjct: 116 -----ELLQIEHLLDRKPKQL------------------------------SGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
LG+ ++++P + L+DEP ++LD
Sbjct: 141 LGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 8e-21
Identities = 59/304 (19%), Positives = 114/304 (37%), Gaps = 77/304 (25%)
Query: 63 QSDVESLFSS----------SADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--- 109
E + S+ +A + + G + + N+SK Y
Sbjct: 236 TGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKG 295
Query: 110 --------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
V + DV++++++GE +GLVG +G+GK+T RI+AG P SG++I
Sbjct: 296 LFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ + +++ F ++ TV +
Sbjct: 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI-------------------------- 389
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L L + + A+V++L+ +G + DR S G + R
Sbjct: 390 ----LAEPLRIHGGGSGAERR--------ARVAELLELVGLPPEFLDRYPHELSGGQRQR 437
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + L +P LL+LDEP + LD + L+ + + + ISHD A + +
Sbjct: 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA 497
Query: 324 TKIV 327
++
Sbjct: 498 DRVA 501
|
Length = 539 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 8e-21
Identities = 56/200 (28%), Positives = 91/200 (45%), Gaps = 16/200 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +L Y + + + +L +++GE +GPNG GK+T +K+I+GL KP GE+
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 485 EHNVLPNYFEQNQAEALDLDK-------TVLETVAEAAEDWRIDD--IKGLLGRCNFKAD 535
+ N + AL ++ T E + A I I +L K
Sbjct: 61 GKSYQKNIEALRRIGAL-IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDS 119
Query: 536 MLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EAISEYKG 591
+KV S G K RL + P LL+LDEPTN LD KE+ E ++ +
Sbjct: 120 A-KKKVKGFSLGMKQRLGIALALLGNPD-LLILDEPTNGLDPDGIKELRELILSLRDQGI 177
Query: 592 TVITVSHDRYFVKQIVNRVV 611
TV+ SH ++++ +R+
Sbjct: 178 TVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 8e-21
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 44/242 (18%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + N+S Y G L +V+ E+++GE +G+VG +G+GK+T R++AG E+P SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + + ++ K ++ V + S+++ +
Sbjct: 64 I----------------------LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GR+L E + L ++++L+ ++G DR S G + R+++ +
Sbjct: 102 GRILSE------PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155
Query: 274 LLQDPDLLLLDEPTNHLDLDT--------IEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L+ +P LL+LDEPT+ LD+ +E + + + ISHD A ++ +C +
Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER----GLTYLFISHDLALVEHMCDR 211
Query: 326 IV 327
I
Sbjct: 212 IA 213
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 9e-21
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++LEN+SK+Y G +LKD++ + G+++GLVG NGAGK+T L++IAG+ EPD G +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTW 59
Query: 158 KSNMKIAFLSQ 168
S +KI + Q
Sbjct: 60 GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 9e-21
Identities = 61/202 (30%), Positives = 100/202 (49%), Gaps = 29/202 (14%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PN 491
YE L +L + GE AI+GP+G GKSTLL LI G +P G + + + +
Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67
Query: 492 Y-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
Y F++N L TV + + A + ++ D +G AD
Sbjct: 68 YQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG----IAD 120
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEML---EEAISEYKG 591
LDR LSGG++ R+A + +V+P+ +L+LDEP + LD + +EML ++ SE +
Sbjct: 121 YLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQR 180
Query: 592 TVITVSHDRYFVKQIVNRVVEV 613
T++ V+H + I +++ V
Sbjct: 181 TLLMVTHHLSDARAIASQIAVV 202
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 9e-21
Identities = 62/211 (29%), Positives = 103/211 (48%), Gaps = 29/211 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ IKNL + D + +LT+++GE IIGP+G GKSTLL+ I LE+P G +++
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 485 EHNVLPNYFEQN----------QAEALDLDKTVLETVAEA-------AEDWRIDDIKGLL 527
+ + N Q L TVLE + A ++ + LL
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELL 120
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEE-- 584
+ AD D + LSGG++ R+A + + P +L DEPT+ LD P E++ E
Sbjct: 121 EKVGL-ADKADAYPAQLSGGQQQRVAIARALAMNPKVML-FDEPTSALD-P--ELVGEVL 175
Query: 585 ----AISEYKGTVITVSHDRYFVKQIVNRVV 611
++E T++ V+H+ F +++ +RV+
Sbjct: 176 DVMKDLAEEGMTMVVVTHEMGFAREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 1e-20
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 66/256 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++++N+S S+ V L DV++ +KKGE +GLVG +G+GK+T R I G +P SG+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 154 VI---KAKSNM----------KIAFLSQEFEVSMS-----RTVREEFMSAFKEEMEIAGK 195
+I K + +I + Q+ MS T+ E E + I GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQD---PMSSLNPRMTIGE----QIAEPLRIHGK 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
L + + E V L+ +G + +R
Sbjct: 115 LSKKEARKE---------------------------------AVLLLLVGVGLPEEVLNR 141
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVI 311
S G + R+++ + L +P LL+ DEPT+ LD+ ++ L+ + + ++
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
Query: 312 ISHDRAFLDQLCTKIV 327
I+HD + ++ ++
Sbjct: 202 ITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 1e-20
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 64/244 (26%)
Query: 100 LENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ENIS SYK T +L D++ ++ GE + L G NGAGKTT +I+AG + SG++
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 155 --IKAKSNMK-IAFLSQE-----FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
IKAK K I ++ Q+ F S VREE + K E+ E+ +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDS----VREELLLGLK---ELDAGNEQAET----- 109
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L + DL K +R S S G +
Sbjct: 110 ---------VLKDLDLYALK---------------------------ERHPLSLSGGQKQ 133
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
R+++ LL DLL+ DEPT+ LD ++ + L L Q +++I+HD FL ++C
Sbjct: 134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC 193
Query: 324 TKIV 327
+++
Sbjct: 194 DRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 1e-20
Identities = 60/207 (28%), Positives = 97/207 (46%), Gaps = 23/207 (11%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+K + + D + N +L++ GE AI GP+GCGKSTLLK++ L P G +L
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 486 HNVL---PNYFEQNQAEALDLDKTVLETVAEAAED-----WRI-------DDIKGLLGRC 530
+V P + Q + +TV ED W+I LL R
Sbjct: 65 EDVSTLKPEAYRQQVSYCAQTPALFGDTV----EDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY- 589
+L + ++ LSGGEK R+A + + +L+LDE T+ LD +K +EE I Y
Sbjct: 121 ALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180
Query: 590 ---KGTVITVSHDRYFVKQIVNRVVEV 613
V+ ++HD+ + ++V+ +
Sbjct: 181 REQNVAVLWITHDKDQAIRHADKVITL 207
|
Length = 223 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-20
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
G++L +S S G ++ V G GL+G NG+GK+T LR++AG PD+G V
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
A ++ +SR R ++ +++ + A L V D+ +GR
Sbjct: 61 AGVDLH----------GLSRRARARRVALVEQDSDTAVPL---------TVRDVVALGR- 100
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ R A + A V + + + DR +++ S G + R+ + + L Q
Sbjct: 101 -----IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQ 154
Query: 277 DPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+P LLLLDEPTNHLD L+T+ + V +V HD C +V
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATG-VTVVAALHDLNLAASYCDHVV 208
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 23/194 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ Y + + +L I+ GE ++GP+GCGK+TLL+LI G E P GE+LL
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 485 E---HNVLPNYFEQN---QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
N+ P+ N Q AL TV E +A +A R+ + L+
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEE--AI 586
+ +RK S LSGG++ R+A + +V +L+LDEP LD+ K+M E +
Sbjct: 121 EGYA----NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL 176
Query: 587 SEYKG-TVITVSHD 599
+ G T + V+HD
Sbjct: 177 QKELGITFVFVTHD 190
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 2e-20
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 66/253 (26%)
Query: 98 VKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++LEN+SK++ VT L DV+ E+ KGE G++G +GAGK+T LR+I E P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 153 NV------IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
+V + A S KI + Q F + SRTV E +E+AG K E
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP----LELAGVPKAE 117
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
Q+ E LL+ L +D DR
Sbjct: 118 IKQRVAE-----------LLELVGL---------------------------SDKADRYP 139
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
A S G + R+++ + L +P +LL DE T+ LD +T +E L+ + + +V+I+
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199
Query: 314 HDRAFLDQLCTKI 326
H+ + ++C ++
Sbjct: 200 HEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 90.8 bits (226), Expect = 2e-20
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 49/238 (20%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
LKD+++E+ KGE+VG++G NGAGK+T L++IAG +P SG V K K+A L
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV---KVTGKVAPL 93
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
E+ F E+ + +++ L G +L L RK
Sbjct: 94 ---IELGAG----------FDPEL--------------TGRENIYLRGLILG----LTRK 122
Query: 227 AQAVNLDTLDAKVSKLM--PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+D KV +++ ELG D D+ V ++SSG R++ +PD+LLLD
Sbjct: 123 E-------IDEKVDEIIEFAELG---DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172
Query: 285 EPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
E D E L +++ +V++SHD + Q C + + E G R
Sbjct: 173 EVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 3e-20
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 55/232 (23%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+++ N+SK+Y G VT L+D++ V++GE V LVG +G GK+T LRIIAG E P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 154 VI-----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
V+ ++ Q+ + TV + A E++ K E ++A E
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV--ALGLELQGVPKAEARERAEE---- 114
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMR 267
LL+ L + P +L S G + R
Sbjct: 115 -------LLELVGL--------------SGFENAYPHQL--------------SGGMRQR 139
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
++L + L DPD+LLLDEP + LD E L + +++++HD
Sbjct: 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.3 bits (225), Expect = 3e-20
Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 47/251 (18%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ +SK + G+T + DV+ EV+ GE VGL+G NGAGKTT +I G +P SG V
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSA--FKEEMEIAGKLERVQKALES 205
I +IA L Q + TV E + + R +K
Sbjct: 66 RDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A + LL+ L + DR + S G Q
Sbjct: 126 A---RERARELLEFVGLGELA---------------------------DRPAGNLSYGQQ 155
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321
R+ + + L P LLLLDEP L+ + E L + + V +++I HD +
Sbjct: 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG 215
Query: 322 LCTKIVETEMG 332
L +IV G
Sbjct: 216 LADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.5 bits (225), Expect = 3e-20
Identities = 65/209 (31%), Positives = 99/209 (47%), Gaps = 39/209 (18%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL GY + + N +L++ G+ TA+IGPNGCGKSTLLK L P+ G V LG
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 485 EHNVLPNYFEQNQAEALDL---------DKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ + + A L L TV E VA W L GR + +
Sbjct: 63 D-KPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWL-----SLWGRLSAEDN 116
Query: 534 ------------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-- 579
+ DR+++ LSGG++ R + + + +++LDEPT +LDI +
Sbjct: 117 ARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVE 176
Query: 580 --EMLEEAISEYKGTVITVSHD-----RY 601
++ E ++ K TV+TV HD RY
Sbjct: 177 LMRLMRELNTQGK-TVVTVLHDLNQASRY 204
|
Length = 255 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 3e-20
Identities = 61/206 (29%), Positives = 85/206 (41%), Gaps = 37/206 (17%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL R L + +LT+ GE AI+GPNG GKSTLL+ + G P GEV L
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 484 GEHN--------------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG--LL 527
VLP Q +L TV E VA + + L+
Sbjct: 62 NGRPLADWSPAELARRRAVLP------QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 528 GRCNFKADML---DRKVSLLSGGEKARLAFCKFMV-------KPSTLLVLDEPTNHLDIP 577
+ D+ R LSGGE+ R+ + + P LL LDEPT+ LD+
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLL-LDEPTSALDLA 174
Query: 578 SK----EMLEEAISEYKGTVITVSHD 599
+ + + E VI V HD
Sbjct: 175 HQHHVLRLARQLAHERGLAVIVVLHD 200
|
Length = 258 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 4e-20
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ISKS+ GV L V+ V+ GE L+G NGAGK+T ++I++G PDSG
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-----L 212
+I + S R + AG + V + L S V ++
Sbjct: 64 ----EILIDGKPVAFSSPR------------DALAAG-IATVHQEL-SLVPNLSVAENIF 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLG 271
+GR R+ ++ + + +L+ LG D D LV S Q +M +
Sbjct: 106 LGR------EPTRRFGLIDRKAMRRRARELLARLGLD-IDPDTLVGDLSIA-QRQMVEIA 157
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH--DRAFLDQLCTKI 326
+ L D +L+LDEPT L + E L L Q V ++ ISH D F ++ +I
Sbjct: 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF--EIADRI 215
Query: 327 V 327
Sbjct: 216 T 216
|
Length = 500 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 5e-20
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 44/222 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ IKNL + D+ + +L++E+GE IIGP+G GKSTLL+ + GLE+P G +
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 483 LGEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-----------AEDW 518
+ +V L TVLE V A A +
Sbjct: 61 VDGEDVGDK----KDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK 116
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIP 577
++ LL + AD D + LSGG++ R+A + + P +L DEPT+ LD P
Sbjct: 117 ALE----LLEKVGL-ADKADAYPAQLSGGQQQRVAIARALAMDPKVML-FDEPTSALD-P 169
Query: 578 SKEMLEE------AISEYKGTVITVSHDRYFVKQIVNRVVEV 613
E++ E ++E T+I V+H+ F +++ +RV+ +
Sbjct: 170 --ELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFM 209
|
Length = 240 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 5e-20
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L D++W+V GE +VG NGAGKTT L ++ G+ P SG+V
Sbjct: 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT---- 89
Query: 160 NMKIAFLSQEF-EVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
L + F + +R+ +S E+ + + + L G
Sbjct: 90 -----LLGRRFGKGETIFELRKRIGLVS-----SELHERFRVRETVRDVV-----LSG-F 133
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ Q A +L L+ LG DR S S G Q R+ + + L++
Sbjct: 134 FASIGIYQEDLTAEDLA----AAQWLLELLGAKHLA-DRPFGSLSQGEQRRVLIARALVK 188
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP-----MVIISH 314
DP+LL+LDEP LDL E L L + ++ ++H
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 6e-20
Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ NISK + L DV EV G V L+G +G+GK+T LRIIAG E+PDSG +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 156 -KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + KI F+ Q + + TVR+ IA LE
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRD----------NIAFGLE------------ 98
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + + A+V +L+ + GDR S G + R++
Sbjct: 99 ------------IRKHPKAKIK-----ARVEELLELVQLEG-LGDRYPNQLSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L +P +LLLDEP LD + WL + V V ++HD+ ++ +
Sbjct: 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200
Query: 326 IVETEMG 332
IV G
Sbjct: 201 IVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 7e-20
Identities = 64/241 (26%), Positives = 107/241 (44%), Gaps = 71/241 (29%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SKS+ T + D++ ++KKGE V L+G +G GKTT LR+IAG E+P SG ++
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65
Query: 156 -KAKSNMKIAFLSQEFEVSM---------SRTVRE------EFMSAFKEEMEIAGKLERV 199
+ +++ ++ + M TV E + K+ EI RV
Sbjct: 66 GEDITDVPP----EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA-EIK---ARV 117
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ALE L+G L+ F DR
Sbjct: 118 EEALE-------LVG--LEGF--------------------------------ADRKPHQ 136
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
S G Q R++L + L+ +P +LLLDEP + LD + L+ + + V ++HD
Sbjct: 137 LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
Query: 316 R 316
+
Sbjct: 197 Q 197
|
Length = 352 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 9e-20
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
EN+ K Y ++ V++ V++GE GL+G NGAGKTT ++++ +P SG A +
Sbjct: 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+ V R VR + I + V L + +++ + RL
Sbjct: 64 V----------VREPREVRRR--------IGIVFQDLSVDDEL-TGWENLYIHARL---- 100
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
V ++ +L+ +G + DRLV ++S G + R+ + + L+ P++
Sbjct: 101 -------YGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
Query: 281 LLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
L LDEPT LD T E++E + + +++ +H +QLC ++
Sbjct: 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.1 bits (224), Expect = 1e-19
Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 26/213 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N++ + + +L I+ GE A++GP+G GKSTLL++I GLE P G + L
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 485 EHNVLPNYFEQNQAE----------ALDLDKTVLETVA-------EAAEDWRIDD-IKGL 526
VL + + AL TV + +A E + I ++ L
Sbjct: 63 -GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEEL 121
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM--- 581
L + DR + LSGG++ R+A + + V+P LL LDEP LD KE+
Sbjct: 122 LRLVQL-EGLADRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRKELRRW 179
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
L + T + V+HD+ ++ +RVV +
Sbjct: 180 LRKLHDRLGVTTVFVTHDQEEALELADRVVVLN 212
|
Length = 345 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 69/256 (26%)
Query: 98 VKLENISKSY----------------------KGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
++LEN+SKSY LKDV++EV +GE++GL+G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 136 KTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195
K+T LR++AG PDSG V +++ L F E+
Sbjct: 61 KSTLLRLLAGIYPPDSGTV---TVRGRVSSLL-------------GLGGGFNPEL----- 99
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
+ +++ L GRLL L +++ + ++ ELG D D
Sbjct: 100 ---------TGRENIYLNGRLL---GLSRKEIDEKIDEIIE------FSELG---DFIDL 138
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPT----NHLDLDTIEWLEGYLGKQDVPMVI 311
V ++SSG + R++ +PD+LL+DE L L KQ +++
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVIL 197
Query: 312 ISHDRAFLDQLCTKIV 327
+SHD + + +LC + +
Sbjct: 198 VSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 1e-19
Identities = 63/198 (31%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 429 NLEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---- 483
L E RL + + E T I G +G GKSTLL+ I GLEKP GG ++L
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV 60
Query: 484 ---GEHNV-LPNY-------FEQNQAEALDLDKTVLETVA------EAAED-WRIDDIKG 525
+ LP F+Q AL V E +A ED +D++
Sbjct: 61 LFDSRKKINLPPQQRKIGLVFQQY---ALFPHLNVRENLAFGLKRKRNREDRISVDELLD 117
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM---- 581
LLG +L+R + LSGGEK R+A + + LL+LDEP + LD +
Sbjct: 118 LLGL----DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPE 173
Query: 582 LEEAISEYKGTVITVSHD 599
L++ VI V+HD
Sbjct: 174 LKQIKKNLNIPVIFVTHD 191
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 49/199 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
EN++KSYK V+ DV+ EV GE VGL+G NGAGKTT +I G PDSG +
Sbjct: 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 155 -------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ ++ + I +L QE + TV + M+ LE +K L+ A
Sbjct: 66 EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV----------LEIREKDLKKAE 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+L LL+EF + + D S S G + R
Sbjct: 116 RKEEL-DALLEEFHITHLR---------------------------DSKAYSLSGGERRR 147
Query: 268 MSLGKILLQDPDLLLLDEP 286
+ + + L +P +LLDEP
Sbjct: 148 VEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 87.7 bits (218), Expect = 2e-19
Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 37/237 (15%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+S Y LKDV+ E++KGE+V L+G NG+GK+T L+++ G +P SG V+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL- 62
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
V S+ K +E+ K+ V DD +
Sbjct: 63 ---------------------VDGLDTSSEKSLLELRQKVGLVF----QNPDDQLFGPTV 97
Query: 217 LDE--FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
DE F L + + ++ +V++ + +G + DR + S G + R+++ +L
Sbjct: 98 EDEVAFGLENL---GLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVL 153
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM--VIISHDRAFLDQLCTKIV 327
P++LLLDEPT LD L L K ++ +I++HD + + ++V
Sbjct: 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 2e-19
Identities = 61/199 (30%), Positives = 94/199 (47%), Gaps = 33/199 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---------EHNVL-- 489
N + +++ GE +IGPNG GK+TL+ +I G +P+ GEVL EH +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81
Query: 490 --------PNYFE-----QNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFK 533
P FE +N AL+ DK+V ++ A E RID++ +G
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL---- 137
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
D DR +LLS G+K L + + LL+LDEP + E E + G
Sbjct: 138 GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKH 197
Query: 592 TVITVSHDRYFVKQIVNRV 610
+++ V HD FV++I ++V
Sbjct: 198 SILVVEHDMGFVREIADKV 216
|
Length = 249 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-19
Identities = 48/175 (27%), Positives = 73/175 (41%), Gaps = 15/175 (8%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLPNYFE 494
R+LF + T+ GE + GPNG GK+TLL+++ GL +P GEV +
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPH 72
Query: 495 QNQAEALDLD--KTVLETVAEAAEDWRID------DIKGLLGRCNFKADMLDRKVSLLSG 546
+N L K L + E W I+ L D + LS
Sbjct: 73 RNILYLGHLPGLKPEL-SALENLHFWAAIHGGAQRTIEDALAAVGL-TGFEDLPAAQLSA 130
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSH 598
G++ RLA + + + L +LDEPT LD +L + + G V+ +H
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 91.7 bits (228), Expect = 2e-19
Identities = 65/238 (27%), Positives = 112/238 (47%), Gaps = 42/238 (17%)
Query: 387 SAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY-EDRLLFNR 442
+AE+ E L EE ++ P + I F +N+ F Y + +
Sbjct: 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEF-------------ENVSFSYPGKKPVLKD 347
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN---Y 492
+ +IE GEK AI+GP+G GKSTL+KL++ L P GE+L+ ++ L
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGI 407
Query: 493 FEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADM---LDRKV----S 542
Q + L T+ E +A A D I++ L F A++ D V
Sbjct: 408 VSQ---DPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGV 464
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
LSGG++ RLA + +++ +L+LDE T+ LD ++ ++++A+ + T + ++H
Sbjct: 465 NLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 2e-19
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIA 164
K Y + V ++V++GE G +G NGAGKTT +R++ P SG A ++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--- 57
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
V R VR I + V + L + +++++MGRL L
Sbjct: 58 -------VREPRKVRRSIG--------IVPQYASVDEDL-TGRENLEMMGRLYG----LP 97
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + + +L+ + DR V ++S G + R+ + L+ PD+L LD
Sbjct: 98 KDE-------AEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149
Query: 285 EPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
EPT LD T + Y L ++ V +++ +H D+LC +I
Sbjct: 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 3e-19
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 48/205 (23%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ I+K + GV DV+ VKKGE L+G NGAGK+T ++I+ G +PDSG +
Sbjct: 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + I + Q F + + TV E +
Sbjct: 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENII---------------------- 101
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+G + L+ R+ A++ +L G D D VA S G Q
Sbjct: 102 -------LGLEPSKGGLIDRRQAR-------ARIKELSERYGLPVDP-DAKVADLSVGEQ 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHL 290
R+ + K L + LL+LDEPT L
Sbjct: 147 QRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 3e-19
Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 40/174 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ +L++ RGE A++G NG GKSTL+K++ GL KP GE+L+ V + +A
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA----SPRDA 72
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
G+ V LS GE+ + + + +
Sbjct: 73 RRA---------------------GI------------AMVYQLSVGERQMVEIARALAR 99
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ LL+LDEPT L E L + I + VI +SH V +I +RV
Sbjct: 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVT 153
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 4e-19
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 62/249 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++++N+ KS+ VLK + VKKGE V ++G +G+GK+T LR I EEPDSG +I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K N+ K+ + Q+F + TV E A +V+
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA----------PIKVKG---- 106
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
KA+A + + +L+ ++G AD D A S G Q
Sbjct: 107 ------------------MSKAEA------EERALELLEKVGL-ADKADAYPAQLSGGQQ 141
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+++ + L +P ++L DEPT+ LD LD ++ L ++ + MV+++H+ F
Sbjct: 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMVVVTHEMGF 197
Query: 319 LDQLCTKIV 327
++ +++
Sbjct: 198 AREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 61/206 (29%), Positives = 85/206 (41%), Gaps = 40/206 (19%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
N +L + GE +IGPNG GK+TL LI G KP G V+ ++ LP +
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLG 80
Query: 493 ----FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK--------------- 533
F Q L TVLE VA A + GLLGR +
Sbjct: 81 IARTF-QITRLFPGL--TVLENVAVGAHARL--GLSGLLGRPRARKEEREARERARELLE 135
Query: 534 ----ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
++ DR LS G++ RL + + LL+LDEP L+ E L E I
Sbjct: 136 FVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL 195
Query: 587 -SEYKGTVITVSHDRYFVKQIVNRVV 611
T++ + HD V + +R+V
Sbjct: 196 RDRGGVTILLIEHDMKLVMGLADRIV 221
|
Length = 250 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 4e-19
Identities = 57/199 (28%), Positives = 94/199 (47%), Gaps = 28/199 (14%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y R + +LTI G+ A++G +GCGKST++ L+ P GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
LL ++ P F+ AE E V EAA+ I D
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
I L + ++ + S LSGG+K R+A + +++ +L+LDE T+ LD S+++
Sbjct: 121 FIMSLPDGYD---TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177
Query: 582 LEEAISEYKG--TVITVSH 598
++EA+ T I ++H
Sbjct: 178 VQEALDRAMKGRTTIVIAH 196
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 4e-19
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 65/252 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK + VT LKDV+ V KGE G++G +GAGK+T +R I G E P SG+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ +++ +I + Q F + SRTV E +EIAG K E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP----LEIAGVPKAEI 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ LE LL+ L D D A
Sbjct: 118 EERVLE-----------LLELVGL---------------------------EDKADAYPA 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G + R+ + + L +P +LL DE T+ LD +T + L + + +V+I+H
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
Query: 315 DRAFLDQLCTKI 326
+ + ++C ++
Sbjct: 200 EMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 6e-19
Identities = 57/194 (29%), Positives = 96/194 (49%), Gaps = 25/194 (12%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ +L I +GE + GP+G GK+TLLKL+ G P G+V + +V L
Sbjct: 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSL- 543
F+ + L D+TV E VA E + +I+ +G + + + +
Sbjct: 79 RRIGVVFQDFR---LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135
Query: 544 --LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVSH 598
LSGGE+ R+A + +V LL+ DEPT +LD S+ +L+ + +++ TVI +H
Sbjct: 136 EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATH 195
Query: 599 DRYFVKQIVNRVVE 612
D V ++ +RV+
Sbjct: 196 DLSLVDRVAHRVII 209
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 6e-19
Identities = 108/527 (20%), Positives = 194/527 (36%), Gaps = 132/527 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ + I KS+ V LK V V GE L+G NGAGK+T +++++G EP G +
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 156 ---------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
K + + I + QE V TV E G+ +K
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY---------IGRHL-TKKVCGVN 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ D M R A+ L + KV D D VA+ S +
Sbjct: 116 IIDWREM-----------RVRAAMMLLRVGLKV------------DLDEKVANLSISHKQ 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYLGKQDVPMVIISHDRAFLDQLC 323
+ + K L+ D ++++DEPT+ L +++L L K+ +V ISH A + ++C
Sbjct: 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC 212
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+ V++ + + S + D+ N
Sbjct: 213 DRYT-----------------VMKDGSSVCS---------GMV---SDVSN--------- 234
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV-TIKNLEFGYEDRLLFNR 442
+ RL +++ F + V ++N+ DR
Sbjct: 235 ------DDIVRLMVGRELQNRFNAMK-----ENVSNLAHETVFEVRNVT--SRDRKKVRD 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------------ 484
+ ++ RGE G G G++ L+ + G++K GGE+ L
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341
Query: 485 -------EHNVLPNY-FEQNQAEALDLD----KTVLETVAEAAEDWRIDDIKGLLGRCNF 532
++ PN+ QN A + L K + E E ++ + LL
Sbjct: 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL---AL 398
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
K +++ ++ LSGG + ++ K++ +++ DEPT +D+ +K
Sbjct: 399 KCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAK 445
|
Length = 510 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 7e-19
Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 32/198 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489
N +L ++ GE IIGPNG GK+T++ +I G +P G VL G ++
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 490 -------PNYFE-----QNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKA 534
P FE +N AL DK+V ++ A E RI+++ +G A
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL----A 134
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--T 592
D DR LLS G+K L +++ LL+LDEP + E E + G +
Sbjct: 135 DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHS 194
Query: 593 VITVSHDRYFVKQIVNRV 610
V+ V HD FV+ I ++V
Sbjct: 195 VVVVEHDMEFVRSIADKV 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 1e-18
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ ++KS+ +L V +V +GE + ++G +G+GK+T LR+I G PD G +
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68
Query: 155 ---IKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
I S ++ L Q+ + S TV E +E KL E
Sbjct: 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE----HTKLP------E 118
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
S + ++ LM K + V L A L P + S G
Sbjct: 119 SLIRELVLM------------KLELVGLRGAAA---DLYP-------------SELSGGM 150
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISHDRAFLD 320
+ R++L + + DP+LL LDEPT+ LD I+ L L + +++++HD L
Sbjct: 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL 210
Query: 321 QLCTKIV 327
+ ++
Sbjct: 211 TIADRVA 217
|
Length = 263 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-18
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 60/247 (24%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L+NISK + +L D+ ++KG+ ++G +G+GK+T L II E+ DSG V
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 156 -------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K S K+ +L Q F + + TV +E +++ K +++ K
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETV--------EENLDLGLKYKKLSK---- 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+ + L++ L + Q K+ +L S G Q
Sbjct: 109 -KEKREKKKEALEKVGLNLKLKQ---------KIYEL------------------SGGEQ 140
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + +L+ P L+L DEPT LD ++ L L + ++I++HD Q
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE-LNDEGKTIIIVTHDPEVAKQ 199
Query: 322 LCTKIVE 328
+++E
Sbjct: 200 -ADRVIE 205
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 1e-18
Identities = 126/561 (22%), Positives = 220/561 (39%), Gaps = 147/561 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ +ISK Y GV VLK + + + GE L+G NGAGK+T ++IIAG PDSG + I
Sbjct: 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG 71
Query: 157 AKS----------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ I + QE + + +V+E + + K++++ AL
Sbjct: 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+D LD + A +L+ D ++ +++
Sbjct: 132 LD--------LD--------SSAGSLEVADRQIVEIL----------------------- 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLC 323
+ L++D +L+LDEPT L E L L Q V +V ISH + QL
Sbjct: 153 -----RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLA 207
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+I V R +G A + ++ T D+I + A
Sbjct: 208 DRI-----SVMR--DG----------------TIALSGKTADLS-TDDIIQAITPAAREK 243
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEF-GYEDRLLFNR 442
S+++K +E P R+Q P V+T+++L G+ +
Sbjct: 244 SLSASQKL--------WLELPGNRRQQAAGAP--------VLTVEDLTGEGFRN------ 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------- 488
+L + GE + G G G++ L + + GL RGG ++L +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341
Query: 489 -LPNYFEQNQAEALDLDKTV---------------LETVAEAAEDWRIDDIKGLLGRCNF 532
LP E Q+ L LD + ++ E A ++ + L
Sbjct: 342 YLP---EDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENA---VLERYRRALN---I 392
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE---MLEEAISEY 589
K + ++ LSGG + ++ K + LL++DEPT +D+ ++ L +I+
Sbjct: 393 KFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452
Query: 590 KGTVITVSHDRYFVKQIVNRV 610
V+ +S D ++Q+ +RV
Sbjct: 453 NVAVLFISSDLEEIEQMADRV 473
|
Length = 510 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 1e-18
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 29/214 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+TI+N+ Y +++ + +L I +G T+IIGPNG GKSTLL ++ L K GE+ +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 485 EHNVLPNYFEQNQAEALDLDK---------TVLETVA----------EAAEDWRIDDIKG 525
+ + + A+ L + K TV + V ED RI I
Sbjct: 62 GLEL-TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI--INE 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV-LDEPTNHLDIP-SKEM-- 581
+ + + D+ DR + LSGG++ R AF ++ T V LDEP N+LD+ S ++
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQRQR-AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMK 176
Query: 582 -LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
L E T++ V HD F + +V +K
Sbjct: 177 ILRRLADELGKTIVVVLHDINFASCYSDHIVALK 210
|
Length = 252 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 1e-18
Identities = 60/187 (32%), Positives = 79/187 (42%), Gaps = 41/187 (21%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYF 493
+ + GE ++GPNG GKSTLL + GL P G + + Y
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 494 EQNQAEA--------LDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q Q L L DKT E VA A ++++ LG D L R V+
Sbjct: 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEALGL----DDKLGRSVN 125
Query: 543 LLSGGE--KARLAFCKFMVKP-----STLLVLDEPTNHLDIPSKEMLEEAISEY---KGT 592
LSGGE + RLA V P LL+LDEP N LD+ + L+ +SE
Sbjct: 126 QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIA 185
Query: 593 VITVSHD 599
V+ SHD
Sbjct: 186 VVMSSHD 192
|
Length = 248 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-18
Identities = 59/214 (27%), Positives = 93/214 (43%), Gaps = 29/214 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLL 483
IK+L E + + NLT++ GE AI+GPNG GKSTL IMG + GE+L
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65
Query: 484 GEHNVL---PNYFE----------QNQAE-----ALDLDKTVLETVAEAAEDWR--IDDI 523
++L P+ E Q E D + + A I ++
Sbjct: 66 DGEDILELSPD--ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 524 KGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
K + L+R V+ SGGEK R + ++ L +LDEP + LDI + +++
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIV 183
Query: 583 EEAISEYKG---TVITVSHDRYFVKQIVNRVVEV 613
E I+ + V+ ++H + + I V V
Sbjct: 184 AEGINALREEGRGVLIITHYQRLLDYIKPDKVHV 217
|
Length = 251 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-18
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 55/246 (22%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N+S SY + L +V+ ++ GEKV ++G G+GK+T L+++AG +P SG+V+
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++++ I ++ Q+ + T+R+ ER+ +A E
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTL-FYGTLRDNITLGAPL-----ADDERILRAAEL 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + DL ++G + G L S G +
Sbjct: 117 AGVT-DFVNKHPNGLDL----------------------QIG---ERGRGL----SGGQR 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
++L + LL DP +LLLDEPT+ +D+++ E L LG D ++II+H + LD
Sbjct: 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD- 203
Query: 322 LCTKIV 327
L +I+
Sbjct: 204 LVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-18
Identities = 36/119 (30%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEA 514
STLLKLI GL +P G +LL + + Q L + TV E +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 515 A-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
+ + L R + V LSGG+K R+A + ++K LL+LDEPT
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 84.1 bits (209), Expect = 2e-18
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L + + NLTI++GE A++GPNG GKSTL K IMG K GE+L
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF 61
Query: 484 GEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKADMLDRKVS 542
++ L ++ + A I +K AD L R V+
Sbjct: 62 KGEDIT----------DLPPEERARLGIFLAFQYPPEIPGVK--------NADFL-RYVN 102
Query: 543 L-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSH 598
SGGEK R + ++ L +LDEP + LDI + ++ E I++ + +V+ ++H
Sbjct: 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162
Query: 599 DRYFVKQIVNRVVEV 613
+ + I V V
Sbjct: 163 YQRLLDYIKPDRVHV 177
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 2e-18
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 60/214 (28%)
Query: 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++EN+SK+Y G LKDV+ + GE V L+G +GAGK+T LR + G EP SG+V+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 156 ---------KAKSNM--KIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLE 197
KA + +I + Q+F + +V E S ++ + K E
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ Q+AL L+ L LD + +L
Sbjct: 122 K-QRALA-----------ALERVGL---------LDKAYQRADQL--------------- 145
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P L+L DEP LD
Sbjct: 146 ---SGGQQQRVAIARALMQQPKLILADEPVASLD 176
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 2e-18
Identities = 50/171 (29%), Positives = 82/171 (47%), Gaps = 36/171 (21%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + + L +L +ERGE A++G NG GK+TLLK IMGL +PR G ++
Sbjct: 5 EVENLSAGYGKIQALRG-VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63
Query: 485 EHNV--LP----------------NYF-----EQNQAEALDLDKTVLETVAEAAEDWRID 521
++ LP F E+N + + A++ ++
Sbjct: 64 GEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARR------DKEAQERDLE 117
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
++ L R + +++ LSGGE+ LA + M +P LL+LDEP+
Sbjct: 118 EVYELFPRL---KERRNQRAGTLSGGEQQMLAIARALMSRPK-LLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-18
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 327 VETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRA 385
+E E G TY+GNYSQY+ +K +E Q A+EKQQ+EI++ ++ I+R A A+ + +A
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQA 60
Query: 386 SSAEKKLERLQEEEQIEKPFQRKQMKIRF 414
S K LE++ E+IEKP K+ KIRF
Sbjct: 61 QSRIKALEKM---ERIEKP-VEKKPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 2e-18
Identities = 61/233 (26%), Positives = 102/233 (43%), Gaps = 52/233 (22%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N+SK + L DV+ ++ GE V L+G +G+GKTT LR+IAG E PDSG ++
Sbjct: 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 156 --KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ +++ + F+ Q + + TV + AF +
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV--AFGLRV------------------ 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQM 266
+ +++ + AKV +L L D DR A S G +
Sbjct: 102 ---------------KPRSERPPEAEIRAKVHEL---LKLVQLDWLADRYPAQLSGGQRQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
R++L + L +P +LLLDEP LD + L +L + V V ++HD
Sbjct: 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHD 196
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.0 bits (211), Expect = 2e-18
Identities = 62/223 (27%), Positives = 97/223 (43%), Gaps = 33/223 (14%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ +KNL Y + L + NL I +GE AIIGP+G GKSTLL+ + GL P GE
Sbjct: 2 MMIEVKNLSKTYPGGHQALKD-VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 481 VLLGEHNV-------LPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG- 528
+L + L Q L +VLE V + L G
Sbjct: 61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVL-LGRLGYTSTWRSLFGL 119
Query: 529 ----------RCNFKADMLDR---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ +LD+ + S LSGG++ R+A + +V+ +++ DEP LD
Sbjct: 120 FSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLD 179
Query: 576 IPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
S ++L++ E TVI H K+ +R++ +K
Sbjct: 180 PESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222
|
Length = 258 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 89.0 bits (221), Expect = 3e-18
Identities = 60/202 (29%), Positives = 102/202 (50%), Gaps = 27/202 (13%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
+GY +L + +LTI+ KT I+G +G GKSTL KL++G + R GE+LL ++
Sbjct: 483 YGYGSNILSD-ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541
Query: 489 -------LPNYFEQNQAEALDLDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADM---- 536
NY Q E ++LE + A E+ D+I K D+
Sbjct: 542 DRHTLRQFINYLPQ---EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598
Query: 537 ------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEY 589
L + S +SGG+K R+A + ++ S +L+LDE T++LD I K+++ ++
Sbjct: 599 LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNLQ 658
Query: 590 KGTVITVSHDRYFVKQIVNRVV 611
T+I V+H R V + ++++
Sbjct: 659 DKTIIFVAH-RLSVAKQSDKII 679
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.9 bits (205), Expect = 3e-18
Identities = 53/180 (29%), Positives = 77/180 (42%), Gaps = 29/180 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------EHNVLPN 491
N ERGE A++G NG GKSTLL + GL +P+ G VL+ E
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71
Query: 492 YFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ + L V + VA EA + R+ + +G + +R
Sbjct: 72 LVFQDPDDQL-FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR----ERPTH 126
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYKGTVITVSHD 599
LSGGEK R+A + +L+LDEPT LD +E + + TV+ +HD
Sbjct: 127 CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 3e-18
Identities = 68/260 (26%), Positives = 120/260 (46%), Gaps = 53/260 (20%)
Query: 385 ASSAEKKLERL----QEEEQIEKPFQRKQM--KIRFPERGRSGRSVVTIKNLEFGY--ED 436
A +A + L+ L E + + R ++ +I F +N+ F Y ++
Sbjct: 431 AKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEF-------------RNVSFAYPGQE 477
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LP---- 490
+ +LTI GEK AIIG G GKSTLLKL++GL +P G VLL ++ +
Sbjct: 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADL 537
Query: 491 ----NYFEQNQA-------EALDLDKTVL--ETVAEAAEDWRIDDIKGLLGRCNFKADML 537
Y Q+ + + L E + AAE + G+ D L
Sbjct: 538 RRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAE------LAGVTEFVRRHPDGL 591
Query: 538 DRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
D ++ LSGG++ +A + +++ +L+LDEPT+ +D S+E ++ + +
Sbjct: 592 DMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGK 651
Query: 592 TVITVSHDRYFVKQIVNRVV 611
T++ V+H R + +V+R++
Sbjct: 652 TLVLVTH-RTSLLDLVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 3e-18
Identities = 66/219 (30%), Positives = 85/219 (38%), Gaps = 48/219 (21%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN- 487
NL + R L + +L + GE AI+GPNG GKSTLLK + G P GEV L
Sbjct: 6 NLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
Query: 488 -------------VLPNYFEQNQAEALDLDKTVLETV----------AEAAEDWRIDDIK 524
VLP Q +L TV E V E ED RI
Sbjct: 66 NSWPPEELARHRAVLP------QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA-- 117
Query: 525 GLLGRCNFKADML---DRKVSLLSGGEKARLAFCKFM------VKPSTLLVLDEPTNHLD 575
+ D+ R LSGGE+ R+ + + V L LDEPT+ LD
Sbjct: 118 ----QALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD 173
Query: 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611
I + + G V+ V HD Q +R+V
Sbjct: 174 IAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIV 212
|
Length = 259 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 4e-18
Identities = 57/228 (25%), Positives = 94/228 (41%), Gaps = 42/228 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ ++NL + A + +E GE I+G +G GKSTL +MGL
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 478 G----GEVLLGEHNVLPN--------------YFEQNQAEALDLDKTVLETVAEA----- 514
G GEV+L ++L Q+ +L+ T+ + + EA
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 515 --AEDWRIDDIKGLLGRCNFKADML-DRKVSLLSGGEKARL----AFCKFMVKPSTLLVL 567
+ LL + DR LSGG + R+ A KP LL+
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALAL---KPK-LLIA 178
Query: 568 DEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
DEPT LD+ ++ ++L++ E V+ ++HD V ++ +RVV
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVV 226
|
Length = 539 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-18
Identities = 64/234 (27%), Positives = 111/234 (47%), Gaps = 27/234 (11%)
Query: 389 EKKLERLQE--EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLFNRAN 444
E L RL + ++ + ++ E V ++N+ FGY + L +
Sbjct: 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFS 499
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GE------HNVLPN------ 491
LT++ G++ A++G +G GKST+ KL+ GL +P GE+L G VL N
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559
Query: 492 ----YFEQNQAEALDL-DKTVLET-VAEAAEDWRI-DDIKGLLGRCNFKADMLDRKVSLL 544
FE + L L D T+ + + A +D I D I G + L + L
Sbjct: 560 QDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDA---ELAEGGANL 616
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH 598
SGG++ RL + +V+ ++L+LDE T+ LD +++++++ + T I V+H
Sbjct: 617 SGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 4e-18
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 49/249 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + VT L D+++ V+KGE GL+G NGAGKTT +R+I G PDSG V+
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 158 KSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ +I +L +E + V ++ + +L+ ++K E A +D
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVIDQLV--------YLAQLKGLKK--EEARRRID 110
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ +L + + +V +L S G Q ++
Sbjct: 111 ---EWLERLELSEYA---------NKRVEEL------------------SKGNQQKVQFI 140
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
++ DP+LL+LDEP + LD ++ ++ + L + +++ +H +++LC +++
Sbjct: 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200
Query: 329 TEMGVSRTY 337
G + Y
Sbjct: 201 LNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 6e-18
Identities = 61/227 (26%), Positives = 88/227 (38%), Gaps = 48/227 (21%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ G S + I + + + + RGE+ +IG NG GKSTLL+L+
Sbjct: 9 SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 471 MGLEKPRGGEV-------------------LLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
G+ P G V L G N+ N L L +
Sbjct: 69 AGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLN------GRLLGLSR------ 116
Query: 512 AEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLD 568
E E +ID+I LG +D V S G KARLAF ++P LL+ D
Sbjct: 117 KEIDE--KIDEIIEFSELGDF------IDLPVKTYSSGMKARLAFAIATALEPDILLI-D 167
Query: 569 EPT----NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
E + L E + + K TVI VSHD +K++ +R +
Sbjct: 168 EVLAVGDAAFQEKCQRRLRELLKQGK-TVILVSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 6e-18
Identities = 64/188 (34%), Positives = 95/188 (50%), Gaps = 27/188 (14%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495
LT +GE TAI+GP+G GKSTLL LI G E P+ G VL+ +V + F++
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78
Query: 496 NQAEA-LDLDKTV-------LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
N A L +++ V L+ AE + I+ +G + R LSGG
Sbjct: 79 NNLFAHLTVEQNVGLGLSPGLKLTAEDRQ--AIEVALARVGLAGLEK----RLPGELSGG 132
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE---EAISEYKGTVITVSHDRYFV 603
E+ R+A + +V+ +L+LDEP LD EML+ + +E K TV+ V+H
Sbjct: 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDA 192
Query: 604 KQIVNRVV 611
K++ RVV
Sbjct: 193 KRLAQRVV 200
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 6e-18
Identities = 56/196 (28%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +N+ Y ++ + NLTIE GE +IGP+G GK+T LK+I L +P GE+L+
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 485 EHNV--LPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLL 527
++ L + Q L TV E +A + R D++ L+
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV 121
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
G ++ DR LSGG++ R+ + + +L++DEP LD +++ L+E I
Sbjct: 122 GLD--PSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIK 179
Query: 588 ----EYKGTVITVSHD 599
E T++ V+HD
Sbjct: 180 ELQKELGKTIVFVTHD 195
|
Length = 309 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 7e-18
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 32/217 (14%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V KN+ F Y + +L I GE A++GP+G GKSTL+ LI G +L
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN---F 532
+ H+V L + + TV E +A ++++ N F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 533 KADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
++ D + LSGG++ R+A + ++K +L+LDE T+ LD S+ +++ A
Sbjct: 121 IMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAA 180
Query: 586 ISE-YKG-TVITVSH--------DRYFV---KQIVNR 609
+ K T ++H DR V +IV R
Sbjct: 181 LERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVER 217
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 8e-18
Identities = 53/181 (29%), Positives = 83/181 (45%), Gaps = 30/181 (16%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+ L F Y R + + T+ G A++GPNG GKSTL L+ L + G++ + H
Sbjct: 4 VAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 487 NV----------LPNYFEQNQAEALDLDKTVLETV-----------AEAAEDWRIDDIKG 525
++ L F+Q LDLD +V + + AEA RI ++
Sbjct: 64 DLRRAPRAALARLGVVFQQP---TLDLDLSVRQNLRYHAALHGLSRAEARA--RIAELLA 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
LG A+ D KV L+GG + R+ + ++ LL+LDEPT LD S+ +
Sbjct: 119 RLGL----AERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAH 174
Query: 586 I 586
+
Sbjct: 175 V 175
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 8e-18
Identities = 52/201 (25%), Positives = 93/201 (46%), Gaps = 34/201 (16%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y E + + N +I+ GE AI+GP G GK+TL+ L+M P+ G++L+
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 484 G-------EHNVLPNYFEQNQAEALDLDKTVLET------------VAEAAEDWRIDDI- 523
L + + T++E V EAA++ D
Sbjct: 63 DGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFI 122
Query: 524 ----KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
G +L LS GE+ LA + M++ +L+LDE T+++D ++
Sbjct: 123 MKLPNGY-------DTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 580 EMLEEAISE-YKG-TVITVSH 598
++++EA+ + KG T I ++H
Sbjct: 176 KLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 9e-18
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 59/253 (23%)
Query: 98 VKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+SK+Y G L+DV++ + KGE V L G +GAGK+T L++I G+E P G ++
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 157 AK---SNMK---IAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
S +K I FL Q+F + RTV E A + + GK R +
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV--ALP--LRVIGKPPREIRRR 117
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
S V +DL+G L K L +L S G
Sbjct: 118 VSEV--LDLVG--------------------LKHKARALPSQL--------------SGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL 319
Q R+++ + ++ P +LL DEPT +LD D + E + + +++ +HD +
Sbjct: 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE-INRLGTTVLMATHDLELV 200
Query: 320 DQLCTKIVETEMG 332
+++ +++ E G
Sbjct: 201 NRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 9e-18
Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 26/216 (12%)
Query: 424 VVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+V +N+ F Y D L+ + T+ GE TA++GP+G GKST++ L+ +P+GG+
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 481 VLLG-------EHNVL----------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRID 521
VLL EH L P F ++ + A L E V EAA+
Sbjct: 71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAH 130
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
L + ++ K S LSGG+K R+A + +++ +L+LDE T+ LD S++
Sbjct: 131 SFISELAS-GYDTEV-GEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQ 188
Query: 582 LEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKG 615
+++A+ ++ + TV+ ++H V++ +V G
Sbjct: 189 VQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 9e-18
Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 23/196 (11%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----YFEQNQAE 499
L+ ++GE ++GPNG GK+TLL+ I+GL P G V + + Y Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 500 ALDLDKTVLETVAEA------------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
A D +V TV D+ ++ L R ++ DR V LSGG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGL-TELADRPVGELSGG 117
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
++ R+ + + ++L+LDEP LD+P++E+L E E G ++ +HD
Sbjct: 118 QRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAM 177
Query: 605 QIVNRVVEVKGSNLQD 620
+RVV + G + D
Sbjct: 178 ATCDRVVLLNGRVIAD 193
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 1e-17
Identities = 50/182 (27%), Positives = 89/182 (48%), Gaps = 23/182 (12%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQNQAEALDL 503
+I E I+GPNG GK+T +K++ G+ KP G++ + V P Y + D
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKA------DY 74
Query: 504 DKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557
+ TV + ++ +D ++ + K L +LDR+V LSGGE R+A
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTEIAKPLQ-----IEQILDREVPELSGGELQRVAIAAC 129
Query: 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEV 613
+ K + + +LDEP+ +LD+ + M + I + + T V HD + + +R++
Sbjct: 130 LSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVF 189
Query: 614 KG 615
+G
Sbjct: 190 EG 191
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (206), Expect = 1e-17
Identities = 56/198 (28%), Positives = 100/198 (50%), Gaps = 22/198 (11%)
Query: 423 SVVTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
S++ KN+ F Y+ F + I +G+ T+I+G NG GKST+ KL++G+EK + GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 481 VLLGEHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLG 528
+ + + FE QN + + V VA E+ + D++ +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQN-PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 529 RCNFKADMLDRKVS---LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ DML+R LSGG+K R+A + ++++LDE T+ LD +++ L +
Sbjct: 125 EALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDL 184
Query: 586 ISEYKG----TVITVSHD 599
+ + K T+I+++HD
Sbjct: 185 VRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 1e-17
Identities = 60/215 (27%), Positives = 102/215 (47%), Gaps = 20/215 (9%)
Query: 422 RSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ +++ F Y D + T+ GE A++GP+G GKST+ L+ L +P G
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 479 GEVLLG-------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G+VLL +H+ L E + +V E +A D ++I N
Sbjct: 536 GQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAAN 595
Query: 532 ---FKADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
F + + K S LSGG+K R+A + +V+ +L+LDE T+ LD +++
Sbjct: 596 AHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQL 655
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616
L+E+ S TV+ ++H V++ +V KGS
Sbjct: 656 LQESRSRASRTVLLIAHRLSTVERADQILVLKKGS 690
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.1 bits (205), Expect = 1e-17
Identities = 65/195 (33%), Positives = 91/195 (46%), Gaps = 25/195 (12%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEH 486
+ L GY + + I G TAIIGPNGCGKSTLL+ + L P G V L GEH
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 487 NVLPNYFEQNQAEALDL---------DKTVLETVAEAA-------EDWRIDDIKGLLG-- 528
+ +Y + A + L D TV E VA WR +D + +
Sbjct: 71 --IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + D+ V LSGG++ R + + + +++LDEPT LDI + L E +SE
Sbjct: 129 QATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE 188
Query: 589 Y---KG-TVITVSHD 599
KG T+ V HD
Sbjct: 189 LNREKGYTLAAVLHD 203
|
Length = 265 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-17
Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 56/270 (20%)
Query: 60 AKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTW 118
+A +D S + + A+ + LEN+S Y G L D+
Sbjct: 287 GEAAADKLFTLLES----PVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNL 342
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----------NVIKAKSNMKIAFLSQ 168
+K G+ LVG +GAGK+T L ++ G P G ++ +I+++SQ
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
+ T+RE + A E + AL+ A LL+
Sbjct: 403 N-PYLFAGTIRENILLA-----RPDASDEEIIAALDQA--------GLLEFVPKPDG--- 445
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPT 287
LDT +G + G L SG Q R++L + LL LLLLDEPT
Sbjct: 446 ---LDT----------VIG---EGGAGL-----SGGQAQRLALARALLSPASLLLLDEPT 484
Query: 288 NHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
HLD +T + + L + + +++I+H
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHR 514
|
Length = 559 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 2e-17
Identities = 50/206 (24%), Positives = 91/206 (44%), Gaps = 17/206 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+ G ++GPNG GK+TL++++ L P G + +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL P + Q + + TV E + A I + +L N
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
D +K+ LSGG + R+ + +V ++L++DEPT LD + +SE
Sbjct: 120 L-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE 178
Query: 592 TVITV--SHDRYFVKQIVNRVVEVKG 615
I + +H V+ + N+V +
Sbjct: 179 DRIVILSTHIVEDVESLCNQVAVLNK 204
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 60/215 (27%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
++++N+SK+Y G LKDV E+ +GE V ++G +GAGK+T LR + G +P SG ++
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 156 ----------KAKSNM--KIAFLSQEFEVSMSRTV-------REEFMSAFKEEMEIAGKL 196
K + I + Q+F + +V R + S ++ + K
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
++ +AL++ L+ + LD + S L
Sbjct: 124 DK-AQALDA-----------LERVGI---------LDKAYQRASTL-------------- 148
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P ++L DEP LD
Sbjct: 149 ----SGGQQQRVAIARALVQQPKIILADEPVASLD 179
|
Length = 258 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-17
Identities = 50/172 (29%), Positives = 78/172 (45%), Gaps = 11/172 (6%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVLPNYF 493
R LF+ + T+ GE + GPNG GK+TLL+++ GL P G VLL +
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIA 72
Query: 494 EQ----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
A + +VLE + D + ++ L R DR V+ LS G++
Sbjct: 73 RGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNG-FEDRPVAQLSAGQQ 131
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSH 598
R+A + ++ L +LDEPT LD EA++ + G V+ +H
Sbjct: 132 RRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTH 183
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 66/213 (30%), Positives = 100/213 (46%), Gaps = 42/213 (19%)
Query: 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--------- 483
G D + +L+I +GE AI+G +G GKSTLL L+ GL+ P GEVL
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLS 73
Query: 484 -GEHNVLPN------YFEQNQAEALDLDKTVLETVA-----------EAAEDWRIDDIKG 525
E L N Y Q L D T LE VA EA E
Sbjct: 74 SNERAKLRNKKLGFIY----QFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYE 124
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EM 581
+L + + ++ + S LSGGE+ R+A + +V +L++ DEPT +LD + ++
Sbjct: 125 MLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 582 LEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ E E + + V+HD K++ +RV+E+K
Sbjct: 184 MLELNRELNTSFLVVTHDLELAKKL-DRVLEMK 215
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (209), Expect = 2e-17
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 33/210 (15%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+ ++ ++ I+NL ++ + + +LTI +GE A++G +GCGKSTLL+++ G E
Sbjct: 10 AKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69
Query: 475 KPRGGEVLLGEHNV--LPNY------------------FEQNQAEALDLDKTVLETVAEA 514
+P G+++L ++ +P Y EQN A L DK + +A
Sbjct: 70 QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK-----LPKA 124
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
R++++ GL+ F RK LSGG++ R+A + + K LL+LDEP L
Sbjct: 125 EIASRVNEMLGLVHMQEFAK----RKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGAL 180
Query: 575 DIPSKEMLEEA---ISEYKG-TVITVSHDR 600
D ++ ++ I E G T + V+HD+
Sbjct: 181 DKKLRDRMQLEVVDILERVGVTCVMVTHDQ 210
|
Length = 377 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 2e-17
Identities = 58/195 (29%), Positives = 95/195 (48%), Gaps = 29/195 (14%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496
N++I GE ++GP+G GKSTLLKLI E P G + + +V +P Y +
Sbjct: 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP-YLRRK 79
Query: 497 -----QAEALDLDKTVLETVAEAAE-------DW--RIDDIKGLLGRCNFKADMLDRKVS 542
Q L D+ V E VA A E + R+ L+G + + +
Sbjct: 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRAL----PA 135
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLE--EAISEYKGTVITVSHD 599
LSGGE+ R+A + +V T+L+ DEPT +LD + E++ + I++ TV+ +H
Sbjct: 136 ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHA 195
Query: 600 RYFVKQIVNRVVEVK 614
+ V +RV+ ++
Sbjct: 196 KELVDTTRHRVIALE 210
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 57/216 (26%), Positives = 93/216 (43%), Gaps = 28/216 (12%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L ED+ + NLT+++GE AI+GPNG GKSTL K I G G +L
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 484 GEHNVLPNYFE-----------QNQAE-----ALDLDKTVLETVAEAAEDWRID------ 521
++L + Q E L+ ++ L A + +D
Sbjct: 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK 121
Query: 522 DIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+K L + L+R V+ SGGEK R + + L +LDE + LDI + +
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALK 181
Query: 581 MLEEAISEYKG---TVITVSHDRYFVKQIVNRVVEV 613
++ E I+ + + + ++H + + I V V
Sbjct: 182 IVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHV 217
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 3e-17
Identities = 56/188 (29%), Positives = 95/188 (50%), Gaps = 13/188 (6%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+V+++N+ + R + + +L ++ G+ ++GPNG GKSTL+++++GL P G V+
Sbjct: 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VI 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDR 539
+ Y Q L LD T+ TV + +DI L R ++D
Sbjct: 62 KRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ-AGHLIDA 116
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT----VIT 595
+ LSGGE R+ + ++ LLVLDEPT +D+ + L + I + + V+
Sbjct: 117 PMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLM 176
Query: 596 VSHDRYFV 603
VSHD + V
Sbjct: 177 VSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 3e-17
Identities = 68/271 (25%), Positives = 109/271 (40%), Gaps = 54/271 (19%)
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RL 438
A R + + LE Q + + + + R + + +T++NL D +
Sbjct: 354 ATLLRLAEFRQALEAAQMDTE-----KPARTGRRI-DFDDNADHGITLENLSLRTPDGQT 407
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEHNVLP 490
L + N + GE+ I G +G GK++LL+ + GL P +L LP
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLF-----LP 462
Query: 491 N--YFEQ----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
Y Q N A D ++ + + LG + D D
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFS-DAELVAVLHKVG-----------LGDLAERLDEED 510
Query: 539 RKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-EMLEEAISEYKG-TVIT 595
R +LSGGE+ RLAF + ++ KP + LDE T+ LD ++ + + E TVI+
Sbjct: 511 RWDRVLSGGEQQRLAFARLLLHKPK-WVFLDEATSALDEETEDRLYQLLKEELPDATVIS 569
Query: 596 VSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626
V H R + +R +E L D AG N
Sbjct: 570 VGH-RPTLWNFHSRQLE-----LLDDAGGQN 594
|
Length = 604 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 4e-17
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L+N+SK Y TVL DV+ ++ GE V L+G +G+GK+T LR IAG EEPDSG++
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVRE 180
+I + Q+F + TV E
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 4e-17
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 52/200 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN++ Y +L V+ V +GE V L+G NGAGKTT L+ I G P SG++
Sbjct: 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++ I ++ + + TV E + A + + + LE
Sbjct: 62 RDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG-----AYARRRAKRKARLE--- 113
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
R+ + F L+ + +L + S G Q
Sbjct: 114 -------RVYELFPRLKERR--------------------------KQLAGTLSGGEQQM 140
Query: 268 MSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 141 LAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 4e-17
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N++K+Y G L + + GE V LVG +GAGK+T L++I +E P SG +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 157 AKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER-VQKA 202
++ KI + Q+F + R V E A +E+ G R ++K
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA----LEVTGVPPREIRKR 116
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A++ + L + L A S
Sbjct: 117 VPAALELVGLSHKH-------------------------------------RALPAELSG 139
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAF 318
G Q R+++ + ++ P +L+ DEPT +LD DT + L+ + K +V+ +H +
Sbjct: 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKEL 198
Query: 319 LDQLCTKIVETEMG 332
+D +++ E G
Sbjct: 199 VDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 4e-17
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 36/202 (17%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y+ R + + TI G+K AI+GP+G GKST+L+L+ G +L+
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 484 GEH---NVLPNYFEQN-----QAEALDLDKTVL------------ETVAEAAEDWRIDD- 522
V + + Q L + T+ E V EAA+ +I D
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVL-FNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDK 119
Query: 523 IKGLLGRCNFKADMLDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
I D D V LSGGEK R+A + ++K +L+LDE T+ LD +
Sbjct: 120 IMRF-------PDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172
Query: 579 KEMLEEAISE-YKG-TVITVSH 598
+ ++ A+ + KG T I ++H
Sbjct: 173 EREIQAALRDVSKGRTTIVIAH 194
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 61/186 (32%), Positives = 88/186 (47%), Gaps = 43/186 (23%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLP--------- 490
R +LT+ERGE+ AI+GP+G GKSTLL LI G P G + L +H P
Sbjct: 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76
Query: 491 ----NYF-----EQNQAEALD----LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
N F QN L+ L+ E + A I+ D+L
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-------------DLL 123
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEML---EEAISEYKGT 592
R LSGG++ R+A + +V+ +L+LDEP + LD P+ +EML + E + T
Sbjct: 124 ARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALD-PALRQEMLTLVSQVCQERQLT 182
Query: 593 VITVSH 598
++ VSH
Sbjct: 183 LLMVSH 188
|
Length = 232 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 5e-17
Identities = 83/319 (26%), Positives = 139/319 (43%), Gaps = 65/319 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+E +S Y +L + + G ++GL+G NGAGK+T ++++AG+ P SG + A
Sbjct: 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +K+ + +Q + EF+ +A ES + + RL
Sbjct: 373 KG-IKLGYFAQH---------QLEFL-----------------RADESPLQH---LARLA 402
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ L+ K+ + GF D FS G + R+ L I+ Q
Sbjct: 403 PQ--------------ELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQR 448
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
P+LLLLDEPTNHLDLD + L L + +V++SHDR L + G +
Sbjct: 449 PNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPF 508
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLE---R 394
+G+ Y W+ +KQ+ + ++ ANS +A +K+ E R
Sbjct: 509 DGDLEDY----QQWLSDV----QKQENQTDEAPK-----ENNANSAQARKDQKRREAELR 555
Query: 395 LQEE---EQIEKPFQRKQM 410
Q + ++I + K+M
Sbjct: 556 TQTQPLRKEIAR--LEKEM 572
|
Length = 638 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 5e-17
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 52/245 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ++KS+ G TVLK V +V++GE + ++G +G+GK+T LR+I G PDSG V
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV--- 57
Query: 158 KSNMKIAFLSQEFEVSMSRT----VREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-- 211
+ E +S +R F+ AL D +
Sbjct: 58 -------LIDGEDISGLSEAELYRLRRRMGMLFQ------------SGAL---FDSLTVF 95
Query: 212 --LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L + L + + + + L+ L+A +G + D A S G + R++
Sbjct: 96 ENVAFPLREHTRLSEEEIREIVLEKLEA--------VGLRGAE-DLYPAELSGGMKKRVA 146
Query: 270 LGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L + L DP+LLL DEPT LD D I L+ LG + ++++HD +
Sbjct: 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG---LTSIMVTHDLDTAFAI 203
Query: 323 CTKIV 327
+I
Sbjct: 204 ADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 5e-17
Identities = 60/205 (29%), Positives = 94/205 (45%), Gaps = 54/205 (26%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + + Y +R + N+ +L I G+ A++G +GCGKSTLL+L+ GLE P GE+L G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR--------------IDDIKGLLGRC 530
+AEA ED R ID++ GL +
Sbjct: 73 T-----------------------APLAEAREDTRLMFQDARLLPWKKVIDNV-GLGLKG 108
Query: 531 NFKADMLD--RKVSL----------LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD--- 575
++ L V L LSGG+K R+A + ++ LL+LDEP LD
Sbjct: 109 QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 576 -IPSKEMLEEAISEYKGTVITVSHD 599
I ++++E ++ TV+ V+HD
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 78.2 bits (194), Expect = 6e-17
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L I+K + GV L V+ V++GE L+G NGAGK+T ++I++G +PDSG +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 6e-17
Identities = 63/211 (29%), Positives = 101/211 (47%), Gaps = 29/211 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + D + + +L I GE A++GP+G GK+TLL+LI GLE+P G +L G
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVA-------------EAAEDWRIDDIKG 525
+ ++ Q AL TV + VA EA ++ ++
Sbjct: 63 GEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLK 122
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM-- 581
L+ DR + LSGG++ R+A + + V+P LL LDEP LD KE+
Sbjct: 123 LVQLDWLA----DRYPAQLSGGQRQRVALARALAVEPKVLL-LDEPFGALDAKVRKELRR 177
Query: 582 -LEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
L E T + V+HD+ ++ +RVV
Sbjct: 178 WLRRLHDELHVTTVFVTHDQEEALEVADRVV 208
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 84.4 bits (209), Expect = 6e-17
Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 36/241 (14%)
Query: 384 RASSAEKKL-ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLL 439
RA+ A ++L E LQ E I+ P K + + P RG + + + F Y D+
Sbjct: 303 RAAGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGE-----IEFEQVNFAYPARPDQPA 355
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQN 496
+ NLT+ GE A++GP+G GKSTL +L++ P+ G +LL ++ P
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRAR 415
Query: 497 QA-----------EALD------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
A ++ D T E V AA + L + + +R
Sbjct: 416 MALVPQDPVLFAASVMENIRYGRPDATD-EEVEAAARAAHAHEFISALPE-GYDTYLGER 473
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-YKG-TVITVS 597
V+ LSGG++ R+A + ++K + +L+LDE T+ LD S++++++A+ KG T + ++
Sbjct: 474 GVT-LSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIA 532
Query: 598 H 598
H
Sbjct: 533 H 533
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 6e-17
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 59/245 (24%)
Query: 65 DVESLFSSSADEFENKKYSNKQSNTGASSISS--------GVKLENISKSYKGVTVLKDV 116
+ + A ++ + + +S + L +SKSY V+ +
Sbjct: 1 LLTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGL 60
Query: 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAK-SNMKIAFLS 167
++ V GE GL+G NGAGK+T R+I G PD+G + +A+ + +I +
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120
Query: 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRK 226
Q + + TVRE + + G+ + + +E+ + L EF L+ K
Sbjct: 121 QFDNLDLEFTVRENLL--------VFGRYFGMSTREIEAVIPS-------LLEFARLESK 165
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A DA+VS L S G + R++L + L+ DP LL+LDEP
Sbjct: 166 A--------DARVSDL------------------SGGMKRRLTLARALINDPQLLILDEP 199
Query: 287 TNHLD 291
T LD
Sbjct: 200 TTGLD 204
|
Length = 340 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 6e-17
Identities = 58/219 (26%), Positives = 100/219 (45%), Gaps = 51/219 (23%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
++ S +V ++ + ++ + + + +LTI GE ++GP+GCGK+T+L+LI G E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 475 KPRGGEVLL-GE------------HNVLPNY--------FEQNQAEALDLDKT----VLE 509
P G ++L G+ + V +Y FE N A L + KT +
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE-NVAFGLRMQKTPAAEITP 123
Query: 510 TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
V EA +++ + RK LSGG++ R+A + +V +L+LDE
Sbjct: 124 RVMEALRMVQLE-------------EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170
Query: 570 PTNHLDIP-SKEMLEEAISEYKG-------TVITVSHDR 600
+ LD K+M +E K T + V+HD+
Sbjct: 171 SLSALDYKLRKQMQ----NELKALQRKLGITFVFVTHDQ 205
|
Length = 375 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 79.7 bits (197), Expect = 7e-17
Identities = 55/204 (26%), Positives = 87/204 (42%), Gaps = 33/204 (16%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL------------LGEHN 487
+LT+ GE A+ GP+G GKSTLLK + P G +L
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPRE 83
Query: 488 VLP------NYFEQNQAEALDL--DKTVLETVAEAAEDWRIDD------IKGLLGRCNFK 533
VL Y Q L + + LE VAE + + + LL R N
Sbjct: 84 VLEVRRKTIGYVSQ----FLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIP 139
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-- 591
+ + SGGE+ R+ + + +L+LDEPT LD +++++ E I+E K
Sbjct: 140 ERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
Query: 592 -TVITVSHDRYFVKQIVNRVVEVK 614
+I + HD + + +RV++V
Sbjct: 200 AALIGIFHDEEVRELVADRVMDVT 223
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 9e-17
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-----QEEPDSG 152
++L +++ Y LKD++ ++ KGE L+G +G GK+T LR++ PD G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V+ + + + + R V F I + + L
Sbjct: 61 EVLLDGKD---IYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR----------L 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA-SFSSGWQMRMSLG 271
G L E LD +V + + + + DRL A S G Q R+ L
Sbjct: 108 HGIKLKEE--------------LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +P++LLLDEPT+ LD IE L L K++ +VI++H+
Sbjct: 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAEL-KKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 9e-17
Identities = 62/226 (27%), Positives = 100/226 (44%), Gaps = 56/226 (24%)
Query: 412 IRFPERG--RSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLL 467
+ FP + + +T+ N+ F Y D+ + +L I+ GEK A++G GCGKSTLL
Sbjct: 324 VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYFEQN--------------------------QAEAL 501
+L+ P+ GE+LL + +Y E A
Sbjct: 384 QLLTRAWDPQQGEILLNGQP-IADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNAS 442
Query: 502 D------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
D L + LE + E +D ++ G GR LSGGE+ RL
Sbjct: 443 DEALIEVLQQVGLEKLLE--DDKGLNAWLGEGGR-------------QLSGGEQRRLGIA 487
Query: 556 KFMVKPSTLLVLDEPTNHLDIPS-KEMLE--EAISEYKGTVITVSH 598
+ ++ + LL+LDEPT LD + +++LE ++ K TV+ ++H
Sbjct: 488 RALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNK-TVLMITH 532
|
Length = 574 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-17
Identities = 59/196 (30%), Positives = 88/196 (44%), Gaps = 16/196 (8%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
KNL + + N +LT+ + ++GPNG GKSTLLK+I G+ +P GE++ H
Sbjct: 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
Query: 487 ----NVLPNYFEQNQAEALDLDKTVLE-----TVAEAAEDWRIDDIKGLLGRCNFKADML 537
L ++ L + T E T D RID++ ++ N
Sbjct: 63 PWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG---- 118
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
+K S G K RL ++ LL+LDEPTN LD + L E I + TVI
Sbjct: 119 KKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVI 178
Query: 595 TVSHDRYFVKQIVNRV 610
SH V+Q+ + +
Sbjct: 179 LSSHILSEVQQLADHI 194
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-16
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++EN+S Y G T L +V+ +K GE V LVG NG+GK+T LR IAG +P SG ++
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 1e-16
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++LEN+SK Y G L V+ ++K+GE L+G +G GKTT LR+IAG E P SG
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
N+ K + F Q + + TV E AF ++ K E ++ E+
Sbjct: 61 GKDITNLPPHKRPVNTVF--QNYALFPHLTVFENI--AFGLRLKKLPKAEIKERVAEA-- 114
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+ L+ + +R + S G Q R
Sbjct: 115 --LDLVQ--LEGY--------------------------------ANRKPSQLSGGQQQR 138
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+++ + L+ +P +LLLDEP LDL + +
Sbjct: 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDM 169
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 1e-16
Identities = 60/219 (27%), Positives = 99/219 (45%), Gaps = 39/219 (17%)
Query: 424 VVTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ ++N+ + + +L I +GE IIG +G GKSTLL+LI LE+P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 479 GEVLLGEHNV--LPNY----FEQN-----QAEALDLDKTVLETVAEAAEDWRID------ 521
G V + ++ L Q Q L +TV E VA E +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 522 ------DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
++ GL +D DR + LSGG+K R+A + + +L+ DE T+ LD
Sbjct: 121 RVAELLELVGL-------SDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 576 IPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+ E+L++ E T++ ++H+ VK+I +RV
Sbjct: 174 PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 1e-16
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 57/252 (22%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N+SK+Y GV L DV+ ++KGE + L G +GAGKTT L+++ G P G V
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 157 AKSNM------KIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
A ++ ++ L Q+F + RTV E A +E+ GK ER +
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV--ALP--LEVRGKKER---EI 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ V G L + L + PE S G
Sbjct: 115 QRRV------GAALRQVGLEHKA--------------DAFPE-------------QLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320
Q R+++ + ++ P LLL DEPT +LD D E + L K+ +++ +HD + +D
Sbjct: 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
Query: 321 QLCTKIVETEMG 332
++ +++ + G
Sbjct: 202 RVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 1e-16
Identities = 114/570 (20%), Positives = 228/570 (40%), Gaps = 130/570 (22%)
Query: 99 KLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKT----TQLRIIAGQEEPD 150
+ N+S ++ V +K ++++++ GE + LVG +G+GK+ + L ++ P
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----PS 62
Query: 151 SGNVIKAKSNMKIAFLSQEFEVSMSRT---VREEFMSA-FKEEMEIAGKLERVQKALESA 206
+ S I F ++ + R VR + F+E M L + K L
Sbjct: 63 PAAAHPSGS---ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF----SS 262
+ R + ++ A+ +L+ +G + ++ + ++ S
Sbjct: 120 L-----------------RLHRGLSRAAARARALELLELVGI--PEPEKRLDAYPHELSG 160
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
G + R+ + L +PDLL+ DEPT LD LD ++ L+ LG + ++ I+HD
Sbjct: 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG---MAILFITHD 217
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR 375
+ + ++ YV++ +E+ + T+ L+
Sbjct: 218 LGIVRKFADRV-----------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG----RSGRSVVTIKNLE 431
+G A LE + +++ FP +G R+ + + +
Sbjct: 261 EPSGDPPPLPEDAPVLLEV-------------EDLRVWFPIKGGFLRRTVDHLRAVDGI- 306
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----GEVLLG-- 484
+LT+ RG+ ++G +G GKSTL ++ L +G G+ + G
Sbjct: 307 ------------SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLS 354
Query: 485 EHNVLPNYFE-----QNQAEALDLDKTVLETVAE----------AAEDWRIDDIKGLLGR 529
+ P Q+ +L TV + + E AAE R + L
Sbjct: 355 RKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAE--RDQRVIEALEE 412
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK----EMLEE 584
+R SGG++ R+A + ++ KP L++LDEPT+ LD + ++L +
Sbjct: 413 VGLDPATRNRYPHEFSGGQRQRIAIARALILKPE-LILLDEPTSALDRSVQAQVLDLLRD 471
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
++ + + +SHD V+ + +RV+ ++
Sbjct: 472 LQQKHGLSYLFISHDLAVVRALCHRVIVMR 501
|
Length = 534 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 40/228 (17%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---KSNMKI 163
Y+ V LK +++ ++KGE VG +G NGAGKTT L+I++G +P SG V A +
Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRK 90
Query: 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223
FL + V +T ++ L +D L+ + +DL
Sbjct: 91 KFLRRIGVVFGQKT-------------QLWWDL--------PVIDSFYLLAAI---YDLP 126
Query: 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283
+ + LD L +++ L L D V S G +MR + LL +P++L L
Sbjct: 127 PARFKK-RLDEL-SELLDLEELL-------DTPVRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 284 DEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DEPT LD+ E +L+ Y ++ +++ SH ++ L +++
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 63/250 (25%), Positives = 106/250 (42%), Gaps = 61/250 (24%)
Query: 397 EEEQIEKPFQRKQMKIRFPERGRSG-----RSVVTIKNLEFGYEDRLLFNRANLTIERGE 451
E + K ++ + +S R V +K + + TIE+GE
Sbjct: 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGI-------------SFTIEKGE 48
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEHNVLPNYFEQN------------QA 498
IGPNG GK+T LK++ GL +P GEV + G +P +++ Q
Sbjct: 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL---VP--WKRRKKFLRRIGVVFGQK 103
Query: 499 EALDLDKTVLETVAEAAEDWRIDD--IKGLLGRCNFKADMLD---------RKVSLLSGG 547
L D V+++ A + + K L +++LD R++SL G
Sbjct: 104 TQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDEL---SELLDLEELLDTPVRQLSL---G 157
Query: 548 E--KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSHDRY 601
+ +A +A + +P +L LDEPT LD+ ++E L+E E TV+ SH
Sbjct: 158 QRMRAEIA-AALLHEPE-ILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK 215
Query: 602 FVKQIVNRVV 611
++ + RV+
Sbjct: 216 DIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.8 bits (197), Expect = 1e-16
Identities = 65/222 (29%), Positives = 100/222 (45%), Gaps = 37/222 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++N+ F R L + +LT G+ T +IG NG GKSTLLK++ + P GE+LL
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 486 HNVLP----------NYFEQN--QAEALDLDKTVLETVAEAAEDW-------------RI 520
+ Y Q AE + TV E VA W ++
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGM----TVRELVAIGRYPWHGALGRFGAADREKV 128
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK- 579
++ L+G R V LSGGE+ R + + S L+LDEPT+ LDI +
Sbjct: 129 EEAISLVGLKPLA----HRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQV 184
Query: 580 EMLE--EAISEYKG-TVITVSHDRYFVKQIVNRVVEVKGSNL 618
++L +S+ +G TVI V HD + + +V ++G +
Sbjct: 185 DVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEM 226
|
Length = 265 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 83.4 bits (206), Expect = 2e-16
Identities = 88/366 (24%), Positives = 142/366 (38%), Gaps = 93/366 (25%)
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI----------------KNLEFGY 434
K+ER + +E+ ++ Q Q + E ++G V + +N
Sbjct: 129 KIERRKRKEERQREVQY-QAHVAEMEAAKAGMPGVYVNHDGNGGGPAIKDIHMENFSISV 187
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-----LIMGLEKPRGGEVLLGEHNV- 488
R L A++T+ G ++G NG GK+T L+ I G+ P+ ++L E V
Sbjct: 188 GGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGI--PKNCQILHVEQEVV 245
Query: 489 ----------LPNYFEQNQ---AEA-LDLDKTVLETVAEAAED--------------WRI 520
L E+ Q EA L + LE E + R+
Sbjct: 246 GDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRL 305
Query: 521 DDI----------------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
++I +L +F +M + SGG + R+A + + L
Sbjct: 306 EEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDL 365
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624
L+LDEPTNHLD+ + LE + ++ T I VSH R F+ +V ++ + G L Y GD
Sbjct: 366 LLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGD 425
Query: 625 YNYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKEARKKQKMQAFQAAKQKSKG 684
Y+ + ER + + K++ E R + MQAF K
Sbjct: 426 YDTF-------------------ERTREEQLKNQQKAFESNERSRSHMQAF-----IDKF 461
Query: 685 SKNAKR 690
NAKR
Sbjct: 462 RYNAKR 467
|
Length = 718 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.7 bits (195), Expect = 2e-16
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 55/202 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN+S Y + L+ V+ EV++GE V L+G NGAGKTT L+ I G P SG +I
Sbjct: 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+A+ + IA++ + + TV E + R ++A E
Sbjct: 65 EDITGLPPHERAR--LGIAYVPEGRRIFPRLTVEENL--------LLGAYARRDKEAQER 114
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
++++ ++L P L + ++ + S G Q
Sbjct: 115 DLEEV---------YELF--------------------PRL---KERRNQRAGTLSGGEQ 142
Query: 266 MRMSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 143 QMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 2e-16
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 55/205 (26%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EK 475
+ ++NL D R+L + I+ G++ I GP+G GKS+L + + GL
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 476 PRGGEVLLGEHNVLPN--YFEQ-NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF 532
P G ++L LP Y E L W DD+
Sbjct: 61 PEGEDLLF-----LPQRPYLPLGTLREQL-------------IYPW--DDV--------- 91
Query: 533 KADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
LSGGE+ RLAF + + KP + LDE T+ LD S++ L + + E
Sbjct: 92 -----------LSGGEQQRLAFARLLLHKP-KFVFLDEATSALDEESEDRLYQLLKELGI 139
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGS 616
TVI+V H R + + +RV+++ G
Sbjct: 140 TVISVGH-RPSLWKFHDRVLDLDGE 163
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (205), Expect = 2e-16
Identities = 65/216 (30%), Positives = 101/216 (46%), Gaps = 24/216 (11%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ R P ++V +L D L I GE I+GPNG GK+T KL+
Sbjct: 327 EERPPRDESERETLVEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNGIGKTTFAKLL 385
Query: 471 MGLEKPRGGEVLLGEH-NVLPNYFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIK 524
G+ KP GEV + P Y + + D TV + + +D ++ + IK
Sbjct: 386 AGVLKPDEGEVDPELKISYKPQYIKPDY------DGTVEDLLRSITDDLGSSYYKSEIIK 439
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
L L R +LD+ V LSGGE R+A + + + L +LDEP+ HLD+ + +
Sbjct: 440 PLQLER------LLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA 493
Query: 584 EAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+AI E + T + V HD Y + I +R++ +G
Sbjct: 494 KAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 2e-16
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 27/196 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
VT++N+ Y D ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 485 EHNVLPNYFEQN--------QAEALDLDKTVLETV--------AEAAE-DWRIDDIKGLL 527
E + N Q+ AL +V E + A+ E + R++ + +L
Sbjct: 64 EKRM--NDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL 121
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + + IS
Sbjct: 122 QL----AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEIS 177
Query: 588 ----EYKGTVITVSHD 599
T+I V+HD
Sbjct: 178 RLHKRLGRTMIYVTHD 193
|
Length = 369 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 3e-16
Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 79/328 (24%)
Query: 15 FSTLQPRFT-PFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVESLFSSS 73
F+ L F P K R+ + +
Sbjct: 415 FNMLAGYFISPITRLSQLWTDFQQAKVALERL---------------------GDILDTP 453
Query: 74 ADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGV 131
++ +K + + ++ EN+S Y VL+D++ E+ GEKV +VG
Sbjct: 454 PEQEGDKTLIHL------PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREE 181
+G+GK+T L+++ G +P G ++ ++ + ++ Q+ S ++R E
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD-PFLFSGSIR-E 565
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241
++ E E + +A + A EF + + DT
Sbjct: 566 NIALGNPEA----TDEEIIEAAQLAG---------AHEF----IENLPMGYDT------- 601
Query: 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301
+G A+ S G + R++L + LL P +LLLDE T+ LD +T +
Sbjct: 602 ---PVGEGG-------ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 302 LGK--QDVPMVIISHDRAFLDQLCTKIV 327
L + Q ++II+H + + + +I+
Sbjct: 652 LLQILQGRTVIIIAHRLSTI-RSADRII 678
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 82.0 bits (203), Expect = 3e-16
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 62/252 (24%)
Query: 95 SSGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++ +S +Y G L+ V++ V GE+V LVG +GAGK+T L ++ G +P G+
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 154 V---------IKAKSNMK-IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
+ A S IA++ Q F ++ E ++
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI---------------------AENIR 417
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVAS 259
A A D ++ + LD A + + L +G + G L
Sbjct: 418 LARPDASDAE------------IREALERAGLDEFVAALPQGLDTPIG---EGGAGL--- 459
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G R++L + L+D LLLLDEPT HLD +T +E L + V ++++H
Sbjct: 460 -SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV--LLVTHR 516
Query: 316 RAFLDQLCTKIV 327
A L +IV
Sbjct: 517 LALA-ALADRIV 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 3e-16
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 56/262 (21%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L N+S +Y G LK+ + +GEKV ++G +G+GK+T L+++AG +P G++
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ I+ L+Q + S T+R+ A + + E + AL+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASD-----EELWAALQQ 450
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L L D L+ + + G RL S G +
Sbjct: 451 V----GLEKLLESA------------PDGLNTWLG----------EGGRRL----SGGER 480
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + LL D L LLDEPT LD + L + + +++++H L++
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER 538
Query: 322 LCTKIVETEMGVSRTYEGNYSQ 343
+I+ + G EG +++
Sbjct: 539 -MDRIIVLDNG-KIIEEGTHAE 558
|
Length = 573 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 78.2 bits (193), Expect = 3e-16
Identities = 58/196 (29%), Positives = 91/196 (46%), Gaps = 29/196 (14%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++N+ + D + N + ++ GE I GP+GCGKSTLLK++ L P G +L
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 487 NVL---PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRI-------DDIKGLLGRCN 531
++ P + Q Q L D TV + + W+I L R
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---WQIRNQQPDPAIFLDDLERFA 125
Query: 532 FKADMLDRKVSLLSGGEKARLAFCK---FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+L + ++ LSGGEK R++ + FM K +L+LDE T+ LD +K + E I
Sbjct: 126 LPDTILTKNIAELSGGEKQRISLIRNLQFMPK---VLLLDEITSALDESNKHNVNEIIHR 182
Query: 589 Y----KGTVITVSHDR 600
Y V+ V+HD+
Sbjct: 183 YVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 4e-16
Identities = 48/187 (25%), Positives = 89/187 (47%), Gaps = 25/187 (13%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------- 497
T++ GE T ++GPNG GK+T L+++ GL +P G + +V+ E +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 498 AEALDLDKTVLETVA----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ L T E + + R++++ LG ++LDR+V S G
Sbjct: 86 STGLYDRLTARENLEYFAGLYGLKGDELTA-RLEELADRLG----MEELLDRRVGGFSTG 140
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
+ ++A + +V +L+LDEPT LD+ + L E I + + ++ +H V+
Sbjct: 141 MRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200
Query: 605 QIVNRVV 611
++ +RVV
Sbjct: 201 RLCDRVV 207
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-16
Identities = 69/249 (27%), Positives = 100/249 (40%), Gaps = 36/249 (14%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+ E+ S + +K L G + + I +GE+ IIG NG GKSTLLKL
Sbjct: 15 IYHEKSYSLKK--RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKL 72
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV---------AEAAEDWRI 520
I G+ KP G+V + E D + T E + D ++
Sbjct: 73 IAGIYKPTSGKVKVTGKVAPL--IELGA--GFDPELTGRENIYLRGLILGLTRKEIDEKV 128
Query: 521 DDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIP 577
D+I LG D +D+ V S G ARLAF V+P LL LDE D
Sbjct: 129 DEIIEFAELG------DFIDQPVKTYSSGMYARLAFSVATHVEPDILL-LDEVLAVGDAA 181
Query: 578 SKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD----YNYYLE 630
+E E ++E T++ VSHD +KQ +R + ++ ++ G Y E
Sbjct: 182 FQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRME-GSPEEVIPAYEE 240
Query: 631 KNLDAREKE 639
D
Sbjct: 241 DLADRLSLN 249
|
Length = 249 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 4e-16
Identities = 59/259 (22%), Positives = 115/259 (44%), Gaps = 69/259 (26%)
Query: 92 SSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
+ ++ N+S +Y G L +V+ ++ GEKV ++G G+GK+T L+++ G +P
Sbjct: 458 PRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517
Query: 150 DSGNVIKAKSNMK----------IAFLSQE---FEVSMSRTVRE--EFMSAFKEEMEIAG 194
G+V+ +++ I ++ Q+ F T+R+ + + ++
Sbjct: 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF----YGTLRDNIALGAPYADD----- 568
Query: 195 KLERVQKALESA-VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
E + +A E A V + + R D D+ + G
Sbjct: 569 --EEILRAAELAGVT--EFVRRHPDGLDMQ-------------------------IGERG 599
Query: 254 DRLVASFSSGWQMRM-SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
L SG Q + +L + LL+DP +LLLDEPT+ +D + + L+ +L +
Sbjct: 600 RSL-----SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT-- 652
Query: 309 MVIISHDRAFLDQLCTKIV 327
+V+++H + LD L +I+
Sbjct: 653 LVLVTHRTSLLD-LVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 4e-16
Identities = 58/177 (32%), Positives = 91/177 (51%), Gaps = 28/177 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN----------VLPNY- 492
NLTI++GE ++IG +GCGKSTLL LI GL +P G V+L V NY
Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYS 64
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546
+N A A+D VL ++++ +++ L+G + D++ LSG
Sbjct: 65 LLPWLTVRENIALAVD---RVLPDLSKSERRAIVEEHIALVGL----TEAADKRPGQLSG 117
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
G K R+A + + +L+LDEP LD ++ L+E + E++ TV+ V+HD
Sbjct: 118 GMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 78.4 bits (194), Expect = 4e-16
Identities = 62/211 (29%), Positives = 95/211 (45%), Gaps = 47/211 (22%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ +++L Y D+ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 479 GEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAE--D 517
GEVLL N+ PN F ++ + VA
Sbjct: 67 GEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPF----------PMSIYDNVAYGLRLHG 116
Query: 518 WRIDDIKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDE 569
+ ++ ++ KA D L + LSGG++ RL + + VKP LL +DE
Sbjct: 117 IKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLL-MDE 175
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
PT+ LD S +EE I+E K T++ V+H
Sbjct: 176 PTSALDPISTLKIEELITELKKKYTIVIVTH 206
|
Length = 253 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 5e-16
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+ +N+SK + T + +++ V K GL+G NGAGK+T L++I G P SG
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG------ 55
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+I F + + + E + L +A +++
Sbjct: 56 ---EIIFDGHPWTRKDLHKI-----GSLIESPPLYENL--------TARENL-------- 91
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K L D+++ +++ + T + G + FS G + R+ + LL P
Sbjct: 92 -------KVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHP 143
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
LL+LDEPTN LD I+ L + +Q + +++ SH + + QL I GV
Sbjct: 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
Query: 336 TYEGNYSQ 343
Y+G ++
Sbjct: 204 -YQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 81.6 bits (202), Expect = 5e-16
Identities = 53/181 (29%), Positives = 88/181 (48%), Gaps = 23/181 (12%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505
I GE I+GPNG GK+T +KL+ G+ KP G + + P Y D D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP------DYDG 416
Query: 506 TVLETVAEAAED------WRIDDIKGL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558
TV + + A ++ + +K L L D+L+R V LSGGE R+A +
Sbjct: 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLE------DLLERPVDELSGGELQRVAIAAAL 470
Query: 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVK 614
+ + L +LDEP+ +LD+ + ++ + I + T + V HD Y + + +R++ +
Sbjct: 471 SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530
Query: 615 G 615
G
Sbjct: 531 G 531
|
Length = 591 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 6e-16
Identities = 68/226 (30%), Positives = 100/226 (44%), Gaps = 52/226 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ I+NL Y ++ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
G+VL ++ PN F N A L DK L+ +
Sbjct: 61 GKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEI 120
Query: 512 AEA----AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W D++K D L LSGG++ RL + + V+P LL
Sbjct: 121 VEESLKKAALW--DEVK----------DRLHDSALGLSGGQQQRLCIARALAVEPEVLL- 167
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRV 610
LDEPT+ LD + +EE I E K T++ V+H+ +I +R
Sbjct: 168 LDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRT 213
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.6 bits (200), Expect = 7e-16
Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 27/195 (13%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFE----- 494
+ +LT+ GE A++G NG GKSTL+K++ G+ P GE+L+ G+ + +
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84
Query: 495 -----QNQAEALDLDKTVLETVA---EAAEDWRIDDIKG-------LLGRCNFKADMLDR 539
Q + +L +V E + E + + D K LL R D D
Sbjct: 85 IATVHQELSLVPNL--SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDT 141
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITV 596
V LS ++ + + + + +L+LDEPT L + E L + I K +I +
Sbjct: 142 LVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYI 201
Query: 597 SHDRYFVKQIVNRVV 611
SH V +I +R+
Sbjct: 202 SHRLDEVFEIADRIT 216
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 1e-15
Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 30/193 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L++++GE A++G NG GKSTL+K++ GL +P GE+ + V + +A+ L
Sbjct: 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK----SPRDAIRL 79
Query: 504 ------------DK-TVLETVA---EAAEDWRID------DIKGLLGRCNFKADMLDRKV 541
TV E + E ++ ID IK L R D D KV
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKV 138
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTVITVSH 598
+ LS GE+ R+ K + + + LL+LDEPT L + L E + T+I ++H
Sbjct: 139 ADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITH 198
Query: 599 DRYFVKQIVNRVV 611
V I +RV
Sbjct: 199 KLKEVMAIADRVT 211
|
Length = 501 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-15
Identities = 62/216 (28%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + D A +L++ +GE IIG +G GKSTL++ I GLE+P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 480 EVLL-GEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEAAEDW---------R 519
VL+ G L + E +A L +TV E VA E R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
+ ++ L+G D D + LSGG+K R+ + + +L+ DE T+ LD P
Sbjct: 121 VLELLELVGL----EDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALD-PET 175
Query: 580 -----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+L + E T++ ++H+ VK+I +RV
Sbjct: 176 TQSILALLRDINRELGLTIVLITHEMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 1e-15
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 51/229 (22%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL Y + + +L+I GE A+IGP+G GKSTLL+ + GL +P G VL+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 485 EHNV--LPNYFEQN---------QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF- 532
++ L + Q L +VLE V + G LGR +
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENV-----------LSGRLGRRSTW 110
Query: 533 --------------------KADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ +LD ++ LSGG++ R+A + +++ L++ DE
Sbjct: 111 RSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 570 PTNHLD-IPSKEMLE--EAISEYKG-TVITVSHDRYFVKQIVNRVVEVK 614
P LD S+++++ + I+ +G TVI H ++ +R+V +K
Sbjct: 171 PVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLK 219
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 1e-15
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 55/206 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ N+ K Y V+ +++ V++GE GL+G NGAGKTT LR++ G PD+G++
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREE---FMSAFKEEMEIAGKLERVQKALES 205
+ ++ + Q + TVRE F F + A V L
Sbjct: 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG--LSAAAARALVPPLL-- 123
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
EF L+ KA DAKV +L S G +
Sbjct: 124 -------------EFAKLENKA--------DAKVGEL------------------SGGMK 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L+ DPD+L+LDEPT LD
Sbjct: 145 RRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 76.0 bits (188), Expect = 1e-15
Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 26/165 (15%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ NL Y + +L + +GE T ++G NG GK+TLLK +MGL + G + L
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 486 HNV--LP---------NYFEQNQAEALDLDKTV---LETVAEA---AEDWRIDDIKGLLG 528
++ LP Y Q + L TV L T A D+I L
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRL--TVEENLLTGLAALPRRSRKIPDEIYEL-- 117
Query: 529 RCNFKA--DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
F +ML R+ LSGG++ +LA + +V LL+LDEPT
Sbjct: 118 ---FPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 49/243 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
LE +S S+ G L D++ V GE ++G NGAGKTT + +I G+ PD G+V
Sbjct: 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ +IA Q+ V + TV E +E+A ++ A
Sbjct: 64 TDLTGLPEHQIARAGIGRKFQKPTVFENLTVF--------ENLELALPRDKSVFAS---- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L RL + ++ +++ +G AD+ DRL S G +
Sbjct: 112 ----LFFRL--------SAEEK-------DRIEEVLETIGL-ADEADRLAGLLSHGQKQW 151
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ +G +L+QDP LLLLDEP + + T E L+ GK V V++ HD F+ +
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSV--VVVEHDMEFVRSIA 209
Query: 324 TKI 326
K+
Sbjct: 210 DKV 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSNMKIAFLSQE 169
+LK V VK+GE ++G NG+GK+T I G E G ++ ++
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL------- 71
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
E+S R AF+ +EI G L +A++ +R A+
Sbjct: 72 -ELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNA--------------RRGARG 114
Query: 230 VNLDTLDAKVSKLMPELGFTADDGDRLV-ASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+ + + ++ + LG + +R V FS G + R + ++LL +P L +LDEP +
Sbjct: 115 ILPEFIK-ELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 289 HLDLDTIEWL-EG--YLGKQDVPMVIISHDRAFLDQL 322
LD+D ++ + EG L ++ ++II+H + LD +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210
|
Length = 251 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.4 bits (191), Expect = 2e-15
Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN--YFEQN----- 496
+ I +GE +G NG GKST LK++ GL P G+V + + + ++
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVM 103
Query: 497 -QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL------LSGGEK 549
Q L D L+++ + I D R +F ++LD + L LS G++
Sbjct: 104 GQKLQLWWDLPALDSLEVLKLIYEIPD-DEFAERLDFLTEILDLEGFLKWPVRKLSLGQR 162
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQ 605
R ++ P +L LDEPT LD+ ++ + E + EY + TV+ +H +
Sbjct: 163 MRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIAT 222
Query: 606 IVNRVV 611
+ +RV+
Sbjct: 223 LCDRVL 228
|
Length = 325 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 52/254 (20%)
Query: 101 ENISKSYKGV---------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+S Y TVL +V+ +K GE V L+G +G GK+T R++ G E P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
GNV ++ + +++ R + AF+ ++++ Q ++ SAV+
Sbjct: 67 GNV---------SWRGE----PLAKLNRAQ-RKAFRRDIQMV-----FQDSI-SAVNPRK 106
Query: 212 LMGRLLDE----FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ ++ E L + + A+ S+++ + D+ S G R
Sbjct: 107 TVREIIREPLRHLLSLDKAERL-------ARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ L + L +P LL+LDE ++LDL I L+ + + I+HD +++ C
Sbjct: 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC 219
Query: 324 T--------KIVET 329
+IVET
Sbjct: 220 QRVMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 3e-15
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 60/231 (25%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++S V LEN+S S+ VL DV+ E+K G+ + L+G NGAGK+T +R++ G PD G
Sbjct: 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG- 59
Query: 154 VIKAKSNMKIAFLSQE--FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
VIK ++I ++ Q+ + ++ TV F+ L D
Sbjct: 60 VIKRNGKLRIGYVPQKLYLDTTLPLTV-NRFLR------------------LRPGTKKED 100
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
++ L ++ QA +L +DA + KL S G R+ L
Sbjct: 101 ILPAL--------KRVQAGHL--IDAPMQKL------------------SGGETQRVLLA 132
Query: 272 KILLQDPDLLLLDEPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHD 315
+ LL P LL+LDEPT +D+ D I+ L L ++++SHD
Sbjct: 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD---CAVLMVSHD 180
|
Length = 251 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 3e-15
Identities = 57/212 (26%), Positives = 87/212 (41%), Gaps = 27/212 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ + + Y L GE ++GP+G GKS+LL+++ LE PR G + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 484 GEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWRIDDI 523
G H L + TV E + EA ++D +
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEML 582
+ LL R DR LSGG++ R+A + M++P LL DEPT LD +
Sbjct: 123 EKLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTAALDPEITAQI 180
Query: 583 EEAISEYKGTVIT---VSHDRYFVKQIVNRVV 611
I E T IT V+H+ ++ +RVV
Sbjct: 181 VSIIKELAETGITQVIVTHEVEVARKTASRVV 212
|
Length = 242 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 74.1 bits (183), Expect = 4e-15
Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 34/159 (21%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVL 482
VT+K+ +LL + + GE TAI+GP+G GKSTLL + G G GEVL
Sbjct: 11 VTVKSSPSKSGKQLL-KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69
Query: 483 LGEHNVLPNYFEQ-----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
+ + F + Q + L TV ET+ AA+ ++G
Sbjct: 70 INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK------LRG------------ 111
Query: 538 DRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
LSGGE+ R++ + + PS LL LDEPT+ LD
Sbjct: 112 ------LSGGERKRVSIALELVSNPS-LLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 4e-15
Identities = 54/226 (23%), Positives = 94/226 (41%), Gaps = 41/226 (18%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-- 477
++ +KNL + +A + +++GE I+G +G GKS L K IMGL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 478 ---GGEVLLGEHNVLP--------------NYFEQNQAEALDLDKTVLETVAEA------ 514
GGE+L ++L Q+ +L+ T+ + +AE
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGK 120
Query: 515 --AEDWRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLD 568
++ + LL +R++ LSGG + R+ + LL+ D
Sbjct: 121 GLSKKEAKERAIELLELVGIPDP--ERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178
Query: 569 EPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
EPT LD+ + ++L+E E +I ++HD V +I +RV
Sbjct: 179 EPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 4e-15
Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 28/203 (13%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-- 478
+ I +L Y + + +L IE GE A+IG +GCGK+TLL+ I G K G
Sbjct: 2 ACGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 479 GEVLLGEHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDD 522
G + + + ++ P + ++ Q AL V + VA +A R+ D
Sbjct: 62 GRIAIADRDLTHAPPH-KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVAD 120
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
L+G + A + LSGG + R+A + + +L+LDEP + LD + +
Sbjct: 121 ALKLVGLGDAAA----HLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176
Query: 583 EEAISEYKG-----TVITVSHDR 600
E I+ T++ V+HD+
Sbjct: 177 REEIAALHEELPELTILCVTHDQ 199
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 5e-15
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 51/211 (24%)
Query: 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++S Y G VL V+ ++ GE+V ++G +G+GK+T L +AG +P G V
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKAL 203
+ + +++ +Q+ + TVRE A + + E+ LERV A
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHL-FDTTVRENLRLARPDATDEELWAALERVGLA- 451
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + L D LDT+ + E G A S G
Sbjct: 452 -------DWLRALPD------------GLDTV-------LGEGG----------ARLSGG 475
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ R++L + LL D +LLLDEPT HLD +T
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 5e-15
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 67/243 (27%)
Query: 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAKSN 160
L D T ++ E G+ G +GAGK+T LR IAG E+PD G ++ + K N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 161 M-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ KI + Q++ + VRE F K E V + L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED---RISVDELL---------- 116
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ LD L +R A S G + R++L +
Sbjct: 117 --------------DLLGLDHL-----------------LNRYPAQLSGGEKQRVALARA 145
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ----DVPMVIISHDRAFLDQLCTKIVET 329
L P+LLLLDEP + LD L L + ++P++ ++HD + + L +IV
Sbjct: 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205
Query: 330 EMG 332
E G
Sbjct: 206 EDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 5e-15
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 37/204 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
N++ S + + +++ + GE + + G NG GKTT LRI+AG PDSG
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG------- 55
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
EV + T E + G L ++ L SA++++ +
Sbjct: 56 -----------EVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL-SALENLHFWAAIHGG 103
Query: 220 FDLLQRKA-QAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
A AV L GF D A S+G Q R++L ++ L
Sbjct: 104 AQRTIEDALAAVGLT-------------GFE----DLPAAQLSAGQQRRLALARLWLSRA 146
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL 302
L +LDEPT LD + L G L
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLL 170
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.0 bits (185), Expect = 5e-15
Identities = 65/254 (25%), Positives = 99/254 (38%), Gaps = 62/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++EN+SK Y G LK++ + GE V ++G +GAGK+T LR I EP SG+++
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 157 A-------------KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME-IAGKL-----E 197
K +I + Q + + TV E + L E
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
++AL L+ L + Q D L
Sbjct: 122 DKERALS-----------ALERVGLADKAYQRA--DQL---------------------- 146
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIIS- 313
S G Q R+++ + L Q PDL+L DEP LD T + + YL K+D VII+
Sbjct: 147 ---SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203
Query: 314 HDRAFLDQLCTKIV 327
H + +IV
Sbjct: 204 HQVDLAKKYADRIV 217
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (185), Expect = 6e-15
Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 56/208 (26%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KA 157
N+S G T+L DV+ ++ GE V ++G NGAGK+T LR ++G+ PDSG V +
Sbjct: 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP 65
Query: 158 KSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ A L Q +S TV E+
Sbjct: 66 LADWSPAELARRRAVLPQHSSLSFPFTVE-----------EVVA---------------- 98
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
MGR +A+ L V+ + ++ R S G Q R+ L
Sbjct: 99 --MGRA----PHGLSRAEDDAL------VAAALAQVDLAH-LAGRDYPQLSGGEQQRVQL 145
Query: 271 GKILLQ------DPDLLLLDEPTNHLDL 292
++L Q P LLLDEPT+ LDL
Sbjct: 146 ARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 6e-15
Identities = 59/216 (27%), Positives = 95/216 (43%), Gaps = 39/216 (18%)
Query: 427 IKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ + Y + LF+ L +GE ++GP+G GKS+LL+++ LE PR G +
Sbjct: 5 LNGINCFYGAHQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL---- 59
Query: 486 HNVLPNYF----EQNQAEALDLDK---------------TVLETVAEA-------AEDWR 519
N+ N+F + +L + TV + + EA ++D
Sbjct: 60 -NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQA 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPS 578
+ + LL R DR LSGG++ R+A + M++P LL DEPT LD
Sbjct: 119 LARAEKLLERLRL-KPYADRFPLHLSGGQQQRVAIARALMMEPQVLL-FDEPTAALDPEI 176
Query: 579 KEMLEEAISEYKGTVIT---VSHDRYFVKQIVNRVV 611
+ I E T IT V+H+ ++ +RVV
Sbjct: 177 TAQIVSIIRELAETGITQVIVTHEVEVARKTASRVV 212
|
Length = 242 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.7 bits (186), Expect = 6e-15
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 51/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ L +SKSY V+ D+++ + +GE GL+G NGAGK+T R++ G PD G +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 156 ------KAK-SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAV 207
+A+ + + I + Q + TVRE + + G+ + + +E+ +
Sbjct: 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL--------VFGRYFGMSTREIEAVI 116
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L EF L+ KA D VA S G + R
Sbjct: 117 PS-------LLEFARLESKA--------------------------DVRVALLSGGMKRR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
++L + L+ DP LL+LDEPT LD
Sbjct: 144 LTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 7e-15
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 103 ISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK 162
+ + + ++D+++E+ KGE VG +G NGAGK+T L+++ G P SG V + N K
Sbjct: 30 FHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV---RVNGK 86
Query: 163 IAFLSQEFEVSMSRTV-----REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F +E + V + + + +E+ + + + +D + +L
Sbjct: 87 DPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAE--RLDFLTEIL 144
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
D L+ + + +L S G +MR L LL
Sbjct: 145 D----------------LEGFLKWPVRKL--------------SLGQRMRAELAAALLHP 174
Query: 278 PDLLLLDEPTNHLDLDTI------EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +L LDEPT + LD E+L+ Y ++ +++ +H + LC +++
Sbjct: 175 PKVLFLDEPT--VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228
|
Length = 325 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 7e-15
Identities = 64/218 (29%), Positives = 93/218 (42%), Gaps = 30/218 (13%)
Query: 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L + Y + N N R + A+IGPNG GKSTL + G+ KP G VL
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 483 L-GEHNVLPNYFE---------QNQAEALDLDKTVLETVA---------EAAEDWRIDDI 523
+ GE N E QN + + TV + +A E R+
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE--- 580
+LG ++ DR LSGGEK R+A + +LVLDEPT LD +
Sbjct: 122 LHMLGL----EELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177
Query: 581 -MLEEAISEYKGTVITVSHDRYFVKQIVNRV-VEVKGS 616
L + Y TVI +H V ++ + + V KG
Sbjct: 178 DFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGR 215
|
Length = 277 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 7e-15
Identities = 59/200 (29%), Positives = 92/200 (46%), Gaps = 37/200 (18%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEHNVLPNYFEQNQAEAL 501
A+ T+ TAI G +G GK+TL++LI GL +P GE++L G F+ + L
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGR-----TLFDSRKGIFL 70
Query: 502 DLDKTVLETVAEAA---------------------EDWRI--DDIKGLLGRCNFKADMLD 538
+K + V + A + RI + + LLG +L
Sbjct: 71 PPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLG----IGHLLG 126
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVI 594
R LSGGEK R+A + ++ LL++DEP LD P K LE +E+ ++
Sbjct: 127 RLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPIL 186
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
VSH V ++ +RVV ++
Sbjct: 187 YVSHSLQEVLRLADRVVVLE 206
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 7e-15
Identities = 54/199 (27%), Positives = 90/199 (45%), Gaps = 29/199 (14%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGE 480
++ +KN+ L N TI +GE ++GP+GCGKSTLL ++G + GE
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 481 VLLGEH--NVLPNYFEQNQAEALDLDK------TVLETVAEAAEDWRIDDIKGLLGRCNF 532
+ L E ++LP Q Q L D +V + + A +KG R
Sbjct: 62 LWLNEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALP----ATLKGNARRNAA 115
Query: 533 KA--------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
A + + LSGG++AR+A + ++ L+LDEP + LD+ ++ +
Sbjct: 116 NAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQ 175
Query: 585 AI-SEYKGT---VITVSHD 599
+ SE + + V+HD
Sbjct: 176 WVFSEVRAAGIPTVQVTHD 194
|
Length = 213 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 8e-15
Identities = 76/276 (27%), Positives = 122/276 (44%), Gaps = 45/276 (16%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNR 442
A A K+ +L+ F R Q FP+ + ++N+ F Y+D
Sbjct: 291 TAQVAFNKIAKLELAPYKAD-FPRPQ---AFPDW-----KTLELRNVRFAYQDNAFHVGP 341
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL V AE L+
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV--------SAEQLE 393
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCN--------------FKADMLDRKVSL--LSG 546
+ + V ++ D + G G+ + K + D + S LS
Sbjct: 394 DYRKLFSAV--FSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLST 451
Query: 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS--KEMLEEAISEYKG---TVITVSHD-R 600
G+K RLA +++ +LVLDE D P+ +E + + K T+ +SHD
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQD-PAFRREFYQVLLPLLKEQGKTIFAISHDDH 510
Query: 601 YFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAR 636
YF+ +R++E++ L + G+ ++ AR
Sbjct: 511 YFI--HADRLLEMRNGQLSELTGEERDETARDAVAR 544
|
Length = 546 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 9e-15
Identities = 61/230 (26%), Positives = 108/230 (46%), Gaps = 25/230 (10%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKS 464
R PE R +T +N+ F Y + + + NL I+ GE I+GP+G GKS
Sbjct: 442 RSAGLAALPEL----RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 465 TLLKLIMGLEKPRGGEVLLGEHNVL---PNYFEQNQA----EALDLDKTVLETVAEA--- 514
TL KL+ L P+ G+VL+ ++ P + + E + +++ + +A
Sbjct: 498 TLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPG 557
Query: 515 AEDWRIDDIKGLLGRCNFKADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
A + L G +F +++ + K + LSGG++ R+A + +V +L+
Sbjct: 558 APFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIF 617
Query: 568 DEPTNHLDIPSKEMLEEAISEY-KG-TVITVSHDRYFVKQIVNRVVEVKG 615
DE T+ LD S+ ++ + E +G TVI ++H V+ +V KG
Sbjct: 618 DEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKG 667
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 9e-15
Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 27/194 (13%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
I N+ + +L++++GE ++GP+GCGK+TLL++I GLE+ G + G
Sbjct: 7 IDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66
Query: 487 NV--LP----NYFEQNQAEALDLDKTVLETVA-----------EAAEDWRIDDIKGLLGR 529
++ LP +Y Q+ AL + TV + +A E AE R+ ++ L+G
Sbjct: 67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAE--RVAELLDLVGL 124
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI--- 586
+ + LSGG++ R+A + + LL+LDEP + LD +E L I
Sbjct: 125 PGSE----RKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL 180
Query: 587 -SEYKGTVITVSHD 599
T I V+HD
Sbjct: 181 QRRLGVTTIMVTHD 194
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 72.0 bits (178), Expect = 1e-14
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ +N+S SY + VLKDV+ +K GEKV +VG +G+GK+T L+++ +P SG +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 155 --------IKAKSNMK-IAFLSQEFEVSMSRTVREEFMS 184
+ +S K IA++ Q+ + S T+RE +S
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL-FSGTIRENILS 98
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 1e-14
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SG 152
G++++++ +Y TVL D++ E++ GE + L+G +G GKTT LR IAG + +G
Sbjct: 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 153 NVIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ A ++ +A L Q + + V + AF
Sbjct: 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV--AF------------------ 102
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
L + + + D+ +R A A+ L L D L A S G
Sbjct: 103 ------GLRAQKMPKADIAERVADALKLVGL--------------GDAAAHLPAQLSGGM 142
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + + +PD+LLLDEP + LD
Sbjct: 143 QQRIAIARAIAIEPDVLLLDEPLSALD 169
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 1e-14
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+ + ++S + TVL V V++G VGLVG NGAGKTT LR I G P +G V
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 155 ---IKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S + ++A + Q+ +S VR+ +E
Sbjct: 64 GDDVEALSARAASRRVASVPQDTSLSFEFDVRQ---------------------VVE--- 99
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
MGR FD +T A V + M G A DR V S S G +
Sbjct: 100 -----MGRTPHRSRFDTWT--------ETDRAAVERAMERTG-VAQFADRPVTSLSGGER 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLD 293
R+ L + L Q +LLLDEPT LD++
Sbjct: 146 QRVLLARALAQATPVLLLDEPTASLDIN 173
|
Length = 402 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-14
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 65/244 (26%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM----- 161
+++LK V VK+GE V +VG +G+GK+T L ++AG ++P SG V + +
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ F+ Q F + + T E +E+ G+
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALP----LELRGESSA----------------- 121
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGK 272
D + +AV L G RL A S G Q R++L +
Sbjct: 122 --DSRAGAKALLEAVGL--------------------GKRLTHYPAQLSGGEQQRVALAR 159
Query: 273 ILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
PD+L DEPT +LD T + L ++ +V+++HD L C + +
Sbjct: 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ-LAARCDRQLR 218
Query: 329 TEMG 332
G
Sbjct: 219 LRSG 222
|
Length = 228 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 59/216 (27%), Positives = 98/216 (45%), Gaps = 39/216 (18%)
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------- 483
+ + + + ++ GE IIGP+G GKSTL +L++G+ P G V L
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 484 --GEH-NVLPNYFE-------QNQAE-ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF 532
G H LP E +N A + D E V EAA R+ + L+ R
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADP---EKVIEAA---RLAGVHELILRL-- 458
Query: 533 KADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
D ++ + LSGG++ R+A + + L+VLDEP ++LD + L AI
Sbjct: 459 -PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA 517
Query: 589 YK---GTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
K GTV+ ++H R V++++ ++ + +
Sbjct: 518 AKARGGTVVVIAH-RPSALASVDKILVLQDGRIAAF 552
|
Length = 580 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 58/247 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +EN+SKSY VL DV+ ++ KG ++G NGAGK+T L +++ + DSG +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 158 KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K++ L QE ++ TVR+ + F G+ Q L
Sbjct: 62 GLELTSTPSKELAKKLSILKQENHINSRLTVRD--LVGF-------GRFPYSQGRLTK-- 110
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+D ++ ++ L D DR + S G + R
Sbjct: 111 EDRRIINEAIEYLHL---------------------------EDLSDRYLDELSGGQRQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ +L QD D +LLDEP N+LD + + L LGK +V++ HD F
Sbjct: 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT---IVVVLHDINFAS 200
Query: 321 QLCTKIV 327
IV
Sbjct: 201 CYSDHIV 207
|
Length = 252 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 2e-14
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 57/164 (34%)
Query: 137 TTQLRIIAGQEEPDSGNVI-----------KAKSNMKIAFLSQEFEVSMSRTVREE-FMS 184
+T L++I G +P SG ++ + +I + Q+ ++ TVRE F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244
+E + R ++ALE
Sbjct: 61 LRDKEAD-----ARAEEALE---------------------------------------- 75
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+G V + S G + R+++ + LL+ P LLLLDEPT
Sbjct: 76 RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-14
Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 48/204 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ EN+SK Y + DV +++GE + L+G +G+GKTT L++I EP SG + I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 157 AKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ KI ++ Q+ + TV E A ++ K ++A E
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADEL-- 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+G LD + R EL S G Q R
Sbjct: 118 --LDLVG--LDPSEYADRYPH----------------EL--------------SGGQQQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
+ + + L DP +LL+DEP LD
Sbjct: 144 VGVARALAADPPILLMDEPFGALD 167
|
Length = 309 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 80/268 (29%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
S ++++N+ K + G TVL + EVK GE V ++G +G+GKTT LR I E+P++G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 155 -----------IKAKSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
+ + + + F+ Q F + RTV E I G +
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI---------IEGPVI 112
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ E A A+ +L+ ++G +
Sbjct: 113 VKGEPKEEAT-----------------------------ARARELLAKVGLAGKE-TSYP 142
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+++ + L P+++L DEPT+ LD L+TI L ++ MV
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR----QLAQEKRTMV 198
Query: 311 IISH---------DRA-FLDQLCTKIVE 328
I++H DRA F+DQ +IVE
Sbjct: 199 IVTHEMSFARDVADRAIFMDQ--GRIVE 224
|
Length = 250 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 3e-14
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 85/251 (33%)
Query: 98 VKLENISKSY---------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
++++N+ K + + V + V++ +K+GE +GLVG +G GK+T R+I G EE
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
P SG ++ I LS KEE + ERV + LE
Sbjct: 65 PTSGEILFEG--KDITKLS-------------------KEE-----RRERVLELLE---- 94
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++G + R S G + R+
Sbjct: 95 ------------------------------------KVGLPEEFLYRYPHELSGGQRQRI 118
Query: 269 SLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
+ + L +P L++ DEP + LD L+ ++ L+ LG + + ISHD + +
Sbjct: 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---LTYLFISHDLSVVRY 175
Query: 322 LCTKIVETEMG 332
+ +I +G
Sbjct: 176 ISDRIAVMYLG 186
|
Length = 268 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 3e-14
Identities = 57/207 (27%), Positives = 96/207 (46%), Gaps = 25/207 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N+ + + NL + G A++GP+G GKSTLL++I GLE+P G + L
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
+ + Q AL TV + +A +A R++++ L+
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKE----MLEE 584
DR + LSGG++ R+A + + V+P LL LDEP LD ++ L +
Sbjct: 121 EGLG----DRYPNQLSGGQRQRVALARALAVEPQVLL-LDEPFGALDAKVRKELRSWLRK 175
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
E T + V+HD+ ++ +R+V
Sbjct: 176 LHDEVHVTTVFVTHDQEEAMEVADRIV 202
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 3e-14
Identities = 54/220 (24%), Positives = 102/220 (46%), Gaps = 37/220 (16%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + +KNL + + + + +L ++ GE AIIGP+G GK+TLL+ I LE+P G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 483 LGEHNV---LPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWR 519
+G+ + ++ L +TVLE + E ++
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEA 121
Query: 520 IDDIKGLLGRCNF--KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ LL + K R+ LSGG++ R+A + + +++ DEPT+ LD
Sbjct: 122 TARARELLAKVGLAGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTSALD-- 176
Query: 578 SKEMLEE------AISEYKGTVITVSHDRYFVKQIVNRVV 611
E++ E +++ K T++ V+H+ F + + +R +
Sbjct: 177 -PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAI 215
|
Length = 250 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 72.6 bits (178), Expect = 3e-14
Identities = 51/181 (28%), Positives = 70/181 (38%), Gaps = 45/181 (24%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG----EHNVLPN------YFEQNQAE 499
GE ++GPNG GKSTLL + G+ G + E Y Q Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 500 ALDL-----------DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ DKT E ++D+ G L D L R + LSGGE
Sbjct: 84 PFAMPVWHYLTLHQPDKTRTE---------LLNDVAGALAL----DDKLGRSTNQLSGGE 130
Query: 549 --KARLAFCKFMVKP-----STLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSH 598
+ RLA + P LL+LDEP N LD+ + L+ +S ++ SH
Sbjct: 131 WQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSH 190
Query: 599 D 599
D
Sbjct: 191 D 191
|
Length = 248 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 4e-14
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 53/230 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+K+EN+SK +K LK+V+ EV++G+ ++G G+GK+ L IAG +PDSG ++
Sbjct: 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 156 -KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
K +N+ I+++ Q + + TV + A+ + K E +K LE
Sbjct: 60 GKDITNLPPEKRDISYVPQNYALFPHMTVYKNI--AYGLKKRKVDKKEIERKVLE----- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ +L LL RK + S G Q R++
Sbjct: 113 ---IAEMLGIDHLLNRK------------------------------PETLSGGEQQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + L+ +P +LLLDEP + LD+ T E L+ + V ++ ++HD
Sbjct: 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 4e-14
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 50/202 (24%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI----- 155
+N++K+YKG V++DV+ V GE VGL+G NGAGKTT ++ G D+GN+I
Sbjct: 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED 66
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
A++ I +L QE + +V + M+ ++I L Q+
Sbjct: 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV----LQIRDDLSAEQRE------- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
D L++EF + L +G S S G + R+
Sbjct: 116 -DRANELMEEFH-----------------IEHLRDSMG----------QSLSGGERRRVE 147
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
+ + L +P +LLDEP +D
Sbjct: 148 IARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 5e-14
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 23/186 (12%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQ-----NQ 497
E GE T ++G NG GK+TLL++I L P G+V + + + P++ +
Sbjct: 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFG 82
Query: 498 AEALDLDKTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
L T E + A RI ++ L + LDR+V S G
Sbjct: 83 ERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL----LEYLDRRVGEFSTGM 138
Query: 549 KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQ 605
K ++A + +V ++LVLDEPT+ LDI ++ + I + K VI SH V+
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEA 198
Query: 606 IVNRVV 611
+ +RV+
Sbjct: 199 LCDRVI 204
|
Length = 245 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 5e-14
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 54/246 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
L+ +S S+ G L D+++ V GE L+G NGAGKTT + +I G+ P G V
Sbjct: 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
Query: 155 ---IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ +IA Q+ V + TVR E +E+A ++ A
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR--------ENLELALNRDKSVFAS--- 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGDRLVASFSSGW 264
L RL E + +D L L D+ DRL A S G
Sbjct: 116 -----LFARLRAE--------ERRRIDEL----------LATIGLGDERDRLAALLSHGQ 152
Query: 265 QMRMSLGKILLQDPDLLLLDEP----TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ + +G +L QDP LLLLDEP T+ T E L+ GK + +++ HD F+
Sbjct: 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI--LVVEHDMGFVR 210
Query: 321 QLCTKI 326
++ K+
Sbjct: 211 EIADKV 216
|
Length = 249 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 5e-14
Identities = 56/181 (30%), Positives = 91/181 (50%), Gaps = 30/181 (16%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LL 483
+ + + Y D+++ N + TI RGE ++GPNG GKST+ ++++G+ P G++ +L
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 484 GEH------------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKG 525
GE V+P Q + LD + TV E + + + I
Sbjct: 65 GEPVPSRARLARVAIGVVP------QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS 118
Query: 526 LL--GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
LL R KAD+ +V+LLSGG K RL + ++ LL+LDEPT LD ++ ++
Sbjct: 119 LLEFARLESKADV---RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIW 175
Query: 584 E 584
E
Sbjct: 176 E 176
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 5e-14
Identities = 60/182 (32%), Positives = 84/182 (46%), Gaps = 29/182 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE---- 499
L ++RGE AI+GP+G GKSTLL ++ GL+ P GEV L L E +A
Sbjct: 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQP-LHKLDEDARAALRAR 88
Query: 500 ---------ALDLDKTVLETVA-------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
L + T LE VA E++ D R K LL L +
Sbjct: 89 HVGFVFQSFHLIPNLTALENVALPLELRGESSADSR-AGAKALLEAVGL-GKRLTHYPAQ 146
Query: 544 LSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSH 598
LSGGE+ R+A + F +P +L DEPT +LD + + +L E T++ V+H
Sbjct: 147 LSGGEQQRVALARAFAGRPD-VLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205
Query: 599 DR 600
D
Sbjct: 206 DP 207
|
Length = 228 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 73.3 bits (180), Expect = 5e-14
Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 33/170 (19%)
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE--------HN-----VLPNY-------FE 494
++GP+GCGK+TLL+L+ G E+P G ++L H V +Y E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554
+N A L + K + R+ + L+ + DRK LSGG++ R+A
Sbjct: 61 ENVAFGLKMRKVPRAEIKP-----RVLEALRLVQL----EEFADRKPHQLSGGQQQRVAL 111
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLE---EAISEYKG-TVITVSHDR 600
+ +V +L+LDEP + LD ++ ++ + I E G T + V+HD+
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQ 161
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 5e-14
Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 31/193 (16%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501
AN T+ TA+ GP+G GK++L+ +I GL +P G + L VL + + L
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR-VL---VDAEKGIFL 71
Query: 502 DLDK----------------TV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
+K TV L + + D + LLG +LDR
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPG 127
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSH 598
LSGGEK R+A + ++ LL++DEP LD+P K LE E ++ VSH
Sbjct: 128 TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSH 187
Query: 599 DRYFVKQIVNRVV 611
V ++ +RVV
Sbjct: 188 SLDEVLRLADRVV 200
|
Length = 352 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-14
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
V+ +N++ Y G VL+D++ ++ GE V LVG +G+GK+T + +I + DSG +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKLERVQK 201
S +I +SQ+ F + TV E IA G+ ++
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLF----NDTVAE----------NIAYGRPGATRE 106
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
+E A A+A N + +PE G+ G+R V S
Sbjct: 107 EVEEA--------------------ARAANAHEFIME----LPE-GYDTVIGERGV-KLS 140
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + LL+DP +L+LDE T+ LD ++
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTES 173
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 6e-14
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 29/226 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ K + + + + ++ E G I+GP+G GKSTL+KLI L P G +L+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 485 EHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLL 527
++ P+ FE + ++ + + + D++ L
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPML--------KGEKNVDVEYYL 115
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
+ R V LSGGE R++ + + +L+LDEPT+ LD S E++EE I
Sbjct: 116 SIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175
Query: 588 EYKG----TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629
+ K TVI ++H+ K+I + + L +YA Y+++
Sbjct: 176 KLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFT 221
|
Length = 241 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 7e-14
Identities = 57/203 (28%), Positives = 81/203 (39%), Gaps = 52/203 (25%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
++NI K + T LKD++ VKKGE V L+G +G GKTT LRIIAG E +G + +
Sbjct: 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI--YQ 63
Query: 159 SNMKIAFLS----------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
I L Q + + + TV + A+ + G+ E ++ E
Sbjct: 64 GGRDITRLPPQKRDYGIVFQSYALFPNLTVADNI--AYGLKNRGMGRAEVAERVAE---- 117
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
LLD L + S G Q R+
Sbjct: 118 -------LLDLVGLP---------------------------GSERKYPGQLSGGQQQRV 143
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + L P LLLLDEP + LD
Sbjct: 144 ALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 9e-14
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 45/188 (23%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------------- 490
T G+ I+GPNG GKST LK++ G KP LG + P
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN-----LGRYEDPPSWDEVIKRFRGTELQ 150
Query: 491 NYFEQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
NYF++ L + V E + + E + D++ LG N +
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN----V 206
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA-----ISEYKG 591
LDR VS LSGGE R+A +++ + + DEP+++LDI ++ L A ++E
Sbjct: 207 LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDI--RQRLNAARVIRELAEDGK 264
Query: 592 TVITVSHD 599
VI V HD
Sbjct: 265 YVIVVEHD 272
|
Length = 591 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 1e-13
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN++ SY + VLKD+ + +K GE V +VG GAGKTT + ++ +P G +
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K+ +M I + Q+ S T+ E
Sbjct: 63 DGIDIRDISRKSLRSM-IGVVLQD-TFLFSGTIMENI----------------------- 97
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVASFSSGW 264
+GR + + A+ K+ LG ++G L S G
Sbjct: 98 ------RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG---ENGGNL----SQGE 144
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
+ +++ + +L+DP +L+LDE T+++D +T + ++ L K + +II+H
Sbjct: 145 RQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 65/214 (30%), Positives = 98/214 (45%), Gaps = 54/214 (25%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ ++NL Y + + LF+ ++ I + TA IGP+GCGKSTLL+ M ++ R
Sbjct: 26 LEVRNLNLFYGDKQALFD-ISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIE 84
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
GE+ L N+ PN F +N L L ++ VL+
Sbjct: 85 GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEA 144
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W D++K D L LSGG++ RL + + ++P LL
Sbjct: 145 VERSLRGAALW--DEVK----------DRLHENAFGLSGGQQQRLVIARAIAIEPEVLL- 191
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
LDEPT+ LD S +EE I+E K T++ V+H
Sbjct: 192 LDEPTSALDPISTLKIEELITELKSKYTIVIVTH 225
|
Length = 272 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-13
Identities = 55/184 (29%), Positives = 87/184 (47%), Gaps = 25/184 (13%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ----NQA 498
GE + G +G GKSTLLKLI G+E+P G++ H++ +P Q Q
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 499 EALDLDKTVLETVA-----EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL---LSGGEKA 550
L +D+TV + VA A DDI+ + K +LD+ + LSGGE+
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAGASG---DDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQ 144
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
R+ + +V +L+ DEPT +LD E + E+ TV+ +HD + +
Sbjct: 145 RVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRS 204
Query: 608 NRVV 611
R++
Sbjct: 205 YRML 208
|
Length = 222 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 74.0 bits (182), Expect = 1e-13
Identities = 60/209 (28%), Positives = 101/209 (48%), Gaps = 27/209 (12%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
R ER R G V +N+ F Y DR + +L IE GE A++G +G GKSTL+ LI
Sbjct: 322 RAIERAR-GD--VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 471 MGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAA-EDWRIDD 522
+P G++LL H++ L + + + T+ +A E +
Sbjct: 379 PRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAE 438
Query: 523 IKGLLGRCNFKADMLDR-----------KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
I+ L + D +D+ LLSGG++ RLA + ++K + +L+LDE T
Sbjct: 439 IERALAAAYAQ-DFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEAT 497
Query: 572 NHLDIPSKEMLEEAISE-YKG-TVITVSH 598
+ LD S+ +++ A+ +G T + ++H
Sbjct: 498 SALDNESERLVQAALERLMQGRTTLVIAH 526
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 45/211 (21%)
Query: 424 VVTIKNLE--FGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
V++I+NL +G+ ++LF+ NL I GE + GP+G GK+TLL LI GL +
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFD-INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE 59
Query: 479 GEV-LLGE-----------------------HNVLPNY-FEQNQAEALDL-DKTVLETVA 512
G + +LG+ HN+L QN AL+L +
Sbjct: 60 GSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEAR 119
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
E A + GL ++ LSGG+K R+A + +V L++ DEPT
Sbjct: 120 ERARAML--EAVGLGDHLDYYPHN-------LSGGQKQRVAIARALVHRPKLVLADEPTA 170
Query: 573 HLDIPSK----EMLEEAISEYKGTVITVSHD 599
LD S E++++ E T++ V+HD
Sbjct: 171 ALDSKSGRDVVELMQKLAREQGCTILIVTHD 201
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 2e-13
Identities = 38/118 (32%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 564 LLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623
+L+LDEPTN+LDI + LE+ ++E T+I +SHDR+F+ + + ++ L+ Y G
Sbjct: 176 ILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPG 235
Query: 624 DYNYYLEKNLDAREKEL-------EREAELEERAPKIKA-KSKMSKAEKEARKKQKMQ 673
+Y+ Y+ ARE+ L + AEL+ + A SK +A A++ K++
Sbjct: 236 NYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIK 293
|
Length = 530 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-13
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 37/202 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+ ++ G + +++ + GE + + G NG+GKTT LRI+AG P +G
Sbjct: 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-------- 55
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
V ++ + + + G + K S ++++ +
Sbjct: 56 ----------RVLLNGGPLDFQRDSIARGLLYLGHAPGI-KTTLSVLENLRFWHADHSDE 104
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ + A+ V L+ GF DR VA S+G Q R++L ++LL L
Sbjct: 105 QVEEALAR-VGLN-------------GF----EDRPVAQLSAGQQRRVALARLLLSGRPL 146
Query: 281 LLLDEPTNHLDLDTIEWLEGYL 302
+LDEPT LD + +
Sbjct: 147 WILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ V L N++K+Y V + KD+ ++ +GE V VG +G GK+T LR+IAG E+ SG++
Sbjct: 2 ASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61
Query: 156 KAKSNMKIAFLSQEFEVS-MSRTVREEFMS-------AFKEEMEIAGKLERVQKA-LESA 206
+ M +V R V F S + E M KL +K +
Sbjct: 62 IGEKRMN--------DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQR 113
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
V+ + +L LL RK +A+ S G +
Sbjct: 114 VNQ---VAEVLQLAHLLDRKPKAL------------------------------SGGQRQ 140
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G+ L+ +P + LLDEP ++LD
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 2e-13
Identities = 59/188 (31%), Positives = 89/188 (47%), Gaps = 40/188 (21%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV- 481
+ + +N+E Y D+L+ + + ++RGE ++GPNG GK+T L++++GL P G +
Sbjct: 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 482 LLGEH------------NVLPNYFEQNQAEALDLDKTVLE-----------TVAEAAEDW 518
L GE V+P Q + LD D TV E + A A
Sbjct: 66 LCGEPVPSRARHARQRVGVVP------QFDNLDPDFTVRENLLVFGRYFGLSAAAARA-- 117
Query: 519 RIDDIKGLL--GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+ LL + KAD KV LSGG K RL + +V +LVLDEPT LD
Sbjct: 118 ---LVPPLLEFAKLENKADA---KVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDP 171
Query: 577 PSKEMLEE 584
++ ++ E
Sbjct: 172 QARHLMWE 179
|
Length = 306 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-13
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + + R +R F ++ + L + +E+ + L
Sbjct: 63 GNHFDFSKTPSDKAI---RDLRRNVGMVF-QQYNLWPHLTVQENLIEAPCRVLGLSKD-- 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
Q A+A KL+ L DR S G Q R+++ + L+ +
Sbjct: 117 ------QALARAE----------KLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMME 159
Query: 278 PDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
P +LL DEPT LD + I+ L + VI++H+ + +++V E
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE----TGITQVIVTHEVEVARKTASRVVYME 215
Query: 331 MG 332
G
Sbjct: 216 NG 217
|
Length = 242 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 49/205 (23%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-I 155
++ EN++K Y G + ++ E+ KGE + L+G +G+GKTT +++I EP SG + I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 156 KAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ KI ++ Q+ + TV +E + + KL + K
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTV--------EENIALVPKLLKWPKE---- 108
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + +A D L A V + F DR S G Q
Sbjct: 109 -----------------KIRERA---DELLALVG--LDPAEF----ADRYPHELSGGQQQ 142
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L DP LLL+DEP LD
Sbjct: 143 RVGVARALAADPPLLLMDEPFGALD 167
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 2e-13
Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 63/236 (26%)
Query: 420 SGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
SG + + + F Y L+ + +L IE GE AI+GP+G GKSTLL+L++G E P
Sbjct: 449 SGA--IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDK-----------------TVLETVAEAA----- 515
G V +++ LD+ ++ E +A A
Sbjct: 507 SGSV----------FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLD 556
Query: 516 EDWRI-------DDIK----GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
E W +DI+ G+ ++ LSGG++ RL + +V+ +
Sbjct: 557 EAWEAARMAGLAEDIRAMPMGM-------HTVISEGGGTLSGGQRQRLLIARALVRKPRI 609
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSH--------DRYFVKQIVNRVVE 612
L+ DE T+ LD ++ ++ E++ K T I ++H DR +V RVV+
Sbjct: 610 LLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRNADRIYVLD-AGRVVQ 664
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 2e-13
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 57/211 (27%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+NISK + + + L +V+ + GE G++G +GAGK+T +R I E P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
V+ ++ +I + Q F + SRTV + A +E+AG
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV--ALP--LELAGT----- 112
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260
KA+ + A+V++L+ +G +D DR A
Sbjct: 113 ------------------------PKAE------IKARVTELLELVGL-SDKADRYPAQL 141
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L +P +LL DE T+ LD
Sbjct: 142 SGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 2e-13
Identities = 61/209 (29%), Positives = 90/209 (43%), Gaps = 37/209 (17%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
S ++V ++ + F +R +F+ +LT+ RG+ TAI+GP+G GK+TLL+LI G P G
Sbjct: 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62
Query: 480 EVLLGEHNVLPNYFEQN------------QAEALDLDKTVLETVA-EAAEDWRIDDI--- 523
E+L N+ P Q+ AL D V + VA E ++
Sbjct: 63 EILFDGENI-PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLH 121
Query: 524 ---------KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
GL G S LSGG R A + + L++ DEP
Sbjct: 122 STVMMKLEAVGLRGAAKLMP-------SELSGGMARRAALARAIALEPDLIMFDEPFVGQ 174
Query: 575 DIPSKEMLEEAISEYKG----TVITVSHD 599
D + +L + ISE T + VSHD
Sbjct: 175 DPITMGVLVKLISELNSALGVTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 63/206 (30%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+ ++NL F Y NL I + + TA IGP+GCGKSTLL+ L
Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAE- 72
Query: 478 GGEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAEDW 518
GE+LL N+L P F + + + + E ++ A D
Sbjct: 73 -GEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDE 131
Query: 519 RIDDI--KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLD 575
R++ K L N D L + LSGG++ RL + ++P LL LDEP + LD
Sbjct: 132 RVEWALTKAAL--WNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLL-LDEPCSALD 188
Query: 576 IPSKEMLEEAISEYKG--TVITVSHD 599
S +EE I+E K TV+ V+H+
Sbjct: 189 PISTGRIEELITELKQDYTVVIVTHN 214
|
Length = 260 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 2e-13
Identities = 60/206 (29%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 425 VTIKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+T + +E Y+ + F R N++I G AIIG G GKSTLL+ + GL +P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDKTV------------LETVAE----------AAED 517
V +GE + + + L K V ETV + +E+
Sbjct: 63 TVTIGERVITA---GKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEE 119
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ ++ ++L R LSGG+ R+A + +LVLDEPT LD P
Sbjct: 120 DAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLD-P 178
Query: 578 S--KEMLE--EAISEYKG-TVITVSH 598
KEM+E + + KG T + V+H
Sbjct: 179 KGRKEMMEMFYKLHKEKGLTTVLVTH 204
|
Length = 290 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 3e-13
Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 36/191 (18%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFE 494
++E+GE ++GPNG GK+T +++I+G+ P GEVL + LP
Sbjct: 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLP---- 76
Query: 495 QNQAEALDLDKTVLE-----------TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
+ L V++ EA RID+ L R ++ +++V
Sbjct: 77 --EERGLYPKMKVIDQLVYLAQLKGLKKEEARR--RIDE---WLERLEL-SEYANKRVEE 128
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDR 600
LS G + ++ F ++ LL+LDEP + LD + E+L++ I E TVI +H
Sbjct: 129 LSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQM 188
Query: 601 YFVKQIVNRVV 611
V+++ +RV+
Sbjct: 189 ELVEELCDRVL 199
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 3e-13
Identities = 55/172 (31%), Positives = 84/172 (48%), Gaps = 30/172 (17%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEH------ 486
Y D+ + N + T+ GE ++GPNG GKST+ ++I+G+ P G++ +LG
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110
Query: 487 ------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLL--GRCNF 532
V+P Q + LDL+ TV E + + + I LL R
Sbjct: 111 LARARIGVVP------QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 164
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
KAD +VS LSGG K RL + ++ LL+LDEPT LD ++ ++ E
Sbjct: 165 KADA---RVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
|
Length = 340 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 3e-13
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 50/205 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ NI KS+ VL D++ ++ G+ V L+G +G+GKTT LRIIAG E SG++
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ A+ + K+ F+ Q + + TV + AF + L R ++
Sbjct: 63 GTDVSRLHAR-DRKVGFVFQHYALFRHMTVFDNI--AFGLTV-----LPRRERP------ 108
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL--MPELGFTADDGDRLVASFSSGWQM 266
N + AKV++L M +L A DR A S G +
Sbjct: 109 ----------------------NAAAIKAKVTQLLEMVQLAHLA---DRYPAQLSGGQKQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L +P +LLLDEP LD
Sbjct: 144 RVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-13
Identities = 54/198 (27%), Positives = 95/198 (47%), Gaps = 22/198 (11%)
Query: 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ ++N+ F Y + + I GE AI+G NG GKST+ K++ GL KP+ GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 481 VLL-GEHNVLPNYFE---------QNQAEALDLDKTVLETVAEAAEDWRID--DIKGLLG 528
+ + G N E QN + TV + +A E+ ++ +K ++
Sbjct: 66 IKIDGITISKENLKEIRKKIGIIFQNPDNQF-IGATVEDDIAFGLENKKVPPKKMKDIID 124
Query: 529 RCNFKADM---LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
K M LD++ LSGG+K R+A + +++ DE T+ LD K +++
Sbjct: 125 DLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKI 184
Query: 586 ISEY----KGTVITVSHD 599
+ + K T+I+++HD
Sbjct: 185 MVDLRKTRKKTLISITHD 202
|
Length = 271 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 3e-13
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 20/187 (10%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+F Y D+ L + + + G + G NG GK+TLLKLI GL P GE+L ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 489 ---LPNYFEQ--------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD-M 536
L Y +Q L L + L + + I ++ L F + +
Sbjct: 66 KKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCRL-----FSLEHL 120
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---GTV 593
+D LLS G+K ++A + + + L +LDEP LD S + I E++ G V
Sbjct: 121 IDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAV 180
Query: 594 ITVSHDR 600
+ SH
Sbjct: 181 LLTSHQD 187
|
Length = 200 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (175), Expect = 3e-13
Identities = 58/198 (29%), Positives = 100/198 (50%), Gaps = 29/198 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +KN+ + + + NLTI++G ++GP+GCGK+T+L+L+ GLEKP G++ +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETV-----------AEAAEDWRIDDIKGLL 527
+V +Q Q+ AL ++ E V E + R+ + L+
Sbjct: 67 GEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQ--RVKEALELV 124
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSKEMLEEAI 586
F+ DR V +SGG++ R+A + ++ KP LL DEP ++LD + + E I
Sbjct: 125 DLAGFE----DRYVDQISGGQQQRVALARALILKPKVLL-FDEPLSNLDANLRRSMREKI 179
Query: 587 SEYKG----TVITVSHDR 600
E + T + V+HD+
Sbjct: 180 RELQQQFNITSLYVTHDQ 197
|
Length = 351 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 3e-13
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E ++KS+ + ++++EV GE GL+G NGAGKTT R+I G EP G +
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 155 -----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKALESAVD 208
+ + +I +L +E + TV ++ K E+ G +QK L+
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ----LKYLAELKGMPKAEIQKKLQ---- 112
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+R L+ + K K + S G Q ++
Sbjct: 113 ------------AWLER------LEIVGKKTKK---------------IKELSKGNQQKI 139
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLE 299
++ +P+LL+LDEP + LD +E L+
Sbjct: 140 QFISAVIHEPELLILDEPFSGLDPVNVELLK 170
|
Length = 300 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 4e-13
Identities = 58/208 (27%), Positives = 94/208 (45%), Gaps = 28/208 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y D + + RGE ++GPNG GK+T +K++ L KP G +
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETV-----------AEAAEDWRIDDIKGL 526
H+V+ P + Q ++D + T E + AE E RID++
Sbjct: 61 GHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRE--RIDELLDF 118
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
+G DR V SGG + RL + +V +L LDEPT LD ++ + E I
Sbjct: 119 VGLLEAA----DRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYI 174
Query: 587 SEYKG----TVITVSHDRYFVKQIVNRV 610
+ K T++ +H +Q+ +RV
Sbjct: 175 EKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 46/161 (28%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNY 492
+ N +L +E G+ AI+G +G GK+TLL I G + G G++L P+
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 493 FEQNQAEALDLDK-----TVLETV------------AEAAEDWRIDDIKGLLGRCNFKAD 535
F++ A D TV ET+ ++A R++D+ LL
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDLALT-R 135
Query: 536 MLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
+ V +SGGE+ R++ + + P L+ LDEPT+ LD
Sbjct: 136 IGGNLVKGISGGERRRVSIAVQLLWDPKVLI-LDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 4e-13
Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 33/222 (14%)
Query: 423 SVVTIKNLEFGYEDRLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
S++ ++++ Y LF +L+IE GE ++G +GCGKSTL +L++GL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQA-------------EALDLDKTVLETVAEAAEDW-- 518
EKP G V ++ +Q +A A++ TV + + E
Sbjct: 61 EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS 120
Query: 519 -----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
+ I LL +++ D+ LSGG+ R+ + + L+VLDE ++
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 574 LDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
LD+ + E+L + + + ++HD V+ RV
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVA 222
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 5e-13
Identities = 68/270 (25%), Positives = 118/270 (43%), Gaps = 51/270 (18%)
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
A A K+L L P + M + PE ++++N+ +
Sbjct: 285 SGARQAYKRLNELLANY----PSRDPAMPLPEPE------GHLSVENVTIVPPGGKKPTL 334
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-------------GEH- 486
+ +++ GE AIIGP+G GKSTL +LI+G+ P G V L G+H
Sbjct: 335 RGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHI 394
Query: 487 NVLPNYFE-------QNQA---EALDLDKTVLETVAEAAEDWRIDDIKGLLGRC--NFKA 534
LP E +N A E D +K + EAA ++ + L+ R +
Sbjct: 395 GYLPQDVELFPGTVAENIARFGENADPEK-----IIEAA---KLAGVHELILRLPDGYDT 446
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK---G 591
+ +L SGG++ R+A + + L+VLDEP ++LD ++ L AI K
Sbjct: 447 VIGPGGATL-SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGI 505
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
TV+ ++H R + V++++ ++ + +
Sbjct: 506 TVVVITH-RPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 5e-13
Identities = 61/207 (29%), Positives = 103/207 (49%), Gaps = 39/207 (18%)
Query: 423 SVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++ +KNL F Y +++ N + +++GE +IIG NG GKST ++LI GL + G
Sbjct: 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62
Query: 480 EV-----LLGEHNVLP-------------NYF-----EQNQAEALDLDKTVLETVAEAAE 516
++ LL E NV N F E + A L+ E + E
Sbjct: 63 QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--- 119
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
R+++ L+G +FK +R+ + LSGG+K R+A + +++LDE T+ LD
Sbjct: 120 --RVNEALELVGMQDFK----EREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 577 PSKEMLEEAI----SEYKGTVITVSHD 599
+ L + I +Y+ TVI+++HD
Sbjct: 174 EGRLELIKTIKGIRDDYQMTVISITHD 200
|
Length = 279 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 6e-13
Identities = 57/223 (25%), Positives = 93/223 (41%), Gaps = 49/223 (21%)
Query: 427 IKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
I+NL Y + F + N+ IE GE +IG G GKSTL++ + GL KP G++
Sbjct: 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64
Query: 482 LLGEHNV-------------------LPNY--FEQNQAEALDL--------DKTVLETVA 512
++ ++ P Y FE+ + + ++ + V
Sbjct: 65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVK 124
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
A +D D D+ LSGG+K R+A + +L+LDEPT
Sbjct: 125 RAMNIVGLD-----------YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTA 173
Query: 573 HLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVV 611
LD ++ + I EY T+I VSH V ++ +R++
Sbjct: 174 GLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRII 216
|
Length = 287 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 62/236 (26%), Positives = 96/236 (40%), Gaps = 50/236 (21%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPR---G 478
++ + +L Y + N +L E TA+IGP+G GKSTLL+ I M P
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 479 GEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETV 511
G ++ HN+ PN F +N L L DK VL+
Sbjct: 65 GSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEA 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
E A W D++K D L LSGG++ R+ + + +++L
Sbjct: 125 VEKSLKGASIW--DEVK----------DRLHDSALGLSGGQQQRVCIARVLATSPKIILL 172
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
DEPT+ LD S +EE + K T++ V+ +I +R +L +Y
Sbjct: 173 DEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEY 228
|
Length = 252 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 6e-13
Identities = 67/216 (31%), Positives = 98/216 (45%), Gaps = 56/216 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+++K+L+ Y D + NL IE + TA+IGP+GCGKST L+ LI ++
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIE- 62
Query: 478 GGEVLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLET 510
GEVLL ++ PN F N A DK L+
Sbjct: 63 -GEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDE 121
Query: 511 VAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLL 565
+ E A W D++K D L + LSGG++ RL + + V+P LL
Sbjct: 122 IVEKSLKGAALW--DEVK----------DRLKKSALGLSGGQQQRLCIARALAVEPEVLL 169
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEPT+ LD S +EE I E K T++ V+H+
Sbjct: 170 -MDEPTSALDPISTLKIEELIQELKKDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 8e-13
Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 37/231 (16%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL +V+ +++GE VGL+G +G GK+T R++ G E+P G V +F Q+
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV---------SFRGQD- 74
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ + R++ AF+ ++++ V + SAV+ + +++ E
Sbjct: 75 ---LYQLDRKQ-RRAFRRDVQL------VFQDSPSAVNPRMTVRQIIGE--------PLR 116
Query: 231 NLDTLD-----AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDE 285
+L +LD A++++L+ +G ++D D+L S G R+++ + L P L++LDE
Sbjct: 117 HLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176
Query: 286 PTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
++LD+ +E L + I+HD + C ++ + G
Sbjct: 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 8e-13
Identities = 60/228 (26%), Positives = 104/228 (45%), Gaps = 53/228 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++ + + + N ++ GEK A+IGP+G GKST+L+++M LE G++ +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV- 59
Query: 485 EHNVLPNYFEQN----QAEALDL------------------DKTVLETVAEA-------- 514
E L + +N A+ L KTVL+ V EA
Sbjct: 60 EGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMA 119
Query: 515 ---AEDWRID--DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
AE ++ D+ GL AD D + LSGG++ R+A + + +++ DE
Sbjct: 120 RAEAEKRAMELLDMVGL-------ADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDE 172
Query: 570 PTNHLDIPSKEMLEEAI-------SEYKGTVITVSHDRYFVKQIVNRV 610
T+ LD E++ E + SE+ T++ V+H+ F ++ +RV
Sbjct: 173 VTSALD---PELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRV 217
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 8e-13
Identities = 50/156 (32%), Positives = 77/156 (49%), Gaps = 37/156 (23%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------------VLP 490
+L + GE ++GP+GCGKSTLL+++ GLE+ GE+ +G V
Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83
Query: 491 NY-------FEQNQAEALD---LDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
NY +N A L + K +E VAEAA RI ++ +LDR
Sbjct: 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA---RILEL----------EPLLDR 130
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
K LSGG++ R+A + +V+ + + DEP ++LD
Sbjct: 131 KPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 9e-13
Identities = 49/166 (29%), Positives = 75/166 (45%), Gaps = 14/166 (8%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L + + R +LTI GE ++GP+GCGK+TLL LI G P G + L +
Sbjct: 11 LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70
Query: 490 PNYFEQN---QAEALDLDKTVLETVA--------EAAEDWRIDDIKGLLGRCNFKADMLD 538
E+ Q EAL V++ VA E A+ R + +L
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQ--RREIAHQMLALVGL-EGAEH 127
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ + LSGG + R+ + + LL+LDEP LD ++E ++E
Sbjct: 128 KYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQE 173
|
Length = 259 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 9e-13
Identities = 53/194 (27%), Positives = 87/194 (44%), Gaps = 26/194 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL ++R+LF+ + T+ GE I GPNG GK++LL+++ GL +P GEVL
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
Query: 484 -GE--HNVLPNYFEQ----NQAEALDLDKTVLETVA-------EAAED--WRIDDIKGLL 527
GE Y + + + T LE + ++ W GL
Sbjct: 61 QGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA 120
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
G D V LS G++ R+A + + + L +LDEP +D LE ++
Sbjct: 121 GF-------EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLA 173
Query: 588 EY---KGTVITVSH 598
++ G VI +H
Sbjct: 174 QHAEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 1e-12
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 42/199 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V L+NI+K + TV+ ++ +K+G V L+G +G GKTT LR++AG E+P G +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI--- 63
Query: 158 KSNMKIAFLSQEFEVSMS----RTVREEFMS-AFKEEMEIAGKLERVQKALESAVDDMDL 212
F+ E +V+ R + F S A M + E V L+ +
Sbjct: 64 -------FIDGE-DVTHRSIQQRDICMVFQSYALFPHMSLG---ENVGYGLK-------M 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+G +E QR +A+ L L GF DR V S G Q R++L +
Sbjct: 106 LGVPKEE--RKQRVKEALELVDLA----------GF----EDRYVDQISGGQQQRVALAR 149
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+ P +LL DEP ++LD
Sbjct: 150 ALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-12
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+SKSY G +DV++++ GE +G+VG +G+GK+T L +AG+ PD G +
Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
L Q E R +R E+ F + G RV M + R
Sbjct: 68 AELELYQLSEAERRRLMRTEW--GFVHQNPRDGLRMRVSAGANIGERLMAIGAR------ 119
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
+ + A + E+ D L +FS G Q R+ + + L+ P L+
Sbjct: 120 ---------HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170
Query: 282 LLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+DEPT LD+ ++ L G + + ++I++HD
Sbjct: 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (167), Expect = 1e-12
Identities = 65/216 (30%), Positives = 99/216 (45%), Gaps = 52/216 (24%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG-- 478
++ +K+L Y ++ N ++ IE+ TA+IGP+GCGKST L+ I M P
Sbjct: 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARS 79
Query: 479 -GEVLLGEHNVL-------------------PNYFEQ----NQAEALD---------LDK 505
GE+L N+L PN F + N AL LD+
Sbjct: 80 EGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDE 139
Query: 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
V E++ +AA W D++K D L LSGG++ RL + + +L
Sbjct: 140 IVEESLTKAAL-W--DEVK----------DRLHSSALSLSGGQQQRLCIARTLAMKPAVL 186
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+LDEP + LD S +EE I+E K ++I V+H+
Sbjct: 187 LLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-12
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
V + S G + R+ L ++ L+ +LL+LDEPTN LD++T+E LE L ++++SHDR
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497
Query: 317 AFLDQLCTK--IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWE-------------- 360
F+D T+ I E + R Y G Y ++A ++ + A +
Sbjct: 498 QFVDNTVTECWIFEGNGKIGR-YVGGYHDARQQQAQYLALKQPAVKKKEEAAAPKAETVK 556
Query: 361 --------KQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
K QRE+EQ L+ L E ++E LQ +
Sbjct: 557 RSSKKLSYKLQRELEQLPQLLEDL------------EAEIEALQAQ 590
|
Length = 635 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 61/212 (28%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+++ G + +++ + GE + L G NG+GKTT LR+IAG P +G + +
Sbjct: 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65
Query: 161 MKIAFLSQEFEVS--------MSR--TVRE--EFMSAFKEEMEIAGKLERVQKALESAVD 208
E M TV E EF +AF G+ + ALE
Sbjct: 66 ---IDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL-----GGEELDIAAALE---- 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
AV L L S+G + R+
Sbjct: 114 --------------------AVGLAPL-----------------AHLPFGYLSAGQKRRV 136
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
+L ++L+ + + +LDEPT LD +
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 2e-12
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 44/179 (24%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
S + +NL Y+ R + N +L + GE ++GPNG GK+T +I+GL +P G++
Sbjct: 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI 61
Query: 482 LLGEHNV--LPNY----------------F-----EQNQAEALDL---DKTVLETVAEAA 515
LL + ++ LP + F E N L++ D E E
Sbjct: 62 LLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELD 121
Query: 516 ---EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEP 570
E++ I ++ D K LSGGE+ R+ P +L LDEP
Sbjct: 122 ALLEEFHITHLR-------------DSKAYSLSGGERRRVEIARALAANPKFIL-LDEP 166
|
Length = 243 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 58/251 (23%), Positives = 98/251 (39%), Gaps = 61/251 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+S S G +L V+ +++ GE + ++G NGAGK+T L+ ++G+ PDSG V
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES- 205
+ + + A L Q ++ TV+E ++ R+
Sbjct: 62 GVPLNSWPPEELARHR-AVLPQNSSLAFPFTVQEVV------------QMGRIPHRSGRE 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+D + + L DL G R + S G Q
Sbjct: 109 PEEDERIAAQALAATDL-----------------------SGLAG----RDYRTLSGGEQ 141
Query: 266 MRMSLGKILLQ------DPDLLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHDR 316
R+ L ++L Q L LDEPT+ LD+ L L ++ ++ + HD
Sbjct: 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDL 201
Query: 317 AFLDQLCTKIV 327
Q +IV
Sbjct: 202 NLAAQYADRIV 212
|
Length = 259 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 2e-12
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 53/227 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+ +++K + L+ E+ +GE +G+VG NG GKTT +++AG +PD G V
Sbjct: 341 VEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--- 396
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+KI++ Q + TV E+ L + L S+ +++ L
Sbjct: 397 DPELKISYKPQYIKPDYDGTV-EDL-------------LRSITDDLGSSYYKSEIIKPL- 441
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L+ +L+ D+ V S G R+++ L +D
Sbjct: 442 -------------QLE-------RLL----------DKNVKDLSGGELQRVAIAACLSRD 471
Query: 278 PDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
DL LLDEP+ HLD L + + +++ +++ HD +D
Sbjct: 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518
|
Length = 590 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 50/211 (23%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV----- 154
+ I K++ GV L D++++ + G+ L+G NGAGK+T L+I++G +PD+G++
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
A +A + QE + TV E
Sbjct: 67 EMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY------------------------- 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMR 267
+G+L + ++ R+ L+ + + + LG D D + S G QM
Sbjct: 102 ----LGQLPHKGGIVNRR-------LLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQM- 148
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+ + K L ++ ++ DEPT+ L IE L
Sbjct: 149 VEIAKALARNARVIAFDEPTSSLSAREIEQL 179
|
Length = 501 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 51/206 (24%), Positives = 92/206 (44%), Gaps = 36/206 (17%)
Query: 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ ++++ F Y D + ++ GE AI+G NG GKSTL KL+ GL P G
Sbjct: 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK----------------TVLETVAEAAE------D 517
+ +G ++ D+ + TV + VA E +
Sbjct: 63 TITVGG-------MVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPRE 115
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++ + L + + D L+R+ LSGG+K R+A + +++LDE T+ LD
Sbjct: 116 EMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPR 174
Query: 578 SKEMLEEAISEYKG----TVITVSHD 599
+ + E + + K TV++++HD
Sbjct: 175 GRREVLETVRQLKEQKGITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 2e-12
Identities = 48/196 (24%), Positives = 94/196 (47%), Gaps = 23/196 (11%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +++ F Y + ++ + +L I+ GE I+G +G GKSTL KLI P G VL
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 483 LGEHN---VLPNYFEQNQA----EALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNF 532
+ H+ P + + E + ++++ + +A R+ + L G +F
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 533 KADM-------LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE- 584
+++ + + + LSGG++ R+A + ++ +L+ DE T+ LD S+ +
Sbjct: 121 ISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRN 180
Query: 585 --AISEYKGTVITVSH 598
I + TVI ++H
Sbjct: 181 MHDICAGR-TVIIIAH 195
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 3e-12
Identities = 48/163 (29%), Positives = 77/163 (47%), Gaps = 20/163 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL Y R + N +L++++GE ++GPNG GK+T +I+GL KP G++LL
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 485 EHNV--LP---------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLL 527
++ LP Y Q + L TV E + E R + ++ LL
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKL--TVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ + K S LSGGE+ R+ + + L+LDEP
Sbjct: 119 EEFHITH-LRKSKASSLSGGERRRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 56/214 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+S T+ D+++ + GE + + G NGAGKTT LRI+AG PD+G V
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 158 KSNMK---------IAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESA 206
++ + +L + + T E F F + A
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN--------AATIWEA 114
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + L G D V S+G Q
Sbjct: 115 LAQVGLAGLE-------------------------------------DLPVGQLSAGQQR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
R++L ++ L L +LDEP LD + + L
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171
|
Length = 209 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 49/230 (21%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN+S SY VLKD+++ ++ GEKV +VG +G+GK+T ++++ +P SG +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 155 -IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ +I +SQ+ + S T+RE
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLL-FSGTIRENI------------------------ 423
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+GR + ++ + N ++ L G+ G+R V + S G +
Sbjct: 424 -----ALGRPDATDEEIEEALKLANAHEF---IANL--PDGYDTIVGERGV-NLSGGQRQ 472
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
R+++ + LL++P +L+LDE T+ LD +T ++ L K + +II+H
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 3e-12
Identities = 43/183 (23%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQN----- 496
N + GE +GPNG GK+T ++++ L +P G + ++V+ P ++
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVP 72
Query: 497 QAEALDLDKTVLETVAEAAE-----DWRIDD-IKGLLGRCNFKADMLDRKVSLLSGGEKA 550
Q ++D D T E + ++ + LL + DR V SGG +
Sbjct: 73 QYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRR 131
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIV 607
RL ++ +L LDEPT LD ++ + + I K T++ +H ++
Sbjct: 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLC 191
Query: 608 NRV 610
+R+
Sbjct: 192 DRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 46/219 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-----KSNMKIAFLSQ--EFE 171
KGE +GL+G NGAGKTT LR I G P G V A K I ++ Q EF
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+V MS + G L R A +AV D L+R V
Sbjct: 62 WDFPISVAHTVMSGRTGHI---GWLRRPCVADFAAVRDA------------LRR----VG 102
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L L DR V S G + R+ + + L P +LLLDEP LD
Sbjct: 103 LTEL-----------------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
Query: 292 LDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
+ T E L L +++ +HD A C ++V
Sbjct: 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVV 184
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-12
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 49/220 (22%)
Query: 87 SNTGASSISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
+ + A++ + L N+S +Y VLK ++ ++K GEKV L+G G GK+T L+++
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
Query: 145 GQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
+P G ++ + I+ +SQ + S T+R+
Sbjct: 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDN------------- 433
Query: 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
+ A +A D+ L+ ++LQ+ V L+ L L LG +G
Sbjct: 434 ----LLLAAPNASDE-----ALI---EVLQQ----VGLEKLLEDDKGLNAWLG----EGG 473
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
R + S G Q R+ + + LL D LLLLDEPT LD +T
Sbjct: 474 RQL---SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
|
Length = 574 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 3e-12
Identities = 54/184 (29%), Positives = 83/184 (45%), Gaps = 38/184 (20%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG---------EVLLGEH---NVLPNYF 493
+ G+ T I+GPNG GK+T +K++ G P G EVL + L NYF
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVL--KRFRGTELQNYF 152
Query: 494 EQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
++ + V E + + E ++D++ LG N +LDR
Sbjct: 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLEN----ILDR 208
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA--ISEY--KGTVIT 595
+S LSGGE R+A +++ + DEPT++LDI ++ L A I E V+
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI--RQRLNVARLIRELAEGKYVLV 266
Query: 596 VSHD 599
V HD
Sbjct: 267 VEHD 270
|
Length = 590 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 3e-12
Identities = 61/210 (29%), Positives = 90/210 (42%), Gaps = 48/210 (22%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
NL I GE AIIGP+G GKSTLL+ I L +P G +LL ++ +
Sbjct: 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDI-------TKLRGKK 73
Query: 503 LDK------------------TVLETVAEAAEDWRIDDIKGLLGRCNFK----------- 533
L K TVLE V + LLGR F
Sbjct: 74 LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLG-YKPTWRSLLGR--FSEEDKERALSAL 130
Query: 534 -----ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EA 585
AD ++ LSGG++ R+A + + + L++ DEP LD SK++++ +
Sbjct: 131 ERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR 190
Query: 586 ISEYKG-TVITVSHDRYFVKQIVNRVVEVK 614
I++ G TVI H K+ +R+V +K
Sbjct: 191 INKEDGITVIINLHQVDLAKKYADRIVGLK 220
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 3e-12
Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 22/200 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++++ L+F E + LF+ ++T T I G NGCGKS+LL++I G+ +P G +
Sbjct: 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59
Query: 484 GEHNVLPN--------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN-FK- 533
N N Y N L L+ TV E + +E + + + L + FK
Sbjct: 60 --KNCNINNIAKPYCTYIGHNL--GLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKL 113
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYK 590
D+LD K LS G + +A + + S L +LDE +L ++++L I +
Sbjct: 114 HDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSG 173
Query: 591 GTVITVSHDRYFVK--QIVN 608
G V+ SH +K QI+
Sbjct: 174 GIVLLSSHLESSIKSAQILQ 193
|
Length = 195 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 3e-12
Identities = 58/203 (28%), Positives = 91/203 (44%), Gaps = 38/203 (18%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA------ 500
I GE AI+G +G GKSTLL L+ GL+ P G+V+ + +AE
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF-NGQPMSKLSSAAKAELRNQKLG 90
Query: 501 -------LDLDKTVLETVA----------EAAEDWRIDDIK--GLLGRCNFKADMLDRKV 541
L D T LE VA ++ + GL R N +
Sbjct: 91 FIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRP------- 143
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTV-ITVS 597
S LSGGE+ R+A + +V L++ DEPT +LD + + + + + E +GT + V+
Sbjct: 144 SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203
Query: 598 HDRYFVKQIVNRVVEVKGSNLQD 620
HD K++ +R +E++ L
Sbjct: 204 HDLQLAKRM-SRQLEMRDGRLTA 225
|
Length = 233 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 3e-12
Identities = 47/199 (23%), Positives = 80/199 (40%), Gaps = 30/199 (15%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ Y + + +I+ GEK I+G G GKS+LL + L + G +L
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ ++ P F LD E W+ + G
Sbjct: 63 IDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDP-----FGEYSDEELWQALERVG 117
Query: 526 LLGRCNFKADMLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
L LD V LS G++ L + +++ S +LVLDE T +D + +
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 582 LEEAI-SEYKG-TVITVSH 598
+++ I +K TV+T++H
Sbjct: 178 IQKTIREAFKDCTVLTIAH 196
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 65/217 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDS 151
++ +N+S Y+ VLK++++ +K GEKVG+VG G+GK++ R++ E S
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSS 58
Query: 152 GNVI------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLE 197
G+++ +S +I+ + Q+ V S T+R + F E + E+ LE
Sbjct: 59 GSILIDGVDISKIGLHDLRS--RISIIPQD-PVLFSGTIRSN-LDPFGEYSDEELWQALE 114
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV L+ V+ + LD V + G+
Sbjct: 115 RVG--LKEFVESL---------------------PGGLDTVV----------EEGGE--- 138
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + + L + LL+ +L+LDE T +D +T
Sbjct: 139 -NLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 4e-12
Identities = 65/221 (29%), Positives = 92/221 (41%), Gaps = 52/221 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG----LEKPRG- 478
++T +L R + +L IE G TA++G NG GKSTLLK + G PRG
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 479 ---GEVLL-GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR----- 529
G+V L GE P A L + VL A+ A + +I LLGR
Sbjct: 61 RVTGDVTLNGE----P--LAAIDAPRLARLRAVLPQAAQPAFAFSAREIV-LLGRYPHAR 113
Query: 530 -----------------CNFKADMLD-RKVSLLSGGEKARLAFCKFMVK---------PS 562
A L R V+ LSGGE AR+ F + + + P
Sbjct: 114 RAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPP 173
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
L+LDEPT LD+ + L + + ++ V+ + HD
Sbjct: 174 RYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD 214
|
Length = 272 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-12
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVII 312
V S G + R++L + LL +PDLLLLDEPT+ LD + E L L ++ ++I+
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 313 SHDRAFLDQLCTKIV 327
+HD + +++
Sbjct: 137 THDPELAELAADRVI 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 5e-12
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 35/244 (14%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P +G++
Sbjct: 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR----- 64
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLL 217
++ E E+ + R + A K +L+R++ L +L M L
Sbjct: 65 -----VNGE-EIRLKRDKDGQLKPADKR------QLQRLRTRLGMVFQHFNLWSHMTVLE 112
Query: 218 DEFD-----LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ + L KA+A+ + K + ++G A+ D A S G Q R+++ +
Sbjct: 113 NVIEAPVHVLGVSKAEAI------ERAEKYLAKVGI-AEKADAYPAHLSGGQQQRVAIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L +P+++L DEPT+ LD + + E L+ L ++ MV+++H+ F + + ++
Sbjct: 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL 225
Query: 330 EMGV 333
G
Sbjct: 226 HQGK 229
|
Length = 256 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 5e-12
Identities = 62/214 (28%), Positives = 105/214 (49%), Gaps = 33/214 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ KN+ + + + +L I++GE IIGP+G GKSTLL+ I LE+ G++++
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 484 GEHNVL-PNYFEQN-QAEA--------LDLDKTVLETVA-----------EAAEDWRIDD 522
V P E+ + EA L T LE V E AE +
Sbjct: 61 DGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARE- 119
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPS--K 579
LL + S LSGG++ R+A + + VKP L++ DEPT+ LD P
Sbjct: 120 ---LLAKVGLAERA-HHYPSELSGGQQQRVAIARALAVKPK-LMLFDEPTSALD-PELRH 173
Query: 580 EMLE--EAISEYKGTVITVSHDRYFVKQIVNRVV 611
E+L+ + ++E T++ V+H+ F +++ +R++
Sbjct: 174 EVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLI 207
|
Length = 240 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 6e-12
Identities = 60/229 (26%), Positives = 97/229 (42%), Gaps = 45/229 (19%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
E R L N +L I G+ +IG NG GKSTLL I G KP G++L+ +V
Sbjct: 15 TPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73
Query: 489 --------LPNYFEQNQAEALDLDKTVLETVAEAA----------------EDWRIDDIK 524
L F Q+ + T+ E +A A + +
Sbjct: 74 SVAKRANLLARVF-QDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLA 132
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML- 582
L LG N L ++ LLSGG++ L+ + P +L+LDE T LD + E +
Sbjct: 133 RLGLGLEN----RLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVM 188
Query: 583 ---EEAISEYKGTVITVSHDRYFVKQIV---NRVVEVKGSN-LQDYAGD 624
+ + E+K T + V+H+ ++ + NR++ + + D G+
Sbjct: 189 ELTAKIVEEHKLTTLMVTHN---MEDALDYGNRLIMLHSGKIVLDVTGE 234
|
Length = 263 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 6e-12
Identities = 51/201 (25%), Positives = 86/201 (42%), Gaps = 27/201 (13%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
+L++ GE + GP+G GKSTLL+ + P G++L+ + E
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPRE 86
Query: 500 ALDLDKTV----------------LETVAEAAED--WRIDD----IKGLLGRCNFKADML 537
L++ +T L+ VAE + LL R N +
Sbjct: 87 VLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLW 146
Query: 538 DRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GT-V 593
+ SGGE+ R+ + F+V LL LDEPT LD ++ ++ E I E K G +
Sbjct: 147 SLAPATFSGGEQQRVNIARGFIVDYPILL-LDEPTASLDATNRAVVVELIREAKARGAAL 205
Query: 594 ITVSHDRYFVKQIVNRVVEVK 614
+ + HD + + +R+++V
Sbjct: 206 VGIFHDEEVREAVADRLLDVS 226
|
Length = 235 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 7e-12
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +++K Y L +V++E +KG VG +G NGAGK+T ++II G PDSG+V
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
L EV + E + +M V++ L+ + G+LL
Sbjct: 62 ---CGEDVLQNPKEVQRNIGYLPEHNPLY-LDM-------YVREYLQFIAGIYGMKGQLL 110
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR + + L L + K + +L S G++ R+ L + L+ D
Sbjct: 111 K-----QRVEEMIELVGLRPEQHKKIGQL--------------SKGYRQRVGLAQALIHD 151
Query: 278 PDLLLLDEPTNHLD 291
P +L+LDEPT LD
Sbjct: 152 PKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 59/229 (25%), Positives = 90/229 (39%), Gaps = 73/229 (31%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--- 492
L N NL + E ++IGPNG GK+T+ + G KP GG +LL ++ LP +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 493 --------------------------------------------FEQNQAEALDLDKTVL 508
F + ++EALD T L
Sbjct: 79 RMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWL 138
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E V GLL + +R+ L+ G++ RL + MV +L+LD
Sbjct: 139 ERV-------------GLL-------EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLD 178
Query: 569 EPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEV 613
EP L+ + L+E I+ E+ TV+ + HD V I +R+ V
Sbjct: 179 EPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVV 227
|
Length = 255 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 8e-12
Identities = 67/242 (27%), Positives = 110/242 (45%), Gaps = 55/242 (22%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEK 475
SG +V+ ++L Y D + ++ I + TA+IGP+GCGKST L+ I M ++
Sbjct: 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDA 94
Query: 476 PR-GGEVLLGEHNVL-------------------PNYFEQN-----------QAEALDLD 504
R GE+ NV PN F ++ Q D+D
Sbjct: 95 ARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDID 154
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+ V E++ AA W D++K D LD LSGG++ RL + + +
Sbjct: 155 ERVEESLRRAAL-W--DEVK----------DQLDSSGLDLSGGQQQRLCIARAIAPDPEV 201
Query: 565 LVLDEPTNHLD--IPSK--EMLEEAISEYKGTVITVSHDRYFVKQIVNRV-VEVKGSNLQ 619
+++DEP + LD SK +++EE EY TV+ V+H+ +I ++ V + G L
Sbjct: 202 ILMDEPASALDPVATSKIEDLIEELAEEY--TVVIVTHNMQQAARISDKTAVFLTGGELV 259
Query: 620 DY 621
++
Sbjct: 260 EF 261
|
Length = 285 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 9e-12
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 88 NTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
N SS+S V+L ISKS+ G V+ ++ + GE + L+G +G GKTT LR+IAG E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 148 EPDSGNVI 155
PDSG ++
Sbjct: 65 TPDSGRIM 72
|
Length = 375 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-12
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 98 VKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150
+++E++SK++ + VLK+V+ V GE V L G +GAGK+T L+ + PD
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 151 SGNVIKAKSNMKIAFLSQ--EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
SG I + L+Q EV R ++S F + RV ALE +
Sbjct: 62 SGR-ILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR------VIPRVS-ALEVVAE 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ G + R + + + ++ L P A+FS G Q R+
Sbjct: 114 PLLERGVPREA--ARARARELLARLNIPERLWHLPP-------------ATFSGGEQQRV 158
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
++ + + D +LLLDEPT LD +E + + ++ I HD + +
Sbjct: 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAE-AKARGAALIGIFHDEEVRELVAD 217
Query: 325 KIVE 328
++++
Sbjct: 218 RVMD 221
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 1e-11
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDR 316
S G + R++L + LL DP+LL+LDEPT+ LD ++ L K+ +++ SH
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 317 AFLDQLCTKIV 327
++LC ++
Sbjct: 156 EEAERLCDRVA 166
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 67/230 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
+++++ S G +LK V +KKGE L+G NG+GK+T + I G E G
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG---- 57
Query: 157 AKSNMKIAFLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+I F ++ ++ R AF+ EI G V + D + R
Sbjct: 58 -----EILFKGEDITDLPPEERARLGIFLAFQYPPEIPG------------VKNADFL-R 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++E FS G + R + ++LL
Sbjct: 100 YVNE---------------------------------------GFSGGEKKRNEILQLLL 120
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQL 322
+PDL +LDEP + LD+D + + L ++ ++II+H + LD +
Sbjct: 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYI 170
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 39/201 (19%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +S Y L DV++ V+ G V L+G NGAGK+T ++ G +
Sbjct: 1 ALEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-- 58
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL--MG 214
+A + R R L R+ + D+DL
Sbjct: 59 -----SVA------GHDLRRAPRA--------------ALARLGVVFQQPTLDLDLSVRQ 93
Query: 215 RLLDEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
L L L R + L A+ LG D+ V + G + R+ + +
Sbjct: 94 NLRYHAALHGLSRAEARARIAELLAR-------LGLAERADDK-VRELNGGHRRRVEIAR 145
Query: 273 ILLQDPDLLLLDEPTNHLDLD 293
LL P LLLLDEPT LD
Sbjct: 146 ALLHRPALLLLDEPTVGLDPA 166
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 1e-11
Identities = 50/206 (24%), Positives = 87/206 (42%), Gaps = 42/206 (20%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L + D + + +L++ G ++GPNG GK+TLL+ I G P G VL+
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 485 EHNV--------------LPNYFEQNQAEALDLDKTVLETV-------------AEAAED 517
+V +P Q +L + V + V +
Sbjct: 64 GDDVEALSARAASRRVASVP------QDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDR 117
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
++ G F DR V+ LSGGE+ R+ + + + + +L+LDEPT LDI
Sbjct: 118 AAVERAMERTGVAQF----ADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDIN 173
Query: 578 SK----EMLEEAISEYKGTVITVSHD 599
+ E++ + + K T + HD
Sbjct: 174 HQVRTLELVRRLVDDGK-TAVAAIHD 198
|
Length = 402 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 55/201 (27%), Positives = 91/201 (45%), Gaps = 32/201 (15%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ Y + N NL I +GE +IGP+G GK+T +K+I L +P GE+ +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 484 GEHNVLPNYFEQN------------QAEALDLDKTVLETVA---------EAAEDWRIDD 522
++ EQ+ Q L TV E +A + R D+
Sbjct: 61 DGEDIR----EQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ L+G A+ DR LSGG++ R+ + + LL++DEP LD +++ L
Sbjct: 117 LLALVGLD--PAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174
Query: 583 EEAI----SEYKGTVITVSHD 599
+E E T++ V+HD
Sbjct: 175 QEEFKRLQQELGKTIVFVTHD 195
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 1e-11
Identities = 60/211 (28%), Positives = 90/211 (42%), Gaps = 52/211 (24%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---GEVL 482
+++ F Y D ++ IE A IGP+GCGKST L+L M P GE+
Sbjct: 7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIR 66
Query: 483 LGEHNVL-------------------PNYFE----QNQAEALDLD---------KTVLET 510
+ N+ PN F +N A L ++ + V ET
Sbjct: 67 IDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEET 126
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ AA W D++K D L LSGG++ RL + M ++L++DEP
Sbjct: 127 LKGAAL-W--DEVK----------DKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+ LD S +EE I E K T++ V+H+
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.3 bits (161), Expect = 1e-11
Identities = 64/244 (26%), Positives = 116/244 (47%), Gaps = 28/244 (11%)
Query: 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANLTIERGEKT 453
Q++ ++++ +K+ ++ + + +V I+N F Y +R + + NL I+R + T
Sbjct: 52 QKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVT 111
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL---------- 503
A IGP+GCGKST L+ + L G GE L + +L+L
Sbjct: 112 AFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQK 171
Query: 504 ----DKTVLETVAEAAEDWRIDDIKGL--LGRCNFKA--------DMLDRKVSLLSGGEK 549
+ ++ + VA + I+D K L + + K+ D LD+ + LSGG++
Sbjct: 172 PTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIV 607
RL + + +L++DEPT+ LD + +EE I E K ++I V+H ++I
Sbjct: 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRIS 291
Query: 608 NRVV 611
+ V
Sbjct: 292 DETV 295
|
Length = 329 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 1e-11
Identities = 64/215 (29%), Positives = 94/215 (43%), Gaps = 53/215 (24%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---G 479
+ +K+L Y NL IE TA IGP+GCGKST+L+ + M P G
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 480 EVLLGEHNVL-------------------PNYF-----EQNQAEALDLD----KTVLETV 511
EVLL ++ PN F N L L+ K L+ +
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E A W +++K D LD+ LSGG++ RL + + V+P LL
Sbjct: 125 VEKSLRGANLW--NEVK----------DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLL- 171
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD S +E+ I+E K T++ V+H+
Sbjct: 172 MDEPCSALDPISTLAIEDLINELKQDYTIVIVTHN 206
|
Length = 258 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 1e-11
Identities = 71/260 (27%), Positives = 109/260 (41%), Gaps = 56/260 (21%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK------------ 468
+ ++T ++ Y +L + E TA+IGP+GCGKST L+
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGV 61
Query: 469 LIMGLEKPRGGEVLLGEHNVL------------PNYFE----QNQAEALDL----DKTVL 508
I G RG + +V+ PN F +N L L DK VL
Sbjct: 62 TITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVL 121
Query: 509 ----ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPST 563
ET + A W D++K D L LSGG++ R+ + + VKP
Sbjct: 122 DEAVETSLKQAAIW--DEVK----------DHLHESALSLSGGQQQRVCIARVLAVKPDV 169
Query: 564 LLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621
+L LDEPT+ LD S +E + E + T+I V+H + +I ++ NL ++
Sbjct: 170 IL-LDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEF 228
Query: 622 AGDYNYYLEKNLDAREKELE 641
A + L+ +EKE E
Sbjct: 229 ADTKQMF----LNPKEKETE 244
|
Length = 252 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-11
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 68/245 (27%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++ G E I K + DV+ +V++GE ++G++G+GK+T LR I EP SG
Sbjct: 21 LAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
Query: 154 VI---KAKSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
V+ + + M KI+ + Q F + RTV E AF +E+ G + E
Sbjct: 81 VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN--VAFG--LEVQGVPRAE 136
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E+ ++L+G L +
Sbjct: 137 REERAAEA----LELVG-------------------------------LE---GWEHKYP 158
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+ L + L DPD+LL+DE + LD D + L+ L K +V
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT---IV 215
Query: 311 IISHD 315
I+HD
Sbjct: 216 FITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 52/232 (22%), Positives = 111/232 (47%), Gaps = 51/232 (21%)
Query: 98 VKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VK +N++ +Y VL+DV++ + GE LVG +G+GK+T + ++ +P G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 155 I---KAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K S + K++ + QE V +R++++ IA L+
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQE-PVLFARSLQD----------NIAYGLQSC----- 115
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
F+ ++ AQ + + +S+L G+ + G++ + S G
Sbjct: 116 --------------SFECVKEAAQKAHAHSF---ISEL--ASGYDTEVGEK-GSQLSGGQ 155
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG--YLGKQDVPMVIISH 314
+ R+++ + L+++P +L+LDE T+ LD ++ + ++ Y + +++I+H
Sbjct: 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 64.1 bits (157), Expect = 2e-11
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 61/204 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++ N++ Y +L+ V+ EV KGE ++G NG GKTT L+ + G SG++
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 156 ----KAKSNMK----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + + IA++ Q E+ TV E ++ +
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA-----------ALPRRSRKI 110
Query: 208 DDMDLMGRLLDEF----DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + + F ++L R+ GD S G
Sbjct: 111 PD-----EIYELFPVLKEMLGRRG-------------------------GD-----LSGG 135
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++++ + L+ P LLLLDEPT
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 59/199 (29%), Positives = 88/199 (44%), Gaps = 37/199 (18%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---- 496
N +L I G+ A++GP+G GK+TLL++I GLE G + +V +
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGF 78
Query: 497 --QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV------------- 541
Q AL TV + +A + L R A + KV
Sbjct: 79 VFQHYALFRHMTVFDNIAFG--------LTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA 130
Query: 542 ----SLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIP-SKEM---LEEAISEYKGT 592
+ LSGG+K R+A + + V+P LL LDEP LD KE+ L + E K T
Sbjct: 131 DRYPAQLSGGQKQRVALARALAVEPQILL-LDEPFGALDAQVRKELRRWLRQLHEELKFT 189
Query: 593 VITVSHDRYFVKQIVNRVV 611
+ V+HD+ ++ +RVV
Sbjct: 190 SVFVTHDQEEAMEVADRVV 208
|
Length = 353 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 2e-11
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 39/207 (18%)
Query: 425 VTIKNLEFGY------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ ++N+ + Y E R LF+ NLTIE G TA IG G GKST+++L+ GL P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 479 GEVLLGEHNV-----------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
G V + + + L F ++Q ++TVL+ VA +++ +
Sbjct: 62 GSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQL----FEETVLKDVAFGPQNFGVS 117
Query: 522 DIKGL------LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ L + ++ LSGG+ R+A + +LVLDEPT LD
Sbjct: 118 QEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLD 177
Query: 576 IPS--KEMLE--EAISEYKGTVITVSH 598
P KE++ + + + T++ V+H
Sbjct: 178 -PKGRKELMTLFKKLHQSGMTIVLVTH 203
|
Length = 280 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 2e-11
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 65/249 (26%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + K + L +V+ V G+ G++G +GAGK+T +R + E P SG+
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 154 VI---------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198
VI KA+ + + F Q F + SRTV +A LE
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIF--QHFNLLSSRTVFG----------NVALPLE- 108
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
L + D + KV++L+ +G D D +
Sbjct: 109 ------------------------LDNTPK----DEIKRKVTELLALVGLG-DKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD T +E L+ + + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 315 DRAFLDQLC 323
+ + ++C
Sbjct: 200 EMDVVKRIC 208
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-11
Identities = 66/213 (30%), Positives = 93/213 (43%), Gaps = 56/213 (26%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
+ L F Y D + +L E+ + TA+IGP+GCGKST L+ LI G GE
Sbjct: 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVE--GE 67
Query: 481 VLLGEHNVL-------------------PNYFE----QNQAEALDL----DKTVLETVAE 513
+LL N+ PN F +N A L + DK L E
Sbjct: 68 ILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVE 127
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLD 568
A W D++K D L LSGG++ RL + + V+P LL +D
Sbjct: 128 RSLRHAALW--DEVK----------DRLHESALGLSGGQQQRLCIARALAVEPEVLL-MD 174
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
EP + LD + + +EE I E K T+I V+H+
Sbjct: 175 EPASALDPIATQKIEELIHELKARYTIIIVTHN 207
|
Length = 253 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 3e-11
Identities = 63/213 (29%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +++L F Y+D +A +L+I G KTA++GPNG GKSTLL + G+ P+ G
Sbjct: 4 IIEVEDLHFRYKDG---TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60
Query: 480 EV-LLGEHNVLPNYFEQNQAEAL---DLD-----KTVLETVAEAAEDWRIDDIKGLLGRC 530
V ++G N L D D TV + VA + +D + R
Sbjct: 61 RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDK-DEVERRV 119
Query: 531 N--FKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
KA D D+ LS G+K R+A + ++VLDEP +LD +E L E
Sbjct: 120 EEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLME 179
Query: 585 AISEYKG---TVITVSHDRYFVKQIVNRVVEVK 614
+ TVI +HD + ++V+ +K
Sbjct: 180 ILDRLHNQGKTVIVATHDVDLAAEWADQVIVLK 212
|
Length = 274 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-11
Identities = 55/203 (27%), Positives = 91/203 (44%), Gaps = 28/203 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEV 481
+++IK+L ED+ + NL + GE AI+GPNG GKSTL + G E + GG V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 482 LLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWR---------- 519
++L E E + + ++ L+T A +R
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
D ++ + D+L R V++ SGGEK R + V L +LDE + LDI +
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDA 180
Query: 579 KEMLEEAISEY---KGTVITVSH 598
+++ + ++ K + I V+H
Sbjct: 181 LKIVADGVNSLRDGKRSFIIVTH 203
|
Length = 248 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 65.6 bits (160), Expect = 4e-11
Identities = 62/286 (21%), Positives = 118/286 (41%), Gaps = 57/286 (19%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVL 482
+ +KNL ++ + + + TIE GE I+G +G GKS L+ ++ G++ +P G ++
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 483 -----------------LGEH-NVLPNYFEQNQAEALDLDKTVL------------ETVA 512
+GE V E + + +L + T A
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFA 120
Query: 513 EAAEDWRIDDIKGLLGRCNFKA-DMLDRKVSL----------------LSGGEKARLAFC 555
+D +D++ L ++ + + R V L LSGGEK R+
Sbjct: 121 LYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180
Query: 556 KFMVKPSTLLVLDEPTNHLDIPS----KEMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+ + K L + DEPT LD + LEEA+ +++ SH ++ + ++ +
Sbjct: 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAI 240
Query: 612 EV-KGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKIKAK 656
+ G ++ G + + ++ E+E+E E+E P IK +
Sbjct: 241 WLENGEIKEE--GTPDEVVAVFMEG-VSEVEKECEVEVGEPIIKVR 283
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+K EN+ K Y+ VLK V+ + KGE V +VG +G+GK+T L ++ G + P SG
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESA 206
V+ F Q +S R + F+ F + LE V
Sbjct: 62 VL---------FNGQSLS-KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV------- 104
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDT---LDAKVSKLMPELGFTADDGDRLVASFSSG 263
M L+ + + + K +A + L+ +++ EL S G
Sbjct: 105 -----AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL--------------SGG 145
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318
+ R+++ + L+ P L+L DEPT +LD + + + + + + ++++HD
Sbjct: 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 5e-11
Identities = 61/242 (25%), Positives = 107/242 (44%), Gaps = 28/242 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L Y + + + ++G +GPNG GKST +K+I G P G V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 485 EHNVLPNYFEQNQA-------EALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL N E + L LD V E + A + + ++ ++
Sbjct: 63 GEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVG 122
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM----LEEAIS 587
+ + +K+ LS G + R+ + ++ +L+LDEPT LD P++ + + + I
Sbjct: 123 LRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD-PNQLVEIRNVIKNIG 180
Query: 588 EYKGTVITVSHDRYFVKQIVNRVVEV-KGSNLQDYAGDYNYYLEKNLDAREKELEREAEL 646
+ K T+I +H V+ I +RV+ + KG + D D L A K+ E E
Sbjct: 181 KDK-TIILSTHIMQEVEAICDRVIIINKGKIVADKKLD-------ELSAANKKQVIEVEF 232
Query: 647 EE 648
EE
Sbjct: 233 EE 234
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (154), Expect = 5e-11
Identities = 57/205 (27%), Positives = 88/205 (42%), Gaps = 27/205 (13%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL------ 482
+L F Y+D + NL T ++G NGCGKSTL + GL +P+ G VL
Sbjct: 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 483 -------LGEHNVLPNYFE--QNQAEALDLDKTVLET-----VAEAAEDWRIDDIKGLLG 528
L + F+ + Q D+D + + V EA R+D+ L+
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+F+ + + LS G+K R+A +V + L+LDEPT LD + + I
Sbjct: 126 AQHFR----HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRR 181
Query: 589 YKGT---VITVSHDRYFVKQIVNRV 610
VI SHD + +I + V
Sbjct: 182 IVAQGNHVIISSHDIDLIYEISDAV 206
|
Length = 271 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 5e-11
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---QAEA 500
NLT+E GE ++GP+GCGK+TLL LI G + G + L V E+ Q E
Sbjct: 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL----------LSGGEKA 550
L + V + VA + ++ ++ R ML +KV L LSGG++
Sbjct: 81 LLPWRNVQDNVAFGLQLAGVEKMQ----RLEIAHQML-KKVGLEGAEKRYIWQLSGGQRQ 135
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHD 599
R+ + + LL+LDEP LD ++E ++ + E V+ ++HD
Sbjct: 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHD 188
|
Length = 255 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 5e-11
Identities = 53/188 (28%), Positives = 87/188 (46%), Gaps = 24/188 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L I +G+ I+G NGCGKSTL KL GL P+ GE+LL V ++ + DL
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS----ADSRDDYRDL 417
Query: 504 DKTVLETV--------AEAAEDWRIDDIKGLLGRCNF--KADMLDRKVSL---LSGGEKA 550
+ + E +D+ + L R K + D S LS G++
Sbjct: 418 FSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQK 477
Query: 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML-EEAISEYK---GTVITVSH-DRYFVKQ 605
RLA ++ +L+ DE D K EE + + K T+I +SH D+YF +
Sbjct: 478 RLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF--E 535
Query: 606 IVNRVVEV 613
+ ++++++
Sbjct: 536 LADQIIKL 543
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 5e-11
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 48/220 (21%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
E K N + SS + + N+ G VLK++ +++KGE + + G G+GK
Sbjct: 21 LEKAKQENN--DRKHSSDDNNLFFSNLC--LVGAPVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
T+ L +I G+ EP G K K + +I+F SQ F M T++E
Sbjct: 77 TSLLMLILGELEPSEG---KIKHSGRISFSSQ-FSWIMPGTIKENI-------------- 118
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGD 254
+ G DE+ R V L+ ++K PE T + G
Sbjct: 119 ---------------IFGVSYDEY----RYKSVVKACQLEEDITKF-PEKDNTVLGEGGI 158
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G + R+SL + + +D DL LLD P +LD+ T
Sbjct: 159 TL----SGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 5e-11
Identities = 50/211 (23%), Positives = 91/211 (43%), Gaps = 43/211 (20%)
Query: 420 SGRSVVTI--KNLE-FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+ VTI ++LE + + L N T+ G++ A++GP+G GK++LL ++G
Sbjct: 343 ASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY 402
Query: 477 RGGEVLLGEHNVLPNYFEQNQAEALDLDK-----------------TVLETVAEAAEDWR 519
+G ++ N E + LD + T+ + V D
Sbjct: 403 QG--------SLKINGIELRE---LDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDAS 451
Query: 520 IDDIKGLLGRCNFK------ADMLDRKVS----LLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ ++ L LD + LS G+ RLA + +++P LL+LDE
Sbjct: 452 DEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDE 511
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
PT LD S++++ +A++ T + V+H
Sbjct: 512 PTASLDAHSEQLVMQALNAASRRQTTLMVTH 542
|
Length = 588 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 6e-11
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 52/213 (24%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E+ GE +G++G NG GKTT ++++AG +PD G+ K + K ++S +++ TV
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDG----TV 418
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+ SA + A S+ +++ L NL+
Sbjct: 419 EDLLRSAIRS-------------AFGSSYFKTEIVKPL--------------NLE----- 446
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD----T 294
L+ +R V S G R+++ L ++ DL LLDEP+ +LD++
Sbjct: 447 --DLL----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+ + ++ + +++ HD +D + +++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
|
Length = 591 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 6e-11
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 50/196 (25%)
Query: 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVI-------KA 157
K +L DV+ V+ G+ + ++G +G+GKTT L I+G+ E SG ++
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ +A++ Q+ + TVRE + + + + R
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILR-------------------------LPR 112
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ +R + D ++ G LV S G + R+S+ LL
Sbjct: 113 KSSDAIRKKRVEDVLLRDLALTRI-------------GGNLVKGISGGERRRVSIAVQLL 159
Query: 276 QDPDLLLLDEPTNHLD 291
DP +L+LDEPT+ LD
Sbjct: 160 WDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 7e-11
Identities = 52/193 (26%), Positives = 89/193 (46%), Gaps = 47/193 (24%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
N A+L +E GE I+G +G GKSTL++L+ L +P GE+L+ ++ + AE
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK----LSAAEL 100
Query: 501 LDL----------------DKTVLETVA--------------EAAEDWRIDDIKGLLGRC 530
+L +TVLE VA E A + ++ GL G
Sbjct: 101 RELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEAL--ELVGLEGYA 158
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAI--- 586
D+ + LSGG + R+ + + +L++DE + LD + EM +E +
Sbjct: 159 -------DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQ 211
Query: 587 SEYKGTVITVSHD 599
++ K T++ ++HD
Sbjct: 212 AKLKKTIVFITHD 224
|
Length = 386 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 9e-11
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 46/173 (26%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ + E +G++G NG GKTT ++++AG +PD G++ +++ Q + TV
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE--IELDTVSYKPQYIKADYEGTV 78
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R+ S + ++ L +
Sbjct: 79 RDLLSS-------------ITKDFYTHPYFKTEIAKPL---------------------Q 104
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ +++ DR V S G R+++ L +D D+ LLDEP+ +LD
Sbjct: 105 IEQIL----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-10
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 65/230 (28%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK Y TVL + + G+ V +VG +G GK+T LR++AG E P +G +
Sbjct: 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL----- 69
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM---GRL 216
+AG L A +D LM RL
Sbjct: 70 --------------------------------LAG-----TAPLAEAREDTRLMFQDARL 92
Query: 217 L------DEFDL-LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L D L L+ + + L L A +G AD + A+ S G + R++
Sbjct: 93 LPWKKVIDNVGLGLKGQWRDAALQALAA--------VGL-ADRANEWPAALSGGQKQRVA 143
Query: 270 LGKILLQDPDLLLLDEPTNHLD-LDTIEW---LEGYLGKQDVPMVIISHD 315
L + L+ P LLLLDEP LD L IE +E + +++++HD
Sbjct: 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 1e-10
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 100 LENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++S SY K + L+DV+ + GE V ++G +G GKTT L +IAG P G++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I E V +++ + + +L ++KA
Sbjct: 66 --GRRIEGPGAERGVVFQNEALLPWLNV-IDNVAFGLQLRGIEKA--------------- 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR+ A +++ +G + + S G + R+ + + L +
Sbjct: 108 ------QRREIA----------HQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVE 150
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ---VLLITHD 192
|
Length = 259 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 1e-10
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 44/218 (20%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
FE K +NK + G+ N S VLK+++++++KG+ + + G G+GK
Sbjct: 410 FEKIKQNNK--ARKQPNGDDGLFFSNFS--LYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
++ L +I G+ EP G K K + +I+F Q M T+++
Sbjct: 466 SSLLMMIMGELEPSEG---KIKHSGRISFSPQ-TSWIMPGTIKDNI-------------- 507
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
+ G DE+ R + L+ ++ + +G
Sbjct: 508 ---------------IFGLSYDEY----RYTSVIKACQLEEDIALFPEKDKTVLGEGG-- 546
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + R+SL + + +D DL LLD P HLD+ T
Sbjct: 547 -ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 1e-10
Identities = 59/221 (26%), Positives = 95/221 (42%), Gaps = 55/221 (24%)
Query: 420 SGRSVV-TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIM 471
+ + VV +NL Y + NL I E TAIIGP+GCGKST +K L+
Sbjct: 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVP 78
Query: 472 GLEKPRGGEVLLGEHNVL-------------------PNYFEQNQAEALDL--------D 504
++ G++L + N+ PN F ++ + + D
Sbjct: 79 SVKT--TGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD 136
Query: 505 KTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560
K L+ + E A W D++K D L LSGG++ RL + +
Sbjct: 137 KKTLDEIVEKSLRGAAIW--DELK----------DRLHDNAYGLSGGQQQRLCIARCLAI 184
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++++DEPT+ LD S +EE + E K ++I V+H+
Sbjct: 185 EPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHN 225
|
Length = 271 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 1e-10
Identities = 65/214 (30%), Positives = 97/214 (45%), Gaps = 58/214 (27%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
KNL Y ++ N NL I + TA+IGP+GCGKST L+ LI ++ GE
Sbjct: 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE--GE 65
Query: 481 VLLGEHNVL-------------------PNYFEQNQAEAL-------------DLDKTVL 508
VLL N+ PN F + + + +LDK V
Sbjct: 66 VLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVE 125
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVL 567
+ +AA W D++K D L + LSGG++ RL + + VKP +L +
Sbjct: 126 WALKKAAL-W--DEVK----------DDLKKSALKLSGGQQQRLCIARTIAVKPDVIL-M 171
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
DEPT+ LD S +E+ + E K T++ V+H+
Sbjct: 172 DEPTSALDPISTLKIEDLMVELKKEYTIVIVTHN 205
|
Length = 251 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (150), Expect = 1e-10
Identities = 59/224 (26%), Positives = 105/224 (46%), Gaps = 32/224 (14%)
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G+S V I L D+ + + I I+GP+G GKSTLLK++ L +
Sbjct: 2 EAGKSAEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61
Query: 476 PRGGEVLLGEHNVLPNYFEQN--QAEALDLDK---------------TVLETVAEAAEDW 518
++ + + VL YF ++ Q +A+ L K ++ + +A +
Sbjct: 62 IYDSKIKV-DGKVL--YFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH 118
Query: 519 RIDD---IKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
I + IK ++ C K D L+ S LSGG++ RL + + +L++D
Sbjct: 119 GIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRV 610
EPT+ +DI + + +E+ I+E K ++ VSH+ V ++ + V
Sbjct: 179 EPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYV 222
|
Length = 257 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 27/200 (13%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++ L + Y D N+ I++GE TAI+G NG GKSTL + + G+ KP G +L
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 483 LGEHNVLPNY-----FEQNQAEAL---DLDK-----TVLETVAEAA------EDWRIDDI 523
+ +Y + ++ + D D +V + V+ A ED +
Sbjct: 65 FDGKPI--DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRV 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEML 582
L R + D+ LS G+K R+A +V +LVLDEPT LD + E++
Sbjct: 123 DNALKRTGI-EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIM 181
Query: 583 EEAISEYKG---TVITVSHD 599
+ + K T+I +HD
Sbjct: 182 KLLVEMQKELGLTIIIATHD 201
|
Length = 283 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 64.6 bits (157), Expect = 1e-10
Identities = 73/245 (29%), Positives = 111/245 (45%), Gaps = 29/245 (11%)
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGR-SVVTIKNLEFGY 434
LG S R A +K E L EE +E P + + F ER G V +KNL +
Sbjct: 881 LGGEGCSTREERALEKTEPLTEE--MEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIF 938
Query: 435 E--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNY 492
E R +R N+T + TA +G NG GK+T L ++ GL P G VL+G ++ N
Sbjct: 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNL 998
Query: 493 FEQNQAEALDLDKTVL---ETVAEAAEDWRIDDIKGLLGRCNFKAD-----MLD------ 538
Q+ + +L TVAE I L GR +A ML+
Sbjct: 999 DAVRQSLGMCPQHNILFHHLTVAE-----HILFYAQLKGRSWEEAQLEMEAMLEDTGLHH 1053
Query: 539 ---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TV 593
+ LSGG + +L+ V + ++VLDEPT+ +D S+ + + + +Y+ T+
Sbjct: 1054 KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTI 1113
Query: 594 ITVSH 598
I +H
Sbjct: 1114 IMSTH 1118
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 50/207 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN++ Y +L D++ + G+ L+G NG GK+T L+ A P SG V
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 155 ---IKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I S+ ++A L Q TVRE + A+ G+ +
Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRE--LVAY-------GRSPWL-------- 105
Query: 208 DDMDLMGRLLDEFD--LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L GRL E D + + + ++ L DR + S G +
Sbjct: 106 ---SLWGRLSAE-DNARVNQAMEQTRINHL-----------------ADRRLTDLSGGQR 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDL 292
R L +L QD ++LLDEPT +LD+
Sbjct: 145 QRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 72/261 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNM---------KIAFLSQEFEVSM---------SRTVREEFMSAFKEEMEIAGKLERV 199
++ I L + V M TV++ + A + G +
Sbjct: 63 GNHFDFSKTPSDKAIRELRR--NVGMVFQQYNLWPHLTVQQNLIEA---PCRVLGLSK-- 115
Query: 200 QKALESAVDDMDLMGRL-LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL A L+ RL L + DR
Sbjct: 116 DQALARA---EKLLERLRLKPY--------------------------------ADRFPL 140
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVI 311
S G Q R+++ + L+ +P +LL DEPT LD + I L + VI
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE----TGITQVI 196
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
++H+ + +++V E G
Sbjct: 197 VTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.9 bits (154), Expect = 2e-10
Identities = 60/207 (28%), Positives = 90/207 (43%), Gaps = 60/207 (28%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L I GE +IG +G GKSTL++ I LE+P G VL+ ++ AL
Sbjct: 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLT----------ALSE 74
Query: 504 D---------------------KTVLETVA---EAAEDWRIDDIK----------GLLGR 529
+TV + VA E A +IK GL
Sbjct: 75 KELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA-GTPKAEIKARVTELLELVGL--- 130
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-----EMLE 583
+D DR + LSGG+K R+A + + P LL DE T+ LD P+ E+L+
Sbjct: 131 ----SDKADRYPAQLSGGQKQRVAIARALASNPKVLLC-DEATSALD-PATTRSILELLK 184
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRV 610
+ E T++ ++H+ VK+I +RV
Sbjct: 185 DINRELGLTIVLITHEMDVVKRICDRV 211
|
Length = 343 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 38/176 (21%), Positives = 60/176 (34%), Gaps = 44/176 (25%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+++I + G +G GKSTL+ + L P +
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYASGKARLISFL------PKFSRN----- 60
Query: 501 LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM------LDRKVSLLSGGEKARLAF 554
K + ID ++ L+ D+ L +K+S LSGGE R+
Sbjct: 61 ----KLI-----------FIDQLQFLI-------DVGLGYLTLGQKLSTLSGGELQRVKL 98
Query: 555 CKFMVKPS--TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQ 605
+ TL +LDEP+ L L E I TVI + H+ +
Sbjct: 99 ASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSS 154
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 2e-10
Identities = 59/220 (26%), Positives = 91/220 (41%), Gaps = 54/220 (24%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMG 472
+ +++ KNL Y ++ ++I + TA+IGP+GCGKSTLL+ LI G
Sbjct: 2 TMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPG 61
Query: 473 -------------LEKPRGGEVLLGEH--------NVLPNYFEQNQA---------EALD 502
+ V L N P +N A
Sbjct: 62 CRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKT 121
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKP 561
LD V +++ AA W D++K D L LSGG++ RL + + V P
Sbjct: 122 LDTIVEKSLKGAAL-W--DEVK----------DRLHDSALSLSGGQQQRLCIARTLAVNP 168
Query: 562 STLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+L +DEP + LD + +E+ I + K TVI V+H+
Sbjct: 169 EVIL-MDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHN 207
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.3 bits (154), Expect = 2e-10
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++++ I K++ GV L + EV+ GE VGL G NGAGK+T ++I+ SG
Sbjct: 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-------SGVYPHG 54
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ +I + + S R + +E+ + +L + +++ L G +
Sbjct: 55 TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG--NEITLPGGRM 112
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
++ + +A+ L+ EL AD+ R V + G Q + + K L +
Sbjct: 113 A-YNAMYLRAK------------NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
LL+LDEP++ L E L L V V ISH + +C I
Sbjct: 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 49/184 (26%), Positives = 79/184 (42%), Gaps = 45/184 (24%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---------------NVLPNYFE 494
G+ ++GPNG GKST LK++ G KP LG+ + L NYF
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPN-----LGKFDDPPDWDEILDEFRGSELQNYFT 80
Query: 495 QNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ + + V E + + E ++D++ L + +LDR
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH----VLDRN 136
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA-----ISEYKGTVIT 595
+ LSGGE R+A + + + DEP+++LDI K+ L A ++E V+
Sbjct: 137 IDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI--KQRLNAARLIRELAEDDNYVLV 194
Query: 596 VSHD 599
V HD
Sbjct: 195 VEHD 198
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 46/205 (22%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ E++ YK G +L +++ +K GE VG+VG +G+GK+T ++I P++G V+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 156 KAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ + A+L ++ V + +R++R+ A + +ERV +A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALA-----DPGMSMERVIEA---- 111
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L D + +PE G+ G++ A S G +
Sbjct: 112 -------AKLAGAHDFISE-----------------LPE-GYDTIVGEQ-GAGLSGGQRQ 145
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L+ +P +L+ DE T+ LD
Sbjct: 146 RIAIARALIHNPRILIFDEATSALD 170
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 48/229 (20%)
Query: 102 NISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
N+ K Y+ VL +V++ + +GE + +VG +G+GK+T L ++ G + P SG+VI
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI-- 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESAVDDM 210
F Q +S + E F+ F + LE V L
Sbjct: 68 -------FNGQPMS-KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL------- 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+G+ ++ A+ +++ +++ +G R + S G + R+++
Sbjct: 113 -LIGK--------KKPAEI------NSRALEMLAAVGLEHRANHR-PSELSGGERQRVAI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLG-KQDVPMVIISHD 315
+ L+ +P L+L DEPT +LD D+I L G L Q ++++HD
Sbjct: 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
|
Length = 233 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 63/222 (28%), Positives = 99/222 (44%), Gaps = 53/222 (23%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGG 479
I+NL+ Y + NL I + TA+IGP+GCGKSTLL+ LI G++ G
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKIT--G 63
Query: 480 EVLLGEHNVL------------------PNYFE----QNQAEALDL----DKTVLETVAE 513
++ + ++ PN F +N A L DK VL+ V E
Sbjct: 64 KLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVE 123
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
A W D++K D L LSGG++ RL + + ++++DE
Sbjct: 124 RSLRGAALW--DEVK----------DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDE 171
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNR 609
PT+ LD + +EE + E K T++ V+H ++I +R
Sbjct: 172 PTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDR 213
|
Length = 249 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 3e-10
Identities = 59/221 (26%), Positives = 99/221 (44%), Gaps = 40/221 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLE 474
+++ +NL Y D N N+ I + TA+IGP+GCGKST L+ L+ G++
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 475 KPRGGEVLLGEHNVLPNYFEQNQAEALDLDK---TVLET-----------------VAEA 514
G V+ N+ N F + L+L + V +T +
Sbjct: 65 IE--GNVIYEGKNIYSNNF-----DILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGT 117
Query: 515 AEDWRIDDI--KGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ ++D+I + L N D L+ LSGG++ RL + + ++++DEP
Sbjct: 118 KDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEP 177
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNR 609
T+ LD S +EE I K T+I V+H+ +I +R
Sbjct: 178 TSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDR 218
|
Length = 254 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 34/196 (17%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV---------LLGEHNVLPNYFE- 494
L+++ GE A++G +GCGKSTL +L++GLE P G V L F
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQR---KAFRR 89
Query: 495 ------QNQAEALDLDKTVLETVAE---------AAEDWRIDDIKGLLGRCNFKADMLDR 539
Q+ A++ KTV E + E AE R+ +L + +LD+
Sbjct: 90 DIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAE--RLARASEMLRAVDLDDSVLDK 147
Query: 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYKGTV-IT 595
+ LSGG+ R+ + + LL+LDE ++LD+ + ++ + + + GT +
Sbjct: 148 RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLF 207
Query: 596 VSHDRYFVKQIVNRVV 611
++HD V++ RV+
Sbjct: 208 ITHDLRLVERFCQRVM 223
|
Length = 268 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 46/207 (22%), Positives = 88/207 (42%), Gaps = 37/207 (17%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE- 499
N A+L I +GE I+G +G GKST ++++ L +P G++ + N++ +Q+ E
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM----KQSPVEL 65
Query: 500 ---------------ALDLDKTVLETVAEAAEDWRID---------DIKGLLGRCNFKAD 535
AL T+L+ + E ++ L+G +
Sbjct: 66 REVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEY--- 122
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAISEYKG--- 591
R LSGG + R+ + + +L++DE + LD + M +E
Sbjct: 123 -EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQK 181
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ ++HD +I +R+V +K +
Sbjct: 182 TIVFITHDLDEAIRIGDRIVIMKAGEI 208
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 4e-10
Identities = 49/206 (23%), Positives = 85/206 (41%), Gaps = 28/206 (13%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L F + +F + ++ GE + G NG GK+TLL+++ GL G++ +
Sbjct: 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTAT 76
Query: 490 PNYFEQNQA-----EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------- 533
+ A L D + LE + + GL GR +
Sbjct: 77 RGDRSRFMAYLGHLPGLKADLSTLEN---------LHFLCGLHGRRAKQMPGSALAIVGL 127
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---K 590
A D V LS G+K RLA + + P+ L +LDEP +LD+ ++ IS +
Sbjct: 128 AGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGG 187
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGS 616
G + +H Y + R++ ++ +
Sbjct: 188 GAALVTTHGAYAAPPVRTRMLTLEAA 213
|
Length = 214 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 4e-10
Identities = 59/213 (27%), Positives = 90/213 (42%), Gaps = 52/213 (24%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRG---GEV 481
+ L F Y N+ + + TA+IGP+GCGKST L+ + P GE+
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 482 LLGEHNV---------------------LPNYFE----QNQAEALDLD----KTVLETVA 512
+L NV PN F +N A L + +++LE
Sbjct: 79 ILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERV 138
Query: 513 E----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E A W D++K LG F LSGG++ RL + + +L+ D
Sbjct: 139 ENALRNAALW--DEVKDRLGDLAFN----------LSGGQQQRLCIARALATDPEILLFD 186
Query: 569 EPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
EPT+ LD + +EE IS+ K T++ V+H+
Sbjct: 187 EPTSALDPIATASIEELISDLKNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (148), Expect = 4e-10
Identities = 67/226 (29%), Positives = 94/226 (41%), Gaps = 53/226 (23%)
Query: 415 PERGR---SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
PER + G+ V KN Y + + N I TAIIGP+GCGKST L+ I
Sbjct: 27 PERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAIN 86
Query: 472 GL-----------------EKPRG---GEVLLGEH--------NVLPNYFEQNQAEALDL 503
+ E G EVLL + N P N A L
Sbjct: 87 RMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRL 146
Query: 504 ----DKTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555
DK LE + E A W D++ D LD+ LSGG++ RL
Sbjct: 147 HGINDKKQLEEIVEKSLRKAALW--DEVS----------DRLDKNALGLSGGQQQRLCVA 194
Query: 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+ + +L+LDEPT+ LD + +E+ I E +G T++ V+H+
Sbjct: 195 RTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHN 240
|
Length = 286 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 56/219 (25%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV-----REEF 182
L G +G+GKT+ + +IAG PD G + L+ V + + +
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIE----------LNGRVLVDAEKGIFLPPEKRRI 78
Query: 183 MSAFKE-----EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
F++ + G L S D + LL LL R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWK--SMRAQFDQLVALLGIEHLLDR------------ 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT--- 294
P + S G + R+++G+ LL P+LLL+DEP LDL
Sbjct: 125 -----YPG-------------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
Query: 295 -IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+ +LE + ++P++ +SH + +L ++V E G
Sbjct: 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 44/153 (28%), Positives = 76/153 (49%), Gaps = 24/153 (15%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE----------- 494
T+ERG+ A++G +GCGKSTL +L+ +E P GGE+ ++L E
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
Query: 495 --QNQAEALDLDKTVLETVAE---------AAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
QN +L+ K V + + E AAE R + ++ + + + DR +
Sbjct: 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAE--RREKALAMMAKVGLRPEHYDRYPHM 154
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
SGG++ R+A + ++ ++V DEP + LD+
Sbjct: 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187
|
Length = 327 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 5e-10
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 49/195 (25%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSNM 161
+LK+V+ K GE + ++G +GAGKTT + +A + G I AK
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 162 KIAFLSQEFEVSM-SRTVREE--FMSAFK--EEMEIAGKLERVQKALESAVDDMDLMGRL 216
I+ Q+ ++ + + TVRE F + + + K ERV + L+ + L
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ----ALGL---- 150
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
RK +T G V S G + R++ LL
Sbjct: 151 --------RKCA----NTR-------------IGVPGR--VKGLSGGERKRLAFASELLT 183
Query: 277 DPDLLLLDEPTNHLD 291
DP LL DEPT+ LD
Sbjct: 184 DPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 5e-10
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 22/177 (12%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
EF + +F+ + + G+ AI+GP G GK+TL+ L+ + P G++L+ ++
Sbjct: 341 TFEFANSSQGVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDI 399
Query: 489 L-----------------PNYFEQNQAEALDLDKT--VLETVAEAAEDWRIDDIKGLLGR 529
F ++ E + L + E V EAA+ D +L R
Sbjct: 400 NTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDF--ILKR 457
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
N ++ + + LSGGE+ RLA + ++K + +LVLDE T+ LD+ ++ ++ AI
Sbjct: 458 SNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAI 514
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 5e-10
Identities = 51/201 (25%), Positives = 87/201 (43%), Gaps = 26/201 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ I+ + F Y + N+ + TAIIGP+GCGKSTLL+ + + G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
VLL N+ PN F ++ + + +L T A++ D +
Sbjct: 65 AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVV 124
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
+ + D L + LSGG++ RL + + ++++DEP + LD S
Sbjct: 125 EKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTM 184
Query: 581 MLEEAISEYKG--TVITVSHD 599
+EE + E K T+ V+H+
Sbjct: 185 RIEELMQELKQNYTIAIVTHN 205
|
Length = 251 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 5e-10
Identities = 60/207 (28%), Positives = 94/207 (45%), Gaps = 39/207 (18%)
Query: 424 VVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ KN+ + YE +L + NL +++GE I+G NG GKST+ K + L P
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 478 GGEVLL------GEHN----------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI- 520
G+V + E N V N NQ A V E VA E+ I
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQN--PDNQIVA----TIVEEDVAFGPENLGIP 117
Query: 521 -DDIKGLLGRCNFKADMLDRK---VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
++I+ + K M + + LLSGG+K R+A + ++ DEPT LD
Sbjct: 118 PEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLD- 176
Query: 577 PS--KEML---EEAISEYKGTVITVSH 598
PS +E++ +E +Y T+I ++H
Sbjct: 177 PSGRREVVNTIKELNKKYGITIILITH 203
|
Length = 280 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 6e-10
Identities = 56/216 (25%), Positives = 91/216 (42%), Gaps = 54/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKP 476
+ ++NL ++D + NL I + TA+IGP+GCGKST ++ LI G
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHE 62
Query: 477 RGGEVLLG-----------------------EHNVLPNYFEQNQAEALDL----DKTVLE 509
G + L + N P N A L + D+ +E
Sbjct: 63 --GHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 510 TVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
E AA W D++K D LD+ LSGG++ RL + + ++
Sbjct: 121 ERVEESLKAAALW--DEVK----------DKLDKSALGLSGGQQQRLCIARTIAVSPEVI 168
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++DEP + LD S +E+ I + K T++ V+H+
Sbjct: 169 LMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 6e-10
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 31/231 (13%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ NISKS+ GV L +V +V+ L+G NGAGK+T L+ + G + DSG+++
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL---- 56
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
F +E + S+ E +S +E+ + L+R S +D+M L GR
Sbjct: 57 -----FQGKEIDFKSSKEALENGISMVHQELNLV--LQR------SVMDNMWL-GR---- 98
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLGKILLQDP 278
K V+ D + + EL D + VA+ S QM+M + K +
Sbjct: 99 ---YPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-VATLSVS-QMQMIEIAKAFSYNA 153
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326
++++DEPT+ L + L + K + +V ISH + QLC +I
Sbjct: 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI 204
|
Length = 491 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 7e-10
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ L+ + Y+ + + D+ V GE V ++G +GAGK+T L +IAG EP SG++ +
Sbjct: 1 LALDKVRYEYEHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN 58
Query: 157 AKSNMKIA-------FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+S+ +A L QE + TVR+ + KL Q+
Sbjct: 59 DQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL----KLNAEQQEKVVDA-- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
AQ V + D DRL S G + R++
Sbjct: 113 -----------------AQQVGIA-----------------DYLDRLPEQLSGGQRQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L++ +LLLDEP + LD + + ++ ++ +++++H + + ++
Sbjct: 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198
Query: 326 IVETEMG 332
I G
Sbjct: 199 IAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-10
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 39/236 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
K++++ S + +LK V VKKGE ++G NG+GK+T + IAG E SG ++
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQKALES-----AVDD 209
++ E+ R AF+ EI G LE ++ AL + +
Sbjct: 62 KGQDL--------LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEP 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+DL+ D LL+ K + +D S + FS G + R
Sbjct: 114 LDLL----DFLKLLKAKLALLGMDEEFLNRS---------------VNEGFSGGEKKRNE 154
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322
+ ++ L +P L +LDE + LD+D ++ + + + D +II+H + L+ +
Sbjct: 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 7e-10
Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 66/258 (25%)
Query: 99 KLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++N+S S+ V + V++E+KKGE +G+VG +G+GK+ + I G P
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPNAR 61
Query: 155 IKAKS----NMKIAFLSQEF-------EVSM-----------SRTVREEFMSAFKEEMEI 192
I + LS++ E++M T+ ++ + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
K E ++A+E LL+ V + + + K P
Sbjct: 122 LSKKEAKERAIE-----------------LLEL----VGIPDPE-RRLKSYPH------- 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
S G + R+ + L +P LL+ DEPT LD+ ++ L+ ++
Sbjct: 153 ------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206
Query: 309 MVIISHDRAFLDQLCTKI 326
+++I+HD + ++ ++
Sbjct: 207 LILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 7e-10
Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 40/202 (19%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
L G+ +IIG +G GKST L+ I LEKP G + + + + Q + D
Sbjct: 27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKR 86
Query: 505 K---------------------TVLETVAEA-------AEDWRIDDIKGLLGRCNFKADM 536
+ TVLE V EA ++ I+ + L + A+
Sbjct: 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGI-AEK 145
Query: 537 LDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEE------AISEY 589
D + LSGG++ R+A + + ++P +L DEPT+ LD E++ E ++E
Sbjct: 146 ADAYPAHLSGGQQQRVAIARALAMEPEVML-FDEPTSALD---PELVGEVLKVMQDLAEE 201
Query: 590 KGTVITVSHDRYFVKQIVNRVV 611
T++ V+H+ F + + + V+
Sbjct: 202 GRTMVVVTHEMGFARDVSSHVI 223
|
Length = 256 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 59/231 (25%), Positives = 97/231 (41%), Gaps = 40/231 (17%)
Query: 401 IEKPF------QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKT 453
+EK F P V N+ F Y+ R + N + TI G+
Sbjct: 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTV 292
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL--DKTVL--- 508
AI+G +G GKST+L+L+ G + + + + + +Q+ A+ + TVL
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITIDGQD-IRDVTQQSLRRAIGIVPQDTVLFND 351
Query: 509 ---------------ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS----LLSGGEK 549
E V AAE +I D L + D V LSGGEK
Sbjct: 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSL------PEGYDTGVGERGLKLSGGEK 405
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
R+A + ++K +L+LDE T+ LD +++ ++ A+ E T + ++H
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAH 456
|
Length = 497 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 7e-10
Identities = 60/239 (25%), Positives = 96/239 (40%), Gaps = 63/239 (26%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDSGNVIKAKSNMKIAFL 166
V+K++++ ++ GE +GLVG +G+GK+T LR+I Q E I F
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGE--------------IWFD 345
Query: 167 SQEFEVSMSRT---VREEFMSAFKE-----------EMEIAGKLERVQKALESAVDDMDL 212
Q R VR F++ I L Q L +A
Sbjct: 346 GQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA------ 399
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
QR+ Q V +M E+G + R A FS G + R+++ +
Sbjct: 400 -----------QREQQ----------VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIAR 438
Query: 273 ILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
L+ P L++LDEPT+ LD + L+ K + + ISHD + LC +++
Sbjct: 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 7e-10
Identities = 60/235 (25%), Positives = 90/235 (38%), Gaps = 76/235 (32%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L++ Y D N E+GE A++GPNG GKSTL G+ KP GEVL
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 483 LGEHNVLPNYFEQNQAEALDLDK------------------------TVLETVAEAAEDW 518
+ + E + DK TV E VA
Sbjct: 61 I-------------KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVA------ 101
Query: 519 RIDDIKGLLGRCNFKADMLD---------RKVSL----------LSGGEKARLAFCKFMV 559
G N + + V + LSGG+K R+A +
Sbjct: 102 --------FGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILA 153
Query: 560 KPSTLLVLDEPTNHLDIP---SKEM-LEEAISEYKGTVITVSHDRYFVKQIVNRV 610
++VLDEPT+ LD P S+ M L +++ T+I +HD V ++V
Sbjct: 154 MKPEIIVLDEPTSGLD-PMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKV 207
|
Length = 275 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 8e-10
Identities = 60/202 (29%), Positives = 94/202 (46%), Gaps = 27/202 (13%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++V K++ F Y D + N + +I RG TA+IG NG GKST+ KLI GL P
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP 63
Query: 481 --------VLLGEHNVLPNYFE------QNQAEALDLDKTVLETVAEAAEDWRI--DDIK 524
+ L V + E QN + TV + VA E+ + ++
Sbjct: 64 NSKITVDGITLTAKTVW-DIREKVGIVFQNPDNQF-VGATVGDDVAFGLENRAVPRPEMI 121
Query: 525 GLLGRCNFKADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ MLD + + LSGG+K R+A + +++LDE T+ LD KE
Sbjct: 122 KIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181
Query: 582 LEEAISEYKG----TVITVSHD 599
+ + I + K TVI+++HD
Sbjct: 182 ILKLIRKLKKKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 8e-10
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 38/204 (18%)
Query: 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y + N I G+ A++G +G GKST+ L+ GE+L
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 483 LGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAED-WRI 520
L H++ L + Q N A A ++ E + EAA + +
Sbjct: 402 LDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYART-EQYSREQIEEAARMAYAM 460
Query: 521 DDIKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
D I + + LD + LLSGG++ R+A + +++ S +L+LDE T+ LD
Sbjct: 461 DFINKM-------DNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 577 PSKEMLEEAISEYKG--TVITVSH 598
S+ ++ A+ E + T + ++H
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAH 537
|
Length = 582 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 9e-10
Identities = 58/249 (23%), Positives = 120/249 (48%), Gaps = 40/249 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
V+ +++K + +TVL + + V GEKV L+G +G+GK+T LRI+ E D G + ++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL-----ESAVDDMD 211
+ + + + + +R ++ K+ V ++ ++ +D++
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLR-----------QMRNKIGMVFQSFNLFPHKTVLDNVT 109
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ L +A+A + + +L+ +G AD D + A S G Q R+++
Sbjct: 110 EAPVLV----LGMARAEA------EKRAMELLDMVGL-ADKADHMPAQLSGGQQQRVAIA 158
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD----RAFLDQLC 323
+ L P ++L DE T+ LD + + + + + D+ M++++H+ R F D++C
Sbjct: 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218
Query: 324 ----TKIVE 328
+IVE
Sbjct: 219 FFDKGRIVE 227
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 9e-10
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 46/189 (24%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IKAKSNMKIAFLSQEF 170
V + + V GE + + G NGAGKTT LR++AG +SG + I K+
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---------- 75
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+R R FM+ G L ++ L S ++++
Sbjct: 76 ----TRGDRSRFMAYL-------GHLPGLKADL-STLENLHF------------------ 105
Query: 231 NLDTLDAKVSKLMPELGFT----ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
L L + +K MP A D LV S+G + R++L ++ L L LLDEP
Sbjct: 106 -LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164
Query: 287 TNHLDLDTI 295
+LDL+ I
Sbjct: 165 YANLDLEGI 173
|
Length = 214 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 9e-10
Identities = 51/237 (21%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P G+++
Sbjct: 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT- 68
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+++ R + A K ++ + ++ L +L + +
Sbjct: 69 ----------INLVRDKDGQLKVADKNQLRL------LRTRLTMVFQHFNLWSHMTVLEN 112
Query: 222 LLQRKAQAVNLDTLDAK--VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+++ Q + L +A+ K + ++G + S G Q R+S+ + L +P+
Sbjct: 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Query: 280 LLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
+LL DEPT+ LD + + E L L ++ MV+++H+ F + + ++ G
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
|
Length = 257 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 9e-10
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 42/234 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + +S Y + L +V+ + +GE V L+G NGAGKTT L + G SG ++
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV-- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F ++ ++ +T + +E + I + RV + V++ MG
Sbjct: 64 -------FDGKD--ITDWQTAK-----IMREAVAIVPEGRRVFSRM--TVEENLAMGGFF 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
E D Q + V +L P L + + + S G Q +++G+ L+
Sbjct: 108 AERDQFQERI---------KWVYELFPRL---HERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Query: 278 PDLLLLDEPTNHLD-------LDTIEWL--EG---YLGKQDVPMVIISHDRAFL 319
P LLLLDEP+ L DTIE L +G +L +Q+ + DR ++
Sbjct: 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYV 209
|
Length = 237 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (145), Expect = 9e-10
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 41/221 (18%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
+ R LF+ +L +++G TA+IG G GKSTLL+ + GL +P G+V +G+ V+ +
Sbjct: 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD-IVVSSTS 74
Query: 494 EQNQ--------------AEALDLDKTVLETVAEAAEDWRIDDIKG------LLGRCNFK 533
+Q + E+ ++TVL+ VA +++ I K L
Sbjct: 75 KQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA 134
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EMLE--EAISEYK 590
+ ++ LSGG+ R+A + +LVLDEPT LD ++ EM++ E+I +
Sbjct: 135 DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSG 194
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
TV+ V+H ++ DYA DY Y LEK
Sbjct: 195 QTVVLVTHLM---------------DDVADYA-DYVYLLEK 219
|
Length = 288 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 1e-09
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 53/215 (24%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-------KAKSNMKIAF 165
LK V +++GE + L+G +G GK+T L +I+G +P SG VI + + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD-MDLMGRLLDEFDLLQ 224
Q + + TVRE A + K ER + V++ + L+G L
Sbjct: 61 --QNYSLLPWLTVRENIALAVDRVLPDLSKSER-----RAIVEEHIALVG--------LT 105
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
A D+ S G + R+++ + L P +LLLD
Sbjct: 106 EAA--------------------------DKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
Query: 285 EPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
EP LD T L+ L + V +++++HD
Sbjct: 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 1e-09
Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 43/191 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
N +L + GE I+G +G GKSTLL+ I L +P G+VL+ ++ ++ E
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIA----AMSRKEL 96
Query: 501 LDLDK----------------TVLETVAEAAEDWRIDDIKGL------------LGRCNF 532
+L + TVLE VA E ++G+ L
Sbjct: 97 RELRRKKISMVFQSFALLPHRTVLENVAFGLE------VQGVPRAEREERAAEALELVGL 150
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLEEAI---SE 588
+ + LSGG + R+ + + +L++DE + LD + +EM +E + +E
Sbjct: 151 E-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAE 209
Query: 589 YKGTVITVSHD 599
+ T++ ++HD
Sbjct: 210 LQKTIVFITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 1e-09
Identities = 50/192 (26%), Positives = 71/192 (36%), Gaps = 40/192 (20%)
Query: 453 TAIIGPNGCGKSTLLKLI-MGL--EKPRGGEVLLGEHNVLPNYFEQNQAEA-------LD 502
T I+G NG GK+T+++ + L E P + G H P + + A
Sbjct: 25 TLIVGQNGAGKTTIIEALKYALTGELPPNSK--GGAH--DPKLIREGEVRAQVKLAFENA 80
Query: 503 LDKTVLET----VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA------RL 552
K T + E + L DM R SGGEK RL
Sbjct: 81 NGKKYTITRSLAILENVIFCHQGESNWPL------LDMRGR----CSGGEKVLASLIIRL 130
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEM-LEEAISEYKGT----VITVSHDRYFVKQIV 607
A + +L LDEPT +LD + E L E I E K +I ++HD V
Sbjct: 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAA- 189
Query: 608 NRVVEVKGSNLQ 619
+ + V+ Q
Sbjct: 190 DHIYRVEKDGRQ 201
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 58/216 (26%), Positives = 89/216 (41%), Gaps = 50/216 (23%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI-----MGLEKP 476
+ V I + Y NL+I E TAIIGP+GCGKST +K + M
Sbjct: 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVK 69
Query: 477 RGGEVLLGEHNVLP-------------------NYFEQN---------QAEALDLDKTVL 508
GE+ N+L N F Q+ + K +
Sbjct: 70 LTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQ 129
Query: 509 ETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
E V ++ +D W D++K D L + LSGG++ RL + + +L
Sbjct: 130 EIVEKSLKDVALW--DEVK----------DRLHTQALSLSGGQQQRLCIARALATNPDVL 177
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++DEPT+ LD S +EE I + K T++ V+H+
Sbjct: 178 LMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHN 213
|
Length = 259 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 57.0 bits (137), Expect = 1e-09
Identities = 36/163 (22%), Positives = 57/163 (34%), Gaps = 44/163 (26%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVL 508
GE I+GP G GK+TL + + P GG V+ +D + +
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY-----------------IDGEDILE 43
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
E + + ++ K + SG + RLA +L+LD
Sbjct: 44 EVLDQLLL------------------IIVGGKKASGSGELRLRLALALARKLKPDVLILD 85
Query: 569 EPTNHLDIPSKEMLEEAI---------SEYKGTVITVSHDRYF 602
E T+ LD + +L SE TVI ++D
Sbjct: 86 EITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 30/208 (14%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
++G+ +GLVG NG GK+T L+I+AG+ +P+ G +I F E + ++
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
+ + K + ++ + KA++ V +LL++K + LD L
Sbjct: 83 LEGDVKVIVKPQY-----VDLIPKAVKGKVG------------ELLKKKDERGKLDEL-V 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD---T 294
+L L DR + S G R+++ L +D D DEP+++LD+
Sbjct: 125 DQLELRHVL-------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLN 177
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L L + D ++++ HD A LD L
Sbjct: 178 AARLIRELAEDDNYVLVVEHDLAVLDYL 205
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.7 bits (147), Expect = 2e-09
Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 36/240 (15%)
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENIS----KSYKGVTVLK 114
I +A++ +E F F+ ++ ++ ++ V+ +I+ S +GV
Sbjct: 299 IFEARAKLEDFFDLEDSVFQREEPADAPE---LPNVKGAVEFRHITFEFANSSQGV---F 352
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
DV++E K G+ V +VG GAGKTT + ++ +P G ++ + I +++E S+
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID--INTVTRE---SL 407
Query: 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234
+++ F A I E ++ E A D+ ++ + A D
Sbjct: 408 RKSIATVFQDAGLFNRSIR---ENIRLGREGATDE-----------EVYEAAKAAAAHDF 453
Query: 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ + + +G + G+RL S G + R+++ + +L++ +L+LDE T+ LD++T
Sbjct: 454 ILKRSNGYDTLVG---ERGNRL----SGGERQRLAIARAILKNAPILVLDEATSALDVET 506
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 59/207 (28%), Positives = 90/207 (43%), Gaps = 51/207 (24%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---GEVLLGEHNV 488
Y D+ NL ++RG A+IGP+GCGK+T L+ I M P G +LL ++
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDI 73
Query: 489 L-------------------PNYFE-----QNQAEALDL----DKTVLETVAE----AAE 516
PN F N L L D+ L VAE A
Sbjct: 74 YGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAA 133
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
W D++K D L + LSGG++ RL + + +L++DEPT+ LD
Sbjct: 134 LW--DEVK----------DRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDP 181
Query: 577 PSKEMLEEAISEYKG--TVITVSHDRY 601
S +E+ +++ K T+I V+H+ +
Sbjct: 182 ASTARIEDLMTDLKKVTTIIIVTHNMH 208
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 60/214 (28%), Positives = 94/214 (43%), Gaps = 48/214 (22%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL----KLIMGLEKPR 477
+ + I++L+ + + + NL I TA++GP+G GKSTLL +LI + R
Sbjct: 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 478 -GGEVLLGEHNV-----------------LPN------YFEQNQAEALDLDKTV------ 507
GEV L ++ +PN FE N A L L++ V
Sbjct: 61 VSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFE-NVALGLKLNRLVKSKKEL 119
Query: 508 LETVAEAAEDWRI-DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
E V A E ++ D++K D LD LSGG++ RL + + +L+
Sbjct: 120 QERVRWALEKAQLWDEVK----------DRLDAPAGKLSGGQQQRLCIARALAFQPEVLL 169
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSH 598
DEPT +LD + +E E K T++ V+H
Sbjct: 170 ADEPTANLDPENTAKIESLFLELKKDMTIVLVTH 203
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 57/216 (26%), Positives = 97/216 (44%), Gaps = 54/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKP----- 476
++ I+N Y ++ + I + + TAIIGP+GCGK+TLL+ I M P
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 477 -----RGGEVLLGEHNV----------------LPNYFEQNQAEALD---------LDKT 506
+G ++ + +V P N A LD+
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
V E++ +AA W D++K L++ + LSGG++ RL + + +++
Sbjct: 123 VEESLKKAAL-W--DEVK----------SELNKPGTRLSGGQQQRLCIARALAVEPEVIL 169
Query: 567 LDEPTNHLD-IPSK--EMLEEAISEYKGTVITVSHD 599
LDEPT+ LD I ++ E L E +SE T++ V+H+
Sbjct: 170 LDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 58/215 (26%), Positives = 91/215 (42%), Gaps = 54/215 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ +K+L F Y ++ I R + TAIIGP+GCGKST +K + + + G G
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG 67
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAE-------------ALDLDKTV 507
V N+ PN F + E DLD+ V
Sbjct: 68 VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIV 127
Query: 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E+ + A W ++K D L++ LSGG++ RL + + +KP LL
Sbjct: 128 -ESALKGAALW--QEVK----------DKLNKSALGLSGGQQQRLCIARALAIKPKVLL- 173
Query: 567 LDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD + +EE I + T+ V+H+
Sbjct: 174 MDEPCSALDPIATMKVEELIHSLRSELTIAIVTHN 208
|
Length = 259 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 2e-09
Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 35/262 (13%)
Query: 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+G+ + +++ +++ G T L+D ++ V G LVGVNG+GK+T + + G SG
Sbjct: 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I+ L Q + +++ ++ + E V + V+D+ +M
Sbjct: 64 ---------ISILGQ----PTRQALQKNLVAYVPQS-------EEVDWSFPVLVEDVVMM 103
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVASFSSGWQMRMSLGK 272
GR L R+A+ + + A ++++ M E R + S G + R+ L +
Sbjct: 104 GR-YGHMGWL-RRAKKRDRQIVTAALARVDMVEFRH------RQIGELSGGQKKRVFLAR 155
Query: 273 ILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLC--TKIV 327
+ Q ++LLDEP +D+ T I L L + M++ +H+ + + C T +V
Sbjct: 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
Query: 328 ETEMGVSRTYEGNYSQYVLEKA 349
+ + S E ++ LE A
Sbjct: 216 KGTVLASGPTETTFTAENLELA 237
|
Length = 272 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 55/238 (23%), Positives = 102/238 (42%), Gaps = 29/238 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I+ + + D+ + + + GE ++GPNG GK+T ++I+GL +P GE+
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN 62
Query: 485 EHNVLPNYFEQN------QAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCN 531
+ + +N + L TV + + AE + + ++ L R
Sbjct: 63 GGPL--SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-KLQAWLERLE 119
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
K+ LS G + ++ F ++ LL+LDEP + LD + E+L++AI E K
Sbjct: 120 IVGKKTK-KIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 591 --GTVITVSH---------DRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDARE 637
T+I SH DR + + V+ +++ G +E +L E
Sbjct: 179 EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFGKKRLVIESDLSLEE 236
|
Length = 300 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.4 bits (146), Expect = 3e-09
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 36/234 (15%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++K Y G + + + V+ GE GL+GVNGAGKTT +++ G SG+
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
A ++ L+ +V + +F A+DD+ L GR
Sbjct: 1998 VAGKSI----LTNISDVHQNMGYCPQF----------------------DAIDDL-LTGR 2030
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
E L + + V + ++ + + LG + DRL ++S G + ++S L+
Sbjct: 2031 ---EHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALI 2086
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
P L+LLDEPT +D L + ++ +V+ SH + LCT++
Sbjct: 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 3e-09
Identities = 46/178 (25%), Positives = 77/178 (43%), Gaps = 22/178 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------ 497
+ +E G A++G G GKSTL++ L KP G + + +++ P +N
Sbjct: 27 SFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK 86
Query: 498 -------AEALDLDKTVLETVA------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
EA + TVL+ V +ED + L + D++ + L
Sbjct: 87 VSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFEL 146
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
SGG+ R+A M +L LDEP LD ++ + + +Y+ TVI V+H+
Sbjct: 147 SGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHN 204
|
Length = 287 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 3e-09
Identities = 60/194 (30%), Positives = 88/194 (45%), Gaps = 33/194 (17%)
Query: 430 LEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
LE ++ +L L NLT+ TAI G +G GK++L+ I GL +P+ G ++L
Sbjct: 2 LELNFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR- 60
Query: 488 VLPNYFEQNQAEALDLDK----------------TV---LETVAEAAEDWRIDDIKGLLG 528
VL F+ + L +K V L + + D I LLG
Sbjct: 61 VL---FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG 117
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK-EM---LEE 584
+LDR LSGGEK R+A + ++ LL++DEP LD+P K E+ LE
Sbjct: 118 ----IEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173
Query: 585 AISEYKGTVITVSH 598
E ++ VSH
Sbjct: 174 LAREINIPILYVSH 187
|
Length = 352 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 4e-09
Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L+++ SY + + D+T V GE V ++G +GAGK+T L +IAG E P SG ++
Sbjct: 2 LALDDVRFSYGHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ ++ L QE + TV + + KL Q+ V+
Sbjct: 60 GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL----KLNAEQR---EKVEA 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
A V L A RL S G + R++
Sbjct: 113 A----------------AAQVGL-----------------AGFLKRLPGELSGGQRQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L + L+++ +LLLDEP + LD
Sbjct: 140 LARCLVREQPILLLDEPFSALD 161
|
Length = 231 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 57.2 bits (138), Expect = 4e-09
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 56/209 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ E++SK+Y G L+ VT+ ++ GE L G +GAGK+T L++I G E P +G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 155 ----IKAKSNMKIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKA 202
I N ++ FL Q+ + M RTV + + IAG + +++
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP----LIIAGASGDDIRRR 117
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A+D + L+ D S
Sbjct: 118 VSAALDKVGLL-------------------------------------DKAKNFPIQLSG 140
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G Q R+ + + ++ P +LL DEPT +LD
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 4e-09
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 33/249 (13%)
Query: 101 ENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
N+SK++ GV VL++V+ V GE V L G +G+GK+T LR + PD G
Sbjct: 8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67
Query: 154 VIKAKSNMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
++ + ++ E EV R ++S F + L+ V + L
Sbjct: 68 ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL--------- 118
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
A+ V + AK + L+ L A+FS G Q R+++ +
Sbjct: 119 -------------LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
+ D +LLLDEPT LD + L + +V I HD + + ++++
Sbjct: 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
Query: 330 EMGVSRTYE 338
R
Sbjct: 226 SAFSPRKEA 234
|
Length = 235 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-09
Identities = 53/204 (25%), Positives = 86/204 (42%), Gaps = 28/204 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGE 480
++ IKNL + + NL+I +GE AI+GPNG GKSTL K+I G K G+
Sbjct: 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD 65
Query: 481 VLLGEHNVL----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524
+L ++L E D + + + +D ++
Sbjct: 66 ILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLE 125
Query: 525 GL------LGRCNFKADMLDRKVSL-LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
L L L R V+ SGGEK R + + S L +LDE + LDI
Sbjct: 126 FLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDID 185
Query: 578 SKEMLEEAISEYKGT---VITVSH 598
+ +++ E I++ + +I ++H
Sbjct: 186 ALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 4e-09
Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 53/226 (23%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL-----------------K 468
++KNL Y + + NL I + E TA IGP+GCGKST L +
Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGE 66
Query: 469 LI---MGLEKPRGGEVLL--------GEHNVLPNYFEQNQA-----EALDLDKTVLETVA 512
L + + VLL + N P N A L +K L+ +
Sbjct: 67 LDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIV 126
Query: 513 EAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVL 567
E + W +++ L F+ LSGG++ RL + VKP T+L++
Sbjct: 127 EKSLTSVGLW--EELGDRLKDSAFE----------LSGGQQQRLCIARAIAVKP-TMLLM 173
Query: 568 DEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
DEP + LD + ++E I E K T+I V+H K++ +RV
Sbjct: 174 DEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVA 219
|
Length = 251 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 5e-09
Identities = 46/229 (20%), Positives = 80/229 (34%), Gaps = 46/229 (20%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ + L Y + + GE I+G +G GKSTLL + G P G
Sbjct: 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATY 62
Query: 484 -----GEHNVLP--------------NYFEQNQAEALDLDKTVLETVAE----------- 513
E + + QN + L + + + E
Sbjct: 63 IMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYG 122
Query: 514 ----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
A+DW L +D SGG + RL + +V L+ +DE
Sbjct: 123 NIRATAQDW--------LEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDE 174
Query: 570 PTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
PT LD+ + ++L + + VI V+HD + + R++ ++
Sbjct: 175 PTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQ 223
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 5e-09
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 425 VTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++++ F ++ NL + +GE AI+GP G GKS+LL ++G + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 480 EVLLG 484
V +
Sbjct: 61 SVSVP 65
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 5e-09
Identities = 46/201 (22%), Positives = 83/201 (41%), Gaps = 36/201 (17%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
G V+ ++ L + + GE I G G G++ L + + GL P GE
Sbjct: 1 GEPVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ L V + +A+ +A ED R + GL+ LD
Sbjct: 57 ITLDGKPVTRR----SPRDAIRAG------IAYVPED-RKRE--GLV---------LDLS 94
Query: 541 V-------SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--- 590
V SLLSGG + ++ +++ + +L+LDEPT +D+ +K + I E
Sbjct: 95 VAENIALSSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAG 154
Query: 591 GTVITVSHDRYFVKQIVNRVV 611
V+ +S + + + +R++
Sbjct: 155 KAVLLISSELDELLGLCDRIL 175
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 6e-09
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
V+ +++S SY ++DV++E K G+ V +VG GAGK+T + ++ +P SG I
Sbjct: 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RIL 393
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM----EIAGKLERVQKALESAVDDMDL 212
I +++ ++R F++ I + RV + A D
Sbjct: 394 I-DGTDIRTVTRA-------SLRRNIAVVFQDAGLFNRSIEDNI-RVGR--PDATD---- 438
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+E +AQA D ++ K G+ G+R S G + R+++ +
Sbjct: 439 -----EEMRAAAERAQA--HDFIERK------PDGYDTVVGER-GRQLSGGERQRLAIAR 484
Query: 273 ILLQDPDLLLLDEPTNHLDLDT 294
LL+DP +L+LDE T+ LD++T
Sbjct: 485 ALLKDPPILILDEATSALDVET 506
|
Length = 588 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (138), Expect = 6e-09
Identities = 58/197 (29%), Positives = 96/197 (48%), Gaps = 21/197 (10%)
Query: 424 VVTIKNLEFGYEDRLLFNRAN---LTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGG 479
++ ++NL F YE N+ N +I +GE +IIG NG GKST +LI GL E+ G
Sbjct: 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGK 63
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------TVLETVAEAAEDWRI--DDIKGLLGR 529
+ GE N + + + TV + VA E+ I +++ +
Sbjct: 64 VKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDE 123
Query: 530 CNFKADMLD---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
+MLD R+ + LSGG+K R+A + +++LDE T+ LD ++ + I
Sbjct: 124 ALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVI 183
Query: 587 SE----YKGTVITVSHD 599
E Y+ TV++++HD
Sbjct: 184 HEIKEKYQLTVLSITHD 200
|
Length = 277 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-09
Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 41/208 (19%)
Query: 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGR + I N+ F Y +D L+ NL++ A++G G GKSTL L+MG
Sbjct: 338 SGR--IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 479 GEVLLG-------EHNVLPNYFEQNQAEALDLDKTVLETVA---EAAED--WRI------ 520
GE+ L H+VL Q + + L T L V + +E+ W+
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQL 455
Query: 521 --------DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572
D + LG + + LS G+K LA + +V+ +L+LDE T
Sbjct: 456 AELARSLPDGLYTPLG----------EQGNNLSVGQKQLLALARVLVQTPQILILDEATA 505
Query: 573 HLDIPSKEMLEEAISEY--KGTVITVSH 598
++D +++ +++A++ T++ ++H
Sbjct: 506 NIDSGTEQAIQQALAAVREHTTLVVIAH 533
|
Length = 592 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-09
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 42/214 (19%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
+ G+ VG++G NG GK+T L+I+AG+ +P+ G S ++ F E + +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDM----DLMGRLLDEFDLLQRKAQAVNLD 233
E + K + ++ + K ++ V ++ D G+ + + L L+
Sbjct: 157 YEGELRAVHKPQY-----VDLIPKVVKGKVGELLKKVDERGKFDEVVERL-------GLE 204
Query: 234 -TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD- 291
LD VS+L S G R+++ LL+D D+ DEP+++LD
Sbjct: 205 NVLDRDVSEL------------------SGGELQRVAIAAALLRDADVYFFDEPSSYLDI 246
Query: 292 ---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L+ + + ++++ HD A LD L
Sbjct: 247 RQRLNAARVIRELA-EDGKYVIVVEHDLAVLDYL 279
|
Length = 591 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 7e-09
Identities = 64/212 (30%), Positives = 91/212 (42%), Gaps = 54/212 (25%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK------------LIMGLEK 475
K+L Y + ++ E+ + TA+IGP+G GKST L+ + G
Sbjct: 24 KDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83
Query: 476 PRGGEVLLGEHNVL------------PNYFE----QNQAEAL---------DLDKTVLET 510
RG ++ E NV PN F +N AL LD+ V ET
Sbjct: 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIV-ET 142
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDE 569
+ A W D +K D L + LSGG++ RL + + VKP LL +DE
Sbjct: 143 SLKQAALW--DQVK----------DDLHKSALTLSGGQQQRLCIARAIAVKPDILL-MDE 189
Query: 570 PTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
P + LD S LEE + E K T+I V+H+
Sbjct: 190 PASALDPISTMQLEETMFELKKNYTIIIVTHN 221
|
Length = 267 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 7e-09
Identities = 53/198 (26%), Positives = 92/198 (46%), Gaps = 23/198 (11%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE----HNVLPNYFEQNQA- 498
N E+G+ AI+G G GKSTL++ I L KP G V + + H Y +
Sbjct: 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKR 86
Query: 499 --------EALDLDKTVLETVAEAAEDWR--IDDIKG----LLGRCNFKADMLDRKVSLL 544
E+ + TV + ++++ +D++K LL F D++ + +
Sbjct: 87 IGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQM 146
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDR 600
SGG+ ++A + ++VLDEPT LD SK +L+ ++ T+I VSHD
Sbjct: 147 SGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM 206
Query: 601 YFVKQIVNRVVEVKGSNL 618
V + + V+ +K ++
Sbjct: 207 NEVARYADEVIVMKEGSI 224
|
Length = 286 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 35/208 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ A+L IE GE ++G +G GKSTLL+ + GL G VL+ + + + + A
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 501 LDLD----------------KTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
L +TV E VA +A R+D+ L+G A
Sbjct: 101 RRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGL----AQ 156
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD--IPSK---EMLEEAISEYK 590
DRK LSGG + R+ + + +L++DEP + LD I ++ E+LE S+ K
Sbjct: 157 WADRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQ-SKLK 215
Query: 591 GTVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ VSHD +I NR+ ++G +
Sbjct: 216 KTIVFVSHDLDEALKIGNRIAIMEGGRI 243
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 54/200 (27%), Positives = 87/200 (43%), Gaps = 39/200 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE-----------------VLLGEH 486
+L I GE AI+G +G GKSTL+ ++ L+KP G L EH
Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREH 87
Query: 487 --------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
++L + E V A R+ + LL R D ++
Sbjct: 88 FGFIFQRYHLLSHLTAAQNVE-------VPAVYAGLERKQRLLRAQELLQRLGL-EDRVE 139
Query: 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVI 594
+ S LSGG++ R++ + ++ +++ DEPT LD S E +L + + + TVI
Sbjct: 140 YQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ-LRDRGHTVI 198
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
V+HD Q RV+E++
Sbjct: 199 IVTHDPQVAAQ-AERVIEIR 217
|
Length = 648 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 9e-09
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 58/209 (27%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L N+S G T+L ++ G+ GL+G NG+GK+T L+++ + P G ++
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 156 -----KAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALE 204
+K+ K+A+L Q+ + TVR E + I G L R A
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVR--------ELVAIGRYPWHGALGRFGAADR 125
Query: 205 SAVDD-MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
V++ + L+G L+ A RLV S S G
Sbjct: 126 EKVEEAISLVG--------LKPLAH--------------------------RLVDSLSGG 151
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R + ++ QD LLLDEPT+ LD+
Sbjct: 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
|
Length = 265 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (137), Expect = 9e-09
Identities = 56/218 (25%), Positives = 93/218 (42%), Gaps = 33/218 (15%)
Query: 425 VTIKNLEFGYEDRLLF-----NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + Y + F N +LT ++ + T +IG G GKST+++L GL G
Sbjct: 7 IILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG 66
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDKTV------------LETVAE----------AAED 517
+ ++G++ + N + E L K + ET+ + +
Sbjct: 67 QTIVGDYAIPANL--KKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQ 124
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
+ LL D + R LSGG+K R+A + LVLDEPT LD
Sbjct: 125 EAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184
Query: 578 SKE----MLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+E + E EYK +I V+H+ V +I + V+
Sbjct: 185 GEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVI 222
|
Length = 289 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 1e-08
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVT +KDV++EV+ GE VG+ GV G G++ + I+G +P SG ++
Sbjct: 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL-----------N 318
Query: 169 EFEVSMSRTVREEFMS--AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+V + RE A+ E +R L V D+ L L+ +K
Sbjct: 319 GKDVLGRLSPRERRRLGLAYVPE-------DRHGHGL---VLDLSLAENLV--LGRHDKK 366
Query: 227 AQA----VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282
+ ++ + +L+ E A D S S G Q ++ L + L + PDLL+
Sbjct: 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI 426
Query: 283 LDEPTNHLDLDTIE 296
+PT LD+ IE
Sbjct: 427 AAQPTRGLDVGAIE 440
|
Length = 501 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-08
Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 53/251 (21%)
Query: 79 NKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKT 137
+ ++ NK+ T ++++ + + ++S SY G +L D++ +K K +VG++G+GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFK 187
T +++ G + SG ++ ++K I +L QE S ++ E + K
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE-PYIFSGSILENLLLGAK 573
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
E + + + A E A D+ + MP LG
Sbjct: 574 ENVSQ----DEIWAACEIAEIKDDI----------------------------ENMP-LG 600
Query: 248 FTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLG 303
+ + +G +S S G + R++L + LL D +L+LDE T++LD T + + L
Sbjct: 601 YQTELSEEG----SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 304 KQDVPMVIISH 314
QD ++ ++H
Sbjct: 657 LQDKTIIFVAH 667
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 59/230 (25%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ ++ Y G L+D+ ++ GE + ++G +G GKTT L +IAG G++
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD-- 61
Query: 160 NMKIAFLSQEFEVSMS-------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
+ E V R V++ AF ++ K++R++ A +
Sbjct: 62 GKPVEGPGAERGVVFQNEGLLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQ-------- 111
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+L++ V L+ G R + S G + R+ + +
Sbjct: 112 ---------MLKK----VGLE-------------GA----EKRYIWQLSGGQRQRVGIAR 141
Query: 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
L +P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ---VLLITHD 188
|
Length = 255 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 61/216 (28%), Positives = 95/216 (43%), Gaps = 56/216 (25%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKP 476
V+ +NL Y L L I + + TA IGP+GCGKST+L+ LI G
Sbjct: 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVE 69
Query: 477 RGGEVLLGEHNVL-------------------PNYFEQNQAEAL-----------DLDKT 506
G+V N+ PN F ++ + + D+D+
Sbjct: 70 --GKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDEL 127
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLL 565
V ++ +AA W D++K D L + LSGG++ RL + + V+P +L
Sbjct: 128 VERSLRQAAL-W--DEVK----------DKLKQSGLSLSGGQQQRLCIARAIAVQPEVIL 174
Query: 566 VLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
+DEP + LD S +EE + E K T+I V+H+
Sbjct: 175 -MDEPCSALDPISTLRIEELMHELKEQYTIIIVTHN 209
|
Length = 264 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 1e-08
Identities = 48/196 (24%), Positives = 83/196 (42%), Gaps = 31/196 (15%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489
+ T+ G+ AIIG NG GKSTL K++ G+ +P GE+L+ +H +
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIR 90
Query: 490 -----PNYF---EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
PN + LD L + + R I L D +
Sbjct: 91 MIFQDPNTSLNPRLRIGQILDFP---LRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYP 147
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE-----MLEEAISEYKG-TVIT 595
+L+ G+K R+A + ++ +++ DE LD+ + MLE + E +G + I
Sbjct: 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE--LQEKQGISYIY 205
Query: 596 VSHDRYFVKQIVNRVV 611
V+ +K I ++V+
Sbjct: 206 VTQHIGMIKHISDQVL 221
|
Length = 267 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 1e-08
Identities = 41/173 (23%), Positives = 66/173 (38%), Gaps = 51/173 (29%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKT 506
++ GE I+GPNG GK+T +K++ G P G D
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNG-------------------------DND 56
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
+ + + ID LSGGE R+A +++ +T +
Sbjct: 57 EWDGITPVYKPQYID----------------------LSGGELQRVAIAAALLRNATFYL 94
Query: 567 LDEPTNHLDIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
DEP+ +LDI + AI E K T + V HD + + +R+ +G
Sbjct: 95 FDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEG 147
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 2e-08
Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 100 LENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
LE Y +L +++ V+ GE + + G +G GK+T L+I+A P SG ++
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL-- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
FE V A+++++ AL ++ D++ +
Sbjct: 62 ------------FE---GEDVSTLKPEAYRQQVSYC----AQTPALFGDTVEDNLIFPWQ 102
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ + R A L S L + + S G + R++L + L
Sbjct: 103 IRN--RRPDRAAALDLLARFALPDSIL-----------TKNITELSGGEKQRIALIRNLQ 149
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIISHDRA 317
P +LLLDE T+ LD +E Y+ +Q+V ++ I+HD+
Sbjct: 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
|
Length = 223 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 2e-08
Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 52/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ N+S ++DV++ V+ GE +G+ G+ GAG+T R + G SG +
Sbjct: 264 LEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319
Query: 155 ---IKAKSNMK-----IAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
++ +S IA++ ++ + + ++ E ++
Sbjct: 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIA-ENITL------------------ 360
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
A L+D RK +A+ + + L ++ + + S G
Sbjct: 361 --ASLRRFSRRGLIDR-----RKERAL--------AERYIRRLRIKTPSPEQPIGTLSGG 405
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++ L + L DP +L+LDEPT
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPT 429
|
Length = 500 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 51/228 (22%)
Query: 73 SADEFENKKYSNKQSNTGASSISSGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGV 131
+A K + + G+ LEN+S ++ G T+L ++ +EV+ GE++ + G
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGE 427
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME 191
+GAGKT+ LR +AG SG + ++ + FL Q + T+RE
Sbjct: 428 SGAGKTSLLRALAGLWPWGSGRIS-MPADSALLFLPQRPYLP-QGTLRE----------- 474
Query: 192 IAGKLERVQKAL-----ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
AL D +L+ L V L L L
Sbjct: 475 ----------ALCYPNAAPDFSDAELVAVL-----------HKVGLG-------DLAERL 506
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G Q R++ ++LL P + LDE T+ LD +T
Sbjct: 507 DEEDRWDRVL----SGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
|
Length = 604 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 2e-08
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 55/210 (26%)
Query: 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ E ++ +Y L + V+ GE V LVG +GAGK+T +++ +P SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 155 IKAKSNMK----------IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201
+ +++ +A + Q+ F S+ +R A EE+E A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA------- 450
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
R A A +S L PE G+ G+R V + S
Sbjct: 451 -----------------------RAAHA------HEFISAL-PE-GYDTYLGERGV-TLS 478
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + +L+D +LLLDE T+ LD
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALD 508
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 2e-08
Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 45/236 (19%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+ + ++ +++G+ +GLVG +G+GK+T + +I F Q+
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG----------EIRFDGQD 349
Query: 170 FEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
+ + M + M++ G L + + + + L + Q
Sbjct: 350 I-----DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
R +A + E+G +R FS G + R+++ + L+ P+L+LLD
Sbjct: 405 RVIEA-------------LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD 451
Query: 285 EPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD----RAFLDQLCT----KIVE 328
EPT+ LD ++ L K + + ISHD RA ++ KIVE
Sbjct: 452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507
|
Length = 534 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ GE V + G NGAGKT+ LRI+AG PD+G ++ + + R
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG---------EVLWQGEPI-----RRQ 68
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLLDEFDLLQRKAQAVNLDTL 235
R+E+ ++ G + K +A++++ + D+ L + AQ V L
Sbjct: 69 RDEYHQ----DLLYLGHQPGI-KTELTALENLRFYQRLHGPGDDEALWEALAQ-VGL--- 119
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
GF D V S+G Q R++L ++ L L +LDEP +D +
Sbjct: 120 ----------AGFE----DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
Query: 296 EWLEGYL 302
LE L
Sbjct: 166 ARLEALL 172
|
Length = 204 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 55/217 (25%), Positives = 96/217 (44%), Gaps = 42/217 (19%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--------------- 484
N +L + G+ +IG +G GKSTL++ + LE+P G V++
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80
Query: 485 --------EH-NVLPN--YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
+H N+L + F N A L+LD T + + ++ ++ L+G
Sbjct: 81 RRQIGMIFQHFNLLSSRTVFG-NVALPLELDNTPKDEIKR-----KVTELLALVGL---- 130
Query: 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEY 589
D D S LSGG+K R+A + + +L+ DE T+ LD + E+L+E
Sbjct: 131 GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRL 190
Query: 590 KGTVITVSHDRYFVKQIVNRVVEVKGSNL--QDYAGD 624
T++ ++H+ VK+I + V + L Q +
Sbjct: 191 GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSE 227
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-08
Identities = 84/393 (21%), Positives = 158/393 (40%), Gaps = 95/393 (24%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIIS 313
S G + R+ + LL P+LL+ DEPT LD L + L+ L + ++ I+
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN---MGLLFIT 214
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H+ + + +L ++ + G R E N + + Y T+ L+
Sbjct: 215 HNLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPT---HPY------------TQKLL 257
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV----TIKN 429
N +E + + E +Q+++ FP R + V +KN
Sbjct: 258 N-------------SEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKN 304
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST----LLKLIMGLEKPRGGEV---- 481
+ F T+ GE ++G +G GKST LL+LI GE+
Sbjct: 305 ISF-------------TLRPGETLGLVGESGSGKSTTGLALLRLI-----NSQGEIWFDG 346
Query: 482 ----LLGEHNVLP-----NYFEQNQAEALDLDKTVLETVAE----------AAEDWRIDD 522
L +LP Q+ +L+ VL+ + E AA+ R
Sbjct: 347 QPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQ--REQQ 404
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK--- 579
+ ++ + R + SGG++ R+A + ++ +L++LDEPT+ LD +
Sbjct: 405 VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 580 -EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
+L+ +++ + +SHD + V+ + ++V+
Sbjct: 465 LALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 43/207 (20%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
A+ T+ G A++G NG GKSTL K +MG + G++ + QA
Sbjct: 26 ASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPT-------RQA---- 74
Query: 503 LDKTVLETVAEAAE-DWR----IDDI--------KGLLGRCN-----------FKADMLD 538
L K ++ V ++ E DW ++D+ G L R + DM++
Sbjct: 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVE 134
Query: 539 ---RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKG 591
R++ LSGG+K R+ + + + +++LDEP +D+ ++ +L E E K
Sbjct: 135 FRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGK- 193
Query: 592 TVITVSHDRYFVKQIVNRVVEVKGSNL 618
T++ +H+ V + + V VKG+ L
Sbjct: 194 TMLVSTHNLGSVTEFCDYTVMVKGTVL 220
|
Length = 272 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 54/199 (27%), Positives = 89/199 (44%), Gaps = 23/199 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL----------IMGL 473
+ NL Y + N+ IE+ + TA+IG +GCGKST L+ I GL
Sbjct: 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGL 61
Query: 474 EKPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVA-EAAEDWRIDD 522
+ G +V + L PN F ++ E + + + + E+ + D
Sbjct: 62 VEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVD 121
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+G D L + LSGG++ RL + + LL+LDEPT+ LD S ++
Sbjct: 122 CLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVI 181
Query: 583 EEAISE--YKGTVITVSHD 599
EE + E + ++I V+H+
Sbjct: 182 EELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 57/224 (25%), Positives = 95/224 (42%), Gaps = 56/224 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ + NL F Y+ + + ++ I + + TAIIGP+GCGKST LK + + + G
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG 67
Query: 480 EVLLGEHNVL-------------------PNYFEQNQAE-------------ALDLDKTV 507
V N+ PN F + + L++D V
Sbjct: 68 RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIV 127
Query: 508 LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLV 566
E+ + A+ W D+IK + + LSGG++ RL + + VKP LL
Sbjct: 128 -ESALKDADLW--DEIKHKIHKSALD----------LSGGQQQRLCIARALAVKPKVLL- 173
Query: 567 LDEPTNHLDIPSKEMLEEAISEYK----GTVITVSHDRYFVKQI 606
+DEP LD + +E I + T++ VSH+ + V ++
Sbjct: 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRL 217
|
Length = 261 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 2e-08
Identities = 61/216 (28%), Positives = 97/216 (44%), Gaps = 27/216 (12%)
Query: 428 KNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+N+ F Y+D NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL
Sbjct: 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 487 NVLPNYFEQNQAEALDLDKTV----------LETVAEAAEDWRIDDIKGLLGRCNFKADM 536
V + L V L + A ++ L + K ++
Sbjct: 386 PVTAE----QPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAH-KLEL 440
Query: 537 LDRKVSL--LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD-----IPSKEMLEEAISEY 589
D ++S LS G+K RLA + + +L+LDE D + +L + E
Sbjct: 441 EDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPL-LQEM 499
Query: 590 KGTVITVSH-DRYFVKQIVNRVVEVKGSNLQDYAGD 624
T+ +SH D YF+ +R++E++ L + G+
Sbjct: 500 GKTIFAISHDDHYFIH--ADRLLEMRNGQLSELTGE 533
|
Length = 547 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 49/201 (24%), Positives = 89/201 (44%), Gaps = 27/201 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y ++ ++ I + TA+IGP+GCGKST ++ + + + G
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 485 EHNVLPNYFEQNQAEALDLDKTV-----------LETVAEAAEDWRI-----DDIKGLLG 528
+ ++ + + ++L K V + A RI D+ G++
Sbjct: 73 KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVE 132
Query: 529 RC-------NFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKE 580
+ +D L LSGG++ RL + + VKP +L DEPT+ LD S
Sbjct: 133 NALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIIL-FDEPTSALDPISTA 191
Query: 581 MLEEAISEYKG--TVITVSHD 599
+E+ I K T++ V+H+
Sbjct: 192 RIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.3 bits (138), Expect = 2e-08
Identities = 58/238 (24%), Positives = 101/238 (42%), Gaps = 43/238 (18%)
Query: 97 GVKLENISK-----------SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
G KL++I K + K V + KD+ + + +G+ VG +G GK+T L++I
Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433
Query: 146 QEEPDSGNVIKAKSN-----------MKIAFLSQE---FEVSMSRTVREEFMS-----AF 186
+P G++I S+ KI +SQ+ F S+ ++ S A
Sbjct: 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493
Query: 187 KEEMEIAG-----KLERVQKALESAVDDMDLMGRLLDEFDLLQ-RKAQAVNLDTLDAKVS 240
G + D++ M D +L++ RK D+ VS
Sbjct: 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553
Query: 241 KLMPELGFTA---DDGDRLVAS----FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
K + F + D + LV S S G + R+S+ + ++++P +L+LDE T+ LD
Sbjct: 554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.4 bits (133), Expect = 2e-08
Identities = 50/204 (24%), Positives = 89/204 (43%), Gaps = 26/204 (12%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ K++ Y + + +L E E TA+IGP+GCGKST L+ + +
Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 482 LLGEHNVLPNYFEQNQAEALDLDK--------------TVLETVAEAAE----------D 517
+ GE ++ + ++L K +V + VA + D
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
R+++ D LDR SGG++ R+ + + +++LDEPT+ LD
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPI 181
Query: 578 SKEMLEEAISEYKG--TVITVSHD 599
S +EE + E K T I V+H+
Sbjct: 182 SSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 58/210 (27%), Positives = 89/210 (42%), Gaps = 52/210 (24%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK----LIMGLEKPR-GGEVLL 483
NL Y + +L I + A++GP+GCGKSTLL+ L+ E+ R GEV L
Sbjct: 9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRL 68
Query: 484 GEHNV-------------------LPNYFE-----QNQAEALDLDKTV---------LET 510
N+ PN F N A + L+ V +E
Sbjct: 69 FGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEW 128
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ A W D++K D L+ S LSGG++ RL + + +L++DEP
Sbjct: 129 ALKKAALW--DEVK----------DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 571 TNHLDIPSKEMLEEAISEYKG--TVITVSH 598
T ++D +EE + E K T++ V+H
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTH 206
|
Length = 253 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 51/231 (22%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +++S SY V VLK +T+ + GE V LVG +G+GK+T ++ +P G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 155 ---------IKAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ ++A + QE V S +VRE IA L
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQE-PVLFSGSVRE----------NIAYGLTDTPDEEI 587
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A A+A N + P G+ + G++ S SG
Sbjct: 588 MAA-------------------AKAANAHDFIME----FPN-GYDTEVGEK--GSQLSGG 621
Query: 265 Q-MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
Q R+++ + L++ P +L+LDE T+ LD + + L+ + +++I+H
Sbjct: 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L +V + + KGE V L+G +G GK+T L + G
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-------------- 50
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
L+ +F + + E+ + G L Q AL L
Sbjct: 51 -----ALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL--FQDAL------------LFPH 91
Query: 220 FDLLQRKAQAVNLDTL-DAKVSKLMPELGFTADDG--DRLVASFSSGWQMRMSLGKILLQ 276
+ Q A+ +A+ + L + DG + A+ S G + R++L + LL
Sbjct: 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151
Query: 277 DPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRA 317
P LLLDEP + LD+ +W+ + +P V ++HD
Sbjct: 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196
|
Length = 213 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 45/155 (29%), Positives = 80/155 (51%), Gaps = 20/155 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
NL IE+GE AI G G GK++LL LI+G +P G++ +H+ ++P
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI---KHSGRISFSSQFSWIMPGT 113
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
++N + D+ ++V +A + +DI + N +L LSGG++AR+
Sbjct: 114 IKENIIFGVSYDEYRYKSVVKACQ--LEEDITKFPEKDN---TVLGEGGITLSGGQRARI 168
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAI 586
+ + + K + L +LD P +LD+ + KE+ E +
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCV 203
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 54.0 bits (131), Expect = 3e-08
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 54/202 (26%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI 163
S + LKD+ EV KGE V +VG G+GK++ L + G+ E SG+V S I
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS---I 68
Query: 164 AFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
A++SQE + + T+RE F F E ER +K +++ + DL
Sbjct: 69 AYVSQEPWI-QNGTIRENILFGKPFDE--------ERYEKVIKACALEPDL--------- 110
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQ 276
+++P DGD + S G + R+SL + +
Sbjct: 111 -------------------EILP-------DGDLTEIGEKGINLSGGQKQRISLARAVYS 144
Query: 277 DPDLLLLDEPTNHLDLDTIEWL 298
D D+ LLD+P + +D +
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHI 166
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 3e-08
Identities = 45/183 (24%), Positives = 77/183 (42%), Gaps = 35/183 (19%)
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVL-------- 482
L + + G I GPNGCGKS+L +++ L KP G++
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYM 526
Query: 483 ----LGEHNVLPNYFEQNQAEAL---DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
L + + P+ E + L DL++ +L+ V ++ I G + D
Sbjct: 527 TLGTLRDQIIYPDSSEDMKRRGLSDKDLEQ-ILDNV-------QLTHILEREGGWSAVQD 578
Query: 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVIT 595
+D +LSGGEK R+A + +LDE T+ + + + + E+ T+ +
Sbjct: 579 WMD----VLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFS 634
Query: 596 VSH 598
VSH
Sbjct: 635 VSH 637
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 4e-08
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 51/208 (24%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +N+S Y V +LK ++ + G+ V LVG +G GK+T + ++ +P SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 155 IKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
+ +++ I +SQE V T+ E I GK + + +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQE-PVLFDGTIAE----------NIRYGKPDATDEEV 109
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
E A +KA + + L P+ G+ G+R + S G
Sbjct: 110 EEAA-----------------KKANIHDF------IMSL-PD-GYDTLVGER-GSQLSGG 143
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ + LL++P +LLLDE T+ LD
Sbjct: 144 QKQRIAIARALLRNPKILLLDEATSALD 171
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 4e-08
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 50/228 (21%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK--------- 162
+LK +++ ++ GE +G++G +G+GK+T R++ G P SG+V ++++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 163 -IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
I +L Q+ E+ T+ E ++ F EE + +K +E+A RL +
Sbjct: 411 HIGYLPQDVEL-FDGTIAEN-IARFGEEAD-------PEKVIEAA--------RLAGVHE 453
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ R Q DT + G A+ S G + R++L + L DP L+
Sbjct: 454 LILRLPQG--YDTR-------------IGEGG----ATLSGGQRQRIALARALYGDPFLV 494
Query: 282 LLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
+LDEP ++LD + L + + +V+I+H R KI
Sbjct: 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH-RPSALASVDKI 541
|
Length = 580 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+G+KL+ + KSY G T V+K + +V GE + LVG +G GK+T LR++AG E SG
Sbjct: 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
|
Length = 356 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 4e-08
Identities = 59/219 (26%), Positives = 93/219 (42%), Gaps = 54/219 (24%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMG 472
S +++++N+ Y I RG+ TA+IGP+GCGKST+L+ LI G
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 473 LEKPRGGEVLLGEHNVL-------------------PNYFEQNQAEALDLDKTVLETVAE 513
G VL ++ PN F K++ E +A
Sbjct: 69 CSLK--GRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP----------KSIYENIAF 116
Query: 514 AAEDWRIDDIKG----LLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKPS 562
A RI+ G L+ R KA D L+ LSGG++ RL + +
Sbjct: 117 GA---RINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEP 173
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
++++DEP + LD S +EE + E K T++ V+H+
Sbjct: 174 EVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHN 212
|
Length = 269 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 57/180 (31%), Positives = 84/180 (46%), Gaps = 29/180 (16%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE----- 499
L ++RGE A+IG +G GKSTLL ++ GL+ GEV L L E+ +A+
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQP-LHQMDEEARAKLRAKH 89
Query: 500 --------ALDLDKTVLETV-------AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
L LE V E++ R + K LL + LD + L
Sbjct: 90 VGFVFQSFMLIPTLNALENVELPALLRGESSRQSR-NGAKALLEQLGL-GKRLDHLPAQL 147
Query: 545 SGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKE----MLEEAISEYKGTVITVSHD 599
SGGE+ R+A + F +P +L DEPT +LD + + +L E+ T+I V+HD
Sbjct: 148 SGGEQQRVALARAFNGRPD-VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHD 206
|
Length = 228 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 5e-08
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 100 LENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+EN+S Y G VL++V++ ++ GE + ++G +G+GK+T R+I G P SG V
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 5e-08
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 50/229 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-------- 162
L+ +++ ++ GE + ++G +G+GK+T R+I G P SG+V +++K
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 163 --IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
I +L Q+ E+ TV E ++ F E + +K +E+A +L
Sbjct: 392 KHIGYLPQDVEL-FPGTVAEN-IARFGENAD-------PEKIIEAA--------KLAGVH 434
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+L+ R G+ G A+ S G + R++L + L DP L
Sbjct: 435 ELILRLPD------------------GYDTVIGPG-GATLSGGQRQRIALARALYGDPKL 475
Query: 281 LLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQLCTKI 326
++LDEP ++LD + + L L + + +V+I+H R L KI
Sbjct: 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH-RPSLLGCVDKI 523
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 5e-08
Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 64/232 (27%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------- 154
K G + D + KGE ++G++G+GK+T +R++ EP +G +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ KI + Q+F + T+ + ++ E+ + ER +KALE
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQN--TSLGPELLGWPEQERKEKALELL---- 114
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+L+ + E R S G Q R+ L
Sbjct: 115 ----KLVG------------------------LEEY------EHRYPDELSGGMQQRVGL 140
Query: 271 GKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +PD+LL+DE + LD D ++ L+ L K +V I+HD
Sbjct: 141 ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT---IVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 7e-08
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+ L N +K++ T L ++ E+ +G+ V ++G NGAGK+T L IAG +P SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 153 NV------IKAKSNMKIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + KS K A L++ F+ ++ T E ++ E + +A + ++ L S
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE--LTIE-ENLALA-ESRGKKRGLSS 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A L R F + + L ++ L S G +
Sbjct: 118 A-----LNERRRSSFRERLARLGLGLENRLSDRIGLL------------------SGGQR 154
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
+SL L P +LLLDE T LD
Sbjct: 155 QALSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 7e-08
Identities = 62/266 (23%), Positives = 114/266 (42%), Gaps = 45/266 (16%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++ ++ L + + +L I GE A++GP+G GKSTLL+ + GL G+
Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDK 58
Query: 482 LLGEH-NVLPNYFEQNQAEALDLDK------------------TVLETVAEAAED----W 518
G H +L ++ A D+ K +VLE V A W
Sbjct: 59 SAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 519 R--------IDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
R + L L R ++VS LSGG++ R+A + +++ + +++ D
Sbjct: 119 RTCFSWFTREQKQRALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177
Query: 569 EPTNHLDIPSKEMLEEA---ISEYKG-TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624
EP LD S ++ + I++ G TV+ H + + R+V ++ ++ Y G
Sbjct: 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGS 236
Query: 625 YNYYLEKNLDAREKELEREAELEERA 650
+ + D + + R +EE A
Sbjct: 237 SQQFDNERFDHLYRSINR---VEENA 259
|
Length = 262 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 8e-08
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 64/227 (28%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------------- 155
G VLK + + ++GE + L+G NGAGK+T L + G P SG V+
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGL 63
Query: 156 -KAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + + + F Q F + + V ++ E E+ RV++AL AV
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVE---RRVREALT-AVGASG 119
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L R ++K R+++
Sbjct: 120 LRERPTHCLSGGEKK----------------------------------------RVAIA 139
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
+ PD+LLLDEPT LD E + L + + + +VI +HD
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 9e-08
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 65/225 (28%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179
K+G+ G++G NG GKTT ++I++G+ P+ G+ + E S ++
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEE--------------EPSWDEVLK 141
Query: 180 E----EFMSAFKE----EMEIAGKLERVQ---KALESAVDDMDLMGRLL---DEFDLLQR 225
E + FK+ E+++ K + V K + V LL DE L
Sbjct: 142 RFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV------RELLKKVDERGKLDE 195
Query: 226 KAQAVNLDT-LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + L+ LD +S+L S G R+++ LL+D D D
Sbjct: 196 VVERLGLENILDRDISEL------------------SGGELQRVAIAAALLRDADFYFFD 237
Query: 285 EPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
EPT++LD+ I L + ++++ HD A LD L
Sbjct: 238 EPTSYLDIRQRLNVARLIREL-----AEGKYVLVVEHDLAVLDYL 277
|
Length = 590 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 9e-08
Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 63/241 (26%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK--- 162
VL D+ E+ GE V L G +G+GKTT L +I G G++ + S +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 163 ----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I ++ Q + T R+ VQ ALE L
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQN-----------------VQMALE-----------LQP 111
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
+ + +A ++ +G GD L + S G + R+++ + L+
Sbjct: 112 NLSYQEARERA----------RAMLEAVGL----GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 276 QDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331
P L+L DEPT LD D +E ++ +Q ++I++HD LD + +IV E
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMED 216
Query: 332 G 332
G
Sbjct: 217 G 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSG-------NV 154
SKS K +LK+V+ + K GE ++G +GAGK+T L +AG+ SG +
Sbjct: 18 SKSGK--QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K I ++ Q+ + + TVRE M
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ +N+SK + VL ++ + +GE V ++G +G+GK+T LR I EE SG++I
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
|
Length = 240 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-07
Identities = 42/155 (27%), Positives = 79/155 (50%), Gaps = 20/155 (12%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----------VLPNY 492
+ +E+G+ A+ G G GKS+LL +IMG +P G++ +H+ ++P
Sbjct: 446 SFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI---KHSGRISFSPQTSWIMPGT 502
Query: 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
+ N L D+ +V +A + +DI + K + + ++ LSGG++AR+
Sbjct: 503 IKDNIIFGLSYDEYRYTSVIKACQ--LEEDIALFPEKD--KTVLGEGGIT-LSGGQRARI 557
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPS-KEMLEEAI 586
+ + + K + L +LD P HLD+ + KE+ E +
Sbjct: 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCL 592
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 75/240 (31%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
++ SY G LK + ++ +KGE V L+G NGAGK+T G +P SG V
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIAGKLER 198
++ + + I F + + ++ + TV E+ AF KEE+E +R
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQL-FAPTVEEDV--AFGPLNLGLSKEEVE-----KR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
V++AL +AV ++ + K
Sbjct: 118 VKEAL------------------------KAVGMEGFENKPPH----------------- 136
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ IL P++++LDEPT+ LD I L L K+ + ++I +HD
Sbjct: 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196
|
Length = 275 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 1e-07
Identities = 51/183 (27%), Positives = 82/183 (44%), Gaps = 17/183 (9%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNVLPNYF 493
R + NL I+ G+ A++G +G GK+TLL++I+G +K RG E G+ V N
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV 455
Query: 494 EQNQAEALDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-KVSLLSGGEK 549
+ + T+LE + D ++ +L R +L R K S LS G+K
Sbjct: 456 SALIPGEYEPEFGEVTILEHLRSKTGD--LNAAVEILNRAGLSDAVLYRRKFSELSTGQK 513
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLD------IPSKEMLEEAISEYKGTVITVSHDRYFV 603
R K + + +L++DE HLD + K + E E T+I V+H
Sbjct: 514 ERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARK--ISELAREAGITLIVVTHRPEVG 571
Query: 604 KQI 606
+
Sbjct: 572 NAL 574
|
Length = 593 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316
S G Q R++L + L DPD+LLLDEPT+ LD T + L + +V+++HD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 317 AFLDQLCTKIV 327
+L ++V
Sbjct: 162 DEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 2e-07
Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 95 SSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S V+L NI+ Y + ++++ + ++ G++V LVG +G+GK+T +++AG +P SG
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK---ALESAV-D 208
I F E + R V +A + V + E V D
Sbjct: 535 E---------ILFDGIPRE-EIPREV-------------LANSVAMVDQDIFLFEGTVRD 571
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++ L + + DL++ A D + ++ EL A+ G A+ S G + R+
Sbjct: 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL---AEGG----ANLSGGQRQRL 624
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
+ + L+++P +L+LDE T+ LD +T + ++ L ++ +I++H
Sbjct: 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+L+ I SY + D+T +GE +VG +G+GK+T L +IAG E P SG V+
Sbjct: 1 VRLDKIRFSYGEQPMHFDLT--FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN 58
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ ++ L QE + TV + +++ ++A+E A+
Sbjct: 59 GVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT---AEDRQAIEVALAR 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L G RL S G + R++
Sbjct: 116 VGLAGLEK-------------------------------------RLPGELSGGERQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L ++L++D +LLLDEP LD
Sbjct: 139 LARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++KS+ G + DV+ + KGE L+G +G GK+T LR++AG E+P +G ++
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
|
Length = 377 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 2e-07
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S ++++ ++ Y+ G +L DV+ +++ GE V +VG +G+GK+T LR++ G E P+SG
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 153 NV 154
+V
Sbjct: 509 SV 510
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-07
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 70/216 (32%)
Query: 100 LENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L++I +SY V VLK ++ ++ GE V +VG +G+GK+T + I+ ++P SG
Sbjct: 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-----------EEMEI------AGKLER 198
A + +A L + ++++ RE F F+ + +E+ + +R
Sbjct: 67 VAGQD--VATLDAD---ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR 121
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL-- 256
+ +A E LLQR LG DR+
Sbjct: 122 LLRAQE-----------------LLQR--------------------LGL----EDRVEY 140
Query: 257 -VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ S G Q R+S+ + L+ ++L DEPT LD
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 2e-07
Identities = 50/235 (21%), Positives = 86/235 (36%), Gaps = 46/235 (19%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ ++++ L Y + + GE I+G +G GK+TLLK I G P G
Sbjct: 2 MDKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG 61
Query: 480 EVLLGEHNVLP-------------------NYFEQNQAEALDLDKTVLETVAE------- 513
V + P + QN + L + + + E
Sbjct: 62 TVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 514 --------AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
A+DW L D +D SGG + RL + +V L+
Sbjct: 122 RHYGNIRAEAQDW--------LEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLV 173
Query: 566 VLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGS 616
+DEPT LD+ + ++L + E V+ V+HD + + +R++ +K
Sbjct: 174 FMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQG 228
|
Length = 258 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 2e-07
Identities = 109/565 (19%), Positives = 216/565 (38%), Gaps = 123/565 (21%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRII-AGQEEPDSGNVIKAKSNMKIA 164
+ ++++++ +++GE + +VG +G+GK+ +R++ ++ + + ++
Sbjct: 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
LS++ M + F+E M L V E + + L E +++
Sbjct: 89 ELSEQSAAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
K LD + ++ + R S G + R+ + L P +L+ D
Sbjct: 146 AKRM---LDQVRIPEAQTILS---------RYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 285 EPTNHLD-------LDTIEWLEGYLGKQDVPM--VIISHDRAFLDQLCTKIVETEMGVSR 335
EPT LD L I+ L+ +++ M + I+HD MGV
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQ-----KEMSMGVIFITHD---------------MGV-- 231
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ---------TKDL---INRLGA--GAN 381
V E A + Y + +EQ T+ L + +LGA G +
Sbjct: 232 ---------VAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLD 282
Query: 382 SGRASSAEKKLERLQEEEQIEKP--------FQRKQMKIRFPERG----RSGRSVVTIKN 429
R ++E IE+ Q + + RFP R R R V ++
Sbjct: 283 YPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEK 342
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV- 488
+ F + GE +++G +G GKST + ++ L + +GGE++ +
Sbjct: 343 VSF-------------DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389
Query: 489 -LP-----------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDD-------IKGLLGR 529
L + Q+ +LD +TV +++ E + + LL R
Sbjct: 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLER 449
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEA 585
+ R SGG++ R+ + + +++ DE + LD+ + +L +
Sbjct: 450 VGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDL 509
Query: 586 ISEYKGTVITVSHDRYFVKQIVNRV 610
++ + +SHD V++I +RV
Sbjct: 510 QRDFGIAYLFISHDMAVVERISHRV 534
|
Length = 623 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-07
Identities = 59/217 (27%), Positives = 95/217 (43%), Gaps = 54/217 (24%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLE 474
SV ++ ++ Y L +L I + A IGP+GCGKSTLL+ LI G +
Sbjct: 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAK 77
Query: 475 KPRGGEVLLGEHNVL-------------------PNYFEQNQAEAL-----------DLD 504
G +L + N+ PN F ++ E + +LD
Sbjct: 78 VE--GRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLD 135
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+ V +++ AA W +++K D L K + LSGG++ RL + + +
Sbjct: 136 ELVEDSLRRAA-IW--EEVK----------DKLKEKGTALSGGQQQRLCIARAIAMKPDV 182
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHD 599
L++DEP + LD S +EE E K T+I V+H+
Sbjct: 183 LLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHN 219
|
Length = 274 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
RL S G + R+++G+ LL P LLL+DEP LD + + +LE + +P+
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 310 VIISHD 315
+ +SH
Sbjct: 186 LYVSHS 191
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ K Y GV L VK+GE +G+VG NG GKTT ++I+AGQ P+ N
Sbjct: 1 QLYPDCVKRY-GVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++K Y +DV++++ GE +G+VG +G+GKTT L ++ + PD+G V
Sbjct: 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 55/246 (22%), Positives = 93/246 (37%), Gaps = 65/246 (26%)
Query: 425 VTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ +KN+ + +L + ++ I +GE AIIG G GK+T ++ + L P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 480 EVLLGEHNVLPNYF---EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN----- 531
+ + E+N+ + + +K + + V + +I IK + R
Sbjct: 63 TI---------EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQF 113
Query: 532 -----FKA-----------------------------------DMLDRKVSLLSGGEKAR 551
F+ L R LSGG+K R
Sbjct: 114 AEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRR 173
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLD-IPSKEMLE--EAISEYKGTVITVSHDRYFVKQIVN 608
+A + LV DEPT LD KE+LE + +++ T+I V+HD V +
Sbjct: 174 VALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTK 233
Query: 609 RVVEVK 614
R + K
Sbjct: 234 RTIFFK 239
|
Length = 305 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 41/160 (25%), Positives = 53/160 (33%), Gaps = 48/160 (30%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVL 508
G T I GPNG GKST+L I + LG +A
Sbjct: 20 EGSLTIITGPNGSGKSTILDAI---------GLALGGAQSATRRRSGVKA---------- 60
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL--LSGGEKARLAFCKFM----VKPS 562
C A + + LSGGEK A + +KP
Sbjct: 61 --------------------GCIVAAVSAELIFTRLQLSGGEKELSALALILALASLKPR 100
Query: 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHD 599
L +LDE LD + L EAI E+ VI ++H
Sbjct: 101 PLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHL 140
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 3e-07
Identities = 56/206 (27%), Positives = 89/206 (43%), Gaps = 56/206 (27%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--------------G 479
Y DR + + + + GE I+GPNG GKSTLL LI G + P+G G
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQGYSNDLTLFGRRRGSG 328
Query: 480 EVL--LGEH-------------------NV-LPNYFEQNQAEALDLDKTVLETVAEAAED 517
E + + +H NV L +F +++ + + V + + A+
Sbjct: 329 ETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFF-----DSIGIYQAVSDRQQKLAQQ 383
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDI 576
W L D LS G++ RLA + +VK TLL+LDEP LD
Sbjct: 384 W--------LDILGIDKRTADAPFHSLSWGQQ-RLALIVRALVKHPTLLILDEPLQGLDP 434
Query: 577 PSKEM----LEEAISEYKGTVITVSH 598
++++ ++ ISE + ++ VSH
Sbjct: 435 LNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-07
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 100 LENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ N+S SY VLK+++ E+K+GEK+ L+G +G+GK+T L+++ G +P G +
Sbjct: 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD 62
Query: 158 KSNM---------KIAFLSQE 169
+ I+ L+Q
Sbjct: 63 GVPVSDLEKALSSLISVLNQR 83
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 4e-07
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 65/229 (28%)
Query: 109 GVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158
G+ V + D + +V++GE ++G++G+GK+T +R++ EP G + + A
Sbjct: 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 159 S-----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
KI+ + Q F + RTV E AF E++ K ER ++ALE+ ++L+
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLEN--VAFGLEVQGVPKAEREERALEA----LELV 152
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
G L+ + D+ S G Q R+ L +
Sbjct: 153 G--LEGYA--------------------------------DKYPNELSGGMQQRVGLARA 178
Query: 274 LLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
L DPD+LL+DE + LD D + L+ L K +V I+HD
Sbjct: 179 LANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT---IVFITHD 224
|
Length = 386 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 4e-07
Identities = 43/168 (25%), Positives = 79/168 (47%), Gaps = 24/168 (14%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALD 502
G+ AI+GP G GKSTL+ L+ + P+ G +L+ ++ L +A
Sbjct: 361 GQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL 420
Query: 503 LDKTVLETVAEAAEDWRIDDIKGLLGRC---NF---KADMLDRKV----SLLSGGEKARL 552
++++ + + D ++++ R +F K D D V LSGGE+ RL
Sbjct: 421 FNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRL 480
Query: 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDR 600
A + ++K +L+LDE T+ LD+ ++ ++ A+ E + R
Sbjct: 481 AIARALLKDPPILILDEATSALDVETEAKVKAALDE-------LMKGR 521
|
Length = 588 |
| >gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin, a member of the SMC protein family | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 4e-07
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 40/170 (23%)
Query: 453 TAIIGPNGCGKSTL---LKLIMGLEKP---RGGE----VLLGEHNVLPNYFEQNQAEA-- 500
TAI+GPNG GKS + ++ ++G + RG + + G P N AE
Sbjct: 25 TAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKP----ANFAEVTL 80
Query: 501 -LDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV---SLLSGGEKARLA--- 553
D +++ + +I + +KV SLLSGGEKA A
Sbjct: 81 TFDNSDGRYSIISQG----DVSEI----------IEAPGKKVQRLSLLSGGEKALTALAL 126
Query: 554 -FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTV--ITVSHDR 600
F F V+PS VLDE LD + E + E+ I ++H +
Sbjct: 127 LFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRK 176
|
Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (formerly known as Rad18). Length = 197 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 53/209 (25%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ N++ Y G L ++ ++ GE V LVG +G+GK+T + +I EPDSG ++
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 156 K----------AKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
A ++A +SQ+ F +++ + E A + +++A
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA-------YGRTEQADR-AEIERA 442
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L +A D + +L D +G ++G L S
Sbjct: 443 LAAA-YAQDFVDKLPLGLDT----------------------PIG---ENGVLL----SG 472
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + LL+D +L+LDE T+ LD
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + +SK Y +DV++++ GE +G+VG +G+GKTT L+ I+G+ PD+G V
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 5e-07
Identities = 56/200 (28%), Positives = 92/200 (46%), Gaps = 29/200 (14%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++N+ + Y D NL I++GE IIG NG GKSTL + GL +P+ G+VL
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 483 L-----GEHNVLPNYFE------QNQAEALDLDKTVLETVAEAAEDW---------RIDD 522
+ G+ + L + QN E + +TV E +A E+ R+D
Sbjct: 61 VSGIDTGDFSKLQGIRKLVGIVFQN-PETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDR 119
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+G ++ R LSGG+ +A + L+ DE T+ LD S +
Sbjct: 120 ALAEIGLEKYR----HRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175
Query: 583 EEAISEY--KG-TVITVSHD 599
E I + KG T++ ++H+
Sbjct: 176 LERIKKLHEKGKTIVYITHN 195
|
Length = 274 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 6e-07
Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 27/255 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR----IIAGQEEPDSGN 153
+++E ++K++ L V + GE V L+G +G+GK+T LR +I G + S
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ ++ + L+++ S + T ++ + +L ++ L A+
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANT------GYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
F Q++ + + + +G + V++ S G Q R+++ +
Sbjct: 119 RTCFSWFTREQKQ-----------RALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARA 166
Query: 274 LLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+Q ++L DEP LD ++ ++ L + +V+ H + + C +IV
Sbjct: 167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226
Query: 330 EMGVSRTYEGNYSQY 344
G Y+G+ Q+
Sbjct: 227 RQG-HVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 46/212 (21%), Positives = 76/212 (35%), Gaps = 46/212 (21%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++ L Y R + + GE I+G +G GK+TLL + P GEV
Sbjct: 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRM 67
Query: 486 HNVLPN-------------------YFEQNQAEALDLDKTVLETVAE------------- 513
+ + Q+ + L + + + E
Sbjct: 68 RDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI 127
Query: 514 --AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
A DW L R A +D + SGG + RL + +V L+ +DEPT
Sbjct: 128 RATAGDW--------LERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPT 179
Query: 572 NHLDIPSK----EMLEEAISEYKGTVITVSHD 599
LD+ + ++L + E V+ V+HD
Sbjct: 180 GGLDVSVQARLLDLLRGLVRELGLAVVIVTHD 211
|
Length = 258 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 6e-07
Identities = 51/202 (25%), Positives = 83/202 (41%), Gaps = 48/202 (23%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---- 489
Y + + +++ I + E T IGP+GCGKST+L+ + + G G + L
Sbjct: 18 YGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDV 77
Query: 490 --------------------PNYFE----QNQAEALDLDK------TVLETVAEAAEDWR 519
PN F N A L L++ ++ + A W
Sbjct: 78 YGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALW- 136
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
D++K L K L LSGG++ RL + + +L+LDEP + LD +
Sbjct: 137 -DEVKDKL-----KVSGLS-----LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIAT 185
Query: 580 EMLEEAISEYKG--TVITVSHD 599
+EE + E K T+ V+H+
Sbjct: 186 RRVEELMVELKKDYTIALVTHN 207
|
Length = 261 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 6e-07
Identities = 49/193 (25%), Positives = 90/193 (46%), Gaps = 27/193 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEH-------------NVL 489
L + GE ++G +GCGKST + I+GL K GEV LG+ + +
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDI 100
Query: 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWR--------IDDIKGLLGRCNFKADMLDRKV 541
F Q+ +L+ T+ E +AE + D +K ++ + ++++R
Sbjct: 101 QMIF-QDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYP 159
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVS 597
SGG+ R+ + ++ L++ DEP + LD+ + +L++ E ++I ++
Sbjct: 160 HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIA 219
Query: 598 HDRYFVKQIVNRV 610
HD VK I +RV
Sbjct: 220 HDLAVVKHISDRV 232
|
Length = 331 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 7e-07
Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 29/182 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQA----- 498
N+ I G+ T I+G GCGKS+LL I+G + G+V N FE ++
Sbjct: 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80
Query: 499 ------EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML-----------DRKV 541
+ L+ TV E + + + K + C+ + D+ +R +
Sbjct: 81 VAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGI 139
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEEAISEY----KGTVITV 596
+L SGG++ R+ + + + + ++ LD+P + LDI S +++E I ++ K T++ V
Sbjct: 140 NL-SGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLV 198
Query: 597 SH 598
+H
Sbjct: 199 TH 200
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 8e-07
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +N+S Y+ LKDV++ + KG+ +VG NG+GK+T +++ G E+ SG
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG--- 64
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMG 214
+I + +Q +R+ F+ + + G + + A
Sbjct: 65 ------EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA------------ 106
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
F L + AV D + +VS+ + ++ + D + S G + R+++ +L
Sbjct: 107 -----FGL---ENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVL 157
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
+P +++LDE T+ LD D + L + K ++ ++ I+HD
Sbjct: 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 8e-07
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ + +S S G +LKD++ + + G +VG +GAGK+T +++I +P G++ I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
I + ++ M F K+ +E G + + +K
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-GPMLKGEK--------------- 107
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ V + +G + R V + S G R+S+ + L
Sbjct: 108 -------------------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 277 DPDLLLLDEPTNHLDLDTIEWLE 299
+P++LLLDEPT+ LD + E +E
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIE 171
|
Length = 241 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161
+ +++ V +G+ ++G +G GKTT LR+I GQ PD G ++ N+
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ L Q + V + +E ++ L L S V +M
Sbjct: 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL------LHSTV----MM----- 126
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K +AV L +KLMP + S G R +L + + +P
Sbjct: 127 -------KLEAVGL----RGAAKLMP-------------SELSGGMARRAALARAIALEP 162
Query: 279 DLLLLDEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHD 315
DL++ DEP D T I L LG V V++SHD
Sbjct: 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALG---VTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 8e-07
Identities = 58/250 (23%), Positives = 107/250 (42%), Gaps = 87/250 (34%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E+IS Y LKDV++ V +GE V +VG NG+GK+T +++ G P++G +
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 155 -------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIA 193
++ + M +F + TV+++ AF +EEM
Sbjct: 66 VGGMVLSEETVWDVRRQVGMVFQNPDNQF---VGATVQDDV--AFGLENIGVPREEM--- 117
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL-DTLDAKVSKLMPELGFTADD 252
+ERV +AL V + D L+ + +L
Sbjct: 118 --VERVDQALRQ------------------------VGMEDFLNREPHRL---------- 141
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQ 305
S G + R+++ +L PD+++LDE T+ LD L+T+ L+ ++
Sbjct: 142 --------SGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK---EQK 190
Query: 306 DVPMVIISHD 315
+ ++ I+HD
Sbjct: 191 GITVLSITHD 200
|
Length = 279 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 51/195 (26%), Positives = 81/195 (41%), Gaps = 32/195 (16%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----GGEVLLGEHNVLPN-------- 491
NL+++RGE A++G +G GKS I+GL P GE+LL +LP
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIA 65
Query: 492 YFEQNQAEALDLDKTVLETVAE-AAEDWRI-----DDIKGLLGRCNFKADMLDRKVSL-- 543
QN A L T+ A E R + L+ + D + L
Sbjct: 66 TIMQNPRTAF----NPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKK 121
Query: 544 ----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVIT 595
LSGG R+ ++ L+ DEPT LD+ ++ ++L E + ++
Sbjct: 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILL 181
Query: 596 VSHDRYFVKQIVNRV 610
++HD V +I + V
Sbjct: 182 ITHDLGVVARIADEV 196
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 8e-07
Identities = 57/191 (29%), Positives = 86/191 (45%), Gaps = 61/191 (31%)
Query: 453 TAIIGPNGCGKSTLLKLIMGLEK--PRG---GEVLLGEHNVL------------------ 489
TAIIGP+GCGKST+L+ I + P G++LL + ++
Sbjct: 33 TAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQ 92
Query: 490 -PNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
PN F N++EA ++ ++ L+ VA W D++K
Sbjct: 93 KPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVAL----W--DEVK------- 139
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
D L LSGG++ RL + + VKP +L +DEP + LD S +EE I E K
Sbjct: 140 ---DRLKSNAMELSGGQQQRLCIARTIAVKPEVIL-MDEPASALDPISTLKIEELIEELK 195
Query: 591 G--TVITVSHD 599
T+I V+H+
Sbjct: 196 EKYTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 8e-07
Identities = 61/245 (24%), Positives = 112/245 (45%), Gaps = 44/245 (17%)
Query: 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRS-GRSVVTIKNLE-FGYEDRLLFNRANL 445
AE+++ L E+ IE RK ++ ++P ++ G + + NL G D +
Sbjct: 221 AEREVADLTEDSLIEMMVGRK-LEDQYPRLDKAPGEVRLKVDNLSGPGVND------VSF 273
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----------YF- 493
T+ +GE + G G G++ L+K++ G G V L H V+ Y
Sbjct: 274 TLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYIS 333
Query: 494 EQNQAEALDLDKTVLETVA---------------EAAEDWRIDDIKGLLGRCNFKADMLD 538
E + + L L +V E ++ A E + D L N K ++
Sbjct: 334 EDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF---NIKTPSME 390
Query: 539 RKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
+ + LLSGG + ++A + M +P +L+LDEPT +D+ +K+ + + I+++K ++I
Sbjct: 391 QAIGLLSGGNQQKVAIARGLMTRPK-VLILDEPTRGVDVGAKKEIYQLINQFKAEGLSII 449
Query: 595 TVSHD 599
VS +
Sbjct: 450 LVSSE 454
|
Length = 501 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 9e-07
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L DV++ VK+GE + ++G NG+GK+T +R+I G E +SG +I
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
|
Length = 279 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 9e-07
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 98 VKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K E ++ +Y+ L D+ EVKKG L+G G+GK+T L+ + G +P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V ++ +S T +++ + ++++ + + Q E+ + D+
Sbjct: 62 KV-------------TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ F + + KA+ + + L+ +G + ++ S G R+++
Sbjct: 109 GPQ---NFGIPKEKAEKIAAEKLEM--------VGLADEFWEKSPFELSGGQMRRVAIAG 157
Query: 273 ILLQDPDLLLLDEPTNHLD 291
IL +P++L+LDEPT LD
Sbjct: 158 ILAMEPEVLVLDEPTAGLD 176
|
Length = 288 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 9e-07
Identities = 51/213 (23%), Positives = 83/213 (38%), Gaps = 38/213 (17%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I F D +LT+ G+ A +G NG GKS L + + G GE
Sbjct: 2 SSLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQ 61
Query: 483 LGEHNVLPNYFEQNQ----------------AEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ FEQ Q D +T E + + +D
Sbjct: 62 SQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKD--------- 112
Query: 527 LGRCNFKA------DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
RC A +LDR+ LS GE + C+ ++ LL+LDEP + LD+ S++
Sbjct: 113 PARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172
Query: 581 MLEEAISEYKGTVITVSHDRYFVKQIVNRVVEV 613
L E ++ ++ + ++NR E+
Sbjct: 173 QLAELLA-------SLHQSGITLVLVLNRFDEI 198
|
Length = 490 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 9e-07
Identities = 55/222 (24%), Positives = 98/222 (44%), Gaps = 48/222 (21%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL----------- 469
G + +++++L+ Y D ++ I TA+IGP+GCGKST L+
Sbjct: 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAA 101
Query: 470 -IMGLEKPRGGEVLLGEHNVL------------PNYFEQNQAEAL--------DLDKTVL 508
I G + G ++ N++ PN F ++ E + D++ +L
Sbjct: 102 RIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLL 161
Query: 509 ETVAEAAEDWRIDDIKGLLGRCNFKA-------DMLDRKVSLLSGGEKARLAFCKFMVKP 561
+ + D+ L+ R +A D LD LSGG++ RL + +
Sbjct: 162 ARLLGRDDKDAEDE---LVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218
Query: 562 STLLVLDEPTNHLD--IPSK--EMLEEAISEYKGTVITVSHD 599
++++DEP + LD SK +++EE EY TV+ V+H+
Sbjct: 219 PEVILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTHN 258
|
Length = 305 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 1e-06
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 38/216 (17%)
Query: 413 RFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
FPE G V+ ++NL G + + T+ GE I G G G++ L + +
Sbjct: 250 LFPEPPEEGIGEPVLEVRNLSGGGK----VRDVSFTVRAGEILGIAGLVGAGRTELARAL 305
Query: 471 MGLEKPRGGEVLL-GEHNVLPNYFEQNQA-----------EALDLDKTVLETVA------ 512
G GE+LL G+ + + + +A E L LD ++ E +
Sbjct: 306 FGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365
Query: 513 --------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
E + L K ++ + LSGG + ++ +++ +
Sbjct: 366 FSRRGLIDRRKERALAERYIRRL---RIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKV 422
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEY--KG-TVITVS 597
L+LDEPT +D+ +K + I E +G ++ +S
Sbjct: 423 LILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMIS 458
|
Length = 500 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 1e-06
Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 34/200 (17%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
NLT+ GE A++G NG GKSTL+K++ G+ +P G + + NY + + A L
Sbjct: 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI----NYNKLDHKLAAQL 80
Query: 504 -------------DKTVLETV-----------AEAAEDWRIDDIKG--LLGRCNFKADML 537
+ TVLE + DWR ++ +L R K D L
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-L 139
Query: 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVI 594
D KV+ LS K L K ++ + ++++DEPT+ L + L +++ + ++
Sbjct: 140 DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIV 199
Query: 595 TVSHDRYFVKQIVNRVVEVK 614
+SH +++I +R +K
Sbjct: 200 YISHKLAEIRRICDRYTVMK 219
|
Length = 510 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 63/221 (28%), Positives = 89/221 (40%), Gaps = 64/221 (28%)
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI----------AF 165
++ EV+ GE + LVG NGAGK+T L +AG P SG++ A ++ A+
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
LSQ+ F M + L Q + +
Sbjct: 74 LSQQ--------QTPPFA------MPVFQYLTLHQPDKTRTEAVASALNEV--------- 110
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMRMSLGKILLQ-DPD---- 279
A+A+ LD KL R V S G WQ R+ L ++LQ PD
Sbjct: 111 -AEALGLD------DKL-----------GRSVNQLSGGEWQ-RVRLAAVVLQVWPDINPA 151
Query: 280 --LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
LLLLDEP N LD+ L+ L + Q + +V+ SHD
Sbjct: 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 1e-06
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 64/209 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+KL +I+ Y + + D+T V++GE+V ++G +GAGK+T L +IAG P SG++
Sbjct: 2 LKLTDITWLYHHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN 59
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKE---------EMEIA-G-----KLERVQKA 202
+ S+ VSM F+E I G KL Q+
Sbjct: 60 GQDHTTTPPSRR-PVSM----------LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR- 107
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ L A+ + ++ L RL S
Sbjct: 108 ------------------EKLHAIARQMGIEDL-----------------LARLPGQLSG 132
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R++L + L+++ +LLLDEP + LD
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 1e-06
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 39/203 (19%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495
+L G+ +IIG +G GKST L+ I LEKP G +++ + ++
Sbjct: 25 SLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84
Query: 496 NQAEALDL-------------DKTVLETVAEA--------AEDWRIDDIKGLLGRCNFKA 534
NQ L TVLE V EA ++ R +K L +
Sbjct: 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVK-YLAKVGIDE 143
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA------ISE 588
+ LSGG++ R++ + + +L+ DEPT+ LD E++ E ++E
Sbjct: 144 RAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALD---PELVGEVLRIMQQLAE 200
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T++ V+H+ F + + + V+
Sbjct: 201 EGKTMVVVTHEMGFARHVSSHVI 223
|
Length = 257 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 1e-06
Identities = 71/301 (23%), Positives = 128/301 (42%), Gaps = 51/301 (16%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
Q ++ E+G S ++ L G +D A+L IE GE I+G +G GKST+++
Sbjct: 19 QRAFKYIEQGLSKEQILEKTGLSLGVKD------ASLAIEEGEIFVIMGLSGSGKSTMVR 72
Query: 469 LIMGLEKPRGGEVLLGEHN-------------------VLPNYFEQNQAEALDLDKTVLE 509
L+ L +P G+VL+ + V ++ LD +E
Sbjct: 73 LLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGME 132
Query: 510 TVAEAAEDWRIDDIKGL--LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567
AE+ R + L +G N+ D LSGG + R+ + + +L++
Sbjct: 133 LAGINAEERREKALDALRQVGLENYAHSYPDE----LSGGMRQRVGLARALAINPDILLM 188
Query: 568 DEPTNHLD-IPSKEMLEEAI---SEYKGTVITVSHDRYFVKQIVNR--------VVEVKG 615
DE + LD + EM +E + ++++ T++ +SHD +I +R VV+V
Sbjct: 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGT 248
Query: 616 SN--LQDYAGDYNYYLEKNLDARE----KELEREAE--LEERAPKIKAKSKMSKAEKEAR 667
+ L + A DY + +D + K++ R L + P +S + + E R
Sbjct: 249 PDEILNNPANDYVRTFFRGVDISQVFSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDR 308
Query: 668 K 668
+
Sbjct: 309 E 309
|
Length = 400 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 33/143 (23%), Positives = 56/143 (39%), Gaps = 30/143 (20%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNYFEQNQAEA 500
+ ++ GE ++G G G STLLK + + G++ E+ E
Sbjct: 27 SGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEF-AEKYPGEI 85
Query: 501 L-----DLDK---TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552
+ D+ TV ET+ A RC + V +SGGE+ R+
Sbjct: 86 IYVSEEDVHFPTLTVRETLDFAL-------------RCKG-----NEFVRGISGGERKRV 127
Query: 553 AFCKFMVKPSTLLVLDEPTNHLD 575
+ + +V +++L D T LD
Sbjct: 128 SIAEALVSRASVLCWDNSTRGLD 150
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN++ +Y G VLKDV++ + G+KV +VG +G+GK+T LR++ + SG++
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA 157
++++ S + +L+ + EV+ GE ++G NG+GK+T +AG+E E G V
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER--VQKALESAVDDMDLMGR 215
++ E+S E AF+ +EI G + +Q AL +
Sbjct: 64 GKDL--------LELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ--E 113
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVAS----FSSGWQMRMSL 270
LD FD D ++ K++ L MPE D L S FS G + R +
Sbjct: 114 PLDRFDF---------QDLMEEKIALLKMPE--------DLLTRSVNVGFSGGEKKRNDI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE 296
++ + +P+L +LDE + LD+D ++
Sbjct: 157 LQMAVLEPELCILDESDSGLDIDALK 182
|
Length = 248 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-06
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 108 KGVTV---LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+G++V ++DV++EV+ GE VG+ G+ G G+T + G P SG +
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 53/237 (22%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++ +N+S +Y+ T + DV E ++G+ +VG G+GK+T ++ I +P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 153 NV----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERVQKALESAV 207
V I K ++ R VR+ F+ E ++ E V
Sbjct: 63 TVTVDDITITHKTKDKYI---------RPVRKRIGMVFQFPESQL----------FEDTV 103
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS----SG 263
+ + G K +NLD + +L+ +LGF+ D V S S SG
Sbjct: 104 EREIIFGP----------KNFKMNLDEVKNYAHRLLMDLGFSRD-----VMSQSPFQMSG 148
Query: 264 WQMR-MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
QMR +++ IL +PD+++LDEPT LD + L+ ++ ++++SHD
Sbjct: 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
|
Length = 286 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+++L V VK+GE + L+G +G+GK+T L I+AG ++ SG V + + Q
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV---------SLVGQP 73
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--------AVDDMDLMGRLLDEFD 221
+ EE + + V +S A+++++L L E
Sbjct: 74 -------------LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGKILLQDP 278
Q + A L+ +LG G RL A S G Q R++L + P
Sbjct: 121 -RQSRNGAK----------ALLEQLGL----GKRLDHLPAQLSGGEQQRVALARAFNGRP 165
Query: 279 DLLLLDEPTNHLDLDT 294
D+L DEPT +LD T
Sbjct: 166 DVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 65/238 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------QEEPD 150
+++NI+K++ GV L +V+ +V+ GE V L G NGAGK+T +++++G E
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 151 SGNVIKAKSNMK------IAFLSQEFEVSMSRTVREE-FMSAFKEEMEIAGKLERVQKAL 203
G ++A N++ IA + QE + +V E F+ E+ G
Sbjct: 67 EGEELQAS-NIRDTERAGIAIIHQELALVKELSVLENIFLG---NEITPGGI-------- 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
MD +D + +AQ KL+ +L + V + G
Sbjct: 115 ------MD--------YDAMYLRAQ------------KLLAQLKLDINPATP-VGNLGLG 147
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISH 314
Q + + K L + LL+LDEPT L LD I L+ + + ISH
Sbjct: 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK----AHGIACIYISH 201
|
Length = 506 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 54/247 (21%), Positives = 91/247 (36%), Gaps = 41/247 (16%)
Query: 405 FQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPN 459
K S ++ +KNL ++++ + N + T E+ + IIG +
Sbjct: 2 MDYFMKKKLKVPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNS 61
Query: 460 GCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD---------LDKTVLET 510
G GKSTL+ GL K + G + +G+ + L + V
Sbjct: 62 GSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV-SM 120
Query: 511 VAEAAE-----DWRIDDI------------------KGLLGRCNFKADMLDRKVSLLSGG 547
V + E D DI K L + L+R LSGG
Sbjct: 121 VFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGG 180
Query: 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHDRYFVK 604
+K R+A + +L+ DEPT LD + + + I + K TV ++H V
Sbjct: 181 QKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL 240
Query: 605 QIVNRVV 611
++ + V+
Sbjct: 241 EVADEVI 247
|
Length = 320 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 54/175 (30%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAKSNMKIAFLSQEFEVSMSRTVR 179
L+G +G GKTT LR++AG E+PDSG+++ I + Q + + TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 180 EEFMSAFKEEMEIAGKLE---RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236
E AF +M + E RV +AL V L+
Sbjct: 61 ENV--AFGLKMRKVPRAEIKPRVLEALRL------------------------VQLEEF- 93
Query: 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
DR S G Q R++L + L+ P +LLLDEP + LD
Sbjct: 94 ----------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 3e-06
Identities = 47/185 (25%), Positives = 73/185 (39%), Gaps = 42/185 (22%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
G+ A++G NG GKSTLLK++ G +P G +L+ F + AL
Sbjct: 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRF-ASTTAALAAG 80
Query: 505 KTV----LETVAE--AAEDWRIDDIKGLLGRCNFKADMLDR------------------- 539
+ L V E AE+ LG+ K +++R
Sbjct: 81 VAIIYQELHLVPEMTVAENL-------YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID 133
Query: 540 ---KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVI 594
+ LS G++ + K + + + ++ DEPT+ L E L I E + G VI
Sbjct: 134 PDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVI 193
Query: 595 T-VSH 598
VSH
Sbjct: 194 LYVSH 198
|
Length = 501 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 3e-06
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
+L+D++ ++ G L+G NGAGK+T L+ +AG + G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGG-------------APRGA 60
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA--------VDDMDLMGRLLDEFDL 222
V+ T+ E ++A A +L R++ L A ++ L+GR
Sbjct: 61 RVTGDVTLNGEPLAAID-----APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPH---- 111
Query: 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------ 276
R+A A+ + + + G TA G R V + S G R+ ++L Q
Sbjct: 112 -ARRAGALTHRDGEI-AWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHD 168
Query: 277 ---DPDLLLLDEPTNHLDL 292
P LLLDEPT LDL
Sbjct: 169 AAQPPRYLLLDEPTAALDL 187
|
Length = 272 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 3e-06
Identities = 49/212 (23%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GE 480
++ +K + + + +L + GE + G NG GKSTL+K++ G+ P G GE
Sbjct: 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGE 59
Query: 481 VLLGEHNVLPNYFEQNQAE---------ALDLDKTVLETVAEAAE----DWRIDD----- 522
+ + + + L + +V E + E R+
Sbjct: 60 IYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL 119
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
K LL AD + R V GG++ + K + K + LL+LDEP++ L E+
Sbjct: 120 RAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEI 179
Query: 582 LEEAISEYKG---TVITVSHDRYFVKQIVNRV 610
L + I + K + +SH VK + + +
Sbjct: 180 LLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K++NI K + + L +V+ E+ +GE + ++G G+GKTT + + PD+G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERV-QKA----LESA 206
+ + K ++E E + + +++ K+ EI ++ V Q A E
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 207 VDDMDLMGRL---LDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSS 262
++ + G + + + + +R A+ + L LD + P EL S
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL--------------SG 168
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLE--GYLGKQDVPMVIISHD 315
G + R++L IL +PD L+ DEPT LD E LE L KQ +++++HD
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 51/228 (22%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
+FEN K NK SN + K+ + ++ + T+L VT GE + ++G +G+G
Sbjct: 50 KFENMK--NKGSNI-KRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSG 106
Query: 136 KTTQLRIIAGQEEPDS--GNVIK-----AKSNMK-IAFLSQEFEVSMSRTVREEFMSAFK 187
K+T L +AG+ + ++ G ++ K +K F++Q+ + TVRE + F
Sbjct: 107 KSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLV--FC 164
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
+ + L + +K A++V + ELG
Sbjct: 165 SLLRLPKSLTKQEKI----------------------LVAESV------------ISELG 190
Query: 248 FTADD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
T + G+ + S G + R+S+ +L +P LL+LDEPT+ LD
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 4e-06
Identities = 47/193 (24%), Positives = 84/193 (43%), Gaps = 21/193 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +T KNL Y+ R + +LT+ GE ++GPNG GK+T +++G+ G ++
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61
Query: 483 LGEHNV--LP---------NYFEQNQA-----EALDLDKTVLETVAEAAEDWRIDDIKGL 526
+ + ++ LP Y Q + D VL+ + + + R D L
Sbjct: 62 IDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANEL 121
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----IPSKEML 582
+ + + D LSGGE+ R+ + + ++LDEP +D I K ++
Sbjct: 122 MEEFHI-EHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRII 180
Query: 583 EEAISEYKGTVIT 595
E G +IT
Sbjct: 181 EHLRDSGLGVLIT 193
|
Length = 241 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-06
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
++DV++++ KGE +G+ G+ GA +T + + G E +G + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN---------- 313
Query: 173 SMSRTVREEFMSAF---KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK--- 226
+ E F EE G + S + ++ ++ LL
Sbjct: 314 --NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIR---NYKNKVGLLDNSRMK 368
Query: 227 --AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
Q V +D++ K ++G S S G Q ++ +G+ LL P++L+LD
Sbjct: 369 SDTQWV-IDSMRVKTPGHRTQIG-----------SLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 285 EPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
EPT +D+ I L L K+D ++IIS
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448
|
Length = 491 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (115), Expect = 4e-06
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 33/210 (15%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRG----GEVLL 483
NL G+ + + ++ ++ T+++GP G GK+T L+ + + +K G G+VLL
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLL 85
Query: 484 GEHNVL------------------PNYFE----QNQAEALDLDKTVLETVAEAAEDWRID 521
G ++ PN F N + K V R+
Sbjct: 86 GGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLT 145
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ G + D L LSGG++ L + + +L+LDEPT+ LD + E
Sbjct: 146 EV----GLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEK 201
Query: 582 LEEAISEY--KGTVITVSHDRYFVKQIVNR 609
+EE I + TVI V+H+ +I +R
Sbjct: 202 IEEFIRSLADRLTVIIVTHNLAQAARISDR 231
|
Length = 276 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 4e-06
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 63/180 (35%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
L +++ VK G L+G +GAGKTT L ++AG++ +G + + I + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--AGVI---TGEILIN--GRPLDK 75
Query: 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALE-SAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ R+ + + E+ ++ V++AL SA LL + QRK
Sbjct: 76 NFQRS------TGYVEQQDVHSPNLTVREALRFSA---------LLRGLSVEQRK----- 115
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G L P +L LDEPT+ LD
Sbjct: 116 -----------------------------------RLTIGVELAAKPSILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 46.6 bits (110), Expect = 5e-06
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181
GE + +VG G+GKTT R +A + P G VI + + ++ + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGEDILEEVLDQLLLIIVGGKK 58
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232
+ + + +A L +K + +LDE L Q L
Sbjct: 59 ASGSGELRLRLA--LALARKLKPDVL--------ILDEITSLLDAEQEALL 99
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 53/193 (27%), Positives = 81/193 (41%), Gaps = 49/193 (25%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-GGEVLLGEHNVL--------- 489
+L I TA IGP+GCGKST L+ + M ++ R G++ L ++
Sbjct: 39 DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98
Query: 490 ----------PNYFEQNQAEALDLDKTVLETVAE-------AAEDWRIDDI--KGL--LG 528
PN F K++ E VA A +D+I L G
Sbjct: 99 RARVGMVFQKPNPFP----------KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAG 148
Query: 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAIS 587
D L + LSGG++ RL + + V P +L +DEP + LD + +EE I
Sbjct: 149 LWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL-MDEPCSALDPIATAKVEELID 207
Query: 588 EYKG--TVITVSH 598
E + T++ V+H
Sbjct: 208 ELRQNYTIVIVTH 220
|
Length = 267 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 94 ISSGVKLENISKSYKGVTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
I + +++ N+SK+++ T L K V++ +++G+ + ++G NG+GK+T +++A
Sbjct: 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 145 GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
G EP SG ++ ++ + F F R + ++ ++ + I L+
Sbjct: 61 GMIEPTSGEIL--INDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD----FPL 114
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
D++ R F+ L+ +G D + + G
Sbjct: 115 RLNTDLEPEQRRKQIFETLRM--------------------VGLLPDHANYYPHMLAPGQ 154
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R++L + L+ P +++ DE LD+
Sbjct: 155 KQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 6e-06
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL+++ E+K G+ V +VG +GAGKTT LR+I G ++ + S +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK-----VEVP 451
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ ++S + E+ F E + + L S D++ +L+
Sbjct: 452 KNTVSALIPGEYEPEFGEVT--------ILEHLRSKTGDLNAAVEILNR----------- 492
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
+ L + + + S+G + R L K+L + P++LL+DE HL
Sbjct: 493 ---------AGLSDAVLYRRKFSE-----LSTGQKERAKLAKLLAERPNVLLIDEFAAHL 538
Query: 291 DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322
D T + + + + +++++H + L
Sbjct: 539 DELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574
|
Length = 593 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 6e-06
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 28/219 (12%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+L+ I K++ GV L V G + LVG NGAGK+T ++++ G D+G+
Sbjct: 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS----- 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I +L +E + ++ +E + +E+ + +L + + +GR
Sbjct: 61 ----ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL---------TIAENIFLGR--- 104
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EF + ++ + A+ KL+ L D+LV S G Q + + K+L +
Sbjct: 105 EF---VNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSFES 160
Query: 279 DLLLLDEPTNHL-DLDTIEWLE--GYLGKQDVPMVIISH 314
++++DEPT+ L D +T L Q +V ISH
Sbjct: 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
|
Length = 501 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 49.2 bits (117), Expect = 8e-06
Identities = 58/236 (24%), Positives = 108/236 (45%), Gaps = 39/236 (16%)
Query: 392 LERLQE--EEQIEKPFQRKQMK--IRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANL 445
+ERL+E E + E P+Q ++ +P RGR V +N Y + L + N+
Sbjct: 1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGR-----VEFRNYCLRYREDLDLVLRHINV 1307
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL--------LGEHNVL-------- 489
TI GEK I+G G GKS+L + + + GE++ +G H++
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ 1367
Query: 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL----L 544
P F + LD + E W ++ L + D LD + + L
Sbjct: 1368 DPVLFSGSLRMNLDPFSQYSDE-----EVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
Query: 545 SGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI-SEYKG-TVITVSH 598
S G++ + + +++ + +LVLDE T +D+ + +++ I ++++ TV+T++H
Sbjct: 1423 SVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 8e-06
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 40/180 (22%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+L+DV+ V +G+ ++G G+GK+T L+ + Q E G V +S IA++ Q+
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS---IAYVPQQAW 731
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ M+ TVR + F EE D L A AV
Sbjct: 732 I-MNATVRGNIL-FFDEE----------------------------DAARL----ADAVR 757
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ L+A +++L G + G++ V + S G + R+SL + + + D+ LLD+P + LD
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+K+EN+S SY LK+V++E+ +GE V ++G NG+GK+T +I+ G +P SG +
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
|
Length = 271 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 1e-05
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K N++ Y L D+ ++++ + L+G +G GK+T LR +
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-------------R 50
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
N KIA + E+ + V+ + + A ++ + + ++ ++S +++ +L
Sbjct: 51 MNDKIAKIDGLVEIE-GKDVKNQDVVALRKNVGMV--FQQPNVFVKSIYENISYAPKL-- 105
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
N D +A V + ++G + D+L + S G Q R+ + + L
Sbjct: 106 -------HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
P LLLLDEPT+ LD + +E L + ++ M++++H+
Sbjct: 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 425 VTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y+ R ++ N T+ G+ A +G +GCGKST+LKLI L P G++
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 482 LLGE-HNV 488
++ + HN+
Sbjct: 443 IINDSHNL 450
|
Length = 1466 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 48.4 bits (115), Expect = 1e-05
Identities = 59/268 (22%), Positives = 118/268 (44%), Gaps = 36/268 (13%)
Query: 384 RASSAEKKLERLQEEEQIE-KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
+AS + K+L E++E +R+ +K P G S +T+ N F + +
Sbjct: 602 QASVSLKRLRIFLSHEELEPDSIERRTIK---PGEGNS----ITVHNATFTWARDLPPTL 654
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLPNYFEQNQAE 499
N +I G A++G GCGKS+LL ++ ++K G + G +P +Q +
Sbjct: 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVP---QQAWIQ 711
Query: 500 ALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKVSLLSGGEK 549
L + +L +A + + +L C D+ + K LSGG+K
Sbjct: 712 NDSLRENIL--FGKALNEKY---YQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQK 766
Query: 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG-----TVITVSHDRYFVK 604
R++ + + + + + D+P + +D + + E + +G T I V+H ++
Sbjct: 767 QRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLP 826
Query: 605 QIVNRVVEVKGSNLQDYAGDYNYYLEKN 632
Q V+ ++ + G + + G Y L+++
Sbjct: 827 Q-VDVIIVMSGGKISE-MGSYQELLQRD 852
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-05
Identities = 51/230 (22%), Positives = 87/230 (37%), Gaps = 40/230 (17%)
Query: 419 RSGRSVVTIKNLEFGY----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+++I+NL + + IE GE A++G +G GKS I+GL
Sbjct: 1 MMTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL 60
Query: 475 KPRG-----GEVLLGEHNVLPNYFE---------------QNQAEALDLDKTVLETVAEA 514
G +L ++L E Q +L+ T+ + +AE
Sbjct: 61 PSPAAAHPSGSILFDGEDLL-AASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 515 --------AEDWRIDDIKGLLGRCNF--KADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
R LL LD LSGG++ R+ + L
Sbjct: 120 LRLHRGLSRAAAR-ARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDL 178
Query: 565 LVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
L+ DEPT LD+ + ++L+E +E ++ ++HD V++ +RV
Sbjct: 179 LIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRV 228
|
Length = 534 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 VKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++LEN+S + G +LKD+++E+K G+++ + G +G GK++ R +AG SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 157 AKSNMKIAFLSQ 168
+ FL Q
Sbjct: 61 P-EGEDLLFLPQ 71
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 62/224 (27%)
Query: 128 LVGVNGAGKTTQLRIIA----GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
+VG NGAGKTT + + G+ P+S K L +E EV V+ F
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNS------KGGAHDPKLIREGEVRAQ--VKLAFE 78
Query: 184 SAFKEEMEIAGKLERVQKALESAV----DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
+A ++ I L LE+ + + + L
Sbjct: 79 NANGKKYTITRSLA----ILENVIFCHQGESN---------WPLLD-----MRGRCSG-- 118
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW-- 297
G++++AS +R++L + + +L LDEPT +LD + IE
Sbjct: 119 -------------GEKVLASLI----IRLALAETFGSNCGILALDEPTTNLDEENIEESL 161
Query: 298 ---LEGYLGKQDVPMVIISHDRAFLDQLCTKIVE---TEMGVSR 335
+E +++ +++I+HD +D I SR
Sbjct: 162 AEIIEERKSQKNFQLIVITHDEELVDAA-DHIYRVEKDGRQKSR 204
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 39/144 (27%), Positives = 69/144 (47%), Gaps = 27/144 (18%)
Query: 479 GEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G++LL ++ L N F E + + ++ E + ED +D+K C
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRA---CK 1333
Query: 532 FKA---------DMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
F A + D V LSGG+K R+A + +++ +L+LDE T+ LD S
Sbjct: 1334 FAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNS 1393
Query: 579 KEMLEEAISEYKG----TVITVSH 598
++++E+ I + K T+IT++H
Sbjct: 1394 EKLIEKTIVDIKDKADKTIITIAH 1417
|
Length = 1466 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++LEN+S SY G L+++ +KKGE +G++G NG+GK+T + G P G V+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
|
Length = 274 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 2e-05
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
D+ +K+GE + LVG +G+GK+ I G P +++ +I +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGL-----TQTSGEILLDGRPLLPLS 58
Query: 175 SR-----TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
R T+ + +AF + ++L L+ +A
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSK---------QARALILEALEA 109
Query: 230 VNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
V L +V K P +L S G R+ + LL +P L+ DEPT
Sbjct: 110 VGLPD-PEEVLKKYPFQL--------------SGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 289 HLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL----DQLCT----KIVE 328
LD+ ++ L +++I+HD + D++ +IVE
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 80/269 (29%)
Query: 94 ISSGVKLENISKSY--------------------KGVTVLKDVTWEVKKGEKVGLVGVNG 133
++ V ++N++K Y K L D++ + +G+ +GLVG+NG
Sbjct: 1 MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGING 60
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T II G P G V + EVS+ + I+
Sbjct: 61 SGKSTLSNIIGGSLSPTVGKVDRNG------------EVSV---------------IAIS 93
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
L +E+ M MG +RK ++ + P++ ++ G
Sbjct: 94 AGLSGQLTGIENIEFKMLCMG--------FKRK-----------EIKAMTPKIIEFSELG 134
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLG 303
+ + V +SSG + ++ + +PD+L++DE + D LD I +
Sbjct: 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK---- 190
Query: 304 KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+Q+ + +SH+ + Q CTKI E G
Sbjct: 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219
|
Length = 264 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANL--------TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++NL + R F R + T+ G+ AIIG NG GKSTL K++ G+ +P
Sbjct: 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66
Query: 478 GGEVLLGEH 486
GE+L+ +H
Sbjct: 67 SGELLIDDH 75
|
Length = 267 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 67/273 (24%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+K+E ++ +Y G LK + +KKGE ++G NGAGK+T + + G +P SG +
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 155 ------------IKAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
+K + ++ + F Q F S+ + V ++ E E+ +RV
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR---KRV 122
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
AL+ + L D+
Sbjct: 123 DNALKR-------------------------------TGIEHLK----------DKPTHC 141
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ +L+ +P +L+LDEPT LD + ++ L + + ++I +HD
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
+ C + + G +GN + EK
Sbjct: 202 IDIVPLYCDNVFVMKEGRV-ILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 3e-05
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVS 173
DV++ +++GE +G+ G+ GAG+T ++ + G GNV + I +Q
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233
++ V E+ ++ I L V K + +V L F R A L
Sbjct: 338 IA-MVPED-----RKRHGIVPILG-VGKNITLSV---------LKSFCFKMRIDAAAELQ 381
Query: 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD 293
+ + + +L + S G Q + L K+LL +P +L+LDEPT +D+
Sbjct: 382 IIGSAIQRL----KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
Query: 294 T---IEWLEGYLGKQDVPMVIISHDRA 317
I L L ++ V ++++S + A
Sbjct: 438 AKYEIYKLINQLAQEGVAIIVVSSELA 464
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ +++S +Y L D+++ + +G L+G NG+GK+T ++I G PD
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N KI T+ + + +E++ I + Q + DD+
Sbjct: 64 ----NSKITVDGI--------TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV----- 106
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
F L R AV + V ++ ++G D D A+ S G + R+++ IL
Sbjct: 107 ---AFGLENR---AVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILA 159
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+P +++LDE T+ LD L I L+ K ++ ++ I+HD
Sbjct: 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLK---KKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 66/247 (26%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++EN+S Y VLK+V+++VK GEK+G+VG GAG
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAG-------------------- 46
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK------LERVQKALESAVDD 209
KS + +A F+ A + ++EI G LE ++ +L D
Sbjct: 47 --KSTLILALFR--------------FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90
Query: 210 MDL-MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L G + NLD D + + ++ G L S G + +
Sbjct: 91 PTLFSGTI------------RSNLDPFDEYSDEEIYGALRVSEGGLNL----SQGQRQLL 134
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD-RAFLDQLCTK 325
L + LL+ P +L+LDE T +D T ++ + + + ++ I+H R +D K
Sbjct: 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDK 192
Query: 326 IVETEMG 332
I+ + G
Sbjct: 193 ILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 75/321 (23%)
Query: 98 VKLENISKSYK----GVTVLKDVTW----------------EVKKGEKVGLVGVNGAGKT 137
VK E+++K YK LKD+ + EV +GE VG++G+NG+GK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
T +IAG P+ G V S IA S + G+L
Sbjct: 65 TLSNLIAGVTMPNKGTVDIKGSAALIAISSG-----------------------LNGQL- 100
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG---D 254
+ +++++L G ++ L ++ K+ +++PE+ AD G
Sbjct: 101 -------TGIENIELKGLMMG----LTKE-----------KIKEIIPEIIEFADIGKFIY 138
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-TIEWLE--GYLGKQDVPMVI 311
+ V ++SSG + R+ + +PD+L++DE + D T + L+ +Q +
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198
Query: 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIE--SQYAAWEKQQREIEQT 369
ISH + + CTK + G + Y G+ + V +++ +Q + E++ EQ
Sbjct: 199 ISHSLSQVKSFCTKALWLHYGQVKEY-GDIKEVVDHYDEFLKKYNQMSVEERKDFREEQI 257
Query: 370 KDLINRLGAGANSGRASSAEK 390
+ L +GR +K
Sbjct: 258 SQFQHGLLQEDQTGRERKRKK 278
|
Length = 549 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 4e-05
Identities = 53/253 (20%), Positives = 108/253 (42%), Gaps = 49/253 (19%)
Query: 94 ISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+ + ENI Y + VL ++ ++K GE +G+VG +G+GK+T +++ P
Sbjct: 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 152 GNVIKAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKA 202
G V+ ++ I A+L ++ V + SR++R+ IA L
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD----------NIA--LCNPGAP 559
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + L G +F + G+ + G++ S
Sbjct: 560 FEHVIHAAKLAGAH--DFISELPQ--------------------GYNTEVGEKGAN-LSG 596
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320
G + R+++ + L+ +P +L+ DE T+ LD ++ + + + + ++II+H + +
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 321 QLCTKIVETEMGV 333
C +I+ E G
Sbjct: 657 A-CDRIIVLEKGQ 668
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 4e-05
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
DR S S G + R+++G+ LL P+LLL+DEP LDL + + +LE + ++P+
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182
Query: 310 VIISH 314
+ +SH
Sbjct: 183 LYVSH 187
|
Length = 352 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 59/231 (25%), Positives = 98/231 (42%), Gaps = 41/231 (17%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
R V+ ++NL + A + +++RGE AI+G +G GKS +M L +
Sbjct: 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQA 69
Query: 478 GGEV-----LLGEHN-VLPNYFEQNQAE------------------ALDLDKTVLETVAE 513
GG V LL + + EQ+ A+ +L+ TV E +AE
Sbjct: 70 GGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAE 129
Query: 514 -------AAEDWRIDDIKGLLG--RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
A+ + + + K +L R +L R LSGG + R+ + +
Sbjct: 130 SIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAV 189
Query: 565 LVLDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVV 611
L+ DEPT LD+ + + + I E VI ++HD V +I +RV+
Sbjct: 190 LIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL 240
|
Length = 623 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 5e-05
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 61/247 (24%)
Query: 92 SSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
S + +K+ N+S Y +L+ V+ E+ + + ++G +G GK+T L+ + E +S
Sbjct: 2 SKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES 61
Query: 152 GNVIKAKSNMKIAFLSQ---EFEVSMSRTVREEFMSAFKEEM-------------EIAG- 194
+ + ++ F +Q E V+++R R+ M K + +I G
Sbjct: 62 ----EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
KLE + +ESA+ D DL +D ++ K LD
Sbjct: 118 RPKLE-IDDIVESALKDADL-------WDEIKHKIHKSALD------------------- 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
S G Q R+ + + L P +LL+DEP LD + ++ + ++
Sbjct: 151 -------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELT 203
Query: 309 MVIISHD 315
MVI+SH+
Sbjct: 204 MVIVSHN 210
|
Length = 261 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 6e-05
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDR 316
S G + R+ L + L +P +L+LDEP +HLD++ L L ++I+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 317 AFLDQLCTKIVETEMGV 333
L +I+ E G
Sbjct: 157 ETL-ASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 6e-05
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 96 SGVKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L N+ +Y+ + + +K+GE V L+G NG+GK+T ++ G +P SG +
Sbjct: 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + + +S A +LE +K + D L
Sbjct: 381 L----------------------LDGKPVS--------AEQLEDYRKLFSAVFSDYHL-- 408
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
FD L + ++ + +L + +DG S+G + R++L L
Sbjct: 409 -----FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463
Query: 275 LQDPDLLLLDE 285
L++ D+L+LDE
Sbjct: 464 LEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 69/260 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ + + G+ + +V EV++ E V L+G NGAGKTT + G +P G +
Sbjct: 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEME---IAGKL------ER 198
I+ +IA + Q + TV E + A ++++ +G L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA 126
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL+ A ++ +G L + R QA NL
Sbjct: 127 ESEALDRAATWLERVGLL----EHANR--QAGNL-------------------------- 154
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPT---NHLDLDTIEWLEGYLGKQ-DVPMVIISH 314
+ G Q R+ + + ++ P++L+LDEP N + ++ L L + +V +++I H
Sbjct: 155 --AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
Query: 315 DRAFLDQLCTKIVETEMGVS 334
D K+V MG+S
Sbjct: 213 D--------MKLV---MGIS 221
|
Length = 255 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 7e-05
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 97 GVKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
G+ L+N+S +Y+ T L DV ++ G +G G+GK+T ++++ G P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
G+V I S+ ++ + +R++ F + Q E+ + D+
Sbjct: 62 GSVRVDD--TLITSTSKNKDI---KQIRKKVGLVF--------QFPESQLFEETVLKDVA 108
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
+ F + Q +A+A+ + L +G + ++ S G R+++
Sbjct: 109 FGPQ---NFGVSQEEAEALAREKLAL--------VGISESLFEKNPFELSGGQMRRVAIA 157
Query: 272 KILLQDPDLLLLDEPTNHLD 291
IL +P +L+LDEPT LD
Sbjct: 158 GILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 8e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
F + L FS G + R++L +ILLQD ++LLDEPT LD T
Sbjct: 87 FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 8e-05
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 56/208 (26%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ ++ SY G L ++ + + ++ ++G NGAGK+T R G +P SG+V+
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 157 -----AKSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
K N++ + F + + ++ S TV E +IA G +
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQI-FSPTV----------EQDIAFGPIN------ 106
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+G LDE +T+ +VS + LG + DR+ S G
Sbjct: 107 ---------LG--LDE-------------ETVAHRVSSALHMLGLE-ELRDRVPHHLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ ++ +P +L+LDEPT LD
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 8e-05
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+ Y +L+ +++ + G + L G NGAGKTT L++IAG P+ G ++ + ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 162 K 162
K
Sbjct: 66 K 66
|
Length = 200 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-05
Identities = 40/152 (26%), Positives = 60/152 (39%), Gaps = 24/152 (15%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP---RGGEVLLGEHNVLPNYFEQNQAEALDL 503
+ GE A++G +G GK+TL+ + G VLL + A
Sbjct: 48 AKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQD 107
Query: 504 DK-----TVLETVAEAAE---------DWRIDDIKGLLGRCNFK--ADML---DRKVSLL 544
D TV E + A + + + +L + A+ +V L
Sbjct: 108 DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGL 167
Query: 545 SGGEKARLAF-CKFMVKPSTLLVLDEPTNHLD 575
SGGE+ RLAF + + P LL DEPT+ LD
Sbjct: 168 SGGERKRLAFASELLTDPP-LLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 8e-05
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 27/191 (14%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LP 490
L+ + I EK I+G G GKSTLL M + + GGE+ + + L
Sbjct: 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELR 1383
Query: 491 NYFEQNQAEALDLDKTVLETV-----AEAAEDWRIDDIKGLLGRCNFKADMLDRKV---- 541
F + + D TV + V A +AE W ++ GL R +++ +D +V
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443
Query: 542 SLLSGGEKARLAFCKFMVKP-STLLVLDEPTNHLD------IPSKEMLEEAISEYKGTVI 594
S S G++ + + ++K S +++DE T ++D I + M A S Y TVI
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVM--SAFSAY--TVI 1499
Query: 595 TVSHDRYFVKQ 605
T++H + V Q
Sbjct: 1500 TIAHRLHTVAQ 1510
|
Length = 1560 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 54/234 (23%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
++++ Y +K+V +V++G L+G +G GKTT LR I + G A+
Sbjct: 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG----ARVT 63
Query: 161 MKIAFLSQEF------EVSMSRTVREEF--------MSAFKEEMEIAGKLERVQKALESA 206
+I Q+ V+M R V F MS F ++
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVF-----------------DNV 106
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSG 263
V + L G + D L++ +++ L +V DRL S G
Sbjct: 107 VAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVK-------------DRLKTPATGLSGG 152
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
Q R+ + + L +P++LL+DEPT+ LD + +E + K+ ++I++H+
Sbjct: 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 67/242 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAG 145
+++ ++ S+ V VL V E+ L+G +G+GK+T LR+ ++G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 146 QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--------- 196
+ D ++ K M + L + ++ +S F E + + KL
Sbjct: 64 EVYLDGQDIFK----MDVIELRRRVQMVFQIPNPIPNLSIF-ENVALGLKLNRLVKSKKE 118
Query: 197 --ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
ERV+ ALE A +L DE D LDA KL
Sbjct: 119 LQERVRWALEKA--------QLWDEVK-----------DRLDAPAGKL------------ 147
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVII 312
S G Q R+ + + L P++LL DEPT +LD + +E K+D+ +V++
Sbjct: 148 ------SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLV 201
Query: 313 SH 314
+H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 28/223 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+EN++ Y LK+V+ ++ K L+G +G GK+T +R + + I+
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +++ + E + + + ++ S D++ R+
Sbjct: 73 KVSIE------------GEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRI- 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
N LD V + + DRL + S S G Q R+ + + L
Sbjct: 120 ----------HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P ++L DEPT+ LD + +E + K+D +VI++H+
Sbjct: 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 8/76 (10%)
Query: 262 SGWQM-RMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDR 316
SG Q R+++ + LL+DP +L+LDE T+ LD +T +E L + +++I+H
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAHRL 155
Query: 317 AFLDQLCTKIVETEMG 332
+ + +I+ + G
Sbjct: 156 S-TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 2e-04
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 53/237 (22%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
E ++ Y TV +++T E+ G ++G NG GK+T LR ++ P G+V
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
+ +I L+Q TV+E + R +K E AV
Sbjct: 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPL---FTRWRKEDEEAV--- 124
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+K M G T D+ V + S G + R +
Sbjct: 125 -----------------------------TKAMQATGIT-HLADQSVDTLSGGQRQRAWI 154
Query: 271 GKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+L Q+ ++LLDEPT LD +D +E L ++ + + HD L+Q C
Sbjct: 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD---LNQAC 208
|
Length = 265 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 72/239 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L ++++S T L ++ EV+ GE + LVG NGAGK+T L +AG SG++
Sbjct: 4 MQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFA 58
Query: 155 ---IKAKSNMKI----AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S ++ A+LSQ+ + V +++ + + L V AL A+
Sbjct: 59 GQPLEAWSATELARHRAYLSQQQTPPFAMPVW-HYLTLHQPDKTRTELLNDVAGAL--AL 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQM 266
DD +LG R S G WQ
Sbjct: 116 DD-----------------------------------KLG-------RSTNQLSGGEWQ- 132
Query: 267 RMSLGKILLQ-----DPD--LLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHD 315
R+ L ++LQ +P LLLLDEP N LD+ ++ L L +Q + +V+ SHD
Sbjct: 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
|
Length = 248 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 41/226 (18%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++E++ YK G LK ++ + +G K L+G NGAGK+T L + G P G
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG---- 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---- 212
++ + +E + VR + F++ + Q + DD+
Sbjct: 61 -----RVKVMGREVNAENEKWVRSKVGLVFQDPDD--------QVFSSTVWDDVAFGPVN 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
MG LD+ ++ +R +A L + D D+ S G + R+++
Sbjct: 108 MG--LDKDEVERRVEEA--LKAVRMW------------DFRDKPPYHLSYGQKKRVAIAG 151
Query: 273 ILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+L DPD+++LDEP +LD +T+ + L Q +++ +HD
Sbjct: 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197
|
Length = 274 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 50/226 (22%), Positives = 106/226 (46%), Gaps = 38/226 (16%)
Query: 102 NISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKA 157
NIS+ Y + +LKD+T ++ G++G +G+GK+T L+++ E DS K
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS----KI 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA--GKLERVQKALES-AVDDMDLMG 214
K + K+ + ++ + +R+E F++ + + L+S + + +
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLG 271
++++E + ++G + DRL + S G Q R+++
Sbjct: 128 KIVEE----------------------CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
+ L P +LL+DEPT+ +D+ + +E + K ++ +VI+SH+
Sbjct: 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 32/222 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+EN+ Y LK + + + L+G +G GK+T LR + + G I K
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 160 NMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
M + +V+ R V F M I E V L
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSI---YENVAYGL--------------- 107
Query: 219 EFDLLQRKAQAV-NLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
+AQ + + LD V + + + DRL + S G Q R+ + + +
Sbjct: 108 -------RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISH 314
+PD++L+DEPT+ LD +E + K++ +VI++H
Sbjct: 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 43/239 (17%)
Query: 91 ASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-- 148
S ++ ++ Y G LK++ V + + L+G +G GK+T LR +
Sbjct: 10 VSPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 149 PDS---GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
P + G +I N+ I LS E EV M ++ + + F + +
Sbjct: 70 PGNHYEGEIILHPDNVNI--LSPEVDPIEVRMRISMVFQKPNPFPKSI------------ 115
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VAS 259
E+ + + G ++R++ L+ +V + + DRL +
Sbjct: 116 FENVAYGLRIRG--------VKRRS------ILEERVENALRNAALWDEVKDRLGDLAFN 161
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G Q R+ + + L DP++LL DEPT+ LD +IE L L K V ++I++H+
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 2e-04
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------------QEEPDSGNVIKAKSN 160
+ + ++++GE L+G++G+GK+T LR + G D N A
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 161 M----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+++ + Q+F + RTV E AF EM+ K ER ++ E
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENV--AFGLEMQGMPKAERRKRVDE------------ 147
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ + V L A DR S G Q R+ L +
Sbjct: 148 ---------QLELVGL-----------------AQWADRKPGELSGGMQQRVGLARAFAT 181
Query: 277 DPDLLLLDEPTNHLD 291
+ +LL+DEP + LD
Sbjct: 182 EAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
+ L N SY +L +++W+V GE +VG NGAGK+T L +I G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
Length = 490 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 2e-04
Identities = 47/133 (35%), Positives = 68/133 (51%), Gaps = 24/133 (18%)
Query: 507 VLETVAEAAEDWRIDD------IKGLLGRCNFKADML--DRKVSLLSGGEKARLAFCKFM 558
+LE A AE + +D+ I L C+ D L R +S LSGGE RL +
Sbjct: 768 ILEMTAYEAEKFFLDEPSIHEKIHAL---CSLGLDYLPLGRPLSSLSGGEIQRLKLAYEL 824
Query: 559 VKPS---TLLVLDEPTNHL---DIPSKEMLEEAIS-EYKG-TVITVSHDRYFVKQIVNRV 610
+ PS TL VLDEPT L DI K ++ S ++G TV+ + H+ + VK + + V
Sbjct: 825 LAPSKKPTLYVLDEPTTGLHTHDI--KALIYVLQSLTHQGHTVVIIEHNMHVVK-VADYV 881
Query: 611 VEV--KGSNLQDY 621
+E+ +G NL Y
Sbjct: 882 LELGPEGGNLGGY 894
|
Length = 1809 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K+EN++ Y T L +V E++ GE VGL+G G+GK+T ++ + G +P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 153 NVI 155
+I
Sbjct: 63 KII 65
|
Length = 287 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSG 152
++++++S Y + D++ +++K L+G +G GK+T LR I + G
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG 81
Query: 153 NVIKAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAV 207
++ N+ I ++ E+ M F + + A K ER + L+ V
Sbjct: 82 EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIV 141
Query: 208 DDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ L DE D L A S S G Q
Sbjct: 142 EESLTKAALWDEVKDRLHSSA------------------------------LSLSGGQQQ 171
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
R+ + + L P +LLLDEP + LD + +E + K++ ++I++H+
Sbjct: 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-04
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 61/203 (30%)
Query: 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAGQE--EPDS 151
S G T+ + + + G+++ LVG +GAGKT+ L I G E E D
Sbjct: 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELD- 417
Query: 152 GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
++++ Q T+R+ + + + E++Q+ALE+A
Sbjct: 418 ----PESWRKHLSWVGQNPQLPHG----TLRDNVLLGNPDASD-----EQLQQALENA-- 462
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ EF LDT +G D L S G R+
Sbjct: 463 -------WVSEF----LPLLPQGLDT----------PIG---DQAAGL----SVGQAQRL 494
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + LLQ LLLLDEPT LD
Sbjct: 495 ALARALLQPCQLLLLDEPTASLD 517
|
Length = 588 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 50/196 (25%), Positives = 83/196 (42%), Gaps = 24/196 (12%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLL 483
I + ++R + N GE A++GP+G GKSTLL + G + G +L
Sbjct: 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILA 129
Query: 484 GEHNVLPNYFEQ----NQAEALDLDKTVLETVAEAA-----------EDWRIDD--IKGL 526
++ Q + L TV ET+ + E + + I L
Sbjct: 130 NNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISEL 189
Query: 527 -LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
L +C + + + +SGGE+ R++ M+ +LL+LDEPT+ LD + L
Sbjct: 190 GLTKCE-NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLT 248
Query: 586 ISE--YKG-TVITVSH 598
+ KG T++T H
Sbjct: 249 LGSLAQKGKTIVTSMH 264
|
Length = 659 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 44/202 (21%), Positives = 87/202 (43%), Gaps = 37/202 (18%)
Query: 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLT--IERGEKTAIIGPNGCGKSTLLKLIM 471
+PE G + ++NL Y L N++ ++ GEK I+G G GKSTL+ +
Sbjct: 1 WPEHGE-----IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF 55
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA----AEDWRIDD--IKG 525
+ G++ + + +D+ LE + + +D + I+
Sbjct: 56 RFLEAEEGKIEI---------------DGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100
Query: 526 LLGRCN-------FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
L + + A + LS G++ L + ++K +LVLDE T +D +
Sbjct: 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYAT 160
Query: 579 KEMLEEAI-SEYKG-TVITVSH 598
++++ I E+ T++T++H
Sbjct: 161 DALIQKTIREEFTNSTILTIAH 182
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 3e-04
Identities = 46/221 (20%), Positives = 87/221 (39%), Gaps = 43/221 (19%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----R 477
+ ++N+ + L + +LT++RG A++G +G GKS +G+
Sbjct: 2 PQQIELRNIAL-QAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQT 60
Query: 478 GGEVLLGEHNVLPNYFE--------QNQAEALDLDKT----VLET------------VAE 513
G VLL V P QN A + T ET +
Sbjct: 61 AGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTA 120
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
A E +++ +L F+ +SGG R+ ++ + ++ DEPT
Sbjct: 121 ALEAVGLENAARVLKLYPFE----------MSGGMLQRMMIALALLCEAPFIIADEPTTD 170
Query: 574 LDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
LD+ ++ ++LE + + ++ V+HD V ++ + V
Sbjct: 171 LDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDV 211
|
Length = 254 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPM 309
D L +FS G Q R+ + + L+ P L+ +DEPT LD+ ++ L G + + + +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 310 VIISHDRA 317
VI++HD A
Sbjct: 206 VIVTHDLA 213
|
Length = 258 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 4e-04
Identities = 53/187 (28%), Positives = 82/187 (43%), Gaps = 26/187 (13%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLL-GEHNVLPNYFEQNQA- 498
+L + GE ++ G NG GKSTL+K++ G+ P G GE++ GE N + +A
Sbjct: 25 SLKVRAGEIVSLCGENGAGKSTLMKVLSGV-YPHGTYEGEIIFEGEELQASNIRDTERAG 83
Query: 499 -----EALDLDK--TVLETV---AEAAEDWRIDD------IKGLLGRCNFKADMLDRKVS 542
+ L L K +VLE + E +D + LL + + V
Sbjct: 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINP-ATPVG 142
Query: 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TVITVSHD 599
L G++ + K + K + LL+LDEPT L +L + I + K I +SH
Sbjct: 143 NLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHK 202
Query: 600 RYFVKQI 606
VK I
Sbjct: 203 LNEVKAI 209
|
Length = 506 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 4e-04
Identities = 52/167 (31%), Positives = 73/167 (43%), Gaps = 42/167 (25%)
Query: 423 SVVTIKNLEF----GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SV+T KNL + R L N + ++ G TA++G +G GK+TLL ++ G K G
Sbjct: 2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAG-RKTAG 60
Query: 479 ---GEVLLGEHNVLPN------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR 529
GE+L+ + N Y EQ D+ L TV EA
Sbjct: 61 VITGEILINGRPLDKNFQRSTGYVEQQ-----DVHSPNL-TVREALR------------- 101
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLD 575
F A + LS ++ RL + KPS +L LDEPT+ LD
Sbjct: 102 --FSALLRG-----LSVEQRKRLTIGVELAAKPS-ILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 5e-04
Identities = 43/198 (21%), Positives = 82/198 (41%), Gaps = 31/198 (15%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF--------- 493
+ ++ GE + G G G+S L+KL+ G + G+V L +
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331
Query: 494 ---EQNQAEALDLDKTVLETVAEAA------------EDWRIDDIKGLLGRCNFKADMLD 538
E +AE + +V + + +A W ++ + N K +
Sbjct: 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSRE 391
Query: 539 RKVSLLSGG--EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---SEYKGTV 593
+ + LSGG +KA L +++ + +++LDEPT +D+ +K + I + V
Sbjct: 392 QLIMNLSGGNQQKAILG--RWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAV 449
Query: 594 ITVSHDRYFVKQIVNRVV 611
+ VS D V + +R+V
Sbjct: 450 LFVSSDLPEVLGVADRIV 467
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 5e-04
Identities = 52/201 (25%), Positives = 87/201 (43%), Gaps = 34/201 (16%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE--QN-- 496
+R + + GE ++G NG GK+T K++ G G+ + ++L N + QN
Sbjct: 1956 DRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015
Query: 497 ---QAEALDLDKTVLETV-------------AEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
Q +A+D T E + E +W I + GL + DR
Sbjct: 2016 YCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL-GL-------SLYADRL 2067
Query: 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA----ISEYKGTVITV 596
SGG K +L+ ++ L++LDEPT +D ++ ML I E + V+T
Sbjct: 2068 AGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT- 2126
Query: 597 SHDRYFVKQIVNRV-VEVKGS 616
SH + + R+ + VKG+
Sbjct: 2127 SHSMEECEALCTRLAIMVKGA 2147
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 5e-04
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 29/224 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +++ SY L ++ + ++ E L+G +G GK+T LR + + D N+
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND-DIENI--- 60
Query: 158 KSNMKIAFLSQEFEVSMSRTV--REEFMSAFKEEMEIAGKL-ERVQKALESA-VDDMDLM 213
K +I F Q S V R+E F++ + + V L+ A V D +L+
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ ++E K + + E T D+ DR +FS G Q R+ + +
Sbjct: 121 DQRVEE----------------SLKQAAIWKE---TKDNLDRNAQAFSGGQQQRICIARA 161
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
L P ++LLDEPT+ LD + +E L K ++++H+
Sbjct: 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 7e-04
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 49/219 (22%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+D+++ V+ G++VGL+G G+GK+T L + + LS
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-------------------LRLLST 1271
Query: 169 EFEVSMS---------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
E E+ + +T R+ F ++ +G + ++D + DE
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK----------NLDPYEQWSDE 1321
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+ + A+ V L ++ + + +L F DG ++ S+G + M L + +L
Sbjct: 1322 --EIWKVAEEVGLKSV---IEQFPDKLDFVLVDGGYVL---SNGHKQLMCLARSILSKAK 1373
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR 316
+LLLDEP+ HLD T++ + L KQ VI+S R
Sbjct: 1374 ILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 8e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L ++ LL+LDEPT L +E L L Q V ++ ISH
Sbjct: 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 9e-04
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + G TVL V+ L+G G+GKTT LR + + SG
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG--------- 76
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLD 218
+ S + + +++ +E G L + ++ D L G
Sbjct: 77 --------YRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG---- 124
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILL 275
R + V + E+G DRL S S G Q + L + L
Sbjct: 125 -----VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317
+P++LLLDEPT+ LD T E +E ++ + ++I++H+ A
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
|
Length = 276 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G Q R++ ++LL P + LDE T+ LD ++
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+ +L ++++ ++ GE + G +G GK+T L+I+A P SG ++
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 160 NMKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ I+ L E +VS F + + ++ Q D +
Sbjct: 70 D--ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-------DPAIFLDD 120
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L+ F L L +++L S G + R+SL + L
Sbjct: 121 LERFALPD--------TILTKNIAEL------------------SGGEKQRISLIRNLQF 154
Query: 277 DPDLLLLDEPTNHLDLDTI----EWLEGYLGKQDVPMVIISHDR 316
P +LLLDE T+ LD E + Y+ +Q++ ++ ++HD+
Sbjct: 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 25/169 (14%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ +++ + Y + +L I +GE +IG NG GK+TLL + G + G +
Sbjct: 3 KVMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI 62
Query: 482 LLGEHNVLPNYFEQNQAEALDL---------DKTVLETVA-------EAAEDWRIDDIKG 525
+ ++ + EA+ + TV E +A RI +
Sbjct: 63 VFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYE 122
Query: 526 LLGRCNFKADMLDRKVS---LLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
L R + +R++ +SGGE+ LA + ++ LL+LDEP+
Sbjct: 123 LFPR------LHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPS 165
|
Length = 237 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 61/245 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNV 154
+++N+ S +LK + + KGE ++G NG+GK+T ++IAG P G++
Sbjct: 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDI 66
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ ++ L E E R F+ AF+ +EI G V + D +
Sbjct: 67 LFKGESI----LDLEPE---ERAHLGIFL-AFQYPIEIPG------------VSNADFL- 105
Query: 215 RL----------LDEFD------LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
RL L E D ++ K + V +D L ++G
Sbjct: 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS---------FLSRNVNEG----- 151
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGY--LGKQDVPMVIISHD 315
FS G + R + ++ L D +L +LDE + LD+D ++ + EG L + +++I+H
Sbjct: 152 -FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210
Query: 316 RAFLD 320
+ LD
Sbjct: 211 QRLLD 215
|
Length = 252 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.001
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 8/95 (8%)
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF---CKFMVKPSTLLVLDEPTNH 573
+ ++ D+ L + +L + +S G K LA + +LL++DEP N
Sbjct: 163 ELKLLDLVKRLFLESDLLRLLKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENG 222
Query: 574 LDIPS--KEMLE--EAISEYKGTVITVSHDRYFVK 604
L P ++++E + +SE +I +H +
Sbjct: 223 LH-PKLLRKLVELLKELSEKGAQLIFTTHSPLLLD 256
|
Length = 256 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 45/191 (23%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPD---SGNVIKAKSNMKI 163
+L++VT + G L+GV+GAGKTT + ++AG++ E D SG K ++ +I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 164 AFLSQEFEV-SMSRTVREEFM-SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+ ++ ++ S TVRE + SAF + K E++ +DE
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM---------------MFVDEV- 998
Query: 222 LLQRKAQAVNLDTL-DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ V LD L DA V G V S+ + R+++ L+ +P +
Sbjct: 999 -----MELVELDNLKDAIV-------------GLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 281 LLLDEPTNHLD 291
+ +DEPT+ LD
Sbjct: 1041 IFMDEPTSGLD 1051
|
Length = 1470 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 0.002
Identities = 48/209 (22%), Positives = 79/209 (37%), Gaps = 32/209 (15%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLL 467
+++ P G V+ +++L + + + + GE I G G G+S L+
Sbjct: 243 VLRVVKPPS-TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYF-------------EQNQAEALDLDKTVLETVAEA 514
+ I GL KP G +LL +VL E L LD ++ E +
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLG 361
Query: 515 AED------WRIDDIKGLLGRCN-------FKADMLDRKVSLLSGG--EKARLAFCKFMV 559
D D + + +A D LSGG +K LA +
Sbjct: 362 RHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAR-ELAR 420
Query: 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+P LL+ +PT LD+ + E + E + E
Sbjct: 421 RPD-LLIAAQPTRGLDVGAIEFIHERLLE 448
|
Length = 501 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 33/188 (17%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
V L V++ +++G+ + +VG +G GK+T R++ E P G + ++ A E
Sbjct: 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA--DPE 85
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
+ + + ++ F + + G L +K +G++L+E
Sbjct: 86 AQKLLRQKIQIVFQNPY-------GSLNPRKK-----------VGQILEE-------PLL 120
Query: 230 VNLDTLDA-----KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+N L A K +M ++G + DR FS G + R+++ + L+ DPD+++ D
Sbjct: 121 INTS-LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179
Query: 285 EPTNHLDL 292
EP + LD+
Sbjct: 180 EPVSALDV 187
|
Length = 327 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.002
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 98 VKLENISKSY------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+K +N+S Y L DV EVKKGE + ++G NG+GK+T + + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 152 GNVI 155
G V
Sbjct: 65 GKVY 68
|
Length = 280 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.002
Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ + +LK+V ++ K L+G +G GK+T +R +
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN------------- 50
Query: 158 KSNMKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ N I E + + + + + + ++ ++ +S D++ R+
Sbjct: 51 RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRI 110
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
E D + + ++L K + L E+ D D+ S G Q R+ + + +
Sbjct: 111 HGEDD--EDFIEERVEESL--KAAALWDEV---KDKLDKSALGLSGGQQQRLCIARTIAV 163
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P+++L+DEP + LD + +E + K+D +VI++H+
Sbjct: 164 SPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.002
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 43/190 (22%)
Query: 100 LENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
L N++ +Y + + +K+GE + L+G NG+GK+T ++ G +P SG +
Sbjct: 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI---- 380
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV-DDMDLMGRLL 217
L + V+ + E++ F SAV D L +LL
Sbjct: 381 ------LLDGK-PVTAEQ--PEDYRKLF------------------SAVFTDFHLFDQLL 413
Query: 218 DEFDLLQRKAQAVN--LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ V L+ L KL +DG S G + R++L L
Sbjct: 414 GP-EGKPANPALVEKWLERLKMA-HKL------ELEDGRISNLKLSKGQKKRLALLLALA 465
Query: 276 QDPDLLLLDE 285
++ D+LLLDE
Sbjct: 466 EERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 47/213 (22%)
Query: 96 SGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+G+K ENI + G +++ +++EV G + + G NG GK++ RI+ P G
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL-WPVYGGR 508
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEF---MSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + K+ ++ Q +++ T+R++ S E+M+ G + K LE +D++
Sbjct: 509 LTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDS--SEDMKRRGLSD---KDLEQILDNVQ 562
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMS 269
L +L+R E G++A D D L S G + R++
Sbjct: 563 LT-------HILER-------------------EGGWSAVQDWMDVL----SGGEKQRIA 592
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302
+ ++ P +LDE T+ + +D +EGY+
Sbjct: 593 MARLFYHKPQFAILDECTSAVSVD----VEGYM 621
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.002
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 58/221 (26%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--------------IKAK 158
+KD + +++GE ++G++G+GK+T +R++ EP G V ++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
KIA + Q F + TV + +AF E+ ER +KAL++
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDN--TAFGMELAGINAEERREKALDA------------- 148
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ V L+ + D L S G + R+ L + L +P
Sbjct: 149 --------LRQVGLEN-------------YAHSYPDEL----SGGMRQRVGLARALAINP 183
Query: 279 DLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
D+LL+DE + LD + + L K +V ISHD
Sbjct: 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEF 170
VL+ + + GEKVG+VG GAGK++ + E G +I N+ KI F
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
++++ ++ + +G L ++D + DE A+
Sbjct: 1361 KITIIP----------QDPVLFSGSLRM----------NLDPFSQYSDE-----EVWWAL 1395
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
L L VS L +L +G + S G + + L + LL+ +L+LDE T +
Sbjct: 1396 ELAHLKTFVSALPDKLDHECAEGGE---NLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 291 DLDTIEWLEGYLGKQ--DVPMVIISH 314
DL+T ++ + Q D ++ I+H
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 43/238 (18%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+++++ + G++VGL+G G+GK+T L ++ + +++I
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL--------RLLNTEGDIQID---- 63
Query: 169 EFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
VS + +++ AF ++ +G + ++D G+ DE +
Sbjct: 64 --GVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK----------NLDPYGKWSDE--EIW 109
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ A+ V L ++ + + +L F DG ++ S G + M L + +L +LLLD
Sbjct: 110 KVAEEVGLKSV---IEQFPGQLDFVLVDGGCVL---SHGHKQLMCLARSVLSKAKILLLD 163
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR--AFLDQLCTKIVETEMGVSRTYE 338
EP+ HLD T + + L KQ VI+S R A L+ C + + E R Y+
Sbjct: 164 EPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIEAMLE--CQRFLVIEENKVRQYD 218
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 59/219 (26%), Positives = 97/219 (44%), Gaps = 62/219 (28%)
Query: 95 SSG-VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL----RIIAGQE 147
SSG +K E++ Y+ VL +++E+ EKVG+VG GAGK++ L RI+
Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV---- 1289
Query: 148 EPDSGNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEF-MSAFKE--EMEIAGK 195
E + G ++ ++ K+ + + V S TVR F + F E + ++
Sbjct: 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR--FNLDPFNEHNDADLWES 1347
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
LER D+++R + LDA+VS E G
Sbjct: 1348 LERAHLK------------------DVIRRNSLG-----LDAEVS----EAG-------- 1372
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+FS G + +SL + LL+ +L+LDE T +D+ T
Sbjct: 1373 --ENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
|
Length = 1622 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII 143
+++EN++ Y LK++ ++ K + L+G +G GK+T LR +
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSL 47
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S S G Q R+ + + L +P++LL+DEPT+ LD + T IE L L K+D
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDY 196
Query: 308 PMVIISHD 315
+VI++H+
Sbjct: 197 TIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 57/227 (25%), Positives = 97/227 (42%), Gaps = 46/227 (20%)
Query: 426 TIKNLEFGY----EDRLLFNRANLTIERGEKTAIIGPNGCGKS-TLLKLIMGLEKP---- 476
I+NL + R + N +L IE GE A++G +G GKS T L ++ L P
Sbjct: 7 AIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVY 66
Query: 477 RGGEVLLGEHNVLPNYFEQ-------NQAEAL------------DLDKTVLETVA----- 512
G++ ++L + EQ N+ + L+K + E ++
Sbjct: 67 PSGDIRFHGESLL-HASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM 125
Query: 513 --EAAEDWRIDDIKGLLGRCNFK--ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568
EAA +I L R + A L LSGGE+ R+ ++ LL+ D
Sbjct: 126 RREAARG----EILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181
Query: 569 EPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
EPT LD+ + ++L E E ++ ++H+ V+++ +RV
Sbjct: 182 EPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVA 228
|
Length = 529 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.003
Identities = 56/261 (21%), Positives = 113/261 (43%), Gaps = 34/261 (13%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491
F E ++L ++++ RG+ T ++G G GKSTLL+ ++ + G V E ++
Sbjct: 668 FELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-WAERSIA-- 724
Query: 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM----------LDRKV 541
Y Q +A ++ TV + E+ + + +AD+ + K
Sbjct: 725 YVPQ---QAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKG 780
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE-MLEEAI-SEYKG-TVITVSH 598
LSGG+KAR++ + + + +LD+P + LD E ++EE G T + +H
Sbjct: 781 VNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATH 840
Query: 599 DRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE------------KNLDAREKELEREAEL 646
+ V + + VV + ++ ++G ++ +N D++E + + E
Sbjct: 841 QVHVVPR-ADYVVALGDGRVE-FSGSSADFMRTSLYATLAAELKENKDSKEGDADAEVAE 898
Query: 647 EERAPKIKAKSKMSKAEKEAR 667
+ AP + A++E
Sbjct: 899 VDAAPGGAVDHEPPVAKQEGN 919
|
Length = 1560 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENI-SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGA 134
E +N+ ++ + N + + ++ N+ S+ K V +D+++ V +GE +G G+ G+
Sbjct: 245 ELQNR-FNAMKENVSNLAHETVFEVRNVTSRDRKKV---RDISFSVCRGEILGFAGLVGS 300
Query: 135 GKTTQLRIIAGQEEPDSGNV------IKAKSNMK-----IAFLSQEFEVSMSRTVREE-F 182
G+T + + G ++ G + I +S + +A++++ SR R+ F
Sbjct: 301 GRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE------SR--RDNGF 352
Query: 183 MSAF--KEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
F + M I+ L+ K ++D ++ +LL K +VN +
Sbjct: 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN------ 406
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G Q ++ + K L P++++ DEPT +D+
Sbjct: 407 -----------------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
|
Length = 510 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S G Q R+ + + L P++LL+DEPT+ LD + T IE L L K+
Sbjct: 141 DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL-KKKY 199
Query: 308 PMVIISH 314
+VI++H
Sbjct: 200 TIVIVTH 206
|
Length = 253 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+S+ L+ +P LL LDEPT+ LD
Sbjct: 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDV 307
DRL + S G Q R+ + + + +P++LLLDEPT+ LD IE L L K
Sbjct: 160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKY 218
Query: 308 PMVIISH 314
+VI++H
Sbjct: 219 TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.004
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 234 TLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
LD V K + + DRL S S G Q R+ + ++L P ++LLDEPT+ L
Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 291 DLDTIEWLEG--YLGKQDVPMVIISH 314
D + +E K D M++++
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVIISHD 315
S S G Q R+ + ++L PD++LLDEPT+ LD + +E L + +++++H
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.004
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 254 DRLVA---SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLEGYLG-KQDVP 308
DRL S S G Q R+ + + L +PD+LL+DEPT+ LD + T + E L K+
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 309 MVIISHD 315
+VI++H+
Sbjct: 207 IVIVTHN 213
|
Length = 259 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.004
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLM-----PELGFTADDGDRLVASFSSGWQMRMSLG 271
LD F R A L T+ + +L PEL +A S G Q + L
Sbjct: 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA---------IARLSGGNQQKAVLA 417
Query: 272 KILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
K LL +P +L+LDEPT +D+ I L L +Q V +++IS
Sbjct: 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462
|
Length = 506 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.004
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 10/76 (13%)
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHL---DIPSKEMLE--EAISE 588
L + + LSGGE R+ K + K S TL +LDEPT L D+ K++LE + + +
Sbjct: 163 LGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDV--KKLLEVLQRLVD 220
Query: 589 YKGTVITVSHDRYFVK 604
TV+ + H+ +K
Sbjct: 221 KGNTVVVIEHNLDVIK 236
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 692 | |||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-103 Score=874.27 Aligned_cols=522 Identities=42% Similarity=0.715 Sum_probs=456.9
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCC
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (692)
.+|+++|++++|+++++|+++||+|.+|+++||||+|||||||||++|+|.+.|++|+|... .+.+|+|++|++.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~-~~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRP-KGLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeec-CCceEEEeCCCCCcCCC
Confidence 46999999999999999999999999999999999999999999999999999999999987 45799999999998888
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcccccc
Q 005532 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (692)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (692)
.||.+.+..++.+......+++.+...+... ....+..+......++.|.++.++..+|..+|++.. ++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADP---------DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 8999999887766555544444443322211 112333444555667789999999999999999854 89
Q ss_pred ccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecceEE
Q 005532 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~ 335 (692)
++.+||||||+||+||+||+.+||||||||||||||.++++||+++|+++..|||+||||++|++.+|++|++++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999887669999999999999999999999999999
Q ss_pred EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-hhhhHHHHHHHHHHHHhhhccccc-ccceeee
Q 005532 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS-GRASSAEKKLERLQEEEQIEKPFQ-RKQMKIR 413 (692)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~~~~~~~~l~rl~~~~~~~~~~~-~~~~~~~ 413 (692)
.|.|||+.|..++.+....+...+.++++.++++.+++++....+++ .++.++.++++++.......++.. .....+.
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 99999999999999999888899999999999999999997664332 466777777888774322223322 3334456
Q ss_pred cCCCC-CCCCceEEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceee
Q 005532 414 FPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (692)
Q Consensus 414 ~~~~~-~~~~~~l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~ 491 (692)
|++.. ..++.+++++|+++.|++ +.+++++||.|.+|++||||||||+|||||||+|+|...|.+|+|.++ ..+..+
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~ig 388 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIG 388 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEE
Confidence 66655 478899999999999966 689999999999999999999999999999999999999999999985 568899
Q ss_pred eecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
||.|+.... +++.|+.+++...........++.+|++|+|+.+...+++..||||||.||.||++++.+|+||||||||
T Consensus 389 yf~Q~~~~l-~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPT 467 (530)
T COG0488 389 YFDQHRDEL-DPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPT 467 (530)
T ss_pred EEEehhhhc-CccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCC
Confidence 999986443 3788999999887655446789999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHHHh
Q 005532 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~~~ 632 (692)
||||+++++.|.++|.+|.||||+||||++|++++|++||++++ ++..|.|+|++|.+.+
T Consensus 468 NhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 468 NHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred ccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999 9999999999998743
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-92 Score=818.03 Aligned_cols=516 Identities=31% Similarity=0.542 Sum_probs=418.9
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCCC
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (692)
+|+++|++++|+++++|+||||+|++|+++||||||||||||||++|+|+++|++|+|.+++ ...|+|++|++.. ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~-~~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG-NWQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCC-CCC
Confidence 38899999999999999999999999999999999999999999999999999999999985 4579999997543 245
Q ss_pred CHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccc
Q 005532 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (692)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (692)
|+.+++...+.........+. ..... ... ..+..+.......+.+..+.++..+|+.+||.....+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~----~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLH----DANER-NDG-------HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHH----HHhcc-CCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 777766432211100000000 00000 000 001111111223456677889999999999975567899
Q ss_pred cccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecceEEE
Q 005532 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (692)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~ 336 (692)
+.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|++.++|||+||||++++..+||+|+++++|++..
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999988
Q ss_pred eccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchhhhHHHHHHHHHHHHhhhcccccccceeeecC
Q 005532 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (692)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~ 415 (692)
|.|+|+.|...+......+...++++++.+++..+++.++...+ .+.++.++.++++++.. ..++.......+.||
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~---~~~~~~~~~~~~~~~ 303 (638)
T PRK10636 227 YTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMEL---IAPAHVDNPFHFSFR 303 (638)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhc---ccccccCCceeEecC
Confidence 99999999988877777777888899999999999998754321 12233444555555432 111111233455666
Q ss_pred CCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecc
Q 005532 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (692)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q 495 (692)
++..+++++|+++||++.|+++.+|+++||+|.+|+++||+|||||||||||++|+|+++|++|+|.+++ .+..+|++|
T Consensus 304 ~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q 382 (638)
T PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQ 382 (638)
T ss_pred CCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecC
Confidence 5555678899999999999988999999999999999999999999999999999999999999999964 356789988
Q ss_pred cchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCC
Q 005532 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD 575 (692)
.....+.+..++.+++...........+..+|+.|+|.....++++.+|||||||||+||++|+.+|+||||||||||||
T Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD 462 (638)
T PRK10636 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462 (638)
T ss_pred cchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCC
Confidence 64344556678887764322222334678999999996556789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 576 IPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 576 ~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+.+++.|.++|.++++|||+||||++++..+||+|++|++|++..|.|+|++|.+
T Consensus 463 ~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 463 LDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 9999999999999988999999999999999999999999999989999999965
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-91 Score=813.08 Aligned_cols=522 Identities=34% Similarity=0.574 Sum_probs=416.9
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCC
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (692)
++|+++|++++|+++++|+||||+|++|++++|||||||||||||++|+|+++|++|+|.+++ ...++|++|.+.....
T Consensus 2 ~~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~~~~~ 80 (635)
T PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPPRNVE 80 (635)
T ss_pred cEEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCCCCCC
Confidence 369999999999998999999999999999999999999999999999999999999999985 5578999998654445
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcccccc
Q 005532 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (692)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (692)
.++.+++...+.........+..+...+.. ....+ .+..+..+.......+.+....++.++++.+||. .++
T Consensus 81 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~ 152 (635)
T PRK11147 81 GTVYDFVAEGIEEQAEYLKRYHDISHLVET-DPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDA 152 (635)
T ss_pred CCHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchHH----HHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCC
Confidence 688887653332111111111111111100 00000 1111111111122344566778899999999995 278
Q ss_pred ccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecceEE
Q 005532 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~ 335 (692)
++.+|||||||||+|||||+.+|+||||||||||||+.+++||.++|++.+.|||+||||++++..+||+|+++++|++.
T Consensus 153 ~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~ 232 (635)
T PRK11147 153 ALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232 (635)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988889999999999999999999999999998
Q ss_pred EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhhcccccccceeeecC
Q 005532 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (692)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~ 415 (692)
.|.|+|+.|+.++......+...+..+++.+++...++++ ...+...+...+.++++++.... ..++.......+.++
T Consensus 233 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~ 310 (635)
T PRK11147 233 SYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ-GIKARRTRNEGRVRALKALRRER-SERREVMGTAKMQVE 310 (635)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHhhhhh-ccccccCCceeEEeC
Confidence 8999999999988777666667777777888888888876 22111111133344444433111 111111223345566
Q ss_pred CCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecc
Q 005532 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (692)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q 495 (692)
....+++.+|+++||++.|+++++|+++||+|.+|+++||+|||||||||||++|+|+++|++|+|.+ |.++.++|+.|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q 389 (635)
T PRK11147 311 EASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQ 389 (635)
T ss_pred CCCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeC
Confidence 55556778999999999999889999999999999999999999999999999999999999999999 55677889988
Q ss_pred cchhhcCCCccHHHHHHHHhccc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 496 NQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
.. ..+++..|+.+++....... ....+..+|+.|++..+..++++.+|||||||||+||++|+.+|+||||||||
T Consensus 390 ~~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt 468 (635)
T PRK11147 390 HR-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPT 468 (635)
T ss_pred cc-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 64 35677899999987643211 13457889999999756678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEE-CCEEEEecCChhHHHH
Q 005532 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK-GSNLQDYAGDYNYYLE 630 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~-~g~l~~~~g~~~~~~~ 630 (692)
||||+.+++.|.++|+++++|||+||||++++..+||+|++|+ +|++..|.|+|++|.+
T Consensus 469 ~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 469 NDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred CCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 9999999999999999998899999999999999999999998 8999999999999965
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-88 Score=778.56 Aligned_cols=526 Identities=32% Similarity=0.520 Sum_probs=409.5
Q ss_pred CcEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCC
Q 005532 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (692)
Q Consensus 96 ~~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (692)
++|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ...||||+|++.+++
T Consensus 5 ~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 83 (556)
T PRK11819 5 YIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLDP 83 (556)
T ss_pred EEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCCC
Confidence 4799999999998 78899999999999999999999999999999999999999999999874 457999999998878
Q ss_pred CCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccc
Q 005532 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (692)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (692)
..||.||+...+.........+........ ...+.+..+++.+..+.......+.|....++.++++.+|+. ..+
T Consensus 84 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~~ 158 (556)
T PRK11819 84 EKTVRENVEEGVAEVKAALDRFNEIYAAYA---EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PWD 158 (556)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--ccc
Confidence 889999986432110000000000000000 000011122233333344445566677788899999999995 368
Q ss_pred cccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecceE
Q 005532 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (692)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~ 334 (692)
+++.+|||||||||+|||||+.+|+||||||||||||+.++.++.++|++.+.|||+||||++++..+||+|++|++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999988778999999999999999999999999998
Q ss_pred EEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhhcccccccceeeec
Q 005532 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (692)
Q Consensus 335 ~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~ 414 (692)
..|.|+|+.|...+......+...+++.++.+++...++++.... .........+++++... ..++..++...+.+
T Consensus 239 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 314 (556)
T PRK11819 239 IPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKA-RQAKSKARLARYEELLS---EEYQKRNETNEIFI 314 (556)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHhhc---ccccccCCCceeec
Confidence 779999999987766555555555666666665555555431110 00011111222222211 01111111122223
Q ss_pred CCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeec
Q 005532 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (692)
Q Consensus 415 ~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~ 494 (692)
|+......++|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++ ..+..+|++
T Consensus 315 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~ 393 (556)
T PRK11819 315 PPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYVD 393 (556)
T ss_pred CCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEEe
Confidence 3333335678999999999998899999999999999999999999999999999999999999999995 455678888
Q ss_pred ccchhhcCCCccHHHHHHHHhcc----ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 495 QNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
|+. ..+.+..|+.+++...... .....+..+++.+++.....++++.+|||||||||+|||+|+.+|+|||||||
T Consensus 394 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEP 472 (556)
T PRK11819 394 QSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEP 472 (556)
T ss_pred Cch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 863 2456778999998764221 11234567899999964457899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEEC-CEEEEecCChhHHHHHhH
Q 005532 571 TNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG-SNLQDYAGDYNYYLEKNL 633 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~-g~l~~~~g~~~~~~~~~~ 633 (692)
|+|||+.++++|.+.|.++.+|||+||||++++..+||+|++|++ |++..|.|+|++|.+.++
T Consensus 473 t~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~~~~~ 536 (556)
T PRK11819 473 TNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYEEDKK 536 (556)
T ss_pred CCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHHHHHH
Confidence 999999999999999999988999999999999999999999985 889889999999977544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-91 Score=741.91 Aligned_cols=532 Identities=40% Similarity=0.647 Sum_probs=468.7
Q ss_pred CCCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCcc
Q 005532 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (692)
Q Consensus 93 ~~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (692)
.....+.++|++++|.+..+++|+.|++.+|+.+||||+|||||||+|++|.|-..|..- +..+..++++...
T Consensus 71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~-------~~d~y~ls~e~~p 143 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPE-------HIDFYLLSREIEP 143 (614)
T ss_pred cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCc-------ccchhhhcccCCC
Confidence 445679999999999999999999999999999999999999999999999999988432 3345667777544
Q ss_pred CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccc
Q 005532 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (692)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (692)
....+|...++....+........+.+...++. ...+.++.++.+...++....+.++.++|..+|+..+.
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---------~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---------KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---------hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 333345554545555555554445555444332 12344556667788899999999999999999999999
Q ss_pred cccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCC-eEEEEecCHHHHHhhcCeEEEEec
Q 005532 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV-PMVIISHDRAFLDQLCTKIVETEM 331 (692)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~-tvI~vsHd~~~l~~~~d~i~~l~~ 331 (692)
.++.+.+|||||++|++|||+|+.+|++|||||||||||.+++.||.++|.++.. ++|+++|+.+|++.+|++|+++.+
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 9999999999999999999999999999999999999999999999999999888 899999999999999999999999
Q ss_pred ceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CcchhhhHHHHHHHHHHHHhhhcccccccc
Q 005532 332 GVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG--ANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409 (692)
Q Consensus 332 G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~ 409 (692)
+++.+|.|||++|+..+.+....+...|+|+++.+...+.++.++..+ ..++++.+.++.+.++.+....+++...+.
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 999999999999999999999999999999999999999999998765 344677788888888888777778888888
Q ss_pred eeeecCCCCCCCCceEEEEeEEEEcCCe-ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc
Q 005532 410 MKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (692)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~-~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~ 488 (692)
..+.||..+..+.+++.+.||+|.|.+. .++++++|-|..++++++|||||+|||||||+++|.+.|..|.|....+.
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~- 453 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN- 453 (614)
T ss_pred EEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-
Confidence 8999999988889999999999999866 68999999999999999999999999999999999999999999876544
Q ss_pred eeeeecccchhhcCCCccHHHHHHHHhcc-ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 489 ~~~~~~q~~~~~l~~~~tv~e~~~~~~~~-~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
...++.|+..+.++.+.++.++++..... +..+.++.+|++|||.++..+.++++||+|||.||++|++++.+|.||||
T Consensus 454 ~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlL 533 (614)
T KOG0927|consen 454 KLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLL 533 (614)
T ss_pred cchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEe
Confidence 34578899888999999999999987764 77888999999999998889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHHHhHHHHHHHHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLDAREKELE 641 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 641 (692)
||||||||+++...+.++|.+|.|+||+||||..+|.+++++||+..++.+..|.|.|.+|.+....+...+.+
T Consensus 534 DEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~yk~~l~~~~~~e~~ 607 (614)
T KOG0927|consen 534 DEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEIYKEHLKKKRAKEDE 607 (614)
T ss_pred cCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhccCceeecCccHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999999998866655444433
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-87 Score=766.79 Aligned_cols=525 Identities=33% Similarity=0.536 Sum_probs=403.7
Q ss_pred cEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCC
Q 005532 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (692)
Q Consensus 97 ~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (692)
+|+++|++++|+ ++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ...|||++|++.++++
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~~ 82 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQEPQLDPT 82 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCCCCC
Confidence 599999999998 67899999999999999999999999999999999999999999999874 4689999999988888
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcccccc
Q 005532 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (692)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (692)
.||.||+...+.........+......+... ..+ ...++.....+....+.++.+.+..++.++++.+|+. ..++
T Consensus 83 ~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~ 157 (552)
T TIGR03719 83 KTVRENVEEGVAEIKDALDRFNEISAKFAEP--DAD-MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWDA 157 (552)
T ss_pred CcHHHHHHHhhHHHHHHHHHHHHHHHHhccC--chh-hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--cccC
Confidence 9999998643211000000000000000000 000 0011111222333344556667778889999999995 3588
Q ss_pred ccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecceEE
Q 005532 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~ 335 (692)
++.+|||||||||+|||||+.+|+||||||||+|||+.++++|.++|++.+.|||+||||++++..+||+|+++++|++.
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 89999999999999999999999999999999999999999999999887789999999999999999999999999987
Q ss_pred EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhhcccccccceeeecC
Q 005532 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (692)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~ 415 (692)
.|.|+|++|..........+...+.+.++.+.+...++.+.... .........+.++++.+. ..+...+...+.++
T Consensus 238 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 313 (552)
T TIGR03719 238 PWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKA-RQAKSKARLARYEELLSQ---EFQKRNETAEIYIP 313 (552)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhhhh---cccccCCCceeecC
Confidence 79999999987765555544455555555555555554431110 000111111222222211 01111111122233
Q ss_pred CCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecc
Q 005532 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (692)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q 495 (692)
.....++++|+++|+++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++ .++..+|++|
T Consensus 314 ~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~q 392 (552)
T TIGR03719 314 PGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVDQ 392 (552)
T ss_pred CCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEeC
Confidence 322335678999999999998899999999999999999999999999999999999999999999995 3556788888
Q ss_pred cchhhcCCCccHHHHHHHHhcc---c-cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 496 NQAEALDLDKTVLETVAEAAED---W-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~---~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
+. ..+.+..|+.+++...... . ....+..+++.+++.....++++.+|||||||||+|||+|+.+|+||||||||
T Consensus 393 ~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt 471 (552)
T TIGR03719 393 SR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPT 471 (552)
T ss_pred Cc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 63 2356778999998764321 1 12345678999999644578999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEEC-CEEEEecCChhHHHHHhH
Q 005532 572 NHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG-SNLQDYAGDYNYYLEKNL 633 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~-g~l~~~~g~~~~~~~~~~ 633 (692)
||||+.++++|.+.|.++.+|||+||||++++..+||+|++|++ |++..|.|+|++|.+.+.
T Consensus 472 ~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~~~~ 534 (552)
T TIGR03719 472 NDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEEDKK 534 (552)
T ss_pred CCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHHHHH
Confidence 99999999999999999988999999999999999999999996 688889999999976544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-87 Score=762.57 Aligned_cols=523 Identities=33% Similarity=0.586 Sum_probs=398.6
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCCC
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (692)
+|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.+++ ...|+|++|++.++...
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~-~~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDP-NERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCcCCCC
Confidence 38899999999988999999999999999999999999999999999999999999999985 35799999998887888
Q ss_pred CHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccc
Q 005532 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (692)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (692)
||.+|+..............+.+.. ....... + ................+..+.++.++|+.+|+.....+++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYA-LPEMSEE-D-----GMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhc-ccccccc-h-----HHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 9999986432110000000000000 0000000 0 0001111111222344555678889999999964344678
Q ss_pred cccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecceEEE
Q 005532 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (692)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~ 336 (692)
+.+|||||||||+|||||+.+|+||||||||+|||+.++.+|.++|++.+.|||+||||++++..+||+|+++++|++..
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred eccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chhhhHHHHHHHHHHHHhhhcccccccceeeecC
Q 005532 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (692)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~ 415 (692)
|.|+|++|..++..........+..++++++++..++.+....+. ...+....++++++.... . .+.........++
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 310 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEE-V-KPSSRQNPFIRFE 310 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccc-c-CCccccCceeeCC
Confidence 899999988765544444444455555555555555444221110 001111112222211000 0 0000000111223
Q ss_pred CCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecc
Q 005532 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (692)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q 495 (692)
.....++++|+++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++. ...+|++|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q 389 (530)
T PRK15064 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQ 389 (530)
T ss_pred CCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcc
Confidence 22233456899999999999888999999999999999999999999999999999999999999999874 35688888
Q ss_pred cchhhcCCCccHHHHHHHHhc-cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Q 005532 496 NQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~-~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~L 574 (692)
+....+....|+.+++..... ......+..+|+.+++.....++++.+|||||||||+|||+|+.+|+|||||||||||
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~L 469 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHM 469 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 643335556899998864321 1224467889999999545679999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 575 DIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 575 D~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|+.+++.|.+.|+++++|||+||||++++..+||+|++|++|+++.+.|++++|.+
T Consensus 470 D~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 470 DMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred CHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 99999999999999988999999999999999999999999999888899988865
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-85 Score=757.45 Aligned_cols=519 Identities=29% Similarity=0.491 Sum_probs=400.7
Q ss_pred CCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccC
Q 005532 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~ 173 (692)
....|+++|++|+|+++++|+|+||+|++|+++||||+|||||||||++|+|... .| + ....+|+|++|++. .
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~--~g---~-p~~g~I~~~~Q~~~-g 246 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAI--DG---I-PKNCQILHVEQEVV-G 246 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC--CC---C-CCCCEEEEEeccCC-C
Confidence 3557999999999998889999999999999999999999999999999999741 13 1 13456889999853 2
Q ss_pred CCCCHHHHHHhhhHHHHHHHHH-HHHHHHH--Hh------------hccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 174 MSRTVREEFMSAFKEEMEIAGK-LERVQKA--LE------------SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 174 ~~~Tv~e~i~~~~~~~~~~~~~-~~~~~~~--l~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
.+.|+.+.+............. ...+.+. +. ....+ ...+......+...+...+.|..+.+
T Consensus 247 ~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~~~r 323 (718)
T PLN03073 247 DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVD---KDAVSQRLEEIYKRLELIDAYTAEAR 323 (718)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccc---hHHHHHHHHHHHHHHHhcCcchHHHH
Confidence 4567777654322111111000 0000000 00 00000 01123344445556677889999999
Q ss_pred HHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHH
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~ 318 (692)
+.++|..+||.....++++.+|||||||||+||+||+.+|+||||||||+|||+.++.||.++|++.+.|||+||||+++
T Consensus 324 ~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~ 403 (718)
T PLN03073 324 AASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREF 403 (718)
T ss_pred HHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 99999999997566789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc-chhhhHHHHHHHHHHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~~~~~~~~l~rl~~ 397 (692)
+..+||+|+++++|++..|.|+|+.|...+......+...++.+++..+++++++.++...+. +..+....+.++++..
T Consensus 404 l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~ 483 (718)
T PLN03073 404 LNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGH 483 (718)
T ss_pred HHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhh
Confidence 999999999999999988999999998877777777777888888888877777776543211 1122222333444322
Q ss_pred HhhhcccccccceeeecCCC-CCCCCceEEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 005532 398 EEQIEKPFQRKQMKIRFPER-GRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~ 475 (692)
.. ++.......+.+|.. ..++.++|+++||++.|++ +.+|+++||+|++|+++||+|||||||||||++|+|+++
T Consensus 484 ~~---~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~ 560 (718)
T PLN03073 484 VD---AVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ 560 (718)
T ss_pred hh---ccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 11 111111222334432 1344578999999999964 569999999999999999999999999999999999999
Q ss_pred CCeeEEEECCccceeeeecccchhhcCCCccHHHHHHH----HhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHH
Q 005532 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (692)
Q Consensus 476 p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~tv~e~~~~----~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (692)
|++|+|.+++ ....+|++|+... ..++.++... .........+..+|+.+++.....++++.+||||||||
T Consensus 561 p~~G~I~~~~-~~~igyv~Q~~~~----~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR 635 (718)
T PLN03073 561 PSSGTVFRSA-KVRMAVFSQHHVD----GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 635 (718)
T ss_pred CCCceEEECC-ceeEEEEeccccc----cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHH
Confidence 9999999875 3457888876422 2223333211 11122345688899999996556788999999999999
Q ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 552 v~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|+|||+|+.+|+||||||||||||+.+++.+.+.|.++++|||+||||++++..+||++++|++|++..+.|+|++|.+
T Consensus 636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~~ 714 (718)
T PLN03073 636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYKK 714 (718)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHHH
Confidence 9999999999999999999999999999999999998888999999999999999999999999999989999999854
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-80 Score=704.49 Aligned_cols=442 Identities=21% Similarity=0.351 Sum_probs=351.4
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~ 164 (692)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 46999999999998889999999999999999999999999999999999999999999998732 2599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..||.+|+........ .... ....+......++.++++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~-----------~~~~---------------------~~~~~~~~~~~~~~~~l~ 131 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTK-----------KVCG---------------------VNIIDWREMRVRAAMMLL 131 (510)
T ss_pred EEeecccccCCCcHHHHhhhcccccc-----------cccc---------------------ccccCHHHHHHHHHHHHH
Confidence 99999988788899999853210000 0000 000001123356778899
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~ 321 (692)
.+|+. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.++.++.++|+ +.|+|||+||||++++..
T Consensus 132 ~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 132 RVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 56789999999999999999999999999999999999999999999988764 358999999999999999
Q ss_pred hcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhh
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (692)
+||+|+++++|++ .+.|.++++... +.++.+.+. . .. .+ .
T Consensus 211 ~~d~v~~l~~G~i-~~~g~~~~~~~~-----------------------~~~~~~~~~-~---~~------~~------~ 250 (510)
T PRK09700 211 ICDRYTVMKDGSS-VCSGMVSDVSND-----------------------DIVRLMVGR-E---LQ------NR------F 250 (510)
T ss_pred hCCEEEEEECCEE-eeecchhhCCHH-----------------------HHHHHhcCC-C---cc------cc------c
Confidence 9999999999998 567776554211 001111100 0 00 00 0
Q ss_pred cccccccceeeecCC-CCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeE
Q 005532 402 EKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (692)
Q Consensus 402 ~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~ 480 (692)
... .+. ....+.++|+++|+++.|+ .+|+++||+|++|+++||+||||||||||+++|+|+++|++|+
T Consensus 251 ~~~---------~~~~~~~~~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~ 319 (510)
T PRK09700 251 NAM---------KENVSNLAHETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGE 319 (510)
T ss_pred ccc---------ccccccCCCCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 000 000 0112345899999999874 4899999999999999999999999999999999999999999
Q ss_pred EEECCccce-----------eeeecccch-hhcCCCccHHHHHHHHhc-----------ccc----HHHHHHHHhhcCCC
Q 005532 481 VLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE-----------DWR----IDDIKGLLGRCNFK 533 (692)
Q Consensus 481 i~~~~~~~~-----------~~~~~q~~~-~~l~~~~tv~e~~~~~~~-----------~~~----~~~~~~~L~~~~l~ 533 (692)
|.++|.++. .+|++|... ..+.+..|+.+|+..... .+. ...+.++|+.+++.
T Consensus 320 I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 399 (510)
T PRK09700 320 IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK 399 (510)
T ss_pred EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence 999886431 356776531 346678899999865311 001 12467899999995
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEE
Q 005532 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRV 610 (692)
Q Consensus 534 ~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i 610 (692)
.+..++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++
T Consensus 400 ~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i 479 (510)
T PRK09700 400 CHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRI 479 (510)
T ss_pred CCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEE
Confidence 35679999999999999999999999999999999999999999999999999765 569999999999999999999
Q ss_pred EEEECCEEEEe
Q 005532 611 VEVKGSNLQDY 621 (692)
Q Consensus 611 ~~l~~g~l~~~ 621 (692)
++|++|++...
T Consensus 480 ~~l~~G~i~~~ 490 (510)
T PRK09700 480 AVFCEGRLTQI 490 (510)
T ss_pred EEEECCEEEEE
Confidence 99999999754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-80 Score=715.15 Aligned_cols=472 Identities=18% Similarity=0.302 Sum_probs=358.4
Q ss_pred CCCcEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCC----------
Q 005532 94 ISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---------- 159 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~---------- 159 (692)
.+++|+++|++++|+. .++|+||||+|++|+++||||+||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 3457999999999963 46999999999999999999999999999999999999999999987652
Q ss_pred --------------CceEEEEcccC--ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 005532 160 --------------NMKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (692)
Q Consensus 160 --------------~~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 223 (692)
...|||++|+| .+++..||.+|+...... .
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~---------------~------------------- 134 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL---------------H------------------- 134 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH---------------h-------------------
Confidence 12599999998 466778999998532100 0
Q ss_pred HHHHhhcCcccHHHHHHHHhhhcCCCc--cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHH
Q 005532 224 QRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301 (692)
Q Consensus 224 ~~~~~~~~~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~ 301 (692)
..++.....+++.++|+.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++
T Consensus 135 ----~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l 210 (623)
T PRK10261 135 ----QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210 (623)
T ss_pred ----cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH
Confidence 00112233456778899999963 356889999999999999999999999999999999999999998888877
Q ss_pred Hc----cCCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005532 302 LG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLG 377 (692)
Q Consensus 302 L~----~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 377 (692)
|+ +.|+|||+||||++++..+||+|++|++|++. ..|++.++..... ..+. ..++....
T Consensus 211 l~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~-------~~~~---------~~l~~~~~ 273 (623)
T PRK10261 211 IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQ-------HPYT---------RALLAAVP 273 (623)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCC-------Chhh---------hhhhhccC
Confidence 64 24899999999999999999999999999984 5677655432100 0000 00110000
Q ss_pred cC-CcchhhhHHHHHHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCC-----------eecccceeE
Q 005532 378 AG-ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANL 445 (692)
Q Consensus 378 ~~-~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~isl 445 (692)
.. ...++... ...+... ...+..... ..++.....+.++|+++||++.|+. ..+|+++||
T Consensus 274 ~~~~~~~~~~~--~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~ 345 (623)
T PRK10261 274 QLGAMKGLDYP--RRFPLIS----LEHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSF 345 (623)
T ss_pred cccccccccCC--ccccccc----cccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEe
Confidence 00 00000000 0000000 000000000 0001111124578999999999962 468999999
Q ss_pred EEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-------------eeeeecccchhhcCCCccHHHHHH
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVA 512 (692)
Q Consensus 446 ~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-------------~~~~~~q~~~~~l~~~~tv~e~~~ 512 (692)
+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++|+....+++..|+.+++.
T Consensus 346 ~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~ 425 (623)
T PRK10261 346 DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIM 425 (623)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHH
Confidence 9999999999999999999999999999999999999988643 246777764345777899999987
Q ss_pred HHh---cccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 005532 513 EAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585 (692)
Q Consensus 513 ~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~ 585 (692)
... .... ...+.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++
T Consensus 426 ~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~l 505 (623)
T PRK10261 426 EPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINL 505 (623)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 532 1111 235778999999964567899999999999999999999999999999999999999999999999
Q ss_pred HHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 586 ISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 586 l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|++ ++.|||+||||++++..+||+|++|++|+++. .|..+++.
T Consensus 506 l~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~-~g~~~~i~ 552 (623)
T PRK10261 506 LLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVE-IGPRRAVF 552 (623)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHh
Confidence 865 35699999999999999999999999999985 46665553
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=705.44 Aligned_cols=443 Identities=21% Similarity=0.299 Sum_probs=351.6
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEECCCC-----------ce
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MK 162 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~I~~~~~~-----------~~ 162 (692)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.. ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 469999999999988899999999999999999999999999999999999996 89999998732 34
Q ss_pred EEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
|+|++|++.+++..||+||+...... ... ...+......++.++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~---------------~~~---------------------~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEI---------------TPG---------------------GIMDYDAMYLRAQKL 127 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccc---------------ccc---------------------CCcCHHHHHHHHHHH
Confidence 99999999887889999998532100 000 000111223456788
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l 319 (692)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+ +.+.|||+||||++++
T Consensus 128 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 8999996 56789999999999999999999999999999999999999999999988774 3588999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~ 399 (692)
..+||+|+++++|++. +.|...++... ..+..+... .. .+
T Consensus 207 ~~~~d~v~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~-~~----------~~----- 246 (506)
T PRK13549 207 KAISDTICVIRDGRHI-GTRPAAGMTED-----------------------DIITMMVGR-EL----------TA----- 246 (506)
T ss_pred HHhcCEEEEEECCEEe-eecccccCCHH-----------------------HHHHHhhCc-Cc----------cc-----
Confidence 9999999999999974 55543322100 001110000 00 00
Q ss_pred hhcccccccceeeecCCCCCCCCceEEEEeEEEEcC---CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-
Q 005532 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK- 475 (692)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~---~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~- 475 (692)
..+. +. ...+.++|+++|+++.|+ ++.+|+++||+|++||++||+|+||||||||+++|+|+++
T Consensus 247 --~~~~---------~~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 247 --LYPR---------EP-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred --cccc---------cc-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000 00 112356799999999994 4579999999999999999999999999999999999998
Q ss_pred CCeeEEEECCccce-----------eeeecccch-hhcCCCccHHHHHHHHh--c--c---cc----HHHHHHHHhhcCC
Q 005532 476 PRGGEVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAA--E--D---WR----IDDIKGLLGRCNF 532 (692)
Q Consensus 476 p~~G~i~~~~~~~~-----------~~~~~q~~~-~~l~~~~tv~e~~~~~~--~--~---~~----~~~~~~~L~~~~l 532 (692)
|++|+|.++|.++. .+|+.|... ..+.+..|+.+|+.... . . .. ...+.++++.+++
T Consensus 315 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 59999999886542 356666532 23566789999986431 0 0 01 1357789999999
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccE
Q 005532 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNR 609 (692)
Q Consensus 533 ~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~ 609 (692)
.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|.++ +.|||+||||++++.++||+
T Consensus 395 ~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~ 474 (506)
T PRK13549 395 KTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDR 474 (506)
T ss_pred cCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 534678999999999999999999999999999999999999999999999988754 56999999999999999999
Q ss_pred EEEEECCEEEEecCChhHH
Q 005532 610 VVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 610 i~~l~~g~l~~~~g~~~~~ 628 (692)
+++|++|++. ..|..+++
T Consensus 475 v~~l~~G~i~-~~~~~~~~ 492 (506)
T PRK13549 475 VLVMHEGKLK-GDLINHNL 492 (506)
T ss_pred EEEEECCEEE-EEeccccC
Confidence 9999999987 44555544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-80 Score=700.17 Aligned_cols=442 Identities=25% Similarity=0.352 Sum_probs=350.9
Q ss_pred CCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ce
Q 005532 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MK 162 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~ 162 (692)
+.++|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 3457999999999998889999999999999999999999999999999999999999999998732 24
Q ss_pred EEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
|+|++|++.+++..||.+|+...... ....+.++.++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~-------------------------------------------~~~~~~~~~~~ 124 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK-------------------------------------------RQASMQKMKQL 124 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc-------------------------------------------chHHHHHHHHH
Confidence 99999999888889999998532100 00123456677
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l 319 (692)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||+|||+.+++++.++|+ +.|+|||+||||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 125 LAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI 203 (510)
T ss_pred HHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8889996 56789999999999999999999999999999999999999999999998875 3589999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~ 399 (692)
..+||+|+++++|++. +.|++.++..... ++.+........ +....
T Consensus 204 ~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~-----------------------~~~~~~~~~~~~-------~~~~~--- 249 (510)
T PRK15439 204 RQLADRISVMRDGTIA-LSGKTADLSTDDI-----------------------IQAITPAAREKS-------LSASQ--- 249 (510)
T ss_pred HHhCCEEEEEECCEEE-EecChHHcCHHHH-----------------------HHHHhCcccccc-------ccccc---
Confidence 9999999999999984 6788766532110 000000000000 00000
Q ss_pred hhcccccccceeeecCC---CCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005532 400 QIEKPFQRKQMKIRFPE---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 400 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p 476 (692)
.. ...+|. ....+.++|+++|+++ .+|+++||+|++|+++||+||||||||||+++|+|+++|
T Consensus 250 ---~~------~~~~~~~~~~~~~~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 250 ---KL------WLELPGNRRQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred ---cc------cccccccccccCCCCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 00 000110 1112456899999984 269999999999999999999999999999999999999
Q ss_pred CeeEEEECCccc-----------eeeeecccch-hhcCCCccHHHHHHHH----hcc---c--cHHHHHHHHhhcCCCcc
Q 005532 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEA----AED---W--RIDDIKGLLGRCNFKAD 535 (692)
Q Consensus 477 ~~G~i~~~~~~~-----------~~~~~~q~~~-~~l~~~~tv~e~~~~~----~~~---~--~~~~~~~~L~~~~l~~~ 535 (692)
++|+|.++|.++ ..+|++|... ..+++..|+.+++... ... . ....+.++|+.+++...
T Consensus 316 ~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 395 (510)
T PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFN 395 (510)
T ss_pred CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCC
Confidence 999999988643 1356666531 3466678999987532 010 1 11246789999999534
Q ss_pred cccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEE
Q 005532 536 MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVE 612 (692)
Q Consensus 536 ~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~ 612 (692)
..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.+.|+++ +.|||+||||++++.++||++++
T Consensus 396 ~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~ 475 (510)
T PRK15439 396 HAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLV 475 (510)
T ss_pred CccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEE
Confidence 679999999999999999999999999999999999999999999999998864 56999999999999999999999
Q ss_pred EECCEEEEecCChhHH
Q 005532 613 VKGSNLQDYAGDYNYY 628 (692)
Q Consensus 613 l~~g~l~~~~g~~~~~ 628 (692)
|++|++.. .|.-+++
T Consensus 476 l~~G~i~~-~~~~~~~ 490 (510)
T PRK15439 476 MHQGEISG-ALTGAAI 490 (510)
T ss_pred EECCEEEE-EEccccC
Confidence 99999984 3444433
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-79 Score=699.79 Aligned_cols=430 Identities=27% Similarity=0.421 Sum_probs=346.3
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEECC-----------------
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAK----------------- 158 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~I~~~~----------------- 158 (692)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.+++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998888999999999999999999999999999999999997 79999998851
Q ss_pred ------C--------------------CceEEEEccc-CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhH
Q 005532 159 ------S--------------------NMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211 (692)
Q Consensus 159 ------~--------------------~~~i~~v~Q~-~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 211 (692)
. ...++|++|+ +.+++..|+.+|+...+..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----------------------- 137 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----------------------- 137 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-----------------------
Confidence 0 1248999997 5666678999998532100
Q ss_pred HHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCC
Q 005532 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291 (692)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD 291 (692)
...+......++.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||
T Consensus 138 ----------------~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 138 ----------------IGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred ----------------cCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 0011122345677889999996 56788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005532 292 LDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367 (692)
Q Consensus 292 ~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (692)
+.+++++.++|+ +.|+|||+||||++++..+||+|++|++|++. +.|++.++.....
T Consensus 201 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~------------------ 261 (520)
T TIGR03269 201 PQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVFM------------------ 261 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHHH------------------
Confidence 999999977663 35899999999999999999999999999984 5688765432100
Q ss_pred HHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcC-----Ceecccc
Q 005532 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNR 442 (692)
Q Consensus 368 ~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~-----~~~~l~~ 442 (692)
.... .. .++ + ....+.++|+++||++.|+ ++.+|++
T Consensus 262 ------~~~~----------------~~------~~~----------~-~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 262 ------EGVS----------------EV------EKE----------C-EVEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred ------hhch----------------hh------ccc----------c-ccCCCCceEEEeccEEEeccCCCCCceEEee
Confidence 0000 00 000 0 0011345899999999995 2579999
Q ss_pred eeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEEC-Ccc---c-------------eeeeecccchhhcCCCc
Q 005532 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-EHN---V-------------LPNYFEQNQAEALDLDK 505 (692)
Q Consensus 443 isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~-~~~---~-------------~~~~~~q~~~~~l~~~~ 505 (692)
+||+|++|+++||+||||||||||+++|+|+++|++|+|.++ |.+ + ..+|++|+. .+.+..
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~--~l~~~~ 380 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY--DLYPHR 380 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc--ccCCCC
Confidence 999999999999999999999999999999999999999994 421 1 145777653 466778
Q ss_pred cHHHHHHHHhc--c-c--cHHHHHHHHhhcCCCc----ccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCH
Q 005532 506 TVLETVAEAAE--D-W--RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (692)
Q Consensus 506 tv~e~~~~~~~--~-~--~~~~~~~~L~~~~l~~----~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~ 576 (692)
|+.+++..... . . ....+.++++.+++.. +..++++.+|||||||||+|||||+.+|+||||||||++||+
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~ 460 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDP 460 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 99999975321 1 1 1235678899999963 246899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 577 PSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 577 ~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
.+++.+.+.|++ ++.|||+||||++++.++||+|++|++|++.. .|..++.
T Consensus 461 ~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 515 (520)
T TIGR03269 461 ITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVK-IGDPEEI 515 (520)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999864 35699999999999999999999999999974 4655544
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-79 Score=699.56 Aligned_cols=444 Identities=20% Similarity=0.356 Sum_probs=349.2
Q ss_pred CcEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC------
Q 005532 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN------ 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~------ 160 (692)
++|+++|++++|++ +++|+|+||+|.+||+++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 36999999999963 5799999999999999999999999999999999999986 79999987632
Q ss_pred --------ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhc
Q 005532 161 --------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (692)
Q Consensus 161 --------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (692)
..|||++|++. +.+..|+.+++..... .. ...
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~---------------~~-----------------------~~~ 125 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS---------------LH-----------------------RGM 125 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHH---------------Hh-----------------------cCC
Confidence 25999999975 4445688887642110 00 001
Q ss_pred CcccHHHHHHHHhhhcCCCcc--ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----
Q 005532 231 NLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (692)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~--~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---- 304 (692)
..+....++.++++.+|+... ..++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 112234567788999999631 35889999999999999999999999999999999999999999999988754
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchh
Q 005532 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR 384 (692)
Q Consensus 305 ~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 384 (692)
.++|||+||||++++..+||+|++|++|++. +.|...++..... ..+ ....+..
T Consensus 206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~~~~-------~~~---------~~~~~~~--------- 259 (529)
T PRK15134 206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAATLFSAPT-------HPY---------TQKLLNS--------- 259 (529)
T ss_pred cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHHHHhhCCC-------CHH---------HHHHHHh---------
Confidence 4899999999999999999999999999974 4565433221000 000 0000000
Q ss_pred hhHHHHHHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcC-----------CeecccceeEEEeCCCEE
Q 005532 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----------DRLLFNRANLTIERGEKT 453 (692)
Q Consensus 385 ~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~-----------~~~~l~~isl~i~~Ge~v 453 (692)
.+... . . +. ...+.++|+++|+++.|+ ++.+|+++||+|++|+++
T Consensus 260 ------------------~~~~~-~--~--~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~ 315 (529)
T PRK15134 260 ------------------EPSGD-P--V--PL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETL 315 (529)
T ss_pred ------------------Ccccc-c--c--cc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEE
Confidence 00000 0 0 00 112456799999999995 357999999999999999
Q ss_pred EEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-------------eeeeecccchhhcCCCccHHHHHHHHhc----
Q 005532 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAEAAE---- 516 (692)
Q Consensus 454 ~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-------------~~~~~~q~~~~~l~~~~tv~e~~~~~~~---- 516 (692)
||+||||||||||+++|+|++ |++|+|.++|.++ ..+|++|+....+.+..|+.+|+.....
T Consensus 316 ~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 316 GLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred EEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 999999999999999999998 4899999988543 1357777643346677899999976421
Q ss_pred --ccc--HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---
Q 005532 517 --DWR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--- 589 (692)
Q Consensus 517 --~~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--- 589 (692)
... ...+.++|+.+++.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|+++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 011 2357789999999534578999999999999999999999999999999999999999999999999754
Q ss_pred -CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 590 -KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 590 -~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+.|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 514 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVVE-QGDCERVF 514 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE-EcCHHHHh
Confidence 5699999999999999999999999999974 46665553
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-79 Score=670.64 Aligned_cols=452 Identities=23% Similarity=0.373 Sum_probs=360.2
Q ss_pred CcEEEEeEEEEeCCe----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC----ccEEEECCCC-------
Q 005532 96 SGVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNVIKAKSN------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~----~G~I~~~~~~------- 160 (692)
+.|+++|+++.|... ++++||||+|.+||++||||.+||||||+.++|.|++++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 379999999999543 5999999999999999999999999999999999999987 7999998742
Q ss_pred -------ceEEEEcccCcc--CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC
Q 005532 161 -------MKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (692)
Q Consensus 161 -------~~i~~v~Q~~~~--~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
..|+|++|+|.- .+..||.+-|...+. ......
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~--------------------------------------~h~~~~ 125 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALR--------------------------------------LHGKGS 125 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHH--------------------------------------Hhcccc
Confidence 369999999853 344576655532110 000111
Q ss_pred cccHHHHHHHHhhhcCCCcccc-ccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCC
Q 005532 232 LDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~-~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~ 306 (692)
..+..+++.++|+.+|+++... ++++.+|||||||||.||+||+.+|++||+||||++||+.+..++.++|+ +.|
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 3445678889999999986555 47999999999999999999999999999999999999999999988774 579
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhh
Q 005532 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (692)
Q Consensus 307 ~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~ 386 (692)
.++|+||||+..+.++||+|++|.+|++. -.|..++.+..- ...| +..++....
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iV-E~G~~~~i~~~p-------~hpY---------T~~Ll~a~p--------- 259 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIV-ETGPTEEILSNP-------QHPY---------TRGLLAAVP--------- 259 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEE-EecCHHHHHhcc-------CCcc---------cHHHHhhCC---------
Confidence 99999999999999999999999999984 446543322110 0000 001111100
Q ss_pred HHHHHHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCC-----------eecccceeEEEeCCCEEEE
Q 005532 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEKTAI 455 (692)
Q Consensus 387 ~~~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~isl~i~~Ge~v~l 455 (692)
.....+..... +.......++++++||++.|.. ..+++||||+|.+||++||
T Consensus 260 ----------------~~~~~~~~~~~-~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lgl 322 (539)
T COG1123 260 ----------------RLGDEKIIRLP-RRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322 (539)
T ss_pred ----------------Ccccccccccc-cccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEE
Confidence 00000000000 0011126788999999999973 2579999999999999999
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc------------eeeeecccchhhcCCCccHHHHHHHHhccc-----
Q 005532 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNYFEQNQAEALDLDKTVLETVAEAAEDW----- 518 (692)
Q Consensus 456 vG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~------------~~~~~~q~~~~~l~~~~tv~e~~~~~~~~~----- 518 (692)
||++|||||||.|+|+|+++|++|+|.++|.++ ....++|++...++|.+||.+.+.......
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~ 402 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccch
Confidence 999999999999999999999999999988652 245678888889999999999987654211
Q ss_pred --cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHh----cCce
Q 005532 519 --RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGT 592 (692)
Q Consensus 519 --~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~----~~~t 592 (692)
..+.+.++|+..+++...+++++++||||||||+||||||+.+|++||+||||+.||+.....+.++|.+ ++.|
T Consensus 403 ~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t 482 (539)
T COG1123 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482 (539)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCE
Confidence 1234788899999998789999999999999999999999999999999999999999999999988864 4669
Q ss_pred EEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 593 VITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 593 viivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|+||||+.++..+||||++|++|++++. |+-+...
T Consensus 483 ~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~v~ 518 (539)
T COG1123 483 YLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEKVF 518 (539)
T ss_pred EEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHHHh
Confidence 99999999999999999999999999975 4544443
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-79 Score=695.98 Aligned_cols=436 Identities=23% Similarity=0.336 Sum_probs=344.3
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC--CccEEEECCCC-----------ceE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MKI 163 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p--~~G~I~~~~~~-----------~~i 163 (692)
.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.. ..|
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 37899999999988899999999999999999999999999999999999987 79999998732 359
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..||.+|+....... ... ..........++.+++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~-------------~~~----------------------~~~~~~~~~~~~~~~l 125 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEIT-------------LPG----------------------GRMAYNAMYLRAKNLL 125 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhcccc-------------ccc----------------------cccCHHHHHHHHHHHH
Confidence 99999998878899999985321000 000 0000112234567888
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~ 320 (692)
+.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++++.++|+ +.|.|||+||||++++.
T Consensus 126 ~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~ 205 (500)
T TIGR02633 126 RELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVK 205 (500)
T ss_pred HHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence 999996433467899999999999999999999999999999999999999999988764 46889999999999999
Q ss_pred hhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ 400 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~ 400 (692)
.+||+|++|++|++. +.|...++... ..+..+... .
T Consensus 206 ~~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~----~---------------- 241 (500)
T TIGR02633 206 AVCDTICVIRDGQHV-ATKDMSTMSED-----------------------DIITMMVGR----E---------------- 241 (500)
T ss_pred HhCCEEEEEeCCeEe-eecCcccCCHH-----------------------HHHHHHhCc----c----------------
Confidence 999999999999974 33432211000 000000000 0
Q ss_pred hcccccccceeeecCC-CCCCCCceEEEEeEEEEc---CCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC
Q 005532 401 IEKPFQRKQMKIRFPE-RGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 401 ~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y---~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p 476 (692)
.... +|. ....++.+|+++|+++.| +++.+|+++||+|.+||++||+||||||||||+++|+|+++|
T Consensus 242 ~~~~---------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 312 (500)
T TIGR02633 242 ITSL---------YPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPG 312 (500)
T ss_pred cccc---------ccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000 000 001234589999999999 345799999999999999999999999999999999999985
Q ss_pred -CeeEEEECCccce-----------eeeecccch-hhcCCCccHHHHHHHHh----cc---cc----HHHHHHHHhhcCC
Q 005532 477 -RGGEVLLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAA----ED---WR----IDDIKGLLGRCNF 532 (692)
Q Consensus 477 -~~G~i~~~~~~~~-----------~~~~~q~~~-~~l~~~~tv~e~~~~~~----~~---~~----~~~~~~~L~~~~l 532 (692)
++|+|.++|.++. .+|++|... ..+.+..|+.+|+.... .. .. ...+.++|+.+++
T Consensus 313 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 392 (500)
T TIGR02633 313 KFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKV 392 (500)
T ss_pred CCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCc
Confidence 8999999886541 356666532 24667789999986521 00 01 2347789999999
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccE
Q 005532 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNR 609 (692)
Q Consensus 533 ~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~ 609 (692)
.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++.++||+
T Consensus 393 ~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~ 472 (500)
T TIGR02633 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDR 472 (500)
T ss_pred cCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCE
Confidence 544578999999999999999999999999999999999999999999999888754 56999999999999999999
Q ss_pred EEEEECCEEEE
Q 005532 610 VVEVKGSNLQD 620 (692)
Q Consensus 610 i~~l~~g~l~~ 620 (692)
+++|++|++..
T Consensus 473 v~~l~~G~i~~ 483 (500)
T TIGR02633 473 VLVIGEGKLKG 483 (500)
T ss_pred EEEEECCEEEE
Confidence 99999999874
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-79 Score=695.25 Aligned_cols=441 Identities=22% Similarity=0.336 Sum_probs=347.7
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~ 164 (692)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 36999999999998889999999999999999999999999999999999999999999998632 2599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..||.+|+....... . ....+.+....++.++++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~-------------~-----------------------~~~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPH-------------K-----------------------GGIVNRRLLNYEAREQLE 126 (501)
T ss_pred EEEechhccCCCCHHHHHHhccccc-------------c-----------------------cCCCCHHHHHHHHHHHHH
Confidence 9999998888889999985321000 0 000011223456778899
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~ 321 (692)
.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|+ +.|.|||+||||++++..
T Consensus 127 ~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999998775 358999999999999999
Q ss_pred hcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhh
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (692)
+||+|++|++|++.. .+ ..+..... ......+.... .
T Consensus 206 ~~d~i~~l~~G~i~~-~~--~~~~~~~~--------------------~~~~~~~~~~~--------------------~ 242 (501)
T PRK11288 206 LCDAITVFKDGRYVA-TF--DDMAQVDR--------------------DQLVQAMVGRE--------------------I 242 (501)
T ss_pred hCCEEEEEECCEEEe-ec--CccccCCH--------------------HHHHHHhcCCC--------------------c
Confidence 999999999999742 22 11100000 00000110000 0
Q ss_pred cccccccceeeecCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEE
Q 005532 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (692)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i 481 (692)
... ...++ ...+..+++++|+++. .+|+++||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus 243 ~~~-------~~~~~-~~~~~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 243 GDI-------YGYRP-RPLGEVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred ccc-------ccccc-cCCCCcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 000 00000 1123457999999842 58999999999999999999999999999999999999999999
Q ss_pred EECCccce-----------eeeecccch-hhcCCCccHHHHHHHHhc------c------ccHHHHHHHHhhcCCCcccc
Q 005532 482 LLGEHNVL-----------PNYFEQNQA-EALDLDKTVLETVAEAAE------D------WRIDDIKGLLGRCNFKADML 537 (692)
Q Consensus 482 ~~~~~~~~-----------~~~~~q~~~-~~l~~~~tv~e~~~~~~~------~------~~~~~~~~~L~~~~l~~~~~ 537 (692)
.++|.++. .+|++|+.. ..+.+..|+.+++..... . .....+.++|+.+++..+..
T Consensus 311 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390 (501)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc
Confidence 99886542 246666532 246677899999864211 0 01235778999999954567
Q ss_pred cccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEE
Q 005532 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVK 614 (692)
Q Consensus 538 ~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~ 614 (692)
++++.+|||||||||+|||+|+.+|+||||||||+|||+.+++.|.++|.++ +.|||+||||++++..+||++++|+
T Consensus 391 ~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~ 470 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMR 470 (501)
T ss_pred cCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999988654 5699999999999999999999999
Q ss_pred CCEEEEecCChhHHH
Q 005532 615 GSNLQDYAGDYNYYL 629 (692)
Q Consensus 615 ~g~l~~~~g~~~~~~ 629 (692)
+|++.. .|..++|.
T Consensus 471 ~g~i~~-~~~~~~~~ 484 (501)
T PRK11288 471 EGRIAG-ELAREQAT 484 (501)
T ss_pred CCEEEE-EEccccCC
Confidence 999874 56666654
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-79 Score=693.67 Aligned_cols=437 Identities=23% Similarity=0.365 Sum_probs=346.5
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~ 164 (692)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 35999999999998889999999999999999999999999999999999999999999998732 2599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..||+||+....... .. ....+......++.++++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~--------------~~---------------------~~~~~~~~~~~~~~~~l~ 127 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFV--------------NR---------------------FGRIDWKKMYAEADKLLA 127 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccc--------------cc---------------------cCccCHHHHHHHHHHHHH
Confidence 9999998888899999985321000 00 000001122345678899
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~ 321 (692)
.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+ +.+.|||+||||++++..
T Consensus 128 ~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 128 RLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99996 46789999999999999999999999999999999999999999999987764 358899999999999999
Q ss_pred hcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhh
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (692)
+||+|+++++|++. ..|...+.... ..++..... . +. .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~~----~----------~~----~ 244 (501)
T PRK10762 207 ICDDVTVFRDGQFI-AEREVADLTED-----------------------SLIEMMVGR----K----------LE----D 244 (501)
T ss_pred hCCEEEEEeCCEEE-EecCcCcCCHH-----------------------HHHHHhcCC----C----------cc----c
Confidence 99999999999974 44543221100 001110000 0 00 0
Q ss_pred cccccccceeeecCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEE
Q 005532 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (692)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i 481 (692)
..+ . .+. .++.++|+++|+++ .+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|
T Consensus 245 ~~~------~--~~~--~~~~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 245 QYP------R--LDK--APGEVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred ccc------c--ccc--CCCCcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 000 0 010 12345799999985 36999999999999999999999999999999999999999999
Q ss_pred EECCccc-----------eeeeecccch-hhcCCCccHHHHHHHHhc----c----c----cHHHHHHHHhhcCCCcccc
Q 005532 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----D----W----RIDDIKGLLGRCNFKADML 537 (692)
Q Consensus 482 ~~~~~~~-----------~~~~~~q~~~-~~l~~~~tv~e~~~~~~~----~----~----~~~~~~~~L~~~~l~~~~~ 537 (692)
.++|.++ ..+|++|+.. ..+.+..|+.+++..... . . ....+.++++.+++.....
T Consensus 310 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 389 (501)
T PRK10762 310 TLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389 (501)
T ss_pred EECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc
Confidence 9988554 1467777532 245677899999864210 0 0 1234778999999953457
Q ss_pred cccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEE
Q 005532 538 DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVK 614 (692)
Q Consensus 538 ~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~ 614 (692)
++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|+
T Consensus 390 ~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~ 469 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMH 469 (501)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999999876 3599999999999999999999999
Q ss_pred CCEEEEecCChh
Q 005532 615 GSNLQDYAGDYN 626 (692)
Q Consensus 615 ~g~l~~~~g~~~ 626 (692)
+|++.. .|+.+
T Consensus 470 ~G~i~~-~~~~~ 480 (501)
T PRK10762 470 EGRISG-EFTRE 480 (501)
T ss_pred CCEEEE-Eeccc
Confidence 999873 34433
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-79 Score=652.68 Aligned_cols=487 Identities=32% Similarity=0.505 Sum_probs=392.1
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCC
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~ 174 (692)
...|.+.+++..||++.+|.+.++++..|.++||||+||+|||||||+|+. |.|... -++|+..-
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-------~veqE~~g-- 142 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-------HVEQEVRG-- 142 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-------Cchhheec--
Confidence 345999999999999999999999999999999999999999999999986 444322 12222100
Q ss_pred CCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcc-cHHHHHHHHhhhcCCCcccc
Q 005532 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-TLDAKVSKLMPELGFTADDG 253 (692)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~ll~~lgl~~~~~ 253 (692)
..| +.+.... + .|..... ++.+ ...+... .+++...++|..+||+++..
T Consensus 143 ~~t--~~~~~~l-----------------~---~D~~~~d-fl~~-------e~~l~~~~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 143 DDT--EALQSVL-----------------E---SDTERLD-FLAE-------EKELLAGLTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred cch--HHHhhhh-----------------h---ccHHHHH-HHHh-------hhhhhccchHHHHHHHHHHhCCCCHHHH
Confidence 000 0000000 0 0000000 0000 0001111 23333444899999999999
Q ss_pred ccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecce
Q 005532 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (692)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~ 333 (692)
.+|+.+||||||+|++|||||..+||||||||||||||..++.||.++|+.++.|+|+||||+.|++.+|+.|+++++-+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-cchhhhHHHHHHHHHHHHhhhcccccccceee
Q 005532 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKI 412 (692)
Q Consensus 334 ~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~ 412 (692)
+.+|.|||+.|+..+.+....+...|+.+.+..+..+..+++++-.+ .+..++++.+.++++- ...++.......+
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~---~lk~~~~~~~~~~ 349 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLP---ALKSTLIEVLIGF 349 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCC---CCCccceecccce
Confidence 99999999999999999888888889888777777888888876422 2233444444444322 2223333444556
Q ss_pred ecCCC-CCCCCceEEEEeEEEEcCCe--ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce
Q 005532 413 RFPER-GRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489 (692)
Q Consensus 413 ~~~~~-~~~~~~~l~~~~l~~~y~~~--~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~ 489 (692)
.||+. .....+.|++.+|+|.|+.. +++.++++.++.-+++++||+||+||||+++++.|.+.|..|.+.+.+ .++
T Consensus 350 ~fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-r~r 428 (582)
T KOG0062|consen 350 LFPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-RLR 428 (582)
T ss_pred ecCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-cce
Confidence 67773 45677899999999999744 599999999999999999999999999999999999999999998875 567
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
.+|+.|..-..++...+..+.+.........++++.-|+.||++++....++.+||||||.||+||.+.+.+|++|+|||
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDE 508 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDE 508 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecC
Confidence 88998875555544555555555544444677899999999999998888999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||.++...|.++|+.|.|.||+||||.+|+..+|+.+|+.++|++..+.|+.++|..
T Consensus 509 PTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ieg~~~~yKk 569 (582)
T KOG0062|consen 509 PTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVEDGKVTPIEGGIDKYKK 569 (582)
T ss_pred CCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEcCCcEEeeeccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999988854
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-78 Score=686.94 Aligned_cols=435 Identities=22% Similarity=0.272 Sum_probs=334.7
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v 166 (692)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 5999999999998889999999999999999999999999999999999999999999987632 138999
Q ss_pred cccCccCC--------CCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 167 SQEFEVSM--------SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 167 ~Q~~~~~~--------~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
+|++.... ..|+.+++... ....++
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~ 115 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDE-----------------------------------------------VKDPAR 115 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccc-----------------------------------------------hhHHHH
Confidence 99864311 23444443100 011345
Q ss_pred HHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecC
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd 315 (692)
+.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||
T Consensus 116 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 116 CEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 66788888986 567899999999999999999999999999999999999999999999988753 47899999999
Q ss_pred HHHHHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHH
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl 395 (692)
++++.++||+|++|++|++. +.|++.++.... .+.++... +++
T Consensus 195 ~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~~-------------~~~ 237 (490)
T PRK10938 195 FDEIPDFVQFAGVLADCTLA-ETGEREEILQQA-----------------------LVAQLAHS-------------EQL 237 (490)
T ss_pred HHHHHhhCCEEEEEECCEEE-EeCCHHHHhcch-----------------------hhhhhhhh-------------hcc
Confidence 99999999999999999984 557654432110 00000000 000
Q ss_pred HHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC
Q 005532 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~ 475 (692)
.. ...+..... ..+.......++|+++|+++.|+++.+|+++||+|++||++||+||||||||||+++|+|+.+
T Consensus 238 ~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 238 EG---VQLPEPDEP---SARHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred Cc---cccCccccc---ccccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 00 000000000 000001124568999999999988889999999999999999999999999999999999887
Q ss_pred C-CeeEEEECCccc-----------eeeeecccchhhcCCCccHHHHHHHHh----c---ccc---HHHHHHHHhhcCCC
Q 005532 476 P-RGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKTVLETVAEAA----E---DWR---IDDIKGLLGRCNFK 533 (692)
Q Consensus 476 p-~~G~i~~~~~~~-----------~~~~~~q~~~~~l~~~~tv~e~~~~~~----~---~~~---~~~~~~~L~~~~l~ 533 (692)
| ++|+|.++|.++ ..+|+.|..........++.+++.... . ... ...+.++++.+++.
T Consensus 312 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 312 QGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred cccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 5 699999987543 134666543211112345665554221 0 011 23577899999996
Q ss_pred cccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---Cc-eEEEEecCHHHHHh-hcc
Q 005532 534 ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KG-TVITVSHDRYFVKQ-IVN 608 (692)
Q Consensus 534 ~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~-tviivSHd~~~l~~-~~d 608 (692)
....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++|.++ ++ |||+||||++++.. +||
T Consensus 392 ~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d 471 (490)
T PRK10938 392 KRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITH 471 (490)
T ss_pred hhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhhe
Confidence 43678999999999999999999999999999999999999999999999999875 23 69999999999987 599
Q ss_pred EEEEEECCEEEEec
Q 005532 609 RVVEVKGSNLQDYA 622 (692)
Q Consensus 609 ~i~~l~~g~l~~~~ 622 (692)
++++|++|++..+.
T Consensus 472 ~v~~l~~G~i~~~~ 485 (490)
T PRK10938 472 RLEFVPDGDIYRYV 485 (490)
T ss_pred eEEEecCCceEEee
Confidence 99999999988653
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-78 Score=683.58 Aligned_cols=437 Identities=20% Similarity=0.315 Sum_probs=340.4
Q ss_pred EEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEEEcc
Q 005532 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQ 168 (692)
Q Consensus 100 i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~v~Q 168 (692)
++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 3689999998889999999999999999999999999999999999999999999998742 35999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..||.+|+...... .... ..+.....+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~--------------~~~~----------------------~~~~~~~~~~~~~~l~~~~l 124 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYP--------------TKGM----------------------FVDQDKMYRDTKAIFDELDI 124 (491)
T ss_pred ccccccCCCHHHHhhccccc--------------cccc----------------------ccCHHHHHHHHHHHHHHcCC
Confidence 99887889999998532100 0000 00011123456678888998
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~~d~ 325 (692)
. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|+ +.+.|||+||||++++..+||+
T Consensus 125 ~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 125 D-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred C-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 6 46788899999999999999999999999999999999999999999988774 3589999999999999999999
Q ss_pred EEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhhcccc
Q 005532 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPF 405 (692)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~ 405 (692)
|+++++|++. ..|...+... .+.++.+.+. . ....
T Consensus 204 i~~l~~G~i~-~~~~~~~~~~-----------------------~~~~~~~~~~-~-------------------~~~~- 238 (491)
T PRK10982 204 ITILRDGQWI-ATQPLAGLTM-----------------------DKIIAMMVGR-S-------------------LTQR- 238 (491)
T ss_pred EEEEECCEEE-eecChhhCCH-----------------------HHHHHHHhCC-C-------------------cccc-
Confidence 9999999974 4444222100 0001111000 0 0000
Q ss_pred cccceeeecCC-CCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEEC
Q 005532 406 QRKQMKIRFPE-RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (692)
Q Consensus 406 ~~~~~~~~~~~-~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~ 484 (692)
++. ...+.+++|+++|+++.| +.+|+++||+|++||++||+|+||||||||+++|+|+.+|++|+|.++
T Consensus 239 --------~~~~~~~~~~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 308 (491)
T PRK10982 239 --------FPDKENKPGEVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLH 308 (491)
T ss_pred --------cccccCCCCCcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEEC
Confidence 000 011234579999999985 469999999999999999999999999999999999999999999998
Q ss_pred Cccce-----------eeeecccch-hhcCCCccHHHH-----HHHHhcc---cc----HHHHHHHHhhcCCCccccccc
Q 005532 485 EHNVL-----------PNYFEQNQA-EALDLDKTVLET-----VAEAAED---WR----IDDIKGLLGRCNFKADMLDRK 540 (692)
Q Consensus 485 ~~~~~-----------~~~~~q~~~-~~l~~~~tv~e~-----~~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~ 540 (692)
|.++. .+|++|... ..+.++.++.++ +...... .. ...+..+++.+++.....+++
T Consensus 309 g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 388 (491)
T PRK10982 309 GKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQ 388 (491)
T ss_pred CEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccc
Confidence 86542 345655432 234456666555 3221110 11 234678899999954457999
Q ss_pred CCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHh---cCceEEEEecCHHHHHhhccEEEEEECCE
Q 005532 541 VSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE---YKGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (692)
Q Consensus 541 ~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~---~~~tviivSHd~~~l~~~~d~i~~l~~g~ 617 (692)
+.+|||||||||+|||+|+.+|+||||||||+|||+.+++.+.+.|.+ .++|||+||||++++..+|||+++|++|+
T Consensus 389 ~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~ 468 (491)
T PRK10982 389 IGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGL 468 (491)
T ss_pred cccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999998854 46799999999999999999999999999
Q ss_pred EEEecCChhHHH
Q 005532 618 LQDYAGDYNYYL 629 (692)
Q Consensus 618 l~~~~g~~~~~~ 629 (692)
+..+ +....|.
T Consensus 469 i~~~-~~~~~~~ 479 (491)
T PRK10982 469 VAGI-VDTKTTT 479 (491)
T ss_pred EEEE-EccccCC
Confidence 9843 3334443
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-74 Score=597.79 Aligned_cols=517 Identities=32% Similarity=0.560 Sum_probs=411.8
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCC
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (692)
..|.|+|.+.+-.++.+|.|.||.|-.|.++|||||||-||||||+-|+.-- ..+. +++.+-||.|+... .+
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ra------laIP-pnIDvLlCEQEvva-d~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARA------LAIP-PNIDVLLCEQEVVA-DS 334 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhh------ccCC-CCCceEeeeeeeee-cC
Confidence 4599999999998999999999999999999999999999999999997531 1111 35678899998654 34
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcccccc
Q 005532 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (692)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (692)
.|..+.++.+-.......+...++...++.- +....+++-+-+ .....++++..+.+++.+|..|||+.+.-++
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~G--d~taaErl~~v~----~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEG--DTTAAERLKEVA----DELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcC--chHHHHHHHHHH----HHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 4445555433222333333333333333321 111222222222 2334578889999999999999999999999
Q ss_pred ccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecceEE
Q 005532 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~ 335 (692)
|...+|||||+||+|||||+..|.+|.|||||||||....-||.++|+.+.+|++|||||-.|++.+|+.|+++++.++.
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHH-HHHHHHHHHH---------hhhcccc
Q 005532 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSA-EKKLERLQEE---------EQIEKPF 405 (692)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~-~~~l~rl~~~---------~~~~~~~ 405 (692)
+|.|||..|-....+........|+++++.++.+.. .+.++.++... ...+.|-+.. .....|+
T Consensus 489 yYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa------~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapE 562 (807)
T KOG0066|consen 489 YYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKA------EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPE 562 (807)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHhccccccCccccccCHH
Confidence 999999988777776666666677776665543321 11111111111 1112221110 0000111
Q ss_pred -----cccceeeecCCCCCCCCceEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCee
Q 005532 406 -----QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (692)
Q Consensus 406 -----~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G 479 (692)
..-.++|.||++.....|++-+.+|+|.|+ .+++|.+++|-|.--.+||||||||.||||||++|.|-+.|..|
T Consensus 563 LL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 563 LLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred HHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 112457889988888889999999999995 57899999999999999999999999999999999999999999
Q ss_pred EEEECCccceeeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 480 EVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 480 ~i~~~~~~~~~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
+..-+ +.+.+++|.|+..+.+....|..+++...... ..++++..|+.||+..+...-.+..|||||+.||+||-.-+
T Consensus 643 E~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl-pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal 720 (807)
T KOG0066|consen 643 ELRKN-HRLRIGWFDQHANEALNGEETPVEYLQRKFNL-PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELAL 720 (807)
T ss_pred hhhcc-ceeeeechhhhhHHhhccccCHHHHHHHhcCC-ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhc
Confidence 98765 57888999998888888889999998765442 45678999999999876666788899999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHHHhHH
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNLD 634 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~~~~~ 634 (692)
..|+|||||||||+||++++..|.++|++|.|+|||||||..++...-...|++++..|.+..|.|++|...-.+
T Consensus 721 ~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeDYkkEVLd 795 (807)
T KOG0066|consen 721 GGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFEDYKKEVLD 795 (807)
T ss_pred CCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccCChhhccccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999877789999999999999999999764443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-73 Score=662.60 Aligned_cols=538 Identities=26% Similarity=0.409 Sum_probs=370.6
Q ss_pred hhhcchhhHHHHhHHHHHHhhhccCccccccccccccCCCCCCCCCCCcEEEEeEEEEeCCee---ceeeeeEEEECCcE
Q 005532 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT---VLKDVTWEVKKGEK 125 (692)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ls~~y~~~~---vL~~vsl~i~~Ge~ 125 (692)
+....+...++..++.+...+|+..++.+..+..... . .......+.|+++||+|+|+.+| +|+|+||.|++|+.
T Consensus 304 Lgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~-~-~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~ 381 (1228)
T KOG0055|consen 304 LGQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKG-G-RVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQT 381 (1228)
T ss_pred hhccccchHHHhccccchHHHHHHhcCCCCCCccccc-C-CcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCE
Confidence 4455666678888888888888887766555554411 1 12224566799999999998875 99999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc----------eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHH
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (692)
Q Consensus 126 ~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~ 195 (692)
++|||||||||||++++|.++|+|++|+|.++|.+. .||.|+|+|. +++.||+|||..+-.+. .
T Consensus 382 valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePv-lF~~tI~eNI~~G~~da-----t 455 (1228)
T KOG0055|consen 382 VALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPV-LFATTIRENIRYGKPDA-----T 455 (1228)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechh-hhcccHHHHHhcCCCcc-----c
Confidence 999999999999999999999999999999998654 5999999995 48899999997543220 0
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHc
Q 005532 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (692)
Q Consensus 196 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 275 (692)
.+++.++.... ...+++..+.+ |+.+..+++ ..+|||||||||||||||+
T Consensus 456 ~~~i~~a~k~a-na~~fi~~lp~----------------------------g~~T~vge~-g~qLSGGQKQRIAIARalv 505 (1228)
T KOG0055|consen 456 REEIEEAAKAA-NAHDFILKLPD----------------------------GYDTLVGER-GVQLSGGQKQRIAIARALV 505 (1228)
T ss_pred HHHHHHHHHHc-cHHHHHHhhHH----------------------------hhcccccCC-CCCCChHHHHHHHHHHHHH
Confidence 01111111111 11122222221 222222333 4679999999999999999
Q ss_pred cCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEecceEEE---------eccChHHH
Q 005532 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRT---------YEGNYSQY 344 (692)
Q Consensus 276 ~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~---------~~G~y~~~ 344 (692)
.+|+|||||||||+||+++.+.+.+.|.+ .|.|.|+|+|++..+.+ +|+|+++++|++.. ..|.|.+.
T Consensus 506 ~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G~Y~~l 584 (1228)
T KOG0055|consen 506 RNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGGIYSSL 584 (1228)
T ss_pred hCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccchHHHH
Confidence 99999999999999999999999999864 58999999999999988 99999999998642 13555544
Q ss_pred HHHHHHHH------------HHHHHH-------------------------H-----------------H--------H-
Q 005532 345 VLEKAAWI------------ESQYAA-------------------------W-----------------E--------K- 361 (692)
Q Consensus 345 ~~~~~~~~------------~~~~~~-------------------------~-----------------~--------~- 361 (692)
+....... ...... . . |
T Consensus 585 v~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~~~i~k~~~pe~~ 664 (1228)
T KOG0055|consen 585 VRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDEKVSFWRIFKLNKPEWP 664 (1228)
T ss_pred HHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccccccccccHHHHHHhccchhH
Confidence 32210000 000000 0 0 0
Q ss_pred ---------------------------------HHHHH---------------------------------HHHHHHHHH
Q 005532 362 ---------------------------------QQREI---------------------------------EQTKDLINR 375 (692)
Q Consensus 362 ---------------------------------~~~~~---------------------------------~~~~~~i~~ 375 (692)
-..++ +++..+++.
T Consensus 665 ~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~~~f~~~ge~Lt~R~R~ 744 (1228)
T KOG0055|consen 665 YLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQHYFFGIAGEKLTKRLRS 744 (1228)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 000000000
Q ss_pred ------hcc-------CCcchhhh--------------------------------------------------------
Q 005532 376 ------LGA-------GANSGRAS-------------------------------------------------------- 386 (692)
Q Consensus 376 ------l~~-------~~~~~~~~-------------------------------------------------------- 386 (692)
+.. ..+++...
T Consensus 745 ~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~lalv~la~~Pll~~~ 824 (1228)
T KOG0055|consen 745 MMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWRLALVVLATFPLLILS 824 (1228)
T ss_pred HHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 00000000
Q ss_pred ----------------H-----------HHHHH---------HHHHH-H-hhhcccccc---------------------
Q 005532 387 ----------------S-----------AEKKL---------ERLQE-E-EQIEKPFQR--------------------- 407 (692)
Q Consensus 387 ----------------~-----------~~~~l---------~rl~~-~-~~~~~~~~~--------------------- 407 (692)
. +..++ +++.. + ....+|...
T Consensus 825 ~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~i~gl~f~~sqs~~~~ 904 (1228)
T KOG0055|consen 825 GYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGLISGLGFGFSQSLLFF 904 (1228)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00000 00000 0 000000000
Q ss_pred --------------------------------------------------------------cceeeecCC-CC---CCC
Q 005532 408 --------------------------------------------------------------KQMKIRFPE-RG---RSG 421 (692)
Q Consensus 408 --------------------------------------------------------------~~~~~~~~~-~~---~~~ 421 (692)
....++.+. .+ ..-
T Consensus 905 ~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~~~~~~~~~ 984 (1228)
T KOG0055|consen 905 VYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKPTIDPDSTSGGKLPNV 984 (1228)
T ss_pred HHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCccccc
Confidence 000011000 01 011
Q ss_pred CceEEEEeEEEEcCCe---ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 422 RSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~---~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
+.-|+++||+|.||.+ ++|+|+||+|++|+.+|||||+||||||.+.+|-+++.|++|.|.+||.+++
T Consensus 985 ~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~ 1064 (1228)
T KOG0055|consen 985 KGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRK 1064 (1228)
T ss_pred eeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHH
Confidence 2349999999999865 5999999999999999999999999999999999999999999999998874
Q ss_pred -eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCC------cccccc----cCCCCCHHHHHHHHHHHHh
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK------ADMLDR----KVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~------~~~~~~----~~~~LSgGqkqrv~LAral 558 (692)
.+.+.|.+ .| ++.|++||+..+......+++.+.++..+.. ++-.|. +..+||||||||+|||||+
T Consensus 1065 ~i~lVsQEP--~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAi 1141 (1228)
T KOG0055|consen 1065 QIGLVSQEP--VL-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAI 1141 (1228)
T ss_pred hcceeccCc--hh-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHH
Confidence 23455543 34 6899999999884334556666655554321 122344 4459999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+++|+||||||.||+||.++.+.++++|.+. +.|.|+|+|++..+.+ ||.|+++++|++++ .|+.++...
T Consensus 1142 lRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~VvE-~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1142 LRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKVVE-QGTHDELLA 1213 (1228)
T ss_pred HcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEEEe-cccHHHHHh
Confidence 9999999999999999999999999999875 4699999999999988 99999999999996 588877765
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-73 Score=647.38 Aligned_cols=420 Identities=25% Similarity=0.369 Sum_probs=321.7
Q ss_pred eEEEEeCCe-eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEE-----------ECCCC---------
Q 005532 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN--------- 160 (692)
Q Consensus 102 ~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~-----------~~~~~--------- 160 (692)
+++++|+.. .+|++++ .+++|+++||+||||||||||+++|+|+++|++|+|. ++|..
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 489999875 5999999 9999999999999999999999999999999999997 55421
Q ss_pred ---ceEEEEcccCccCC---CCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCccc
Q 005532 161 ---MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~---~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (692)
.++++.+|.....+ ..||.+++.. ..
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~------------------------------------------------~~ 188 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK------------------------------------------------VD 188 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh------------------------------------------------hh
Confidence 23566565433222 2366665421 00
Q ss_pred HHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccC--CCeEEEE
Q 005532 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVII 312 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~--~~tvI~v 312 (692)
...++.++++.+|+. ...++++.+|||||||||+||+||+.+|+||||||||++||+.++.++.++|++. ++|||+|
T Consensus 189 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 123456778888986 5679999999999999999999999999999999999999999999998877543 8999999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKL 392 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l 392 (692)
|||++++..+||+|+++.++. |.|..+....... .. ..+++..+.. . . .+
T Consensus 268 sHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~~------------~~---i~~~~~~~~~-----~----e-~~ 317 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGVR------------VG---INEYLKGYLP-----E----E-NM 317 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCCc-----cccceecchhHHH------------Hh---HHHHHHhcch-----h----h-hh
Confidence 999999999999999997542 2221111110000 00 0011110000 0 0 00
Q ss_pred HHHHHHhhhcccccccceeeecCCC--CCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 005532 393 ERLQEEEQIEKPFQRKQMKIRFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (692)
Q Consensus 393 ~rl~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L 470 (692)
+.. .. ...+.+++. ...+.++++++|+++.|++. .|+++||+|++||++||+||||||||||+++|
T Consensus 318 -~~~-----~~-----~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 318 -RIR-----PE-----PIEFEERPPRDESERETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred -hcc-----cc-----CcceecCCCccccCCceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHH
Confidence 000 00 000111111 11345689999999999875 48999999999999999999999999999999
Q ss_pred hcCCCCCeeEEEECCccceeeeecccchhhcCCCccHHHHHHHHhcccc-HHHHHHHHhhcCCCcccccccCCCCCHHHH
Q 005532 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (692)
Q Consensus 471 ~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqk 549 (692)
+|+++|++|+|.++ +..+|++|.. .+.+..|+.+++........ ...+.++|+.+++. +..++++.+||||||
T Consensus 386 ~Gl~~p~~G~I~~~---~~i~y~~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 386 AGVLKPDEGEVDPE---LKISYKPQYI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGEL 459 (590)
T ss_pred hCCCCCCceEEEEe---eeEEEecccc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHH
Confidence 99999999999885 4567888764 34578899999876422221 23467899999995 678999999999999
Q ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 550 qrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|||+|||||+.+|+||||||||+|||+.++..+.+.|+++ ++|||+||||++++..+||||++|++ ++..
T Consensus 460 QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~ 533 (590)
T PRK13409 460 QRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGK 533 (590)
T ss_pred HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-ccee
Confidence 9999999999999999999999999999999999999876 56999999999999999999999975 5543
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-72 Score=576.90 Aligned_cols=447 Identities=21% Similarity=0.337 Sum_probs=359.5
Q ss_pred CCCcEEEEeEEEEeC----CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC----
Q 005532 94 ISSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---- 160 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~---- 160 (692)
.++.++++|++..|. ...++++|||+|.+||.+||||++|||||-..+.|+|+++. -+|+|.++|.+
T Consensus 3 ~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~ 82 (534)
T COG4172 3 TMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAA 82 (534)
T ss_pred CCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcC
Confidence 356799999999995 45799999999999999999999999999999999999975 36899998753
Q ss_pred ----------ceEEEEcccCccC--CCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 005532 161 ----------MKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (692)
Q Consensus 161 ----------~~i~~v~Q~~~~~--~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (692)
.+|++++|+|... +-.||..-+...+ +...
T Consensus 83 se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l--------------------------------------~~Hr 124 (534)
T COG4172 83 SERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVL--------------------------------------RLHR 124 (534)
T ss_pred CHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHH--------------------------------------HHHh
Confidence 3799999998532 3234443332110 1122
Q ss_pred hcCcccHHHHHHHHhhhcCCCcc--ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---
Q 005532 229 AVNLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--- 303 (692)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~--~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~--- 303 (692)
.+.....++++.++|+.+|++++ .++.++.+|||||+|||+||.||+.+|++||.||||.+||.....++.++|+
T Consensus 125 g~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq 204 (534)
T COG4172 125 GLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQ 204 (534)
T ss_pred cccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHH
Confidence 34455667889999999999743 4678899999999999999999999999999999999999999998888775
Q ss_pred -cCCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Q 005532 304 -KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (692)
Q Consensus 304 -~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 382 (692)
+.|.++++||||+..+.+++|+|++|.+|++. -.|.....+.. ....| ++.+++.
T Consensus 205 ~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv-E~~~t~~lF~~-------PqHpY---------Tr~Ll~a------- 260 (534)
T COG4172 205 AELGMAILFITHDLGIVRKFADRVYVMQHGEIV-ETGTTETLFAA-------PQHPY---------TRKLLAA------- 260 (534)
T ss_pred HHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe-ecCcHHHHhhC-------CCChH---------HHHHHhc-------
Confidence 47999999999999999999999999999974 33432221110 00011 1111110
Q ss_pred hhhhHHHHHHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCC-----------eecccceeEEEeCCC
Q 005532 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGE 451 (692)
Q Consensus 383 ~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~~l~~isl~i~~Ge 451 (692)
.|... .++.+....++++.++|...|+- ..+++++||++.+|+
T Consensus 261 --------------------eP~g~------~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gq 314 (534)
T COG4172 261 --------------------EPSGD------PPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQ 314 (534)
T ss_pred --------------------CCCCC------CCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCC
Confidence 11111 02223346678999999999952 246899999999999
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------eeeecccchhhcCCCccHHHHHHHHhc--
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAEAAE-- 516 (692)
Q Consensus 452 ~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------------~~~~~q~~~~~l~~~~tv~e~~~~~~~-- 516 (692)
.+||||.+|||||||-.+|.+++++. |+|.++|.++. ...++|++...+.|.+||.+.+.+...
T Consensus 315 TlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh 393 (534)
T COG4172 315 TLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVH 393 (534)
T ss_pred eEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhc
Confidence 99999999999999999999999886 99999998763 245677777788999999999876532
Q ss_pred ------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc-
Q 005532 517 ------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY- 589 (692)
Q Consensus 517 ------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~- 589 (692)
....+.+.+.|..+|++....+++++++|||||||++||||++.+|.+++||||||.||..-...+.++|++.
T Consensus 394 ~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ 473 (534)
T COG4172 394 EPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQ 473 (534)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHH
Confidence 1224568889999999999999999999999999999999999999999999999999999999999988754
Q ss_pred ---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 590 ---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 590 ---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+-+.++||||+..+..+||+|++|.+|++++. |+.+..+.
T Consensus 474 ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~-G~~~~if~ 516 (534)
T COG4172 474 QKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQ-GPTEAVFA 516 (534)
T ss_pred HHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeee-CCHHHHhc
Confidence 45999999999999999999999999999974 76666554
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-71 Score=658.94 Aligned_cols=547 Identities=24% Similarity=0.401 Sum_probs=403.7
Q ss_pred cccccceeeccccccccCCC--ccchhhhhcchhhHHHHhHHHHHHhhhccCccccccccccccCCCCCCCCCCCcEEEE
Q 005532 24 PFASAKSFTNSLNFTKKQRP--RITCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLE 101 (692)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~ 101 (692)
.+++...|.....|+.++.| .+|..++..++..+|+.+ +..++..++........ .........++++
T Consensus 453 ~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~R----i~~fl~~~e~~~~~~~~------~~~~~~~~~i~i~ 522 (1381)
T KOG0054|consen 453 LLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKR----LKEFLLSEELDPDSVER------SPDEAGENAIEIK 522 (1381)
T ss_pred cccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhcCcccCcccccc------CCCCCCCceEEEe
Confidence 45566788888888888888 688899999999999999 77777665433211111 1111234569999
Q ss_pred eEEEEeCC---eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCCCCH
Q 005532 102 NISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (692)
Q Consensus 102 ~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv 178 (692)
|.+|+|+. .+.|+||||+|++|+.+||||+.|||||+||.+|+|+++..+|+|.++| .++||||.||+ ++.||
T Consensus 523 ~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---siaYv~Q~pWI-~ngTv 598 (1381)
T KOG0054|consen 523 NGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---SVAYVPQQPWI-QNGTV 598 (1381)
T ss_pred eeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---eEEEeccccHh-hCCcH
Confidence 99999965 3499999999999999999999999999999999999999999999875 59999999998 78999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccc
Q 005532 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (692)
Q Consensus 179 ~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (692)
+|||+.+ ..++. + +|..++.+|.++++++-+ . .|..++.+++ ..
T Consensus 599 reNILFG--~~~d~----~---------------------------rY~~Vi~aC~L~~Dle~L-p-~GD~TeIGEr-Gi 642 (1381)
T KOG0054|consen 599 RENILFG--SPYDE----E---------------------------RYDKVIKACALKKDLEIL-P-FGDLTEIGER-GI 642 (1381)
T ss_pred HHhhhcC--ccccH----H---------------------------HHHHHHHHccCHhHHhhc-C-CCCcceecCC-cc
Confidence 9999843 32221 2 333444455555555433 2 2444455555 89
Q ss_pred cCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHH-Hcc--CCCeEEEEecCHHHHHhhcCeEEEEecceEE
Q 005532 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 259 ~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~-L~~--~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~ 335 (692)
+|||||||||+||||+|+++||+|||+|+|++|+++..+|.+. ++. .++|+|+|||.++++.+ ||.|++|++|++
T Consensus 643 nLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I- 720 (1381)
T KOG0054|consen 643 NLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKI- 720 (1381)
T ss_pred CCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeE-
Confidence 9999999999999999999999999999999999999988763 322 37999999999999976 999999999997
Q ss_pred EeccChHHHHHHHH-----------------------------------------------------HHH-HH-------
Q 005532 336 TYEGNYSQYVLEKA-----------------------------------------------------AWI-ES------- 354 (692)
Q Consensus 336 ~~~G~y~~~~~~~~-----------------------------------------------------~~~-~~------- 354 (692)
...|+|++...... ... ..
T Consensus 721 ~~~Gty~el~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~ 800 (1381)
T KOG0054|consen 721 VESGTYEELLKSGGDFAELAHEEESEQEEEASEKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGK 800 (1381)
T ss_pred ecccCHHHHHhcchhHHHHhhccchhhccccccccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCE
Confidence 46677765442000 000 00
Q ss_pred --------------------------------------HHHHH----------------H--------------------
Q 005532 355 --------------------------------------QYAAW----------------E-------------------- 360 (692)
Q Consensus 355 --------------------------------------~~~~~----------------~-------------------- 360 (692)
+...| .
T Consensus 801 v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~~~~~~~WLs~W~~~~~~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~ 880 (1381)
T KOG0054|consen 801 VSWSVYKKYIKAAGGFLLVLLILLLFVLTQVLQIASNYWLSYWTDDGEDNGTTTVSTSFYLGVYALLGVASSLLTLLRSF 880 (1381)
T ss_pred eeHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 00000 0
Q ss_pred --------------------------------------------------------------------------------
Q 005532 361 -------------------------------------------------------------------------------- 360 (692)
Q Consensus 361 -------------------------------------------------------------------------------- 360 (692)
T Consensus 881 ~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~f 960 (1381)
T KOG0054|consen 881 LFAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWF 960 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHH
Confidence
Q ss_pred ------------------------------------------------------HHHHHHHHHHHHH-------------
Q 005532 361 ------------------------------------------------------KQQREIEQTKDLI------------- 373 (692)
Q Consensus 361 ------------------------------------------------------~~~~~~~~~~~~i------------- 373 (692)
++...++++...+
T Consensus 961 li~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a 1040 (1381)
T KOG0054|consen 961 LIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 0000011111111
Q ss_pred --------HHhc---------------cC-CcchhhhHH------------------------HHHHHHHHHHhhhcccc
Q 005532 374 --------NRLG---------------AG-ANSGRASSA------------------------EKKLERLQEEEQIEKPF 405 (692)
Q Consensus 374 --------~~l~---------------~~-~~~~~~~~~------------------------~~~l~rl~~~~~~~~~~ 405 (692)
+-+. .. .++|.++-+ ...+||+.++....++
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E- 1119 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSE- 1119 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCC-
Confidence 1110 01 123332111 1123677666543222
Q ss_pred cccceeeecCCCCCCCCceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEE
Q 005532 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (692)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~ 483 (692)
.+....-..|+..||.++-|+++|++.+|.. ..+|+||||+|++||+|||||++|||||||+.+|.++.+|.+|+|.+
T Consensus 1120 ~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~I 1199 (1381)
T KOG0054|consen 1120 APLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILI 1199 (1381)
T ss_pred CCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEE
Confidence 1111111116778999999999999999964 47999999999999999999999999999999999999999999999
Q ss_pred CCccce----------eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcc------cccccC----CC
Q 005532 484 GEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD------MLDRKV----SL 543 (692)
Q Consensus 484 ~~~~~~----------~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~~----~~ 543 (692)
||.++. ....+|++ .+ ++-|++.|+.-. ..+.++++++.|+.+++... .+|..+ .+
T Consensus 1200 DgvdI~~igL~dLRsrlsIIPQdP--vL-FsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N 1275 (1381)
T KOG0054|consen 1200 DGVDISKIGLHDLRSRLSIIPQDP--VL-FSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGEN 1275 (1381)
T ss_pred cCeecccccHHHHHhcCeeeCCCC--ce-ecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCcc
Confidence 998873 23455543 33 577888887643 34566778888888777421 133333 47
Q ss_pred CCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHh-cC-ceEEEEecCHHHHHhhccEEEEEECCEEEEe
Q 005532 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE-YK-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (692)
Q Consensus 544 LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~-~~-~tviivSHd~~~l~~~~d~i~~l~~g~l~~~ 621 (692)
+|-||||.|||||||+++++||+|||+|+++|+++...|++.|++ |+ .|||.|.|++..+.+ ||||+||++|++.+|
T Consensus 1276 ~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Ef 1354 (1381)
T KOG0054|consen 1276 FSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEF 1354 (1381)
T ss_pred CChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeec
Confidence 999999999999999999999999999999999999999999995 54 599999999999999 999999999999999
Q ss_pred cCChhHH
Q 005532 622 AGDYNYY 628 (692)
Q Consensus 622 ~g~~~~~ 628 (692)
+-++.-+
T Consensus 1355 dsP~~Ll 1361 (1381)
T KOG0054|consen 1355 DSPAELL 1361 (1381)
T ss_pred CChHHHH
Confidence 7766544
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-70 Score=597.51 Aligned_cols=433 Identities=25% Similarity=0.397 Sum_probs=356.1
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceE
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i 163 (692)
.+.++++|++|+||+.++|++|||+|.+||+++|+|.||||||||+|+|+|.++|++|+|.++|.. ..|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 457999999999999999999999999999999999999999999999999999999999999853 359
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+.++|++.+.+++||.|||+.+-... .....++...+.++..++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~-----------------------------------~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPT-----------------------------------RRFGLIDRKAMRRRARELL 130 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccc-----------------------------------cCCCccCHHHHHHHHHHHH
Confidence 99999999999999999996321100 0012355567788899999
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L---~~~~~tvI~vsHd~~~l~ 320 (692)
..+|+. ...+.++.+||+||||.|+|||||..+++||||||||++|+....+.|++++ ++.|.+||+|||.++++.
T Consensus 131 ~~lg~~-~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 131 ARLGLD-IDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHcCCC-CChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 999996 3478999999999999999999999999999999999999999999988765 568999999999999999
Q ss_pred hhcCeEEEEecceEEEeccCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHh
Q 005532 321 QLCTKIVETEMGVSRTYEGNY-SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~ 399 (692)
++||+|.+|++|+.. -.+.. .++- ..+.+..+.+ +. +
T Consensus 210 ~i~DritVlRDG~~v-~~~~~~~~~~-----------------------~~~lv~~MvG-----r~------~------- 247 (500)
T COG1129 210 EIADRITVLRDGRVV-GTRPTAAETS-----------------------EDELVRLMVG-----RE------L------- 247 (500)
T ss_pred HhcCEEEEEeCCEEe-eecccccCCC-----------------------HHHHHHHhhC-----cc------h-------
Confidence 999999999999863 11210 1100 0011111111 10 0
Q ss_pred hhcccccccceeeecC--CCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC
Q 005532 400 QIEKPFQRKQMKIRFP--ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (692)
Q Consensus 400 ~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~ 477 (692)
.. .+| .....+.++++++|++.. ..++|+||++++||++||.|-=|||+|-|+++|.|..++.
T Consensus 248 --~~---------~~~~~~~~~~~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~ 312 (500)
T COG1129 248 --ED---------LFPEPPEEGIGEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPAS 312 (500)
T ss_pred --hh---------hcccccccCCCCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCC
Confidence 00 011 111345678999998753 2589999999999999999999999999999999999999
Q ss_pred eeEEEECCccce-----------eeeecc-cchhhcCCCccHHHHHHHHhc-----c-c-c----HHHHHHHHhhcCCCc
Q 005532 478 GGEVLLGEHNVL-----------PNYFEQ-NQAEALDLDKTVLETVAEAAE-----D-W-R----IDDIKGLLGRCNFKA 534 (692)
Q Consensus 478 ~G~i~~~~~~~~-----------~~~~~q-~~~~~l~~~~tv~e~~~~~~~-----~-~-~----~~~~~~~L~~~~l~~ 534 (692)
+|+|.++|.++. ++|++. .....+...+++.+|+....- . + + ...+..+...+++..
T Consensus 313 ~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~ 392 (500)
T COG1129 313 SGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT 392 (500)
T ss_pred CceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCccc
Confidence 999999998663 235543 245678889999999865411 0 1 1 124677889999988
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEE
Q 005532 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (692)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~ 611 (692)
...+.++.+||||.||||.|||+|..+|+||||||||.|+|+.++..++++|+++ +.+||+||-|+.++..+||||+
T Consensus 393 ~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIl 472 (500)
T COG1129 393 PSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRIL 472 (500)
T ss_pred CCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEE
Confidence 8889999999999999999999999999999999999999999999999999976 4599999999999999999999
Q ss_pred EEECCEEEE
Q 005532 612 EVKGSNLQD 620 (692)
Q Consensus 612 ~l~~g~l~~ 620 (692)
+|.+|++..
T Consensus 473 Vm~~Gri~~ 481 (500)
T COG1129 473 VMREGRIVG 481 (500)
T ss_pred EEECCEEEE
Confidence 999999985
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-69 Score=673.88 Aligned_cols=486 Identities=20% Similarity=0.347 Sum_probs=339.0
Q ss_pred CcEEEEeEEEEeCC---eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCc-cEEEECCCCceEEEEcccCc
Q 005532 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSNMKIAFLSQEFE 171 (692)
Q Consensus 96 ~~l~i~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~-G~I~~~~~~~~i~~v~Q~~~ 171 (692)
+.|+++|++|+|++ +++|+|+||+|++|++++||||+|||||||+++|+|+++|++ |+|.+. ..|+||+|+||
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~---~~Iayv~Q~p~ 689 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIR---GTVAYVPQVSW 689 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEc---CeEEEEcCccc
Confidence 35999999999974 569999999999999999999999999999999999999999 999874 48999999999
Q ss_pred cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcc
Q 005532 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (692)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (692)
+ ++.||+|||..+-. .+ -+++.+.++. +.+...+..+ . -|+.+.
T Consensus 690 L-fngTIreNI~fg~~--~d----~e~y~~vl~a---------------------------~~L~~di~~L-P-~Gd~T~ 733 (1622)
T PLN03130 690 I-FNATVRDNILFGSP--FD----PERYERAIDV---------------------------TALQHDLDLL-P-GGDLTE 733 (1622)
T ss_pred c-CCCCHHHHHhCCCc--cc----HHHHHHHHHH---------------------------hCcHHHHHhC-C-Cccccc
Confidence 8 67899999974321 11 0222233332 2233333222 1 144434
Q ss_pred ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHH-HHcc--CCCeEEEEecCHHHHHhhcCeEEE
Q 005532 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGK--QDVPMVIISHDRAFLDQLCTKIVE 328 (692)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~-~L~~--~~~tvI~vsHd~~~l~~~~d~i~~ 328 (692)
.+++ ..+|||||||||+|||||+++|+|||||||||+||+++.+.+.+ .++. .++|+|+|||+++.+.. ||+|++
T Consensus 734 IGe~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~-aD~Ii~ 811 (1622)
T PLN03130 734 IGER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQ-VDRIIL 811 (1622)
T ss_pred ccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHh-CCEEEE
Confidence 4333 68899999999999999999999999999999999999887653 4443 47999999999998864 999999
Q ss_pred EecceEEEeccChHHHHHHHHH-------------------------------------------------------HHH
Q 005532 329 TEMGVSRTYEGNYSQYVLEKAA-------------------------------------------------------WIE 353 (692)
Q Consensus 329 l~~G~~~~~~G~y~~~~~~~~~-------------------------------------------------------~~~ 353 (692)
|++|++. ..|+|++....... ...
T Consensus 812 L~~G~i~-e~Gt~~eL~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (1622)
T PLN03130 812 VHEGMIK-EEGTYEELSNNGPLFQKLMENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIK 890 (1622)
T ss_pred EeCCEEE-EeCCHHHHHhcchhHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccchhhhh
Confidence 9999873 44555433210000 000
Q ss_pred HH--------HHHHHHHHHHH------------------------HHHHHHHH---------------------------
Q 005532 354 SQ--------YAAWEKQQREI------------------------EQTKDLIN--------------------------- 374 (692)
Q Consensus 354 ~~--------~~~~~~~~~~~------------------------~~~~~~i~--------------------------- 374 (692)
.. ...|.+..+.. -++..|.+
T Consensus 891 ~e~~~~g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~~~~~~i~~~l~~~~~i~~ 970 (1622)
T PLN03130 891 QEERETGVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGPLFYNLIYALLSFGQVLVT 970 (1622)
T ss_pred HHHHhcCccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHHHHHHH
Confidence 00 00000000000 00000000
Q ss_pred ------------------------Hh-cc------CCcchhh--------------------------------------
Q 005532 375 ------------------------RL-GA------GANSGRA-------------------------------------- 385 (692)
Q Consensus 375 ------------------------~l-~~------~~~~~~~-------------------------------------- 385 (692)
.+ .. ...+|+.
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~ 1050 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGI 1050 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0000000
Q ss_pred --------------------------hHHHHH------------------------------------------------
Q 005532 386 --------------------------SSAEKK------------------------------------------------ 391 (692)
Q Consensus 386 --------------------------~~~~~~------------------------------------------------ 391 (692)
....++
T Consensus 1051 ~~~~~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~ 1130 (1622)
T PLN03130 1051 VSTISLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTL 1130 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence 000000
Q ss_pred ---------------------------------------------------------------------------HHHHH
Q 005532 392 ---------------------------------------------------------------------------LERLQ 396 (692)
Q Consensus 392 ---------------------------------------------------------------------------l~rl~ 396 (692)
++|+.
T Consensus 1131 ~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~ 1210 (1622)
T PLN03130 1131 VNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVG 1210 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000
Q ss_pred HHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC
Q 005532 397 EEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~ 474 (692)
+.... +++......-..|+..|+....|+++||+++|++ .++|+|+||+|++||+|||||+||||||||+++|.|++
T Consensus 1211 e~~~~-~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~ 1289 (1622)
T PLN03130 1211 TYIDL-PSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV 1289 (1622)
T ss_pred HHhCC-CCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC
Confidence 00000 0000000000011223444557999999999964 37999999999999999999999999999999999999
Q ss_pred CCCeeEEEECCccce----------eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCc------cccc
Q 005532 475 KPRGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA------DMLD 538 (692)
Q Consensus 475 ~p~~G~i~~~~~~~~----------~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~------~~~~ 538 (692)
+|++|+|.+||.++. .++++|++ .+ ++.|+++|+.... ....+++.++++..++.+ ..++
T Consensus 1290 ~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp--~L-F~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~GLd 1365 (1622)
T PLN03130 1290 ELERGRILIDGCDISKFGLMDLRKVLGIIPQAP--VL-FSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSLGLD 1365 (1622)
T ss_pred CCCCceEEECCEecccCCHHHHHhccEEECCCC--cc-ccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCccccC
Confidence 999999999998763 35677653 34 4679999997643 345667777777776631 1122
Q ss_pred ----ccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEE
Q 005532 539 ----RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVE 612 (692)
Q Consensus 539 ----~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~ 612 (692)
.....||||||||+||||||+++|+||||||||++||.++.+.|++.|++. +.|+|+|+|+++.+.+ ||+|++
T Consensus 1366 t~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlV 1444 (1622)
T PLN03130 1366 AEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILV 1444 (1622)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEE
Confidence 234589999999999999999999999999999999999999999999865 3599999999999988 999999
Q ss_pred EECCEEEEecCChhHHHH
Q 005532 613 VKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 613 l~~g~l~~~~g~~~~~~~ 630 (692)
|++|+++++ |+.++.++
T Consensus 1445 Ld~G~IvE~-Gt~~eLl~ 1461 (1622)
T PLN03130 1445 LDAGRVVEF-DTPENLLS 1461 (1622)
T ss_pred EECCEEEEe-CCHHHHHh
Confidence 999999975 66666654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-69 Score=670.39 Aligned_cols=206 Identities=18% Similarity=0.355 Sum_probs=173.4
Q ss_pred CCCCceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------
Q 005532 419 RSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------- 489 (692)
Q Consensus 419 ~~~~~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------- 489 (692)
|+....|+++||+++|++ +++|+|+||+|++||++|||||||||||||+++|.|+++|++|+|.+||.++.
T Consensus 1229 ~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232 1229 WPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred CCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHH
Confidence 344456999999999953 47999999999999999999999999999999999999999999999998763
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCc----------ccccccCCCCCHHHHHHHHHHH
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.++++|++ .+ ++.|+++|+.... ....+++.+.++..++.+ ........+||||||||++|||
T Consensus 1309 R~~i~iVpQdp--~L-F~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLAR 1384 (1495)
T PLN03232 1309 RRVLSIIPQSP--VL-FSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLAR 1384 (1495)
T ss_pred HhhcEEECCCC--ee-eCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHH
Confidence 35677653 44 4579999997543 345667777777776632 1122334589999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||+++|+||||||||++||.++.+.+++.|++. +.|+|+|+|+++.+.+ ||+|++|++|+++++ |++++.++
T Consensus 1385 ALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~-Gt~~eLl~ 1458 (1495)
T PLN03232 1385 ALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEY-DSPQELLS 1458 (1495)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 999999999999999999999999999999865 3599999999999988 999999999999975 77777654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-68 Score=662.55 Aligned_cols=207 Identities=23% Similarity=0.426 Sum_probs=173.8
Q ss_pred CCCCCceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------
Q 005532 418 GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (692)
Q Consensus 418 ~~~~~~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------ 489 (692)
.|+....|+++||+++|++ .++|+|+||+|++||++||||++|||||||+++|.|+++|++|+|.+||.++.
T Consensus 1278 ~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~ 1357 (1522)
T TIGR00957 1278 GWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHD 1357 (1522)
T ss_pred CCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHH
Confidence 3455567999999999974 46999999999999999999999999999999999999999999999998763
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCc------ccccccC----CCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA------DMLDRKV----SLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~------~~~~~~~----~~LSgGqkqrv~LA 555 (692)
.++++|++ .+ ++.|+++|+.... ....+++.++|+.+++.+ +.++..+ ..||||||||+|||
T Consensus 1358 LR~~i~iVpQdp--~L-F~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1358 LRFKITIIPQDP--VL-FSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred HHhcCeEECCCC--cc-cCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHH
Confidence 35677653 34 4679999996432 345667777888777632 1233333 57999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc-C-ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~-~-~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||+++|+||||||||++||.++...|++.|++. . .|||+|+|+++.+.. ||+|++|++|+++++ |+.++.++
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE~-G~~~eLl~ 1508 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAEF-GAPSNLLQ 1508 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 9999999999999999999999999999999864 3 599999999999988 999999999999976 77666554
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=553.42 Aligned_cols=437 Identities=25% Similarity=0.389 Sum_probs=358.6
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~ 164 (692)
..+++++++|.|++..++++|||+|++||++||+|+||+|||||+++|.|+++|++|+|.++|.. ..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 46999999999999999999999999999999999999999999999999999999999999853 3599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
+|+|+|.+.++.||.|||..+.... ....++.....+++.++.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~------------------------------------~~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPS------------------------------------KGGLIDRRQARARIKELSE 126 (501)
T ss_pred EEeeccccccccchhhhhhhcCccc------------------------------------cccccCHHHHHHHHHHHHH
Confidence 9999999999999999997443210 0011334456788899999
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L---~~~~~tvI~vsHd~~~l~~ 321 (692)
.+||+ -+.+.++.+||-|+||||.|-+|||.+|++|||||||+.|-|...+.|+..| ++.|+|||+|||.+.++.+
T Consensus 127 ~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99997 6789999999999999999999999999999999999999999999998776 4689999999999999999
Q ss_pred hcCeEEEEecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhh
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~ 401 (692)
+||++.+|+.|+.. |.++.. ... . ..++.+.+.+ + .+
T Consensus 206 iaDrvTVLR~Gkvv---gt~~~~-~~~-------------t------~~ela~lMvG-----~---------------~v 242 (501)
T COG3845 206 IADRVTVLRRGKVV---GTVDPV-AET-------------T------EEELAELMVG-----R---------------EV 242 (501)
T ss_pred hhCeeEEEeCCeEE---eeecCC-CCC-------------C------HHHHHHHhcC-----C---------------cc
Confidence 99999999999863 333210 000 0 0001111111 0 00
Q ss_pred cccccccceeeecCCCCCCCCceEEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeE
Q 005532 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (692)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~ 480 (692)
..+. .. .+..+++++|++++++..-.. ...+++|||+|..||++||.|-.|.|.+.|+.+|+|+.+|.+|+
T Consensus 243 ~~~~-------~~-~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~ 314 (501)
T COG3845 243 VLRV-------VK-PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 (501)
T ss_pred cccc-------cc-CCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce
Confidence 0000 01 123466889999999987543 36799999999999999999999999999999999999999999
Q ss_pred EEECCccc----e--------eeeeccc-chhhcCCCccHHHHHHHHhcc-----------cc--HHHHHHHHhhcCCCc
Q 005532 481 VLLGEHNV----L--------PNYFEQN-QAEALDLDKTVLETVAEAAED-----------WR--IDDIKGLLGRCNFKA 534 (692)
Q Consensus 481 i~~~~~~~----~--------~~~~~q~-~~~~l~~~~tv~e~~~~~~~~-----------~~--~~~~~~~L~~~~l~~ 534 (692)
|.++|.++ . .+|++.+ ....+.+++|+.+|+...... |. ...+.++++.|++..
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 99999876 1 2344433 245677899999998754321 11 134778899999987
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEE
Q 005532 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVV 611 (692)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~ 611 (692)
.....++.+||||++||+-+||-|.++|+|||..+||.|||..+.+.+.+.|.+. +.+|++||-|++++..+||||.
T Consensus 395 ~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIa 474 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIA 474 (501)
T ss_pred CCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheee
Confidence 7778889999999999999999999999999999999999999999999988754 4599999999999999999999
Q ss_pred EEECCEEEE
Q 005532 612 EVKGSNLQD 620 (692)
Q Consensus 612 ~l~~g~l~~ 620 (692)
+|.+|++..
T Consensus 475 Vi~~Gri~~ 483 (501)
T COG3845 475 VIYEGRIVG 483 (501)
T ss_pred eeeCCceec
Confidence 999999973
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-65 Score=629.20 Aligned_cols=203 Identities=25% Similarity=0.420 Sum_probs=172.3
Q ss_pred eEEEEeEEEEcCC---eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC------------------------
Q 005532 424 VVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP------------------------ 476 (692)
Q Consensus 424 ~l~~~~l~~~y~~---~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p------------------------ 476 (692)
-|+++||+|+|++ .++|+|+||+|++|+++||||+||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 5999999999973 4799999999999999999999999999999999999998
Q ss_pred ------------------------------CeeEEEECCccce----------eeeecccchhhcCCCccHHHHHHHHhc
Q 005532 477 ------------------------------RGGEVLLGEHNVL----------PNYFEQNQAEALDLDKTVLETVAEAAE 516 (692)
Q Consensus 477 ------------------------------~~G~i~~~~~~~~----------~~~~~q~~~~~l~~~~tv~e~~~~~~~ 516 (692)
++|+|.++|.++. .+|++|++ .+ ++.|++||+.....
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep--~L-F~gTIreNI~~g~~ 1321 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEP--ML-FNMSIYENIKFGKE 1321 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCC--cc-ccccHHHHHhcCCC
Confidence 6999999998763 45777753 34 58999999998755
Q ss_pred cccHHHHHHHHhhcCCCc------ccccc----cCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 005532 517 DWRIDDIKGLLGRCNFKA------DMLDR----KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586 (692)
Q Consensus 517 ~~~~~~~~~~L~~~~l~~------~~~~~----~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l 586 (692)
....+++..+++..++.. +..+. ....||||||||++|||||+++|+||||||||++||.++.+.+++.|
T Consensus 1322 ~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L 1401 (1466)
T PTZ00265 1322 DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI 1401 (1466)
T ss_pred CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence 556667777777666521 11233 34579999999999999999999999999999999999999999999
Q ss_pred Hhc----CceEEEEecCHHHHHhhccEEEEEEC----CEEEEecCChhHHHH
Q 005532 587 SEY----KGTVITVSHDRYFVKQIVNRVVEVKG----SNLQDYAGDYNYYLE 630 (692)
Q Consensus 587 ~~~----~~tviivSHd~~~l~~~~d~i~~l~~----g~l~~~~g~~~~~~~ 630 (692)
.+. +.|+|+|||++..+.. ||+|++|++ |+++...|++++.+.
T Consensus 1402 ~~~~~~~~~TvIiIaHRlsti~~-aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1402 VDIKDKADKTIITIAHRIASIKR-SDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HHHhccCCCEEEEEechHHHHHh-CCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 876 4599999999999976 999999999 887655798887754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-64 Score=624.56 Aligned_cols=206 Identities=22% Similarity=0.395 Sum_probs=173.1
Q ss_pred CCCCCceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------
Q 005532 418 GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------ 489 (692)
Q Consensus 418 ~~~~~~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------ 489 (692)
.|+....|+++||+++|++ +++|+|+||+|++||+|||||+||||||||+++|+|+++ .+|+|.+||.++.
T Consensus 1211 ~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~ 1289 (1490)
T TIGR01271 1211 CWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQT 1289 (1490)
T ss_pred CCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHH
Confidence 3555667999999999964 679999999999999999999999999999999999997 7999999998763
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCc------ccccccC----CCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA------DMLDRKV----SLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~------~~~~~~~----~~LSgGqkqrv~LA 555 (692)
..+++|++ .+ ++.|+++|+... .....+++..+|+.+++.. ..++..+ ..||||||||+|||
T Consensus 1290 lR~~is~IpQdp--~L-F~GTIR~NLdp~-~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LA 1365 (1490)
T TIGR01271 1290 WRKAFGVIPQKV--FI-FSGTFRKNLDPY-EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLA 1365 (1490)
T ss_pred HHhceEEEeCCC--cc-CccCHHHHhCcc-cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHH
Confidence 35667653 44 467999999643 2345677888888887732 1123333 37999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||+++|+||||||||++||.++...|++.|++. +.|||+|||+++.+.. ||+|++|++|+++++ |++.+.++
T Consensus 1366 RALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-~DrIlvL~~G~ivE~-g~p~~Ll~ 1440 (1490)
T TIGR01271 1366 RSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLE-CQQFLVIEGSSVKQY-DSIQKLLN 1440 (1490)
T ss_pred HHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEEe-CCHHHHHc
Confidence 9999999999999999999999999999999865 3599999999999987 999999999999986 66666654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-64 Score=626.21 Aligned_cols=202 Identities=21% Similarity=0.335 Sum_probs=171.8
Q ss_pred ceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------e
Q 005532 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (692)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~ 490 (692)
..|+++||+++|++ .++|+|+||+|++||+|||||++|||||||+++|+|+++|++|+|.+||.++. +
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46999999999964 35999999999999999999999999999999999999999999999998763 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcc------ccccc----CCCCCHHHHHHHHHHHHhcc
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD------MLDRK----VSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~------~~~~~----~~~LSgGqkqrv~LAral~~ 560 (692)
++++|++ .+ ++.|+++|+... .....+++..+++.+++... .++.. ..+||||||||++|||||++
T Consensus 1387 ~iVpQdp--~L-F~gTIreNIdp~-~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~ 1462 (1560)
T PTZ00243 1387 SMIPQDP--VL-FDGTVRQNVDPF-LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLK 1462 (1560)
T ss_pred eEECCCC--cc-ccccHHHHhCcc-cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhc
Confidence 5677653 34 467999999653 24456778888888887421 12333 35799999999999999999
Q ss_pred C-CcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 561 P-STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 561 ~-p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+ |+||||||||++||.++.+.+++.|++. +.|||+|+|+++.+.. ||+|++|++|++.++ |++++.+.
T Consensus 1463 ~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVLd~G~VvE~-Gt~~eLl~ 1533 (1560)
T PTZ00243 1463 KGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQ-YDKIIVMDHGAVAEM-GSPRELVM 1533 (1560)
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHh-CCEEEEEECCEEEEE-CCHHHHHh
Confidence 5 8999999999999999999999999864 3599999999999987 999999999999975 77777654
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-61 Score=597.32 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=175.1
Q ss_pred ceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------ee
Q 005532 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~ 491 (692)
.+|+++||++.|++ +.+++++||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.++. .+
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IG 2015 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMG 2015 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEE
Confidence 47999999999985 57999999999999999999999999999999999999999999999987652 46
Q ss_pred eecccchhhcCCCccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
|.+|. ..+.+.+|+.|++....... . ...+.++|+.+++. +..++++.+|||||||||+||+||+.+|+||
T Consensus 2016 y~pQ~--~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VL 2092 (2272)
T TIGR01257 2016 YCPQF--DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092 (2272)
T ss_pred EEecc--ccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 77765 35667899999987542211 1 22466789999995 5689999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||||||+|||+.+++.+.+.|.+. +.|||++||++++++.+||||++|++|++.. .|+..+.
T Consensus 2093 LLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~-~Gs~q~L 2157 (2272)
T TIGR01257 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQC-LGTIQHL 2157 (2272)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHH
Confidence 999999999999999999998765 4599999999999999999999999999974 4665544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-58 Score=568.62 Aligned_cols=197 Identities=22% Similarity=0.318 Sum_probs=166.3
Q ss_pred eEEEEeEEEEcC----CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCeeEEEECCccce------e
Q 005532 424 VVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVL------P 490 (692)
Q Consensus 424 ~l~~~~l~~~y~----~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~---p~~G~i~~~~~~~~------~ 490 (692)
+++++||++.|+ ++.+|+|||++|++|+++||+|||||||||||++|+|+.+ |++|+|.++|.++. .
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i 838 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSI 838 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcce
Confidence 589999999995 4579999999999999999999999999999999999997 78999999997652 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhc-----ccc----HHHHHHHHhhcCCCcccccccCC----CCCHHHHHHHHHHHH
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVS----LLSGGEKARLAFCKF 557 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~----~LSgGqkqrv~LAra 557 (692)
+|+.|+. .+.+..||.|++..... ... .+.+.++++.+++. +..++.++ .|||||||||+||++
T Consensus 839 ~yv~Q~~--~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~a 915 (1394)
T TIGR00956 839 GYVQQQD--LHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVE 915 (1394)
T ss_pred eeecccc--cCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHH
Confidence 5777652 35678999999986432 111 23477899999995 56677776 799999999999999
Q ss_pred hccCCc-EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHH-HHhhccEEEEEECC-EEEEecCC
Q 005532 558 MVKPST-LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYF-VKQIVNRVVEVKGS-NLQDYAGD 624 (692)
Q Consensus 558 l~~~p~-lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~-l~~~~d~i~~l~~g-~l~~~~g~ 624 (692)
|+.+|+ ||||||||+|||..+...+.+.|++. +.|||+++|++.. +.+.||++++|++| +++ |.|+
T Consensus 916 L~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv-~~G~ 987 (1394)
T TIGR00956 916 LVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV-YFGD 987 (1394)
T ss_pred HHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE-EECC
Confidence 999997 99999999999999999999999865 4599999999986 45679999999987 776 4454
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-56 Score=545.97 Aligned_cols=197 Identities=20% Similarity=0.317 Sum_probs=163.9
Q ss_pred eEEEEeEEEEcC-------------CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CeeEEEECCccc
Q 005532 424 VVTIKNLEFGYE-------------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNV 488 (692)
Q Consensus 424 ~l~~~~l~~~y~-------------~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p--~~G~i~~~~~~~ 488 (692)
.+.++||++.++ .+.+|+|+|++|++|+++||+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 488999998863 23699999999999999999999999999999999999763 789999998654
Q ss_pred e-------eeeecccchhhcCCCccHHHHHHHHhc-----ccc----HHHHHHHHhhcCCCcccccccC-----CCCCHH
Q 005532 489 L-------PNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKV-----SLLSGG 547 (692)
Q Consensus 489 ~-------~~~~~q~~~~~l~~~~tv~e~~~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~-----~~LSgG 547 (692)
. .+|+.|+. .+.+..||.|++..... ... ...+.++++.+++. +..++.+ ..||||
T Consensus 947 ~~~~~~~~igyv~Q~d--~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~-~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 KQETFARISGYCEQND--IHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELD-NLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ChHHhhhheEEEcccc--ccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCCh-hHhCCccCCCCCCCcCHH
Confidence 2 36777753 45678999999976431 111 12477899999995 4566665 589999
Q ss_pred HHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHH-HHHhhccEEEEEEC-CEEEEec
Q 005532 548 EKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRY-FVKQIVNRVVEVKG-SNLQDYA 622 (692)
Q Consensus 548 qkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~-~l~~~~d~i~~l~~-g~l~~~~ 622 (692)
|||||+||++|+.+|+||+|||||+|||..+...+.+.|++. +.|||+++|+.. .+..+||++++|++ |+++ |.
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v-~~ 1102 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVI-YS 1102 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEE-EE
Confidence 999999999999999999999999999999999999999875 469999999998 46788999999996 7776 55
Q ss_pred CC
Q 005532 623 GD 624 (692)
Q Consensus 623 g~ 624 (692)
|+
T Consensus 1103 G~ 1104 (1470)
T PLN03140 1103 GP 1104 (1470)
T ss_pred CC
Confidence 54
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=421.14 Aligned_cols=434 Identities=26% Similarity=0.419 Sum_probs=283.5
Q ss_pred eEEEEeCCe-eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCCCCHHH
Q 005532 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (692)
Q Consensus 102 ~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv~e 180 (692)
++..+|+.. ..|-.+- ...+|.++||+|+||-||||-+++|+|++.|.=|...- +.. + ++..-.+..|=.+
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~--pp~---w--deVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYED--PPS---W--DEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCC--CCC---H--HHHHHHhhhhHHH
Confidence 456778643 1222221 45689999999999999999999999999998775210 000 0 0000001111111
Q ss_pred HHHhhh-HHHHHHHHH---HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccc
Q 005532 181 EFMSAF-KEEMEIAGK---LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (692)
Q Consensus 181 ~i~~~~-~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (692)
|.+... ........+ .+.+-..+.. .+.+++...+ -.-..+++.+.+++. ..++|.
T Consensus 151 ~YF~~l~~g~~r~v~K~QYVd~iPk~~KG------~v~elLk~~d-------------e~g~~devve~l~L~-nvl~r~ 210 (591)
T COG1245 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKG------KVGELLKKVD-------------ERGKFDEVVERLGLE-NVLDRD 210 (591)
T ss_pred HHHHHHHcCCcceecchHHHHHHHHHhcc------hHHHHHHhhh-------------hcCcHHHHHHHhcch-hhhhhh
Confidence 111000 000000000 0000011100 1111221111 012466788889996 688999
Q ss_pred cccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhcCeEEEEecce
Q 005532 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (692)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L---~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~ 333 (692)
+.+|||||.||+|||.++++++|++++|||||.||...+-...+.+ .+.+++||+|.||+..++.++|.|.++ -|+
T Consensus 211 v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~-YG~ 289 (591)
T COG1245 211 VSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHIL-YGE 289 (591)
T ss_pred hhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEE-ecC
Confidence 9999999999999999999999999999999999998765544433 334899999999999999999988776 333
Q ss_pred EE---EeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhhhcccccccce
Q 005532 334 SR---TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQM 410 (692)
Q Consensus 334 ~~---~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~l~rl~~~~~~~~~~~~~~~ 410 (692)
.. .+.-.|+. +.-|+.+-.+ .. .++ .-.+...+.
T Consensus 290 pg~YGvvs~p~sv--------------------------r~gIN~yL~G----yl----------~~E---N~R~R~~~I 326 (591)
T COG1245 290 PGVYGVVSKPKSV--------------------------RVGINEYLKG----YL----------PEE---NVRFRPEEI 326 (591)
T ss_pred CccceEeccchHH--------------------------HHHHHHHHhc----cC----------chh---cccccccce
Confidence 22 22222210 0011110000 00 000 000111122
Q ss_pred eeecCC-CCCCC-CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc
Q 005532 411 KIRFPE-RGRSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (692)
Q Consensus 411 ~~~~~~-~~~~~-~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~ 488 (692)
.|...+ ..... ..+++..++++.||+- -|+--.=+|..||++|++||||-|||||.++|+|.++|++|. ..++
T Consensus 327 ~F~~~~~~~~~~~~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~ 401 (591)
T COG1245 327 EFEEKPPRDDKARDTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL 401 (591)
T ss_pred eeeccCcccccccceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc
Confidence 222211 11222 5567777888888742 233333456678999999999999999999999999999998 2345
Q ss_pred eeeeecccchhhcCCCccHHHHHHHHhcc-cc-HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 489 ~~~~~~q~~~~~l~~~~tv~e~~~~~~~~-~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
+..|-+|...+ +.+.||.+.+...... +. .....+++.-+++ ...+++++..|||||.|||++|.+|.+++||.|
T Consensus 402 ~vSyKPQyI~~--~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l-~~i~e~~v~~LSGGELQRvaIaa~L~reADlYl 478 (591)
T COG1245 402 KVSYKPQYISP--DYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNL-EDLLERPVDELSGGELQRVAIAAALSREADLYL 478 (591)
T ss_pred eEeecceeecC--CCCCcHHHHHHHhhhhhcccchhHHhhcCccch-HHHHhcccccCCchhHHHHHHHHHhccccCEEE
Confidence 55666654432 3578998888765432 22 1224567778888 467899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEEC
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG 615 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~ 615 (692)
||||++|||.+.+-.+...|+++ ..|.++|-||+.+++-++||++++++
T Consensus 479 lDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 479 LDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred ecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEec
Confidence 99999999999999888888865 46999999999999999999999974
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=394.78 Aligned_cols=209 Identities=29% Similarity=0.491 Sum_probs=183.6
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (692)
+|+++|++|+||+..+|++|||+|++||+++||||+|||||||||||+|+.+|++|+|.++|.. .++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 5999999999999999999999999999999999999999999999999999999999999842 26999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
|+|++++|+++||.||++.+.-. ....+..+.++++.++|+.
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~--------------------------------------v~~~~k~eA~~~A~~lL~~ 123 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVK--------------------------------------VKKLSKAEAREKALELLEK 123 (240)
T ss_pred ecccccccccchHHHHHHhhhHH--------------------------------------HcCCCHHHHHHHHHHHHHH
Confidence 99999999999999999743210 0112334556778899999
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHH---HccCCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~---L~~~~~tvI~vsHd~~~l~~~ 322 (692)
+|+. +..+.+|.+|||||||||||||||+.+|+++|+|||||+|||+.+..+.+. |.+.|.|+|+|||++.|+.++
T Consensus 124 VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V 202 (240)
T COG1126 124 VGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV 202 (240)
T ss_pred cCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence 9997 678999999999999999999999999999999999999999999888765 456899999999999999999
Q ss_pred cCeEEEEecceEEEeccChHHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
+|||+.+++|++. -.|...+++
T Consensus 203 adrviFmd~G~ii-e~g~p~~~f 224 (240)
T COG1126 203 ADRVIFMDQGKII-EEGPPEEFF 224 (240)
T ss_pred hheEEEeeCCEEE-EecCHHHHh
Confidence 9999999999874 445655544
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=436.03 Aligned_cols=222 Identities=39% Similarity=0.652 Sum_probs=195.0
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhcC
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~ 502 (692)
.+|+++|+++.|+++++|+++||+|.+|++|||||+|||||||||++|+|...|++|+|.+.+ .+..+|+.|+. .++
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-~~~v~~l~Q~~--~~~ 78 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-GLRVGYLSQEP--PLD 78 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-CceEEEeCCCC--CcC
Confidence 469999999999999999999999999999999999999999999999999999999999974 46788998864 345
Q ss_pred CCccHHHHHHHHhc-----------------------------------ccc-HHHHHHHHhhcCCCcccccccCCCCCH
Q 005532 503 LDKTVLETVAEAAE-----------------------------------DWR-IDDIKGLLGRCNFKADMLDRKVSLLSG 546 (692)
Q Consensus 503 ~~~tv~e~~~~~~~-----------------------------------~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (692)
...|+.+.+..... .|. ..++..+|..+|++.. ++++++|||
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~~~~~LSG 156 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DRPVSSLSG 156 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cCchhhcCH
Confidence 56688776654211 122 1356788999999654 899999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChh
Q 005532 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (692)
Q Consensus 547 Gqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~ 626 (692)
|||.||+||+||+.+||||||||||||||.+++.||+++|.+|.+|||+||||++|++++|++|+.++.|++..|.|||+
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCceeEecCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHh
Q 005532 627 YYLEKNLDAREKELEREAELEER 649 (692)
Q Consensus 627 ~~~~~~~~~~~~~~~~~~~~~~~ 649 (692)
.|.++++++.+++.+.+++++++
T Consensus 237 ~~~~~r~~~~~~~~~~~~~~~~~ 259 (530)
T COG0488 237 SYLEQKAERLRQEAAAYEKQQKE 259 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998776665555554443
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-48 Score=376.81 Aligned_cols=205 Identities=28% Similarity=0.444 Sum_probs=181.5
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
++|+++||+++||+..+|++||++|.+||+++||||+|||||||||+|.|+.+|++|+|.++|.++. .+
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 3699999999999999999999999999999999999999999999999999999999999996442 35
Q ss_pred eecccchhhcCCCccHHHHHHHHhc---cc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
.++|+ .+++|.+||.+|+..+.- .+ ..+.+.++|+++|+. +..+.+|.+|||||||||||||||+.+|++
T Consensus 81 mVFQ~--fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~v 157 (240)
T COG1126 81 MVFQQ--FNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKV 157 (240)
T ss_pred eeccc--ccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCE
Confidence 66664 579999999999987632 11 234578899999995 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~~ 631 (692)
+|+|||||+|||+....+.+.+++. +.|+|+|||++.|+.+++|||++|++|++++. |+.+++...
T Consensus 158 mLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~-g~p~~~f~~ 226 (240)
T COG1126 158 MLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEE-GPPEEFFDN 226 (240)
T ss_pred EeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEe-cCHHHHhcC
Confidence 9999999999999999999988865 45999999999999999999999999998865 466666653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=385.55 Aligned_cols=196 Identities=30% Similarity=0.429 Sum_probs=174.1
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCC-----CceEEEEcccCc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-----NMKIAFLSQEFE 171 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~-----~~~i~~v~Q~~~ 171 (692)
.+.++++++.|++.++|+|+||+|.+||+++||||+|||||||||+|+|+.+|++|+|.++|. ...++||+|++.
T Consensus 3 ~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 3 LLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA 82 (248)
T ss_pred eEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc
Confidence 589999999999999999999999999999999999999999999999999999999999875 347999999999
Q ss_pred cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcc
Q 005532 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (692)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (692)
+++..||.+|+..+.... .....+..+++.++|+.+|+. .
T Consensus 83 LlPW~Tv~~NV~l~l~~~---------------------------------------~~~~~e~~~~a~~~L~~VgL~-~ 122 (248)
T COG1116 83 LLPWLTVLDNVALGLELR---------------------------------------GKSKAEARERAKELLELVGLA-G 122 (248)
T ss_pred ccchhhHHhhheehhhcc---------------------------------------ccchHhHHHHHHHHHHHcCCc-c
Confidence 999999999996432110 012223345788899999997 6
Q ss_pred ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCeEE
Q 005532 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIV 327 (692)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~~~d~i~ 327 (692)
..+++|.+|||||||||+|||||+.+|+||||||||++||+.|+..+.+.| ++.++|||+||||++++-.++|||+
T Consensus 123 ~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRiv 202 (248)
T COG1116 123 FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVV 202 (248)
T ss_pred hhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEE
Confidence 789999999999999999999999999999999999999999998877654 5678999999999999999999999
Q ss_pred EEecc
Q 005532 328 ETEMG 332 (692)
Q Consensus 328 ~l~~G 332 (692)
+|.++
T Consensus 203 vl~~~ 207 (248)
T COG1116 203 VLSNR 207 (248)
T ss_pred EecCC
Confidence 99884
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=382.14 Aligned_cols=204 Identities=27% Similarity=0.432 Sum_probs=183.4
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc----------eEEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~----------~i~~v 166 (692)
+|+++||||.|+++.+++|+||+|++||++++|||+||||||+||+|.++++|++|+|.++|.+. +||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998643 69999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
-|...+++++||.|||..... ....+....++++.++|+.+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~---------------------------------------L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPK---------------------------------------LLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhcccCCCccHHHHHHhhhh---------------------------------------hcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999963210 01123345678899999999
Q ss_pred CCCc-cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 005532 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~ 321 (692)
|+++ ++.+|+|.+|||||+|||.+||||+.+|+|||+||||++|||.++..|.+.+ ++.++|||+||||++++.+
T Consensus 122 gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9986 5899999999999999999999999999999999999999999999998765 3579999999999999999
Q ss_pred hcCeEEEEecceEEEecc
Q 005532 322 LCTKIVETEMGVSRTYEG 339 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G 339 (692)
++|||++|+.|++..|.-
T Consensus 202 Ladri~vm~~G~i~Q~~~ 219 (309)
T COG1125 202 LADRIAVMDAGEIVQYDT 219 (309)
T ss_pred hhceEEEecCCeEEEeCC
Confidence 999999999999976643
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-47 Score=383.05 Aligned_cols=206 Identities=33% Similarity=0.541 Sum_probs=182.6
Q ss_pred cEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
+|++++|+|.|+. .++|+||||+|++||++||||.+|+|||||+|+|.++..|++|+|.++|.+
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 4899999999976 359999999999999999999999999999999999999999999999843
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
.+||+++|++.++...||++|+...+. ....+..+.+++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe---------------------------------------iag~~k~ei~~R 121 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE---------------------------------------LAGVPKAEIKQR 121 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh---------------------------------------hcCCCHHHHHHH
Confidence 369999999999999999999964321 011334466789
Q ss_pred HHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsH 314 (692)
+.++|+.+|++ +..+++|.+|||||||||+|||||+.+|+|||.|||||+|||++.+.+.++|+ +.|.||++|||
T Consensus 122 V~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 122 VAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999998 78899999999999999999999999999999999999999999998888874 47999999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.++.+.++|||+++|++|++. -.|...+
T Consensus 201 Em~Vvk~ic~rVavm~~G~lv-E~G~v~~ 228 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGRLV-EEGTVSE 228 (339)
T ss_pred hHHHHHHHhhhheEeeCCEEE-EeccHHH
Confidence 999999999999999999984 4555433
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=369.15 Aligned_cols=212 Identities=24% Similarity=0.396 Sum_probs=184.2
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc-------------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~------------- 161 (692)
.+.|++++++++||++.|++||||+|++||+++|+||+|||||||||+|.|+++|++|+|.+.|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5679999999999999999999999999999999999999999999999999999999999998642
Q ss_pred eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
++|+++|.-.+|.++||+||+...+.+. ..++...+++.+..
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~--------------------------------------~~lp~~~i~~lv~~ 127 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREH--------------------------------------TKLPESLIRELVLM 127 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhh--------------------------------------ccCCHHHHHHHHHH
Confidence 5999999999999999999996433211 11223334455556
Q ss_pred HhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~ 317 (692)
-|+.+|+.....+..|++|||||++|++||||++.+|+||++||||+||||.+...+.++++ +.+.|+|+||||++
T Consensus 128 KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 68889998776899999999999999999999999999999999999999998777665543 46999999999999
Q ss_pred HHHhhcCeEEEEecceEEEeccChHHHH
Q 005532 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
.+..+||+|+++.+|++ .+.|.+.+..
T Consensus 208 s~~~i~Drv~~L~~gkv-~~~Gt~~el~ 234 (263)
T COG1127 208 SLLTIADRVAVLADGKV-IAEGTPEELL 234 (263)
T ss_pred HHHhhhceEEEEeCCEE-EEeCCHHHHH
Confidence 99999999999999998 6889876543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-46 Score=376.80 Aligned_cols=212 Identities=27% Similarity=0.431 Sum_probs=176.6
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------ceEEEEc
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLS 167 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------~~i~~v~ 167 (692)
++.|+++|+++.|++.++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.+.|.+ .+|||||
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 346999999999997689999999999999999999999999999999999999999999988752 4799999
Q ss_pred ccCcc--CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 168 QEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 168 Q~~~~--~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
|...+ .+..||+|.+.++-...... +......+ .+.+.++|+.
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~----------------------------------~~~~~~~d-~~~v~~aL~~ 126 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGW----------------------------------FRRLNKKD-KEKVDEALER 126 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccc----------------------------------cccccHHH-HHHHHHHHHH
Confidence 96533 35679999886432111000 00011111 4678899999
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~ 322 (692)
+|+. +..++++.+|||||+|||.|||||+++|++|||||||+|+|+.++..+.++|+ +.|+|||+||||+..+..+
T Consensus 127 Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 127 VGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred cCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 9997 78999999999999999999999999999999999999999999999888764 4599999999999999999
Q ss_pred cCeEEEEecceEEEeccChHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+|+.|+... .+.|+..++
T Consensus 206 ~D~vi~Ln~~~--~~~G~~~~~ 225 (254)
T COG1121 206 FDRVICLNRHL--IASGPPEEV 225 (254)
T ss_pred CCEEEEEcCee--EeccChhhc
Confidence 99999997665 456766444
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-46 Score=377.85 Aligned_cols=209 Identities=27% Similarity=0.419 Sum_probs=177.5
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc----------eEEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~----------~i~~v 166 (692)
.++++|++++|+++++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|.+. .+||+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 48999999999999999999999999999999999999999999999999999999999998642 69999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
||.+...+..||+|.+..+-.+-. . + +. ....+-.+.+.+.|+.+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~--------------------~-------------~-~~-~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHL--------------------G-------------L-FG-RPSKEDEEIVEEALELL 126 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCccc--------------------c-------------c-cc-CCCHhHHHHHHHHHHHh
Confidence 999888788999998853210000 0 0 00 00111123577789999
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~ 322 (692)
|+. +..+|++.+|||||||||.|||||+++|+||||||||++||....-.+.++++ +.|.|||+|+||++++.++
T Consensus 127 ~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 996 68899999999999999999999999999999999999999999888887764 4689999999999999999
Q ss_pred cCeEEEEecceEEEeccChH
Q 005532 323 CTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~ 342 (692)
||+++.|++|++ ...|...
T Consensus 206 ad~~i~lk~G~i-~a~G~p~ 224 (258)
T COG1120 206 ADHLILLKDGKI-VAQGTPE 224 (258)
T ss_pred CCEEEEEECCeE-EeecCcc
Confidence 999999999998 4566643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=364.58 Aligned_cols=197 Identities=28% Similarity=0.473 Sum_probs=169.0
Q ss_pred EEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------
Q 005532 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (692)
Q Consensus 98 l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------- 160 (692)
++++|+++.|+. ..+|+++||+|++||+++|+||+||||||||++|.|+..|++|.|.++|.+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 679999999964 369999999999999999999999999999999999999999999998732
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..||||+|++.+.+++||.||+..... +. .........++
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~---------------~~------------------------~~~~~~~~~~~ 122 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLL---------------IA------------------------GKSAGRRKRAA 122 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHH---------------Hc------------------------CCChhHHHHHH
Confidence 259999999999999999999963210 00 00011234567
Q ss_pred HHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecC
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd 315 (692)
..+++.+|+.+...+++|.+|||||||||||||||+.+|+|||.||||.+||.++.+.+.++|+ +.|+||||||||
T Consensus 123 ~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 123 EELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred HHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 7888999997555558899999999999999999999999999999999999999999988774 358899999999
Q ss_pred HHHHHhhcCeEEEEecceE
Q 005532 316 RAFLDQLCTKIVETEMGVS 334 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~ 334 (692)
...+. .|||++.+.+|++
T Consensus 203 ~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 203 PELAK-YADRVIELKDGKI 220 (226)
T ss_pred HHHHH-hCCEEEEEeCCee
Confidence 98886 7999999999984
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-45 Score=362.35 Aligned_cols=199 Identities=28% Similarity=0.503 Sum_probs=175.3
Q ss_pred CcEEEEeEEEEeCCee----ceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCC-----------C
Q 005532 96 SGVKLENISKSYKGVT----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-----------N 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~----vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~-----------~ 160 (692)
++|+++|+++.|+... ++++|||+|.+||++||||++|||||||+++|+|+.+|++|+|.++|. .
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4699999999998876 999999999999999999999999999999999999999999999984 2
Q ss_pred ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 ~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|-+|+|+|. +.+..||.+-|...+. .......+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~-----------------------------------------~~~~~~~~~~ 120 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLR-----------------------------------------PHGLSKSQQR 120 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhc-----------------------------------------cCCccHHHHH
Confidence 35999999984 5566788876642211 0112234456
Q ss_pred HHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEec
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsH 314 (692)
+.++|+.+|+++..++|.+.+|||||+|||||||||..+|++||||||||+||+.....+.++|. +++.|+|||||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 88999999999999999999999999999999999999999999999999999999999988773 47899999999
Q ss_pred CHHHHHhhcCeEEEEecceEE
Q 005532 315 DRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~ 335 (692)
|+..+.++||||++|++|.+.
T Consensus 201 dl~~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 201 DLALVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred cHHHHHHHhhheeeeeCCeEE
Confidence 999999999999999999984
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-45 Score=358.71 Aligned_cols=203 Identities=29% Similarity=0.462 Sum_probs=182.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
||+++||||.|+++.+++++||+|++||+++++||+||||||+||+|.++++|++|+|.++|.++. ++|+
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 589999999999999999999999999999999999999999999999999999999999998763 5677
Q ss_pred cccchhhcCCCccHHHHHHHHh--ccccH----HHHHHHHhhcCCCc-ccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAA--EDWRI----DDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~--~~~~~----~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
-|. ..++|++||.+|+.... ..|.. .++.++|+.+|+++ +..+++|++|||||||||.+||||+.+|+|||
T Consensus 81 iQq--igLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilL 158 (309)
T COG1125 81 IQQ--IGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILL 158 (309)
T ss_pred hhh--cccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEe
Confidence 664 47899999999998754 34654 35789999999975 58999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+++||+-++..|++.+.+ +++|||+||||++++.+++|||.+|++|+++.| +..++.+
T Consensus 159 MDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~-~~P~~il 224 (309)
T COG1125 159 MDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQY-DTPDEIL 224 (309)
T ss_pred ecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEe-CCHHHHH
Confidence 9999999999999999988764 577999999999999999999999999999987 4434443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=382.58 Aligned_cols=202 Identities=30% Similarity=0.455 Sum_probs=179.5
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEc
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (692)
..|+++|+++.||+..+++++||+|+.||+++|+|||||||||||++|+|+++|++|+|.++|.. ..||||+
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 45999999999998769999999999999999999999999999999999999999999998743 3699999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++++||++||..++.- ...+..+++++++++++.|+
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~---------------------------------------~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKL---------------------------------------RGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred CCccccCCCcHHHHhhhhhhh---------------------------------------CCCchHHHHHHHHHHHHHcC
Confidence 999999999999999644321 11233456788999999999
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhc
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~~~ 323 (692)
+. +.++|++.+|||||||||||||||+.+|+++|||||+|+||+..+..+...+ ++.+.|+|+||||..++..++
T Consensus 123 l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 123 LE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred Ch-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence 97 6899999999999999999999999999999999999999999887776554 457899999999999999999
Q ss_pred CeEEEEecceEEEe
Q 005532 324 TKIVETEMGVSRTY 337 (692)
Q Consensus 324 d~i~~l~~G~~~~~ 337 (692)
|+|++|++|++..+
T Consensus 202 dri~Vm~~G~i~Q~ 215 (338)
T COG3839 202 DRIVVMNDGRIQQV 215 (338)
T ss_pred CEEEEEeCCeeeec
Confidence 99999999998543
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-45 Score=361.87 Aligned_cols=191 Identities=36% Similarity=0.507 Sum_probs=171.6
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-----eeeeecccc
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-----~~~~~~q~~ 497 (692)
.++.++++++.|++..+|+|+||+|.+||+++|+||+||||||||++|+|+.+|++|+|.++|..+ ..+|++|+
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~- 80 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQE- 80 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEecc-
Confidence 358999999999999999999999999999999999999999999999999999999999998765 34677775
Q ss_pred hhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 498 AEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 498 ~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
+.+.|..||.+|+....... ..+.+.++|+.+|+. +..+++|.+|||||||||+|||||+.+|+|||||||+
T Consensus 81 -~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPF 158 (248)
T COG1116 81 -DALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPF 158 (248)
T ss_pred -CcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 46889999999998764421 234688999999995 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECC
Q 005532 572 NHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGS 616 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g 616 (692)
++||.-++..|++.|.+ .+.|||+||||.+++-.++|||++|.++
T Consensus 159 gALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~ 207 (248)
T COG1116 159 GALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNR 207 (248)
T ss_pred chhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCC
Confidence 99999999988887754 4679999999999999999999999984
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-45 Score=370.29 Aligned_cols=202 Identities=30% Similarity=0.482 Sum_probs=177.6
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCC---C--------ceEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---N--------MKIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~---~--------~~i~~ 165 (692)
+|.++|+++.|+..++++||||.|+.||++||.|||||||||||++|+|++.|++|.|.++|. + .+|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 489999999999999999999999999999999999999999999999999999999999875 2 36999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
|+|++.+++++||.+||..+..-. ....+...+..++.++|..
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~-------------------------------------~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVR-------------------------------------KERPSEAEIRARVEELLRL 124 (345)
T ss_pred EEechhhcccchHHhhhhhccccc-------------------------------------ccCCChhhHHHHHHHHHHH
Confidence 999999999999999997543100 0012223456788888988
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~ 321 (692)
+.+. ...+++|.+|||||+|||||||||+.+|++||||||+++||+..+..|..+| .+.|.|+|+||||.+++.+
T Consensus 125 vqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 8886 6889999999999999999999999999999999999999999877666655 4579999999999999999
Q ss_pred hcCeEEEEecceEEE
Q 005532 322 LCTKIVETEMGVSRT 336 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~ 336 (692)
+||+|++|++|++..
T Consensus 204 ladrvvvl~~G~Ieq 218 (345)
T COG1118 204 LADRVVVLNQGRIEQ 218 (345)
T ss_pred hcceEEEecCCeeee
Confidence 999999999999843
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=385.54 Aligned_cols=209 Identities=29% Similarity=0.454 Sum_probs=182.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEc
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (692)
+.|+++|++++|++..+++|+||+|++||+++|+|||||||||||++|+|+..|++|+|.++|.+ ..||+|+
T Consensus 4 ~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VF 83 (352)
T COG3842 4 PALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVF 83 (352)
T ss_pred ceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceee
Confidence 46999999999999999999999999999999999999999999999999999999999999853 3699999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|+..+|+++||+|||..++.-. ......++.+++.++|+.++
T Consensus 84 Q~YALFPHltV~~NVafGLk~~--------------------------------------~~~~~~~i~~rv~e~L~lV~ 125 (352)
T COG3842 84 QSYALFPHMTVEENVAFGLKVR--------------------------------------KKLKKAEIKARVEEALELVG 125 (352)
T ss_pred cCcccCCCCcHHHHhhhhhhhc--------------------------------------CCCCHHHHHHHHHHHHHHcC
Confidence 9999999999999997543200 00112235678889999999
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhc
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~~~ 323 (692)
+. ...+|++.+|||||||||||||||+.+|++||||||+|+||..-++.+...| ++.|+|+|+||||.+++..++
T Consensus 126 L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~ms 204 (352)
T COG3842 126 LE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMS 204 (352)
T ss_pred ch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhc
Confidence 97 5889999999999999999999999999999999999999999988876544 467999999999999999999
Q ss_pred CeEEEEecceEEEeccChHHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|+|++|++|++. -.|...+.
T Consensus 205 DrI~Vm~~G~I~-Q~gtP~ei 224 (352)
T COG3842 205 DRIAVMNDGRIE-QVGTPEEI 224 (352)
T ss_pred cceEEccCCcee-ecCCHHHH
Confidence 999999999984 34554433
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=363.16 Aligned_cols=205 Identities=31% Similarity=0.519 Sum_probs=180.2
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCcc-------ceeeeecc
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------VLPNYFEQ 495 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~-------~~~~~~~q 495 (692)
++|+++|+++.|+++++|+||||+|++|++++|+||||||||||+|+|+|+++|.+|+|.+.|.+ ..++|++|
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 56999999999996689999999999999999999999999999999999999999999998764 35789999
Q ss_pred cchhhcCCCccHHHHHHHHhcc---c-------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 496 NQAEALDLDKTVLETVAEAAED---W-------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~---~-------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
.......+..||.|.+...... | +.+.+.++|+++|+. +..++++++|||||+|||.|||||+++|+||
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~ll 161 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLL 161 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEE
Confidence 7655666789999999875211 1 135689999999995 7899999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||+++|+.++..++++|.++ +.|||+||||+..+..+||+|+.|++.-+ +.|+.+++.+
T Consensus 162 lLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln~~~~--~~G~~~~~~~ 227 (254)
T COG1121 162 LLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLI--ASGPPEEVLT 227 (254)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEcCeeE--eccChhhccC
Confidence 999999999999999999999865 45999999999999999999999976544 3577666654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=365.70 Aligned_cols=202 Identities=32% Similarity=0.515 Sum_probs=178.2
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
+++++|++++|+++++++|+||+|++|++++|+||||||||||||+|+|+++|.+|+|.++|.++. .+|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 589999999999999999999999999999999999999999999999999999999999998762 4688
Q ss_pred cccchhhcCCCccHHHHHHHHhc-------cccH---HHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE-------DWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~-------~~~~---~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
+|.. ...+..||.|.+..... .|.. +.+...|+.+|+ .+..++++.+|||||||||.|||||+++|+
T Consensus 82 pQ~~--~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~-~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 82 PQSP--SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGL-EHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred ccCC--CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCc-HHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 8764 45568899999886532 1222 247788999999 478899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhcC----ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEYK----GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~~----~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||||||++||+.+.-.+.+.++++. .|||+|+||++++.++||+++.|++|+++.. |.-.+.+
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~-G~p~evl 227 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQ-GTPEEVL 227 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEee-cCcchhc
Confidence 999999999999999999999998663 5999999999999999999999999999964 5544443
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=350.91 Aligned_cols=215 Identities=25% Similarity=0.417 Sum_probs=180.6
Q ss_pred CcEEEEeEEEEe-CCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------c
Q 005532 96 SGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (692)
Q Consensus 96 ~~l~i~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~ 161 (692)
.+|+++|+++.| +++.+|+||||+|++||+++|||++|||||||||+|.|+.+|++|+|.++|.. .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 469999999999 66789999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.|||++|.|.+.+..+|.+|++.+.-... .+...+ -.+...+-...+-+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~--------------------s~~~sl-----------fglfsk~dk~~Al~ 130 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYT--------------------STWRSL-----------FGLFSKEDKAQALD 130 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccc--------------------hHHHHH-----------hCCCCHHHHHHHHH
Confidence 59999999999999999999974321100 000000 01111222345667
Q ss_pred HhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHH
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~ 317 (692)
.|+.+|+. +....+..+|||||+|||+|||||+++|+|+|.|||+++|||.+.+.+.++|+ +.|.|||+..|+++
T Consensus 131 aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 131 ALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 89999997 45566689999999999999999999999999999999999999999988875 47999999999999
Q ss_pred HHHhhcCeEEEEecceEEEeccChHH
Q 005532 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.+.++|+||+-|++|++ .|+|..++
T Consensus 210 lA~~Y~~Riigl~~G~i-vfDg~~~e 234 (258)
T COG3638 210 LAKKYADRIIGLKAGRI-VFDGPASE 234 (258)
T ss_pred HHHHHHhhheEecCCcE-EEeCChhh
Confidence 99999999999999998 79998654
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=353.43 Aligned_cols=199 Identities=30% Similarity=0.503 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEcCCee----cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 423 SVVTIKNLEFGYEDRL----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~----~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
++|+++|+++.|+.+. ++++|||+|.+||++||+|++|||||||.++|+|+.+|++|+|.++|..+.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 5799999999999776 999999999999999999999999999999999999999999999996542
Q ss_pred --eeeecccchhhcCCCccHHHHHHHHhcc----ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 490 --PNYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
.++++|++...+.|..||.+.+.+.... ....++.++|+.+|++...+++++.+|||||+|||||||||..+|+
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pk 161 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPK 161 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCC
Confidence 2467888888899999999998876542 1234588999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEe
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~ 621 (692)
+|||||||++||......+.++|.+ ++-|+|+||||+..+..+||||++|++|.+++.
T Consensus 162 lLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~ 223 (252)
T COG1124 162 LLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEI 223 (252)
T ss_pred EEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEe
Confidence 9999999999999999999998864 455999999999999999999999999999874
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=339.20 Aligned_cols=202 Identities=28% Similarity=0.475 Sum_probs=177.9
Q ss_pred cEEEEeEEEEeCCee-ceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ce
Q 005532 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~ 162 (692)
+|+++||++.|++.+ +|+||||+|++||++.|+||+|||||||||+|.+...|++|+|.++|.+ .+
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 489999999997655 9999999999999999999999999999999999999999999998743 36
Q ss_pred EEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
||+|+|++.+.++.||+||+..++. + ......++.+++.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~----v-----------------------------------~G~~~~~i~~rV~~~ 121 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR----V-----------------------------------IGKPPREIRRRVSEV 121 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh----c-----------------------------------cCCCHHHHHHHHHHH
Confidence 9999999999999999999864321 0 012334567888899
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFL 319 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L---~~~~~tvI~vsHd~~~l 319 (692)
|+.+|+. +..+..|.+|||||||||+||||++.+|++||.||||-+|||.....+.+++ ...|.||||+|||.+.+
T Consensus 122 L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 122 LDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 9999997 4667778999999999999999999999999999999999999988887765 45799999999999999
Q ss_pred HhhcCeEEEEecceEEEec
Q 005532 320 DQLCTKIVETEMGVSRTYE 338 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~ 338 (692)
+++-.+++.+++|.+..+.
T Consensus 201 ~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 201 NRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HhccCcEEEEeCCEEEecc
Confidence 9999999999999986554
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=362.77 Aligned_cols=206 Identities=29% Similarity=0.435 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ceEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKIA 164 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~i~ 164 (692)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 468999999998889999999999999999999999999999999999999999999998632 2499
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..||.+|+...... . ..........++.++++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~---------------~-----------------------~~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLRE---------------H-----------------------TRLSEEEIREIVLEKLE 122 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhh---------------c-----------------------cCCCHHHHHHHHHHHHH
Confidence 999999887888999998532100 0 00011122345667888
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~ 320 (692)
.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .++|||+||||++++.
T Consensus 123 ~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 89996 456889999999999999999999999999999999999999999999888754 4889999999999999
Q ss_pred hhcCeEEEEecceEEEeccChHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.+||+|+++++|++ .+.|...+
T Consensus 202 ~~~d~v~~l~~G~i-~~~g~~~~ 223 (235)
T cd03261 202 AIADRIAVLYDGKI-VAEGTPEE 223 (235)
T ss_pred HhcCEEEEEECCeE-EEecCHHH
Confidence 99999999999998 46676544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=375.69 Aligned_cols=207 Identities=28% Similarity=0.443 Sum_probs=178.6
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v 166 (692)
.+|+++|++|+|++..+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||+
T Consensus 6 ~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v 85 (306)
T PRK13537 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVV 85 (306)
T ss_pred ceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEE
Confidence 46999999999998889999999999999999999999999999999999999999999998743 359999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..|++||+... .. +. ..+......++.++++.+
T Consensus 86 ~q~~~~~~~~tv~e~l~~~-~~--------------~~------------------------~~~~~~~~~~~~~~l~~~ 126 (306)
T PRK13537 86 PQFDNLDPDFTVRENLLVF-GR--------------YF------------------------GLSAAAARALVPPLLEFA 126 (306)
T ss_pred eccCcCCCCCcHHHHHHHH-HH--------------Hc------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999988889999998521 00 00 011122334566788888
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~ 323 (692)
|+. ...++++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++ .|+|||++||+++++..+|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~ 205 (306)
T PRK13537 127 KLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLC 205 (306)
T ss_pred CCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 567889999999999999999999999999999999999999999999887753 5899999999999999999
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|+++++|++ .+.|..++
T Consensus 206 d~i~il~~G~i-~~~g~~~~ 224 (306)
T PRK13537 206 DRLCVIEEGRK-IAEGAPHA 224 (306)
T ss_pred CEEEEEECCEE-EEECCHHH
Confidence 99999999998 46777544
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=379.58 Aligned_cols=207 Identities=28% Similarity=0.456 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------
Q 005532 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------ 160 (692)
+|+++|++|+|++ .++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 3899999999952 469999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.+++..||++|+...... ...+.....+++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v 121 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEIKRKV 121 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 2599999999988889999998532100 001112334567
Q ss_pred HHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd 315 (692)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+..++.++|++ .+.|||+|||+
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7889999996 578899999999999999999999999999999999999999999999887753 48999999999
Q ss_pred HHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
++.+.++||+|++|++|++. ..|...++
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv-~~g~~~~v 228 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELI-EQGTVSEI 228 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999984 56766443
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=359.92 Aligned_cols=208 Identities=28% Similarity=0.455 Sum_probs=180.7
Q ss_pred CcEEEEeEEEEeCCe-eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceE
Q 005532 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i 163 (692)
+++.++|++|+|++. ++|+++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.. .+|
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 358999999999876 89999999999999999999999999999999999999999999988754 359
Q ss_pred EEEcccCccC-CCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 164 AFLSQEFEVS-MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 164 ~~v~Q~~~~~-~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
|||+|+|..+ +..||.+++..+... ..++..++++++.++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n---------------------------------------~g~~~~e~~~rv~~~ 122 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLEN---------------------------------------LGLPREEIEERVAEA 122 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhh---------------------------------------cCCCHHHHHHHHHHH
Confidence 9999999654 466999998643211 113333567889999
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~ 318 (692)
+..+|+. +..++++.+||||||||||||.+|+.+|++|||||||++||+.+++.+.+++++ .|+|+|++|||+++
T Consensus 123 l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 123 LELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 9999997 568999999999999999999999999999999999999999999999887753 37899999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+..+||+++++++|++ .+.|...++
T Consensus 202 ~~~~ad~v~vl~~G~i-~~~g~p~~i 226 (235)
T COG1122 202 VLEYADRVVVLDDGKI-LADGDPAEI 226 (235)
T ss_pred HHhhCCEEEEEECCEE-eecCCHHHH
Confidence 9999999999999998 577865333
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=358.99 Aligned_cols=196 Identities=26% Similarity=0.452 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ce
Q 005532 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (692)
Q Consensus 98 l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~ 162 (692)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964 469999999999999999999999999999999999999999999998742 25
Q ss_pred EEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
|+|++|++.+++..||.||+...... . ....+....++.++
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 122 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRI---------------I------------------------GVPPRDANERVSAA 122 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999887888999998532100 0 00111223456778
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l 319 (692)
++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+||||++++
T Consensus 123 l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~ 201 (216)
T TIGR00960 123 LEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLV 201 (216)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8889986 567888999999999999999999999999999999999999999999887753 488999999999999
Q ss_pred HhhcCeEEEEecce
Q 005532 320 DQLCTKIVETEMGV 333 (692)
Q Consensus 320 ~~~~d~i~~l~~G~ 333 (692)
..+||+|+++++|+
T Consensus 202 ~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 202 ETYRHRTLTLSRGR 215 (216)
T ss_pred HHhCCEEEEEeCCc
Confidence 99999999999886
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=347.94 Aligned_cols=206 Identities=32% Similarity=0.433 Sum_probs=180.9
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------ 489 (692)
.++|++++|+++||++.+++|+||+|++||+++|+|++|||||||||+|.|+++|++|+|.++|.++.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 56799999999999999999999999999999999999999999999999999999999999998762
Q ss_pred -eeeecccchhhcCCCccHHHHHHHHhccc---cH----HHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccC
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDW---RI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~~~~~~~~~---~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~ 561 (692)
.++++|. -.++.++||+||+....... .. +-+..-|+.+|+.+...++.|++|||||++|++||||++.+
T Consensus 86 r~GvlFQ~--gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAiald 163 (263)
T COG1127 86 RMGVLFQQ--GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALD 163 (263)
T ss_pred heeEEeec--cccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcC
Confidence 2455554 46788999999998643221 11 23555688999987778999999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|+||++||||+||||-+...+.++|++. +.|+|+||||++.+..+||||++|.+|++. +.|+.++..+
T Consensus 164 Pell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~-~~Gt~~el~~ 235 (263)
T COG1127 164 PELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI-AEGTPEELLA 235 (263)
T ss_pred CCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE-EeCCHHHHHh
Confidence 9999999999999999999888888654 569999999999999999999999999998 5688877754
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=360.06 Aligned_cols=204 Identities=28% Similarity=0.394 Sum_probs=179.1
Q ss_pred eEEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
||++++|++.|+. ..+++||||+|++||++||||++|+|||||+|+|.++.+|++|+|.++|.++.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999985 36899999999999999999999999999999999999999999999997652
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
+++++|+ .++....||++|+.+.... +. ..++.++|+.+|++ +..+++|.+|||||||||+|||||+
T Consensus 81 ~R~~IGMIFQh--FnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa 157 (339)
T COG1135 81 LRQKIGMIFQH--FNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALA 157 (339)
T ss_pred HHhhccEEecc--ccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHh
Confidence 4566665 4677789999999876432 21 24688999999996 7889999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
.+|+|||+|||||+|||++.+.+.+.|++ ++-||++|||.++.+.++||||.+|++|++++.+.-++-|..
T Consensus 158 ~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~ 232 (339)
T COG1135 158 NNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFAN 232 (339)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcC
Confidence 99999999999999999999999998875 456999999999999999999999999999986544555544
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=356.64 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=170.1
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 468999999998889999999999999999999999999999999999999999999998742 259999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+++|+...... . .........++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03259 81 YALFPHLTVAENIAFGLKL---------------R------------------------GVPKAEIRARVRELLELVGLE 121 (213)
T ss_pred hhhccCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 9887788999998532100 0 000011234566788888986
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++|||++++..+||+
T Consensus 122 -~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 122 -GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred -hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999988754 488999999999999999999
Q ss_pred EEEEecceEE
Q 005532 326 IVETEMGVSR 335 (692)
Q Consensus 326 i~~l~~G~~~ 335 (692)
|+++++|++.
T Consensus 201 v~~l~~G~i~ 210 (213)
T cd03259 201 IAVMNEGRIV 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999874
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=380.09 Aligned_cols=207 Identities=26% Similarity=0.404 Sum_probs=179.0
Q ss_pred cEEEEeEEEEe-CCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEc
Q 005532 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (692)
Q Consensus 97 ~l~i~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (692)
+|+++|++++| ++.++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..||||+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 59999999999 77889999999999999999999999999999999999999999999998743 3599999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++++||+||+...+.. ..........++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 123 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKI---------------------------------------RGMPKAEIEERVAEAARILE 123 (356)
T ss_pred CCccccCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00111223456778899999
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~~ 323 (692)
+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|+ +.+.|+|+||||.+++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 124 LE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred Ch-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 96 67899999999999999999999999999999999999999999999887664 35899999999999999999
Q ss_pred CeEEEEecceEEEeccChHHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|+|++|++|++. ..|...+.
T Consensus 203 D~i~vl~~G~i~-~~g~~~~~ 222 (356)
T PRK11650 203 DRVVVMNGGVAE-QIGTPVEV 222 (356)
T ss_pred CEEEEEeCCEEE-EECCHHHH
Confidence 999999999984 45665443
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=407.93 Aligned_cols=337 Identities=22% Similarity=0.292 Sum_probs=238.0
Q ss_pred HHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCC--CeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 005532 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tv 309 (692)
+..++. +|+.+||....+++++.+|||||+|||+||++|+.+| +||||||||++||+..+++|.++|+ +.|.||
T Consensus 466 i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV 544 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL 544 (943)
T ss_pred HHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 345554 6888999633379999999999999999999999997 9999999999999999999988764 568999
Q ss_pred EEEecCHHHHHhhcCeEEEE------ecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcch
Q 005532 310 VIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (692)
Q Consensus 310 I~vsHd~~~l~~~~d~i~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 383 (692)
|+|+||++++. .||+|++| ++|++ .+.|.+.++...... + ...++ .+
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~---------------l--~~~~l---~~----- 597 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNS---------------L--TGQYL---SG----- 597 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhh---------------e--eehhh---cc-----
Confidence 99999999986 69999999 78887 577876543221000 0 00000 00
Q ss_pred hhhHHHHHHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcH
Q 005532 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463 (692)
Q Consensus 384 ~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGK 463 (692)
+. ....+.. + .....+.|+++|++. ..|+++||+|++|+++||+|+|||||
T Consensus 598 ~~--------------~~~~~~~--------~--~~~~~~~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGK 648 (943)
T PRK00349 598 KK--------------KIEVPKE--------R--RKGNGKFLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGK 648 (943)
T ss_pred cc--------------ccccccc--------c--cCCCcceEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCH
Confidence 00 0000000 0 011234689999862 35999999999999999999999999
Q ss_pred HHHHHHHh---------cCCCCCee------------EEEECCccce---------------------------------
Q 005532 464 STLLKLIM---------GLEKPRGG------------EVLLGEHNVL--------------------------------- 489 (692)
Q Consensus 464 STLl~~L~---------g~~~p~~G------------~i~~~~~~~~--------------------------------- 489 (692)
|||++-+. +...+..+ .|.++..++.
T Consensus 649 STLl~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~vdQ~pig~~~RS~~~Ty~g~~d~iR~lfa~~~~a~~~g~~ 728 (943)
T PRK00349 649 STLINETLYKALARKLNGAKKVPGKHKEIEGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDPIRELFAGTPEAKARGYK 728 (943)
T ss_pred HHHHHHHHHHHHHHHhcccccCCCCCcccccccCCCceEEEecCCCCCCCCCCceeeccccHHHHHHhccCccccccCCC
Confidence 99998763 11111111 1122211100
Q ss_pred eeeecccc------------------h------------------------------hhcCCCccHHHHHHHHhccccHH
Q 005532 490 PNYFEQNQ------------------A------------------------------EALDLDKTVLETVAEAAEDWRID 521 (692)
Q Consensus 490 ~~~~~q~~------------------~------------------------------~~l~~~~tv~e~~~~~~~~~~~~ 521 (692)
.+.|..|. . ..-..++|+.+++..........
T Consensus 729 ~~~FS~N~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~ltv~E~l~~f~~~~~i~ 808 (943)
T PRK00349 729 PGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVYVPCDVCKGKRYNRETLEVKYKGKNIADVLDMTVEEALEFFEAIPKIA 808 (943)
T ss_pred cccCCCCCCCCCCCcccccceEEEEeccCCCccccCccccCccccccceEEEECCCCHHHHhcCcHHHHHHHHHhchhhh
Confidence 00011010 0 00001245666655543322334
Q ss_pred HHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCC---cEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEE
Q 005532 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS---TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVIT 595 (692)
Q Consensus 522 ~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p---~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tvii 595 (692)
...+.|..+|+....+++++.+|||||+||+.||++|+.+| +|+||||||++||+..+..|.+.|.++ +.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999543578999999999999999999999999 999999999999999999999998865 459999
Q ss_pred EecCHHHHHhhccEEEEE------ECCEEEEecCChhHHHH
Q 005532 596 VSHDRYFVKQIVNRVVEV------KGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 596 vSHd~~~l~~~~d~i~~l------~~g~l~~~~g~~~~~~~ 630 (692)
||||++++. .||+|++| ++|+++ +.|..++...
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv-~~Gt~~el~~ 927 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEIV-ATGTPEEVAK 927 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEEE-EeCCHHHHHh
Confidence 999999996 69999999 678887 5677766643
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-43 Score=376.90 Aligned_cols=208 Identities=25% Similarity=0.390 Sum_probs=180.2
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEE
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v 166 (692)
++.|+++|+++.|++.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.. ..|+||
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 457999999999998889999999999999999999999999999999999999999999998742 369999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++++||+||+...+.. ...+.....+++.++++.+
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKM---------------------------------------LGVPKEERKQRVKEALELV 124 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999998643210 0011122345677888899
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhh
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~ 322 (692)
|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|+ +.+.|+|+||||.+++..+
T Consensus 125 gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 125 DLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 57799999999999999999999999999999999999999999999987764 3589999999999999999
Q ss_pred cCeEEEEecceEEEeccChHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+|++|++|++. ..|...+
T Consensus 204 aD~i~vm~~G~i~-~~g~~~~ 223 (351)
T PRK11432 204 SDTVIVMNKGKIM-QIGSPQE 223 (351)
T ss_pred CCEEEEEECCEEE-EEcCHHH
Confidence 9999999999984 4566543
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=374.54 Aligned_cols=209 Identities=28% Similarity=0.442 Sum_probs=178.5
Q ss_pred CCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEE
Q 005532 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIA 164 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~ 164 (692)
.+.+|+++|++++|+++.+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3457999999999999899999999999999999999999999999999999999999999998743 3599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..|+.||+... ... . .........++.++++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~-~~~--------------~------------------------~~~~~~~~~~~~~ll~ 158 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVF-GRY--------------F------------------------GMSTREIEAVIPSLLE 158 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHH-HHH--------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999888889999998521 000 0 0011112344567788
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~ 321 (692)
.+|+. +..++++.+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++ .|.|||++||+++++.+
T Consensus 159 ~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 159 FARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER 237 (340)
T ss_pred HcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 88986 567889999999999999999999999999999999999999999999988754 58999999999999999
Q ss_pred hcCeEEEEecceEEEeccChHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+||+|+++++|++ .+.|...+
T Consensus 238 ~~d~i~il~~G~i-~~~g~~~~ 258 (340)
T PRK13536 238 LCDRLCVLEAGRK-IAEGRPHA 258 (340)
T ss_pred hCCEEEEEECCEE-EEEcCHHH
Confidence 9999999999998 46676543
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=401.10 Aligned_cols=218 Identities=32% Similarity=0.540 Sum_probs=180.7
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhcCC
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~ 503 (692)
+|.++||+++|+++.+|+++||+|++|+++||+|||||||||||++|+|+++|++|+|.+++. ...+|+.|... . .
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-~~i~~~~q~~~-~--~ 76 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-WQLAWVNQETP-A--L 76 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCC-C--C
Confidence 489999999999999999999999999999999999999999999999999999999999874 34566665321 1 1
Q ss_pred CccHHHHHHHH--------------------------------hcccc-HHHHHHHHhhcCCCcccccccCCCCCHHHHH
Q 005532 504 DKTVLETVAEA--------------------------------AEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (692)
Q Consensus 504 ~~tv~e~~~~~--------------------------------~~~~~-~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 550 (692)
..++.+++... ...|. ...+..+|..+||.....++++.+|||||||
T Consensus 77 ~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerq 156 (638)
T PRK10636 77 PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRM 156 (638)
T ss_pred CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHH
Confidence 12333222110 00111 2357789999999645678999999999999
Q ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 551 rv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||+||++|+.+|+||||||||||||+.++.||.++|.++++|||+||||++++..+||+|++|++|++..|.|+|+.|..
T Consensus 157 Rv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~~~g~~~~~~~ 236 (638)
T PRK10636 157 RLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236 (638)
T ss_pred HHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEEecCCHHHHHH
Confidence 99999999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred HhHHHHHHHHHHHHH
Q 005532 631 KNLDAREKELEREAE 645 (692)
Q Consensus 631 ~~~~~~~~~~~~~~~ 645 (692)
+++.+.+.+.+.+.+
T Consensus 237 ~~~~~~~~~~~~~~~ 251 (638)
T PRK10636 237 QRATRLAQQQAMYES 251 (638)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776544433333333
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=354.16 Aligned_cols=202 Identities=29% Similarity=0.492 Sum_probs=172.5
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEcc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (692)
|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 578999999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..||++|+..... .. .........++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03265 81 DLSVDDELTGWENLYIHAR---------------LY------------------------GVPGAERRERIDELLDFVGL 121 (220)
T ss_pred CccccccCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 9988778899999852110 00 00111233456788899998
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d 324 (692)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 122 L-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred H-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 567889999999999999999999999999999999999999999999887743 48899999999999999999
Q ss_pred eEEEEecceEEEeccC
Q 005532 325 KIVETEMGVSRTYEGN 340 (692)
Q Consensus 325 ~i~~l~~G~~~~~~G~ 340 (692)
+|+++++|++. ..|.
T Consensus 201 ~i~~l~~G~i~-~~~~ 215 (220)
T cd03265 201 RVAIIDHGRII-AEGT 215 (220)
T ss_pred EEEEEeCCEEE-EeCC
Confidence 99999999984 3454
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-43 Score=376.59 Aligned_cols=207 Identities=29% Similarity=0.461 Sum_probs=179.8
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEc
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~ 167 (692)
.+|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|+||+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 35999999999998889999999999999999999999999999999999999999999998743 3599999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++++||+||+...+.. ...+......++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~l~ 123 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKN---------------------------------------RGMGRAEVAERVAELLDLVG 123 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00111233457788899999
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhc
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~~ 323 (692)
+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|+ +.+.|+|+||||.+++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 124 LP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred CC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 97 57899999999999999999999999999999999999999999999987764 35899999999999999999
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|++|++|++. ..|...+
T Consensus 203 d~i~vl~~G~i~-~~g~~~~ 221 (353)
T TIGR03265 203 DRIVVMNHGVIE-QVGTPQE 221 (353)
T ss_pred CEEEEEECCEEE-EEcCHHH
Confidence 999999999984 4565443
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=336.86 Aligned_cols=206 Identities=31% Similarity=0.501 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCee-ceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEE
Q 005532 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v 166 (692)
+|++.+++++|++.. +++||||+++.|+++||+|||||||||+|++|++++.|++|+|+++|.+ .+||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 488999999999876 9999999999999999999999999999999999999999999998743 369999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+-+..++..+|++|||.+ |... ..+...++++++.++.+.|
T Consensus 81 ~~e~glY~RlT~rEnl~~-Fa~L--------------------------------------~~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKY-FARL--------------------------------------NGLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHH-HHHH--------------------------------------hhhhhhHHHHHHHHHHHHh
Confidence 987888889999999864 2111 0122234577888999999
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH---ccCCCeEEEEecCHHHHHhhc
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L---~~~~~tvI~vsHd~~~l~~~~ 323 (692)
++. +..|+.+.+||-|+||||+|||||+++|++|||||||||||..+...+.+++ ++.|++||++||+++++..+|
T Consensus 122 ~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 122 QLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 996 6889999999999999999999999999999999999999999999988875 456999999999999999999
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|++++.|++ .+.|+...
T Consensus 201 Drvivlh~Gev-v~~gs~~~ 219 (245)
T COG4555 201 DRVIVLHKGEV-VLEGSIEA 219 (245)
T ss_pred heEEEEecCcE-EEcCCHHH
Confidence 99999999997 67887543
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=369.37 Aligned_cols=205 Identities=28% Similarity=0.432 Sum_probs=175.1
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (692)
+|+++|++++|++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++
T Consensus 4 ~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 4 AIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 5999999999998889999999999999999999999999999999999999999999998742 3599999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++..||.+|+.... .. . ..+......++.++++.+|
T Consensus 84 q~~~~~~~~tv~e~l~~~~-~~--------------~------------------------~~~~~~~~~~~~~ll~~~~ 124 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFG-RY--------------F------------------------GMSTREIEAVIPSLLEFAR 124 (303)
T ss_pred ccccCCcCCcHHHHHHHHH-HH--------------c------------------------CCCHHHHHHHHHHHHHHCC
Confidence 9998878899999985210 00 0 0011112334566788888
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d 324 (692)
+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .|.|||++|||++++..+||
T Consensus 125 l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 125 LE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCD 203 (303)
T ss_pred Ch-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 86 567888999999999999999999999999999999999999999999887753 58999999999999999999
Q ss_pred eEEEEecceEEEeccChH
Q 005532 325 KIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 325 ~i~~l~~G~~~~~~G~y~ 342 (692)
+|+++++|++ .+.|...
T Consensus 204 ~i~~l~~G~i-~~~g~~~ 220 (303)
T TIGR01288 204 RLCVLESGRK-IAEGRPH 220 (303)
T ss_pred EEEEEECCEE-EEEcCHH
Confidence 9999999997 4567653
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=365.74 Aligned_cols=207 Identities=30% Similarity=0.501 Sum_probs=177.7
Q ss_pred CcEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEE
Q 005532 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (692)
Q Consensus 96 ~~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~ 165 (692)
..++++|+++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.++|.+ .+|||
T Consensus 3 ~~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy 82 (293)
T COG1131 3 EVIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGY 82 (293)
T ss_pred ceeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEE
Confidence 3588999999999 6999999999999999999999999999999999999999999999998732 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|+|.+++.+|++||+.... .+.. ......++++.++++.
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~---------------~l~~------------------------~~~~~~~~~~~~~l~~ 123 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFA---------------RLYG------------------------LSKEEAEERIEELLEL 123 (293)
T ss_pred EccCCCCCccccHHHHHHHHH---------------HHhC------------------------CChhHHHHHHHHHHHH
Confidence 999999999999999984210 0000 0001234678899999
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CC-CeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~-~tvI~vsHd~~~l~~ 321 (692)
+|+.. ..++++.+||+|||||+.||.||+.+|+||||||||+|||+.++..+.++|++ .+ .|||++||.++.+..
T Consensus 124 ~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 124 FGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred cCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 99985 44788999999999999999999999999999999999999999999888753 45 799999999999999
Q ss_pred hcCeEEEEecceEEEeccChHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+||+|+++++|++ .+.|...+
T Consensus 203 ~~d~v~il~~G~~-~~~g~~~~ 223 (293)
T COG1131 203 LCDRVIILNDGKI-IAEGTPEE 223 (293)
T ss_pred hCCEEEEEeCCEE-EEeCCHHH
Confidence 9999999999998 45665443
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=351.20 Aligned_cols=199 Identities=30% Similarity=0.462 Sum_probs=170.6
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 468999999998899999999999999999999999999999999999999999999998642 259999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+++|+...... . ........+++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKL---------------R------------------------KVPKDEIDERVREVAELLQIE 121 (213)
T ss_pred hhhccCCCHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999998532100 0 001112234566778888986
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
...++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||+||||++++..+||+
T Consensus 122 -~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 122 -HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 567889999999999999999999999999999999999999999999887753 489999999999999999999
Q ss_pred EEEEecceEEE
Q 005532 326 IVETEMGVSRT 336 (692)
Q Consensus 326 i~~l~~G~~~~ 336 (692)
|+++++|++..
T Consensus 201 i~~l~~g~~~~ 211 (213)
T cd03301 201 IAVMNDGQIQQ 211 (213)
T ss_pred EEEEECCEEEe
Confidence 99999998753
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=375.15 Aligned_cols=209 Identities=27% Similarity=0.412 Sum_probs=180.4
Q ss_pred CCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEE
Q 005532 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAF 165 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~ 165 (692)
.++.|+++|++++|++.++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|+|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 4556999999999998889999999999999999999999999999999999999999999998753 35999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++.+||.||+...+.. ...+......++.++++.
T Consensus 91 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~~~~~l~~ 131 (375)
T PRK09452 91 VFQSYALFPHMTVFENVAFGLRM---------------------------------------QKTPAAEITPRVMEALRM 131 (375)
T ss_pred EecCcccCCCCCHHHHHHHHHhh---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001112234567788899
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~ 321 (692)
+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|+ +.+.|+|+||||.+++..
T Consensus 132 ~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~ 210 (375)
T PRK09452 132 VQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALT 210 (375)
T ss_pred cCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 9996 67899999999999999999999999999999999999999999999987764 358999999999999999
Q ss_pred hcCeEEEEecceEEEeccChHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+||+|++|++|++. ..|...+
T Consensus 211 laDri~vl~~G~i~-~~g~~~~ 231 (375)
T PRK09452 211 MSDRIVVMRDGRIE-QDGTPRE 231 (375)
T ss_pred hCCEEEEEECCEEE-EEcCHHH
Confidence 99999999999984 4565543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=353.16 Aligned_cols=195 Identities=30% Similarity=0.501 Sum_probs=166.3
Q ss_pred EEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------
Q 005532 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (692)
Q Consensus 98 l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------- 160 (692)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999986 689999999999999999999999999999999999999999999998632
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..++|++|++.+++..||.||+...... . ........+++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL---------------A------------------------GVPKKERRERA 121 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887788999998532100 0 00011123456
Q ss_pred HHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd 315 (692)
.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .++|||+||||
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 122 EELLERVGLG-DRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 6788889996 456888999999999999999999999999999999999999999999887753 47899999999
Q ss_pred HHHHHhhcCeEEEEecce
Q 005532 316 RAFLDQLCTKIVETEMGV 333 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~ 333 (692)
++++. +||+++++++|+
T Consensus 201 ~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 201 PELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHh-hhcEEEEeeCCc
Confidence 99997 999999999886
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=376.54 Aligned_cols=206 Identities=27% Similarity=0.426 Sum_probs=177.2
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEcc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (692)
.|+++|++++|+++++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 5999999999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..||++|+...... . .........++.++++.+|+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKL---------------A------------------------GAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred CcccCCCCCHHHHHHhHHhh---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99988899999998532110 0 01111234567788899999
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d 324 (692)
. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++ .+.|+|+||||++++..+||
T Consensus 124 ~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred h-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 6 577899999999999999999999999999999999999999999988877643 48999999999999999999
Q ss_pred eEEEEecceEEEeccChHH
Q 005532 325 KIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 325 ~i~~l~~G~~~~~~G~y~~ 343 (692)
+|++|++|++. ..|...+
T Consensus 203 ~i~vl~~G~i~-~~g~~~~ 220 (369)
T PRK11000 203 KIVVLDAGRVA-QVGKPLE 220 (369)
T ss_pred EEEEEECCEEE-EEcCHHH
Confidence 99999999984 4566543
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-42 Score=355.57 Aligned_cols=209 Identities=29% Similarity=0.446 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEcc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (692)
.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999998742 25999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..||.+|+....... ... ...+......++.++++.+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~---------------~~~--------------------~~~~~~~~~~~~~~~l~~~~l 126 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVK---------------PRS--------------------ERPPEAEIRAKVHELLKLVQL 126 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhc---------------ccc--------------------ccCCHHHHHHHHHHHHHHcCC
Confidence 998877889999985321100 000 000001123456677888898
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d 324 (692)
. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .++|||+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 127 D-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred h-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 6 567888999999999999999999999999999999999999999999887753 37899999999999999999
Q ss_pred eEEEEecceEEEeccChH
Q 005532 325 KIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 325 ~i~~l~~G~~~~~~G~y~ 342 (692)
+|+++++|++. +.|...
T Consensus 206 ~i~~l~~G~i~-~~~~~~ 222 (239)
T cd03296 206 RVVVMNKGRIE-QVGTPD 222 (239)
T ss_pred EEEEEECCeEE-EecCHH
Confidence 99999999974 556543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=400.73 Aligned_cols=327 Identities=24% Similarity=0.309 Sum_probs=227.5
Q ss_pred HhhhcCCCccccccccccCChHHHHHHHHHHHHccCC--CeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~ 316 (692)
.|..+|+....+++++.+|||||+|||+||++|+.+| ++|||||||+|||+..+++|.++|+ +.|.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3677888532368999999999999999999999986 8999999999999999999988764 4689999999999
Q ss_pred HHHHhhcCeEEEE------ecceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHH
Q 005532 317 AFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (692)
Q Consensus 317 ~~l~~~~d~i~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 390 (692)
+++. .||+|++| ++|++ .+.|.+.++..... .....+.. +..
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~I-v~~g~~~el~~~~~---------------------~lt~~~l~----~~~----- 597 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEV-VASGTPEEILANPD---------------------SLTGQYLS----GKK----- 597 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEE-eeccCHHHHhcCch---------------------heeeeccc----ccc-----
Confidence 9986 89999999 78876 56676543211000 00000000 000
Q ss_pred HHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHH
Q 005532 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (692)
Q Consensus 391 ~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L 470 (692)
....+. .......+.|+++|++. ..|+++||+|+.|++++|+|+||||||||++-.
T Consensus 598 ---------~~~~~~----------~~~~~~~~~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~~ 653 (924)
T TIGR00630 598 ---------KIEVPK----------ERRPGNGKFLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLINDT 653 (924)
T ss_pred ---------cccccc----------cccCCCcceEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 000000 00011234699999873 359999999999999999999999999999822
Q ss_pred h---------c-CCCCC-----ee------EEEECCccce---------------------------------eeeeccc
Q 005532 471 M---------G-LEKPR-----GG------EVLLGEHNVL---------------------------------PNYFEQN 496 (692)
Q Consensus 471 ~---------g-~~~p~-----~G------~i~~~~~~~~---------------------------------~~~~~q~ 496 (692)
. + ..+|. .| .|.++..++. .+.|..|
T Consensus 654 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vdQ~pi~~~~RS~~aTy~~~~d~iR~lfa~~~~a~~~g~~~~~FSfN 733 (924)
T TIGR00630 654 LYPALARRLNGAKTQPGRYKSIEGLEHLDKVIHIDQSPIGRTPRSNPATYTGVFDEIRELFAETPEAKARGYTPGRFSFN 733 (924)
T ss_pred HHHHHHHHhcccccCCCCcCccccccCCCceEEEecCCCCCCCCCchhhhhhhHHHHHHHHhcCCccccCCCChhhcCCC
Confidence 2 1 11110 11 1333322110 0011111
Q ss_pred ch-------------------------------------h-----------hcCCCccHHHHHHHHhccccHHHHHHHHh
Q 005532 497 QA-------------------------------------E-----------ALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (692)
Q Consensus 497 ~~-------------------------------------~-----------~l~~~~tv~e~~~~~~~~~~~~~~~~~L~ 528 (692)
.. + .-..++|+.|.+..............+|.
T Consensus 734 ~~~G~C~~C~G~G~~~~~~~f~~~~~~~C~~C~G~R~~~e~l~v~~~g~~i~dvl~~tv~e~~~f~~~~~~i~~~l~~L~ 813 (924)
T TIGR00630 734 VKGGRCEACQGDGVIKIEMHFLPDVYVPCEVCKGKRYNRETLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLC 813 (924)
T ss_pred CCCCCCCCCccceEEEEEccCCCCcccCCCCcCCceeChHHHhceeCCCCHHHHhCCcHHHHHHHHHhccchhHHHHHHH
Confidence 00 0 00012344444443322222334567888
Q ss_pred hcCCCcccccccCCCCCHHHHHHHHHHHHhcc---CCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHH
Q 005532 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVK---PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYF 602 (692)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~---~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~ 602 (692)
.+|+....+++++.+|||||+|||.||++|+. +|+|+||||||++||+.++..|.+.|.++ +.|||+||||+++
T Consensus 814 ~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~ 893 (924)
T TIGR00630 814 DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDV 893 (924)
T ss_pred HcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH
Confidence 89995435789999999999999999999997 59999999999999999999999999866 4699999999999
Q ss_pred HHhhccEEEEE------ECCEEEEecCChh
Q 005532 603 VKQIVNRVVEV------KGSNLQDYAGDYN 626 (692)
Q Consensus 603 l~~~~d~i~~l------~~g~l~~~~g~~~ 626 (692)
+. .||+|++| ++|+++ +.|..+
T Consensus 894 i~-~aD~ii~Lgp~~G~~gG~iv-~~G~~~ 921 (924)
T TIGR00630 894 IK-TADYIIDLGPEGGDGGGTIV-ASGTPE 921 (924)
T ss_pred HH-hCCEEEEecCCccCCCCEEE-EeCCHH
Confidence 96 59999999 688887 456544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=361.26 Aligned_cols=210 Identities=21% Similarity=0.321 Sum_probs=176.4
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------c
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~ 161 (692)
+.+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 356999999999998889999999999999999999999999999999999999999999998732 2
Q ss_pred eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.|+|++|++.+++..|+.+|+...+... . ..+......++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~--------------~------------------------~~~~~~~~~~~~~ 126 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREH--------------T------------------------QLPAPLLHSTVMM 126 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHc--------------c------------------------CCCHHHHHHHHHH
Confidence 4999999998877889999985321100 0 0000111234567
Q ss_pred HhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~ 317 (692)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++
T Consensus 127 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 127 KLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 78888986 567888999999999999999999999999999999999999999999887753 3789999999999
Q ss_pred HHHhhcCeEEEEecceEEEeccChHHH
Q 005532 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
++..+||+|+++++|++. +.|...++
T Consensus 206 ~~~~~~d~v~~l~~G~i~-~~g~~~~~ 231 (269)
T PRK11831 206 EVLSIADHAYIVADKKIV-AHGSAQAL 231 (269)
T ss_pred HHHHhhCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999984 56765443
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=350.50 Aligned_cols=196 Identities=29% Similarity=0.513 Sum_probs=167.9
Q ss_pred EEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ceE
Q 005532 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (692)
Q Consensus 98 l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~i 163 (692)
|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 78999999994 6789999999999999999999999999999999999999999999998732 259
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..|+.+|+...... . .......+.++.+++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 122 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEV---------------R------------------------GKKEREIQRRVGAAL 122 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999887788999998532100 0 001112234566788
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~ 320 (692)
+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .++|||+|||+++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 123 RQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201 (214)
T ss_pred HHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 888986 467888999999999999999999999999999999999999999999888753 5899999999999999
Q ss_pred hhcCeEEEEecce
Q 005532 321 QLCTKIVETEMGV 333 (692)
Q Consensus 321 ~~~d~i~~l~~G~ 333 (692)
.+||+|+++++|+
T Consensus 202 ~~~d~i~~l~~G~ 214 (214)
T TIGR02673 202 RVAHRVIILDDGR 214 (214)
T ss_pred HhcCEEEEecCCC
Confidence 9999999998874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=350.84 Aligned_cols=198 Identities=31% Similarity=0.429 Sum_probs=169.0
Q ss_pred EEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----ceEEEEcc
Q 005532 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (692)
Q Consensus 98 l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----~~i~~v~Q 168 (692)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 468999999987 789999999999999999999999999999999999999999999998743 36999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..|+.+|+...... . .........++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 81 QDALLPWLTVLDNVALGLEL---------------Q------------------------GVPKAEARERAEELLELVGL 121 (220)
T ss_pred ccccccCCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99887778999998532100 0 00011123456678888898
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcC
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d 324 (692)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+|||+++++..+||
T Consensus 122 ~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 122 S-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred h-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 6 467888999999999999999999999999999999999999999999887753 47899999999999999999
Q ss_pred eEEEEe--cceEE
Q 005532 325 KIVETE--MGVSR 335 (692)
Q Consensus 325 ~i~~l~--~G~~~ 335 (692)
+|++++ +|++.
T Consensus 201 ~i~~l~~~~G~i~ 213 (220)
T cd03293 201 RVVVLSARPGRIV 213 (220)
T ss_pred EEEEEECCCCEEE
Confidence 999999 68873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=343.75 Aligned_cols=193 Identities=35% Similarity=0.511 Sum_probs=167.4
Q ss_pred eEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+++++||++.|+. ..+|+++||+|++||+++|+||+||||||||++|.|+..|++|.|.++|.++.
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 4689999999964 36899999999999999999999999999999999999999999999986652
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhc---cc---cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE---DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.++++|+ .++.+.+|+.||+..... .. ....+..+++.+|+.....+++|.+|||||||||||||||+
T Consensus 81 R~~~iGfvFQ~--~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~ 158 (226)
T COG1136 81 RRKKIGFVFQN--FNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALI 158 (226)
T ss_pred HHHhEEEECcc--CCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHh
Confidence 4677765 578899999999985421 11 23457788999999655555889999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEE
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~ 619 (692)
.+|+|||.||||.+||.++.+.+.++|.+. +.||||||||...+. +|||++.|.+|++.
T Consensus 159 ~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~-~~dr~i~l~dG~~~ 221 (226)
T COG1136 159 NNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAK-YADRVIELKDGKIE 221 (226)
T ss_pred cCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hCCEEEEEeCCeee
Confidence 999999999999999999999999998865 459999999999886 59999999999854
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=347.56 Aligned_cols=198 Identities=28% Similarity=0.515 Sum_probs=170.4
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------ceEEEEcccCc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------~~i~~v~Q~~~ 171 (692)
|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 468999999998889999999999999999999999999999999999999999999998754 35999999998
Q ss_pred cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcc
Q 005532 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (692)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (692)
+++..|+.||+..... .. .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~ 120 (210)
T cd03269 81 LYPKMKVIDQLVYLAQ---------------LK------------------------GLKKEEARRRIDEWLERLELS-E 120 (210)
T ss_pred CCcCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHHcCCh-H
Confidence 8778899999752100 00 001112234566788888986 4
Q ss_pred ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEE
Q 005532 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (692)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~i~~ 328 (692)
..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++..+||++++
T Consensus 121 ~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 67788999999999999999999999999999999999999999999887753 478999999999999999999999
Q ss_pred EecceEE
Q 005532 329 TEMGVSR 335 (692)
Q Consensus 329 l~~G~~~ 335 (692)
+++|++.
T Consensus 201 l~~g~i~ 207 (210)
T cd03269 201 LNKGRAV 207 (210)
T ss_pred EeCCEEE
Confidence 9999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=372.69 Aligned_cols=207 Identities=26% Similarity=0.424 Sum_probs=179.4
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCc--cEEEECCCC--------ceEEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS--GNVIKAKSN--------MKIAFL 166 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~--G~I~~~~~~--------~~i~~v 166 (692)
.|+++|++++|++..+|+|+||+|++|++++|+|||||||||||++|+|+++|++ |+|.++|.. ..|+|+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 3899999999998889999999999999999999999999999999999999999 999998743 359999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++.+||+||+...+.. ..........++.++++.+
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRA---------------------------------------QKMPKADIAERVADALKLV 125 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998643210 0011223345677889999
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cC-CCeEEEEecCHHHHHh
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ-DVPMVIISHDRAFLDQ 321 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~-~~tvI~vsHd~~~l~~ 321 (692)
|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|+ +. |.|+|+||||++++..
T Consensus 126 gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 126 GLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT 204 (362)
T ss_pred CCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 996 57899999999999999999999999999999999999999999999988764 23 7899999999999999
Q ss_pred hcCeEEEEecceEEEeccChHHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+||+|++|++|++. ..|...+.
T Consensus 205 l~dri~vl~~G~i~-~~g~~~~~ 226 (362)
T TIGR03258 205 LADKAGIMKDGRLA-AHGEPQAL 226 (362)
T ss_pred hCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999984 55765443
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=349.86 Aligned_cols=198 Identities=31% Similarity=0.497 Sum_probs=170.4
Q ss_pred EEEEeEEEEeCCe----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEE
Q 005532 98 VKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIA 164 (692)
Q Consensus 98 l~i~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~ 164 (692)
|+++|++++|++. ++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 7899999999876 79999999999999999999999999999999999999999999998743 2599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..||.||+..... .. .........++.++++
T Consensus 82 ~~~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~ 122 (218)
T cd03266 82 FVSDSTGLYDRLTARENLEYFAG---------------LY------------------------GLKGDELTARLEELAD 122 (218)
T ss_pred EecCCcccCcCCCHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHH
Confidence 99999988777899999852110 00 0011122345667888
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~ 321 (692)
.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..
T Consensus 123 ~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~ 201 (218)
T cd03266 123 RLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVER 201 (218)
T ss_pred HcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 88986 567888999999999999999999999999999999999999999999888753 48899999999999999
Q ss_pred hcCeEEEEecceEE
Q 005532 322 LCTKIVETEMGVSR 335 (692)
Q Consensus 322 ~~d~i~~l~~G~~~ 335 (692)
+||+++++++|++.
T Consensus 202 ~~d~i~~l~~G~i~ 215 (218)
T cd03266 202 LCDRVVVLHRGRVV 215 (218)
T ss_pred hcCEEEEEECCEEe
Confidence 99999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=371.06 Aligned_cols=211 Identities=29% Similarity=0.443 Sum_probs=179.3
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEcc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q 168 (692)
.|+++|++++|++.++|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++.+||.||+...+... .. ....+.....+++.++++.+|+
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~--------------~~---------------------~~~~~~~~~~~~~~~~l~~~~L 126 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVL--------------PR---------------------RERPNAAAIKAKVTQLLEMVQL 126 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhc--------------cc---------------------ccCCCHHHHHHHHHHHHHHcCC
Confidence 999989999999986332100 00 0001112334577788999999
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcC
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~~d 324 (692)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.+.|+|+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 127 A-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred c-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 57899999999999999999999999999999999999999999998887764 348999999999999999999
Q ss_pred eEEEEecceEEEeccChHHH
Q 005532 325 KIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 325 ~i~~l~~G~~~~~~G~y~~~ 344 (692)
+|++|++|++. ..|...+.
T Consensus 206 ri~vl~~G~i~-~~g~~~~i 224 (353)
T PRK10851 206 RVVVMSQGNIE-QAGTPDQV 224 (353)
T ss_pred EEEEEECCEEE-EEcCHHHH
Confidence 99999999984 55765443
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=353.40 Aligned_cols=215 Identities=27% Similarity=0.423 Sum_probs=174.7
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (692)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 468999999998889999999999999999999999999999999999999999999998732 249999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..||++|+........ .. ..... ...........++.++++.+
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~-----------~~-~~~~~-----------------~~~~~~~~~~~~~~~~l~~~ 131 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQART-----------GS-GLLLA-----------------RARREEREARERAEELLERV 131 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhcc-----------cc-ccccc-----------------cccccHHHHHHHHHHHHHHc
Confidence 999988888899999853211000 00 00000 00000112234567888899
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~ 323 (692)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .++|||+||||++++..+|
T Consensus 132 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 132 GLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred Ccc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 996 567889999999999999999999999999999999999999999999888753 5789999999999999999
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|+++++|++. +.|..++
T Consensus 211 d~i~~l~~G~i~-~~~~~~~ 229 (236)
T cd03219 211 DRVTVLDQGRVI-AEGTPDE 229 (236)
T ss_pred CEEEEEeCCEEE-eecCHHH
Confidence 999999999984 5565443
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-42 Score=363.94 Aligned_cols=206 Identities=25% Similarity=0.486 Sum_probs=177.2
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (692)
.++++|++++|++..+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 3899999999998889999999999999999999999999999999999999999999998743 2599999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.++++.|+.||+..... +. ..+......++.++++.+|
T Consensus 82 q~~~l~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~g 122 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAG---------------IY------------------------GMKGQLLKQRVEEMIELVG 122 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHCC
Confidence 99998888999999742100 00 0111122345677888999
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCe
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~d~ 325 (692)
+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.+.|++ .++|||++||+++++.++||+
T Consensus 123 l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 123 LR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred Cc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE
Confidence 97 467899999999999999999999999999999999999999999999887754 378999999999999999999
Q ss_pred EEEEecceEEEeccChHH
Q 005532 326 IVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 326 i~~l~~G~~~~~~G~y~~ 343 (692)
|+++++|++. +.|...+
T Consensus 202 i~~l~~G~i~-~~g~~~~ 218 (301)
T TIGR03522 202 VIIINKGKIV-ADKKLDE 218 (301)
T ss_pred EEEEECCEEE-EeCCHHH
Confidence 9999999984 6787644
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=371.94 Aligned_cols=208 Identities=25% Similarity=0.410 Sum_probs=179.2
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEE
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v 166 (692)
.++|+++|++++|++.++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|||+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 456999999999998889999999999999999999999999999999999999999999998753 259999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++++||.||+...+.. .........+++.++++.+
T Consensus 97 fQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~l 137 (377)
T PRK11607 97 FQSYALFPHMTVEQNIAFGLKQ---------------------------------------DKLPKAEIASRVNEMLGLV 137 (377)
T ss_pred eCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999998643210 0011122345677889999
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhh
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~~ 322 (692)
|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++...| ++.+.|+|+||||.+++..+
T Consensus 138 ~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l 216 (377)
T PRK11607 138 HMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTM 216 (377)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 5789999999999999999999999999999999999999999998887544 45689999999999999999
Q ss_pred cCeEEEEecceEEEeccChHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+|++|++|++. ..|...+
T Consensus 217 aDri~vl~~G~i~-~~g~~~~ 236 (377)
T PRK11607 217 AGRIAIMNRGKFV-QIGEPEE 236 (377)
T ss_pred CCEEEEEeCCEEE-EEcCHHH
Confidence 9999999999984 4566443
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=355.37 Aligned_cols=210 Identities=24% Similarity=0.417 Sum_probs=177.7
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------- 160 (692)
+.|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 83 (257)
T PRK10619 4 NKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83 (257)
T ss_pred ccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccccccc
Confidence 45999999999998899999999999999999999999999999999999999999999998732
Q ss_pred --------ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCc
Q 005532 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (692)
Q Consensus 161 --------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (692)
..|+|++|++.+++..|++||+...... +. ....
T Consensus 84 ~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~--------------~~------------------------~~~~ 125 (257)
T PRK10619 84 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSK 125 (257)
T ss_pred chHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH--------------hC------------------------CCCH
Confidence 2599999999887788999998532100 00 0011
Q ss_pred ccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeE
Q 005532 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (692)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tv 309 (692)
.....++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.|+||
T Consensus 126 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~ti 205 (257)
T PRK10619 126 QEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTM 205 (257)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 12244567788899996433478899999999999999999999999999999999999999999988764 358999
Q ss_pred EEEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 310 I~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|+||||++++..+||+|+++++|++. +.|.+.++
T Consensus 206 iivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 239 (257)
T PRK10619 206 VVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQL 239 (257)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 99999999999999999999999984 66776554
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-43 Score=368.39 Aligned_cols=206 Identities=28% Similarity=0.460 Sum_probs=182.3
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeee
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYF 493 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~ 493 (692)
.+.++++||++.|++..+++|+||+|++||+++|+|||||||||||++|+|+..|++|+|.++|.++. .+++
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 35699999999999999999999999999999999999999999999999999999999999998763 3567
Q ss_pred cccchhhcCCCccHHHHHHHHhc-cc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE-DW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~-~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
+|+ +.++|++||.+|+.+... .+ . ...+.++|+.+++. +..++++++|||||||||+|||||+.+|+|||
T Consensus 83 FQ~--YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 83 FQS--YALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ecC--cccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 764 679999999999988755 11 1 23688999999995 68899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||.++||..-++.+...|++ .+.|.|+||||.+++..++|||++|++|+|....-+.+-|..
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999888877664 456999999999999999999999999999876555555543
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=370.25 Aligned_cols=205 Identities=29% Similarity=0.501 Sum_probs=174.6
Q ss_pred cEEEEeEEEEeC----CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------
Q 005532 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (692)
Q Consensus 97 ~l~i~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------ 160 (692)
+|+++|++|+|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 388999999997 3679999999999999999999999999999999999999999999998732
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.+++..||.+|+..... +. .........++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~---------------~~------------------------~~~~~~~~~~~ 121 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLE---------------LA------------------------GTPKAEIKARV 121 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHH
Confidence 259999999988888999999853210 00 00111223456
Q ss_pred HHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd 315 (692)
.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .++|||+||||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788889996 567889999999999999999999999999999999999999999999888753 48899999999
Q ss_pred HHHHHhhcCeEEEEecceEEEeccChH
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
++++..+||+|++|++|++. +.|...
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~-~~g~~~ 226 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLV-EQGTVS 226 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHH
Confidence 99999999999999999984 556543
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=354.14 Aligned_cols=208 Identities=26% Similarity=0.450 Sum_probs=175.1
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------------- 160 (692)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5999999999998889999999999999999999999999999999999999999999987631
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..++|++|++.+++..|+.+|+...... .. .........+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~ 124 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVI--------------VK------------------------GEPKEEATAR 124 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHH--------------hc------------------------CCCHHHHHHH
Confidence 2599999999887788999998531100 00 0001122345
Q ss_pred HHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecC
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd 315 (692)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|+ +.+.|||+||||
T Consensus 125 ~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 125 ARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 66788888986 45688899999999999999999999999999999999999999999988764 358899999999
Q ss_pred HHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
++++..+||+|+++++|++. +.|...++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 231 (250)
T PRK11264 204 MSFARDVADRAIFMDQGRIV-EQGPAKAL 231 (250)
T ss_pred HHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999974 56665443
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=346.37 Aligned_cols=197 Identities=29% Similarity=0.469 Sum_probs=168.8
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEcc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (692)
|+++|++|+|+++++|+|+||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998888999999999999 999999999999999999999999999999998743 35999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..||.+|+..... +. ..+......++.++++.+|+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAW---------------LK------------------------GIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred CCcccccCCHHHHHHHHHH---------------Hh------------------------CCCHHHHHHHHHHHHHHCCC
Confidence 9988778899999852110 00 00111223456677888888
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeE
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~d~i 326 (692)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||++
T Consensus 121 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 121 G-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred H-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 456888999999999999999999999999999999999999999999988864 2689999999999999999999
Q ss_pred EEEecceEE
Q 005532 327 VETEMGVSR 335 (692)
Q Consensus 327 ~~l~~G~~~ 335 (692)
+++++|++.
T Consensus 200 ~~l~~g~i~ 208 (211)
T cd03264 200 AVLNKGKLV 208 (211)
T ss_pred EEEECCEEE
Confidence 999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=347.34 Aligned_cols=191 Identities=31% Similarity=0.541 Sum_probs=164.6
Q ss_pred EEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------ceEEEEcccCc
Q 005532 100 LENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFE 171 (692)
Q Consensus 100 i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------~~i~~v~Q~~~ 171 (692)
++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|++|++.
T Consensus 2 ~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~ 81 (205)
T cd03226 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVD 81 (205)
T ss_pred cccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChh
Confidence 6899999987 789999999999999999999999999999999999999999999998754 26999999974
Q ss_pred c-CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCc
Q 005532 172 V-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (692)
Q Consensus 172 ~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (692)
. ++..|+.||+...... .. ....++.++++.+|+.
T Consensus 82 ~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~- 117 (205)
T cd03226 82 YQLFTDSVREELLLGLKE-----------------------------------------LD--AGNEQAETVLKDLDLY- 117 (205)
T ss_pred hhhhhccHHHHHhhhhhh-----------------------------------------cC--ccHHHHHHHHHHcCCc-
Confidence 2 3467999998521100 00 0123566788888986
Q ss_pred cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEE
Q 005532 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (692)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~i~ 327 (692)
+..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++..+||+|+
T Consensus 118 ~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~ 197 (205)
T cd03226 118 ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVL 197 (205)
T ss_pred hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 567889999999999999999999999999999999999999999999888753 48899999999999999999999
Q ss_pred EEecceE
Q 005532 328 ETEMGVS 334 (692)
Q Consensus 328 ~l~~G~~ 334 (692)
++++|++
T Consensus 198 ~l~~G~i 204 (205)
T cd03226 198 LLANGAI 204 (205)
T ss_pred EEECCEE
Confidence 9999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=412.85 Aligned_cols=329 Identities=23% Similarity=0.283 Sum_probs=230.5
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCC--CeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p--~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~ 317 (692)
|..+|+.....++++.+|||||+|||+||+||..+| ++|||||||+|||+..++.|.++|+ +.|.|||+||||++
T Consensus 460 L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~~ 539 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDEQ 539 (1809)
T ss_pred HHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH
Confidence 456788633368999999999999999999999999 8999999999999999999988764 46899999999999
Q ss_pred HHHhhcCeEEEEe------cceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHH
Q 005532 318 FLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKK 391 (692)
Q Consensus 318 ~l~~~~d~i~~l~------~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 391 (692)
+.++||+|++|. +|++ .+.|.+.++...... ....+... ..
T Consensus 540 -vi~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~---------------------l~~~~l~~----~~------ 586 (1809)
T PRK00635 540 -MISLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDS---------------------LTAKYLRQ----EL------ 586 (1809)
T ss_pred -HHHhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHH---------------------HHHHHhcC----cc------
Confidence 458999999996 5565 567776544221000 00000000 00
Q ss_pred HHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHH---
Q 005532 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK--- 468 (692)
Q Consensus 392 l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~--- 468 (692)
....+ .........|++++++. ..|+++||+|++|+++||+|+||||||||++
T Consensus 587 --------~~~~~-----------~~~~~~~~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L 642 (1809)
T PRK00635 587 --------TIPIP-----------EKRTNSLGTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTL 642 (1809)
T ss_pred --------cccCc-----------ccccCCCCeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHH
Confidence 00000 00001123688998863 3699999999999999999999999999999
Q ss_pred ------HHhcCCCCCe----eE----EEECCccc------------------e---------------eeeecccc----
Q 005532 469 ------LIMGLEKPRG----GE----VLLGEHNV------------------L---------------PNYFEQNQ---- 497 (692)
Q Consensus 469 ------~L~g~~~p~~----G~----i~~~~~~~------------------~---------------~~~~~q~~---- 497 (692)
.|.|...+.. +. |.++...+ + ...|..+.
T Consensus 643 ~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~ 722 (1809)
T PRK00635 643 VPAVEEFIEQGFCSNLSIQWGAISRLVHITRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGA 722 (1809)
T ss_pred HHHHHHHhcCCCcccccccccccceeEEecCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCC
Confidence 5666532211 11 11111100 0 00010000
Q ss_pred ---------------h------------------hhcCCCccHHHHHHHHhcc--------ccHHHHHHHHhhcCCCccc
Q 005532 498 ---------------A------------------EALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADM 536 (692)
Q Consensus 498 ---------------~------------------~~l~~~~tv~e~~~~~~~~--------~~~~~~~~~L~~~~l~~~~ 536 (692)
. .......|+.|++...... ........+|+.+|+....
T Consensus 723 C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l~ 802 (1809)
T PRK00635 723 CAECQGLGSITTTDNRTSIPCPSCLGKRFLPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLP 802 (1809)
T ss_pred CCcceeeEEEEEecCCceEECCccCCcccCHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcchh
Confidence 0 0112345677776543211 1111222578889995323
Q ss_pred ccccCCCCCHHHHHHHHHHHHhc---cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEE
Q 005532 537 LDRKVSLLSGGEKARLAFCKFMV---KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRV 610 (692)
Q Consensus 537 ~~~~~~~LSgGqkqrv~LAral~---~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i 610 (692)
.++++.+|||||+|||+||++|+ .+|+||||||||++||+.+++.|.++|.++ +.|||+||||++++ ++||+|
T Consensus 803 l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrV 881 (1809)
T PRK00635 803 LGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYV 881 (1809)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEE
Confidence 68999999999999999999997 699999999999999999999999998765 45999999999999 789999
Q ss_pred EEEE------CCEEEEecCChhHHHH
Q 005532 611 VEVK------GSNLQDYAGDYNYYLE 630 (692)
Q Consensus 611 ~~l~------~g~l~~~~g~~~~~~~ 630 (692)
++|. +|+++ ..|+.+++..
T Consensus 882 i~L~p~gg~~~G~iv-~~Gtpeel~~ 906 (1809)
T PRK00635 882 LELGPEGGNLGGYLL-ASCSPEELIH 906 (1809)
T ss_pred EEEccCCCCCCCEEE-EeCCHHHHHh
Confidence 9996 56776 4687777654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=350.30 Aligned_cols=205 Identities=28% Similarity=0.427 Sum_probs=173.4
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (692)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 468999999998889999999999999999999999999999999999999999999998632 249999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..|+++|+...... .. ........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~~------------------------~~~~~~~~~~~~~l~~~ 121 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEI---------------RG------------------------LSKKEREEKLEELLEEF 121 (232)
T ss_pred cCCccccccCcHHHHHHHHHHh---------------cC------------------------CCHHHHHHHHHHHHHHc
Confidence 9999887788999998532100 00 00011234566778888
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~~ 323 (692)
|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.+.|||++|||++++..+|
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 122 HIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred CCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 986 56788899999999999999999999999999999999999999999988764 35889999999999999999
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|+++++|++. +.|..++
T Consensus 201 d~i~~l~~G~i~-~~~~~~~ 219 (232)
T cd03218 201 DRAYIIYEGKVL-AEGTPEE 219 (232)
T ss_pred CEEEEEECCeEE-EEeCHHH
Confidence 999999999974 5666543
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-42 Score=351.43 Aligned_cols=207 Identities=24% Similarity=0.419 Sum_probs=175.8
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------ceEEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------~~i~~ 165 (692)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 789999999998889999999999999999999999999999999999999999999998732 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..||.+|+...... .. ..+......++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~~ 123 (240)
T PRK09493 82 VFQQFYLFPHLTALENVMFGPLR--------------VR------------------------GASKEEAEKQARELLAK 123 (240)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887888999998522100 00 00111223456678888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~ 322 (692)
+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|+ +.++|||+|||+++++..+
T Consensus 124 ~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 202 (240)
T PRK09493 124 VGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202 (240)
T ss_pred cCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 46688899999999999999999999999999999999999999999988774 3589999999999999999
Q ss_pred cCeEEEEecceEEEeccChHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+|+++++|++. +.|.+.++
T Consensus 203 ~d~i~~l~~G~i~-~~g~~~~~ 223 (240)
T PRK09493 203 ASRLIFIDKGRIA-EDGDPQVL 223 (240)
T ss_pred CCEEEEEECCEEE-eeCCHHHH
Confidence 9999999999984 66776554
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-42 Score=348.02 Aligned_cols=198 Identities=26% Similarity=0.465 Sum_probs=168.9
Q ss_pred EEEEeEEEEe-CCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ceE
Q 005532 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (692)
Q Consensus 98 l~i~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~i 163 (692)
|+++|+++.| +++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 7899999999 66789999999999999999999999999999999999999999999998742 258
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..|+.+|+..... .. ..+......++.+++
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l 122 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLI---------------IA------------------------GASGDDIRRRVSAAL 122 (222)
T ss_pred EEEecCccccccccHHHHHHhHHH---------------hc------------------------CCCHHHHHHHHHHHH
Confidence 999999988788999999853110 00 001112233456778
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~ 320 (692)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+ +.+.|||+||||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 123 DKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLIS 201 (222)
T ss_pred HHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888886 46788899999999999999999999999999999999999999999887765 34789999999999999
Q ss_pred hhcCeEEEEecceEE
Q 005532 321 QLCTKIVETEMGVSR 335 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~ 335 (692)
.+||+|+++++|++.
T Consensus 202 ~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 202 RRSYRMLTLSDGHLH 216 (222)
T ss_pred HhCCEEEEEECCEEc
Confidence 999999999999874
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=347.47 Aligned_cols=203 Identities=29% Similarity=0.447 Sum_probs=171.4
Q ss_pred EEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEE
Q 005532 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v 166 (692)
|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 568999999987 789999999999999999999999999999999999999999999998743 249999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..|+.+|+..... .. .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~ 121 (220)
T cd03263 81 PQFDALFDELTVREHLRFYAR---------------LK------------------------GLPKSEIKEEVELLLRVL 121 (220)
T ss_pred cCcCCccccCCHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHc
Confidence 999988778899999742110 00 001111234566778888
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcC
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~d 324 (692)
|+. +..++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++..+||
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 122 GLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 886 566888999999999999999999999999999999999999999999988753 35899999999999999999
Q ss_pred eEEEEecceEEEeccCh
Q 005532 325 KIVETEMGVSRTYEGNY 341 (692)
Q Consensus 325 ~i~~l~~G~~~~~~G~y 341 (692)
+++++++|++. ..|..
T Consensus 201 ~i~~l~~g~i~-~~~~~ 216 (220)
T cd03263 201 RIAIMSDGKLR-CIGSP 216 (220)
T ss_pred EEEEEECCEEE-ecCCH
Confidence 99999999974 44543
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=355.11 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----ceEEEEcccCc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~ 171 (692)
+|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 3889999999988889999999999999999999999999999999999999999999998743 25899999998
Q ss_pred cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcc
Q 005532 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (692)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (692)
+++..||.+|+..... .. .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~ 120 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQ---------------LA------------------------GVEKMQRLEIAHQMLKKVGLE-G 120 (255)
T ss_pred cCCCCcHHHHHHhHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 8777899999853210 00 001111234567888899996 4
Q ss_pred ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEE
Q 005532 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIV 327 (692)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~i~ 327 (692)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .++|||+||||++++..+||+|+
T Consensus 121 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 66888999999999999999999999999999999999999999999887753 38899999999999999999999
Q ss_pred EEe--cceEE
Q 005532 328 ETE--MGVSR 335 (692)
Q Consensus 328 ~l~--~G~~~ 335 (692)
+++ +|++.
T Consensus 201 ~l~~~~G~i~ 210 (255)
T PRK11248 201 LLSPGPGRVV 210 (255)
T ss_pred EEeCCCcEEE
Confidence 998 48763
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=355.26 Aligned_cols=198 Identities=24% Similarity=0.398 Sum_probs=171.4
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----ceEEEEcccC
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~ 170 (692)
+.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|++
T Consensus 11 ~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~ 90 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDA 90 (257)
T ss_pred CcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCc
Confidence 45999999999998889999999999999999999999999999999999999999999987643 3699999999
Q ss_pred ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCc
Q 005532 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (692)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (692)
.+++..||.||+...+.. ....++.++++.+|+.
T Consensus 91 ~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~l~~~gl~- 124 (257)
T PRK11247 91 RLLPWKKVIDNVGLGLKG---------------------------------------------QWRDAALQALAAVGLA- 124 (257)
T ss_pred cCCCCCcHHHHHHhcccc---------------------------------------------hHHHHHHHHHHHcCCh-
Confidence 887778999998532100 0123455677888886
Q ss_pred cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeE
Q 005532 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKI 326 (692)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~i 326 (692)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .++|||+||||++++..+||+|
T Consensus 125 ~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i 204 (257)
T PRK11247 125 DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRV 204 (257)
T ss_pred hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEE
Confidence 466888999999999999999999999999999999999999999999887743 4899999999999999999999
Q ss_pred EEEecceEEEeccC
Q 005532 327 VETEMGVSRTYEGN 340 (692)
Q Consensus 327 ~~l~~G~~~~~~G~ 340 (692)
+++++|++. +.|.
T Consensus 205 ~~l~~G~i~-~~~~ 217 (257)
T PRK11247 205 LLIEEGKIG-LDLT 217 (257)
T ss_pred EEEECCEEE-eecc
Confidence 999999974 3443
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=350.37 Aligned_cols=204 Identities=32% Similarity=0.534 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCe----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------
Q 005532 98 VKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (692)
Q Consensus 98 l~i~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------- 160 (692)
|+++|++++|+++ ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 7899999999876 89999999999999999999999999999999999999999999998642
Q ss_pred ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHH
Q 005532 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
..|+|++|++.+++..|+.+|+...+.. . ..........+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~ 122 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEI---------------A------------------------GVPKAEIEERVL 122 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHH
Confidence 2599999999887788999998532100 0 000111234566
Q ss_pred HHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 005532 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (692)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~ 316 (692)
++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||++
T Consensus 123 ~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 123 ELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 788888986 567888999999999999999999999999999999999999999999887753 388999999999
Q ss_pred HHHHhhcCeEEEEecceEEEeccChH
Q 005532 317 AFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
+++..+||+++++++|++. ..|...
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~ 226 (233)
T cd03258 202 EVVKRICDRVAVMEKGEVV-EEGTVE 226 (233)
T ss_pred HHHHHhCCEEEEEECCEEE-EecCHH
Confidence 9999999999999999984 556543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=346.17 Aligned_cols=196 Identities=28% Similarity=0.450 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ceE
Q 005532 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (692)
Q Consensus 98 l~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~i 163 (692)
|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999975 579999999999999999999999999999999999999999999998642 259
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..|+.+|+...... . .........++.+++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEV---------------T------------------------GVPPREIRKRVPAAL 121 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999887888999998532100 0 000112234566788
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~ 320 (692)
+.+|+. ...++++.+||||||||++|||||+.+|+||||||||++||+.+++++.+.|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 888886 466888999999999999999999999999999999999999999999887753 4799999999999999
Q ss_pred hhcCeEEEEecce
Q 005532 321 QLCTKIVETEMGV 333 (692)
Q Consensus 321 ~~~d~i~~l~~G~ 333 (692)
.+||+|+++++|+
T Consensus 201 ~~~d~i~~l~~G~ 213 (214)
T cd03292 201 TTRHRVIALERGK 213 (214)
T ss_pred HhCCEEEEEeCCc
Confidence 9999999999886
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=344.51 Aligned_cols=194 Identities=32% Similarity=0.477 Sum_probs=168.7
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc--------eEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~--------~i~~v~Q~ 169 (692)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4689999999888999999999999999999999999999999999999999999999987542 59999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+.||+...... .. .-..++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (208)
T cd03268 81 PGFYPNLTARENLRLLARL-----------------------------------------LG--IRKKRIDEVLDVVGLK 117 (208)
T ss_pred CccCccCcHHHHHHHHHHh-----------------------------------------cC--CcHHHHHHHHHHcCCH
Confidence 9887889999998532100 00 0023455677888885
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~i 326 (692)
...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 118 -DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred -HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 466888999999999999999999999999999999999999999999887753 5889999999999999999999
Q ss_pred EEEecceEE
Q 005532 327 VETEMGVSR 335 (692)
Q Consensus 327 ~~l~~G~~~ 335 (692)
+++++|++.
T Consensus 197 ~~l~~g~i~ 205 (208)
T cd03268 197 GIINKGKLI 205 (208)
T ss_pred EEEECCEEE
Confidence 999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=361.44 Aligned_cols=205 Identities=30% Similarity=0.481 Sum_probs=181.0
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeec
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~ 494 (692)
..|+++||++.||+..+++++||+|..||+++|+||||||||||||+|+|+.+|++|+|.++|.++. +++++
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 3589999999998765999999999999999999999999999999999999999999999998763 35667
Q ss_pred ccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEe
Q 005532 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLD 568 (692)
|+ +.+.|.+||++|+.+..... ...++.+.++.+++ .+.+++++.+|||||||||+|||||+++|+++|||
T Consensus 82 Q~--yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l-~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~D 158 (338)
T COG3839 82 QN--YALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGL-EHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLD 158 (338)
T ss_pred CC--ccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCC-hhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEec
Confidence 65 57899999999998865422 13468889999999 47899999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 569 EPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 569 EPTn~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||+++||...+..+...|++ ++.|+|+||||..++..++|||++|++|++..+..+-+-|.+
T Consensus 159 EPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~ 224 (338)
T COG3839 159 EPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYER 224 (338)
T ss_pred CchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhC
Confidence 99999999999887777664 467999999999999999999999999999987666666643
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=361.43 Aligned_cols=208 Identities=22% Similarity=0.342 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCe-----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
.|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999753 59999999999999999999999999999999999999999999986421
Q ss_pred -----------------------ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 005532 161 -----------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216 (692)
Q Consensus 161 -----------------------~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 216 (692)
..|||++|+|. .++..||.+|+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~---------------------------- 133 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS---------------------------- 133 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH----------------------------
Confidence 24899999873 33457999998522100
Q ss_pred HHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHH
Q 005532 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE 296 (692)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~ 296 (692)
...+.....+++.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++.
T Consensus 134 -----------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 134 -----------MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 001112334567788999999655789999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 297 WLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 297 ~L~~~L~---~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
++.++|+ +.|.|||+||||++++..+||+|++|++|++. +.|...++
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i~-~~g~~~~~ 252 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKII-KDGDTYDI 252 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 9988764 35899999999999999999999999999974 56665443
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-42 Score=360.51 Aligned_cols=208 Identities=22% Similarity=0.324 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
.|+++|++|+|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999974 469999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHH
Q 005532 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (692)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (692)
..|+||+|+|. .++..||.+|+...... ...+.....
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~ 122 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMN---------------------------------------FGVSEEDAK 122 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 25999999973 23457999998522100 001111233
Q ss_pred HHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 005532 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (692)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~v 312 (692)
+++.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviii 202 (290)
T PRK13634 123 QKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLV 202 (290)
T ss_pred HHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 46778889999964567899999999999999999999999999999999999999999999887743 48999999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|||++++..+||+|++|++|++ .+.|...++
T Consensus 203 tHd~~~~~~~~drv~~l~~G~i-~~~g~~~~~ 233 (290)
T PRK13634 203 THSMEDAARYADQIVVMHKGTV-FLQGTPREI 233 (290)
T ss_pred eCCHHHHHHhCCEEEEEECCEE-EEECCHHHH
Confidence 9999999999999999999998 466776544
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-42 Score=345.99 Aligned_cols=197 Identities=29% Similarity=0.493 Sum_probs=168.1
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------ceEEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------~~i~~ 165 (692)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 468999999998889999999999999999999999999999999999999999999998742 24999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..|+.||+...... .. ..+......++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIK--------------VK------------------------GMSKAEAEERALELLEK 122 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887788999998532100 00 00011123455677888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~ 322 (692)
+|+. ...++++.+|||||+|||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++||+++++..+
T Consensus 123 ~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 8886 467889999999999999999999999999999999999999999999888753 578999999999999999
Q ss_pred cCeEEEEecce
Q 005532 323 CTKIVETEMGV 333 (692)
Q Consensus 323 ~d~i~~l~~G~ 333 (692)
||+|+++++|+
T Consensus 202 ~d~i~~l~~g~ 212 (213)
T cd03262 202 ADRVIFMDDGR 212 (213)
T ss_pred CCEEEEEeCCc
Confidence 99999999886
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=346.07 Aligned_cols=194 Identities=32% Similarity=0.477 Sum_probs=164.1
Q ss_pred EEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEEc
Q 005532 100 LENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLS 167 (692)
Q Consensus 100 i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v~ 167 (692)
++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|++
T Consensus 2 ~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (211)
T cd03225 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVF 81 (211)
T ss_pred ceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEe
Confidence 6899999987 789999999999999999999999999999999999999999999998742 2589999
Q ss_pred ccCcc-CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 168 QEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 168 Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
|++.. ++..|+.+|+...... . .........++.++++.+
T Consensus 82 q~~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 122 (211)
T cd03225 82 QNPDDQFFGPTVEEEVAFGLEN---------------L------------------------GLPEEEIEERVEEALELV 122 (211)
T ss_pred cChhhhcCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 99753 5678999998532100 0 000111234566778888
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~ 323 (692)
|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||+||||++++..+|
T Consensus 123 ~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~ 201 (211)
T cd03225 123 GLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELA 201 (211)
T ss_pred CcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhC
Confidence 986 567888999999999999999999999999999999999999999999888743 4789999999999999999
Q ss_pred CeEEEEecce
Q 005532 324 TKIVETEMGV 333 (692)
Q Consensus 324 d~i~~l~~G~ 333 (692)
|+|+++++|+
T Consensus 202 d~i~~l~~G~ 211 (211)
T cd03225 202 DRVIVLEDGK 211 (211)
T ss_pred CEEEEEeCCC
Confidence 9999998874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=350.04 Aligned_cols=208 Identities=26% Similarity=0.414 Sum_probs=176.2
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------------- 160 (692)
.|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4899999999998889999999999999999999999999999999999999999999998742
Q ss_pred ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHH
Q 005532 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
..|+|++|++.+++..|+.+|+...... .. .........++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~--------------~~------------------------~~~~~~~~~~~~ 123 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCR--------------VL------------------------GLSKDQALARAE 123 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHH
Confidence 1599999999887888999998521100 00 000011234566
Q ss_pred HHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH
Q 005532 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (692)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~ 317 (692)
++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .++|||+||||++
T Consensus 124 ~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 124 KLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 778888986 567888999999999999999999999999999999999999999999887753 5899999999999
Q ss_pred HHHhhcCeEEEEecceEEEeccChHHH
Q 005532 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
++..+||+++++++|++. +.|.+.++
T Consensus 203 ~~~~~~d~i~~l~~g~i~-~~~~~~~~ 228 (242)
T PRK11124 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999984 66776543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=371.84 Aligned_cols=212 Identities=30% Similarity=0.401 Sum_probs=178.8
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
++|+++|++++|+++++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.. .+|||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 36999999999999999999999999999999999999999999999999999999999998742 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.++++.||+||+........ ..+. .......+++.++++.
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~----------~~~~-------------------------~~~~~~~~~v~~~le~ 126 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHR----------SRFD-------------------------TWTETDRAAVERAMER 126 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhc----------cccc-------------------------CCCHHHHHHHHHHHHH
Confidence 9999988889999999853210000 0000 0001123567788999
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~ 322 (692)
+|+. +..++++.+|||||||||+|||||+++|+||||||||+|||+.++..+.++|+ +.++|||++|||++++.++
T Consensus 127 vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~ 205 (402)
T PRK09536 127 TGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARY 205 (402)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 9996 67789999999999999999999999999999999999999999998887764 3588999999999999999
Q ss_pred cCeEEEEecceEEEeccChHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+++++++|++. +.|...++
T Consensus 206 adrii~l~~G~iv-~~G~~~ev 226 (402)
T PRK09536 206 CDELVLLADGRVR-AAGPPADV 226 (402)
T ss_pred CCEEEEEECCEEE-EecCHHHH
Confidence 9999999999984 56776443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=350.45 Aligned_cols=205 Identities=28% Similarity=0.414 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEE
Q 005532 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v 166 (692)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999988 789999999999999999999999999999999999999999999998742 258999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..|+.+|+..... +. ..+......++.++++.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~l 121 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPK---------------LL------------------------KWPKEKIRERADELLALV 121 (242)
T ss_pred ccCccccCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHc
Confidence 999988778999999852100 00 001112234566788889
Q ss_pred CCCc-cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 005532 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~ 321 (692)
|+.+ ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+|||+++++..
T Consensus 122 ~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9864 367888999999999999999999999999999999999999999999887753 38899999999999999
Q ss_pred hcCeEEEEecceEEEeccChH
Q 005532 322 LCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~ 342 (692)
+||+|+++++|++. +.|...
T Consensus 202 ~~d~i~~l~~G~i~-~~~~~~ 221 (242)
T cd03295 202 LADRIAIMKNGEIV-QVGTPD 221 (242)
T ss_pred hCCEEEEEECCEEE-EecCHH
Confidence 99999999999984 456543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=352.11 Aligned_cols=213 Identities=27% Similarity=0.441 Sum_probs=174.5
Q ss_pred EEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ceE
Q 005532 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (692)
Q Consensus 98 l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~i 163 (692)
|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 78999999998 7789999999999999999999999999999999999999999999998742 249
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..||.+|+.......... . ..+ . .........++.+++
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~------~-~~~-------------~-----------~~~~~~~~~~~~~~l 130 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPT------W-RSL-------------L-----------GRFSEEDKERALSAL 130 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccc------h-hhh-------------h-----------ccccHHHHHHHHHHH
Confidence 99999998878889999985321100000 0 000 0 000011234567788
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l 319 (692)
+.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .++|||+||||++++
T Consensus 131 ~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 131 ERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLA 209 (243)
T ss_pred HHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 888986 567888999999999999999999999999999999999999999999887753 378999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHH
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.++||+++++++|++. +.|...+
T Consensus 210 ~~~~d~v~~l~~G~i~-~~~~~~~ 232 (243)
T TIGR02315 210 KKYADRIVGLKAGEIV-FDGAPSE 232 (243)
T ss_pred HHhcCeEEEEECCEEE-ecCCHHH
Confidence 9999999999999974 5676543
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=390.64 Aligned_cols=210 Identities=32% Similarity=0.572 Sum_probs=175.3
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhcC
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~ 502 (692)
.+|+++||+++|+++.+|+|+||+|++|+++||+|||||||||||++|+|+++|++|+|.+++ ....+++.|... ..
T Consensus 2 ~~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~--~~ 78 (635)
T PRK11147 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPP--RN 78 (635)
T ss_pred cEEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCC--CC
Confidence 369999999999988999999999999999999999999999999999999999999999976 333445444311 11
Q ss_pred CCccHHHHH------------------------------HHHh---------cccc-HHHHHHHHhhcCCCcccccccCC
Q 005532 503 LDKTVLETV------------------------------AEAA---------EDWR-IDDIKGLLGRCNFKADMLDRKVS 542 (692)
Q Consensus 503 ~~~tv~e~~------------------------------~~~~---------~~~~-~~~~~~~L~~~~l~~~~~~~~~~ 542 (692)
...++.+++ .... ..+. ...+..+|..+||. .++++.
T Consensus 79 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~ 155 (635)
T PRK11147 79 VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAALS 155 (635)
T ss_pred CCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCchh
Confidence 112222221 1000 0111 23577889999995 378999
Q ss_pred CCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEec
Q 005532 543 LLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (692)
Q Consensus 543 ~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~ 622 (692)
+|||||||||+|||+|+.+|+||||||||||||+.+++||.++|.++++|||+||||++++..+||+|++|++|+++.|.
T Consensus 156 ~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~~~ 235 (635)
T PRK11147 156 SLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSYP 235 (635)
T ss_pred hcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999899999999999999999999999999999999
Q ss_pred CChhHHHHHhHHHHHH
Q 005532 623 GDYNYYLEKNLDAREK 638 (692)
Q Consensus 623 g~~~~~~~~~~~~~~~ 638 (692)
|+|+.|..+++++.+.
T Consensus 236 g~~~~~~~~~~~~~~~ 251 (635)
T PRK11147 236 GNYDQYLLEKEEALRV 251 (635)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999887765433
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=347.92 Aligned_cols=205 Identities=23% Similarity=0.387 Sum_probs=172.3
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (692)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 3789999999998889999999999999999999999999999999999999999999998743 2599999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++..|+.+|+..... .. ..........+.++++.+|
T Consensus 81 q~~~~~~~~t~~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~g 121 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAA---------------LH------------------------GLSRAEARERIAALLARLG 121 (236)
T ss_pred CCCCCcccCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHHHHHHHHcC
Confidence 99888788899999742110 00 0001112335567788889
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~ 323 (692)
+. ...++++.+||||||||++|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+|||+++++.. |
T Consensus 122 l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~ 199 (236)
T TIGR03864 122 LA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D 199 (236)
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C
Confidence 86 467888999999999999999999999999999999999999999999887743 47899999999999975 9
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|+++++|++. ..|..++
T Consensus 200 d~i~~l~~G~i~-~~~~~~~ 218 (236)
T TIGR03864 200 DRLVVLHRGRVL-ADGAAAE 218 (236)
T ss_pred CEEEEEeCCeEE-EeCCHHH
Confidence 999999999984 5566543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=345.33 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=166.1
Q ss_pred EEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------
Q 005532 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (692)
Q Consensus 98 l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------- 160 (692)
|+++|++++|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 789999999974 469999999999999999999999999999999999999999999998632
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.+++..|++||+..... +. ..+......++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~ 122 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKSVKEAKERA 122 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHH
Confidence 359999999888778899999853110 00 00011123455
Q ss_pred HHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd 315 (692)
.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .+.|||+||||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 6788888996 567888999999999999999999999999999999999999999999887752 47899999999
Q ss_pred HHHHHhhcCeEEEEecceE
Q 005532 316 RAFLDQLCTKIVETEMGVS 334 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~ 334 (692)
++++.. ||+|+++++|++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHHHhh-cCEEEEEeCCEe
Confidence 999965 799999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=350.44 Aligned_cols=213 Identities=26% Similarity=0.430 Sum_probs=174.2
Q ss_pred EEEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------ceE
Q 005532 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (692)
Q Consensus 98 l~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------~~i 163 (692)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999987 789999999999999999999999999999999999999999999998732 249
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..||.+|+.......... . ..+. .........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~------~-~~~~------------------------~~~~~~~~~~~~~~l 129 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRST------W-RSLF------------------------GLFPKEEKQRALAAL 129 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchh------h-hhhc------------------------ccCcHHHHHHHHHHH
Confidence 99999998878889999985321100000 0 0000 000011234566788
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l 319 (692)
+.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|++ .++|||+||||++++
T Consensus 130 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 130 ERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 888986 567888999999999999999999999999999999999999999999887753 489999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHH
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
..+||+|+++++|++. +.|.+.+
T Consensus 209 ~~~~d~v~~l~~G~i~-~~~~~~~ 231 (241)
T cd03256 209 REYADRIVGLKDGRIV-FDGPPAE 231 (241)
T ss_pred HHhCCEEEEEECCEEE-eecCHHH
Confidence 9999999999999974 5576544
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=350.19 Aligned_cols=208 Identities=26% Similarity=0.432 Sum_probs=175.1
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (692)
+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5999999999998889999999999999999999999999999999999999999999998732 35999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..|+.||+..... +.. ..+......++.++++.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~---------------~~~-----------------------~~~~~~~~~~~~~~l~~ 124 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQ---------------IRD-----------------------DLSAEQREDRANELMEE 124 (241)
T ss_pred eccCCcccccCcHHHHHhhhhh---------------ccc-----------------------ccCHHHHHHHHHHHHHH
Confidence 9999988778899999853210 000 00011123456677888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~ 322 (692)
+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.++|+ +.+.|||++||+++++..+
T Consensus 125 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 125 FHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred cCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 8886 45688899999999999999999999999999999999999999998877664 4689999999999999999
Q ss_pred cCeEEEEecceEEEeccChHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+|+++++|++. +.|.+.++
T Consensus 204 ~d~v~~l~~G~i~-~~~~~~~~ 224 (241)
T PRK10895 204 CERAYIVSQGHLI-AHGTPTEI 224 (241)
T ss_pred cCEEEEEeCCeEE-eeCCHHHH
Confidence 9999999999974 56776544
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=358.02 Aligned_cols=208 Identities=24% Similarity=0.418 Sum_probs=173.9
Q ss_pred cEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
.|+++|++|.|++ +++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4899999999975 469999999999999999999999999999999999999999999998732
Q ss_pred -ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 -MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 -~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|||++|+|. .++..||.+|+...... ..+.......+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~ 122 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPIN---------------------------------------LGLSEEEIENR 122 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHH---------------------------------------CCCCHHHHHHH
Confidence 25899999974 23467999998521100 00112233456
Q ss_pred HHHHhhhcCCCc-cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 005532 239 VSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~-~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vs 313 (692)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+||
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 778899999962 467899999999999999999999999999999999999999999999887742 489999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||++++..+||+|+++++|++. ..|...++
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~-~~g~~~~~ 232 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCE-LQGTPREV 232 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 9999999999999999999984 56765544
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=347.78 Aligned_cols=201 Identities=30% Similarity=0.414 Sum_probs=173.0
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------ee
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PN 491 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------------~~ 491 (692)
|+++|+++.|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 47899999999888999999999999999999999999999999999999999999999886531 34
Q ss_pred eecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
|++|. ..+.+..|+.+|+...... .. ...+..+++.+++. ...++++.+|||||||||+|||||+.+|+|
T Consensus 81 ~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~l 157 (235)
T cd03261 81 MLFQS--GALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALARALALDPEL 157 (235)
T ss_pred EEccC--cccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 56654 3456678999998754211 11 23467889999995 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++. +.|+.+++.
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 225 (235)
T cd03261 158 LLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIV-AEGTPEELR 225 (235)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEE-EecCHHHHc
Confidence 9999999999999999999999864 469999999999999999999999999997 457766553
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=357.49 Aligned_cols=209 Identities=22% Similarity=0.294 Sum_probs=174.1
Q ss_pred cEEEEeEEEEeCCe-----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
+|+++|++|+|+.. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 38899999999742 59999999999999999999999999999999999999999999998743
Q ss_pred ---ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHH
Q 005532 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (692)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (692)
..|+|++|+|. .++..||.+|+...... ...+.....
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~ 121 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGIPKEKAE 121 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHH---------------------------------------cCCCHHHHH
Confidence 14899999972 23456999998522100 001112234
Q ss_pred HHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 005532 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (692)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vs 313 (692)
.++.++++.+|+.+...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|+ +.+.|||+||
T Consensus 122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5677888889986456789999999999999999999999999999999999999999999988764 3589999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHHHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
||++++..+||+|++|++|++ .+.|...++.
T Consensus 202 Hd~~~~~~~~dri~~l~~G~i-~~~g~~~~~~ 232 (288)
T PRK13643 202 HLMDDVADYADYVYLLEKGHI-ISCGTPSDVF 232 (288)
T ss_pred cCHHHHHHhCCEEEEEECCEE-EEECCHHHHH
Confidence 999999999999999999998 4678765543
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=345.10 Aligned_cols=192 Identities=27% Similarity=0.425 Sum_probs=166.9
Q ss_pred eEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------
Q 005532 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------ 489 (692)
+|+++|+++.|++ +++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4889999999964 47999999999999999999999999999999999999999999999986541
Q ss_pred -eeeecccchhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCC
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p 562 (692)
.+|++|+ ..+.+..|+.+|+...... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|
T Consensus 81 ~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p 157 (216)
T TIGR00960 81 HIGMVFQD--HRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKP 157 (216)
T ss_pred hceEEecC--ccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 3466664 3456678999998754211 1124578899999995 5678899999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 563 ~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
+||||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 158 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 158 PLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999876 46999999999999999999999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-42 Score=348.00 Aligned_cols=202 Identities=28% Similarity=0.412 Sum_probs=177.6
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCc---cc--------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV--------LPNY 492 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~---~~--------~~~~ 492 (692)
+|+++++++.|+...+++|||++|+.||.+||.|||||||||||++|+|++.|++|.|.++|. +. .+++
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 488999999999999999999999999999999999999999999999999999999999987 33 3567
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc--------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED--------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~--------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+.|+ +.+++.+||.+||.++... ....++.++|+.+.+. ...+++|.+|||||||||+|||||+..|++
T Consensus 82 vFQ~--YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALARALA~eP~v 158 (345)
T COG1118 82 VFQH--YALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALARALAVEPKV 158 (345)
T ss_pred EEec--hhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHHHHhhcCCCe
Confidence 7776 4588999999999987521 1124578889999994 788999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||||||+++||..-+..|..+|++ ++.|+|+||||.+++.++||||++|++|+|....-+.+-|
T Consensus 159 LLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~ 226 (345)
T COG1118 159 LLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226 (345)
T ss_pred EeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHh
Confidence 999999999999998877777664 5779999999999999999999999999998764444444
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=332.15 Aligned_cols=205 Identities=20% Similarity=0.303 Sum_probs=163.6
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCc-----cEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~-----G~I~~~~~~--------- 160 (692)
.+.++++|+++.|+++.+|+|||+.|++++++|||||+||||||||++|..+..... |+|.++|.+
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 346999999999999999999999999999999999999999999999999887654 999998754
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
.+||+|+|.|..++ +||+||+..+..- .-.. + ..+++
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~--~g~~------------------------------------~-~~lde 124 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRL--HGIK------------------------------------D-KELDE 124 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHh--hccc------------------------------------h-HHHHH
Confidence 26999999998866 9999999744321 0000 0 01111
Q ss_pred HHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
.+++.|+...|. .+.+++....||||||||++|||||+.+|+|||||||||+|||.+...+++++.+ ...|||+|
T Consensus 125 iVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV 204 (253)
T COG1117 125 IVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV 204 (253)
T ss_pred HHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence 222222222221 1345566788999999999999999999999999999999999997777766543 57899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEecc
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEG 339 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G 339 (692)
||.+.-+.+++|+++.+..|.+..|.-
T Consensus 205 THnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 205 THNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred eCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 999999999999999999999977643
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=346.48 Aligned_cols=199 Identities=24% Similarity=0.453 Sum_probs=168.4
Q ss_pred CcEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
++|+++|++|.|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 35999999999974 479999999999999999999999999999999999999999999998732
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.+++..|+++|+..... +. .........
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~ 124 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKKPAEINS 124 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 359999999988778899999853210 00 001112234
Q ss_pred HHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 005532 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (692)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vs 313 (692)
++.++++.+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .|+|||+||
T Consensus 125 ~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 125 RALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 567788889996 466888999999999999999999999999999999999999999999887753 478999999
Q ss_pred cCHHHHHhhcCeEEEEecceEE
Q 005532 314 HDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~ 335 (692)
||++++..+ ++++++++|++.
T Consensus 204 H~~~~~~~~-~~~~~l~~G~i~ 224 (233)
T PRK11629 204 HDLQLAKRM-SRQLEMRDGRLT 224 (233)
T ss_pred CCHHHHHhh-CEEEEEECCEEE
Confidence 999999875 699999999873
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=343.16 Aligned_cols=193 Identities=33% Similarity=0.489 Sum_probs=168.9
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 47899999998888999999999999999999999999999999999999999999999886542 3566665
Q ss_pred chhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
. .+.+..|+.+|+...... .....+.++++.+++. ...++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEP 157 (213)
T cd03259 81 Y--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEP 157 (213)
T ss_pred h--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3 455678999998754221 1123577899999995 567889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|++||+.++.++.+.|.++ +.|||+||||++++.++||+|++|++|++..
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 158 LSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 9999999999999999864 4599999999999999999999999999874
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=334.66 Aligned_cols=202 Identities=29% Similarity=0.419 Sum_probs=178.4
Q ss_pred ceEEEEeEEEEc-CCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------
Q 005532 423 SVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (692)
Q Consensus 423 ~~l~~~~l~~~y-~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------ 489 (692)
.+|+++||++.| +++.+|++|||+|++||+|+|||++|||||||||+|.|+.+|++|+|.++|.++.
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 479999999999 6788999999999999999999999999999999999999999999999986652
Q ss_pred -eeeecccchhhcCCCccHHHHHHHHhc-----------ccc---HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHH
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-----------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~~~~~~~-----------~~~---~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~L 554 (692)
.++++|. +++.+..+|++|++...- .+. ...+...|+++|+. +...++.++|||||||||+|
T Consensus 82 ~iGmIfQ~--~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQ--FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEecc--CCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 3566654 578899999999986531 111 23477899999995 67888999999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||||+++|+|+|.|||+++|||.+.+.+++.|++. +.|||+..|+++++.++||||+-|++|+++ |.|+-++.
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~iv-fDg~~~el 235 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPASEL 235 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEE-EeCChhhh
Confidence 99999999999999999999999999999998754 569999999999999999999999999998 78887663
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=355.33 Aligned_cols=205 Identities=26% Similarity=0.388 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
+|+++|++|.|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 699999999996 4679999999999999999999999999999999999999999999998742 25999
Q ss_pred EcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 166 LSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 166 v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
++|+|. .++..||.+|+...... ...+......++.++++
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~ 124 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVN---------------------------------------MGLDKDEVERRVEEALK 124 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999973 34567999998522100 00111123345677888
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~ 321 (692)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++.+
T Consensus 125 ~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 125 AVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 89996 567899999999999999999999999999999999999999999999887743 48999999999999999
Q ss_pred hcCeEEEEecceEEEeccChH
Q 005532 322 LCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~ 342 (692)
+||+|+++++|++. +.|...
T Consensus 204 ~~d~i~~l~~G~i~-~~g~~~ 223 (274)
T PRK13647 204 WADQVIVLKEGRVL-AEGDKS 223 (274)
T ss_pred hCCEEEEEECCEEE-EECCHH
Confidence 99999999999984 556653
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=345.10 Aligned_cols=199 Identities=27% Similarity=0.406 Sum_probs=168.6
Q ss_pred CcEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
++|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 46999999999975 359999999999999999999999999999999999999999999998632
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.+++..|+.+|+..... .. ........+
T Consensus 85 ~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~ 125 (228)
T PRK10584 85 LRAKHVGFVFQSFMLIPTLNALENVELPAL---------------LR------------------------GESSRQSRN 125 (228)
T ss_pred HHhheEEEEEcccccCCCcCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 259999999988778899999853110 00 000112234
Q ss_pred HHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEe
Q 005532 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIIS 313 (692)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vs 313 (692)
++.++++.+|+. +..++++.+||||||||++|||||+.+|+||||||||+|||+.+++++.++|+ +.+.|||+||
T Consensus 126 ~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 204 (228)
T PRK10584 126 GAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVT 204 (228)
T ss_pred HHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567788889986 56688899999999999999999999999999999999999999999988874 3488999999
Q ss_pred cCHHHHHhhcCeEEEEecceEE
Q 005532 314 HDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~ 335 (692)
||++++.. ||+++++++|++.
T Consensus 205 H~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 205 HDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred cCHHHHHh-CCEEEEEECCEEE
Confidence 99999865 9999999999873
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=356.68 Aligned_cols=208 Identities=22% Similarity=0.320 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
.|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999974 469999999999999999999999999999999999999999999998742
Q ss_pred ---ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHH
Q 005532 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (692)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (692)
..|+|++|++. .++..||.+|+...... . ........
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~ 122 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN---------------F------------------------GFSEDEAK 122 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH---------------c------------------------CCCHHHHH
Confidence 25999999973 23457999998521100 0 01111233
Q ss_pred HHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEe
Q 005532 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (692)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vs 313 (692)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4567888899996456789999999999999999999999999999999999999999999988775 3588999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||++++..+||+|+++++|++ .+.|...++
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~ 232 (287)
T PRK13641 203 HNMDDVAEYADDVLVLEHGKL-IKHASPKEI 232 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHH
Confidence 999999999999999999997 456665443
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=358.42 Aligned_cols=205 Identities=28% Similarity=0.428 Sum_probs=179.5
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eee
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNY 492 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~ 492 (692)
..+|+++||+++|++..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 35799999999999889999999999999999999999999999999999999999999999987642 467
Q ss_pred ecccchhhcCCCccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
++|. ..+++..|+.+|+......+ . ...+.++++.+++. ...++++..|||||||||+||+||+.+|++||
T Consensus 85 v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lll 161 (306)
T PRK13537 85 VPQF--DNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLV 161 (306)
T ss_pred Eecc--CcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 7765 35667899999987543211 1 13466889999995 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||+|||+.++..+.+.|+++ +.|||++||+++++.++||||++|++|++. +.|+.+++..
T Consensus 162 LDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 227 (306)
T PRK13537 162 LDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKI-AEGAPHALIE 227 (306)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999876 459999999999999999999999999997 4688777654
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=344.52 Aligned_cols=205 Identities=35% Similarity=0.506 Sum_probs=180.2
Q ss_pred ceEEEEeEEEEcCCe-ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------e
Q 005532 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~-~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~ 490 (692)
++++++++++.|++. .+|+++||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.++. .
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999875 8999999999999999999999999999999999999999999999987643 5
Q ss_pred eeecccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+++.|+++..+ ...||.+++.+..... ....+.++|..+|+. +..++++.+|||||||||+||.+|+.+|++
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA~vLa~~P~i 159 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVLAMGPEI 159 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhhHHHHcCCCE
Confidence 78899876555 6789999998764321 124578899999995 568999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||||++||+.+++.+.+.++++ +.|||+||||++++..+|||+++|++|++. +.|...++..
T Consensus 160 liLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~-~~g~p~~i~~ 228 (235)
T COG1122 160 LLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKIL-ADGDPAEIFN 228 (235)
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEe-ecCCHHHHhh
Confidence 9999999999999999999999876 349999999999999999999999999997 4676444433
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=360.94 Aligned_cols=198 Identities=29% Similarity=0.457 Sum_probs=168.5
Q ss_pred EEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEcccCccCCC
Q 005532 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQEFEVSMS 175 (692)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~Q~~~~~~~ 175 (692)
|+|+++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 46888889999999999999999999999999999999999999999999998743 259999999988888
Q ss_pred CCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcccccc
Q 005532 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (692)
Q Consensus 176 ~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~ 255 (692)
.||+||+..... +. .........++.++++.+|+. ...++
T Consensus 81 ~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~ 120 (302)
T TIGR01188 81 LTGRENLEMMGR---------------LY------------------------GLPKDEAEERAEELLELFELG-EAADR 120 (302)
T ss_pred CcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhCC
Confidence 999999852100 00 001112234677889999996 56789
Q ss_pred ccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEEecc
Q 005532 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (692)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~~d~i~~l~~G 332 (692)
++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|+ +.|.|||++||+++++..+||+|+++++|
T Consensus 121 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999988775 35899999999999999999999999999
Q ss_pred eEEEeccChHH
Q 005532 333 VSRTYEGNYSQ 343 (692)
Q Consensus 333 ~~~~~~G~y~~ 343 (692)
++. +.|...+
T Consensus 201 ~i~-~~g~~~~ 210 (302)
T TIGR01188 201 RII-AEGTPEE 210 (302)
T ss_pred EEE-EECCHHH
Confidence 984 5676543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=356.44 Aligned_cols=208 Identities=24% Similarity=0.381 Sum_probs=173.0
Q ss_pred cEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
.|+++|++|+|++ +++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999964 369999999999999999999999999999999999999999999998732
Q ss_pred ---ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHH
Q 005532 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (692)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (692)
..||||+|+|. .++..||.+|+...... ...+.....
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---------------------------------------~~~~~~~~~ 122 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKN---------------------------------------FKMNLDEVK 122 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHH---------------------------------------cCCCHHHHH
Confidence 25899999973 23445999998522100 001111233
Q ss_pred HHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEE
Q 005532 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (692)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~v 312 (692)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~v 202 (286)
T PRK13646 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILV 202 (286)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45677888999964567888999999999999999999999999999999999999999999887753 48999999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|||++++..+||+|+++++|++. +.|...++
T Consensus 203 tH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~ 233 (286)
T PRK13646 203 SHDMNEVARYADEVIVMKEGSIV-SQTSPKEL 233 (286)
T ss_pred ecCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999984 56776544
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=345.37 Aligned_cols=202 Identities=26% Similarity=0.415 Sum_probs=165.8
Q ss_pred cEEEEeEEEEeCCe----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------
Q 005532 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------ 160 (692)
+|+++|++++|++. ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999865 79999999999999999999999999999999999999999999998732
Q ss_pred -ceEEEEcccC--ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 -MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 -~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..++|++|++ .+.+..||++|+...... ... .. .......
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~---------------~~~-~~---------------------~~~~~~~ 123 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI---------------HGK-LS---------------------KKEARKE 123 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHh---------------ccC-Cc---------------------HHHHHHH
Confidence 2599999998 355678999998532100 000 00 0000011
Q ss_pred HHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 005532 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (692)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vs 313 (692)
.+.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|++ .+.|||+||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~s 203 (228)
T cd03257 124 AVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFIT 203 (228)
T ss_pred HHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1235677788853467888999999999999999999999999999999999999999999888753 378999999
Q ss_pred cCHHHHHhhcCeEEEEecceEE
Q 005532 314 HDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~ 335 (692)
||++++..+||+|+++++|++.
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 204 HDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred CCHHHHHHhcCeEEEEeCCEEE
Confidence 9999999999999999999874
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=359.23 Aligned_cols=211 Identities=17% Similarity=0.256 Sum_probs=174.3
Q ss_pred CCCcEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------
Q 005532 94 ISSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------- 160 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------- 160 (692)
..+.|+++|++|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 18 ~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~ 97 (320)
T PRK13631 18 DDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97 (320)
T ss_pred CCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccc
Confidence 3457999999999974 359999999999999999999999999999999999999999999997521
Q ss_pred ------------------ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Q 005532 161 ------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221 (692)
Q Consensus 161 ------------------~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 221 (692)
..|+||+|+|. .++..||.+|+...... .
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~--------------~------------------ 145 (320)
T PRK13631 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA--------------L------------------ 145 (320)
T ss_pred cccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh--------------c------------------
Confidence 24899999983 23456999998532100 0
Q ss_pred HHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHH
Q 005532 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301 (692)
Q Consensus 222 ~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~ 301 (692)
..+......++.++++.+|+.....++.+.+|||||||||+|||||+.+|+||||||||++||+.++.++.+.
T Consensus 146 -------~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~ 218 (320)
T PRK13631 146 -------GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQL 218 (320)
T ss_pred -------CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 0011122345667888899964567888999999999999999999999999999999999999999999887
Q ss_pred Hc---cCCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 302 LG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 302 L~---~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|+ +.+.|||+||||++++..+||+|++|++|++. ..|...++
T Consensus 219 L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g~~~~~ 263 (320)
T PRK13631 219 ILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTGTPYEI 263 (320)
T ss_pred HHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 74 35899999999999999999999999999984 56765544
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=344.52 Aligned_cols=199 Identities=31% Similarity=0.483 Sum_probs=165.4
Q ss_pred EEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----ceEEEEcccCccC-
Q 005532 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS- 173 (692)
Q Consensus 100 i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----~~i~~v~Q~~~~~- 173 (692)
++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++.+.
T Consensus 2 ~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~ 81 (213)
T cd03235 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDR 81 (213)
T ss_pred cccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccccc
Confidence 6899999988889999999999999999999999999999999999999999999998753 3699999998653
Q ss_pred -CCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccc
Q 005532 174 -MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (692)
Q Consensus 174 -~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (692)
+..||.||+........ ... .........++.++++.+|+. ..
T Consensus 82 ~~~~tv~e~l~~~~~~~~-----------~~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~ 125 (213)
T cd03235 82 DFPISVRDVVLMGLYGHK-----------GLF------------------------RRLSKADKAKVDEALERVGLS-EL 125 (213)
T ss_pred CCCCcHHHHHHhcccccc-----------ccc------------------------cCCCHHHHHHHHHHHHHcCCH-HH
Confidence 34799999853211000 000 000011234566788888986 56
Q ss_pred cccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEEE
Q 005532 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVET 329 (692)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~i~~l 329 (692)
.++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||+|+++
T Consensus 126 ~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l 205 (213)
T cd03235 126 ADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLL 205 (213)
T ss_pred HhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEE
Confidence 7888999999999999999999999999999999999999999999887753 5789999999999999999999999
Q ss_pred ecceE
Q 005532 330 EMGVS 334 (692)
Q Consensus 330 ~~G~~ 334 (692)
++|.+
T Consensus 206 ~~~~~ 210 (213)
T cd03235 206 NRTVV 210 (213)
T ss_pred cCcEe
Confidence 88743
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=347.18 Aligned_cols=201 Identities=23% Similarity=0.357 Sum_probs=170.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
+.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 35899999999988889999999999999999999999999999999999999999999998742 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.++. .|+.+|+...... . + ....++.++++.
T Consensus 82 ~~q~~~~~~-~tv~e~l~~~~~~---------------~--------------------------~--~~~~~~~~~l~~ 117 (241)
T PRK14250 82 VFQQPHLFE-GTVKDNIEYGPML---------------K--------------------------G--EKNVDVEYYLSI 117 (241)
T ss_pred EecCchhch-hhHHHHHhcchhh---------------c--------------------------C--cHHHHHHHHHHH
Confidence 999987754 6999987421000 0 0 012345567788
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~ 321 (692)
+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||++++..
T Consensus 118 ~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~ 197 (241)
T PRK14250 118 VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKR 197 (241)
T ss_pred cCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHH
Confidence 88864466888999999999999999999999999999999999999999999887753 48999999999999999
Q ss_pred hcCeEEEEecceEEEeccCh
Q 005532 322 LCTKIVETEMGVSRTYEGNY 341 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y 341 (692)
+||+|+++++|++. ..|..
T Consensus 198 ~~d~i~~l~~G~i~-~~~~~ 216 (241)
T PRK14250 198 IGDYTAFLNKGILV-EYAKT 216 (241)
T ss_pred hCCEEEEEeCCEEE-EeCCH
Confidence 99999999999985 34443
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=346.32 Aligned_cols=215 Identities=29% Similarity=0.426 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (692)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 4899999999998889999999999999999999999999999999999999999999998742 24999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..||.+|+........ .+...+. .........++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~-------~~~~~~~------------------------~~~~~~~~~~~~~~l~~ 130 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDK-------SVFASLF------------------------FRLSAEEKDRIEEVLET 130 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhccc-------ccccccc------------------------cccHHHHHHHHHHHHHH
Confidence 9999988888899999853211000 0000000 00001123456778888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~ 323 (692)
+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||+++++..+|
T Consensus 131 ~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 131 IGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 8986 567888999999999999999999999999999999999999999999888754 3689999999999999999
Q ss_pred CeEEEEecceEEEeccChHHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|+|+++++|++. +.|...++
T Consensus 210 d~i~~l~~g~~~-~~~~~~~~ 229 (242)
T TIGR03411 210 DKVTVLHQGSVL-AEGSLDQV 229 (242)
T ss_pred CEEEEEECCeEE-eeCCHHHH
Confidence 999999999974 56766544
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=343.01 Aligned_cols=201 Identities=25% Similarity=0.397 Sum_probs=166.6
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (692)
|+++|++++|++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 468999999998889999999999999999999999999999999999999999999998732 249999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..|+++|+....... . ......++.++++.+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-~----------------------------------------~~~~~~~~~~~l~~~ 119 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYAR-R----------------------------------------RAKRKARLERVYELF 119 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhc-C----------------------------------------chhHHHHHHHHHHHH
Confidence 99998878889999985321000 0 000112233444444
Q ss_pred -CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 005532 247 -GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 247 -gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~ 322 (692)
++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||++|||++++..+
T Consensus 120 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 120 PRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred Hhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 243 456788999999999999999999999999999999999999999999888753 578999999999999999
Q ss_pred cCeEEEEecceEEEeccCh
Q 005532 323 CTKIVETEMGVSRTYEGNY 341 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y 341 (692)
||+|+++++|++. ..|..
T Consensus 199 ~d~i~~l~~G~i~-~~~~~ 216 (222)
T cd03224 199 ADRAYVLERGRVV-LEGTA 216 (222)
T ss_pred ccEEEEeeCCeEE-EeCCH
Confidence 9999999999974 45654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=345.53 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=167.8
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCC-----CCCccEEEECCCC------------
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN------------ 160 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~-----~p~~G~I~~~~~~------------ 160 (692)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 46899999999889999999999999999999999999999999999999 9999999998742
Q ss_pred ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHH
Q 005532 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
..|+|++|++.++ ..||+||+...... .. .......+.++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 121 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRL---------------HG-----------------------IKLKEELDERVE 121 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHh---------------cC-----------------------CCcHHHHHHHHH
Confidence 2599999998876 78999998532100 00 000011234566
Q ss_pred HHhhhcCCCccccccc--cccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCH
Q 005532 241 KLMPELGFTADDGDRL--VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDR 316 (692)
Q Consensus 241 ~ll~~lgl~~~~~~~~--~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~--~~tvI~vsHd~ 316 (692)
++++.+|+.. ..++. +.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++. ..|||+||||+
T Consensus 122 ~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALWD-EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 7888889863 44555 5999999999999999999999999999999999999999999887542 27999999999
Q ss_pred HHHHhhcCeEEEEecceEEEeccC
Q 005532 317 AFLDQLCTKIVETEMGVSRTYEGN 340 (692)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~G~ 340 (692)
+++..+||+|+++++|++. +.|.
T Consensus 201 ~~~~~~~d~i~~l~~G~i~-~~g~ 223 (227)
T cd03260 201 QQAARVADRTAFLLNGRLV-EFGP 223 (227)
T ss_pred HHHHHhCCEEEEEeCCEEE-EecC
Confidence 9999999999999999974 3343
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=330.98 Aligned_cols=209 Identities=30% Similarity=0.445 Sum_probs=180.4
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc-----------eEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~-----------~i~ 164 (692)
+.+.++|+.|+|+.++++++|||+|++||+|||+||||+||||.+.++.|+++|++|+|.+++.+. .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 358999999999999999999999999999999999999999999999999999999999987543 599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcc--cHHHHHHHH
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKL 242 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~l 242 (692)
|+||++.+|..+||+|||+..+.-.. .+.+ .-..++..+
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~---------------------------------------~d~~~~~~~~~l~~L 123 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIRE---------------------------------------KDLKKAERKEELDAL 123 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhh---------------------------------------cchhHHHHHHHHHHH
Confidence 99999999999999999974321100 0111 112346688
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHH---HHHccCCCeEEEEecCHHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFL 319 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~---~~L~~~~~tvI~vsHd~~~l 319 (692)
|+.|.+. ...+.+..+||||||+|+.|||||+.+|+++||||||+|+||.++..+. ..|+..|..|+++.|+..+.
T Consensus 124 L~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 124 LEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred HHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence 8999986 6788999999999999999999999999999999999999998866655 45778899999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHHHH
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
..+|||.+++.+|++ .+.|+.++.+
T Consensus 203 L~i~dRaYIi~~G~v-la~G~p~ei~ 227 (243)
T COG1137 203 LDICDRAYIISDGKV-LAEGSPEEIV 227 (243)
T ss_pred HhhhheEEEEecCeE-EecCCHHHHh
Confidence 999999999999998 5788865544
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=381.29 Aligned_cols=210 Identities=28% Similarity=0.459 Sum_probs=181.7
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhcCC
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~ 503 (692)
+|+++|++++|+++++|+++||+|++|+++||+|||||||||||++|+|+++|++|+|.+++. ...+|++|.. .+..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q~~--~~~~ 77 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQDQ--FAFE 77 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccC--CcCC
Confidence 489999999999889999999999999999999999999999999999999999999999864 2457777753 3556
Q ss_pred CccHHHHHHHHhc-------------------------------------ccc-HHHHHHHHhhcCCCcccccccCCCCC
Q 005532 504 DKTVLETVAEAAE-------------------------------------DWR-IDDIKGLLGRCNFKADMLDRKVSLLS 545 (692)
Q Consensus 504 ~~tv~e~~~~~~~-------------------------------------~~~-~~~~~~~L~~~~l~~~~~~~~~~~LS 545 (692)
..|+.+++..... .+. ...+..+|+.+|+.....++++.+||
T Consensus 78 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS 157 (530)
T PRK15064 78 EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVA 157 (530)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcC
Confidence 7899888764210 001 13466889999996433457899999
Q ss_pred HHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCCh
Q 005532 546 GGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (692)
Q Consensus 546 gGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~ 625 (692)
|||||||+|||+|+.+|+||||||||||||+.++.+|.+.|.+.+.|||+||||++++..+||+|++|++|++..|.|+|
T Consensus 158 gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~~~g~~ 237 (530)
T PRK15064 158 PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRVYPGNY 237 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEEecCCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999997789999
Q ss_pred hHHHHHhHHHH
Q 005532 626 NYYLEKNLDAR 636 (692)
Q Consensus 626 ~~~~~~~~~~~ 636 (692)
++|..+++...
T Consensus 238 ~~~~~~~~~~~ 248 (530)
T PRK15064 238 DEYMTAATQAR 248 (530)
T ss_pred HHHHHHHHHHH
Confidence 99987666443
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=367.66 Aligned_cols=192 Identities=24% Similarity=0.346 Sum_probs=163.3
Q ss_pred eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceEEEEcccCccCCCC
Q 005532 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEFEVSMSR 176 (692)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i~~v~Q~~~~~~~~ 176 (692)
.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++.++++.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 38999999999999999999999999999999999999999999998742 2599999999988889
Q ss_pred CHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccc
Q 005532 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (692)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (692)
||.||+...... . ........+++.++++.+|+. ...+++
T Consensus 122 Tv~enl~~~~~~---------------~------------------------~~~~~~~~~~~~e~L~~~gL~-~~~~~~ 161 (400)
T PRK10070 122 TVLDNTAFGMEL---------------A------------------------GINAEERREKALDALRQVGLE-NYAHSY 161 (400)
T ss_pred CHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCC-hhhhcC
Confidence 999998532100 0 001112234567889999996 577899
Q ss_pred cccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeEEEEecc
Q 005532 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (692)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~~d~i~~l~~G 332 (692)
+.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|. +.++|||+||||++++..+||+|++|++|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 99999999999999999999999999999999999999999988774 25899999999999999999999999999
Q ss_pred eEEEeccChHH
Q 005532 333 VSRTYEGNYSQ 343 (692)
Q Consensus 333 ~~~~~~G~y~~ 343 (692)
++. ..|...+
T Consensus 242 ~i~-~~g~~~~ 251 (400)
T PRK10070 242 EVV-QVGTPDE 251 (400)
T ss_pred EEE-ecCCHHH
Confidence 984 5565443
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=347.03 Aligned_cols=208 Identities=21% Similarity=0.297 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~I~~~~~~----------- 160 (692)
+|+++|++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 388999999999888999999999999999999999999999999999999998 9999998642
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.+++ .|+.+|+...... .. .........++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~ 121 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRL---------------HG-----------------------IKDKKELDEIV 121 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 25999999998876 9999998532100 00 00011223456
Q ss_pred HHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 67788888852 356788999999999999999999999999999999999999999999888754 2589999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|++++..+||+|++|++|++. ..|...++
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 230 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELV-EYGPTEQI 230 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999984 45655443
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=340.30 Aligned_cols=192 Identities=29% Similarity=0.467 Sum_probs=166.9
Q ss_pred EEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-------eeeeecccc
Q 005532 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQ 497 (692)
Q Consensus 426 ~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-------~~~~~~q~~ 497 (692)
+++|+++.|++ +.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++ ..+|++|+.
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 7899999999999999999999999999999999999999999999998764 245777653
Q ss_pred hhhcCCCccHHHHHHHHhcc--ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCC
Q 005532 498 AEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (692)
Q Consensus 498 ~~~l~~~~tv~e~~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD 575 (692)
...+ +..|+.+|+...... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 158 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLD 158 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCC
Confidence 2222 357999998754321 1234678899999995 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEE
Q 005532 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (692)
Q Consensus 576 ~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~ 619 (692)
+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|+++
T Consensus 159 ~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 159 YKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999876 469999999999999999999999999863
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=364.36 Aligned_cols=199 Identities=24% Similarity=0.323 Sum_probs=170.4
Q ss_pred EEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceEEEEcccC
Q 005532 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEF 170 (692)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i~~v~Q~~ 170 (692)
|.|+++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+||+|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 45788889999999999999999999999999999999999999999999998732 3699999999
Q ss_pred ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCc
Q 005532 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (692)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (692)
+++++.||++|+...... .........+++.++++.+|+.
T Consensus 81 ~l~~~~TV~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~vgL~- 120 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL---------------------------------------LGWPEQERKEKALELLKLVGLE- 120 (363)
T ss_pred cCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhcCCc-
Confidence 999999999998532100 0011122345677889999996
Q ss_pred cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCHHHHHhhcCeE
Q 005532 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (692)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~~~l~~~~d~i 326 (692)
...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|. +.++|||+||||++++..+||+|
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 57899999999999999999999999999999999999999999999988764 34899999999999999999999
Q ss_pred EEEecceEEEeccChHHH
Q 005532 327 VETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 327 ~~l~~G~~~~~~G~y~~~ 344 (692)
++|++|++. ..|...++
T Consensus 201 ~vl~~G~iv-~~g~~~ei 217 (363)
T TIGR01186 201 VIMKAGEIV-QVGTPDEI 217 (363)
T ss_pred EEEeCCEEE-eeCCHHHH
Confidence 999999974 55765544
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=348.56 Aligned_cols=207 Identities=25% Similarity=0.425 Sum_probs=174.6
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------------
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------- 160 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------------- 160 (692)
|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 468999999998889999999999999999999999999999999999999999999988632
Q ss_pred ------ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCccc
Q 005532 161 ------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (692)
Q Consensus 161 ------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (692)
..|+|++|++.+++..|+.+|+....... . ......
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--------------~------------------------~~~~~~ 122 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--------------L------------------------GMARAE 122 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--------------c------------------------CCCHHH
Confidence 25999999998888899999985321000 0 001112
Q ss_pred HHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 005532 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI 310 (692)
...++.++++.+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||
T Consensus 123 ~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234566788888986 567888999999999999999999999999999999999999999999887753 488999
Q ss_pred EEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 311 ~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+||||++++..+||+++++++|++. ..|.+.++
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEI 234 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999984 56766544
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=361.20 Aligned_cols=203 Identities=26% Similarity=0.370 Sum_probs=176.3
Q ss_pred eEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
||+++||++.|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 5899999999952 47999999999999999999999999999999999999999999999987642
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhcc
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~ 560 (692)
.+|++|+. .+.+..|+.+|+...... +. ...+.++|+.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 r~~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~ 157 (343)
T TIGR02314 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHh
Confidence 35666653 566789999999765321 21 23477899999995 67899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 561 ~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+|++|||||||++||+.++..+.+.|++. +.|||+||||++.+.++||+|++|++|+++. .|+.+++..
T Consensus 158 ~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~-~g~~~~v~~ 230 (343)
T TIGR02314 158 NPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QGTVSEIFS 230 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHc
Confidence 99999999999999999999999998764 5699999999999999999999999999985 477766654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=359.21 Aligned_cols=211 Identities=21% Similarity=0.385 Sum_probs=176.0
Q ss_pred CCcEEEEeEEEEeCC-------------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-
Q 005532 95 SSGVKLENISKSYKG-------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~-------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~- 160 (692)
.++|+++|++++|+. .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 357999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred ------------ceEEEEcccC--ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 005532 161 ------------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226 (692)
Q Consensus 161 ------------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 226 (692)
..|+|++|+| .+++..||.+||...... ..
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~--------------~~---------------------- 129 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRT--------------YH---------------------- 129 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHH--------------hc----------------------
Confidence 2599999998 466678999998532100 00
Q ss_pred HhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--
Q 005532 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-- 304 (692)
Q Consensus 227 ~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~-- 304 (692)
...+......++.++++.+|+.+...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|++
T Consensus 130 -~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~ 208 (331)
T PRK15079 130 -PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQ 208 (331)
T ss_pred -cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 00111223456678889999965577899999999999999999999999999999999999999999999887642
Q ss_pred --CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 305 --QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 305 --~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.+.|+|+||||++++..+||+|++|.+|++. ..|...+
T Consensus 209 ~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~g~~~~ 248 (331)
T PRK15079 209 REMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-ELGTYDE 248 (331)
T ss_pred HHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHH
Confidence 4899999999999999999999999999984 4566543
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=337.15 Aligned_cols=220 Identities=30% Similarity=0.415 Sum_probs=185.0
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc-----------eEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~-----------~i~ 164 (692)
+.+++++++++||+-.+++||||+|++||+++||||||||||||+++|+|.++|++|+|.+.|.+. .|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 468899999999999999999999999999999999999999999999999999999999998642 589
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
.-+|.+.+++++||.||++.+...... +...+... ...-...+..+++.++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-------~~~~l~~~--------------------~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-------LSGLLGRP--------------------RARKEEREARERARELLE 135 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-------hhhhhccc--------------------cchhhHHHHHHHHHHHHH
Confidence 999999999999999999754221100 00001000 000012345577889999
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHH
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~-~~~tvI~vsHd~~~l~ 320 (692)
.+|+. +..+++..+||+|||+|+.|||||+.+|++||||||.+||.+.....+.++++ + .|.||++|.||+..+.
T Consensus 136 ~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 136 FVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred HcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh
Confidence 99997 68899999999999999999999999999999999999999999988887764 3 5799999999999999
Q ss_pred hhcCeEEEEecceEEEeccChHHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
.+||||++|+.|++ ..+|.+.+.
T Consensus 215 ~l~dri~Vl~~G~~-IAeG~P~eV 237 (250)
T COG0411 215 GLADRIVVLNYGEV-IAEGTPEEV 237 (250)
T ss_pred hhccEEEeccCCcC-cccCCHHHH
Confidence 99999999999997 678987654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=345.91 Aligned_cols=212 Identities=25% Similarity=0.327 Sum_probs=173.2
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEECCCC-----------ceEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKIA 164 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~I~~~~~~-----------~~i~ 164 (692)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 46899999999888999999999999999999999999999999999995 7999999998742 2389
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..|+.+|+....... ...... ...+.....+++.++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~-----------~~~~~~---------------------~~~~~~~~~~~~~~~l~ 128 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNAR-----------RSARGE---------------------EPLDLLDFLKLLKAKLA 128 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHh-----------hccccc---------------------ccccHHHHHHHHHHHHH
Confidence 9999998888889999985321100 000000 00011123356778889
Q ss_pred hcCCCccccccccc-cCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 005532 245 ELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~ 320 (692)
.+|+.....++++. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 129 ~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 99996445677776 5999999999999999999999999999999999999999988754 4789999999999999
Q ss_pred hh-cCeEEEEecceEEEeccChH
Q 005532 321 QL-CTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 321 ~~-~d~i~~l~~G~~~~~~G~y~ 342 (692)
.+ ||+|+++++|++ .+.|+++
T Consensus 209 ~~~~d~i~~l~~G~i-~~~g~~~ 230 (243)
T TIGR01978 209 YIKPDYVHVLLDGRI-VKSGDVE 230 (243)
T ss_pred hhcCCeEEEEeCCEE-EEecCHH
Confidence 98 899999999998 4567654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=348.87 Aligned_cols=206 Identities=29% Similarity=0.394 Sum_probs=173.5
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v 166 (692)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4899999999998889999999999999999999999999999999999999999999998742 258999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..||+||+....... .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 122 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPH---------------------------------------GLSRAEDDALVAAALAQV 122 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhccc---------------------------------------CCCcHHHHHHHHHHHHHc
Confidence 99988878889999985321000 000011223456778888
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHc------cCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEEEEecCH
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~------~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI~vsHd~ 316 (692)
|+. ...++.+.+|||||||||+|||||+ .+|++|||||||++||+.+++.+.++|+ +.+.|||+||||+
T Consensus 123 ~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 123 DLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 886 5678889999999999999999999 5999999999999999999998887764 4578999999999
Q ss_pred HHHHhhcCeEEEEecceEEEeccChHH
Q 005532 317 AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+++..+||+|+++++|++. +.|.+.+
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~~ 227 (258)
T PRK13548 202 NLAARYADRIVLLHQGRLV-ADGTPAE 227 (258)
T ss_pred HHHHHhcCEEEEEECCEEE-eeCCHHH
Confidence 9999999999999999974 5566544
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=348.16 Aligned_cols=196 Identities=29% Similarity=0.429 Sum_probs=171.9
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-----eeeeeccc
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQN 496 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-----~~~~~~q~ 496 (692)
.++|+++||+++|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|.
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 4569999999999988899999999999999999999999999999999999999999999987653 24577765
Q ss_pred chhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCH
Q 005532 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~ 576 (692)
. .+.+..|+.+|+...........+.++++.+++. ...++++.+|||||||||+|||+|+.+|++|||||||++||+
T Consensus 90 ~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~ 166 (257)
T PRK11247 90 A--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA 166 (257)
T ss_pred c--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 3 4556689999987643211234578899999995 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 577 PSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 577 ~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
.++..+.+.|.++ +.|||+||||++++..+||+|++|++|++..
T Consensus 167 ~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~ 214 (257)
T PRK11247 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGL 214 (257)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999988754 5699999999999999999999999999974
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=346.20 Aligned_cols=211 Identities=21% Similarity=0.281 Sum_probs=174.5
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~---------- 160 (692)
+.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 369999999999988899999999999999999999999999999999999974 69999998742
Q ss_pred ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHH
Q 005532 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
..|+|++|++.+++..||.+|+...... ... ........+++.
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~~~~~ 124 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKL---------------NRL----------------------VKSKKELQERVR 124 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHh---------------ccc----------------------cCCHHHHHHHHH
Confidence 3599999998877889999998532110 000 000011234556
Q ss_pred HHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 005532 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (692)
Q Consensus 241 ~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd 315 (692)
++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+||||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 204 (250)
T PRK14247 125 WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHF 204 (250)
T ss_pred HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7778888742 246888999999999999999999999999999999999999999999888754 37899999999
Q ss_pred HHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
++++..+||+|+++++|++ ...|...+.
T Consensus 205 ~~~~~~~~d~i~~l~~G~i-~~~g~~~~~ 232 (250)
T PRK14247 205 PQQAARISDYVAFLYKGQI-VEWGPTREV 232 (250)
T ss_pred HHHHHHhcCEEEEEECCeE-EEECCHHHH
Confidence 9999999999999999997 456765443
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=350.67 Aligned_cols=210 Identities=17% Similarity=0.377 Sum_probs=173.0
Q ss_pred CcEEEEeEEEEeCC---------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------
Q 005532 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------ 160 (692)
++|+++|++++|+. .++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46999999999962 469999999999999999999999999999999999999999999998632
Q ss_pred ----ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCccc
Q 005532 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (692)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (692)
..|+|++|++. +.+..|+.+++...... . .......
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~---------------~-----------------------~~~~~~~ 124 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL---------------N-----------------------TDLEPEQ 124 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHh---------------c-----------------------cCCCHHH
Confidence 25999999974 34556888886421100 0 0001112
Q ss_pred HHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 005532 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI 310 (692)
..+++.++++.+|+.+...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|.+ .+.|||
T Consensus 125 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvi 204 (267)
T PRK15112 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYI 204 (267)
T ss_pred HHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEE
Confidence 2345677888999854566788899999999999999999999999999999999999999999887753 488999
Q ss_pred EEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 311 ~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+|||+++++..+||+|+++++|++. ..|.+.++
T Consensus 205 ivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 237 (267)
T PRK15112 205 YVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADV 237 (267)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHH
Confidence 9999999999999999999999984 56766544
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=350.38 Aligned_cols=208 Identities=25% Similarity=0.465 Sum_probs=172.0
Q ss_pred cEEEEeEEEEeC---------CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------
Q 005532 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------- 160 (692)
+|+++|++|.|+ ++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 489999999996 3579999999999999999999999999999999999999999999998732
Q ss_pred ------ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCc
Q 005532 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (692)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (692)
..|+|++|++. +.+..|+.+|+...... .. .+..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~--------------~~------------------------~~~~ 123 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH--------------LT------------------------SLDE 123 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH--------------hc------------------------CCCH
Confidence 24999999973 44568999997422100 00 0011
Q ss_pred ccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCe
Q 005532 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (692)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~t 308 (692)
.....++.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++ .+.|
T Consensus 124 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 124 SEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 122345667888899864567889999999999999999999999999999999999999999888877643 4899
Q ss_pred EEEEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 309 vI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+||||++++..+||+++++++|++. ..|...+
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 237 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQ 237 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHH
Confidence 999999999999999999999999974 5666543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=380.63 Aligned_cols=209 Identities=32% Similarity=0.575 Sum_probs=183.4
Q ss_pred CceEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhh
Q 005532 422 RSVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500 (692)
Q Consensus 422 ~~~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~ 500 (692)
+++|+++||++.|+ ++++|+++||+|++|+++||+|||||||||||++|+|+++|++|+|.+++. ...+|++|+. .
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-~~i~~v~Q~~--~ 80 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-IKVGYLPQEP--Q 80 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCC--C
Confidence 45799999999998 788999999999999999999999999999999999999999999998643 3567888763 4
Q ss_pred cCCCccHHHHHHHHhc----------------c-------------------------cc-HHHHHHHHhhcCCCccccc
Q 005532 501 LDLDKTVLETVAEAAE----------------D-------------------------WR-IDDIKGLLGRCNFKADMLD 538 (692)
Q Consensus 501 l~~~~tv~e~~~~~~~----------------~-------------------------~~-~~~~~~~L~~~~l~~~~~~ 538 (692)
+.+..|+.+|+..... . |. ...+..+++.+|+. . .+
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~-~~ 158 (556)
T PRK11819 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-P-WD 158 (556)
T ss_pred CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-c-cc
Confidence 5567899999864210 0 11 13466788999994 3 68
Q ss_pred ccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 539 ~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
+++.+|||||||||+|||+|+.+|+||||||||||||+.++.++.+.|+++.+|||+||||++++..+||+|++|++|++
T Consensus 159 ~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~i 238 (556)
T PRK11819 159 AKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGRG 238 (556)
T ss_pred CchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCEE
Confidence 99999999999999999999999999999999999999999999999999988999999999999999999999999999
Q ss_pred EEecCChhHHHHHhHHH
Q 005532 619 QDYAGDYNYYLEKNLDA 635 (692)
Q Consensus 619 ~~~~g~~~~~~~~~~~~ 635 (692)
..|.|+|+.|.+.++..
T Consensus 239 ~~~~g~~~~~~~~~~~~ 255 (556)
T PRK11819 239 IPWEGNYSSWLEQKAKR 255 (556)
T ss_pred EEecCCHHHHHHHHHHH
Confidence 88999999998766543
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=347.39 Aligned_cols=209 Identities=25% Similarity=0.395 Sum_probs=173.0
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------- 160 (692)
++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 36999999999988889999999999999999999999999999999999999999999998754
Q ss_pred ----ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCccc
Q 005532 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (692)
Q Consensus 161 ----~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (692)
..++|++|++. +....|+.+|+...+.. .. ..+...
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~--------------~~------------------------~~~~~~ 126 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMA--------------VG------------------------ARHYGD 126 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHH--------------hc------------------------cCcHHH
Confidence 14999999974 44566888887421100 00 000011
Q ss_pred HHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCCCeEE
Q 005532 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMV 310 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~~tvI 310 (692)
...++.++++.+|+.....++++.+|||||+|||+|||||+.+|+||||||||++||+.+++++.+.|+ +.+.|||
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234566778888986446688899999999999999999999999999999999999999999988764 2488999
Q ss_pred EEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 311 ~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+||||++++..+||+|+++++|++ .+.|...+
T Consensus 207 ~isH~~~~~~~~~d~i~~l~~g~i-~~~~~~~~ 238 (258)
T PRK11701 207 IVTHDLAVARLLAHRLLVMKQGRV-VESGLTDQ 238 (258)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEE-EEeCCHHH
Confidence 999999999999999999999998 45666544
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-41 Score=355.22 Aligned_cols=204 Identities=26% Similarity=0.411 Sum_probs=176.4
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc---------eeeee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~---------~~~~~ 493 (692)
.+|+++||++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++ ..+|+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 469999999999988899999999999999999999999999999999999999999999988654 24567
Q ss_pred cccchhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
+|+. .+.+..|+.+|+..... ... ...+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 83 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (303)
T TIGR01288 83 PQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLARALINDPQLLIL 159 (303)
T ss_pred eccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 7653 45667899999874321 111 12466789999995 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||+|||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++. +.|+.++...
T Consensus 160 DEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 224 (303)
T TIGR01288 160 DEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKI-AEGRPHALID 224 (303)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 9999999999999999999876 469999999999999999999999999987 4577766543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=320.55 Aligned_cols=196 Identities=30% Similarity=0.412 Sum_probs=173.7
Q ss_pred eEEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------
Q 005532 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------- 489 (692)
||+++||++.|++ +++|+||||+|++||++-|+||+|||||||||+|++..+|+.|+|+++|.++.
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 5899999999975 55999999999999999999999999999999999999999999999998762
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
++.++| +..+.++.||+||+....... -..++.+.|+.+|+. +..+..|.+|||||||||+||||++.+|+
T Consensus 81 IGvVFQ--D~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~ 157 (223)
T COG2884 81 IGVVFQ--DFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPA 157 (223)
T ss_pred eeeEee--eccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCC
Confidence 345555 456778999999998764311 124688899999995 56788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEec
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~ 622 (692)
|||.||||.+||++....|++++.++ +.||||.|||.+.+.++-.|++.|++|++..+.
T Consensus 158 vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 158 VLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred eEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecc
Confidence 99999999999999999999998876 459999999999999999999999999998764
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=351.48 Aligned_cols=207 Identities=20% Similarity=0.282 Sum_probs=171.0
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------ceEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIA 164 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------~~i~ 164 (692)
+|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 3889999999998889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEcccCcc-CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 165 ~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
|++|++.. .+..|+.+|+...... . .........++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN---------------L------------------------GVPEAEITRRVDEAL 121 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 99999753 2455788887421100 0 000111223456778
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~ 320 (692)
+.+|+. ...++++.+||||||||++|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 122 TLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888885 466888999999999999999999999999999999999999999999888753 4789999999999999
Q ss_pred hhcCeEEEEecceEEEeccChHHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
.+||+++++++|++. ..|...++
T Consensus 201 ~~~d~i~~l~~G~i~-~~g~~~~~ 223 (271)
T PRK13638 201 EISDAVYVLRQGQIL-THGAPGEV 223 (271)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999974 56665443
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=359.01 Aligned_cols=206 Identities=26% Similarity=0.404 Sum_probs=179.2
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------ee
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PN 491 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~ 491 (692)
+..+|+++||+++|+++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 345799999999999989999999999999999999999999999999999999999999999987642 45
Q ss_pred eecccchhhcCCCccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
|++|+ ..+.+..|+.+|+......+ . ...+.++++.+++. +..++++.+|||||||||+||+||+.+|+||
T Consensus 118 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 118 VVPQF--DNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEeCC--ccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 66665 35667889999987532211 1 12466789999995 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||+|||+.++..+.++|+++ +.|||++||+++++.++||+|++|++|++. +.|..+++..
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~-~~g~~~~l~~ 261 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKI-AEGRPHALID 261 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHHh
Confidence 999999999999999999999875 469999999999999999999999999998 4677777644
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=351.93 Aligned_cols=209 Identities=23% Similarity=0.383 Sum_probs=175.2
Q ss_pred CcEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------ce
Q 005532 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MK 162 (692)
Q Consensus 96 ~~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------~~ 162 (692)
++|+++|++++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 3699999999996 5679999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 005532 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 163 i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
|+|++|++. ..+..|+.+|+...... ..........++..
T Consensus 84 ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~ 124 (283)
T PRK13636 84 VGMVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------LKLPEDEVRKRVDN 124 (283)
T ss_pred EEEEecCcchhhccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 999999974 23567999998532100 00111122345677
Q ss_pred HhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHH
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~ 317 (692)
+++.+|+. ...++++.+||||||||++|||||+.+|+||||||||++||+.++..+.++|++ .|.|||++|||++
T Consensus 125 ~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~ 203 (283)
T PRK13636 125 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID 203 (283)
T ss_pred HHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 88889996 577899999999999999999999999999999999999999999988877642 4899999999999
Q ss_pred HHHhhcCeEEEEecceEEEeccChHHHH
Q 005532 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
++..+||+|+++++|++ .+.|.+.++.
T Consensus 204 ~~~~~~dri~~l~~G~i-~~~g~~~~~~ 230 (283)
T PRK13636 204 IVPLYCDNVFVMKEGRV-ILQGNPKEVF 230 (283)
T ss_pred HHHHhCCEEEEEECCEE-EEeCCHHHHh
Confidence 99999999999999998 4678765543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=351.70 Aligned_cols=207 Identities=23% Similarity=0.324 Sum_probs=170.6
Q ss_pred cEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------- 160 (692)
.|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 3899999999975 369999999999999999999999999999999999999999999998732
Q ss_pred ---ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHH
Q 005532 161 ---MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (692)
Q Consensus 161 ---~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (692)
..|+|++|++. .++..||.+|+...... . ........
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~ 122 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQN---------------F------------------------GVSQEEAE 122 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHH---------------c------------------------CCCHHHHH
Confidence 24899999973 23456999998521100 0 00111223
Q ss_pred HHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEe
Q 005532 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIIS 313 (692)
Q Consensus 237 ~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vs 313 (692)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|++ .++|||+||
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 202 (280)
T PRK13649 123 ALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202 (280)
T ss_pred HHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 45667788888864456888999999999999999999999999999999999999999999887753 488999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||++++..+||+|+++++|++. +.|...+
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 231 (280)
T PRK13649 203 HLMDDVANYADFVYVLEKGKLV-LSGKPKD 231 (280)
T ss_pred ccHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999974 4566543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=352.18 Aligned_cols=204 Identities=27% Similarity=0.345 Sum_probs=172.5
Q ss_pred EEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceEE
Q 005532 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIA 164 (692)
Q Consensus 99 ~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i~ 164 (692)
.++|+++.|++.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 56799999999999999999999999999999999999999999999999999999998732 2599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..|+.+|+...... . .........++.++++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV---------------Q------------------------GVPRAEREERAAEALE 146 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999887788999998532100 0 0001112345667888
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHH
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~ 320 (692)
.+|+. +..++++.+|||||||||+|||||+.+|+||||||||+|||+.+++++.++|.+ .|.|||++|||++++.
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 88986 567889999999999999999999999999999999999999999999887643 3789999999999999
Q ss_pred hhcCeEEEEecceEEEeccChHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.+||+++++++|++. ..|...+
T Consensus 226 ~~~d~v~~l~~G~i~-~~g~~~~ 247 (269)
T cd03294 226 RLGDRIAIMKDGRLV-QVGTPEE 247 (269)
T ss_pred HhcCEEEEEECCEEE-EeCCHHH
Confidence 999999999999984 4565443
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=338.35 Aligned_cols=196 Identities=24% Similarity=0.371 Sum_probs=166.1
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
|+++|++++|+++.+ |+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 468999999987643 9999999999999999999999999999999999999999998743 259999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+.||+........ . . ....+.++.++++.+|+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~-------------~-------------------------~-~~~~~~~~~~~l~~~~l~ 119 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGL-------------K-------------------------L-TAEDRQAIEVALARVGLA 119 (211)
T ss_pred cccCCCCcHHHHHhccccccc-------------C-------------------------c-cHHHHHHHHHHHHHcCCH
Confidence 988778899999853211000 0 0 001134566788888986
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
+..++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 120 -GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 467888999999999999999999999999999999999999999999887753 489999999999999999999
Q ss_pred EEEEecceEE
Q 005532 326 IVETEMGVSR 335 (692)
Q Consensus 326 i~~l~~G~~~ 335 (692)
|+++++|++.
T Consensus 199 i~~l~~G~i~ 208 (211)
T cd03298 199 VVFLDNGRIA 208 (211)
T ss_pred EEEEECCEEe
Confidence 9999999874
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=339.06 Aligned_cols=196 Identities=28% Similarity=0.382 Sum_probs=170.2
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeeecc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~~q 495 (692)
|+++|+++.|+++.+|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 57899999999889999999999999999999999999999999999999999999999886541 356666
Q ss_pred cchhhcCCCccHHHHHHHHhcc----c--cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 496 NQAEALDLDKTVLETVAEAAED----W--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~----~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
+. .+.+..|+.+++...... . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDE 157 (220)
T cd03265 81 DL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDE 157 (220)
T ss_pred Cc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 53 456678999998754211 1 123578899999995 56789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCC
Q 005532 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~ 624 (692)
||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++... |+
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~-~~ 215 (220)
T cd03265 158 PTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAE-GT 215 (220)
T ss_pred CccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEe-CC
Confidence 99999999999999998764 56999999999999999999999999999753 44
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=352.53 Aligned_cols=202 Identities=31% Similarity=0.453 Sum_probs=179.0
Q ss_pred eEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeee
Q 005532 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~ 493 (692)
+++++||++.|+ ++.+|+||||+|++|+++||+||||||||||||+|+|++.|++|+|.++|.++. .+|+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 578999999999 699999999999999999999999999999999999999999999999986542 4788
Q ss_pred cccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
+|.+ .+.+.+|+.|++......+ ....+.++++.+++.. ..++++..||+||||||.||.||+.+|+||||
T Consensus 84 ~~~~--~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliL 160 (293)
T COG1131 84 PQEP--SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLIL 160 (293)
T ss_pred ccCC--CCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 7764 4778999999998765432 2346889999999975 44888999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---C-ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY---K-GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~---~-~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+|||+.++..+.+.|+++ + .|||++||.++.+..+||+|++|++|++..+ |..+++.
T Consensus 161 DEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~-g~~~~l~ 225 (293)
T COG1131 161 DEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE-GTPEELK 225 (293)
T ss_pred CCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEe-CCHHHHH
Confidence 9999999999999999999876 3 4999999999999999999999999999854 5666543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=356.39 Aligned_cols=208 Identities=22% Similarity=0.388 Sum_probs=174.5
Q ss_pred CcEEEEeEEEEeCC----------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----
Q 005532 96 SGVKLENISKSYKG----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----- 160 (692)
++|+++|+++.|+. .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~ 83 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKAD 83 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCC
Confidence 46999999999962 469999999999999999999999999999999999999999999998732
Q ss_pred --------ceEEEEcccC--ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhc
Q 005532 161 --------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (692)
Q Consensus 161 --------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (692)
..|+|++|+| .+.+..||.+++...+.. . ...
T Consensus 84 ~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~---------------~-----------------------~~~ 125 (327)
T PRK11308 84 PEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLI---------------N-----------------------TSL 125 (327)
T ss_pred HHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHH---------------c-----------------------cCC
Confidence 2599999998 466678998887421100 0 001
Q ss_pred CcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CC
Q 005532 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QD 306 (692)
Q Consensus 231 ~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~ 306 (692)
.......++.++|+.+|+.+...++++.+|||||+|||+|||||+.+|+|||+||||++||+.++.++.++|++ .+
T Consensus 126 ~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g 205 (327)
T PRK11308 126 SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELG 205 (327)
T ss_pred CHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcC
Confidence 11223456778899999965567999999999999999999999999999999999999999999999887743 58
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEecceEEEeccChH
Q 005532 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 307 ~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
.|||+||||+..+..+||+|++|.+|++. ..|...
T Consensus 206 ~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~ 240 (327)
T PRK11308 206 LSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKE 240 (327)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHH
Confidence 99999999999999999999999999985 456543
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=344.86 Aligned_cols=210 Identities=21% Similarity=0.256 Sum_probs=171.7
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~---------- 160 (692)
.+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 469999999999988899999999999999999999999999999999999987 49999998642
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.+++..||.+|+...... .... ........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~~~----------------------~~~~~~~~~ 125 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKL---------------NGLV----------------------KSKKELDER 125 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHh---------------cCcc----------------------CCHHHHHHH
Confidence 2599999999887788999998532100 0000 000112234
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .++|||+||
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred HHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 556667777632 245778999999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||++++..+||+|+++++|++. ..|...+
T Consensus 206 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 234 (253)
T PRK14267 206 HSPAQAARVSDYVAFLYLGKLI-EVGPTRK 234 (253)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999984 5566543
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=346.16 Aligned_cols=210 Identities=26% Similarity=0.347 Sum_probs=174.5
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v 166 (692)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4899999999998889999999999999999999999999999999999999999999998742 249999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..|+.+|+......... .+. ........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~----------~~~-------------------------~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLS----------LWG-------------------------RLSAEDNARVNQAMEQT 126 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhh----------hcc-------------------------CCCHHHHHHHHHHHHHc
Confidence 9998877777999997532100000 000 00011234566778888
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhc
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~ 323 (692)
|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||++|||++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 127 RIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred CCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 885 467888999999999999999999999999999999999999999999887743 5889999999999999999
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|+++++|++. +.|.+++
T Consensus 206 d~i~~l~~G~i~-~~~~~~~ 224 (255)
T PRK11231 206 DHLVVLANGHVM-AQGTPEE 224 (255)
T ss_pred CEEEEEECCeEE-EEcCHHH
Confidence 999999999974 5666544
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=344.75 Aligned_cols=208 Identities=19% Similarity=0.299 Sum_probs=169.7
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~---------- 160 (692)
+.|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 84 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVE 84 (253)
T ss_pred cEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHH
Confidence 46999999999998889999999999999999999999999999999999964 589999998732
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.+++ .||.+|+...+.. ... ........+
T Consensus 85 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 125 (253)
T PRK14242 85 LRRRVGMVFQKPNPFP-KSIFENVAYGLRV---------------NGV-----------------------KDKAYLAER 125 (253)
T ss_pred HhhcEEEEecCCCCCc-CcHHHHHHHHHHH---------------cCC-----------------------CCHHHHHHH
Confidence 25999999987765 5999998532110 000 000012234
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+||
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~t 205 (253)
T PRK14242 126 VERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVT 205 (253)
T ss_pred HHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEE
Confidence 556667777632 235778999999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||++++..+||+|+++++|++. ..|...+
T Consensus 206 H~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 234 (253)
T PRK14242 206 HNMQQAARVSDVTAFFYMGKLI-EVGPTEQ 234 (253)
T ss_pred ecHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999984 4565443
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=318.17 Aligned_cols=206 Identities=23% Similarity=0.379 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc--------eEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~--------~i~~v~Q~ 169 (692)
|.+.+|.|+|+..+. ..+++|+.||+++|+||+||||||||++|+|+..|.+|+|.++|.+. .|++++|+
T Consensus 2 l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred ccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 678999999987653 46789999999999999999999999999999999999999998542 49999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
-++|..+||.+||-.+..+.++.. + .-+++++.++..+|+.
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~--------------------------------------a-~~r~~v~~aa~~vGl~ 120 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLN--------------------------------------A-EQREKVEAAAAQVGLA 120 (231)
T ss_pred cccchhhhhhhhhcccCCcccccC--------------------------------------H-HHHHHHHHHHHHhChh
Confidence 999999999999965443321110 0 1134667778888996
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~~~d~ 325 (692)
...+|.+.+|||||||||||||+|+.+-+||||||||++|||.-+..+..++ .+.+.|++||||.++.+.+++++
T Consensus 121 -~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~ 199 (231)
T COG3840 121 -GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADR 199 (231)
T ss_pred -hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhc
Confidence 5789999999999999999999999999999999999999999988877654 45789999999999999999999
Q ss_pred EEEEecceEEEeccChHHHHH
Q 005532 326 IVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~~ 346 (692)
++++++|++ .|.|...+++.
T Consensus 200 ~~fl~~Gri-~~~g~~~~~~~ 219 (231)
T COG3840 200 VVFLDNGRI-AAQGSTQELLS 219 (231)
T ss_pred eEEEeCCEE-EeeccHHHHhc
Confidence 999999998 67787665544
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=342.49 Aligned_cols=205 Identities=23% Similarity=0.329 Sum_probs=167.9
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~ 164 (692)
.+|+++|++++|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 46999999999998889999999999999999999999999999999999999999999998742 2499
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..||.+|+....... . .......+.++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~-~----------------------------------------~~~~~~~~~~~l~ 122 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA-E----------------------------------------RDQFQERIKWVYE 122 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc-C----------------------------------------hhHHHHHHHHHHH
Confidence 9999988877789999985321000 0 0000112223333
Q ss_pred hc-CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 005532 245 EL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~l-gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~ 320 (692)
.+ ++. +..++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|+ +.+.|||++|||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 123 LFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 33 232 34466789999999999999999999999999999999999999999988764 35899999999999999
Q ss_pred hhcCeEEEEecceEEEeccChHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
++||+++++++|++ .+.|...+
T Consensus 202 ~~~d~i~~l~~G~i-~~~~~~~~ 223 (237)
T PRK11614 202 KLADRGYVLENGHV-VLEDTGDA 223 (237)
T ss_pred hhCCEEEEEeCCEE-EeeCCHHH
Confidence 99999999999998 46676544
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=346.26 Aligned_cols=221 Identities=20% Similarity=0.372 Sum_probs=175.6
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (692)
+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 5 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 5 LLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred eEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 5999999999998899999999999999999999999999999999999999999999998742 24899
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..||.+|+......... ......+... +.. ..........+.++++.
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~-----~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~l~~ 140 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLK-----TGLFSGLLKT----PAF---------------RRAESEALDRAATWLER 140 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhcccc-----chhhhhhccc----ccc---------------ccchhHHHHHHHHHHHh
Confidence 99999888888999998632110000 0000000000 000 00000122456677888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~-~~~tvI~vsHd~~~l~~ 321 (692)
+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|. + .+.|||++||+++++..
T Consensus 141 ~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~ 219 (255)
T PRK11300 141 VGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMG 219 (255)
T ss_pred CChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHH
Confidence 8986 56789999999999999999999999999999999999999999999988774 2 38899999999999999
Q ss_pred hcCeEEEEecceEEEeccChHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+||+++++++|++. +.|...+
T Consensus 220 ~~d~i~~l~~g~i~-~~~~~~~ 240 (255)
T PRK11300 220 ISDRIYVVNQGTPL-ANGTPEE 240 (255)
T ss_pred hCCEEEEEECCeEE-ecCCHHH
Confidence 99999999999984 5565443
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=341.70 Aligned_cols=203 Identities=23% Similarity=0.334 Sum_probs=166.8
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~v 166 (692)
|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 468999999998899999999999999999999999999999999999999999999998632 259999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.+++..|+.+|+...+... .. .....+.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~-~~-----------------------------------------~~~~~~~~~l~~~ 118 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL-PR-----------------------------------------RSRKIPDEIYELF 118 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhc-Cc-----------------------------------------chHHHHHHHHHHH
Confidence 99998877789999985322100 00 0001122334444
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhh
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~ 322 (692)
++.....++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|.+ .+.|||+|||+++++..+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 119 PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 3212456788999999999999999999999999999999999999999999887753 378999999999999999
Q ss_pred cCeEEEEecceEEEeccChHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+|+++++|++. ..|..++
T Consensus 199 ~d~v~~l~~g~i~-~~~~~~~ 218 (230)
T TIGR03410 199 ADRYYVMERGRVV-ASGAGDE 218 (230)
T ss_pred CCEEEEEECCEEE-EECCHHH
Confidence 9999999999984 5566433
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=345.13 Aligned_cols=208 Identities=22% Similarity=0.292 Sum_probs=170.7
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~--------- 160 (692)
.++|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 3469999999999988899999999999999999999999999999999999985 89999987632
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..++|++|++.++. .|+.+|+...... .. ........
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~------------------------~~~~~~~~ 129 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HG------------------------ANKKDLDG 129 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------cC------------------------CCHHHHHH
Confidence 24999999988766 8999998522100 00 00011223
Q ss_pred HHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+|+. ....++++.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|
T Consensus 130 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiiv 209 (258)
T PRK14268 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIV 209 (258)
T ss_pred HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEE
Confidence 455667777763 2346788999999999999999999999999999999999999999999887753 37899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|||++++..+||+|++|++|++. +.|...+
T Consensus 210 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 239 (258)
T PRK14268 210 THNMQQAARISDYTGFFLMGELI-EFGQTRQ 239 (258)
T ss_pred ECCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999984 5565443
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=359.22 Aligned_cols=204 Identities=26% Similarity=0.423 Sum_probs=179.1
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeec
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~ 494 (692)
.+|+++||+++|++..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 4699999999999888999999999999999999999999999999999999999999999987652 45777
Q ss_pred ccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEe
Q 005532 495 QNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLD 568 (692)
|+ ..+++.+|+.+|+....... ....+.++++.+++. +..++++.+|||||||||+|||||+.+|++||||
T Consensus 83 Q~--~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLD 159 (353)
T TIGR03265 83 QS--YALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLD 159 (353)
T ss_pred CC--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 65 46778999999998654321 134578899999995 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 569 EPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||++||..+++.+.+.|++. +.|+|+||||.+++..+||+|++|++|++..+ |+.++..+
T Consensus 160 EP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~-g~~~~~~~ 224 (353)
T TIGR03265 160 EPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQV-GTPQEIYR 224 (353)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHHh
Confidence 999999999999999988754 56999999999999999999999999999865 55544433
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=349.21 Aligned_cols=209 Identities=22% Similarity=0.369 Sum_probs=174.6
Q ss_pred CcEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEE
Q 005532 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~ 164 (692)
.+++++|++++|+ ..++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 4589999999996 4569999999999999999999999999999999999999999999998742 2499
Q ss_pred EEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 165 ~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
|++|++. .++..||.+|+...... ...+.....+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 122 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN---------------------------------------LGLDEETVAHRVSSAL 122 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 33567999998421100 0011112234567788
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l 319 (692)
+.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||++||+++++
T Consensus 123 ~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 123 HMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 888986 567889999999999999999999999999999999999999999999887743 489999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHHHH
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
.++||+|+++++|++ .+.|..+++.
T Consensus 202 ~~~~drv~~l~~G~i-~~~g~~~~~~ 226 (277)
T PRK13652 202 PEMADYIYVMDKGRI-VAYGTVEEIF 226 (277)
T ss_pred HHhCCEEEEEECCeE-EEECCHHHHh
Confidence 999999999999998 4667765553
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=350.30 Aligned_cols=206 Identities=24% Similarity=0.385 Sum_probs=172.2
Q ss_pred cEEEEeEEEEeCC---eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 97 ~l~i~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
+|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 5999999999974 459999999999999999999999999999999999999999999998743 258
Q ss_pred EEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
+|++|+|. .++..||.+||...... ...+......++.++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 124 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLEN---------------------------------------KGIPHEEMKERVNEA 124 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHh---------------------------------------CCCCHHHHHHHHHHH
Confidence 99999984 55678999998532100 001111233456778
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~ 318 (692)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|+|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~ 203 (279)
T PRK13650 125 LELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE 203 (279)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH
Confidence 8889996 567899999999999999999999999999999999999999999999887642 48999999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+. .||+|+++++|++. ..|...++
T Consensus 204 ~~-~~dri~~l~~G~i~-~~g~~~~~ 227 (279)
T PRK13650 204 VA-LSDRVLVMKNGQVE-STSTPREL 227 (279)
T ss_pred HH-hCCEEEEEECCEEE-EECCHHHH
Confidence 94 79999999999974 56765443
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=359.60 Aligned_cols=203 Identities=28% Similarity=0.422 Sum_probs=178.3
Q ss_pred eEEEEeEEEEc-CCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeec
Q 005532 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFE 494 (692)
Q Consensus 424 ~l~~~~l~~~y-~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~ 494 (692)
+|+++|+++.| +++.+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++. .+|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 7788999999999999999999999999999999999999999999999987652 46777
Q ss_pred ccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEe
Q 005532 495 QNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLD 568 (692)
|+ ..+++.+||.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+|+|||||
T Consensus 83 Q~--~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLD 159 (356)
T PRK11650 83 QN--YALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFD 159 (356)
T ss_pred CC--ccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 75 4677899999999865431 11 23577899999995 6789999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 569 EPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||++||+.+++.|.+.|+++ +.|+|+||||.+++..+||+|++|++|++... |..++...
T Consensus 160 EP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~-g~~~~~~~ 224 (356)
T PRK11650 160 EPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQI-GTPVEVYE 224 (356)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEE-CCHHHHHh
Confidence 999999999999999888753 56999999999999999999999999999854 66665543
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=338.00 Aligned_cols=193 Identities=33% Similarity=0.464 Sum_probs=168.2
Q ss_pred EEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-----eeeeecc
Q 005532 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (692)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-----~~~~~~q 495 (692)
|+++|+++.|++ +++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 7899999999999999999999999999999999999999999999988664 2456666
Q ss_pred cchhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
.. .+.+..|+.+|+...... .....+.++++.+++. +..++++.+||||||||++|||||+.+|++|||||
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDE 157 (220)
T cd03293 81 QD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157 (220)
T ss_pred cc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECC
Confidence 53 455678999998754221 1124578899999995 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEE--CCEEEE
Q 005532 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQD 620 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~--~g~l~~ 620 (692)
||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|+ +|++..
T Consensus 158 Pt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 158 PFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEE
Confidence 99999999999999999764 4599999999999999999999999 798864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=347.41 Aligned_cols=205 Identities=29% Similarity=0.377 Sum_probs=176.0
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------ 489 (692)
..+|+++||++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 35799999999999889999999999999999999999999999999999999999999999886542
Q ss_pred -eeeecccchhhcCCCccHHHHHHHHhc---ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccC
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~ 561 (692)
.+|++|+ ..+.+..|+.+|+..... .+. ...+..+|+.+++. ...++++.+|||||||||+|||||+.+
T Consensus 85 ~i~~v~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~ 161 (269)
T PRK11831 85 RMSMLFQS--GALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALARAIALE 161 (269)
T ss_pred cEEEEecc--cccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 3466654 345567899999875321 111 12466789999995 567899999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|..+++..
T Consensus 162 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~~ 233 (269)
T PRK11831 162 PDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVA-HGSAQALQA 233 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999998865 4599999999999999999999999999974 577766643
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=347.30 Aligned_cols=216 Identities=21% Similarity=0.368 Sum_probs=177.4
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEECCCC------------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------------ 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~---~G~I~~~~~~------------ 160 (692)
++|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|..
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4699999999999889999999999999999999999999999999999999986 4999988742
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..++|++|++.+++..||.+|+.......... .. .... ........
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~----------~~--------------------~~~~-~~~~~~~~ 131 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPF----------WR--------------------TCFS-WFTREQKQ 131 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccc----------hh--------------------hhcc-cccHHHHH
Confidence 14899999998878889999985321000000 00 0000 00012234
Q ss_pred HHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 005532 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (692)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vs 313 (692)
++.++++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .|.|||+||
T Consensus 132 ~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~t 210 (262)
T PRK09984 132 RALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTL 210 (262)
T ss_pred HHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 667888899986 567889999999999999999999999999999999999999999999887753 478999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||++++..+||+|+++++|++ .+.|++.++
T Consensus 211 H~~~~~~~~~d~i~~l~~g~i-~~~g~~~~~ 240 (262)
T PRK09984 211 HQVDYALRYCERIVALRQGHV-FYDGSSQQF 240 (262)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHh
Confidence 999999999999999999998 577887653
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=334.84 Aligned_cols=193 Identities=28% Similarity=0.386 Sum_probs=169.9
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 47899999998889999999999999999999999999999999999999999999999987652 3466664
Q ss_pred chhhcCCCccHHHHHHHHhcc--ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCC
Q 005532 497 QAEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~~--~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~L 574 (692)
. .+.+..|+.+|+...... .....+..+++.+++. ...++++.+|||||||||+|||||+.+|++|||||||++|
T Consensus 81 ~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 157 (208)
T cd03268 81 P--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGL 157 (208)
T ss_pred C--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccC
Confidence 3 466688999998764321 2345678889999995 5678899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 575 DIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 575 D~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|+.+++.+.+.|.++ +.|||+||||.+++..+||++++|++|++..
T Consensus 158 D~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 158 DPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 999999999999865 4699999999999999999999999999863
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=358.52 Aligned_cols=204 Identities=27% Similarity=0.441 Sum_probs=179.0
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc--------eeeee
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~--------~~~~~ 493 (692)
+++|+++||++.|++..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++ ..+|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4579999999999988899999999999999999999999999999999999999999999998765 23577
Q ss_pred cccchhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
+|+ ..+++.+|+.+|+...... .....+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||
T Consensus 84 fQ~--~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 84 FQS--YALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred eCC--cccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 765 4678899999999875321 1124678899999995 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||++||+.+++.+.+.|+++ +.|+|+||||.+++..+||+|++|++|++... |..++..
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~-g~~~~~~ 225 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQI-GSPQELY 225 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHH
Confidence 9999999999999999988754 56999999999999999999999999999864 6655543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=351.47 Aligned_cols=208 Identities=21% Similarity=0.283 Sum_probs=170.1
Q ss_pred CcEEEEeEEEEeCCe-----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------- 160 (692)
..|+++|++++|+++ ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 359999999999764 49999999999999999999999999999999999999999999987632
Q ss_pred -----ceEEEEcccCcc-CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCccc
Q 005532 161 -----MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (692)
Q Consensus 161 -----~~i~~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (692)
..|+|++|++.. .+..|+.+|+...... . ......
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~ 125 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN---------------L------------------------GENKQE 125 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH---------------c------------------------CCCHHH
Confidence 248999999742 2346999998521100 0 000011
Q ss_pred HHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEE
Q 005532 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI 310 (692)
...++.++++.++++....++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .++|||
T Consensus 126 ~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 205 (289)
T PRK13645 126 AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205 (289)
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2234567788888854567889999999999999999999999999999999999999999999887642 488999
Q ss_pred EEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 311 ~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+||||++++..+||+|+++++|++. +.|...+
T Consensus 206 iisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 237 (289)
T PRK13645 206 MVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFE 237 (289)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999999974 4566543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=343.99 Aligned_cols=209 Identities=22% Similarity=0.297 Sum_probs=169.7
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~--------- 160 (692)
.++|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 3469999999999888899999999999999999999999999999999999987 48999997632
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++ ..||+||+....... . .........
T Consensus 85 ~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 125 (254)
T PRK14273 85 ELRRKIGMVFQTPNPF-LMSIYDNISYGPKIH---------------G-----------------------TKDKKKLDE 125 (254)
T ss_pred HHhhceEEEeeccccc-cCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHH
Confidence 2499999998876 589999985321000 0 000011223
Q ss_pred HHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+|+. ....++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|
T Consensus 126 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~ 205 (254)
T PRK14273 126 IVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIV 205 (254)
T ss_pred HHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 445556666652 1345778999999999999999999999999999999999999999999887754 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+++++..+||+|++|++|++. ..|...+
T Consensus 206 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 235 (254)
T PRK14273 206 THNMQQAGRISDRTAFFLNGCIE-EESSTDE 235 (254)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999984 4565443
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=341.40 Aligned_cols=201 Identities=28% Similarity=0.449 Sum_probs=173.0
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeecc
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q 495 (692)
+|+++||++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 489999999999889999999999999999999999999999999999999999999999886541 356666
Q ss_pred cchhhcCCCccHHHHHHHHhcc--------cc--HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 496 NQAEALDLDKTVLETVAEAAED--------WR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~--------~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
++ .+.+..|+.+|+...... +. ...+..+++.+++. ...++++.+|||||||||+|||||+.+|+||
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 158 (239)
T cd03296 82 HY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALARALAVEPKVL 158 (239)
T ss_pred CC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 43 455678999998754211 11 23467889999995 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|++|++.. .|..+++
T Consensus 159 llDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 224 (239)
T cd03296 159 LLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQ-VGTPDEV 224 (239)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-ecCHHHH
Confidence 999999999999999999999865 4599999999999999999999999999974 4665544
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=347.79 Aligned_cols=210 Identities=26% Similarity=0.368 Sum_probs=174.0
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
.+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 10 ~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred ceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 46999999999998889999999999999999999999999999999999999999999998743 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..|+.+|+........ ..+. ........++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~----------~~~~-------------------------~~~~~~~~~~~~~l~~ 134 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWH----------GALG-------------------------RFGAADREKVEEAISL 134 (265)
T ss_pred eccCCCCCCCccHHHHHHhCccccc----------cccc-------------------------CCCHHHHHHHHHHHHH
Confidence 9999877778899999853210000 0000 0001123456678888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~ 321 (692)
+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|.+ .+.|||+|||+++++..
T Consensus 135 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~ 213 (265)
T PRK10575 135 VGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAAR 213 (265)
T ss_pred cCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8885 467888999999999999999999999999999999999999999988877642 48999999999999999
Q ss_pred hcCeEEEEecceEEEeccChH
Q 005532 322 LCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~ 342 (692)
+||+|+++++|++ ...|...
T Consensus 214 ~~d~i~~l~~G~i-~~~~~~~ 233 (265)
T PRK10575 214 YCDYLVALRGGEM-IAQGTPA 233 (265)
T ss_pred hCCEEEEEECCeE-EEecCHH
Confidence 9999999999997 3556543
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=345.03 Aligned_cols=209 Identities=29% Similarity=0.393 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEEc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLS 167 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v~ 167 (692)
|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 789999999998899999999999999999999999999999999999999999999998742 2499999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++..||.+|+......... +. .........++.++++.+|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~-----------~~------------------------~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRS-----------LW------------------------AGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhh-----------hc------------------------cCCCHHHHHHHHHHHHHcC
Confidence 998777788999998532100000 00 0001112245667888888
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d 324 (692)
+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||++|||++++..+||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 127 LS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred cH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 577899999999999999999999999999999999999999999999887753 47899999999999999999
Q ss_pred eEEEEecceEEEeccChHH
Q 005532 325 KIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 325 ~i~~l~~G~~~~~~G~y~~ 343 (692)
+|+++++|++. ..|...+
T Consensus 206 ~i~~l~~G~i~-~~g~~~~ 223 (256)
T TIGR03873 206 HVVVLDGGRVV-AAGPPRE 223 (256)
T ss_pred EEEEEeCCCEE-EecCHHH
Confidence 99999999974 5676543
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=335.74 Aligned_cols=194 Identities=27% Similarity=0.473 Sum_probs=169.0
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 47899999999889999999999999999999999999999999999999999999999886542 3566664
Q ss_pred chhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 497 QAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
. .+.+..|+.+|+...... .. ...+.++++.+|+. ...++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP 157 (213)
T cd03301 81 Y--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157 (213)
T ss_pred h--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3 455678999998754211 11 23467889999995 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEe
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~ 621 (692)
|++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|+++.+
T Consensus 158 t~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999764 46999999999999999999999999999754
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=336.77 Aligned_cols=194 Identities=26% Similarity=0.402 Sum_probs=169.5
Q ss_pred eEEEEeEEEEcCCe----ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------e
Q 005532 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------P 490 (692)
Q Consensus 424 ~l~~~~l~~~y~~~----~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~ 490 (692)
+|+++|+++.|+++ ++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 47899999999876 7999999999999999999999999999999999999999999999886542 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+|++|+. .+++..|+.+|+...... .....+.++++.+|+. +..++++.+|||||||||+|||||+.+|++
T Consensus 81 ~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~i 157 (218)
T cd03266 81 GFVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPV 157 (218)
T ss_pred EEecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCE
Confidence 4566553 456678999998653221 1123577899999995 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|||||||++||+.+++.+.+.|.++ +.|||+||||.+++..+||++++|++|++..
T Consensus 158 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 158 LLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 9999999999999999999999876 4599999999999999999999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=341.03 Aligned_cols=200 Identities=27% Similarity=0.390 Sum_probs=171.8
Q ss_pred EEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------e
Q 005532 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------P 490 (692)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------------~ 490 (692)
|+++||++.|++ +.+|+++||+|.+|+++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 78999999999999999999999999999999999999999999999886542 2
Q ss_pred eeecccchhhcCCCccHHHHHHHHhc--------------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHH
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAr 556 (692)
+|++|+ ..+++..|+.+|+..... ......+.++++.+++. ...++++.+|||||||||+|||
T Consensus 81 ~~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~ 157 (241)
T cd03256 81 GMIFQQ--FNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIAR 157 (241)
T ss_pred EEEccc--CcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHHH
Confidence 455554 345567899999864321 11123577889999995 5678899999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++.. .|..+++
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 232 (241)
T cd03256 158 ALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVF-DGPPAEL 232 (241)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe-ecCHHHh
Confidence 999999999999999999999999999999864 4699999999999999999999999999974 4776665
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=340.62 Aligned_cols=200 Identities=30% Similarity=0.430 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------eeee
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~~~ 493 (692)
|+++|+++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 46899999999888999999999999999999999999999999999999999999999886531 3455
Q ss_pred cccchhhcCCCccHHHHHHHHhccc----------------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHH
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDW----------------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~----------------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAra 557 (692)
+|+ ..+.+..|+.+|+....... ....+.++++.+|+. ...++++.+|||||||||+||||
T Consensus 81 ~q~--~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~a 157 (236)
T cd03219 81 FQI--PRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIARA 157 (236)
T ss_pred ecc--cccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHHHH
Confidence 654 34667789999987542110 122467889999995 56789999999999999999999
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 558 l~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|+.+++
T Consensus 158 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 230 (236)
T cd03219 158 LATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIA-EGTPDEV 230 (236)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe-ecCHHHh
Confidence 99999999999999999999999999999865 3599999999999999999999999999974 4665544
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=342.31 Aligned_cols=201 Identities=28% Similarity=0.405 Sum_probs=172.6
Q ss_pred eEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------
Q 005532 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------- 489 (692)
+|+++||++.|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 478999999998 778999999999999999999999999999999999999999999999886542
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhc--------------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHH
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|+. .+.+..|+.+|+..... .....++.++++.+++. ...++++.+|||||||||+||
T Consensus 81 i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 81 IGMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred eEEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 34566543 45567899999864211 01123577889999995 567899999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++.++||++++|++|++. ..|+.+++
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 9999999999999999999999999999999865 459999999999999999999999999998 45766554
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=334.18 Aligned_cols=193 Identities=25% Similarity=0.445 Sum_probs=169.2
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------eeeecccch
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------PNYFEQNQA 498 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------~~~~~q~~~ 498 (692)
|+++|+++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~- 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER- 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC-
Confidence 47899999999888999999999999999999999999999999999999999999999987652 45666653
Q ss_pred hhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCC
Q 005532 499 EALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (692)
Q Consensus 499 ~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn 572 (692)
.+.+..|+.+|+...... . ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~ 157 (210)
T cd03269 80 -GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFS 157 (210)
T ss_pred -cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 455678999998754221 1 123577889999995 56788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 573 HLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 573 ~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
+||+.+++++.+.|+++ +.|||+||||.+++..+||++++|++|++..
T Consensus 158 ~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 158 GLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 99999999999999875 3599999999999999999999999999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=346.62 Aligned_cols=211 Identities=24% Similarity=0.315 Sum_probs=175.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
..|+++|++++|+++.+|+|+||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGL 85 (265)
T ss_pred cEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEE
Confidence 35999999999998889999999999999999999999999999999999999999999998742 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..|+.+|+.......... +. ........++.++++.
T Consensus 86 v~q~~~~~~~~tv~~~~~~~~~~~~~~----------~~-------------------------~~~~~~~~~~~~~l~~ 130 (265)
T PRK10253 86 LAQNATTPGDITVQELVARGRYPHQPL----------FT-------------------------RWRKEDEEAVTKAMQA 130 (265)
T ss_pred eeccCcCCCCCcHHHHHHhCccccccc----------cc-------------------------CCCHHHHHHHHHHHHH
Confidence 999998877889999985321000000 00 0000112356677888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~ 321 (692)
+|+. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++|||++++..
T Consensus 131 ~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~ 209 (265)
T PRK10253 131 TGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACR 209 (265)
T ss_pred cCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 8886 567899999999999999999999999999999999999999999999887743 47899999999999999
Q ss_pred hcCeEEEEecceEEEeccChHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+||+|+++++|++. ..|...+
T Consensus 210 ~~d~i~~l~~G~i~-~~g~~~~ 230 (265)
T PRK10253 210 YASHLIALREGKIV-AQGAPKE 230 (265)
T ss_pred hCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999974 5566443
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=342.93 Aligned_cols=208 Identities=25% Similarity=0.406 Sum_probs=171.0
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------------- 160 (692)
+|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 3 LLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred eEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 5999999999988889999999999999999999999999999999999999999999998643
Q ss_pred ---ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccH
Q 005532 161 ---MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (692)
Q Consensus 161 ---~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (692)
..|+|++|++. +.+..|+.+|+...+.. ... ......
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~--------------~~~------------------------~~~~~~ 124 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA--------------IGA------------------------RHYGNI 124 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHH--------------hcc------------------------cchHHH
Confidence 14899999974 33456788887421100 000 000012
Q ss_pred HHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEE
Q 005532 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (692)
Q Consensus 236 ~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~ 311 (692)
+..+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||+
T Consensus 125 ~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~ 204 (253)
T TIGR02323 125 RAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVII 204 (253)
T ss_pred HHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 345667888889864467889999999999999999999999999999999999999999999887642 4899999
Q ss_pred EecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 312 vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|||+++++..+||+++++++|++. ..|...+
T Consensus 205 vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~ 235 (253)
T TIGR02323 205 VTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQ 235 (253)
T ss_pred EeCCHHHHHHhcCEEEEEECCEEE-EECCHHH
Confidence 999999999999999999999984 4565443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=344.12 Aligned_cols=209 Identities=22% Similarity=0.305 Sum_probs=170.6
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~--------- 160 (692)
.+.|+++|+++.|++.++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|..
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 446999999999998889999999999999999999999999999999999986 589999998632
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++. .|+++|+...... .. ..+......
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~--------------~~------------------------~~~~~~~~~ 131 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRL--------------FE------------------------KLSRAEMDE 131 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhh--------------cC------------------------CCCHHHHHH
Confidence 25999999987755 8999998532100 00 001112233
Q ss_pred HHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+|+.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.+++++.+.|++ .+.|||+|
T Consensus 132 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 211 (260)
T PRK10744 132 RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIV 211 (260)
T ss_pred HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4556777777631 345778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+++++..+||+|+++++|++. ..|...+
T Consensus 212 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 241 (260)
T PRK10744 212 THNMQQAARCSDYTAFMYLGELI-EFGNTDT 241 (260)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999984 4465443
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=342.97 Aligned_cols=209 Identities=21% Similarity=0.318 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~----------- 160 (692)
.|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 59999999999988899999999999999999999999999999999999974 79999998742
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.+++..|+++|+...+.. .. .......++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~~ 125 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKL---------------NG-----------------------VRNKKDLDELV 125 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 2499999998887788999998532110 00 00011123345
Q ss_pred HHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++|++ .++|||+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 6677777763 1356788999999999999999999999999999999999999999999887753 3689999999
Q ss_pred CHHHHHhhcCeEEEEe------cceEEEeccChHHH
Q 005532 315 DRAFLDQLCTKIVETE------MGVSRTYEGNYSQY 344 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~------~G~~~~~~G~y~~~ 344 (692)
+++++..+||+|++++ +|++. +.|...++
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i~-~~~~~~~~ 240 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRLV-EIDDTEKI 240 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceEE-ecCCHHHH
Confidence 9999999999999996 68874 55665443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=337.65 Aligned_cols=190 Identities=32% Similarity=0.497 Sum_probs=163.9
Q ss_pred EEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------
Q 005532 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (692)
Q Consensus 425 l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------- 489 (692)
|+++||++.|++ +++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999986 78999999999999999999999999999999999999999999999886541
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhcc
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~ 560 (692)
.+|++|. ..+.+..|+.+|+...... . ....+.++++.+|+. ...++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (218)
T cd03255 81 RRHIGFVFQS--FNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIARALAN 157 (218)
T ss_pred hhcEEEEeec--cccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHHHHHcc
Confidence 3455554 3455678999998764321 1 123577899999995 55788999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 561 ~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
+|+||||||||++||+.+++.+.+.|.++ +.|||+||||.+++. +||++++|++|++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 158 DPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 99999999999999999999999999865 459999999999997 8999999999864
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=336.29 Aligned_cols=191 Identities=30% Similarity=0.423 Sum_probs=165.7
Q ss_pred eEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------
Q 005532 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------- 489 (692)
+|+++|+++.|+ ++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 478999999994 678999999999999999999999999999999999999999999999886542
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhc------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
.+|++|.. .+.+..|+.+|+..... ......+..+++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 81 IGVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred eEEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 24555543 45567899999876421 11124577899999995 56788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCE
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~ 617 (692)
+|||||||++||+.++..+.+.|+++ +.|||+||||.+++..+||++++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999875 4699999999999999999999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=343.40 Aligned_cols=194 Identities=26% Similarity=0.399 Sum_probs=169.5
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----eeeecccch
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQNQA 498 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----~~~~~q~~~ 498 (692)
+|+++|+++.|+++.+|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++|..
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~- 79 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE- 79 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC-
Confidence 488999999998888999999999999999999999999999999999999999999999887652 45666653
Q ss_pred hhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCC
Q 005532 499 EALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (692)
Q Consensus 499 ~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn 572 (692)
.+.+..|+.+|+...... . ....+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||+
T Consensus 80 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~ 157 (255)
T PRK11248 80 -GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFG 157 (255)
T ss_pred -ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 455678999998753211 1 123578899999995 56788999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEE--CCEEEE
Q 005532 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQD 620 (692)
Q Consensus 573 ~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~--~g~l~~ 620 (692)
+||+.++..+.+.|.++ +.|||+||||++++..+||+|++|+ +|++..
T Consensus 158 ~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~ 211 (255)
T PRK11248 158 ALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVE 211 (255)
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEE
Confidence 99999999999999875 4599999999999999999999998 488864
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=346.85 Aligned_cols=206 Identities=26% Similarity=0.391 Sum_probs=171.4
Q ss_pred cEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEE
Q 005532 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (692)
Q Consensus 97 ~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~ 164 (692)
+|+++|++++|+ +.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 378999999996 4679999999999999999999999999999999999999999999998742 2499
Q ss_pred EEcccCcc-CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 165 ~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
|++|+|.. ++..|+.+|+...... ...+.....+++.+++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPEN---------------------------------------LCLPPIEIRKRVDRAL 121 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999863 4667999998521100 0011122334566778
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~ 320 (692)
+.+|+. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 122 AEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred HHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 888986 56788999999999999999999999999999999999999999999988774 35899999999999995
Q ss_pred hhcCeEEEEecceEEEeccChHHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
.||+|+++++|++ .+.|...++
T Consensus 201 -~~d~v~~l~~G~i-~~~g~~~~~ 222 (274)
T PRK13644 201 -DADRIIVMDRGKI-VLEGEPENV 222 (274)
T ss_pred -hCCEEEEEECCEE-EEECCHHHH
Confidence 6999999999997 456765543
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=337.52 Aligned_cols=192 Identities=29% Similarity=0.457 Sum_probs=164.7
Q ss_pred EEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-----eeeeecccchhh
Q 005532 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAEA 500 (692)
Q Consensus 426 ~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-----~~~~~~q~~~~~ 500 (692)
+++||++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|+....
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 368999999888899999999999999999999999999999999999999999999998654 246777754221
Q ss_pred cCCCccHHHHHHHHhcc----------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 501 LDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 501 l~~~~tv~e~~~~~~~~----------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
..+..|+.+|+...... .....+..+++.+++. ...++++.+|||||||||+|||||+.+|++||||||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 12347999998764221 1123577899999995 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 571 TNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
|++||+.+++.+.+.|.++ +.|||+||||++++.++||+|++|++|.+
T Consensus 160 t~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~~~ 210 (213)
T cd03235 160 FAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210 (213)
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCcEe
Confidence 9999999999999999875 35999999999999999999999988643
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=350.50 Aligned_cols=203 Identities=23% Similarity=0.376 Sum_probs=179.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeeec
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~~ 494 (692)
.++++|++++|+++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 489999999999889999999999999999999999999999999999999999999999987642 45666
Q ss_pred ccchhhcCCCccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEe
Q 005532 495 QNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLD 568 (692)
|. ..+.+..|+.+|+....... . ...+..+++.+|+. +..++++..|||||||||+||+||+.+|++||||
T Consensus 82 q~--~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLD 158 (301)
T TIGR03522 82 EH--NPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILD 158 (301)
T ss_pred CC--CCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 65 34667889999987543211 1 24578899999995 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 569 EPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 569 EPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||+|||+.+++++.+.|+++ +.|||++||+++++.++||||++|++|++. +.|+.+++..
T Consensus 159 EPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 221 (301)
T TIGR03522 159 EPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIV-ADKKLDELSA 221 (301)
T ss_pred CCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHH
Confidence 999999999999999999877 469999999999999999999999999998 5688888754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=343.86 Aligned_cols=210 Identities=18% Similarity=0.279 Sum_probs=171.7
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~--------- 160 (692)
++.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~ 96 (267)
T PRK14235 17 EIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVV 96 (267)
T ss_pred CceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchH
Confidence 4579999999999988899999999999999999999999999999999999975 89999998732
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.+++ .|+.+|+...... .... ........
T Consensus 97 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~~----------------------~~~~~~~~ 138 (267)
T PRK14235 97 ELRARVGMVFQKPNPFP-KSIYENVAYGPRI---------------HGLA----------------------RSKAELDE 138 (267)
T ss_pred HHhhceEEEecCCCCCC-CcHHHHHHHHHHh---------------cccc----------------------cchHHHHH
Confidence 24899999988765 5999998532100 0000 00011234
Q ss_pred HHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|
T Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiiv 218 (267)
T PRK14235 139 IVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIV 218 (267)
T ss_pred HHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 4567777888742 245778999999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|||++++..+||+++++++|++. ..|...+
T Consensus 219 tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 248 (267)
T PRK14235 219 THSMQQAARVSQRTAFFHLGNLV-EVGDTEK 248 (267)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999984 4565443
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=341.56 Aligned_cols=209 Identities=20% Similarity=0.327 Sum_probs=170.5
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~I~~~~~~---------- 160 (692)
..|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|..
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 35999999999998889999999999999999999999999999999999986 4 68999998732
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.+++..|+.+|+...+... . ..+....+.+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~ 124 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN---------------G-----------------------RVNRSEADEI 124 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHhc---------------C-----------------------CCCHHHHHHH
Confidence 24999999998877889999985321100 0 0000112234
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivs 204 (252)
T PRK14256 125 VESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204 (252)
T ss_pred HHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 556677777642 235677899999999999999999999999999999999999999999887753 368999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+++++..+||+++++++|++. ..|...+
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 233 (252)
T PRK14256 205 HNMQQAARVSDYTAFFYMGDLV-ECGETKK 233 (252)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999974 4455443
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=338.76 Aligned_cols=205 Identities=24% Similarity=0.375 Sum_probs=172.4
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
|+++|++++|++.. .|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 2 l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 79 (232)
T PRK10771 2 LKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQE 79 (232)
T ss_pred eEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecc
Confidence 78999999998644 38999999999999999999999999999999999999999998743 359999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+.+|+...+... .. .....+.++.++++.+|+.
T Consensus 80 ~~~~~~~tv~e~l~~~~~~~-------------~~--------------------------~~~~~~~~~~~~l~~~~l~ 120 (232)
T PRK10771 80 NNLFSHLTVAQNIGLGLNPG-------------LK--------------------------LNAAQREKLHAIARQMGIE 120 (232)
T ss_pred cccccCCcHHHHHhcccccc-------------cC--------------------------CCHHHHHHHHHHHHHcCcH
Confidence 98877889999985321000 00 0001134566788888986
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .++|||+||||++++..+||+
T Consensus 121 -~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~ 199 (232)
T PRK10771 121 -DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPR 199 (232)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCE
Confidence 567899999999999999999999999999999999999999999988887643 478999999999999999999
Q ss_pred EEEEecceEEEeccChHHHH
Q 005532 326 IVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~ 345 (692)
|+++++|++. +.|++.++.
T Consensus 200 i~~l~~g~i~-~~g~~~~~~ 218 (232)
T PRK10771 200 SLVVADGRIA-WDGPTDELL 218 (232)
T ss_pred EEEEECCEEE-EeCCHHHHH
Confidence 9999999984 667765543
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=353.08 Aligned_cols=208 Identities=24% Similarity=0.347 Sum_probs=171.8
Q ss_pred cEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC----CCccEEEECCCCc-------
Q 005532 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------- 161 (692)
Q Consensus 97 ~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~----p~~G~I~~~~~~~------- 161 (692)
.|+++|+++.|+. .++|+||||+|++||+++|||+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999976 469999999999999999999999999999999999997 4899999987431
Q ss_pred -------eEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCc
Q 005532 162 -------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (692)
Q Consensus 162 -------~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (692)
.|+|++|++. +.+..|+.+++...+.. ......
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~--------------------------------------~~~~~~ 124 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKV--------------------------------------HQGGNK 124 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHH--------------------------------------hcCCCH
Confidence 4999999984 56677888876421100 000111
Q ss_pred ccHHHHHHHHhhhcCCCc--cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cCC
Q 005532 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (692)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~~ 306 (692)
.+..+++.++|+.+|+.+ ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|+ +.+
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 223456778899999963 34678899999999999999999999999999999999999999999888764 258
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 307 ~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.|+|+||||++.+..+||+|++|.+|++. ..|...+
T Consensus 205 ~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~ 240 (326)
T PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHD 240 (326)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHH
Confidence 99999999999999999999999999984 4565433
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=339.42 Aligned_cols=203 Identities=25% Similarity=0.385 Sum_probs=175.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------ee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------~~ 491 (692)
+|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 478999999999888999999999999999999999999999999999999999999999986542 24
Q ss_pred eecccchhhcCCCccHHHHHHHHhc---cc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
|++|+ ..+.+..|+.+|+..... .. ....+.++++.+|+. ...++++.+|||||||||+|||||+.+|+|
T Consensus 81 ~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~l 157 (240)
T PRK09493 81 MVFQQ--FYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKL 157 (240)
T ss_pred EEecc--cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 55554 345567899999865321 11 123467899999995 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||||++||+.+++.+.++|.++ +.|||+||||++++..+||++++|++|++. +.|+++++.+
T Consensus 158 lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 225 (240)
T PRK09493 158 MLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIA-EDGDPQVLIK 225 (240)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-eeCCHHHHhc
Confidence 9999999999999999999999765 469999999999999999999999999998 4577776644
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=336.95 Aligned_cols=197 Identities=26% Similarity=0.449 Sum_probs=167.1
Q ss_pred eEEEEeEEEEcCCe----ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~----~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+|+++||++.|+++ ++|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 47899999999865 7999999999999999999999999999999999999999999999886541
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc----ccH---HH-HHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED----WRI---DD-IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~----~~~---~~-~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
.+|++|+....+.+..|+.+|+...... ... .. +.++++.+++.....++++.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 3456665422355678999998653211 111 12 247889999854567889999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 161 ALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred hcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 9999999999999999999999999999765 4699999999999999999999999999864
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=347.35 Aligned_cols=207 Identities=24% Similarity=0.371 Sum_probs=173.9
Q ss_pred CcEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 96 ~~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
++|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 46999999999975 469999999999999999999999999999999999999999999998743 259
Q ss_pred EEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
+|++|++. .++..||.+|+...... . .........++.++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 124 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLEN---------------I------------------------GVPREEMVERVDQA 124 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhh---------------C------------------------CCCHHHHHHHHHHH
Confidence 99999984 55678999998532100 0 00111223456778
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~ 318 (692)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 125 LRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 8888986 578889999999999999999999999999999999999999999999887753 38999999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+.. ||+|+++++|++ .+.|...++
T Consensus 204 ~~~-~d~i~~l~~G~i-~~~g~~~~~ 227 (279)
T PRK13635 204 AAQ-ADRVIVMNKGEI-LEEGTPEEI 227 (279)
T ss_pred HHc-CCEEEEEECCEE-EEECCHHHH
Confidence 975 999999999997 466776544
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=373.95 Aligned_cols=207 Identities=32% Similarity=0.542 Sum_probs=180.1
Q ss_pred ceEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhc
Q 005532 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (692)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l 501 (692)
.+|+++||+++|+ ++++|+|+||+|++|+++||+|||||||||||++|+|+++|++|+|.+++. ...+|++|+. .+
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~v~Q~~--~~ 79 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPG-IKVGYLPQEP--QL 79 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccC--CC
Confidence 4799999999998 778999999999999999999999999999999999999999999998753 4567888764 45
Q ss_pred CCCccHHHHHHHHhc-----------------cc-c------------------------HHHHHHHHhhcCCCcccccc
Q 005532 502 DLDKTVLETVAEAAE-----------------DW-R------------------------IDDIKGLLGRCNFKADMLDR 539 (692)
Q Consensus 502 ~~~~tv~e~~~~~~~-----------------~~-~------------------------~~~~~~~L~~~~l~~~~~~~ 539 (692)
.+..|+.+|+..... .. . ...+..+++.+|+. . .++
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~-~~~ 157 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-P-WDA 157 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-c-ccC
Confidence 567899999864210 00 0 02345577788884 2 588
Q ss_pred cCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEEEECCEEE
Q 005532 540 KVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (692)
Q Consensus 540 ~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~ 619 (692)
++.+|||||||||+|||+|+.+|+||||||||||||+.++++|.+.|.++++|||+||||++++..+||+|++|++|++.
T Consensus 158 ~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i~ 237 (552)
T TIGR03719 158 DVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRGI 237 (552)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999998
Q ss_pred EecCChhHHHHHhHH
Q 005532 620 DYAGDYNYYLEKNLD 634 (692)
Q Consensus 620 ~~~g~~~~~~~~~~~ 634 (692)
.|.|+|++|.+++..
T Consensus 238 ~~~g~~~~~~~~~~~ 252 (552)
T TIGR03719 238 PWEGNYSSWLEQKEK 252 (552)
T ss_pred EecCCHHHHHHHHHH
Confidence 899999999886543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=334.93 Aligned_cols=193 Identities=23% Similarity=0.316 Sum_probs=165.9
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc-------eEEEEcc
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQ 168 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~-------~i~~v~Q 168 (692)
++|+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|... .++|++|
T Consensus 10 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q 89 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGH 89 (214)
T ss_pred ceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeec
Confidence 469999999999988899999999999999999999999999999999999999999999987432 4999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..|+.+|+..... +. ....+..+.++++.+|+
T Consensus 90 ~~~~~~~~t~~e~l~~~~~---------------~~---------------------------~~~~~~~~~~~l~~~~l 127 (214)
T PRK13543 90 LPGLKADLSTLENLHFLCG---------------LH---------------------------GRRAKQMPGSALAIVGL 127 (214)
T ss_pred CcccccCCcHHHHHHHHHH---------------hc---------------------------CCcHHHHHHHHHHHcCC
Confidence 9887777899999742110 00 00112345567788888
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCe
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~~d~ 325 (692)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.+.|||++|||++++.++||+
T Consensus 128 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~ 206 (214)
T PRK13543 128 A-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTR 206 (214)
T ss_pred h-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcce
Confidence 6 45788899999999999999999999999999999999999999999988775 3589999999999999999999
Q ss_pred EEEEec
Q 005532 326 IVETEM 331 (692)
Q Consensus 326 i~~l~~ 331 (692)
+++++.
T Consensus 207 i~~l~~ 212 (214)
T PRK13543 207 MLTLEA 212 (214)
T ss_pred EEEEee
Confidence 998863
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=345.76 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=172.5
Q ss_pred cEEEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------ceE
Q 005532 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKI 163 (692)
Q Consensus 97 ~l~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------~~i 163 (692)
+|+++|++++|++ .++|+|+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 3789999999974 579999999999999999999999999999999999999999999998743 248
Q ss_pred EEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
+|++|++. .++..||.+|+...... . .........++.++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~----------------~-----------------------~~~~~~~~~~~~~~ 121 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLN----------------L-----------------------GLSKEEVEKRVKEA 121 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHH----------------c-----------------------CCCHHHHHHHHHHH
Confidence 99999973 33557999998521100 0 00011223456678
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l 319 (692)
++.+|+. ...++++.+|||||+||++|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+||||++++
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8889986 567899999999999999999999999999999999999999999999887753 489999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHHH
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
..+||+|+++++|++. ..|..+++
T Consensus 201 ~~~~d~i~~l~~G~i~-~~g~~~~~ 224 (275)
T PRK13639 201 PVYADKVYVMSDGKII-KEGTPKEV 224 (275)
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999984 56776544
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-39 Score=390.77 Aligned_cols=185 Identities=23% Similarity=0.297 Sum_probs=131.4
Q ss_pred cHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHc---cCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCC
Q 005532 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDV 307 (692)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~---~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~ 307 (692)
.+.+++ ++|+.+|+.....++++.+|||||+|||+||+||+ .+|++|||||||+|||+.+++.|.++|+ +.|.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 445566 57888999632368999999999999999999997 6999999999999999999999988764 4689
Q ss_pred eEEEEecCHHHHHhhcCeEEEEe------cceEEEeccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 005532 308 PMVIISHDRAFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (692)
Q Consensus 308 tvI~vsHd~~~l~~~~d~i~~l~------~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 381 (692)
|||+|||+++++ .+||+|++|. +|++ .+.|...++...... .. ..+...+...
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~i-v~~Gtpeel~~~~s~-----t~---------~~l~~~l~~~----- 922 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYL-LASCSPEELIHLHTP-----TA---------KALRPYLSSP----- 922 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEE-EEeCCHHHHHhccCc-----hH---------HHHHHHhhcc-----
Confidence 999999999999 7999999995 5665 466765443210000 00 0000000000
Q ss_pred chhhhHHHHHHHHHHHHhhhcccccccceeeecCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCC
Q 005532 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (692)
Q Consensus 382 ~~~~~~~~~~l~rl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGs 461 (692)
. ..+ .+. |+.. .. +...++++.+.....|++++|+|++|++++|+|+|||
T Consensus 923 --------------~-----~~~------~~~-~~~~---~~-l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGs 972 (1809)
T PRK00635 923 --------------Q-----ELP------YLP-DPSP---KP-PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSAS 972 (1809)
T ss_pred --------------c-----ccc------ccc-cccc---cc-cccceEEEeccccccccceeEEecCCcEEEEECCCCC
Confidence 0 000 000 1100 11 4455667776655679999999999999999999999
Q ss_pred cHHHHHHHH
Q 005532 462 GKSTLLKLI 470 (692)
Q Consensus 462 GKSTLl~~L 470 (692)
|||||+..+
T Consensus 973 GKStL~~~~ 981 (1809)
T PRK00635 973 GKHSLVFDI 981 (1809)
T ss_pred ChhHHHHHH
Confidence 999977655
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=343.79 Aligned_cols=209 Identities=21% Similarity=0.284 Sum_probs=168.1
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~--------- 160 (692)
.++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 19 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (268)
T PRK14248 19 EHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVV 98 (268)
T ss_pred CceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHH
Confidence 346999999999998889999999999999999999999999999999999864 789999987632
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++. .|+.+|+...+... .. ......+.
T Consensus 99 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~~-----------------------~~~~~~~~ 139 (268)
T PRK14248 99 NLRREIGMVFQKPNPFP-KSIYNNITHALKYA---------------GE-----------------------RRKSVLDE 139 (268)
T ss_pred HHhccEEEEecCCccCc-ccHHHHHHHHHHhc---------------CC-----------------------CcHHHHHH
Confidence 25999999988765 59999985321100 00 00001122
Q ss_pred HHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
.+.+++..+++.. ...++++.+||||||||++|||||+.+|++|||||||+|||+.+++++.++|++ .+.|||++
T Consensus 140 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 219 (268)
T PRK14248 140 IVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIV 219 (268)
T ss_pred HHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 3444555556531 245778999999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|||++++..+||+|++|++|++. +.|...+
T Consensus 220 tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 249 (268)
T PRK14248 220 THNMQQALRVSDRTAFFLNGDLV-EYDQTEQ 249 (268)
T ss_pred EeCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999984 5566543
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=337.11 Aligned_cols=204 Identities=27% Similarity=0.431 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
|.++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 468999999998899999999999999999999999999999999999999999999998742 369999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.++...|+.+|+...+.. . ....+...+++..+++.+|+.
T Consensus 81 ~~~~~~~t~~~nl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (232)
T cd03300 81 YALFPHLTVFENIAFGLRL---------------K------------------------KLPKAEIKERVAEALDLVQLE 121 (232)
T ss_pred cccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCc
Confidence 9887778999997532110 0 001112234566788888996
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
+..++.+.+|||||+|||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||++||+++++..+||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 122 -GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred -hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999887753 489999999999999999999
Q ss_pred EEEEecceEEEeccChH
Q 005532 326 IVETEMGVSRTYEGNYS 342 (692)
Q Consensus 326 i~~l~~G~~~~~~G~y~ 342 (692)
|+++++|++. +.|...
T Consensus 201 i~~l~~G~~~-~~~~~~ 216 (232)
T cd03300 201 IAVMNKGKIQ-QIGTPE 216 (232)
T ss_pred EEEEECCEEE-ecCCHH
Confidence 9999999985 455543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=341.58 Aligned_cols=206 Identities=23% Similarity=0.352 Sum_probs=175.7
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------ 489 (692)
+..|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 34699999999999889999999999999999999999999999999999999999999999986542
Q ss_pred -----------eeeecccchhhcCCCccHHHHHHHHhc---cc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHH
Q 005532 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (692)
Q Consensus 490 -----------~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (692)
.+|++|+ ..+.+..|+.+|+..... .. ....+.++++.+|+.....++++.+||||||||
T Consensus 83 ~~~~~~~~~~~i~~v~q~--~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qr 160 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQH--FNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQR 160 (257)
T ss_pred cchHHHHHhhceEEEecC--cccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHH
Confidence 3455554 345567899999864321 11 123577899999996433478899999999999
Q ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 552 v~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||||++|++|+++. .|+++++
T Consensus 161 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 239 (257)
T PRK10619 161 VSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGAPEQL 239 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHh
Confidence 99999999999999999999999999999999998765 4699999999999999999999999999984 5777766
Q ss_pred HH
Q 005532 629 LE 630 (692)
Q Consensus 629 ~~ 630 (692)
..
T Consensus 240 ~~ 241 (257)
T PRK10619 240 FG 241 (257)
T ss_pred hh
Confidence 43
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=337.64 Aligned_cols=192 Identities=21% Similarity=0.339 Sum_probs=163.0
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
++|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 6 ~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 85 (225)
T PRK10247 6 PLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSY 85 (225)
T ss_pred ceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEE
Confidence 36999999999998889999999999999999999999999999999999999999999998742 35999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.++. .|+.||+..... +. .......++.++++.
T Consensus 86 ~~q~~~l~~-~tv~enl~~~~~---------------~~--------------------------~~~~~~~~~~~~l~~ 123 (225)
T PRK10247 86 CAQTPTLFG-DTVYDNLIFPWQ---------------IR--------------------------NQQPDPAIFLDDLER 123 (225)
T ss_pred Eeccccccc-ccHHHHHHhHHh---------------hc--------------------------CCChHHHHHHHHHHH
Confidence 999988765 599999752100 00 000012345577888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~ 321 (692)
+|+.+...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 124 ~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~- 202 (225)
T PRK10247 124 FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN- 202 (225)
T ss_pred cCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-
Confidence 88864467889999999999999999999999999999999999999999999887753 4889999999999996
Q ss_pred hcCeEEEEe
Q 005532 322 LCTKIVETE 330 (692)
Q Consensus 322 ~~d~i~~l~ 330 (692)
.||++++++
T Consensus 203 ~~d~i~~l~ 211 (225)
T PRK10247 203 HADKVITLQ 211 (225)
T ss_pred hCCEEEEEe
Confidence 699999996
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=334.54 Aligned_cols=198 Identities=31% Similarity=0.461 Sum_probs=170.3
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------ceEEEEcccCc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------~~i~~v~Q~~~ 171 (692)
|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 468999999998889999999999999999999999999999999999999999999998742 36999999998
Q ss_pred cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcc
Q 005532 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (692)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (692)
+++..|+++|+..... +. .. ...++.++++.+|+. .
T Consensus 81 ~~~~~t~~~~~~~~~~---------------~~------------------------~~----~~~~~~~~l~~~~l~-~ 116 (223)
T TIGR03740 81 LYENLTARENLKVHTT---------------LL------------------------GL----PDSRIDEVLNIVDLT-N 116 (223)
T ss_pred ccccCCHHHHHHHHHH---------------Hc------------------------CC----CHHHHHHHHHHcCCc-H
Confidence 8778899999742110 00 00 023456778888886 5
Q ss_pred ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEE
Q 005532 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (692)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~~d~i~~ 328 (692)
..++++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|+ +.+.|||++|||++++..+||+|++
T Consensus 117 ~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 6788899999999999999999999999999999999999999999988775 3478999999999999999999999
Q ss_pred EecceEEEeccC
Q 005532 329 TEMGVSRTYEGN 340 (692)
Q Consensus 329 l~~G~~~~~~G~ 340 (692)
+++|++. ..|.
T Consensus 197 l~~g~i~-~~~~ 207 (223)
T TIGR03740 197 ISEGVLG-YQGK 207 (223)
T ss_pred EeCCEEE-EecC
Confidence 9999974 4454
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=319.32 Aligned_cols=201 Identities=27% Similarity=0.388 Sum_probs=174.8
Q ss_pred eEEEEeEEEEcCCee-cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeee
Q 005532 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~-~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~ 493 (692)
||++.+++++|++.. +++||||+++.|+++||.|+|||||||+|++|++++.|++|.|.++|.+.. ++..
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999999865 899999999999999999999999999999999999999999999987652 1222
Q ss_pred cccchhhcCCCccHHHHHHHHhcccc------HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDWR------IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~~------~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
. -...+...+|+.||+......+. ..++.++.+.|++ .+..++++..||-|+||||+|||||+++|++|||
T Consensus 81 ~--~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l-~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vl 157 (245)
T COG4555 81 F--GERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVHDPSILVL 157 (245)
T ss_pred c--CCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhCh-HHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEE
Confidence 2 12356678999999987654322 2357788888999 4678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||||||||+.++..+.+++.+. +.+||+.||++.+++.+||+|++|+.|+++ +.|+.+..
T Consensus 158 DEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv-~~gs~~~l 220 (245)
T COG4555 158 DEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVV-LEGSIEAL 220 (245)
T ss_pred cCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEE-EcCCHHHH
Confidence 9999999999999999998865 459999999999999999999999999998 56776544
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=358.24 Aligned_cols=202 Identities=29% Similarity=0.451 Sum_probs=176.4
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeecc
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q 495 (692)
.|+++|++++|+++.+|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 589999999999888999999999999999999999999999999999999999999999886542 457776
Q ss_pred cchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 496 NQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
+ ..+++.+|+.+|+...... .. ...+.++++.+++. ...++++.+|||||||||+|||||+.+|+||||||
T Consensus 83 ~--~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDE 159 (369)
T PRK11000 83 S--YALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDE 159 (369)
T ss_pred C--cccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 5 3567789999999764321 11 23578899999995 66899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||++||+.+++.+.+.|+++ +.|+|+||||++++..+||+|++|++|++..+ |+.+++.
T Consensus 160 Pts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~-g~~~~i~ 222 (369)
T PRK11000 160 PLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQV-GKPLELY 222 (369)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHH
Confidence 99999999999999888754 56999999999999999999999999999854 6665553
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=339.57 Aligned_cols=209 Identities=18% Similarity=0.270 Sum_probs=170.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCC---CCC--CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEP--DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~---~~p--~~G~I~~~~~~---------- 160 (692)
++|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+ ++| ++|+|.++|..
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 359999999999988899999999999999999999999999999999997 455 58999998742
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.++. .|+.+|+...+.. ... ......+..
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~---------------~~~-----------------------~~~~~~~~~ 122 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRV---------------NGV-----------------------KDNAFIRQR 122 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHH---------------cCC-----------------------CcHHHHHHH
Confidence 14999999987765 6999998532110 000 000012344
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.+ ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .++|||+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 123 VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 566777788742 245778899999999999999999999999999999999999999999888754 468999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||++++..+||+|+++++|++ .+.|...++
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~-~~~~~~~~~ 232 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEM-VEYDDTKKI 232 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEE-EEECCHHHH
Confidence 999999999999999999998 456765444
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=356.84 Aligned_cols=206 Identities=26% Similarity=0.432 Sum_probs=179.9
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eee
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNY 492 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~ 492 (692)
..++|+++|+++.|++..+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~ 90 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNT 90 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 445799999999999888999999999999999999999999999999999999999999999987652 456
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
++|+ ..+++.+||.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+|+|||
T Consensus 91 vfQ~--~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llL 167 (375)
T PRK09452 91 VFQS--YALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLL 167 (375)
T ss_pred EecC--cccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7765 4678899999999865321 11 23577889999995 67899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||++||..+++.|.+.|+++ +.|+|+||||.+++..+||+|++|++|++... |..+++..
T Consensus 168 LDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~i~~ 234 (375)
T PRK09452 168 LDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQD-GTPREIYE 234 (375)
T ss_pred EeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHHh
Confidence 99999999999999999988754 56999999999999999999999999999864 55555443
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=338.00 Aligned_cols=202 Identities=27% Similarity=0.420 Sum_probs=175.2
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------eee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~~ 492 (692)
+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 689999999998888999999999999999999999999999999999999999999999986542 335
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc------------c--cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED------------W--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~------------~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
++|. ..+.+..|+.+|+...... . ....+..+++.+|+. ...++++.+|||||+|||+|||||
T Consensus 82 ~~q~--~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~laral 158 (242)
T TIGR03411 82 KFQK--PTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIGMLL 158 (242)
T ss_pred eccc--cccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHH
Confidence 5554 3466778999998764210 0 123577889999995 567899999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+.+|++|||||||++||+.++..+.+.|+++. .|||+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 159 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 159 MQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred hcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEE-eeCCHHHHh
Confidence 99999999999999999999999999998763 59999999999999999999999999998 457777664
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-40 Score=335.19 Aligned_cols=197 Identities=26% Similarity=0.422 Sum_probs=169.4
Q ss_pred eEEEEeEEEEc-CCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------
Q 005532 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y-~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------- 489 (692)
+|+++|+++.| +++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 47899999999 6678999999999999999999999999999999999999999999999886541
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
.+|++|.. .+.+..|+.+|+..... ... ...+.++++.+++. ...++++.+|||||||||+|||||+.+|+
T Consensus 81 i~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 81 IGMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred eEEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 24556543 45567899999875421 111 22467889999995 56788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecC
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g 623 (692)
+|||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|++|+++.-.|
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGGVG 220 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccCCC
Confidence 99999999999999999999998865 4699999999999999999999999999875444
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=354.44 Aligned_cols=202 Identities=28% Similarity=0.403 Sum_probs=174.2
Q ss_pred eEEEEeEEEEcC----CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~----~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
||+++||+++|+ ++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 367999999999999999999999999999999999999999999999986542
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhcc
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~ 560 (692)
.+|++|+. .+.+..|+.+|+...... .. ...+..+++.+|+. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~ 157 (343)
T PRK11153 81 RRQIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIARALAS 157 (343)
T ss_pred hcCEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHc
Confidence 34666643 466778999999764321 11 23567899999995 56789999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 561 ~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|++.. .|..++..
T Consensus 158 ~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~-~g~~~~~~ 229 (343)
T PRK11153 158 NPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVE-QGTVSEVF 229 (343)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHH
Confidence 99999999999999999999999999865 4599999999999999999999999999984 46655543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=359.49 Aligned_cols=204 Identities=25% Similarity=0.427 Sum_probs=178.2
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
++|+++||+++|+++.+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++. .+|
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999986542 356
Q ss_pred ecccchhhcCCCccHHHHHHHHhc----c------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCC
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAE----D------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~----~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p 562 (692)
+.|. ..+.+.+|+.+++..... . .....+.++++.+++. +..++++.+|||||||||+|||||+++|
T Consensus 82 v~q~--~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P 158 (402)
T PRK09536 82 VPQD--TSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVA-QFADRPVTSLSGGERQRVLLARALAQAT 158 (402)
T ss_pred EccC--CCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 6654 356678999999875421 1 1123578899999995 6789999999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 563 ~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+||||||||+|||+.++..+.++|+++ +.|||++|||++++.++|||+++|++|++.. .|+.+++..
T Consensus 159 ~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~-~G~~~ev~~ 228 (402)
T PRK09536 159 PVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRA-AGPPADVLT 228 (402)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-ecCHHHHhC
Confidence 999999999999999999999998865 4599999999999999999999999999984 588777654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=332.85 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=160.4
Q ss_pred EEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceEEE
Q 005532 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAF 165 (692)
Q Consensus 100 i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i~~ 165 (692)
++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4789999998889999999999999999999999999999999999999999999998743 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..|++||+...... . .........++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY---------------K------------------------KLSKKEKREKKKEALEK 121 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887788999998531100 0 00011223456678888
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~ 322 (692)
+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+|||+++++ .+
T Consensus 122 ~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 199 (206)
T TIGR03608 122 VGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQ 199 (206)
T ss_pred cCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh
Confidence 8985 567888999999999999999999999999999999999999999999988754 488999999999977 57
Q ss_pred cCeEEEE
Q 005532 323 CTKIVET 329 (692)
Q Consensus 323 ~d~i~~l 329 (692)
||+|+++
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999864
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=339.21 Aligned_cols=207 Identities=20% Similarity=0.304 Sum_probs=167.1
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~----------- 160 (692)
.|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999988899999999999999999999999999999999999763 69999998632
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.++. .|+.+|+...... ... .......+++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~---------------~~~-----------------------~~~~~~~~~~ 123 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRT---------------HGI-----------------------KDKKKLDEIV 123 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cCC-----------------------CCHHHHHHHH
Confidence 25999999987765 8999998532100 000 0000122334
Q ss_pred HHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.++++.+++.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 45555665531 245778999999999999999999999999999999999999999999888753 3789999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|++++..+||+|+++++|++. ..|...+
T Consensus 204 ~~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 231 (250)
T PRK14240 204 NMQQASRISDKTAFFLNGEIV-EFGDTVD 231 (250)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999985 4455433
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=339.77 Aligned_cols=206 Identities=20% Similarity=0.292 Sum_probs=168.0
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~----------- 160 (692)
+|+++|++|+|+++++|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 4 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 4 IISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred eEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 5899999999998889999999999999999999999999999999999997 479999988742
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.++. .||++|+...+.. ... ........++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~~ 124 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKI---------------AGV-----------------------KDKELIDQRV 124 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHH---------------cCC-----------------------CCHHHHHHHH
Confidence 24999999988764 7999998532110 000 0000112334
Q ss_pred HHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.++++.+|+. ....++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+|||
T Consensus 125 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH 204 (251)
T PRK14251 125 EESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTH 204 (251)
T ss_pred HHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 5566666763 1345778999999999999999999999999999999999999999999888754 3689999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
+++++..+||+|+++++|++. ..|...
T Consensus 205 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 231 (251)
T PRK14251 205 NLQQAGRISDQTAFLMNGDLI-EAGPTE 231 (251)
T ss_pred CHHHHHhhcCEEEEEECCEEE-EeCCHH
Confidence 999999999999999999985 345543
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=350.93 Aligned_cols=211 Identities=20% Similarity=0.359 Sum_probs=173.2
Q ss_pred CCcEEEEeEEEEeC----CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC---ccEEEECCCC-------
Q 005532 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~---~G~I~~~~~~------- 160 (692)
++.|+++|+++.|+ ..++|+||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~ 89 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEK 89 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHH
Confidence 45799999999995 246999999999999999999999999999999999999996 9999998743
Q ss_pred -------ceEEEEcccC--ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC
Q 005532 161 -------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (692)
Q Consensus 161 -------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
..|+|++|++ .+.+..|+.+++...+.. . ....
T Consensus 90 ~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~---------------~-----------------------~~~~ 131 (330)
T PRK09473 90 ELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML---------------H-----------------------KGMS 131 (330)
T ss_pred HHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH---------------h-----------------------cCCC
Confidence 2599999998 466778998887522100 0 0011
Q ss_pred cccHHHHHHHHhhhcCCCc--cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cC
Q 005532 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~ 305 (692)
..+...++.++|+.+|+++ ...++++.+|||||+|||+|||||+.+|+|||+||||++||+.++..+.++|+ +.
T Consensus 132 ~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 211 (330)
T PRK09473 132 KAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREF 211 (330)
T ss_pred HHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHc
Confidence 1122345667788888863 23467899999999999999999999999999999999999999999888764 34
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 306 ~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+.|+|+||||++.+..+||+|++|.+|++. ..|...+.
T Consensus 212 g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~~i 249 (330)
T PRK09473 212 NTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNARDV 249 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 899999999999999999999999999984 55765443
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=346.74 Aligned_cols=205 Identities=25% Similarity=0.342 Sum_probs=174.7
Q ss_pred eEEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
+|+++||++.|+. +.+|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 5899999999973 25999999999999999999999999999999999999999999999987642
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
.+|+.|+....+. ..|+.+|+......+ ....+.++++.+++.....++++..|||||||||+|||+|
T Consensus 81 ~~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 3577776433343 469999997653211 1234678899999954567899999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+.+|+||||||||++||+.++..|.+.|.++ +.|||+||||++++..+||||++|++|++. +.|..+++..
T Consensus 160 ~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 233 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHII-SCGTPSDVFQ 233 (288)
T ss_pred HhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EECCHHHHHc
Confidence 9999999999999999999999999998764 469999999999999999999999999998 4587777654
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=351.83 Aligned_cols=214 Identities=21% Similarity=0.300 Sum_probs=172.2
Q ss_pred CcEEEEeEEEEeC----CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC----CCccEEEECCCC-------
Q 005532 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSN------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~----p~~G~I~~~~~~------- 160 (692)
++|+++|++++|+ ...+|+||||+|.+||+++|||+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 3699999999994 3579999999999999999999999999999999999997 589999998742
Q ss_pred -------ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC
Q 005532 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (692)
Q Consensus 161 -------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
..|+|++|++. +.+..||.+++...+... . ... . + ...
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~-~-----------~~~---------~---------~---~~~ 128 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGW-T-----------YKG---------R---------W---WQR 128 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhh-h-----------ccc---------c---------c---ccc
Confidence 25999999986 445678988874211000 0 000 0 0 000
Q ss_pred cccHHHHHHHHhhhcCCCc--cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----C
Q 005532 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~--~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~ 305 (692)
......++.++|+.+|+.+ ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++.++.++|++ .
T Consensus 129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 0122356778899999963 246788999999999999999999999999999999999999999999887753 5
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 306 ~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|.|||+||||++++..+||+|++|.+|++ ...|...+
T Consensus 209 g~tii~itHdl~~v~~~~dri~vm~~G~i-ve~g~~~~ 245 (330)
T PRK15093 209 NTTILLISHDLQMLSQWADKINVLYCGQT-VETAPSKE 245 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEE-EEECCHHH
Confidence 89999999999999999999999999998 45666443
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=368.28 Aligned_cols=243 Identities=23% Similarity=0.389 Sum_probs=182.6
Q ss_pred HHHHhHHHHHHhhhccCccccccccccccCCCCCCCCCCCcEEEEeEEEEeCCee---ceeeeeEEEECCcEEEEEcCCC
Q 005532 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT---VLKDVTWEVKKGEKVGLVGVNG 133 (692)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ls~~y~~~~---vL~~vsl~i~~Ge~~~lvG~NG 133 (692)
..+.++-.+.+++|+..++.+..... . ...+. ...+.|+++||+|+|+.+| ||+|+||+|+|||+||||||||
T Consensus 429 s~lmkgvGAs~rvFel~dr~P~i~~~-G--~~~p~-~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSG 504 (716)
T KOG0058|consen 429 SELMKGVGASERVFELMDRKPRIPLT-G--TLAPD-HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSG 504 (716)
T ss_pred HHHHHhcchHHHHHHHhccCCCCCCC-C--ccccc-cccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCC
Confidence 34555555667777766554322222 1 11111 3456799999999998764 9999999999999999999999
Q ss_pred ccHHHHHHHHHCCCCCCccEEEECCCCc----------eEEEEcccCccCCCCCHHHHHHhhhHH----HHHHHHHHHHH
Q 005532 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EMEIAGKLERV 199 (692)
Q Consensus 134 sGKSTLl~~L~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~----~~~~~~~~~~~ 199 (692)
+||||+.++|..+|+|++|+|.++|.+. .||+|.|+|-+ ++.||+|||..+... ++..+++..+.
T Consensus 505 sGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~t~e~i~~AAk~ANa 583 (716)
T KOG0058|consen 505 SGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNATDEEIEAAAKMANA 583 (716)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCCCHHHHHHHHHHhCh
Confidence 9999999999999999999999998653 59999999987 789999999765431 11111111111
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCC
Q 005532 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (692)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~ 279 (692)
.+++..+.+ |..+.. ..+..+||||||||+||||||+++|.
T Consensus 584 ----------h~FI~~~p~----------------------------gY~T~V-GEkG~qLSGGQKQRIAIARALlr~P~ 624 (716)
T KOG0058|consen 584 ----------HEFITNFPD----------------------------GYNTVV-GEKGSQLSGGQKQRIAIARALLRNPR 624 (716)
T ss_pred ----------HHHHHhCcc----------------------------cccccc-CCccccccchHHHHHHHHHHHhcCCC
Confidence 111111110 222222 33478999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHH
Q 005532 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 280 lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
||||||.||+||.++...+.+.|.+ .+.|||+|.|+++.+.+ +|+|+++++|++. -.|++++.+
T Consensus 625 VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl 690 (716)
T KOG0058|consen 625 VLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELL 690 (716)
T ss_pred EEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHh
Confidence 9999999999999999998888753 47999999999999975 9999999999984 457665443
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-40 Score=338.78 Aligned_cols=208 Identities=22% Similarity=0.280 Sum_probs=168.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCC--CC---CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EP---DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p---~~G~I~~~~~~---------- 160 (692)
++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+. +| ++|+|.++|..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 3699999999999888999999999999999999999999999999999985 36 59999998732
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.++. .||.+|+...... ... .........
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 124 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRL---------------KGI-----------------------KDKQVLDEA 124 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHH---------------cCC-----------------------CcHHHHHHH
Confidence 25999999988765 8999998532100 000 000012234
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 204 (252)
T PRK14239 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204 (252)
T ss_pred HHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 445566666531 245778999999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||++++..+||+|+++++|++. +.|...+
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 233 (252)
T PRK14239 205 RSMQQASRISDRTGFFLDGDLI-EYNDTKQ 233 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999984 5565544
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=340.18 Aligned_cols=206 Identities=22% Similarity=0.342 Sum_probs=174.1
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCcc-----ce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----VL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~-----~~-------- 489 (692)
++|+++|+++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 47999999999988889999999999999999999999999999999999999999999998865 31
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHh---ccc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAA---EDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~---~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|++|+....+.+..++.+++.... ... ....+.++++.+++.....++++.+|||||||||+|||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lar 164 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIAR 164 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHH
Confidence 35666664334556678888875421 111 12346788999999544678999999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||+.+|+||||||||++||+.+++++.+.|+++ +.|||+||||++++..+||+|++|++|+++. .|..+++.
T Consensus 165 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 240 (258)
T PRK11701 165 NLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE-SGLTDQVL 240 (258)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999998753 5699999999999999999999999999974 46655543
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=335.94 Aligned_cols=205 Identities=30% Similarity=0.427 Sum_probs=173.3
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
|+++|+++.|++. +|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4689999999865 8999999999999999999999999999999999999999999998742 269999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+.+|+...+.. . ....+....++.++++.+|+.
T Consensus 80 ~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 120 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKK---------------R------------------------KVDKKEIERKVLEIAEMLGID 120 (235)
T ss_pred CccCCCccHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 8887788999998532100 0 001112334566788888986
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||++||+++++..+||+
T Consensus 121 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 121 -HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred -hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 567888999999999999999999999999999999999999999999887753 389999999999999999999
Q ss_pred EEEEecceEEEeccChHHH
Q 005532 326 IVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~ 344 (692)
|+++++|++. ..|.+++.
T Consensus 200 i~~l~~G~i~-~~~~~~~~ 217 (235)
T cd03299 200 VAIMLNGKLI-QVGKPEEV 217 (235)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999984 55665443
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-40 Score=331.03 Aligned_cols=192 Identities=27% Similarity=0.391 Sum_probs=167.5
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeeecc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~~q 495 (692)
|+++|+++.|+++++|+++||+|++| +++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998888999999999999 99999999999999999999999999999999986542 345665
Q ss_pred cchhhcCCCccHHHHHHHHhcc-----c-cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 496 NQAEALDLDKTVLETVAEAAED-----W-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~-----~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
+. .+++..|+.+|+...... . ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||||
T Consensus 80 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 156 (211)
T cd03264 80 EF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDE 156 (211)
T ss_pred CC--cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 43 456678999998753211 1 123577889999995 56788999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 570 PTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
||++||+.+++++.+.|+++ +.|||+||||++++.++||++++|++|++..
T Consensus 157 Pt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 157 PTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999876 4699999999999999999999999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=335.40 Aligned_cols=200 Identities=26% Similarity=0.400 Sum_probs=171.8
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------eeee
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~~~ 493 (692)
|+++||++.|+++.+|+++||+|.+|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 47899999999889999999999999999999999999999999999999999999999886531 3455
Q ss_pred cccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
+|.. .+.+..|+.+|+...... .. ...+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 157 (232)
T cd03218 81 PQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLL 157 (232)
T ss_pred cCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 5543 456678999998754211 11 23467889999995 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||||++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|+.+++
T Consensus 158 DEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 220 (232)
T cd03218 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLA-EGTPEEI 220 (232)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEE-EeCHHHh
Confidence 9999999999999999998765 4599999999999999999999999999974 5666554
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=336.36 Aligned_cols=201 Identities=27% Similarity=0.409 Sum_probs=172.5
Q ss_pred eEEEEeEEEEcCCe----ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~----~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+|+++|++++|+++ ++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 47899999999876 8999999999999999999999999999999999999999999999987542
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhcc
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~ 560 (692)
.+|++|+ ..+++..|+.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.
T Consensus 81 ~~~i~~~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~ 157 (233)
T cd03258 81 RRRIGMIFQH--FNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIARALAN 157 (233)
T ss_pred HhheEEEccC--cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhc
Confidence 2355554 3455678999998754211 11 23577899999995 56788999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 561 ~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
+|++|||||||++||+.++..+.+.|.++ +.|||+||||.+++..+||++++|++|++.. .|+.+++
T Consensus 158 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 228 (233)
T cd03258 158 NPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVE-EGTVEEV 228 (233)
T ss_pred CCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999999999865 4599999999999999999999999999984 4665544
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-40 Score=339.97 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=170.2
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~I~~~~~~--------- 160 (692)
.++|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~ 89 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLV 89 (259)
T ss_pred CceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHH
Confidence 346999999999998889999999999999999999999999999999999987 3 58999988642
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++. .|+++|+..... . .. .........
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~--~-------------~~-----------------------~~~~~~~~~ 130 (259)
T PRK14274 90 ELRKNIGMVFQKGNPFP-QSIFDNVAYGPR--I-------------HG-----------------------TKNKKKLQE 130 (259)
T ss_pred HHhhceEEEecCCcccc-cCHHHHHHhHHH--h-------------cC-----------------------CCCHHHHHH
Confidence 24999999988765 499999852110 0 00 000011223
Q ss_pred HHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+|+.+ ...++++.+||||||||++|||||+.+|+||||||||++||+.++..+.++|++ .+.|||+|
T Consensus 131 ~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 210 (259)
T PRK14274 131 IVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIV 210 (259)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4556677777642 245788999999999999999999999999999999999999999999887754 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+++++..+||+|+++++|++. ..|...++
T Consensus 211 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 241 (259)
T PRK14274 211 THNMQQAARVSDQTAFFYMGELV-ECNDTNKM 241 (259)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999999999984 45665443
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=337.17 Aligned_cols=197 Identities=28% Similarity=0.401 Sum_probs=170.0
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
.|+++|+++.|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 589999999998888999999999999999999999999999999999999999999999986542 3466
Q ss_pred cccchhhcCCCccHHHHHHHHhc--cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
+|+. .+. ..|+.+|+..... .....++.++++.+++.....++++.+|||||||||+|||||+.+|++|||||||
T Consensus 83 ~q~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 159 (241)
T PRK14250 83 FQQP--HLF-EGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPT 159 (241)
T ss_pred ecCc--hhc-hhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 6653 333 3699999864321 1123457788999999545678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecC
Q 005532 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAG 623 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g 623 (692)
++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++.....
T Consensus 160 ~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 215 (241)
T PRK14250 160 SALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAK 215 (241)
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999998764 5699999999999999999999999999986533
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=339.12 Aligned_cols=202 Identities=26% Similarity=0.431 Sum_probs=173.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------------- 489 (692)
+|+++||++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 699999999999888999999999999999999999999999999999999999999999876432
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHh---cccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
.+|++|+ ..+.+..|+.+|+.... .... ...+.++++.+|+. ...++++.+|||||||||+|||||
T Consensus 83 ~~~~i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al 159 (250)
T PRK11264 83 LRQHVGFVFQN--FNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARAL 159 (250)
T ss_pred hhhhEEEEecC--cccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHH
Confidence 2455554 34556789999986531 1111 23467889999995 557889999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||.+++..+||+|++|++|++.. .|+.+++.
T Consensus 160 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 232 (250)
T PRK11264 160 AMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE-QGPAKALF 232 (250)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999998765 4699999999999999999999999999974 46666554
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=337.07 Aligned_cols=208 Identities=24% Similarity=0.320 Sum_probs=170.7
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEECCCC----------ceE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~---p~~G~I~~~~~~----------~~i 163 (692)
+++++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..|
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4889999999998889999999999999999999999999999999999974 699999998743 259
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.++. .|+++|+..... +.... ........++.+++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~---------------~~~~~----------------------~~~~~~~~~~~~~l 123 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPK---------------LHGMI----------------------KNKDEEEALVVDCL 123 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHh---------------hcCcc----------------------cChHHHHHHHHHHH
Confidence 99999998765 699999853210 00000 00011234456777
Q ss_pred hhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHH
Q 005532 244 PELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (692)
Q Consensus 244 ~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~ 318 (692)
+.+|+.+ ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++.++.+.|++ .++|||+|||++++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8888842 235778899999999999999999999999999999999999999999888753 48899999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+..+||+|+++++|++. ..|...+
T Consensus 204 ~~~~~d~i~~l~~G~i~-~~g~~~~ 227 (246)
T PRK14269 204 GKRVADYTAFFHLGELI-EFGESKE 227 (246)
T ss_pred HHhhCcEEEEEECCEEE-EECCHHH
Confidence 99999999999999984 4565433
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=353.69 Aligned_cols=203 Identities=28% Similarity=0.418 Sum_probs=177.6
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeecc
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q 495 (692)
+|+++|+++.|+++.+|+++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 489999999999888999999999999999999999999999999999999999999999987652 456666
Q ss_pred cchhhcCCCccHHHHHHHHhcc------cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 496 NQAEALDLDKTVLETVAEAAED------WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~------~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
+ ..+++.+|+.+|+...... .. ...+.++|+.+++. +..++++.+|||||||||+|||||+.+|+||
T Consensus 82 ~--~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalArAL~~~P~ll 158 (353)
T PRK10851 82 H--YALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALARALAVEPQIL 158 (353)
T ss_pred C--cccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 5 4577889999999865321 11 23577899999995 6789999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||++||+.+++.+.+.|+++ +.|+|+||||++++..+||+|++|++|++..+ |..++...
T Consensus 159 LLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~-g~~~~i~~ 226 (353)
T PRK10851 159 LLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQA-GTPDQVWR 226 (353)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-cCHHHHHh
Confidence 999999999999999999888754 46999999999999999999999999999854 66655543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=346.38 Aligned_cols=203 Identities=26% Similarity=0.356 Sum_probs=173.8
Q ss_pred EEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 425 l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999974 46999999999999999999999999999999999999999999999987541
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc----cc--HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED----WR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~----~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.+|++|+....+. ..|+.+|+...... +. ...+.++++.+++.....++++.+|||||||||+|||||+
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 3577776432343 57999999754321 11 1356788999999645678999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++|++. +.|+.+++.
T Consensus 162 ~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~ 234 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVF-LQGTPREIF 234 (290)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999999998765 469999999999999999999999999998 457766654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=342.17 Aligned_cols=207 Identities=22% Similarity=0.346 Sum_probs=174.3
Q ss_pred ceEEEEeEEEEcCC---------eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----
Q 005532 423 SVVTIKNLEFGYED---------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~---------~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---- 489 (692)
++|+++||+++|+. +++|+++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 57999999999962 46999999999999999999999999999999999999999999999886542
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHhc---ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|++|+....+.+..|+.+++..... ... .+.+.++++.+++.....++++.+|||||||||+|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 162 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLAR 162 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHH
Confidence 346666543234566788888754221 111 2357789999999545668889999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++. ..|+++++..
T Consensus 163 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 163 ALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred HHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 999999999999999999999999999998864 469999999999999999999999999997 4677777654
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-40 Score=344.79 Aligned_cols=204 Identities=23% Similarity=0.362 Sum_probs=172.7
Q ss_pred eEEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
+|+++|+++.|++ +.+|+++||+|.+||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4889999999974 46999999999999999999999999999999999999999999999987541
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhc--cc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
.+|++|+....+. ..|+.+|+..... .. ....+.++++.+|+.....++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral 160 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVM 160 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHH
Confidence 3466665322233 5799999875321 11 1234778899999953567899999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 161 ~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 233 (287)
T PRK13641 161 AYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIK-HASPKEIF 233 (287)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999999999876 3599999999999999999999999999974 56666554
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=347.36 Aligned_cols=204 Identities=24% Similarity=0.300 Sum_probs=172.7
Q ss_pred eEEEEeEEEEcCCe-----ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc----------
Q 005532 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (692)
Q Consensus 424 ~l~~~~l~~~y~~~-----~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~---------- 488 (692)
+|+++||++.|++. .+|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 48999999999753 599999999999999999999999999999999999999999999975432
Q ss_pred ------------------------eeeeecccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCccccc
Q 005532 489 ------------------------LPNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLD 538 (692)
Q Consensus 489 ------------------------~~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~ 538 (692)
..+|++|++...+ +..|+.+|+...... . ....+.++++.+|+..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQL-FEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCccccc-ccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 1357777643334 357999999754321 1 12357889999999646789
Q ss_pred ccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEEC
Q 005532 539 RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (692)
Q Consensus 539 ~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~ 615 (692)
+++.+|||||||||+|||+|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||||++|++
T Consensus 161 ~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~ 240 (305)
T PRK13651 161 RSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKD 240 (305)
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999998765 56999999999999999999999999
Q ss_pred CEEEEecCChhHHH
Q 005532 616 SNLQDYAGDYNYYL 629 (692)
Q Consensus 616 g~l~~~~g~~~~~~ 629 (692)
|+++. .|..++..
T Consensus 241 G~i~~-~g~~~~~~ 253 (305)
T PRK13651 241 GKIIK-DGDTYDIL 253 (305)
T ss_pred CEEEE-ECCHHHHh
Confidence 99975 46555543
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=344.32 Aligned_cols=205 Identities=26% Similarity=0.404 Sum_probs=174.1
Q ss_pred eEEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
.|+++||++.|++ +++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999974 46999999999999999999999999999999999999999999999886542
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCc-ccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.+|++|+....+ +..|+.+|+...... .. ...+.++++.+|+.. ...++++.+|||||||||+|||||+
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~ 160 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVA 160 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHH
Confidence 357777643223 357999999754221 11 234778999999952 4578999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||||++|++|++.. .|..+++..
T Consensus 161 ~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~-~g~~~~~~~ 234 (287)
T PRK13637 161 MEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCEL-QGTPREVFK 234 (287)
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 999999999999999999999999999765 4599999999999999999999999999985 577666543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=331.44 Aligned_cols=190 Identities=35% Similarity=0.515 Sum_probs=162.9
Q ss_pred EEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 426 ~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
+++|+++.|++ +.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 78999999999999999999999999999999999999999999999886542 3466
Q ss_pred cccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
+|... ...+..|+.+|+...... . ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llll 158 (211)
T cd03225 81 FQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLL 158 (211)
T ss_pred ecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 66431 123468999998754211 1 123567889999995 567899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCE
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSN 617 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~ 617 (692)
||||++||+.+++++.+.|.++ +.|||+||||++++..+||+|++|++|+
T Consensus 159 DEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 159 DEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999876 3599999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=332.91 Aligned_cols=197 Identities=26% Similarity=0.393 Sum_probs=170.3
Q ss_pred EEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeee
Q 005532 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYF 493 (692)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~ 493 (692)
|+++||++.|++ +++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999987 78999999999999999999999999999999999999999999999987642 3566
Q ss_pred cccchhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
.|+. .+.+..|+.+|+..... ... ...+.++++.+++. +..++++.+|||||||||+|||||+.+|++|||
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 157 (220)
T cd03263 81 PQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157 (220)
T ss_pred cCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 6643 45567899999875421 111 23567889999995 567889999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCCh
Q 005532 568 DEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~ 625 (692)
||||++||+.+++.+.+.|+++. .|||++|||++++..+||++++|++|++.. .|+.
T Consensus 158 DEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~ 216 (220)
T cd03263 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRC-IGSP 216 (220)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEe-cCCH
Confidence 99999999999999999998763 599999999999999999999999999984 3543
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=331.82 Aligned_cols=191 Identities=28% Similarity=0.441 Sum_probs=165.9
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------eee
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PNY 492 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------~~~ 492 (692)
|+++||++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 47899999999888999999999999999999999999999999999999999999999986541 245
Q ss_pred ecccchhhcCCCccHHHHHHHHh---cccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
++|. ..+.+..|+.+|+.... ..+. ...+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|
T Consensus 81 ~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~ll 157 (213)
T cd03262 81 VFQQ--FNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVM 157 (213)
T ss_pred Eecc--cccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEE
Confidence 5554 34556789999986532 1111 23467889999995 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
||||||++||+.+++++.+.|+++ +.|||++|||.+++.++||+|++|++|++
T Consensus 158 llDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 158 LFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999865 45999999999999999999999998864
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=334.73 Aligned_cols=201 Identities=27% Similarity=0.401 Sum_probs=172.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeeec
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~~ 494 (692)
+|+++|++++|+++.+|+++||+|.+|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 478999999999889999999999999999999999999999999999999999999999886542 34666
Q ss_pred ccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEe
Q 005532 495 QNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLD 568 (692)
|+. .+.+..|+.+|+...... . ....+.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||
T Consensus 81 q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 157 (236)
T TIGR03864 81 QQP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLD 157 (236)
T ss_pred CCC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 643 455678999998654221 1 123567889999995 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 569 EPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 569 EPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||++||+.+++.+.+.|.++ +.|||+||||++++.. ||++++|++|++.. .|..+++.
T Consensus 158 EP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~-~~~~~~~~ 220 (236)
T TIGR03864 158 EPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLA-DGAAAELR 220 (236)
T ss_pred CCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEE-eCCHHHHH
Confidence 999999999999999998764 4599999999999975 99999999999974 46655543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=331.43 Aligned_cols=189 Identities=31% Similarity=0.458 Sum_probs=161.8
Q ss_pred eEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceEEEEc
Q 005532 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (692)
Q Consensus 102 ~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i~~v~ 167 (692)
|++|+|++..+ |+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 81 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81 (214)
T ss_pred eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEe
Confidence 89999998766 99999999 9999999999999999999999999999999998632 2599999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++..|+.+|+...... ......+.++.++++.+|
T Consensus 82 q~~~~~~~~t~~~~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~ 120 (214)
T cd03297 82 QQYALFPHLNVRENLAFGLKR-----------------------------------------KRNREDRISVDELLDLLG 120 (214)
T ss_pred cCCccCCCCCHHHHHHHHHhh-----------------------------------------CCHHHHHHHHHHHHHHcC
Confidence 999887788999998522100 000011234567788888
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~ 323 (692)
+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++..+|
T Consensus 121 l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~ 199 (214)
T cd03297 121 LD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLA 199 (214)
T ss_pred CH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhc
Confidence 86 467888999999999999999999999999999999999999999999887743 3889999999999999999
Q ss_pred CeEEEEecceEE
Q 005532 324 TKIVETEMGVSR 335 (692)
Q Consensus 324 d~i~~l~~G~~~ 335 (692)
|+++++++|++.
T Consensus 200 d~i~~l~~G~i~ 211 (214)
T cd03297 200 DRIVVMEDGRLQ 211 (214)
T ss_pred CEEEEEECCEEE
Confidence 999999999873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=349.46 Aligned_cols=209 Identities=23% Similarity=0.408 Sum_probs=178.4
Q ss_pred CCceEEEEeEEEEcCC-------------eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCcc
Q 005532 421 GRSVVTIKNLEFGYED-------------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~-------------~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~ 487 (692)
.+++|+++||++.|+. ..+++|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3468999999999962 468999999999999999999999999999999999999999999999876
Q ss_pred ce-------------eeeecccchhhcCCCccHHHHHHHHhc----ccc----HHHHHHHHhhcCCCcccccccCCCCCH
Q 005532 488 VL-------------PNYFEQNQAEALDLDKTVLETVAEAAE----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSG 546 (692)
Q Consensus 488 ~~-------------~~~~~q~~~~~l~~~~tv~e~~~~~~~----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSg 546 (692)
+. .+|++|+....+++..|+.+++..... ... ...+.++|+.+++.....++++.+|||
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSg 164 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSG 164 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCH
Confidence 42 457777654457788999999875321 111 234678899999965567999999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEec
Q 005532 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (692)
Q Consensus 547 Gqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~ 622 (692)
||+|||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+.++..+||+|++|++|++++.
T Consensus 165 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~- 243 (331)
T PRK15079 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVEL- 243 (331)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-
Confidence 9999999999999999999999999999999999999988754 56999999999999999999999999999864
Q ss_pred CChhHHHH
Q 005532 623 GDYNYYLE 630 (692)
Q Consensus 623 g~~~~~~~ 630 (692)
|..+++..
T Consensus 244 g~~~~i~~ 251 (331)
T PRK15079 244 GTYDEVYH 251 (331)
T ss_pred cCHHHHHc
Confidence 66555543
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=337.81 Aligned_cols=208 Identities=20% Similarity=0.309 Sum_probs=166.7
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~I~~~~~~----------- 160 (692)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 489999999999889999999999999999999999999999999999999874 8999998732
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.+++..|+.+|+...+... ... ......+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---------------~~~-----------------------~~~~~~~~~ 125 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLA---------------GIR-----------------------DRDHLMEVA 125 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhc---------------CCC-----------------------CHHHHHHHH
Confidence 25999999998877789999985322100 000 000011222
Q ss_pred HHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.+++..+++. ....++++.+|||||+||++|||||+.+|+||||||||++||+.+++++.++|++ .++|||++||
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 2333333331 1245778999999999999999999999999999999999999999999888754 3689999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+++++..+||+|++|++|++. +.|...+
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 233 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLV-EHGPTDQ 233 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999974 5566544
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-40 Score=330.93 Aligned_cols=196 Identities=26% Similarity=0.371 Sum_probs=166.0
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
++++|+++.|+. ++.|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 468999999974 5789999999999999999999999999999999999999999998743 259999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+.+|+...+.... ......+.++.++++.+|+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l~ 119 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGL---------------------------------------KLNAEQQEKVVDAAQQVGIA 119 (213)
T ss_pred CccCCCCcHHHHHHhHhhccC---------------------------------------CccHHHHHHHHHHHHHcCcH
Confidence 988778899999853211000 00001134556778888986
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
+..++++.+|||||+||++|||||+.+|+||||||||++||+.+++.+.++|++ .+.|||+|||+++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 120 -DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred -HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 567888999999999999999999999999999999999999999998887643 478999999999999999999
Q ss_pred EEEEecceEE
Q 005532 326 IVETEMGVSR 335 (692)
Q Consensus 326 i~~l~~G~~~ 335 (692)
++++++|++.
T Consensus 199 v~~l~~g~i~ 208 (213)
T TIGR01277 199 IAVVSQGKIK 208 (213)
T ss_pred EEEEECCeEE
Confidence 9999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=340.15 Aligned_cols=210 Identities=19% Similarity=0.274 Sum_probs=171.3
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~--------- 160 (692)
...|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 346999999999998899999999999999999999999999999999999996 589999988732
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.+++ .||.+|+...+... . .......+.
T Consensus 98 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 138 (267)
T PRK14237 98 EMRKHIGMVFQRPNPFA-KSIYENITFALERA---------------G-----------------------VKDKKVLDE 138 (267)
T ss_pred HHhcceEEEecCCcccc-ccHHHHHHhHHHhc---------------C-----------------------CCCHHHHHH
Confidence 25999999987765 69999985321100 0 000111233
Q ss_pred HHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+|+.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 139 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~ 218 (267)
T PRK14237 139 IVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIV 218 (267)
T ss_pred HHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 4556677777632 345788999999999999999999999999999999999999999999887753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+++++..+||+|+++++|++. ..|...++
T Consensus 219 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14237 219 THNMQQAARASDYTAFFYLGDLI-EYDKTRNI 249 (267)
T ss_pred ecCHHHHHHhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 55665443
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=343.33 Aligned_cols=206 Identities=25% Similarity=0.393 Sum_probs=171.2
Q ss_pred CcEEEEeEEEEeC--CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 96 ~~l~i~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
.+|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 4579999999999999999999999999999999999999999999998743 249
Q ss_pred EEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
+|++|++. .++..||.+|+...... . ..+......++.++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 126 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN---------------K------------------------KVPPKKMKDIIDDL 126 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999974 45678999998532100 0 00111223456678
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~-~~tvI~vsHd~~~ 318 (692)
++.+|+. ...++.+.+|||||+||++|||||+.+|+||||||||+|||+.+++.+.++|++ . +.|||++||++++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 127 AKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 8888986 567889999999999999999999999999999999999999999999888753 3 4899999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+. .||+|+++++|++. ..|...+
T Consensus 206 ~~-~~d~v~~l~~G~i~-~~g~~~~ 228 (271)
T PRK13632 206 AI-LADKVIVFSEGKLI-AQGKPKE 228 (271)
T ss_pred Hh-hCCEEEEEECCEEE-EecCHHH
Confidence 96 79999999999984 4565443
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=331.28 Aligned_cols=191 Identities=29% Similarity=0.391 Sum_probs=165.1
Q ss_pred EEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------------e
Q 005532 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------P 490 (692)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------------~ 490 (692)
|+++|+++.|++ +.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999974 68999999999999999999999999999999999999999999999886542 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+|++|+ ..+.+..|+.+|+...... . ....+.++++.+++. ...++++.+||||||||++|||||+.+|+|
T Consensus 81 ~~v~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (214)
T cd03292 81 GVVFQD--FRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTI 157 (214)
T ss_pred EEEecC--chhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCE
Confidence 455554 3466678999998764321 1 123567889999995 567889999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
|||||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||++++|++|++
T Consensus 158 lllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 158 LIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999875 46999999999999999999999999864
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=338.42 Aligned_cols=198 Identities=27% Similarity=0.385 Sum_probs=165.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCC
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~ 175 (692)
++|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ ...++|++|++.++..
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-~~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-KLRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-ccCEEEeccccccccc
Confidence 369999999999988899999999999999999999999999999999999999999999985 3479999999866544
Q ss_pred --CCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcccc
Q 005532 176 --RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (692)
Q Consensus 176 --~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~ 253 (692)
.|+.+++... ......++.++++.+|+. +..
T Consensus 82 l~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~l~~~gl~-~~~ 114 (251)
T PRK09544 82 LPLTVNRFLRLR----------------------------------------------PGTKKEDILPALKRVQAG-HLI 114 (251)
T ss_pred cChhHHHHHhcc----------------------------------------------ccccHHHHHHHHHHcCCh-HHH
Confidence 2555543210 000012345677778886 466
Q ss_pred ccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEE
Q 005532 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (692)
Q Consensus 254 ~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~i~~l 329 (692)
++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+|+++
T Consensus 115 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 888999999999999999999999999999999999999999999887743 3899999999999999999999999
Q ss_pred ecceEEEeccChHH
Q 005532 330 EMGVSRTYEGNYSQ 343 (692)
Q Consensus 330 ~~G~~~~~~G~y~~ 343 (692)
++ ++ ...|...+
T Consensus 195 ~~-~i-~~~g~~~~ 206 (251)
T PRK09544 195 NH-HI-CCSGTPEV 206 (251)
T ss_pred CC-ce-EeeCCHHH
Confidence 65 54 45566543
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=341.11 Aligned_cols=209 Identities=23% Similarity=0.332 Sum_probs=170.5
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~--------- 160 (692)
.+.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4579999999999988999999999999999999999999999999999999985 79999998632
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.+++ .|+++|+...+... . ..........
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 139 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH---------------K-----------------------LVPRKEFRGV 139 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhc---------------c-----------------------CCCHHHHHHH
Confidence 25999999988765 89999985321000 0 0001112233
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++.+.+|||||+|||+|||||+.+|+||||||||++||+.++++|.++|++ .+.|||+||
T Consensus 140 ~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 455667777742 234677899999999999999999999999999999999999999999888754 258999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+++++..+||+++++++|++. ..|...+
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~ 248 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLV-EEGPTEQ 248 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 9999999999999999999974 4565443
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=319.71 Aligned_cols=204 Identities=26% Similarity=0.397 Sum_probs=170.1
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCe-----eEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----GEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~-----G~i~~~~~~~~------- 489 (692)
.+.++++||++.||++.+|++||+.|+++.++||+||+|||||||||+|.++.+... |+|.++|.++.
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 346899999999999999999999999999999999999999999999999987765 99999998762
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhcccc-----H-HHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDWR-----I-DDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~-----~-~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+.++|.+ +.+ .+|++||+........ . +.++..|....|= .+.+++....||||||||+|||
T Consensus 85 ~lRr~vGMVFQkP--nPF-p~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIA 161 (253)
T COG1117 85 ELRRRVGMVFQKP--NPF-PMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIA 161 (253)
T ss_pred HHHHHheeeccCC--CCC-CchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHH
Confidence 34566654 333 4999999987643211 1 1244455554441 2456788889999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCc--eEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~--tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||+.+|+|||||||||+|||.+...++++|.+++. |||+|||.+.-+.+++|++.++..|.+++|.. -+...
T Consensus 162 RalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~-T~~iF 236 (253)
T COG1117 162 RALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP-TDKIF 236 (253)
T ss_pred HHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC-HHhhh
Confidence 999999999999999999999999999999998754 99999999999999999999999999999844 44443
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=341.68 Aligned_cols=209 Identities=19% Similarity=0.299 Sum_probs=170.3
Q ss_pred CCCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC-------
Q 005532 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (692)
Q Consensus 93 ~~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~------- 160 (692)
...++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 34567999999999998889999999999999999999999999999999999987 689999997632
Q ss_pred -----ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccH
Q 005532 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (692)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (692)
..++|++|++.+++ .|+.+|+...... .. .. ...
T Consensus 115 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~------------------------~~-~~~ 153 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFP-KSIYDNVAYGLKI---------------QG------------------------YD-GDI 153 (285)
T ss_pred hHhhhccEEEEecCCccCc-CCHHHHHHHHHHH---------------cC------------------------Cc-HHH
Confidence 25999999987765 4999998532100 00 00 012
Q ss_pred HHHHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccC--CCeEE
Q 005532 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMV 310 (692)
Q Consensus 236 ~~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~--~~tvI 310 (692)
..++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++. +.|||
T Consensus 154 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tii 233 (285)
T PRK14254 154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVV 233 (285)
T ss_pred HHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 234556677777642 3457889999999999999999999999999999999999999999998887542 57999
Q ss_pred EEecCHHHHHhhcCeEE-EEecceEEEeccChHH
Q 005532 311 IISHDRAFLDQLCTKIV-ETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 311 ~vsHd~~~l~~~~d~i~-~l~~G~~~~~~G~y~~ 343 (692)
+||||++++..+||+++ ++++|++. ..|...+
T Consensus 234 i~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~ 266 (285)
T PRK14254 234 IVTHNMQQAARISDKTAVFLTGGELV-EFDDTDK 266 (285)
T ss_pred EEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHH
Confidence 99999999999999975 57999984 4565443
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=337.14 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=169.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~---------- 160 (692)
++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 3 IKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred cEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 569999999999988899999999999999999999999999999999999875 79999998632
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..++|++|++.++. .|+.+|+...... ... ........+
T Consensus 83 ~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 123 (251)
T PRK14270 83 LRKRVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HGI-----------------------KDKKELDKI 123 (251)
T ss_pred HHhheEEEecCCCcCC-CcHHHHHHhHHHh---------------cCC-----------------------CcHHHHHHH
Confidence 24999999988765 8999998522100 000 000011234
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivs 203 (251)
T PRK14270 124 VEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVT 203 (251)
T ss_pred HHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEE
Confidence 455666776631 345778999999999999999999999999999999999999999999888754 268999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+++++..+||+|+++++|++. ..|...+
T Consensus 204 H~~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 232 (251)
T PRK14270 204 HNMQQASRVSDYTAFFLMGDLI-EFNKTEK 232 (251)
T ss_pred cCHHHHHHhcCEEEEEECCeEE-EeCCHHH
Confidence 9999999999999999999985 4455443
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-40 Score=329.43 Aligned_cols=190 Identities=23% Similarity=0.339 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~ 167 (692)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 3789999999998889999999999999999999999999999999999999999999998743 2599999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++..|+.||+...... .. .....++.++++.+|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~-~~~~~~~~~~l~~~g 118 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL-----------------------------------------HG-PGDDEALWEALAQVG 118 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh-----------------------------------------cC-ccHHHHHHHHHHHcC
Confidence 998887788999998521100 00 011245667888889
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcC
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d 324 (692)
+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+.+
T Consensus 119 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 119 LA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 86 456888999999999999999999999999999999999999999999888754 47899999999999999888
Q ss_pred eEEEE
Q 005532 325 KIVET 329 (692)
Q Consensus 325 ~i~~l 329 (692)
+++++
T Consensus 198 ~~~~~ 202 (204)
T PRK13538 198 RKLRL 202 (204)
T ss_pred eEEec
Confidence 88776
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=324.62 Aligned_cols=204 Identities=25% Similarity=0.465 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------ceEEEEcccC
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEF 170 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------~~i~~v~Q~~ 170 (692)
++++++|+++||+..+++|+||+|++|++.|++|+||+||||.+++|+|+++|++|+|.++|.. .+|||+|.+-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 5899999999999999999999999999999999999999999999999999999999999854 3799999999
Q ss_pred ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCc
Q 005532 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (692)
Q Consensus 171 ~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~ 250 (692)
.+++.+||.|.+... . . ...++..+...++..+|+.+++.
T Consensus 82 GLy~k~tv~dql~yl-a--------------~------------------------LkGm~~~e~~~~~~~wLer~~i~- 121 (300)
T COG4152 82 GLYPKMTVEDQLKYL-A--------------E------------------------LKGMPKAEIQKKLQAWLERLEIV- 121 (300)
T ss_pred ccCccCcHHHHHHHH-H--------------H------------------------hcCCcHHHHHHHHHHHHHhcccc-
Confidence 999999999887421 0 0 11234445667788889999997
Q ss_pred cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHH---HccCCCeEEEEecCHHHHHhhcCeEE
Q 005532 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327 (692)
Q Consensus 251 ~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~---L~~~~~tvI~vsHd~~~l~~~~d~i~ 327 (692)
....+++.+||-|.+|+|.+..+++++|+++|||||||||||...+.|.+. +++.|.|||++||.++.+..+||+++
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 566778999999999999999999999999999999999999999999875 46789999999999999999999999
Q ss_pred EEecceEEEeccCh
Q 005532 328 ETEMGVSRTYEGNY 341 (692)
Q Consensus 328 ~l~~G~~~~~~G~y 341 (692)
.|+.|+. +..|+.
T Consensus 202 mL~kG~~-V~~G~v 214 (300)
T COG4152 202 MLKKGQT-VLYGTV 214 (300)
T ss_pred eecCCce-EEeccH
Confidence 9999997 456764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=347.75 Aligned_cols=210 Identities=23% Similarity=0.309 Sum_probs=176.0
Q ss_pred CCCCceEEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----
Q 005532 419 RSGRSVVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---- 489 (692)
Q Consensus 419 ~~~~~~l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---- 489 (692)
.++.++|+++|+++.|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 445678999999999974 35999999999999999999999999999999999999999999999875431
Q ss_pred ----------------------eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccC
Q 005532 490 ----------------------PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKV 541 (692)
Q Consensus 490 ----------------------~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~ 541 (692)
.+|+.|+....+. ..|+.+|+...... .. ...+..+++.+++.....++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLF-KDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhccc-cchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 2456665432343 45999998754211 11 2346788999999645678999
Q ss_pred CCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 542 ~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|++
T Consensus 175 ~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i 254 (320)
T PRK13631 175 FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKI 254 (320)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999764 46999999999999999999999999999
Q ss_pred EEecCChhHHHH
Q 005532 619 QDYAGDYNYYLE 630 (692)
Q Consensus 619 ~~~~g~~~~~~~ 630 (692)
+. .|+.+++..
T Consensus 255 ~~-~g~~~~~~~ 265 (320)
T PRK13631 255 LK-TGTPYEIFT 265 (320)
T ss_pred EE-eCCHHHHhc
Confidence 85 577666643
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=340.84 Aligned_cols=206 Identities=27% Similarity=0.401 Sum_probs=170.3
Q ss_pred CcEEEEeEEEEeC---------CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------
Q 005532 96 SGVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------ 160 (692)
++|+++|++|.|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|..
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 3599999999997 3679999999999999999999999999999999999999999999998742
Q ss_pred -------ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC
Q 005532 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (692)
Q Consensus 161 -------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
..++|++|++. +.+..|+.+|+...... +. ..+
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~--------------~~------------------------~~~ 123 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH--------------LL------------------------SLD 123 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh--------------hc------------------------cCC
Confidence 25999999973 44567999887421100 00 000
Q ss_pred cccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCC
Q 005532 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDV 307 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~ 307 (692)
......++.++++.+|+.+...++++.+|||||+||++|||||+.+|+||||||||++||+.+++.+.++|++ .+.
T Consensus 124 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 124 KAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred HHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 1112345667888889864567889999999999999999999999999999999999999999888877642 488
Q ss_pred eEEEEecCHHHHHhhcCeEEEEecceEEEeccC
Q 005532 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (692)
Q Consensus 308 tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~ 340 (692)
|||+|||+++++..+||+|+++++|++. ..|.
T Consensus 204 tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~ 235 (268)
T PRK10419 204 ACLFITHDLRLVERFCQRVMVMDNGQIV-ETQP 235 (268)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEe-eeCC
Confidence 9999999999999999999999999874 4454
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=334.88 Aligned_cols=204 Identities=32% Similarity=0.483 Sum_probs=172.1
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------ceEEEEccc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------~~i~~v~Q~ 169 (692)
|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 468999999998899999999999999999999999999999999999999999999988633 359999999
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+.+|+...... . ........+.+.++++.+++.
T Consensus 81 ~~~~~~~t~~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEI---------------R------------------------KHPKAKIKARVEELLELVQLE 121 (237)
T ss_pred hhhccCCcHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887778999998532100 0 000011223456778888886
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCe
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~ 325 (692)
...++.+.+|||||+||++|||||+.+|+++||||||++||+.+++++.++|++ .++|||++||+++++..+||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 122 -GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 567888999999999999999999999999999999999999999999888753 378999999999999999999
Q ss_pred EEEEecceEEEeccChH
Q 005532 326 IVETEMGVSRTYEGNYS 342 (692)
Q Consensus 326 i~~l~~G~~~~~~G~y~ 342 (692)
|+++++|++. ..|..+
T Consensus 201 i~~l~~g~i~-~~~~~~ 216 (237)
T TIGR00968 201 IVVMSNGKIE-QIGSPD 216 (237)
T ss_pred EEEEECCEEE-EecCHH
Confidence 9999999984 455543
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=333.12 Aligned_cols=194 Identities=27% Similarity=0.399 Sum_probs=162.8
Q ss_pred cEEEEeEEEEeCC-------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEC--CC--C-----
Q 005532 97 GVKLENISKSYKG-------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA--KS--N----- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~-------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~--~~--~----- 160 (692)
+|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 3789999999963 469999999999999999999999999999999999999999999997 31 1
Q ss_pred ---------ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC
Q 005532 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (692)
Q Consensus 161 ---------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
..++|++|++.+++..|+.+|+...+.. . ...
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~ 121 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE---------------R------------------------GVP 121 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH---------------c------------------------CCC
Confidence 2599999999888888999998521100 0 000
Q ss_pred cccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCe
Q 005532 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~t 308 (692)
.....+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .++|
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1112345667788889864445788999999999999999999999999999999999999999999887753 5889
Q ss_pred EEEEecCHHHHHhhcCeEEEE
Q 005532 309 MVIISHDRAFLDQLCTKIVET 329 (692)
Q Consensus 309 vI~vsHd~~~l~~~~d~i~~l 329 (692)
||+|||+.+++..+||+|+.+
T Consensus 202 ii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 202 LIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred EEEEeCCHHHHHHhcceeEec
Confidence 999999999999999999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=352.63 Aligned_cols=203 Identities=27% Similarity=0.398 Sum_probs=177.4
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCe--eEEEECCccce--------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNVL--------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~--G~i~~~~~~~~--------~~~~ 493 (692)
.|+++||+++|++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++ |+|.++|.++. .+|+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4899999999998889999999999999999999999999999999999999999 99999987642 3566
Q ss_pred cccchhhcCCCccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
+|+ ..+++.+|+.+|+....... . ...+.++++.+++. +..++++.+|||||||||+|||||+.+|+||||
T Consensus 85 fQ~--~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLL 161 (362)
T TIGR03258 85 FQN--YALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLL 161 (362)
T ss_pred ECC--cccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 765 35778999999998654211 1 23578899999995 678999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc-----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY-----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~-----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||++||+.++..|.+.|++. +.|+|+||||++++..+||+|++|++|++.. .|..++...
T Consensus 162 DEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~-~g~~~~~~~ 228 (362)
T TIGR03258 162 DEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAA-HGEPQALYD 228 (362)
T ss_pred cCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999988643 4599999999999999999999999999985 466655544
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=337.09 Aligned_cols=207 Identities=19% Similarity=0.302 Sum_probs=167.6
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~---------- 160 (692)
+.|+++|+++.|+++++|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 2 NKFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred CeEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 358999999999988899999999999999999999999999999999999986 59999998732
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..++|++|++.++. .||.+|+...... ... ......++++
T Consensus 82 ~~~i~~~~q~~~~~~-~tv~~~l~~~~~~---------------~~~-----------------------~~~~~~~~~~ 122 (249)
T PRK14253 82 RIKVGMVFQKPNPFP-MSIYENVAYGLRA---------------QGI-----------------------KDKKVLDEVV 122 (249)
T ss_pred HhheeEEecCCCcCc-ccHHHHHHhHHHh---------------cCC-----------------------CchHHHHHHH
Confidence 24999999988765 8999998532110 000 0000112334
Q ss_pred HHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.++++.+|+.+ ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 123 ~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh 202 (249)
T PRK14253 123 ERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202 (249)
T ss_pred HHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEec
Confidence 44555555532 345678899999999999999999999999999999999999999999888753 3689999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
+++++..+||+++++++|++. ..|...
T Consensus 203 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~ 229 (249)
T PRK14253 203 SMQQARRISDRTAFFLMGELV-EHDDTQ 229 (249)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHH
Confidence 999999999999999999984 456543
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=336.68 Aligned_cols=207 Identities=19% Similarity=0.279 Sum_probs=166.0
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~I~~~~~~---------- 160 (692)
+.|+++|++|+|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999999888999999999999999999999999999999999999997 6999987632
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..++|++|++.+++ .|+.+|+...... ... ......+..
T Consensus 83 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 123 (251)
T PRK14249 83 LRKRVGMVFQQPNPFP-KSIFDNVAFGPRM---------------LGT-----------------------TAQSRLDEV 123 (251)
T ss_pred hhceEEEEecCCccCc-CcHHHHHhhHHHh---------------cCC-----------------------ChhhHHHHH
Confidence 25999999998765 5999998532100 000 000001122
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivs 203 (251)
T PRK14249 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203 (251)
T ss_pred HHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 333444444421 245778999999999999999999999999999999999999999999887754 478999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
|+++++..+||+|+++++|++. +.|...
T Consensus 204 h~~~~~~~~~d~i~~l~~G~i~-~~~~~~ 231 (251)
T PRK14249 204 HNMQQAARASDWTGFLLTGDLV-EYGRTG 231 (251)
T ss_pred CCHHHHHhhCCEEEEEeCCeEE-EeCCHH
Confidence 9999999999999999999984 445543
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=335.99 Aligned_cols=202 Identities=26% Similarity=0.361 Sum_probs=174.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc---------------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------- 488 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~--------------- 488 (692)
+|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 48899999999988999999999999999999999999999999999999999999999988654
Q ss_pred -eeeeecccchhhcCCCccHHHHHHHH-hc---cc---cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhcc
Q 005532 489 -LPNYFEQNQAEALDLDKTVLETVAEA-AE---DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 489 -~~~~~~q~~~~~l~~~~tv~e~~~~~-~~---~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~ 560 (692)
..+|++|. ..+++..|+.+|+... .. .. ....+.++++.+|+. ...++++.+|||||||||+|||||+.
T Consensus 82 ~~i~~~~q~--~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~ 158 (242)
T PRK11124 82 RNVGMVFQQ--YNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMM 158 (242)
T ss_pred hheEEEecC--ccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 13456654 3466678999998642 11 11 123577889999995 56789999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 561 ~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|+||||||||++||+.+++++.+.|+++ +.|||+||||.+++..+||++++|++|++. +.|+++++.
T Consensus 159 ~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 229 (242)
T PRK11124 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIV-EQGDASCFT 229 (242)
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhc
Confidence 99999999999999999999999999864 469999999999999999999999999997 457777653
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-40 Score=353.42 Aligned_cols=195 Identities=26% Similarity=0.424 Sum_probs=167.8
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i 163 (692)
|++ |++++|++..+ |+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 2 l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i 78 (352)
T PRK11144 2 LEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRI 78 (352)
T ss_pred eEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCE
Confidence 777 99999987543 8999999999999999999999999999999999999999987632 259
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..||++|+...+.. ....++.+++
T Consensus 79 ~~v~q~~~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~l 113 (352)
T PRK11144 79 GYVFQDARLFPHYKVRGNLRYGMAK---------------------------------------------SMVAQFDKIV 113 (352)
T ss_pred EEEcCCcccCCCCcHHHHHHhhhhh---------------------------------------------hhHHHHHHHH
Confidence 9999999988899999998532110 0123456778
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l 319 (692)
+.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|+||||++++
T Consensus 114 ~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~ 192 (352)
T PRK11144 114 ALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEI 192 (352)
T ss_pred HHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHH
Confidence 888986 567899999999999999999999999999999999999999999998887643 488999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChH
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
..+||+|++|++|++. ..|...
T Consensus 193 ~~~~d~i~~l~~G~i~-~~g~~~ 214 (352)
T PRK11144 193 LRLADRVVVLEQGKVK-AFGPLE 214 (352)
T ss_pred HHhCCEEEEEeCCEEE-EecCHH
Confidence 9999999999999984 445543
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=336.58 Aligned_cols=207 Identities=22% Similarity=0.289 Sum_probs=168.4
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~----------- 160 (692)
+|+++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|..
T Consensus 3 ~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred eEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 59999999999988899999999999999999999999999999999999874 89999998732
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..++|++|++.++. .|+++|+....... .. ......+..+
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---------------~~-----------------------~~~~~~~~~~ 123 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIH---------------GV-----------------------KSKHKLDRIV 123 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHc---------------CC-----------------------CcHHHHHHHH
Confidence 25999999988765 89999985321100 00 0000112334
Q ss_pred HHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.++++.+|+.. ...++++.+|||||+||++|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH 203 (250)
T PRK14262 124 EESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 45566666632 235778999999999999999999999999999999999999999999888753 3689999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+++++..+||+|+++++|++. ..|..++
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 231 (250)
T PRK14262 204 NIGQAIRIADYIAFMYRGELI-EYGPTRE 231 (250)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EecCHHH
Confidence 999999999999999999984 4565443
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=332.22 Aligned_cols=192 Identities=31% Similarity=0.497 Sum_probs=164.9
Q ss_pred eEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+|+++||++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 3789999999974 57999999999999999999999999999999999999999999999886531
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhc--cc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.+|++|+ ..+.+..|+.+|+..... .. ....+.++++.+|+. ...++++.+|||||||||+|||+|+
T Consensus 81 ~~~~i~~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~ 157 (221)
T TIGR02211 81 RNKKLGFIYQF--HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIARALV 157 (221)
T ss_pred HHhcEEEEecc--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHh
Confidence 3456654 345567899999875321 11 123567899999995 5678999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEE
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQ 619 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~ 619 (692)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||+|++|++|+++
T Consensus 158 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~-~d~v~~l~~G~i~ 220 (221)
T TIGR02211 158 NQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKK-LDRVLEMKDGQLF 220 (221)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh-cCEEEEEeCCEec
Confidence 999999999999999999999999999754 4699999999999976 8999999999874
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=332.38 Aligned_cols=200 Identities=28% Similarity=0.408 Sum_probs=169.3
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------eeee
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~~~ 493 (692)
|+++||+++|+++++|+++||+|.+|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 57899999999888999999999999999999999999999999999999999999999886531 3455
Q ss_pred cccchhhcCCCccHHHHHHHHhccc----cHHHHHHHHhhc-CCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEe
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~----~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLD 568 (692)
+|.. .+.+..|+.+|+....... ....+..+++.+ ++ ....++++.+|||||||||+|||||+.+|++||||
T Consensus 81 ~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 157 (222)
T cd03224 81 PEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-KERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLD 157 (222)
T ss_pred cccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh-hhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEEC
Confidence 6543 4566789999987643211 122456677777 45 35678899999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 569 EPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||++||+.++..+.+.|+++ +.|||+||||.+++.++||+|++|++|++.. .|+.+++
T Consensus 158 EPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 219 (222)
T cd03224 158 EPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVL-EGTAAEL 219 (222)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEE-eCCHHHH
Confidence 999999999999999999865 3599999999999999999999999999974 4655443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=332.21 Aligned_cols=194 Identities=28% Similarity=0.411 Sum_probs=166.7
Q ss_pred ceEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc----------
Q 005532 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (692)
Q Consensus 423 ~~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~---------- 488 (692)
++|+++||+++|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57999999999975 3599999999999999999999999999999999999999999999988643
Q ss_pred ----eeeeecccchhhcCCCccHHHHHHHHhc---c---ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE---D---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 489 ----~~~~~~q~~~~~l~~~~tv~e~~~~~~~---~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
..+|++|+ ..+.+..|+.+|+..... . ....++.++++.+++. ...++++.+|||||||||+|||||
T Consensus 85 ~~~~~i~~~~q~--~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al 161 (228)
T PRK10584 85 LRAKHVGFVFQS--FMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAF 161 (228)
T ss_pred HHhheEEEEEcc--cccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHH
Confidence 13455554 345667899999865321 1 1124578899999995 567889999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||.+++.. ||++++|++|++..
T Consensus 162 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~-~d~i~~l~~g~i~~ 226 (228)
T PRK10584 162 NGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAAR-CDRRLRLVNGQLQE 226 (228)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-CCEEEEEECCEEEe
Confidence 9999999999999999999999999999754 4699999999999865 99999999999864
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=339.98 Aligned_cols=205 Identities=25% Similarity=0.451 Sum_probs=173.6
Q ss_pred eEEEEeEEEEcC---------CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----
Q 005532 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~---------~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----- 489 (692)
+|+++||++.|+ ++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999996 367999999999999999999999999999999999999999999999886541
Q ss_pred --------eeeecccchhhcCCCccHHHHHHHHhc---cc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHH
Q 005532 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|.....+.+..|+.+|+..... .. ....+.++++.+|+.....++++.+|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 356666533245567899999854321 11 123577899999995456788999999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|+++. .|..+++.
T Consensus 162 aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 239 (265)
T TIGR02769 162 ARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVE-ECDVAQLL 239 (265)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEE-ECCHHHHc
Confidence 99999999999999999999999999999988764 5699999999999999999999999999974 57666554
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=340.43 Aligned_cols=204 Identities=29% Similarity=0.400 Sum_probs=175.1
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------ee
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~ 491 (692)
+++|+++|+++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 45799999999999889999999999999999999999999999999999999999999999986541 35
Q ss_pred eecccchhhcCCCccHHHHHHHHhc----------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccC
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~ 561 (692)
|++|.. .+.+..|+.+|+..... ......+..+++.+++. ...++++.+|||||||||+|||||+.+
T Consensus 89 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 89 YLPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred EeccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 666542 34567899999875321 01123577899999995 567899999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++.++||+|++|++|++. ..|..+++.
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMI-AQGTPAELM 236 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-EecCHHHhc
Confidence 9999999999999999999999988764 469999999999999999999999999997 456666553
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=341.12 Aligned_cols=202 Identities=28% Similarity=0.419 Sum_probs=173.4
Q ss_pred eEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eee
Q 005532 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
+|+++|+++.|+ +..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 699999999996 567999999999999999999999999999999999999999999999986542 356
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
++|+....+ +..|+.+|+...... .. ...+..+++.+++. ...++++.+|||||||||+|||||+.+|++||
T Consensus 84 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 84 VFQDPDDQV-FSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EecChhhhh-ccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 777532223 467999999754221 11 23577889999995 66899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||||++||+.++..+.+.|+++ +.|||+||||++++.++||+|++|++|++.. .|+.+.+
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 225 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLA-EGDKSLL 225 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHh
Confidence 99999999999999999999865 4699999999999999999999999999985 4665544
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=337.62 Aligned_cols=203 Identities=28% Similarity=0.404 Sum_probs=173.7
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
++|+++|+++.|+++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++. ..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 4799999999999889999999999999999999999999999999999999999999999986541 23
Q ss_pred eecccchhhcCCCccHHHHHHHHhc------------------cc---cHHHHHHHHhhcCCCcccccccCCCCCHHHHH
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE------------------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~------------------~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 550 (692)
|++|+ ..+.+..|+.+|+..... .. ....+..+++.+|+. ...++++.+|||||||
T Consensus 84 ~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~q 160 (255)
T PRK11300 84 RTFQH--VRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQR 160 (255)
T ss_pred EeccC--cccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHHH
Confidence 44554 356677899999875311 00 012467788999994 5689999999999999
Q ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChh
Q 005532 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (692)
Q Consensus 551 rv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~ 626 (692)
||+|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++. +.|..+
T Consensus 161 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~-~~~~~~ 239 (255)
T PRK11300 161 RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPL-ANGTPE 239 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEE-ecCCHH
Confidence 999999999999999999999999999999999998754 469999999999999999999999999998 456655
Q ss_pred HHH
Q 005532 627 YYL 629 (692)
Q Consensus 627 ~~~ 629 (692)
++.
T Consensus 240 ~~~ 242 (255)
T PRK11300 240 EIR 242 (255)
T ss_pred HHh
Confidence 553
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=333.09 Aligned_cols=193 Identities=30% Similarity=0.475 Sum_probs=166.2
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC-----CCCeeEEEECCccce----------
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~-----~p~~G~i~~~~~~~~---------- 489 (692)
|+++||++.|+++++|+++||+|++||++||+|+||||||||+++|+|++ +|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999999888999999999999999999999999999999999999 999999999886541
Q ss_pred --eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCCccccccc--CCCCCHHHHHHHHHHHHh
Q 005532 490 --PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKADMLDRK--VSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~~~~~~~--~~~LSgGqkqrv~LAral 558 (692)
.+|++|+. .+. ..|+.+|+...... .. ...+..+++.+|+. ...+++ +.+|||||||||+|||||
T Consensus 81 ~~i~~~~q~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~LSgG~~qrv~la~al 156 (227)
T cd03260 81 RRVGMVFQKP--NPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALW-DEVKDRLHALGLSGGQQQRLCLARAL 156 (227)
T ss_pred hhEEEEecCc--hhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCC-hHHhccCCcccCCHHHHHHHHHHHHH
Confidence 34566653 344 68999998753211 11 23567889999995 444555 599999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEe
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~ 621 (692)
+.+|++|||||||++||+.+++.+.+.|+++. .|||+||||++++..+||++++|++|++..+
T Consensus 157 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 221 (227)
T cd03260 157 ANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEF 221 (227)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999998764 5999999999999999999999999999754
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=335.43 Aligned_cols=201 Identities=27% Similarity=0.444 Sum_probs=172.4
Q ss_pred EEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
|+++||+++|++ +.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 78999999999999999999999999999999999999999999999886542 2456
Q ss_pred cccchhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCc-ccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~-~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
+|. ..+.+..|+.+|+..... ... ...+.++++.+++.. ...++++.+|||||||||+|||||+.+|++||
T Consensus 81 ~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 158 (242)
T cd03295 81 IQQ--IGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLL 158 (242)
T ss_pred ccC--ccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 654 346667899999875421 111 235778999999963 36788999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||||++||+.+++.+.+.|.++ +.|||+||||.+++..+||+|++|++|++.. .|+.+.+
T Consensus 159 lDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 223 (242)
T cd03295 159 MDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQ-VGTPDEI 223 (242)
T ss_pred ecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHH
Confidence 99999999999999999999865 4599999999999999999999999999974 4665554
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=353.29 Aligned_cols=206 Identities=27% Similarity=0.452 Sum_probs=178.5
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eee
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNY 492 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~ 492 (692)
..++|+++|+++.|++..+|+++||+|++||+++|+|||||||||||++|+|+.+|++|+|.++|.++. .+|
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 356799999999999888999999999999999999999999999999999999999999999987652 467
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
++|+ ..+++.+|+.+|+...... .. ..++.++++.+++. +..++++.+|||||||||+|||||+.+|+|||
T Consensus 96 vfQ~--~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLL 172 (377)
T PRK11607 96 MFQS--YALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLL 172 (377)
T ss_pred EeCC--CccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7775 3578899999999865321 11 23577899999995 67899999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHH----hcCceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAIS----EYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~----~~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||++||..+++.|.+.|+ +++.|+|+||||.+++..+||+|++|++|++... |..+++..
T Consensus 173 LDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~-g~~~~~~~ 239 (377)
T PRK11607 173 LDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQI-GEPEEIYE 239 (377)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEE-cCHHHHHh
Confidence 999999999999998886654 3467999999999999999999999999999865 65554433
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=347.22 Aligned_cols=207 Identities=23% Similarity=0.388 Sum_probs=177.6
Q ss_pred CceEEEEeEEEEcCC----------eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc---
Q 005532 422 RSVVTIKNLEFGYED----------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~----------~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~--- 488 (692)
+++|+++||++.|+. ..+|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 457999999999962 4689999999999999999999999999999999999999999999998664
Q ss_pred ----------eeeeecccchhhcCCCccHHHHHHHHhc----cc---cHHHHHHHHhhcCCCcccccccCCCCCHHHHHH
Q 005532 489 ----------LPNYFEQNQAEALDLDKTVLETVAEAAE----DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKAR 551 (692)
Q Consensus 489 ----------~~~~~~q~~~~~l~~~~tv~e~~~~~~~----~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqr 551 (692)
..+|++|++...+++.+++.+++..... .. ....+.++|+.+|+.....++++.+||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 1457777765567888899888764321 11 123578899999996556799999999999999
Q ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhH
Q 005532 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNY 627 (692)
Q Consensus 552 v~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~ 627 (692)
|+|||||+.+|+|||+||||++||+.++..+.++|.++ +.|||+||||+.++..+||+|++|++|+++++ |+-++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~-g~~~~ 241 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEK-GTKEQ 241 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHH
Confidence 99999999999999999999999999999999988754 56999999999999999999999999999864 55544
Q ss_pred HH
Q 005532 628 YL 629 (692)
Q Consensus 628 ~~ 629 (692)
..
T Consensus 242 ~~ 243 (327)
T PRK11308 242 IF 243 (327)
T ss_pred Hh
Confidence 43
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=326.77 Aligned_cols=206 Identities=28% Similarity=0.401 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCcccee---------eee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP---------NYF 493 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~---------~~~ 493 (692)
+++++++++++||+-.+++||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++.. +..
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 57899999999999999999999999999999999999999999999999999999999999987631 222
Q ss_pred cccchhhcCCCccHHHHHHHHhc------------cc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHH
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE------------DW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~------------~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LA 555 (692)
.-.|...+++++||.||+..+.. .| ..+++..+|+.+|+. +..+.+..+||+|||+||-||
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~-~~a~~~A~~LsyG~qR~LEIA 161 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG-ELADRPAGNLSYGQQRRLEIA 161 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc-hhhcchhhcCChhHhHHHHHH
Confidence 22233467899999999987532 11 124588899999995 678999999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||+.+|+|||||||.+||.+.....+.+.|++. +.||++|-||+.++..+||||++|+.|++. ..|++++..+
T Consensus 162 rALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~I-AeG~P~eV~~ 239 (250)
T COG0411 162 RALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVI-AEGTPEEVRN 239 (250)
T ss_pred HHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCc-ccCCHHHHhc
Confidence 9999999999999999999999999999998765 359999999999999999999999999987 4698887754
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=343.47 Aligned_cols=205 Identities=25% Similarity=0.358 Sum_probs=173.8
Q ss_pred eEEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
.|+++||++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3899999999963 36999999999999999999999999999999999999999999999986541
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
.+|++|+....++ ..|+.+|+...... . ....+.++++.+|+.....++++.+|||||||||+|||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL 160 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLF-EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSIL 160 (286)
T ss_pred HHHhheEEEecChHhccc-hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 3577776432343 35999999764221 1 1235678899999954567889999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+.+|+||||||||++||+.++.++.++|+++ +.|||+||||++++..+||||++|++|+++. .|..+++..
T Consensus 161 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~~ 235 (286)
T PRK13646 161 AMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVS-QTSPKELFK 235 (286)
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHh
Confidence 9999999999999999999999999999864 4599999999999999999999999999984 577666543
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=336.59 Aligned_cols=206 Identities=21% Similarity=0.322 Sum_probs=172.0
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCcc-----ce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----VL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~-----~~-------- 489 (692)
++|+++||++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ +.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999998754 21
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHh---c--cc--cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAA---E--DW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~---~--~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|+.|.....+.+..++.+++.... . .+ ....+.++++.+++.....++++..|||||||||+|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lar 161 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIAR 161 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHH
Confidence 34555543223445567777775321 1 11 12457789999999544678899999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||+.+|++|||||||+|||+.+++.+.+.|.++ +.|||+||||.+++..+||++++|++|++.. .|..+++.
T Consensus 162 al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~-~~~~~~~~ 237 (253)
T TIGR02323 162 NLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE-SGLTDQVL 237 (253)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-ECCHHHHh
Confidence 999999999999999999999999999988754 5699999999999999999999999999974 46655553
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=342.78 Aligned_cols=207 Identities=22% Similarity=0.324 Sum_probs=171.5
Q ss_pred CcEEEEeEEEEeCC------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------
Q 005532 96 SGVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------- 160 (692)
++|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 36999999999963 469999999999999999999999999999999999999999999998632
Q ss_pred --ceEEEEcccCcc-CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 --MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 --~~i~~v~Q~~~~-~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.. ++..|+.+|+...... ..........
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~---------------------------------------~~~~~~~~~~ 123 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPEN---------------------------------------LGIPPEEIRE 123 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhh---------------------------------------cCCCHHHHHH
Confidence 248999999742 2346888887422100 0011122345
Q ss_pred HHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEe
Q 005532 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (692)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vs 313 (692)
++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..|.++|++ .+.|||+||
T Consensus 124 ~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 124 RVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 567888899996 577899999999999999999999999999999999999999999999887753 489999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||++++.. ||+++++++|++. +.|...++
T Consensus 203 H~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~ 231 (280)
T PRK13633 203 HYMEEAVE-ADRIIVMDSGKVV-MEGTPKEI 231 (280)
T ss_pred cChHHHhc-CCEEEEEECCEEE-EecCHHHH
Confidence 99999986 9999999999974 56765544
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=340.85 Aligned_cols=206 Identities=24% Similarity=0.405 Sum_probs=171.2
Q ss_pred CcEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 96 ~~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
++|+++|++++|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 46999999999975 359999999999999999999999999999999999999999999998743 259
Q ss_pred EEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
+|++|++. .++..|+.+|+...... . .........++.++
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~-----------------~----------------------~~~~~~~~~~~~~~ 126 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLEN-----------------H----------------------AVPYDEMHRRVSEA 126 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHh-----------------c----------------------CCCHHHHHHHHHHH
Confidence 99999985 55677898887422100 0 00011123456677
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~ 318 (692)
++.+|+. +..++++.+||||||||++|||||+.+|+||||||||++||+.+++.+.++|++ .+.|||+|||++++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~ 205 (269)
T PRK13648 127 LKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE 205 (269)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH
Confidence 8888986 567888999999999999999999999999999999999999999999887753 47899999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+.. ||+|+++++|++. +.|..++
T Consensus 206 ~~~-~d~i~~l~~G~i~-~~g~~~~ 228 (269)
T PRK13648 206 AME-ADHVIVMNKGTVY-KEGTPTE 228 (269)
T ss_pred Hhc-CCEEEEEECCEEE-EecCHHH
Confidence 986 9999999999984 5566544
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=342.83 Aligned_cols=207 Identities=23% Similarity=0.366 Sum_probs=172.8
Q ss_pred CcEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCc---cEEEECCCC----------
Q 005532 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---GNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~---G~I~~~~~~---------- 160 (692)
.+|+++|++|.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++ |+|.++|..
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 35999999999975 469999999999999999999999999999999999999987 899998743
Q ss_pred ceEEEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 ~~i~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++. .++..||.||+...... .........+++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~ 124 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN---------------------------------------RAVPRPEMIKIV 124 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh---------------------------------------CCCCHHHHHHHH
Confidence 25999999985 45678999998521100 001112233556
Q ss_pred HHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecC
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd 315 (692)
.++++.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+|||+
T Consensus 125 ~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7788899996 567899999999999999999999999999999999999999999999887743 48899999999
Q ss_pred HHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
++++. .||+|+++++|++. ..|...++
T Consensus 204 ~~~~~-~~d~i~~l~~G~i~-~~g~~~~~ 230 (282)
T PRK13640 204 IDEAN-MADQVLVLDDGKLL-AQGSPVEI 230 (282)
T ss_pred HHHHH-hCCEEEEEECCEEE-EeCCHHHH
Confidence 99995 79999999999984 55665443
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=340.48 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=170.9
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------ee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------PN 491 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------~~ 491 (692)
||+++||+++|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 489999999999888999999999999999999999999999999999999999999999987641 34
Q ss_pred eecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
|++|+... .....++.+|+...... .. ...+..+++.+++. +..++++.+|||||||||+|||+|+.+|+||
T Consensus 81 ~v~q~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~ll 158 (271)
T PRK13638 81 TVFQDPEQ-QIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYL 158 (271)
T ss_pred EEeeChhh-ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEE
Confidence 56654321 12345788887653211 11 23466789999984 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||||++||+.++..+.++|.++ +.|||+||||++++..+||++++|++|++.. .|..+++.
T Consensus 159 lLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 224 (271)
T PRK13638 159 LLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILT-HGAPGEVF 224 (271)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999875 4599999999999999999999999999985 46665554
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=336.94 Aligned_cols=203 Identities=30% Similarity=0.433 Sum_probs=174.2
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
+|+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 589999999999888999999999999999999999999999999999999999999999886531 3466
Q ss_pred cccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc------cC
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV------KP 561 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~------~~ 561 (692)
+|+. .+.+..|+.+|+....... ....+..+++.+++. ...++.+.+|||||||||+|||||+ .+
T Consensus 82 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~ 158 (258)
T PRK13548 82 PQHS--SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGP 158 (258)
T ss_pred ccCC--cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 6643 3456789999987642211 123577889999995 5678999999999999999999999 59
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|+||||||||++||+.+++.+.++|+++ +.|||+||||++++..+||+|++|++|++. ..|..+++..
T Consensus 159 p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 230 (258)
T PRK13548 159 PRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLV-ADGTPAEVLT 230 (258)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEE-eeCCHHHHhC
Confidence 9999999999999999999999988764 359999999999999999999999999997 4577766643
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=332.08 Aligned_cols=194 Identities=28% Similarity=0.434 Sum_probs=167.0
Q ss_pred ceEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
++|+++||++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 47999999999974 57999999999999999999999999999999999999999999999986541
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhc--c--c--cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE--D--W--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~--~--~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
.+|++|+ ..+++..|+.+|+..... . . ....+.++++.+|+. +..++++.+|||||||||+|||||
T Consensus 84 ~~~~~i~~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al 160 (233)
T PRK11629 84 LRNQKLGFIYQF--HHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIARAL 160 (233)
T ss_pred HHhccEEEEecC--cccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHH
Confidence 3456664 345667899999875321 1 1 123577899999995 567889999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++.. +|++++|++|+++.
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~ 225 (233)
T PRK11629 161 VNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTA 225 (233)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHh-hCEEEEEECCEEEE
Confidence 9999999999999999999999999999864 4599999999999988 46999999999874
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=354.60 Aligned_cols=203 Identities=23% Similarity=0.323 Sum_probs=172.5
Q ss_pred EeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCC----C--------------ce
Q 005532 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----N--------------MK 162 (692)
Q Consensus 101 ~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~----~--------------~~ 162 (692)
.++.+.|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. . ..
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45678888889999999999999999999999999999999999999999999999873 1 25
Q ss_pred EEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
|+|++|++.+++..||.||+...+.. . .++......++.++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~---------------~------------------------g~~~~~~~~~a~e~ 148 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM---------------Q------------------------GMPEAERRKRVDEQ 148 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999999998889999998532100 0 01111223466788
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~ 318 (692)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|.+ .++|||+||||+++
T Consensus 149 le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 149 LELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8999996 578899999999999999999999999999999999999999999999887642 48999999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+.++||+|++|++|++. ..|..++.
T Consensus 228 ~~~l~DrI~vl~~G~iv-~~g~~~ei 252 (382)
T TIGR03415 228 ALKIGNRIAIMEGGRII-QHGTPEEI 252 (382)
T ss_pred HHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999984 45665443
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=346.38 Aligned_cols=195 Identities=23% Similarity=0.338 Sum_probs=168.9
Q ss_pred EEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeeecccchhhcC
Q 005532 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQNQAEALD 502 (692)
Q Consensus 432 ~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~~q~~~~~l~ 502 (692)
++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++|. ..+.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~--~~~~ 78 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQY--ASVD 78 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCC--CCCC
Confidence 3677788999999999999999999999999999999999999999999999986541 4566665 3466
Q ss_pred CCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCH
Q 005532 503 LDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (692)
Q Consensus 503 ~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~ 576 (692)
+..|+.+|+....... ....+.++++.+++. ...++++.+|||||||||+||+||+.+|++|||||||+|||+
T Consensus 79 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~ 157 (302)
T TIGR01188 79 EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP 157 (302)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH
Confidence 7889999987543211 123577899999995 567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 577 PSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 577 ~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
.+++.+.+.|+++ +.|||++|||++++.++||+|++|++|++.. .|+.+++..
T Consensus 158 ~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~l~~ 213 (302)
T TIGR01188 158 RTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIA-EGTPEELKR 213 (302)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEE-ECCHHHHHH
Confidence 9999999999876 3599999999999999999999999999984 577776644
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=330.19 Aligned_cols=197 Identities=26% Similarity=0.421 Sum_probs=166.6
Q ss_pred EEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------------
Q 005532 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (692)
Q Consensus 98 l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------- 160 (692)
|+++|+++.|++ .++|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999975 579999999999999999999999999999999999999999999998742
Q ss_pred ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHH
Q 005532 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
..|+|++|++.+++..|+.+|+..... .. .....+.....+.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~---------------~~-----------------------~~~~~~~~~~~~~ 123 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALE---------------LQ-----------------------PNLSYQEARERAR 123 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHH---------------hc-----------------------cCCCHHHHHHHHH
Confidence 259999999988777899999853210 00 0011122334567
Q ss_pred HHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 005532 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (692)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~ 316 (692)
++++.+|+. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .++|||+||||+
T Consensus 124 ~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 124 AMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 888999985 567888999999999999999999999999999999999999999988877643 489999999999
Q ss_pred HHHHhhcCeEEEEecceE
Q 005532 317 AFLDQLCTKIVETEMGVS 334 (692)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~ 334 (692)
+.. .+||+|+++++|++
T Consensus 203 ~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHH-hhCCEEEEEECCEE
Confidence 864 79999999999864
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=334.30 Aligned_cols=202 Identities=28% Similarity=0.388 Sum_probs=169.9
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCeeEEEECCccce-----------ee
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~--~p~~G~i~~~~~~~~-----------~~ 491 (692)
|+++||+++|+++.+|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. .+
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999999889999999999999999999999999999999999995 799999999986531 23
Q ss_pred eecccchhhcCCCccHHHHHHHHhcc---------cc----HHHHHHHHhhcCCCcccccccCC-CCCHHHHHHHHHHHH
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAED---------WR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCKF 557 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~---------~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~LAra 557 (692)
|++|+ ..+.+..|+.+++...... .. ...+..+++.+++.....++++. .|||||||||+|||+
T Consensus 81 ~v~q~--~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~a 158 (243)
T TIGR01978 81 LAFQY--PEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQM 158 (243)
T ss_pred eeecc--ccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHH
Confidence 44554 3456678999987643210 01 23467889999996445677887 599999999999999
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEECCEEEEecCChhHHH
Q 005532 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 558 l~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~-~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+ ||++++|++|++. +.|+.+.+.
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 233 (243)
T TIGR01978 159 ALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIV-KSGDVELAK 233 (243)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEE-EecCHHHhc
Confidence 99999999999999999999999999999876 35999999999999998 8999999999997 457766553
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=335.40 Aligned_cols=213 Identities=22% Similarity=0.291 Sum_probs=169.0
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEECCCC-----------ceE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKI 163 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~I~~~~~~-----------~~i 163 (692)
+|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..|
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 388999999999888999999999999999999999999999999999995 6999999998743 249
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..|+.+++...... + ... ......+.+.+...+.+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~----~~~------------------~~~~~~~~~~~~~~~~~~l 128 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNA----------V----RSY------------------RGQEPLDRFDFQDLMEEKI 128 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhh----------h----hcc------------------cccccchHHHHHHHHHHHH
Confidence 9999998766655654443211000 0 000 0000011122345666788
Q ss_pred hhcCCCccccccccc-cCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHH
Q 005532 244 PELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l 319 (692)
+.++++....++++. +|||||||||+|||||+.+|+||||||||++||+.+++++.++|+ +.++|||+||||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 888886455667675 899999999999999999999999999999999999999988654 4578999999999999
Q ss_pred Hhh-cCeEEEEecceEEEeccChH
Q 005532 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 320 ~~~-~d~i~~l~~G~~~~~~G~y~ 342 (692)
..+ ||+|+++++|++ .+.|+++
T Consensus 209 ~~~~~d~i~~l~~g~i-~~~g~~~ 231 (248)
T PRK09580 209 DYIKPDYVHVLYQGRI-VKSGDFT 231 (248)
T ss_pred HhhhCCEEEEEECCeE-EEeCCHH
Confidence 987 899999999998 4678764
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=338.36 Aligned_cols=196 Identities=20% Similarity=0.315 Sum_probs=160.8
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~--------- 160 (692)
..+|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+
T Consensus 11 ~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 11 NIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred CceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 346999999999998889999999999999999999999999999999999987 689999998742
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++. .||.||+...... .. .. ...++
T Consensus 91 ~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~------------------------~~-~~~~~ 129 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFP-KSIYENIAFGARI---------------NG------------------------YT-GDMDE 129 (269)
T ss_pred HHhhceEEEccCCccch-hhHHHHHhhhhhh---------------cC------------------------Cc-HHHHH
Confidence 25999999988766 5999998532100 00 00 00112
Q ss_pred HHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+++. ....++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+|
T Consensus 130 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiiv 209 (269)
T PRK14259 130 LVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIV 209 (269)
T ss_pred HHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 233445555542 1345778899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEec
Q 005532 313 SHDRAFLDQLCTKIVETEM 331 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~ 331 (692)
|||++++..+||++++|++
T Consensus 210 tH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 210 THNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred eCCHHHHHHhcCEEEEEec
Confidence 9999999999999999997
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-40 Score=334.91 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=159.2
Q ss_pred EEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEc-ccCccCC
Q 005532 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS-QEFEVSM 174 (692)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~-Q~~~~~~ 174 (692)
+.|+.+++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++ |.+.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 55677789999999999999999999999999999999999999999999998642 2589997 5566667
Q ss_pred CCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccc
Q 005532 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (692)
Q Consensus 175 ~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~ 254 (692)
..|+.+|+..... +. .........++..+++.+|+. +..+
T Consensus 109 ~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~~~~ 148 (236)
T cd03267 109 DLPVIDSFYLLAA---------------IY------------------------DLPPARFKKRLDELSELLDLE-ELLD 148 (236)
T ss_pred CCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhc
Confidence 8899998742100 00 001111233456677888886 4678
Q ss_pred cccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEe
Q 005532 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (692)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~i~~l~ 330 (692)
+++.+||||||||++|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+|||+++++..+||+|+++.
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 88999999999999999999999999999999999999999999988753 37899999999999999999999999
Q ss_pred cceEE
Q 005532 331 MGVSR 335 (692)
Q Consensus 331 ~G~~~ 335 (692)
+|++.
T Consensus 229 ~G~i~ 233 (236)
T cd03267 229 KGRLL 233 (236)
T ss_pred CCEEE
Confidence 99873
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=351.84 Aligned_cols=195 Identities=26% Similarity=0.395 Sum_probs=166.5
Q ss_pred eEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceEEEEc
Q 005532 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (692)
Q Consensus 102 ~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i~~v~ 167 (692)
|++++|++..+ ++||+|++|++++|+|||||||||||++|+|+++|++|+|.++|.. ..|+|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987664 8999999999999999999999999999999999999999987632 2499999
Q ss_pred ccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcC
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+++..||++|+...+.. ........++.++++.+|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKR-----------------------------------------ARPSERRISFERVIELLG 120 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhc-----------------------------------------cChhHHHHHHHHHHHHcC
Confidence 999888889999998532110 000112345667888899
Q ss_pred CCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhc
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~ 323 (692)
+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++++..+|
T Consensus 121 L~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 121 IG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 96 578899999999999999999999999999999999999999999998887643 4889999999999999999
Q ss_pred CeEEEEecceEEEeccCh
Q 005532 324 TKIVETEMGVSRTYEGNY 341 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y 341 (692)
|+|++|++|++. ..|..
T Consensus 200 d~i~~l~~G~i~-~~g~~ 216 (354)
T TIGR02142 200 DRVVVLEDGRVA-AAGPI 216 (354)
T ss_pred CEEEEEeCCEEE-EECCH
Confidence 999999999984 55654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=339.55 Aligned_cols=210 Identities=20% Similarity=0.287 Sum_probs=166.6
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~--------- 160 (692)
.++|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 22 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 22 KVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred ceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 346999999999998889999999999999999999999999999999999987 699999998732
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++. .|+.+|+...... ... . +....+.
T Consensus 102 ~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~---------------~~~-~----------------------~~~~~~~ 142 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFP-KSIYDNVTYGPKI---------------HGI-K----------------------DKKTLDE 142 (271)
T ss_pred HHhhhEEEEecCCcccc-ccHHHHHHHHHHh---------------cCC-C----------------------cHHHHHH
Confidence 25999999988765 5999998532110 000 0 0000112
Q ss_pred HHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
.+.++++.+++. ....++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|
T Consensus 143 ~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiv 222 (271)
T PRK14238 143 IVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIV 222 (271)
T ss_pred HHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEE
Confidence 223333333221 1245678899999999999999999999999999999999999999999887753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|||++++..+||+|+++++|++. +.|...++
T Consensus 223 sH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~ 253 (271)
T PRK14238 223 THNMQQAARISDKTAFFLNGYVN-EYDDTDKI 253 (271)
T ss_pred EcCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999984 45665443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=336.82 Aligned_cols=203 Identities=29% Similarity=0.447 Sum_probs=174.5
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
+|+++|++++|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 589999999999889999999999999999999999999999999999999999999999886531 3566
Q ss_pred cccchhhcCCCccHHHHHHHHhc----------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
+|+. .+.+..|+.+|+..... ......+..+++.+++. ...++++.+|||||+|||+|||||+.+|+
T Consensus 82 ~q~~--~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ 158 (255)
T PRK11231 82 PQHH--LTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTP 158 (255)
T ss_pred cccC--CCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 6653 34566799999875311 01123567889999994 56789999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+|||||||++||+.+++.+.+.|.++ +.|||+||||++++.++||++++|++|++. ..|.++++..
T Consensus 159 llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 227 (255)
T PRK11231 159 VVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVM-AQGTPEEVMT 227 (255)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEE-EEcCHHHhcC
Confidence 99999999999999999999999765 459999999999999999999999999997 4577766643
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-40 Score=327.08 Aligned_cols=186 Identities=25% Similarity=0.401 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEcc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (692)
|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 468999999998899999999999999999999999999999999999999999999998643 25999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..|+++|+...... ..++++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------------------------------------~~~~~~~~~l~~~~l 115 (201)
T cd03231 81 APGIKTTLSVLENLRFWHAD---------------------------------------------HSDEQVEEALARVGL 115 (201)
T ss_pred ccccCCCcCHHHHHHhhccc---------------------------------------------ccHHHHHHHHHHcCC
Confidence 98887789999997421000 012345567778888
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCe
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~ 325 (692)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+||||...+..+|++
T Consensus 116 ~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 116 N-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 6 456788999999999999999999999999999999999999999999988753 488999999999999999999
Q ss_pred EEEE
Q 005532 326 IVET 329 (692)
Q Consensus 326 i~~l 329 (692)
++.+
T Consensus 195 ~~~~ 198 (201)
T cd03231 195 ELDL 198 (201)
T ss_pred eEec
Confidence 9876
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=337.64 Aligned_cols=202 Identities=25% Similarity=0.413 Sum_probs=174.9
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---eeEEEECCccce----------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNVL---------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~---~G~i~~~~~~~~---------- 489 (692)
++|+++||++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 3 ~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 3 TIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred cEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4799999999999889999999999999999999999999999999999999986 499999986542
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhc--------------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKA 550 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~--------------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkq 550 (692)
.+|++|+ ..+.+..|+.+|+..... ......+.++++.+|+. ...++++.+|||||||
T Consensus 83 ~~~~~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~q 159 (262)
T PRK09984 83 KSRANTGYIFQQ--FNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMV-HFAHQRVSTLSGGQQQ 159 (262)
T ss_pred HHHhheEEEccc--cccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCH-HHHhCCccccCHHHHH
Confidence 2455654 345667899999875321 01123578899999995 5678999999999999
Q ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChh
Q 005532 551 RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (692)
Q Consensus 551 rv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~ 626 (692)
||+|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++. +.|+++
T Consensus 160 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~-~~g~~~ 238 (262)
T PRK09984 160 RVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVF-YDGSSQ 238 (262)
T ss_pred HHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHH
Confidence 999999999999999999999999999999999999865 359999999999999999999999999996 568887
Q ss_pred HH
Q 005532 627 YY 628 (692)
Q Consensus 627 ~~ 628 (692)
++
T Consensus 239 ~~ 240 (262)
T PRK09984 239 QF 240 (262)
T ss_pred Hh
Confidence 76
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=335.83 Aligned_cols=202 Identities=25% Similarity=0.357 Sum_probs=173.2
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------------
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------- 489 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------------- 489 (692)
|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 47899999999888999999999999999999999999999999999999999999999886541
Q ss_pred --------eeeecccchhhcCCCccHHHHHHHHhc----cc---cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHH
Q 005532 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE----DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~~~~~~~----~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+ ..+.+..|+.+|+..... .. ....+.++++.+|+. ...++.+.+|||||+||++|
T Consensus 81 ~~~~~~~~i~~v~q~--~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~l 157 (252)
T TIGR03005 81 HLRQMRNKIGMVFQS--FNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAI 157 (252)
T ss_pred HHHHHhhCeEEEecC--cccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHH
Confidence 2345554 346667899999875321 01 123577889999995 56788999999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|+++. .|+++++..
T Consensus 158 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 236 (252)
T TIGR03005 158 ARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE-QGKPDEIFR 236 (252)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHhc
Confidence 99999999999999999999999999999998764 4599999999999999999999999999974 577776644
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=340.38 Aligned_cols=210 Identities=21% Similarity=0.284 Sum_probs=168.6
Q ss_pred CCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC--------
Q 005532 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~-------- 160 (692)
..+.|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|..
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 3457999999999988889999999999999999999999999999999999864 499999997632
Q ss_pred ----ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHH
Q 005532 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (692)
Q Consensus 161 ----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (692)
..|+|++|++.++. .||.||+..... . ... .+.....
T Consensus 116 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~--~-------------~~~-----------------------~~~~~~~ 156 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFP-KSIFDNIAYGPR--L-------------HGI-----------------------NDKKQLE 156 (286)
T ss_pred HHhhhcEEEECCCCCCCc-cCHHHHHHhHHH--h-------------cCC-----------------------CcHHHHH
Confidence 25999999988765 599999853210 0 000 0000112
Q ss_pred HHHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEE
Q 005532 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (692)
Q Consensus 237 ~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~ 311 (692)
.++.++++.+|+. .+..++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+
T Consensus 157 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi 236 (286)
T PRK14275 157 EIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236 (286)
T ss_pred HHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 3344555566652 1345778999999999999999999999999999999999999999999888754 3579999
Q ss_pred EecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 312 vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||||++++..+||+|++|++|++. +.|...+
T Consensus 237 vsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~ 267 (286)
T PRK14275 237 VTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQ 267 (286)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 999999999999999999999984 5565433
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=326.87 Aligned_cols=191 Identities=32% Similarity=0.484 Sum_probs=165.6
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
|+++|++++|+++.+ ++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 i~~~~l~~~~~~~~~--~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQPM--HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEec--ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 478999999987643 999999999999999999999999999999999999999999986542 4566665
Q ss_pred chhhcCCCccHHHHHHHHhc---c---ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 497 QAEALDLDKTVLETVAEAAE---D---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~---~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
. .+.+..|+.+|+..... . .....+.++++.+++. ...++++.+||||||||++|||||+.+|++||||||
T Consensus 79 ~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP 155 (211)
T cd03298 79 N--NLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLA-GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEP 155 (211)
T ss_pred c--ccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3 45667899999875321 1 1233578899999995 567889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++..
T Consensus 156 ~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 156 FAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 9999999999999999764 4699999999999999999999999999864
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=339.70 Aligned_cols=207 Identities=24% Similarity=0.302 Sum_probs=170.8
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC--------ccEEEECCCCc--------
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--------SGNVIKAKSNM-------- 161 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~--------~G~I~~~~~~~-------- 161 (692)
|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|...
T Consensus 2 l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 81 (272)
T PRK13547 2 LTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRL 81 (272)
T ss_pred eEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHH
Confidence 88999999999889999999999999999999999999999999999999998 99999987421
Q ss_pred --eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 162 --~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
.++|++|++..++..|+.||+........ ... ..........+
T Consensus 82 ~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~-------------~~~----------------------~~~~~~~~~~~ 126 (272)
T PRK13547 82 ARLRAVLPQAAQPAFAFSAREIVLLGRYPHA-------------RRA----------------------GALTHRDGEIA 126 (272)
T ss_pred HhhcEEecccCCCCCCCcHHHHHhhcccccc-------------ccc----------------------ccCCHHHHHHH
Confidence 38999999876667899999853210000 000 00001112346
Q ss_pred HHHhhhcCCCccccccccccCChHHHHHHHHHHHHc---------cCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CC
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QD 306 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~---------~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~ 306 (692)
.++++.+|+. ...++++.+|||||+|||+|||||+ .+|++|||||||++||+.+++++.++|++ .+
T Consensus 127 ~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~ 205 (272)
T PRK13547 127 WQALALAGAT-ALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205 (272)
T ss_pred HHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcC
Confidence 6788888986 4568889999999999999999999 59999999999999999999999887753 38
Q ss_pred CeEEEEecCHHHHHhhcCeEEEEecceEEEeccCh
Q 005532 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (692)
Q Consensus 307 ~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y 341 (692)
.|||+||||++++..+||+++++++|++. +.|..
T Consensus 206 ~tviiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~ 239 (272)
T PRK13547 206 LGVLAIVHDPNLAARHADRIAMLADGAIV-AHGAP 239 (272)
T ss_pred CEEEEEECCHHHHHHhCCEEEEEECCeEE-EecCH
Confidence 99999999999999999999999999974 45654
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=334.37 Aligned_cols=202 Identities=22% Similarity=0.318 Sum_probs=162.4
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~I~~~~~~----------- 160 (692)
+|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 5 IITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred eEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 5999999999998889999999999999999999999999999999999875 5 58999998742
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..|+|++|++.+++ .|+.+|+...+.. ... ......+..+
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~~~-----------------------~~~~~~~~~~ 125 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRL---------------AGV-----------------------KDKAVLDEAV 125 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHH---------------cCC-----------------------CCHHHHHHHH
Confidence 25999999988766 7999998532110 000 0000011222
Q ss_pred HHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.+.++.+++. ....++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+|||
T Consensus 126 ~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH 205 (252)
T PRK14255 126 ETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTH 205 (252)
T ss_pred HHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEEC
Confidence 3334444432 1345678899999999999999999999999999999999999999999888753 2589999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEe
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTY 337 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~ 337 (692)
+++++..+||+|+++++|++..+
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14255 206 SMHQASRISDKTAFFLTGNLIEF 228 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999998544
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=333.03 Aligned_cols=202 Identities=27% Similarity=0.391 Sum_probs=172.5
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----eeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~-----~G~i~~~~~~~~--------- 489 (692)
+|+++||+++|++..+|+++||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 478999999999888999999999999999999999999999999999999998 999999887542
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhccc---c----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHH
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|++|+. .+.+ .|+.+|+....... . ...+..+++.+|+.. ...++++.+|||||||||+|||
T Consensus 81 ~~~i~~v~q~~--~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lar 157 (247)
T TIGR00972 81 RRRVGMVFQKP--NPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIAR 157 (247)
T ss_pred HhheEEEecCc--ccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHH
Confidence 34555542 3555 89999987532111 1 235678899999952 4578899999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 231 (247)
T TIGR00972 158 ALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVE-YGPTEQIF 231 (247)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999998753 599999999999999999999999999974 46666554
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=339.48 Aligned_cols=205 Identities=27% Similarity=0.402 Sum_probs=175.3
Q ss_pred ceEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------
Q 005532 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------ 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------ 489 (692)
++|+++|+++.|+ ++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ 83 (283)
T PRK13636 4 YILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRES 83 (283)
T ss_pred ceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhh
Confidence 4799999999996 577999999999999999999999999999999999999999999999987641
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
.+|++|+....+ ...|+.+|+...... .. ...+..+++.+|+. ...++++.+||||||||++|||||+.+|+
T Consensus 84 ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~ 161 (283)
T PRK13636 84 VGMVFQDPDNQL-FSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPK 161 (283)
T ss_pred EEEEecCcchhh-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 356666542222 457999999753221 11 23477889999995 56899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||||++||+.++..+.++|+++ +.|||+||||++++..+|||+++|++|++. +.|.++++..
T Consensus 162 lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 231 (283)
T PRK13636 162 VLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVI-LQGNPKEVFA 231 (283)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 99999999999999999999988754 469999999999999999999999999997 4588777654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=339.91 Aligned_cols=206 Identities=24% Similarity=0.331 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCC---eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 97 GVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 97 ~l~i~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
+|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 5999999999974 259999999999999999999999999999999999999999999998743 249
Q ss_pred EEEcccCc-cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 164 ~~v~Q~~~-~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
+|++|++. .++..||.+|+...... . ......+.+++..+
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 124 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMEN---------------Q------------------------GIPREEMIKRVDEA 124 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 99999984 45678999998532100 0 00111223456677
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---c-CCCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~-~~~tvI~vsHd~~~ 318 (692)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.|+ + .+.|||+||||+++
T Consensus 125 l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~ 203 (277)
T PRK13642 125 LLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE 203 (277)
T ss_pred HHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 8888885 56788899999999999999999999999999999999999999999988764 2 48999999999999
Q ss_pred HHhhcCeEEEEecceEEEeccChHHH
Q 005532 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+. .||+|+++++|++. ..|..+++
T Consensus 204 ~~-~~d~i~~l~~G~i~-~~g~~~~~ 227 (277)
T PRK13642 204 AA-SSDRILVMKAGEII-KEAAPSEL 227 (277)
T ss_pred HH-hCCEEEEEECCEEE-EeCCHHHH
Confidence 97 59999999999974 55765544
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=330.86 Aligned_cols=201 Identities=24% Similarity=0.362 Sum_probs=169.3
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------eeee
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNYF 493 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~~~ 493 (692)
|+++||++.|+++++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 57899999999889999999999999999999999999999999999999999999999886531 3455
Q ss_pred cccchhhcCCCccHHHHHHHHhccc---cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
+|.. .+++..|+.+|+....... .......+++.+++.....++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEP 158 (230)
T TIGR03410 81 PQGR--EIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEP 158 (230)
T ss_pred ccCC--cccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCC
Confidence 6543 4566789999987543221 1223456677776323557889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|++||+.++..+.+.|.++ +.|||+||||.+++..+||+|++|++|++.. .|+.++.
T Consensus 159 t~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~-~~~~~~~ 219 (230)
T TIGR03410 159 TEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVA-SGAGDEL 219 (230)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ECCHHHc
Confidence 9999999999999999864 4699999999999999999999999999974 4665544
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=333.19 Aligned_cols=203 Identities=23% Similarity=0.372 Sum_probs=174.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------eee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~~ 492 (692)
+|+++|+++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 689999999999889999999999999999999999999999999999999999999999886531 345
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc---c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED---W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~---~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
++|+ ..+.+..|+.+|+...... . ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++|
T Consensus 83 ~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 159 (241)
T PRK10895 83 LPQE--ASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFI 159 (241)
T ss_pred eccC--CcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 5554 3455678999998753211 1 123477889999995 5678899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|+++++..
T Consensus 160 llDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 226 (241)
T PRK10895 160 LLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIA-HGTPTEILQ 226 (241)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEe-eCCHHHHhc
Confidence 999999999999999998888754 5699999999999999999999999999974 577776643
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=336.12 Aligned_cols=204 Identities=28% Similarity=0.395 Sum_probs=175.1
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------ee
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~ 491 (692)
..+|+++||+++|+++.+|+++||+|.+|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 45699999999999888999999999999999999999999999999999999999999999986541 35
Q ss_pred eecccchhhcCCCccHHHHHHHHh-c---------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccC
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAA-E---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~-~---------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~ 561 (692)
|++|+. .+.+..|+.+|+.... . ......+..+++.+++. ...++++.+||||||||++|||||+.+
T Consensus 85 ~v~q~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~ 161 (265)
T PRK10253 85 LLAQNA--TTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQE 161 (265)
T ss_pred EeeccC--cCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCChHHHHHHHHHHHHhcC
Confidence 666653 4556789999987531 1 01123567889999995 567899999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|++|||||||++||+.+++.+.+.|.++ +.|||+||||++++.++||++++|++|++.. .|..+++.
T Consensus 162 p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 232 (265)
T PRK10253 162 TAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVA-QGAPKEIV 232 (265)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999999998764 4599999999999999999999999999974 56665553
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=306.66 Aligned_cols=203 Identities=29% Similarity=0.461 Sum_probs=174.5
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCcccee--------eeecc
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------NYFEQ 495 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~--------~~~~q 495 (692)
+|.+++|.+.|+..+. .++++|+.||++||+||+||||||||++|+|+..|.+|+|+++|.+... ..++
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlF- 77 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLF- 77 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhh-
Confidence 3678899999986543 5789999999999999999999999999999999999999999987631 1223
Q ss_pred cchhhcCCCccHHHHHHHHhc------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 496 NQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
+..+++...||.+|+..... ....+.+..++.++|+ ....++.+.+|||||||||+|||+|+++-+||||||
T Consensus 78 -QEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl-~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDE 155 (231)
T COG3840 78 -QENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL-AGFLKRLPGELSGGQRQRVALARCLVREQPILLLDE 155 (231)
T ss_pred -hccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhCh-hhHhhhCccccCchHHHHHHHHHHHhccCCeEEecC
Confidence 34678899999999976532 1223468889999999 467899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHHHh
Q 005532 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~~~ 632 (692)
|++.||+.-+..+..++.+. +.|++||||..+.+.+++++++++++|+|. +.|..++++..+
T Consensus 156 PFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~-~~g~~~~~~~~~ 221 (231)
T COG3840 156 PFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIA-AQGSTQELLSGK 221 (231)
T ss_pred chhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEE-eeccHHHHhccC
Confidence 99999999999988887654 459999999999999999999999999998 678888877643
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=334.88 Aligned_cols=210 Identities=18% Similarity=0.293 Sum_probs=171.0
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECC------C---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------S--------- 159 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~------~--------- 159 (692)
.++|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++| .
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 4579999999999999999999999999999999999999999999999999999997766554 2
Q ss_pred -CceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 160 -NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 160 -~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
...++|++|++.+++..|+.+|+...... .. ..+......+
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~ 129 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKS---------------HG-----------------------IKEKREIKKI 129 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHH
Confidence 13599999999887788999998532100 00 0000112234
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+.. ...++.+..||||||||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+||
T Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvs 209 (257)
T PRK14246 130 VEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVS 209 (257)
T ss_pred HHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEE
Confidence 556677777742 245778899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+++++..+||+++++++|++.. .|..++
T Consensus 210 h~~~~~~~~~d~v~~l~~g~i~~-~g~~~~ 238 (257)
T PRK14246 210 HNPQQVARVADYVAFLYNGELVE-WGSSNE 238 (257)
T ss_pred CCHHHHHHhCCEEEEEECCEEEE-ECCHHH
Confidence 99999999999999999999854 454433
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=339.38 Aligned_cols=203 Identities=27% Similarity=0.352 Sum_probs=170.7
Q ss_pred EEEEeEEEEcCC-----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 425 l~~~~l~~~y~~-----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
|+++||++.|++ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 889999999974 36999999999999999999999999999999999999999999999886542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.+|++|+....+. ..|+.+|+...... .. ...+.++++.+++.....++++.+|||||||||+|||||+
T Consensus 83 ~~~~i~~~~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~ 161 (280)
T PRK13649 83 IRKKVGLVFQFPESQLF-EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILA 161 (280)
T ss_pred HHhheEEEeeChhhhhc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 3566665321233 46999998754221 11 1236678899999644578999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|..+++.
T Consensus 162 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (280)
T PRK13649 162 MEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVL-SGKPKDIF 233 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999998865 4699999999999999999999999999985 46655543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=334.55 Aligned_cols=209 Identities=18% Similarity=0.257 Sum_probs=168.3
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~---------- 160 (692)
+.|+++|+++.|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 359999999999988899999999999999999999999999999999999985 48999998642
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.+++ .|+.+|+...+... . ..+.......
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~ 126 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRIS---------------A-----------------------KLPQADLDEI 126 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHHh---------------c-----------------------CCCHHHHHHH
Confidence 25999999988765 89999985321100 0 0000111233
Q ss_pred HHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+. ....++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .++|||+||
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~t 206 (259)
T PRK14260 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206 (259)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44556666653 1346778899999999999999999999999999999999999999999888753 368999999
Q ss_pred cCHHHHHhhcCeEEEEe-----cceEEEeccChHHH
Q 005532 314 HDRAFLDQLCTKIVETE-----MGVSRTYEGNYSQY 344 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~-----~G~~~~~~G~y~~~ 344 (692)
|+++++..+||++++++ +|++. ..|...++
T Consensus 207 H~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~~ 241 (259)
T PRK14260 207 HNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQI 241 (259)
T ss_pred CCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHHH
Confidence 99999999999999997 48874 55665443
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=345.69 Aligned_cols=206 Identities=20% Similarity=0.329 Sum_probs=174.7
Q ss_pred ceEEEEeEEEEcC----CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCeeEEEECCccc------
Q 005532 423 SVVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK----PRGGEVLLGEHNV------ 488 (692)
Q Consensus 423 ~~l~~~~l~~~y~----~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~----p~~G~i~~~~~~~------ 488 (692)
++|+++||++.|+ ...+|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 3699999999994 4579999999999999999999999999999999999996 5899999998654
Q ss_pred --------eeeeecccchhhcCCCccHHHHHHHHhc------cc------cHHHHHHHHhhcCCCc--ccccccCCCCCH
Q 005532 489 --------LPNYFEQNQAEALDLDKTVLETVAEAAE------DW------RIDDIKGLLGRCNFKA--DMLDRKVSLLSG 546 (692)
Q Consensus 489 --------~~~~~~q~~~~~l~~~~tv~e~~~~~~~------~~------~~~~~~~~L~~~~l~~--~~~~~~~~~LSg 546 (692)
..+|++|+....+.+..|+.+++..... .+ ....+.++|+.+|+.. ...++.+.+|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1457777755556778899888864211 01 1235788999999963 245789999999
Q ss_pred HHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEec
Q 005532 547 GEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (692)
Q Consensus 547 Gqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~ 622 (692)
||||||+|||||+.+|+||||||||++||+.++..+.++|+++ +.|||+||||+.++..+||+|++|++|++++ .
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive-~ 240 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVE-T 240 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-E
Confidence 9999999999999999999999999999999999999998864 5699999999999999999999999999985 4
Q ss_pred CChhHHH
Q 005532 623 GDYNYYL 629 (692)
Q Consensus 623 g~~~~~~ 629 (692)
|+.+++.
T Consensus 241 g~~~~i~ 247 (330)
T PRK15093 241 APSKELV 247 (330)
T ss_pred CCHHHHH
Confidence 6655554
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-39 Score=333.38 Aligned_cols=205 Identities=20% Similarity=0.289 Sum_probs=168.2
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEECCCC--------ceEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIA 164 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p----~~G~I~~~~~~--------~~i~ 164 (692)
.|+++|++++| ++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..|+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 48999999999 56899999999999999999999999999999999999999 99999998743 3599
Q ss_pred EEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 165 FLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 165 ~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
|++|++. +.+..|+.+++..... . ......+.++.++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~-----------------~------------------------~~~~~~~~~~~~~ 121 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCL-----------------A------------------------LGKPADDATLTAA 121 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHH-----------------H------------------------cCCChHHHHHHHH
Confidence 9999974 2234577776531100 0 0000112456677
Q ss_pred hhhcCCCcc--ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCH
Q 005532 243 MPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (692)
Q Consensus 243 l~~lgl~~~--~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~ 316 (692)
++.+|+.+. ..++++.+|||||+|||+|||||+.+|+||||||||++||+.+++.+.+.|++ .+.|||+|||++
T Consensus 122 l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 122 LEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 888888632 46788999999999999999999999999999999999999999988887643 478999999999
Q ss_pred HHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 317 AFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 317 ~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+++..+||+++++++|++ ...|...++
T Consensus 202 ~~~~~~~d~v~~l~~G~i-~~~~~~~~~ 228 (254)
T PRK10418 202 GVVARLADDVAVMSHGRI-VEQGDVETL 228 (254)
T ss_pred HHHHHhCCEEEEEECCEE-EEecCHHHH
Confidence 999999999999999998 456665443
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-40 Score=310.04 Aligned_cols=197 Identities=25% Similarity=0.360 Sum_probs=170.5
Q ss_pred CcEEEEeEEEEeCCee--ceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCC-----CceEEEEcc
Q 005532 96 SGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-----NMKIAFLSQ 168 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~-----~~~i~~v~Q 168 (692)
+.+.+.+++.+|++++ +|+|+|++|.+||.++++||+||||||||++++|+++|+.|+|.+++. ...-|.|+|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 4588899999999877 999999999999999999999999999999999999999999998864 346799999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++.+|+.+|+..++.- . .++...-...+.+++..+|+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l---------------~------------------------Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQL---------------R------------------------GIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred cCccchhhHHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998644310 0 11111223456678888899
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEecCHHHHHhhcC
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsHd~~~l~~~~d 324 (692)
. +..++.+.+|||||||||.|||||+.+|++||||||+.+||+-+++.+.++| +..|+.+++||||++++.-+++
T Consensus 123 ~-~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 123 E-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred c-cccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 7 4558889999999999999999999999999999999999999999887765 5679999999999999999999
Q ss_pred eEEEEecc
Q 005532 325 KIVETEMG 332 (692)
Q Consensus 325 ~i~~l~~G 332 (692)
+++++..|
T Consensus 202 rLvvlsp~ 209 (259)
T COG4525 202 RLVVLSPG 209 (259)
T ss_pred eeEEecCC
Confidence 99999865
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=316.61 Aligned_cols=207 Identities=27% Similarity=0.425 Sum_probs=169.9
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc-----------eEE
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~-----------~i~ 164 (692)
++++++|++..||...+|++|||++++||+++|+|+||+||||||++|+|+.+|.+|+|.++|.+. .|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 469999999999999999999999999999999999999999999999999999999999998643 599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
||||.-.+|+.+||.||+..+....-.. .. ....+ +.+-++..
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~------------~~--~~~~~-----------------------e~v~~lFP 124 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDK------------EA--QERDL-----------------------EEVYELFP 124 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccc------------cc--ccccH-----------------------HHHHHHCh
Confidence 9999999999999999996432110000 00 00000 11112222
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH---c-cCCCeEEEEecCHHHHH
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---G-KQDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L---~-~~~~tvI~vsHd~~~l~ 320 (692)
.| .+..+++..+|||||||.+||||||+.+|++|||||||.||-|.-.+.+.+.+ + +.+.||++|.++..++.
T Consensus 125 ~L---ker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 125 RL---KERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred hH---HHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 21 24557788999999999999999999999999999999999999999988765 3 34779999999999999
Q ss_pred hhcCeEEEEecceEEEeccChHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+++||.++|++|++ .+.|.-.+
T Consensus 202 ~iaDr~yvle~Gri-v~~G~~~e 223 (237)
T COG0410 202 EIADRGYVLENGRI-VLSGTAAE 223 (237)
T ss_pred HhhCEEEEEeCCEE-EEecCHHH
Confidence 99999999999998 67887543
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=334.19 Aligned_cols=213 Identities=20% Similarity=0.286 Sum_probs=171.7
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCC--CCCCccEEEECCCC-----------ce
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSN-----------MK 162 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~--~~p~~G~I~~~~~~-----------~~ 162 (692)
++|+++|+++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+ ++|++|+|.++|.. ..
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 369999999999988899999999999999999999999999999999998 58999999987632 14
Q ss_pred EEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 163 i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
++|++|++.+++..|+.+++...+.... ..... ..........++.++
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~-----------~~~~~---------------------~~~~~~~~~~~~~~~ 133 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKR-----------KFQGL---------------------PELDPLEFLEIINEK 133 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhh-----------ccccc---------------------ccccHHHHHHHHHHH
Confidence 8899999888777899888643211000 00000 000111233456678
Q ss_pred hhhcCCCccccccccc-cCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHH
Q 005532 243 MPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~-~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~ 318 (692)
++.+|+.+...++++. .|||||+|||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+||||+++
T Consensus 134 l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~ 213 (252)
T CHL00131 134 LKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL 213 (252)
T ss_pred HHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8889986445677776 5999999999999999999999999999999999999999887753 48999999999999
Q ss_pred HHhh-cCeEEEEecceEEEeccCh
Q 005532 319 LDQL-CTKIVETEMGVSRTYEGNY 341 (692)
Q Consensus 319 l~~~-~d~i~~l~~G~~~~~~G~y 341 (692)
+..+ ||+++++++|++ .+.|..
T Consensus 214 ~~~~~~d~i~~l~~G~i-~~~~~~ 236 (252)
T CHL00131 214 LDYIKPDYVHVMQNGKI-IKTGDA 236 (252)
T ss_pred HHhhhCCEEEEEeCCEE-EEecCh
Confidence 9887 899999999998 456654
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=329.02 Aligned_cols=201 Identities=28% Similarity=0.452 Sum_probs=172.5
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeecc
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q 495 (692)
+|+++||+++|++.. .++||+|.+|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 478999999998643 4999999999999999999999999999999999999999999987542 356665
Q ss_pred cchhhcCCCccHHHHHHHHhc-c-----ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 496 NQAEALDLDKTVLETVAEAAE-D-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~-~-----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
+ ..+.+..|+.+|+..... . +....+.++++.+|+. ...++++.+|||||||||+||||++.+|++|||||
T Consensus 79 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 155 (232)
T PRK10771 79 E--NNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDE 155 (232)
T ss_pred c--cccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4 346667899999865321 1 1234578899999995 57899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||++||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|++|++. +.|+++++..
T Consensus 156 P~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 156 PFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EeCCHHHHHh
Confidence 99999999999999988754 459999999999999999999999999997 5688877754
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=340.16 Aligned_cols=204 Identities=25% Similarity=0.375 Sum_probs=170.4
Q ss_pred eEEEEeEEEEcCCe-----ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~-----~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
.|+++|+++.|+++ .+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 6 ~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 6 DIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred eEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 48999999999764 4999999999999999999999999999999999999999999999886531
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF 557 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAra 557 (692)
.+|++|+....+ ...|+.+|+...... .. ...+..+++.+++.....++++.+|||||||||+||||
T Consensus 86 ~~~~~~i~~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lara 164 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQL-FQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGI 164 (289)
T ss_pred HHHhccEEEEEeCcchhh-hhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHH
Confidence 346666532222 245999998754221 11 13466788999995456789999999999999999999
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 558 l~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++.++||+|++|++|++... |+.+++.
T Consensus 165 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~~ 239 (289)
T PRK13645 165 IAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI-GSPFEIF 239 (289)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe-CCHHHHh
Confidence 99999999999999999999999999988764 46999999999999999999999999999854 6655543
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=325.67 Aligned_cols=193 Identities=23% Similarity=0.405 Sum_probs=167.4
Q ss_pred CCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------eee
Q 005532 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNY 492 (692)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------~~~ 492 (692)
.++++|+++|++++|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3456899999999999888999999999999999999999999999999999999999999999986542 346
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc--c-cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED--W-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~--~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
+.|. +.+.+..|+.+|+...... . ....+.+++..+++. ...++++.+|||||||||+|||+++.+|+||||||
T Consensus 87 ~~q~--~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 163 (214)
T PRK13543 87 LGHL--PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDE 163 (214)
T ss_pred eecC--cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 6554 3455667999998654221 1 223467889999995 55789999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEEC
Q 005532 570 PTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKG 615 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~ 615 (692)
||++||+.+++++.+.|.++ +.|||+||||.+++.++||++++|+.
T Consensus 164 Pt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 164 PYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999765 57999999999999999999999874
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=335.87 Aligned_cols=210 Identities=20% Similarity=0.286 Sum_probs=169.0
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~--------- 160 (692)
.+.|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 346999999999988889999999999999999999999999999999999987 489999987632
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..++|++|++.++.. |+.+|+...+.. ... ......+.
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~ 143 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRL---------------QGI-----------------------NNRRVLDE 143 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHh---------------cCC-----------------------CcHHHHHH
Confidence 259999999887664 999998532110 000 00001122
Q ss_pred HHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
++.++++.+|+.+ ...++.+.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|
T Consensus 144 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiiv 223 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIV 223 (272)
T ss_pred HHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 3445555666532 245678899999999999999999999999999999999999999999887753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+++++..+||+|+++++|++. ..|...++
T Consensus 224 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 254 (272)
T PRK14236 224 THNMQQAARVSDYTAFMYMGKLV-EYGDTDTL 254 (272)
T ss_pred eCCHHHHHhhCCEEEEEECCEEE-ecCCHHHH
Confidence 99999999999999999999974 55665443
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=302.59 Aligned_cols=198 Identities=27% Similarity=0.438 Sum_probs=170.0
Q ss_pred cEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------
Q 005532 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------ 160 (692)
.|+++++++..+. ..||++|+|.|++||.++||||+||||||||-+++|+..|++|+|.+.|..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5899999999865 359999999999999999999999999999999999999999999998742
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..||||+|.+.+.+++|..||+..... +.. -........
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPle---------------L~g------------------------e~~~~~~~~ 126 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLE---------------LRG------------------------ESSADSRAG 126 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhh---------------hcC------------------------CccccHHHH
Confidence 369999999999999999999863210 000 001223445
Q ss_pred HHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHH----ccCCCeEEEEec
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L----~~~~~tvI~vsH 314 (692)
..++|+.+|+. ..++.+|.+|||||||||+||||++..|+||+.||||-+||..+-+.+.++| ++.|.|.|+|||
T Consensus 127 A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 127 AKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred HHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 67889999997 5677889999999999999999999999999999999999999988887765 467999999999
Q ss_pred CHHHHHhhcCeEEEEecceEE
Q 005532 315 DRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~ 335 (692)
|+....+ |+|++-+..|++.
T Consensus 206 D~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 206 DPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CHHHHHh-hhheeeeecceec
Confidence 9998876 9999999999863
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=327.05 Aligned_cols=196 Identities=29% Similarity=0.377 Sum_probs=170.5
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------eeeecccch
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------PNYFEQNQA 498 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------~~~~~q~~~ 498 (692)
|+++|+++.|+++++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~-- 78 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIES-- 78 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCC--
Confidence 47899999999889999999999999999999999999999999999999999999999886542 3455554
Q ss_pred hhcCCCccHHHHHHHHhc--cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCH
Q 005532 499 EALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (692)
Q Consensus 499 ~~l~~~~tv~e~~~~~~~--~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~ 576 (692)
..+.+..|+.+|+..... ......+.++++.+|+. +..++++.+|||||+||++||||++.+|++|||||||++||+
T Consensus 79 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~ 157 (223)
T TIGR03740 79 PPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP 157 (223)
T ss_pred CCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH
Confidence 345567899999865322 22345678899999995 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCC
Q 005532 577 PSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624 (692)
Q Consensus 577 ~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~ 624 (692)
.+++.+.++|.++ +.|||+||||.+++..+||+|++|++|++.. .|+
T Consensus 158 ~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~-~~~ 207 (223)
T TIGR03740 158 IGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGY-QGK 207 (223)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEE-ecC
Confidence 9999999999865 3599999999999999999999999999975 354
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=332.17 Aligned_cols=207 Identities=19% Similarity=0.303 Sum_probs=167.6
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC------------
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------------ 160 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~------------ 160 (692)
-+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 578999999998889999999999999999999999999999999999986 479999998732
Q ss_pred ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHH
Q 005532 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 161 ~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
..++|++|++.+++ .|+.+|+..... ..... .........+.
T Consensus 86 ~~i~~v~q~~~~~~-~tv~~ni~~~~~---------------~~~~~----------------------~~~~~~~~~~~ 127 (251)
T PRK14244 86 AKVGMVFQKPNPFP-KSIYDNVAYGPK---------------LHGLA----------------------KNKKKLDEIVE 127 (251)
T ss_pred hhEEEEecCccccc-CCHHHHHHHHHH---------------hcCCC----------------------CCHHHHHHHHH
Confidence 25999999987765 499999852210 00000 00011223455
Q ss_pred HHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecC
Q 005532 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (692)
Q Consensus 241 ~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd 315 (692)
++++.+|+.+ ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++ .++|||+||||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 6777888753 135677899999999999999999999999999999999999999999887753 37899999999
Q ss_pred HHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 316 ~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
++++..+||+|+++++|++. +.|...+
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~ 234 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIV-EYNTTQE 234 (251)
T ss_pred HHHHHhhcCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999984 4565433
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=332.06 Aligned_cols=209 Identities=22% Similarity=0.286 Sum_probs=167.6
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC--C---CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~--p---~~G~I~~~~~~--------- 160 (692)
.++|+++|++++|+++++|+|+||+|++|++++|+||||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 346999999999998899999999999999999999999999999999999975 3 48999988632
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++. .||++|+...... .. ..+....+.
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRI---------------HG-----------------------EKNKKTLDT 124 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHh---------------cC-----------------------CCCHHHHHH
Confidence 24999999988765 5999998522100 00 000011223
Q ss_pred HHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
.+.++++.+++.+ ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .++|||++
T Consensus 125 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14261 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIV 204 (253)
T ss_pred HHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEE
Confidence 3445556665531 235778999999999999999999999999999999999999999999887753 36899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+++++..+||+++++++|++. ..|...+
T Consensus 205 sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~ 234 (253)
T PRK14261 205 THNMQQAARVSDYTGFMYLGKLI-EFDKTTQ 234 (253)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EcCCHHH
Confidence 99999999999999999999984 4565443
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-39 Score=332.86 Aligned_cols=204 Identities=26% Similarity=0.372 Sum_probs=171.4
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~------- 489 (692)
.++|+++||+++|+++.+|+++||+|++|+++||+|+||||||||+++|+|+.. |++|+|.++|.++.
T Consensus 4 ~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 4 PPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred CcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 356999999999998889999999999999999999999999999999999864 68999999886542
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhc---cc----cHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+. .+.+ .|+.+|+..... .+ ....+..+++.+++.. ...++++.+|||||||||+|
T Consensus 84 ~~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~l 160 (253)
T PRK14242 84 ELRRRVGMVFQKP--NPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCI 160 (253)
T ss_pred HHhhcEEEEecCC--CCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHH
Confidence 34666643 3444 599999875421 11 1235677888888842 24578899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+.+|+||||||||++||+.++.++.+.|+++. .|||+||||.+++.++||+|++|++|++.. .|..+++.
T Consensus 161 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 236 (253)
T PRK14242 161 ARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIE-VGPTEQIF 236 (253)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999998763 599999999999999999999999999974 46666554
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=328.21 Aligned_cols=200 Identities=29% Similarity=0.503 Sum_probs=154.6
Q ss_pred cEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEE
Q 005532 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (692)
Q Consensus 97 ~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~ 164 (692)
.|+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 3889999999976 569999999999999999999999999999999999999999999998742 2599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++ .|+.||+....... . . ..+...++ . . .+. +.++
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~~~~-~-~---~~~~~~l~--------------~----------~---~l~----~~~~ 124 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGAPLA-D-D---ERILRAAE--------------L----------A---GVT----DFVN 124 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCCCCC-C-H---HHHHHHHH--------------H----------c---CcH----HHHH
Confidence 9999997765 69999975321000 0 0 00000000 0 0 001 1111
Q ss_pred hc--CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccC--CCeEEEEecCHHHHH
Q 005532 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~--~~tvI~vsHd~~~l~ 320 (692)
.+ |+... ....+.+||||||||++|||||+.+|++|||||||+|||+.++.++.++|++. +.|||+||||++++
T Consensus 125 ~~~~~~~~~-~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~- 202 (220)
T cd03245 125 KHPNGLDLQ-IGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL- 202 (220)
T ss_pred hccccccce-ecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-
Confidence 11 22211 23446899999999999999999999999999999999999999999888642 47999999999987
Q ss_pred hhcCeEEEEecceEE
Q 005532 321 QLCTKIVETEMGVSR 335 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~ 335 (692)
.+||+|+++++|++.
T Consensus 203 ~~~d~v~~l~~g~i~ 217 (220)
T cd03245 203 DLVDRIIVMDSGRIV 217 (220)
T ss_pred HhCCEEEEEeCCeEe
Confidence 699999999999874
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=330.71 Aligned_cols=203 Identities=25% Similarity=0.346 Sum_probs=173.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~--------- 489 (692)
+|+++||++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 3 KIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred eEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 58999999999988899999999999999999999999999999999999974 7999999987542
Q ss_pred -eeeecccchhhcCCCccHHHHHHHHhc--cc--c----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHHH
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAE--DW--R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~~~~~~~--~~--~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAra 557 (692)
.+|++|+. .+.+..|+.+|+..... .+ . ...+.++++.+++.. ...++++.+|||||||||+||||
T Consensus 83 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 160 (250)
T PRK14247 83 RVQMVFQIP--NPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARA 160 (250)
T ss_pred cEEEEeccC--ccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHH
Confidence 34666653 35567899999875321 11 1 234678899999842 34688999999999999999999
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 558 l~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|+.+++.
T Consensus 161 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14247 161 LAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE-WGPTREVF 233 (250)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE-ECCHHHHH
Confidence 99999999999999999999999999999875 3599999999999999999999999999974 57766654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=336.18 Aligned_cols=205 Identities=26% Similarity=0.400 Sum_probs=174.1
Q ss_pred ceEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------ee
Q 005532 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~ 491 (692)
.+++++|++++|+ .+.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3689999999996 457999999999999999999999999999999999999999999999886542 35
Q ss_pred eecccchhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
|++|+....+ ...|+.+|+..... ... ...+.++++.+++. +..++++..||||||||++|||||+.+|+||
T Consensus 82 ~v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCccccc-ccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 6666532222 35799999875322 111 13467889999995 6689999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||++||+.++..+.+.|+++ +.|||+||||++++.++||||++|++|+++ +.|..+++..
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 227 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIV-AYGTVEEIFL 227 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEE-EECCHHHHhc
Confidence 999999999999999999998754 469999999999999999999999999998 4587777654
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=372.72 Aligned_cols=210 Identities=21% Similarity=0.351 Sum_probs=175.8
Q ss_pred CCcEEEEeEEEEeCC-----------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---
Q 005532 95 SSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--- 160 (692)
.++|+++|+++.|+. ..+|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 357999999999962 469999999999999999999999999999999999999999999998742
Q ss_pred ----------ceEEEEcccC--ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 005532 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (692)
Q Consensus 161 ----------~~i~~v~Q~~--~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (692)
..|+|++|++ .+++..||.+|+...+.. ..
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~---------------~~----------------------- 432 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV---------------HG----------------------- 432 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH---------------cC-----------------------
Confidence 2599999997 466788999998532100 00
Q ss_pred hcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----c
Q 005532 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (692)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~ 304 (692)
.........++.++|+.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +
T Consensus 433 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000112235677889999996456789999999999999999999999999999999999999999999988873 3
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 305 ~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.+.|||+||||++++..+||+|++|.+|++. ..|...+
T Consensus 513 ~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~~ 550 (623)
T PRK10261 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRRA 550 (623)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHH
Confidence 5899999999999999999999999999984 5566544
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=353.82 Aligned_cols=208 Identities=27% Similarity=0.425 Sum_probs=177.4
Q ss_pred CCCcEEEEeEEEEeCC-----------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--
Q 005532 94 ISSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-- 160 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-- 160 (692)
..+.++++|+++.|.. ..+++||||.|.+||++||||++|||||||.++|+|+++|++|+|.++|.+
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4678999999999973 248999999999999999999999999999999999999999999998753
Q ss_pred ----------ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 005532 161 ----------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (692)
Q Consensus 161 ----------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (692)
.++-+++|+|. +.+..||.+++...+.- . .
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~---------------~-----------------------~ 398 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRI---------------H-----------------------G 398 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhh---------------h-----------------------c
Confidence 35788889874 56778999987532210 0 0
Q ss_pred hcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----c
Q 005532 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (692)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~ 304 (692)
........+++.++|+.+|+++..+++++.+|||||||||+|||||+.+|++||+|||||+||+.....+.++|+ +
T Consensus 399 ~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e 478 (539)
T COG1123 399 GGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEE 478 (539)
T ss_pred ccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHH
Confidence 001123345788999999999878999999999999999999999999999999999999999999999888764 4
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccC
Q 005532 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (692)
Q Consensus 305 ~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~ 340 (692)
.|.|+||||||+.++.++||+|++|.+|++. -.|+
T Consensus 479 ~g~t~lfISHDl~vV~~i~drv~vm~~G~iV-E~G~ 513 (539)
T COG1123 479 LGLTYLFISHDLAVVRYIADRVAVMYDGRIV-EEGP 513 (539)
T ss_pred hCCEEEEEeCCHHHHHhhCceEEEEECCeEE-EeCC
Confidence 6999999999999999999999999999985 4454
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=333.94 Aligned_cols=206 Identities=26% Similarity=0.399 Sum_probs=171.3
Q ss_pred CCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-----
Q 005532 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (692)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~----- 489 (692)
++.++|+++|++++|+++.+|+++||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 17 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 96 (268)
T PRK14248 17 AKEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNIN 96 (268)
T ss_pred CCCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccccc
Confidence 34468999999999998889999999999999999999999999999999999864 78999999886542
Q ss_pred -------eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHH
Q 005532 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARL 552 (692)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv 552 (692)
.+|++|+. .+.+ .|+.+|+...... .. ...+..+++.+++.. ...++++.+|||||||||
T Consensus 97 ~~~~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl 173 (268)
T PRK14248 97 VVNLRREIGMVFQKP--NPFP-KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRL 173 (268)
T ss_pred HHHHhccEEEEecCC--ccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHH
Confidence 34666543 3434 5999998754211 11 123567788888742 346788999999999999
Q ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 553 ~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 174 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 251 (268)
T PRK14248 174 CIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVE-YDQTEQIF 251 (268)
T ss_pred HHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999999876 3599999999999999999999999999985 46665553
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=333.25 Aligned_cols=201 Identities=30% Similarity=0.457 Sum_probs=173.8
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeeec
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFE 494 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~~ 494 (692)
|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 68999999999889999999999999999999999999999999999999999999999886541 34666
Q ss_pred ccchhhcCCCccHHHHHHHHhc--------cc--cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 495 QNQAEALDLDKTVLETVAEAAE--------DW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~--------~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
|+. .+.+..|+.+|+..... .+ ....+.++++.+++. +..++++.+|||||||||+|||||+.+|+|
T Consensus 82 q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~l 158 (256)
T TIGR03873 82 QDS--DTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQEPKL 158 (256)
T ss_pred ccC--ccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 653 34567899999865310 01 123577889999994 677899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 225 (256)
T TIGR03873 159 LLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVA-AGPPREVL 225 (256)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEE-ecCHHHhh
Confidence 9999999999999999999999876 4699999999999999999999999999974 57766653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=330.10 Aligned_cols=202 Identities=19% Similarity=0.279 Sum_probs=169.9
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4799999999998888999999999999999999999999999999999999999999999986541 33
Q ss_pred eecccchhhcCCCccHHHHHHHHhc--cc--cHHHHHHHHhhc-CCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE--DW--RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~--~~--~~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
|+.|+ ..+.+..|+.+|+..... .. ....+..+++.+ ++. +..++++.+|||||||||+|||||+.+|+|||
T Consensus 84 ~~~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 84 IVPEG--RRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred EeccC--cccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 55554 345567899999876321 11 122355666766 353 45678899999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||||++||+.+++.+.+.|+++ +.|||++|||.+++.++||++++|++|++. +.|+.++.
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 224 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVV-LEDTGDAL 224 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEE-eeCCHHHH
Confidence 99999999999999999998764 469999999999999999999999999997 45766554
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-39 Score=349.74 Aligned_cols=199 Identities=24% Similarity=0.314 Sum_probs=167.0
Q ss_pred EeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc--------------eeeee
Q 005532 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------LPNYF 493 (692)
Q Consensus 428 ~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~--------------~~~~~ 493 (692)
.++.+.|+...+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ ..+|+
T Consensus 32 ~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv 111 (400)
T PRK10070 32 EQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMV 111 (400)
T ss_pred HHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEE
Confidence 3333334333489999999999999999999999999999999999999999999998654 13566
Q ss_pred cccchhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
+|+ ..+++..|+.+|+..... .+. ...+.++|+.+|+. ...++++.+|||||||||+|||||+.+|+||||
T Consensus 112 ~Q~--~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~-~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 112 FQS--FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLE-NYAHSYPDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred ECC--CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 665 356678999999976432 121 23577899999995 568999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||++||+.+++.+.+.|.++ +.|||+||||++++.++||+|++|++|++.. .|..+++..
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~-~g~~~~l~~ 254 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQ-VGTPDEILN 254 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEe-cCCHHHHHh
Confidence 9999999999999999998754 4599999999999999999999999999974 466666544
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=342.49 Aligned_cols=205 Identities=22% Similarity=0.313 Sum_probs=174.2
Q ss_pred eEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC----CCeeEEEECCccce------
Q 005532 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK----PRGGEVLLGEHNVL------ 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~----p~~G~i~~~~~~~~------ 489 (692)
+|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 6899999999976 469999999999999999999999999999999999997 48999999987641
Q ss_pred --------eeeecccchhhcCCCccHHHHHHHHhc----c---ccHHHHHHHHhhcCCCc--ccccccCCCCCHHHHHHH
Q 005532 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE----D---WRIDDIKGLLGRCNFKA--DMLDRKVSLLSGGEKARL 552 (692)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~~~~~~~----~---~~~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqkqrv 552 (692)
.+|++|+....+++.+++.+++..... . ...+.+.++|+.+|+.. ...++++.+|||||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv 162 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRV 162 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHH
Confidence 467777654457788888877654321 1 11245788999999963 346889999999999999
Q ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 553 ~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
+|||||+.+|+||||||||++||+.++..+.++|+++ +.|+|+||||+.++..+||||++|++|++++. |+.++.
T Consensus 163 ~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~-g~~~~~ 241 (326)
T PRK11022 163 MIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET-GKAHDI 241 (326)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE-CCHHHH
Confidence 9999999999999999999999999999999988764 45999999999999999999999999999864 655554
Q ss_pred H
Q 005532 629 L 629 (692)
Q Consensus 629 ~ 629 (692)
.
T Consensus 242 ~ 242 (326)
T PRK11022 242 F 242 (326)
T ss_pred h
Confidence 4
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-39 Score=332.41 Aligned_cols=208 Identities=21% Similarity=0.264 Sum_probs=169.1
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCC-----ccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~-----~G~I~~~~~~---------- 160 (692)
+.|+++|++++|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3599999999998888999999999999999999999999999999999999985 8999887632
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..++|++|++.+++ .|+.||+...... ... ........+
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 126 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKI---------------VGW-----------------------RPKLEIDDI 126 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cCC-----------------------CcHHHHHHH
Confidence 24999999988765 8999998532100 000 000011234
Q ss_pred HHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEE
Q 005532 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (692)
Q Consensus 239 i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~ 311 (692)
+.++++.+|+.. ...++++.+|||||+||++|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+
T Consensus 127 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 456666666631 245788899999999999999999999999999999999999999999887753 4899999
Q ss_pred EecCHHHHHhhcCeEEEEec-----ceEEEeccChHH
Q 005532 312 ISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQ 343 (692)
Q Consensus 312 vsHd~~~l~~~~d~i~~l~~-----G~~~~~~G~y~~ 343 (692)
||||++++..+||+|+++++ |++ .+.|...+
T Consensus 207 vsH~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~ 242 (261)
T PRK14258 207 VSHNLHQVSRLSDFTAFFKGNENRIGQL-VEFGLTKK 242 (261)
T ss_pred EECCHHHHHHhcCEEEEEccCCCcCceE-EEeCCHHH
Confidence 99999999999999999999 887 45566544
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-39 Score=335.47 Aligned_cols=204 Identities=27% Similarity=0.407 Sum_probs=173.9
Q ss_pred eEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce------------e
Q 005532 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------P 490 (692)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------------~ 490 (692)
+|+++||++.|+ .+.+|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999997 457999999999999999999999999999999999999999999999986642 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+|++|+....+ ...|+.+|+...... . ....+..+++.+++. +..++++.+|||||+||++|||||+.+|+|
T Consensus 81 ~~v~q~~~~~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~l 158 (275)
T PRK13639 81 GIVFQNPDDQL-FAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEI 158 (275)
T ss_pred EEEeeChhhhh-ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 46666532223 356999998753211 1 123577899999995 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|++|++.. .|+.+++..
T Consensus 159 lllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 226 (275)
T PRK13639 159 IVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIK-EGTPKEVFS 226 (275)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999999875 4599999999999999999999999999985 477776643
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=331.55 Aligned_cols=205 Identities=21% Similarity=0.329 Sum_probs=171.7
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce------
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------ 489 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~------ 489 (692)
..++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 9 ~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 9 AQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred cceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 34579999999999988899999999999999999999999999999999999975 8999999886541
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|.. .+.+ .|+.+|+...... .. ...+..+++.+++. ....++++.+|||||||||+|
T Consensus 89 ~~~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~l 165 (258)
T PRK14268 89 VELRKNVGMVFQKP--NPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCI 165 (258)
T ss_pred HHHhhhEEEEecCC--ccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHH
Confidence 24555543 3444 8999999754211 11 12467788888874 234678899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++.++||+|++|++|++.. .|..+++.
T Consensus 166 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 241 (258)
T PRK14268 166 ARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIE-FGQTRQIF 241 (258)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHh
Confidence 99999999999999999999999999999999875 3599999999999999999999999999974 46655543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=337.16 Aligned_cols=200 Identities=25% Similarity=0.316 Sum_probs=171.8
Q ss_pred EEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------------ee
Q 005532 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PN 491 (692)
Q Consensus 426 ~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------------~~ 491 (692)
.++|+++.|+++.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 5679999999999999999999999999999999999999999999999999999999886531 34
Q ss_pred eecccchhhcCCCccHHHHHHHHhcc--c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~--~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
|++|. ..+.+..|+.+|+...... + ....+.++++.+++. +..++++.+|||||||||+|||||+.+|+||
T Consensus 106 ~v~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 106 MVFQS--FALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred EEecC--cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 55554 3456678999998764211 1 123577889999995 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||||++||+.+++.+.+.|.++ +.|||+||||++++.++||++++|++|++.. .|..+++.
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 249 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQ-VGTPEEIL 249 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999998765 4699999999999999999999999999985 46666554
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=337.18 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=167.4
Q ss_pred cEEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------ceEEEEcc
Q 005532 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (692)
Q Consensus 97 ~l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------~~i~~v~Q 168 (692)
.|+++|++++|+ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 499999999996 5789999999999999999999999999999999999999999999998743 25999999
Q ss_pred cCccC--CCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 169 EFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 169 ~~~~~--~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
++.+. ...++.+++....... .... .........++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~-------------~~~~----------------------~~~~~~~~~~~~~~l~~~ 130 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGH-------------MGWL----------------------RRAKKRDRQIVTAALARV 130 (272)
T ss_pred ccccccCCCcchhhheecccccc-------------cccc----------------------cCCCHHHHHHHHHHHHHc
Confidence 97642 2346777763210000 0000 000011233456778888
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhc
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~~ 323 (692)
|+. ...++++.+||||||||++|||||+.+|+||||||||++||+.+++++.++|+ +.+.|||+||||++++..+|
T Consensus 131 gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 131 DMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred CCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 886 46788999999999999999999999999999999999999999999998875 34889999999999999999
Q ss_pred CeEEEEecceEEEeccChHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+++++ +|++. +.|...+
T Consensus 210 d~v~~~-~G~i~-~~g~~~~ 227 (272)
T PRK15056 210 DYTVMV-KGTVL-ASGPTET 227 (272)
T ss_pred CEEEEE-CCEEE-eecCHHh
Confidence 999877 78873 5566543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-39 Score=333.11 Aligned_cols=206 Identities=18% Similarity=0.274 Sum_probs=163.7
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~---------- 160 (692)
++|+++|++++|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|..
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 46999999999998889999999999999999999999999999999999976 489999998732
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.+++ .|+.+|+....... . . . ....++
T Consensus 89 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-----------~---------------------------~-~~~~~~ 127 (264)
T PRK14243 89 VRRRIGMVFQKPNPFP-KSIYDNIAYGARIN-G-----------Y---------------------------K-GDMDEL 127 (264)
T ss_pred HhhhEEEEccCCcccc-ccHHHHHHhhhhhc-C-----------c---------------------------c-hHHHHH
Confidence 24999999987765 59999985321100 0 0 0 001112
Q ss_pred HHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+. ....++++.+|||||+|||+|||||+.+|+||||||||++||+.+++++.++|++ .+.|||+||
T Consensus 128 ~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vt 207 (264)
T PRK14243 128 VERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVT 207 (264)
T ss_pred HHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 22333333432 1234677899999999999999999999999999999999999999999888753 358999999
Q ss_pred cCHHHHHhhcCeEEEEe---------cceEEEeccChHH
Q 005532 314 HDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQ 343 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~---------~G~~~~~~G~y~~ 343 (692)
|+++++..+||+|++|+ +|++. ..|...+
T Consensus 208 H~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~~~~ 245 (264)
T PRK14243 208 HNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDRTEK 245 (264)
T ss_pred cCHHHHHHhCCEEEEEecccccccccCceEE-EeCCHHH
Confidence 99999999999999998 68774 5565443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=340.89 Aligned_cols=210 Identities=21% Similarity=0.349 Sum_probs=177.4
Q ss_pred CCCceEEEEeEEEEcC----CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC---eeEEEECCccc----
Q 005532 420 SGRSVVTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHNV---- 488 (692)
Q Consensus 420 ~~~~~l~~~~l~~~y~----~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~---~G~i~~~~~~~---- 488 (692)
..+++|+++|+++.|+ ...+|+|+||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 3456899999999995 257999999999999999999999999999999999999996 99999998764
Q ss_pred ----------eeeeecccchhhcCCCccHHHHHHHHhc---ccc----HHHHHHHHhhcCCCc--ccccccCCCCCHHHH
Q 005532 489 ----------LPNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKA--DMLDRKVSLLSGGEK 549 (692)
Q Consensus 489 ----------~~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~~----~~~~~~~L~~~~l~~--~~~~~~~~~LSgGqk 549 (692)
..+|++|+....+++.+++.+++..... ... ...+.++|+.+++.. ...++++.+|||||+
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~ 167 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMR 167 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHH
Confidence 2457777765567788999888764321 111 235778899999963 235778999999999
Q ss_pred HHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCCh
Q 005532 550 ARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625 (692)
Q Consensus 550 qrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~ 625 (692)
|||+|||||+.+|+|||+||||++||+.++..+.++|+++ +.|+|+||||+.++..+||+|++|++|++++. |+.
T Consensus 168 QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~-g~~ 246 (330)
T PRK09473 168 QRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY-GNA 246 (330)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE-CCH
Confidence 9999999999999999999999999999999999988754 56999999999999999999999999999864 666
Q ss_pred hHHHH
Q 005532 626 NYYLE 630 (692)
Q Consensus 626 ~~~~~ 630 (692)
+++..
T Consensus 247 ~~i~~ 251 (330)
T PRK09473 247 RDVFY 251 (330)
T ss_pred HHHHh
Confidence 66544
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=330.76 Aligned_cols=204 Identities=25% Similarity=0.326 Sum_probs=172.1
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~-------- 489 (692)
.+|+++||++.|+++++|+++||+|.+||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 368999999999888899999999999999999999999999999999999987 4999999986542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhc--cc--c----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE--DW--R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~--~~--~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+ ..+.+..|+.+|+..... .. . ...+..+++.+++.. ...++++.+|||||||||+|
T Consensus 83 ~~~~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 83 VRREVGMVFQY--PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HhhceeEEecC--CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 2455554 345567899999875321 10 1 124677888888742 34678899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+.+|+||||||||++||+.+++++.+.|+++. .|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIE-VGPTRKVF 236 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999998763 699999999999999999999999999985 46665553
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=332.59 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=164.7
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~--------- 160 (692)
.++|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 18 ~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 18 HSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred CceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 4579999999999988899999999999999999999999999999999999863 68999988732
Q ss_pred ---ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 161 ---~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
..|+|++|++.++. .||.+|+....... ... ...+.
T Consensus 98 ~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~~------------~~~----------------------------~~~~~ 136 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFP-KSIYENIAFAPRAN------------GYK----------------------------GNLDE 136 (274)
T ss_pred HHhhcEEEEccCCcccc-ccHHHHHHhHHHhc------------Cch----------------------------HHHHH
Confidence 25999999987765 59999985321000 000 00011
Q ss_pred HHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 238 ~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
.+.++++.+|+. .+..++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|.+ .+.|||+|
T Consensus 137 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 216 (274)
T PRK14265 137 LVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMV 216 (274)
T ss_pred HHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 122333444431 1245678899999999999999999999999999999999999999999988754 36899999
Q ss_pred ecCHHHHHhhcCeEEEEe---------cceEEEeccChHH
Q 005532 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQ 343 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~---------~G~~~~~~G~y~~ 343 (692)
|||++++..+||++++|+ +|++. ..|...+
T Consensus 217 sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~-~~g~~~~ 255 (274)
T PRK14265 217 THNMQQASRVADWTAFFNTEIDEYGKRRGKLV-EFSPTEQ 255 (274)
T ss_pred eCCHHHHHHhCCEEEEEecccccccccCceEE-EeCCHHH
Confidence 999999999999999997 78874 5566544
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=340.99 Aligned_cols=210 Identities=21% Similarity=0.315 Sum_probs=165.7
Q ss_pred CCcEEEEeEEEEeC--CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC-------
Q 005532 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~------- 160 (692)
...|+++|++++|. ..++|+|+||+|++|+++||+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~ 157 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKIS 157 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34699999999995 3569999999999999999999999999999999999986 579999987753
Q ss_pred -----ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccH
Q 005532 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (692)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (692)
..++|+||+|+++ +.|+++|+.... ... .. .+. ...
T Consensus 158 ~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~--~~~-------------~~-~~~----------------------~~~ 198 (329)
T PRK14257 158 SLELRTRIGMVFQKPTPF-EMSIFDNVAYGP--RNN-------------GI-NDR----------------------KIL 198 (329)
T ss_pred hHhhhccEEEEecCCccC-CCcHHHHHHhHH--Hhc-------------CC-ChH----------------------HHH
Confidence 2599999999875 689999986321 000 00 000 000
Q ss_pred HHHHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEE
Q 005532 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (692)
Q Consensus 236 ~~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI 310 (692)
++.+..+++.+++.+ ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+..++.+.|++ .++|||
T Consensus 199 ~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii 278 (329)
T PRK14257 199 EKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSII 278 (329)
T ss_pred HHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEE
Confidence 112233344444321 234677899999999999999999999999999999999999999999887753 368999
Q ss_pred EEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 311 ~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+|||+++++.++||+|+++++|++. ..|...+.
T Consensus 279 ~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l 311 (329)
T PRK14257 279 IVTHSMAQAQRISDETVFFYQGWIE-EAGETKTI 311 (329)
T ss_pred EEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999999985 45765443
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=313.46 Aligned_cols=160 Identities=36% Similarity=0.580 Sum_probs=145.7
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEcc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (692)
++++|++++|++.++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 468999999988889999999999999999999999999999999999999999999998742 35999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..|+.+|+
T Consensus 81 ~~~~~~~~tv~~~~------------------------------------------------------------------ 94 (173)
T cd03230 81 EPSLYENLTVRENL------------------------------------------------------------------ 94 (173)
T ss_pred CCccccCCcHHHHh------------------------------------------------------------------
Confidence 98876667877663
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCe
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~ 325 (692)
. |||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|+|++|||.+++..+||+
T Consensus 95 --~--------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 95 --K--------LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred --h--------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 0 899999999999999999999999999999999999999887753 478999999999999999999
Q ss_pred EEEEecce
Q 005532 326 IVETEMGV 333 (692)
Q Consensus 326 i~~l~~G~ 333 (692)
++++++|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 99999885
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-39 Score=327.70 Aligned_cols=207 Identities=27% Similarity=0.405 Sum_probs=162.3
Q ss_pred EEEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEE
Q 005532 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v 166 (692)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 889999999975 579999999999999999999999999999999999999999999998732 259999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.++. .|+.+|+....... . ...+...++ . ..+...++.+
T Consensus 83 ~q~~~~~~-~tv~~~~~~~~~~~-~----~~~~~~~~~--------------~-----------------~~l~~~~~~~ 125 (229)
T cd03254 83 LQDTFLFS-GTIMENIRLGRPNA-T----DEEVIEAAK--------------E-----------------AGAHDFIMKL 125 (229)
T ss_pred cCCchhhh-hHHHHHHhccCCCC-C----HHHHHHHHH--------------H-----------------hChHHHHHhC
Confidence 99987755 49999985321100 0 000000000 0 0111223332
Q ss_pred --CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 005532 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~ 322 (692)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+|||+++++..
T Consensus 126 ~~~~~-~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~- 203 (229)
T cd03254 126 PNGYD-TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN- 203 (229)
T ss_pred ccccc-CHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-
Confidence 343 235667899999999999999999999999999999999999999999887753 47899999999999965
Q ss_pred cCeEEEEecceEEEeccChHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+|+++++|++. +.|.++++
T Consensus 204 ~d~i~~l~~g~~~-~~~~~~~~ 224 (229)
T cd03254 204 ADKILVLDDGKII-EEGTHDEL 224 (229)
T ss_pred CCEEEEEeCCeEE-EeCCHHHH
Confidence 9999999999984 56766544
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=330.64 Aligned_cols=207 Identities=25% Similarity=0.427 Sum_probs=162.5
Q ss_pred EEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 468999999964 569999999999999999999999999999999999999999999998743 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.++ ..||.+|+...... ... ..+...+ .. ..+.++++.
T Consensus 81 ~~q~~~~~-~~tv~~nl~~~~~~-~~~----~~~~~~~------------------------~~-------~~~~~~l~~ 123 (237)
T cd03252 81 VLQENVLF-NRSIRDNIALADPG-MSM----ERVIEAA------------------------KL-------AGAHDFISE 123 (237)
T ss_pred EcCCchhc-cchHHHHhhccCCC-CCH----HHHHHHH------------------------HH-------cCcHHHHHh
Confidence 99998774 57999998532100 000 0000000 00 011233333
Q ss_pred c--CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 005532 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~ 321 (692)
+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++|||++++.
T Consensus 124 l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Cccccc-chhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 3 443 345678899999999999999999999999999999999999999999887753 4789999999999996
Q ss_pred hcCeEEEEecceEEEeccChHHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
.||+|+++++|++. +.|...++
T Consensus 202 ~~d~v~~l~~G~i~-~~~~~~~~ 223 (237)
T cd03252 202 NADRIIVMEKGRIV-EQGSHDEL 223 (237)
T ss_pred hCCEEEEEECCEEE-EEcCHHHH
Confidence 59999999999984 55665443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-39 Score=328.55 Aligned_cols=207 Identities=27% Similarity=0.428 Sum_probs=163.7
Q ss_pred EEEEeEEEEeCCe--eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
|+++|++++|++. ++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4689999999875 79999999999999999999999999999999999999999999998742 24999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.++. .|++||+....... . .. .+...++ ...+.++++.
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~-~-~~---~~~~~~~-------------------------------~~~~~~~~~~ 123 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGA-T-RE---EVEEAAR-------------------------------AANAHEFIME 123 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCC-C-HH---HHHHHHH-------------------------------HcCcHHHHHh
Confidence 999988754 69999985321100 0 00 0000000 0012233444
Q ss_pred c--CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 005532 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~ 321 (692)
+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|||+++++..
T Consensus 124 l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4 444 345677899999999999999999999999999999999999999999888753 47899999999999976
Q ss_pred hcCeEEEEecceEEEeccChHHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
||+|+++++|++. ..|...++
T Consensus 203 -~d~v~~l~~G~i~-~~~~~~~~ 223 (234)
T cd03251 203 -ADRIVVLEDGKIV-ERGTHEEL 223 (234)
T ss_pred -CCEEEEecCCeEe-eeCCHHHH
Confidence 9999999999984 56665443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=334.99 Aligned_cols=202 Identities=28% Similarity=0.422 Sum_probs=171.9
Q ss_pred eEEEEeEEEEcCC---eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------e
Q 005532 424 VVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (692)
Q Consensus 424 ~l~~~~l~~~y~~---~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~ 490 (692)
+|+++||++.|++ +.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 6999999999973 45999999999999999999999999999999999999999999999987652 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+|+.|+.. ...+..|+.+|+...... .. ...+.++++.+|+. +..++++.+|||||||||+|||||+.+|+|
T Consensus 84 ~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 84 GMVFQNPD-NQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred eEEEcChH-HhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 56666532 234567999999754221 11 23578899999995 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||||||++||+.++..+.+.|+++ +.|||+||||++++. +||+|++|++|++.. .|+.+++.
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~-~~dri~~l~~G~i~~-~g~~~~~~ 228 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA-LSDRVLVMKNGQVES-TSTPRELF 228 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-ECCHHHHH
Confidence 9999999999999999999988754 459999999999995 799999999999984 46665553
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=327.56 Aligned_cols=209 Identities=25% Similarity=0.378 Sum_probs=178.7
Q ss_pred cEEEEeEEEEeCCe------------------------eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCcc
Q 005532 97 GVKLENISKSYKGV------------------------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (692)
Q Consensus 97 ~l~i~~ls~~y~~~------------------------~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G 152 (692)
.|+++|+++-||.+ .-++|+||+|+.||+..|.|-+|||||||+++|.++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 48899999999641 147899999999999999999999999999999999999999
Q ss_pred EEEECCCC--------------ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Q 005532 153 NVIKAKSN--------------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218 (692)
Q Consensus 153 ~I~~~~~~--------------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 218 (692)
+|.++|.+ .++++|+|++.++|+.||.+|+..++. +
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe--v---------------------------- 133 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE--V---------------------------- 133 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee--e----------------------------
Confidence 99999854 269999999999999999999864321 0
Q ss_pred HHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHH
Q 005532 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298 (692)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L 298 (692)
..++..+-++++.+.|+.+|+. .+.++++.+|||||||||.|||||+.+|+|||+|||||+|||--+..+
T Consensus 134 ---------~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 134 ---------QGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred ---------cCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 1123334456778889999997 678999999999999999999999999999999999999999888877
Q ss_pred HHHH----ccCCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHHH
Q 005532 299 EGYL----GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 299 ~~~L----~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~~ 346 (692)
++.| ++.++||||||||++++.++.|||..|++|++ .-.|...+.+.
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i-vQ~Gtp~eIl~ 254 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI-VQVGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE-EEeCCHHHHHc
Confidence 7644 45789999999999999999999999999998 45677655443
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=329.24 Aligned_cols=204 Identities=24% Similarity=0.356 Sum_probs=171.3
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~------- 489 (692)
.++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 3479999999999888899999999999999999999999999999999999987 4899999886541
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+. .+. ..|+.+|+...... +. ...+..+++.+++. .+..++++.+|||||||||+|
T Consensus 85 ~~~~~i~~v~q~~--~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~l 161 (254)
T PRK14273 85 ELRRKIGMVFQTP--NPF-LMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCI 161 (254)
T ss_pred HHhhceEEEeecc--ccc-cCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHH
Confidence 34566543 333 48999999754321 11 23467788888873 234688899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||+|+.+|+||||||||++||+.++..+.+.|+++. .|||+||||++++..+|||+++|++|++.. .|..+++.
T Consensus 162 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 237 (254)
T PRK14273 162 ARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEE-ESSTDELF 237 (254)
T ss_pred HHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 999999999999999999999999999999998763 599999999999999999999999999985 46655553
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=325.80 Aligned_cols=200 Identities=29% Similarity=0.442 Sum_probs=171.9
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
|+++|++++|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 46899999999889999999999999999999999999999999999999999999999886542 3566654
Q ss_pred chhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
..+....|+.+|+...... .....+..+++.+|+. ...++.+..|||||+|||+|||||+.+|++||||||
T Consensus 81 --~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (232)
T cd03300 81 --YALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEP 157 (232)
T ss_pred --cccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455578999998754321 1123567889999995 668889999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|++||+.++.++.+.|+++ +.|||++|||++++..+||++++|++|++... |..+++
T Consensus 158 ~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~-~~~~~~ 218 (232)
T cd03300 158 LGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQI-GTPEEI 218 (232)
T ss_pred cccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEec-CCHHHH
Confidence 9999999999999999765 46999999999999999999999999999854 554444
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=330.21 Aligned_cols=208 Identities=23% Similarity=0.335 Sum_probs=166.1
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC---------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~--------- 160 (692)
...|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 4569999999999988899999999999999999999999999999999999875 79999987532
Q ss_pred -----ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCc-cc
Q 005532 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL-DT 234 (692)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 234 (692)
..|+|++|++.++.. |+.+|+...+... . ... ..
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---------------~------------------------~~~~~~ 133 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---------------G------------------------VKRRSI 133 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---------------C------------------------CChHHH
Confidence 249999999887664 9999985321100 0 000 00
Q ss_pred HHHHHHHHhhhcCCC---ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeE
Q 005532 235 LDAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM 309 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~---~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tv 309 (692)
.++++.++++.+++. ....++.+.+|||||+|||+|||||+.+|+||||||||++||+.+++++.++|++ .+.||
T Consensus 134 ~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~ti 213 (265)
T PRK14252 134 LEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTI 213 (265)
T ss_pred HHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEE
Confidence 112233344444432 1244677899999999999999999999999999999999999999999887753 36899
Q ss_pred EEEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 310 I~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
|+|||+++++..+||+|+++++|++. ..|...+
T Consensus 214 iivth~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 246 (265)
T PRK14252 214 LIVTHNMQQAARVSDYTAYMYMGELI-EFGATDT 246 (265)
T ss_pred EEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHH
Confidence 99999999999999999999999985 4455433
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=329.89 Aligned_cols=204 Identities=27% Similarity=0.389 Sum_probs=171.6
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~------- 489 (692)
..+|+++|+++.|+++.+|+++||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 456999999999998889999999999999999999999999999999999986 58999999886541
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhc---ccc----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+. .+.+ .|+.+|+..... ... ...+.++++.+++.. ...++++.+|||||||||+|
T Consensus 91 ~~~~~i~~~~q~~--~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 91 LLRAKVGMVFQKP--TPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred HHhcceEEEecCC--ccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 34556543 3444 799999875422 111 134677889888742 34678899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++... |..+++.
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~~ 243 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEF-GNTDTIF 243 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHHHHH
Confidence 99999999999999999999999999999999876 35999999999999999999999999999854 6655554
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=328.50 Aligned_cols=208 Identities=19% Similarity=0.325 Sum_probs=168.0
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC-----------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN----------- 160 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~----------- 160 (692)
.|+++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 5899999999998889999999999999999999999999999999999864 489999988743
Q ss_pred -ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHH
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
..++|++|++.++. .|+.+|+...+... . ..+....+.++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIH---------------G-----------------------EDDEDFIEERV 123 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhc---------------C-----------------------CCCHHHHHHHH
Confidence 24999999988765 59999985322100 0 00000122334
Q ss_pred HHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEec
Q 005532 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (692)
Q Consensus 240 ~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsH 314 (692)
.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 45555555531 235778899999999999999999999999999999999999999999888753 4789999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
+++++..+||+++++++|++. +.|..+++
T Consensus 204 ~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14266 204 NMQQATRVSKYTSFFLNGEII-ESGLTDQI 232 (250)
T ss_pred CHHHHHhhcCEEEEEECCeEE-EeCCHHHH
Confidence 999999999999999999984 56765543
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=332.30 Aligned_cols=198 Identities=25% Similarity=0.470 Sum_probs=169.2
Q ss_pred ceEEEEeEEEEcC---------CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----
Q 005532 423 SVVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~---------~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---- 489 (692)
++|+++||++.|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 3689999999997 478999999999999999999999999999999999999999999999986541
Q ss_pred ---------eeeecccchhhcCCCccHHHHHHHHhc---c----ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHH
Q 005532 490 ---------PNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (692)
Q Consensus 490 ---------~~~~~q~~~~~l~~~~tv~e~~~~~~~---~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~ 553 (692)
.+|++|+....+.+..++.+++..... . .....+.++++.+|+.....++++.+||||||||++
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHH
Confidence 346666543345567889888753211 1 112357889999999645678999999999999999
Q ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 554 LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|||||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++..
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~ 232 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999988754 4699999999999999999999999999874
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=329.14 Aligned_cols=200 Identities=28% Similarity=0.439 Sum_probs=168.9
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhcC
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~ 502 (692)
++|+++||++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ...+|++|+.. +.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~~--~~ 79 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKLY--LD 79 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEeccccc--cc
Confidence 4799999999999888999999999999999999999999999999999999999999999863 34677777632 22
Q ss_pred C--CccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHH
Q 005532 503 L--DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580 (692)
Q Consensus 503 ~--~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~ 580 (692)
+ ..++.+++.... ......+..+++.+++. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++.
T Consensus 80 ~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 157 (251)
T PRK09544 80 TTLPLTVNRFLRLRP-GTKKEDILPALKRVQAG-HLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQV 157 (251)
T ss_pred cccChhHHHHHhccc-cccHHHHHHHHHHcCCh-HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 2 246777654321 12334577889999995 5678899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 581 MLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 581 ~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
.+.+.|.++ +.|||+||||++++..+||+|++|++ ++. ..|+.+++.
T Consensus 158 ~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~-~~g~~~~~~ 208 (251)
T PRK09544 158 ALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HIC-CSGTPEVVS 208 (251)
T ss_pred HHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceE-eeCCHHHHh
Confidence 999998754 56999999999999999999999965 665 456666554
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=322.02 Aligned_cols=189 Identities=31% Similarity=0.419 Sum_probs=163.0
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------------e
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------P 490 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------------~ 490 (692)
+++ ||+++|+++.+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 445 89999998766 99999999 999999999999999999999999999999999886531 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhcc----ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~----~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
+|++|+ ..+++..|+.+|+...... .....+.++++.+++. ...++++.+|||||||||+|||||+.+|+|||
T Consensus 78 ~~~~q~--~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 154 (214)
T cd03297 78 GLVFQQ--YALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLL 154 (214)
T ss_pred EEEecC--CccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 455554 3456678999998754321 1223577899999995 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||++++|++|++..
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 155 LDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999998764 4699999999999999999999999999864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-39 Score=326.58 Aligned_cols=196 Identities=29% Similarity=0.387 Sum_probs=161.7
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCCCC
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~T 177 (692)
+.+++++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. +.+..+...+.+..|
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~--~~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRV--SSLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEE--chhhcccccCCCCCc
Confidence 789999999999999999999999999999999999999999999999999999999998643 222223344556789
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCcccccccc
Q 005532 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (692)
Q Consensus 178 v~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~ 257 (692)
|.+|+...... . .........++.++++.+|+. +..++++
T Consensus 101 v~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 140 (224)
T cd03220 101 GRENIYLNGRL---------------L------------------------GLSRKEIDEKIDEIIEFSELG-DFIDLPV 140 (224)
T ss_pred HHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-hhhhCCh
Confidence 99997421100 0 000011223456677788886 5678889
Q ss_pred ccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeEEEEecceE
Q 005532 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (692)
Q Consensus 258 ~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~ 334 (692)
.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||+++++..+||+++++++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999988877643 478999999999999999999999999987
Q ss_pred E
Q 005532 335 R 335 (692)
Q Consensus 335 ~ 335 (692)
.
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 4
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=361.30 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=179.5
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------e
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~ 490 (692)
.++|+++|+++.|+++.+|+++||+|++|+++||+|||||||||||++|+|+++|++|+|.++|.++. .
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 88 (510)
T PRK15439 9 PPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGI 88 (510)
T ss_pred CceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCE
Confidence 34799999999999888999999999999999999999999999999999999999999999886541 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhccc--cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEe
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLD 568 (692)
+|++|+. .+.+..|+.+|+....... ..+.+.++++.+++. ...++++.+|||||||||+|||||+.+|+|||||
T Consensus 89 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLD 165 (510)
T PRK15439 89 YLVPQEP--LLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILD 165 (510)
T ss_pred EEEeccC--ccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 4666653 4667889999987643221 124577899999995 5678999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 569 EPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||++||+.+++++.+.|+++ +.|||+||||++++..+||+|++|++|++. +.|++++|..
T Consensus 166 EPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~ 229 (510)
T PRK15439 166 EPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIA-LSGKTADLST 229 (510)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecChHHcCH
Confidence 999999999999999998865 469999999999999999999999999997 4788888754
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-39 Score=320.62 Aligned_cols=187 Identities=27% Similarity=0.427 Sum_probs=162.9
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeeec
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFE 494 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~~ 494 (692)
+|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 488999999999888999999999999999999999999999999999999999999999986542 23444
Q ss_pred ccchhhcCCCccHHHHHHHHhcc---ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 495 QNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~---~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
+. ..+.+..|+.+|+...... .....+.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||
T Consensus 81 ~~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 157 (204)
T PRK13538 81 HQ--PGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPF 157 (204)
T ss_pred Cc--cccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 43 3456678999998764322 2334678899999995 5678999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE
Q 005532 572 NHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l 613 (692)
++||+.+++.+.++|+++ +.|||+||||.+++..+.+|++.+
T Consensus 158 ~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 158 TAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999876 469999999999999977888776
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=344.16 Aligned_cols=200 Identities=26% Similarity=0.407 Sum_probs=172.0
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------------- 489 (692)
||++ ||+++|+++.+ ++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~-~l~k~~~~~~~--~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLCL--TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEEE--EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 4778 99999987643 899999999999999999999999999999999999999999886531
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
.+|++|+ ..+++..|+.+|+..........++.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||
T Consensus 78 i~~v~q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDE 154 (352)
T PRK11144 78 IGYVFQD--ARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDE 154 (352)
T ss_pred EEEEcCC--cccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 3456654 35677899999997654333345688899999995 56899999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||++||+.+++.+.+.|+++ +.|+|+||||++++..+||+|++|++|++..+ |+.++...
T Consensus 155 Pts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~-g~~~~i~~ 218 (352)
T PRK11144 155 PLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAF-GPLEEVWA 218 (352)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEe-cCHHHHHh
Confidence 99999999999999988754 46999999999999999999999999999854 65555443
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=329.05 Aligned_cols=203 Identities=26% Similarity=0.354 Sum_probs=171.0
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~--------- 489 (692)
+|+++|++++|+++.+|+++||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999988899999999999999999999999999999999999974 7999999886541
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhc---ccc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHHHH
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|+.|+ ..+.+..|+.+|+..... ... ...+..+++.+++. ....++++.+|||||||||+|||
T Consensus 84 ~~~i~~~~q~--~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (258)
T PRK14241 84 RRTIGMVFQR--PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIAR 161 (258)
T ss_pred hcceEEEccc--cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 3455554 345567899999875421 111 12466788888873 23567889999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEE------CCEEEEecCChhHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK------GSNLQDYAGDYNYY 628 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~------~g~l~~~~g~~~~~ 628 (692)
||+.+|++|||||||++||+.++.++.+.|.++ +.|||+||||++++.++||+|++|+ +|++.. .|+.+++
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~-~~~~~~~ 240 (258)
T PRK14241 162 AIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE-IDDTEKI 240 (258)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe-cCCHHHH
Confidence 999999999999999999999999999999876 3599999999999999999999997 788875 4766655
Q ss_pred H
Q 005532 629 L 629 (692)
Q Consensus 629 ~ 629 (692)
.
T Consensus 241 ~ 241 (258)
T PRK14241 241 F 241 (258)
T ss_pred H
Confidence 4
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=325.65 Aligned_cols=198 Identities=27% Similarity=0.447 Sum_probs=166.6
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------ee
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PN 491 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~ 491 (692)
+++|+++||++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 34799999999999888999999999999999999999999999999999999999999999986542 34
Q ss_pred eecccchhhcCCCccHHHHHHHHhc----cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
|++|.. .+. ..|+.+|+..... ......+.++++.+++.....++++.+|||||+|||+|||||+.+|+||||
T Consensus 85 ~~~q~~--~l~-~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (225)
T PRK10247 85 YCAQTP--TLF-GDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161 (225)
T ss_pred EEeccc--ccc-cccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 666653 344 3599999865321 112335678999999964467899999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEE--CCEEEEecCCh
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVK--GSNLQDYAGDY 625 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~--~g~l~~~~g~~ 625 (692)
||||++||+.+++.+.+.|.++ +.|||+||||++++. .||++++|+ .|++. .|+|
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~--~~~~ 222 (225)
T PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQ--EARY 222 (225)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHh--hhhh
Confidence 9999999999999999998865 459999999999996 599999996 44443 3555
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=304.50 Aligned_cols=209 Identities=25% Similarity=0.436 Sum_probs=178.3
Q ss_pred CCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------------- 160 (692)
++.|+++|+.++||...+|++|||+-.+|+++.|||.+||||||+|+||.=+..|+.|.|.++|..
T Consensus 4 ~~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 4 ENALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred ccceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 346999999999999999999999999999999999999999999999999999999999998632
Q ss_pred ---------ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC
Q 005532 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (692)
Q Consensus 161 ---------~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (692)
.+.++|+|++++...+||.||+..+--.- + .+.
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV-------------L-------------------------g~~ 125 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV-------------L-------------------------GVS 125 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh-------------h-------------------------cCC
Confidence 24899999999988999999986431110 0 012
Q ss_pred cccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHH---HccCCCe
Q 005532 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVP 308 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~---L~~~~~t 308 (692)
..+..+++..+|.++|+. +..+.++..|||||+||++|||||+.+|+++|+|||||+|||+-.-.+... |.+.|.|
T Consensus 126 k~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrT 204 (256)
T COG4598 126 KAEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRT 204 (256)
T ss_pred HHHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCe
Confidence 223345677889999997 567889999999999999999999999999999999999999987776554 5678999
Q ss_pred EEEEecCHHHHHhhcCeEEEEecceEEEeccChHH
Q 005532 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 309 vI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
+++|||.+.|+.+++++|+.+.+|.+ .-.|...+
T Consensus 205 Mv~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P~q 238 (256)
T COG4598 205 MVVVTHEMGFARDVSSHVIFLHQGKI-EEEGPPEQ 238 (256)
T ss_pred EEEEeeehhHHHhhhhheEEeeccee-cccCChHH
Confidence 99999999999999999999999987 45666543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=332.86 Aligned_cols=203 Identities=25% Similarity=0.352 Sum_probs=170.6
Q ss_pred eEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
+|+++|+++.|+ ++.+|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 467999999999999999999999999999999999999999999999986542 34
Q ss_pred eecccchhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
|++|+... .....|+.+|+......+ ....+..+++.+|+. ...++++..|||||||||+|||||+.+|+||
T Consensus 81 ~v~q~~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~ll 158 (274)
T PRK13644 81 IVFQNPET-QFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECL 158 (274)
T ss_pred EEEEChhh-hcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 55654321 234579999987543211 123477889999994 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||++||+.++..+.+.|+++ +.|||++|||++++. .||+|++|++|++.. .|+.+++..
T Consensus 159 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~~~ 224 (274)
T PRK13644 159 IFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH-DADRIIVMDRGKIVL-EGEPENVLS 224 (274)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh-hCCEEEEEECCEEEE-ECCHHHHhc
Confidence 999999999999999999998764 459999999999995 599999999999974 577666543
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-39 Score=368.45 Aligned_cols=214 Identities=27% Similarity=0.433 Sum_probs=168.0
Q ss_pred CCCcEEEEeEEEEeCCe--eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------c
Q 005532 94 ISSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------M 161 (692)
Q Consensus 94 ~~~~l~i~~ls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~ 161 (692)
..+.|+++||+|+|+.. ++|+|+||+|++||++||||+||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 45569999999999765 59999999999999999999999999999999999999999999999854 3
Q ss_pred eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.||||+|++.+ ++.||+|||.....+. ..+++.+++..+. ..+.+..
T Consensus 548 ~ig~V~Q~~~L-f~gSI~eNi~l~~p~~-----~~e~i~~A~~~ag---------------------------~~~fI~~ 594 (709)
T COG2274 548 QVGYVLQDPFL-FSGSIRENIALGNPEA-----TDEEIIEAAQLAG---------------------------AHEFIEN 594 (709)
T ss_pred heeEEcccchh-hcCcHHHHHhcCCCCC-----CHHHHHHHHHHhC---------------------------cHHHHHh
Confidence 69999999876 7899999996432110 0011111111110 0111111
Q ss_pred HhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHH
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL 319 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l 319 (692)
+ ..|+.+..+ .....||||||||++|||||+++|+|||||||||+||+++.+.+.+.|.+ .|+|+|+|||++..+
T Consensus 595 l--P~gy~t~v~-E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti 671 (709)
T COG2274 595 L--PMGYDTPVG-EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI 671 (709)
T ss_pred c--ccccccccc-cCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh
Confidence 1 124433332 33689999999999999999999999999999999999999999988876 469999999999999
Q ss_pred HhhcCeEEEEecceEEEeccChHHHH
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 320 ~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
. .||+|+++++|++ .-.|+.++.+
T Consensus 672 ~-~adrIiVl~~Gki-v~~gs~~ell 695 (709)
T COG2274 672 R-SADRIIVLDQGKI-VEQGSHEELL 695 (709)
T ss_pred h-hccEEEEccCCce-eccCCHHHHH
Confidence 7 4999999999998 4667765543
|
|
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=313.92 Aligned_cols=162 Identities=39% Similarity=0.572 Sum_probs=145.9
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC------------ceEEE
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~------------~~i~~ 165 (692)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 468999999998889999999999999999999999999999999999999999999987632 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++..|+.+|+.
T Consensus 81 ~~q~~~~~~~~t~~~~l~-------------------------------------------------------------- 98 (178)
T cd03229 81 VFQDFALFPHLTVLENIA-------------------------------------------------------------- 98 (178)
T ss_pred EecCCccCCCCCHHHhee--------------------------------------------------------------
Confidence 999988777778877641
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~-~~tvI~vsHd~~~l~~ 321 (692)
. .||||||||++|||||+.+|++|||||||++||+.++.++.++|++ . +.|+|+||||++++..
T Consensus 99 ------~------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 ------L------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred ------e------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 0999999999999999999999999999999999999999887753 3 7899999999999999
Q ss_pred hcCeEEEEecce
Q 005532 322 LCTKIVETEMGV 333 (692)
Q Consensus 322 ~~d~i~~l~~G~ 333 (692)
+||+|+++++|+
T Consensus 167 ~~d~i~~l~~g~ 178 (178)
T cd03229 167 LADRVVVLRDGK 178 (178)
T ss_pred hcCEEEEEeCCC
Confidence 999999998873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=328.53 Aligned_cols=200 Identities=24% Similarity=0.435 Sum_probs=161.0
Q ss_pred CCcEEEEeEEEEeCC---eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------c
Q 005532 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------M 161 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~ 161 (692)
.++|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. .
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 456999999999975 369999999999999999999999999999999999999999999998753 2
Q ss_pred eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.|+|++|++.++ ..||.+|+...+... .. ..+.. . .....+.+
T Consensus 89 ~i~~~~q~~~l~-~~tv~~nl~~~~~~~-~~----~~~~~------------------------~-------~~~~~~~~ 131 (226)
T cd03248 89 KVSLVGQEPVLF-ARSLQDNIAYGLQSC-SF----ECVKE------------------------A-------AQKAHAHS 131 (226)
T ss_pred hEEEEecccHHH-hhhHHHHhccccCCC-CH----HHHHH------------------------H-------HHHcCcHH
Confidence 599999998765 469999985322100 00 00000 0 00011234
Q ss_pred Hhhhc--CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHH
Q 005532 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (692)
Q Consensus 242 ll~~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~ 317 (692)
+++.+ |+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++
T Consensus 132 ~l~~l~~gl~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~ 210 (226)
T cd03248 132 FISELASGYD-TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLS 210 (226)
T ss_pred HHHhcccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 55556 665 346778999999999999999999999999999999999999999999888753 3689999999999
Q ss_pred HHHhhcCeEEEEecce
Q 005532 318 FLDQLCTKIVETEMGV 333 (692)
Q Consensus 318 ~l~~~~d~i~~l~~G~ 333 (692)
++.. ||+|+++++|+
T Consensus 211 ~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 211 TVER-ADQILVLDGGR 225 (226)
T ss_pred HHHh-CCEEEEecCCc
Confidence 9965 99999999885
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=330.08 Aligned_cols=205 Identities=23% Similarity=0.349 Sum_probs=171.8
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce------
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------ 489 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~------ 489 (692)
..++|+++||++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34579999999999988899999999999999999999999999999999999974 8999999986542
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHhc--c-----cc-HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAAE--D-----WR-IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARL 552 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~~--~-----~~-~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv 552 (692)
.+|+.|.. .+.+ .|+.+|+..... . .. ...+..+++.+++.. ...++++.+|||||||||
T Consensus 96 ~~~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv 172 (267)
T PRK14235 96 VELRARVGMVFQKP--NPFP-KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRL 172 (267)
T ss_pred HHHhhceEEEecCC--CCCC-CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHH
Confidence 24555542 3433 599999975421 1 11 234678899999853 245788999999999999
Q ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 553 ~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|||||+.+|+||||||||++||+.++..+.+.|+++. .|||+||||++++..+||++++|++|++.. .|..+++.
T Consensus 173 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~-~g~~~~~~ 250 (267)
T PRK14235 173 CIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVE-VGDTEKMF 250 (267)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEE-eCCHHHHH
Confidence 99999999999999999999999999999999998763 599999999999999999999999999985 46665553
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=328.15 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=171.8
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC----CeeEEEECCccc--------eee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP----RGGEVLLGEHNV--------LPN 491 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p----~~G~i~~~~~~~--------~~~ 491 (692)
+|+++|++++| ++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++ ..+
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 58999999999 57899999999999999999999999999999999999999 999999988764 245
Q ss_pred eecccchhhcCCCccHHHHHHHHh---c-cccHHHHHHHHhhcCCCcc--cccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAA---E-DWRIDDIKGLLGRCNFKAD--MLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~---~-~~~~~~~~~~L~~~~l~~~--~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
|++|+....+.+..|+.+++.... . ......+.++++.+++... ..++++.+|||||||||+|||||+.+|+||
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 666654222445568877765421 1 1223467889999999532 468899999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
||||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||++++|++|++.. .|+.+++..
T Consensus 163 lLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~~ 230 (254)
T PRK10418 163 IADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVE-QGDVETLFN 230 (254)
T ss_pred EEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHhh
Confidence 999999999999999999988764 4599999999999999999999999999974 576666543
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=327.30 Aligned_cols=185 Identities=29% Similarity=0.408 Sum_probs=155.6
Q ss_pred eeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc-----eEEEEcccCccCCCCCHHHHHHhhhH
Q 005532 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFK 187 (692)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~-----~i~~v~Q~~~~~~~~Tv~e~i~~~~~ 187 (692)
|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. ..+|++|++.+++..|+.+|+...+.
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999987432 36899999988788899999853210
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHH
Q 005532 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (692)
Q Consensus 188 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqR 267 (692)
.. .. ..+......++.++++.+|+. ...++++.+||||||||
T Consensus 81 ~~-------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qr 122 (230)
T TIGR01184 81 RV-------------LP------------------------DLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQR 122 (230)
T ss_pred hc-------------cc------------------------CCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHH
Confidence 00 00 000111234566788888986 56788899999999999
Q ss_pred HHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEecceEE
Q 005532 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 268 vaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~ 335 (692)
|+|||||+.+|+||||||||+|||+.+++++.+.|++ .++|||+||||++++..+||+|+++++|++.
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~ 194 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA 194 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe
Confidence 9999999999999999999999999999999887753 4889999999999999999999999999874
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=309.07 Aligned_cols=162 Identities=25% Similarity=0.439 Sum_probs=146.1
Q ss_pred EEEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCCC
Q 005532 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (692)
Q Consensus 98 l~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~ 176 (692)
|+++|++++|++ +++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYL-PLG 78 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCcc-ccc
Confidence 468999999964 57999999999999999999999999999999999999999999999853 589999999875 467
Q ss_pred CHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccc
Q 005532 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (692)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (692)
|+.||+.. + .
T Consensus 79 tv~~nl~~--------------------------------------------------------------~--------~ 88 (166)
T cd03223 79 TLREQLIY--------------------------------------------------------------P--------W 88 (166)
T ss_pred cHHHHhhc--------------------------------------------------------------c--------C
Confidence 89888630 0 2
Q ss_pred cccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhcCeEEEEecc
Q 005532 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (692)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~d~i~~l~~G 332 (692)
+.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++.+.|+|+||||.++. .+||+|++++++
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~ 163 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGE 163 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCC
Confidence 578999999999999999999999999999999999999999999988889999999999876 589999999765
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-38 Score=326.91 Aligned_cols=204 Identities=25% Similarity=0.363 Sum_probs=170.8
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC---CCC--CeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL---EKP--RGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~---~~p--~~G~i~~~~~~~~-------- 489 (692)
++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+ .+| ++|+|.++|.++.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 579999999999988899999999999999999999999999999999997 454 5899999986542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc-------ccHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED-------WRIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~-------~~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|+. .+.. .|+.+|+...... +....+.++++.+++.. ...++++.+|||||||||+||
T Consensus 82 ~~~~i~~v~q~~--~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14245 82 LRKNVGMVFQRP--NPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIA 158 (250)
T ss_pred HhhheEEEecCC--ccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHH
Confidence 34555543 3433 5999998753211 11234678889898842 346788999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||+.+|+||||||||++||+.+++++.+.|+++. .|||+||||++++..+||+|++|++|++.. .|..+++.+
T Consensus 159 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~-~~~~~~~~~ 234 (250)
T PRK14245 159 RAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVE-YDDTKKIFT 234 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-ECCHHHHhc
Confidence 99999999999999999999999999999998763 599999999999999999999999999974 477666643
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=332.03 Aligned_cols=205 Identities=27% Similarity=0.422 Sum_probs=172.2
Q ss_pred CCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-----
Q 005532 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (692)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~----- 489 (692)
.++++|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 46678999999999998889999999999999999999999999999999999987 68999999886541
Q ss_pred -------eeeecccchhhcCCCccHHHHHHHHhcc--c---cHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHH
Q 005532 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED--W---RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~---~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+. .+.+ .|+.+|+...... . ...++..+++.+++.. ...++++.+|||||||||+|
T Consensus 115 ~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~L 191 (285)
T PRK14254 115 PVALRRRIGMVFQKP--NPFP-KSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCI 191 (285)
T ss_pred hHhhhccEEEEecCC--ccCc-CCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHH
Confidence 34666653 3444 4999998754211 1 1235778898988842 34678999999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEE-EEECCEEEEecCChhHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVV-EVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~-~l~~g~l~~~~g~~~~~ 628 (692)
||||+.+|+||||||||++||+.+++.+.++|+++ +.|||+||||++++..+|||++ +|++|++... |..+++
T Consensus 192 AraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~-g~~~~~ 267 (285)
T PRK14254 192 ARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEF-DDTDKI 267 (285)
T ss_pred HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEe-CCHHHH
Confidence 99999999999999999999999999999999877 3699999999999999999975 5799999854 655544
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=343.36 Aligned_cols=195 Identities=24% Similarity=0.376 Sum_probs=169.3
Q ss_pred EEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------------eeeecccc
Q 005532 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNYFEQNQ 497 (692)
Q Consensus 432 ~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------------~~~~~q~~ 497 (692)
+.|+++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~- 79 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ- 79 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC-
Confidence 3578888999999999999999999999999999999999999999999999986542 3566664
Q ss_pred hhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 498 AEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 498 ~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
..+++.+|+.+|+..... .+. .+.+.++|+.+|+. ...++++.+|||||||||+|||||+.+|+||||||||
T Consensus 80 -~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~-~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~ 157 (363)
T TIGR01186 80 -FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLE-EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAF 157 (363)
T ss_pred -CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 467788999999976532 122 24578899999994 6789999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 572 NHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
++||+.+++.+.+.|.++ +.|||+||||++++.++||+|++|++|+++. .|..+++..
T Consensus 158 saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~-~g~~~ei~~ 219 (363)
T TIGR01186 158 SALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQ-VGTPDEILR 219 (363)
T ss_pred ccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEe-eCCHHHHHh
Confidence 999999999999988754 5699999999999999999999999999975 466666544
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=361.86 Aligned_cols=207 Identities=31% Similarity=0.461 Sum_probs=172.8
Q ss_pred CCcEEEEeEEEEeCC-----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEC-CC---------
Q 005532 95 SSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KS--------- 159 (692)
Q Consensus 95 ~~~l~i~~ls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~-~~--------- 159 (692)
.++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 457999999999952 469999999999999999999999999999999999999999999984 31
Q ss_pred -------CceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCc
Q 005532 160 -------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (692)
Q Consensus 160 -------~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (692)
...|+|++|++.+++..||.+|+...+. +. ...
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~~-------------------------~~~ 396 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG---------------LE-------------------------LPD 396 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH---------------cC-------------------------CCH
Confidence 1249999999888788899999853210 00 000
Q ss_pred ccHHHHHHHHhhhcCCCc----cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----c
Q 005532 233 DTLDAKVSKLMPELGFTA----DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (692)
Q Consensus 233 ~~~~~~i~~ll~~lgl~~----~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~ 304 (692)
.....++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|+ +
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 012245667888899863 24689999999999999999999999999999999999999999999988774 3
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChH
Q 005532 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 305 ~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
.+.|||+||||++++..+||+|+++++|++. +.|...
T Consensus 477 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~ 513 (520)
T TIGR03269 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPE 513 (520)
T ss_pred cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHH
Confidence 5899999999999999999999999999974 556543
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=319.61 Aligned_cols=192 Identities=27% Similarity=0.448 Sum_probs=165.6
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
++++||++.|+. .+.++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 468999999974 578999999999999999999999999999999999999999999987642 3466665
Q ss_pred chhhcCCCccHHHHHHHHhc-c-c----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 497 QAEALDLDKTVLETVAEAAE-D-W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~-~-~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
+ .+++..|+.+|+..... . . ....+.++++.+++. +..++++.+|||||||||+|||||+.+|+|||||||
T Consensus 79 ~--~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 155 (213)
T TIGR01277 79 N--NLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIA-DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEP 155 (213)
T ss_pred C--ccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcH-HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3 46667899999875321 1 1 123567889999995 567899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEe
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDY 621 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~ 621 (692)
|++||+.+++.+.++|.++ +.|||+||||.+++..+||++++|++|++...
T Consensus 156 t~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~ 210 (213)
T TIGR01277 156 FSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVV 210 (213)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEe
Confidence 9999999999999988764 45999999999999999999999999999754
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=332.05 Aligned_cols=203 Identities=27% Similarity=0.428 Sum_probs=173.3
Q ss_pred ceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------e
Q 005532 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (692)
Q Consensus 423 ~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~ 490 (692)
++|+++||++.|++ +++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 47999999999974 56999999999999999999999999999999999999999999999987652 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+|++|+.. .+.+..|+.+|+....... . ...+..+++.+|+. ...++++.+|||||||||+|||||+.+|+|
T Consensus 84 ~~~~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~l 161 (279)
T PRK13635 84 GMVFQNPD-NQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDI 161 (279)
T ss_pred EEEEeCHH-HhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 56666532 2345679999997542211 1 23478889999995 678999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||||||++||+.++..+.+.|+++ +.|||+||||++++.. ||+|++|++|++. +.|+.++..
T Consensus 162 llLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~-~d~i~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13635 162 IILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQ-ADRVIVMNKGEIL-EEGTPEEIF 228 (279)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999864 4599999999999975 9999999999987 457766554
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=322.20 Aligned_cols=191 Identities=30% Similarity=0.501 Sum_probs=161.1
Q ss_pred EEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc----------eeee
Q 005532 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (692)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~----------~~~~ 492 (692)
|+++|+++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|.++ ..+|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 789999999975 5799999999999999999999999999999999999999999999988654 1356
Q ss_pred ecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccc-----------cCCCCCHHHHHHHHHHHHhccC
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-----------KVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~-----------~~~~LSgGqkqrv~LAral~~~ 561 (692)
++|+. .+.+ .|+.+|+...........+..+++.+++. +..++ .+.+|||||||||+|||||+.+
T Consensus 83 ~~q~~--~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~ 158 (220)
T cd03245 83 VPQDV--TLFY-GTLRDNITLGAPLADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLND 158 (220)
T ss_pred eCCCC--cccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcH-HHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcC
Confidence 66653 3333 69999986543222334566777777774 33444 3469999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|++|||||||++||+.++..+.+.|+++. .|||+||||++++ .+||++++|++|++..
T Consensus 159 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 159 PPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 99999999999999999999999998874 5999999999987 6899999999999864
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=319.92 Aligned_cols=189 Identities=21% Similarity=0.308 Sum_probs=161.3
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-------ceEEEEccc
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQE 169 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-------~~i~~v~Q~ 169 (692)
+|+++|+++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|++|.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 5899999999998889999999999999999999999999999999999999999999998743 248999998
Q ss_pred CccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCC
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+++..|+.+|+..... + .+ ..+.++.++++.+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~ 118 (207)
T PRK13539 82 NAMKPALTVAENLEFWAA---------------F--------------------------LG--GEELDIAAALEAVGLA 118 (207)
T ss_pred CcCCCCCcHHHHHHHHHH---------------h--------------------------cC--CcHHHHHHHHHHcCCH
Confidence 877778899999742100 0 00 0012356778888886
Q ss_pred ccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCeE
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~i 326 (692)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+|||+++++.. |++
T Consensus 119 -~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 119 -PLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred -HHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 466888999999999999999999999999999999999999999999887753 58999999999999987 888
Q ss_pred EEEec
Q 005532 327 VETEM 331 (692)
Q Consensus 327 ~~l~~ 331 (692)
+.++.
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 87743
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=323.84 Aligned_cols=201 Identities=28% Similarity=0.356 Sum_probs=165.2
Q ss_pred EEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC---CCccEEEECCCC-------ceE
Q 005532 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN-------MKI 163 (692)
Q Consensus 98 l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~---p~~G~I~~~~~~-------~~i 163 (692)
+.++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++ |++|+|.++|.+ ..|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i 83 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCV 83 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccE
Confidence 678999999975 479999999999999999999999999999999999999 999999998743 359
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH-H
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-L 242 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-l 242 (692)
+|++|++.+++..|+.||+....... ... .........++.. +
T Consensus 84 ~~~~q~~~~~~~~tv~enl~~~~~~~-------------~~~-----------------------~~~~~~~~~~~~~~~ 127 (226)
T cd03234 84 AYVRQDDILLPGLTVRETLTYTAILR-------------LPR-----------------------KSSDAIRKKRVEDVL 127 (226)
T ss_pred EEeCCCCccCcCCcHHHHHHHHHHhh-------------ccc-----------------------ccchHHHHHHHHHHH
Confidence 99999998878889999985321000 000 0000001122333 6
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCH-HH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR-AF 318 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~-~~ 318 (692)
++.+++. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|+ +.+.|+|++||+. +.
T Consensus 128 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~ 206 (226)
T cd03234 128 LRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSD 206 (226)
T ss_pred HHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHH
Confidence 7777775 45678899999999999999999999999999999999999999999988774 3478999999998 68
Q ss_pred HHhhcCeEEEEecceEE
Q 005532 319 LDQLCTKIVETEMGVSR 335 (692)
Q Consensus 319 l~~~~d~i~~l~~G~~~ 335 (692)
+..+||+|+++++|++.
T Consensus 207 ~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 207 LFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHhCCEEEEEeCCEEE
Confidence 99999999999999874
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=324.93 Aligned_cols=206 Identities=22% Similarity=0.383 Sum_probs=171.0
Q ss_pred EEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-C----CccEEEECCCC--------
Q 005532 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-P----DSGNVIKAKSN-------- 160 (692)
Q Consensus 98 l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-p----~~G~I~~~~~~-------- 160 (692)
++++|++.+|.. .++++||||+|++||++||||++||||||+.+.|+|+++ | .+|+|.++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999954 369999999999999999999999999999999999998 4 56899998752
Q ss_pred ------ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhc-C
Q 005532 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV-N 231 (692)
Q Consensus 161 ------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (692)
..|+|++|+|. +.+..||.+-+...+.. .... .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~--------------------------------------h~~~~~ 123 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRL--------------------------------------HGKGLS 123 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHH--------------------------------------hhcchh
Confidence 36999999984 44556777665322110 0000 1
Q ss_pred cccHHHHHHHHhhhcCCCcc--ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc----cC
Q 005532 232 LDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (692)
Q Consensus 232 ~~~~~~~i~~ll~~lgl~~~--~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~----~~ 305 (692)
..+..+++.++|+.+||++. ..+.++.+|||||+|||.||.||+.+|+|||.||||++||......+.++|+ +.
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~ 203 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 12345678889999999865 6789999999999999999999999999999999999999999998888764 47
Q ss_pred CCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChH
Q 005532 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 306 ~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~ 342 (692)
|.|+|+||||+..+.++||+|++|..|++.. .|+..
T Consensus 204 ~~aiilITHDl~vva~~aDri~VMYaG~iVE-~g~~~ 239 (316)
T COG0444 204 GTALILITHDLGVVAEIADRVAVMYAGRIVE-EGPVE 239 (316)
T ss_pred CCEEEEEeCCHHHHHHhcceEEEEECcEEEE-eCCHH
Confidence 9999999999999999999999999999854 45543
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=326.25 Aligned_cols=203 Identities=24% Similarity=0.335 Sum_probs=169.3
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CC---CeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KP---RGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~--~p---~~G~i~~~~~~~~-------- 489 (692)
++|+++||+++|+++.+|+++||+|++||++||+||||||||||+++|+|+. .| ++|+|.++|.++.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4799999999999888999999999999999999999999999999999985 46 5999999986541
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|+. .+.. .|+.+|+...... .. ...+..+++.+++.. +..++++.+|||||||||+||
T Consensus 84 ~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14239 84 LRKEIGMVFQQP--NPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIA 160 (252)
T ss_pred hhhcEEEEecCC--ccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHH
Confidence 34566653 3433 7999998754211 11 134566788888742 346788999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|..++..
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 235 (252)
T PRK14239 161 RVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIE-YNDTKQMF 235 (252)
T ss_pred HHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 3599999999999999999999999999985 46655543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-38 Score=325.70 Aligned_cols=204 Identities=24% Similarity=0.360 Sum_probs=171.4
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~--p---~~G~i~~~~~~~~-------- 489 (692)
..|+++|++++|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 35899999999998889999999999999999999999999999999999986 4 6899999986542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|+ ..+.+..|+.+|+...... .. ...+.++++.+++.. +..++.+.+|||||||||+||
T Consensus 83 ~~~~i~~~~q~--~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~la 160 (252)
T PRK14256 83 IRRRVGMVFQK--PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIA 160 (252)
T ss_pred hhccEEEEecC--CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHH
Confidence 3455554 3456678999998753211 11 134677888888743 345678999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++..+||++++|++|++... |..+++.
T Consensus 161 ral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~~ 235 (252)
T PRK14256 161 RTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVEC-GETKKIF 235 (252)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEe-CCHHHHH
Confidence 9999999999999999999999999999999876 45999999999999999999999999999854 6655553
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-38 Score=318.49 Aligned_cols=195 Identities=27% Similarity=0.385 Sum_probs=152.3
Q ss_pred EEEEeEEEEeCCe-----eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCcc
Q 005532 98 VKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (692)
Q Consensus 98 l~i~~ls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (692)
|+++|++++|++. ++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCchh
Confidence 4689999999764 699999999999999999999999999999999999999999999986 89999999987
Q ss_pred CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccc
Q 005532 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (692)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (692)
+ ..|++||+....... . +......+. . .+...+... ..|+. ..
T Consensus 78 ~-~~t~~enl~~~~~~~--~----~~~~~~~~~------------------------~---~l~~~~~~~--~~~~~-~~ 120 (204)
T cd03250 78 Q-NGTIRENILFGKPFD--E----ERYEKVIKA------------------------C---ALEPDLEIL--PDGDL-TE 120 (204)
T ss_pred c-cCcHHHHhccCCCcC--H----HHHHHHHHH------------------------c---CcHHHHHhc--cCccc-ce
Confidence 5 679999986321100 0 000000000 0 000011110 11222 23
Q ss_pred cccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHH-HHc---cCCCeEEEEecCHHHHHhhcCeEEE
Q 005532 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (692)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~-~L~---~~~~tvI~vsHd~~~l~~~~d~i~~ 328 (692)
.++++.+||||||||++|||||+.+|++|||||||++||+.+.+++.+ +++ +.+.|||+|||+++.+.. ||++++
T Consensus 121 ~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~ 199 (204)
T cd03250 121 IGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVV 199 (204)
T ss_pred ecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEE
Confidence 456689999999999999999999999999999999999999988876 343 347899999999999998 999999
Q ss_pred Eecce
Q 005532 329 TEMGV 333 (692)
Q Consensus 329 l~~G~ 333 (692)
+++|+
T Consensus 200 l~~G~ 204 (204)
T cd03250 200 LDNGR 204 (204)
T ss_pred EeCCC
Confidence 98874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=318.04 Aligned_cols=185 Identities=25% Similarity=0.364 Sum_probs=155.7
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEcc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (692)
|+++|+++.|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 468999999999899999999999999999999999999999999999999999999998753 35899999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..|+.+|+..... . .. .. +.++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~--------------------------~~-~~-~~~~~~~l~~~~l 117 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAA---------------I--------------------------HG-GA-QRTIEDALAAVGL 117 (198)
T ss_pred CcccccCCcHHHHHHHHHH---------------H--------------------------cC-Cc-HHHHHHHHHHcCC
Confidence 9887777899999742100 0 00 00 2345567788888
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCe
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~ 325 (692)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+|||+...+ .|++
T Consensus 118 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~ 194 (198)
T TIGR01189 118 T-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAR 194 (198)
T ss_pred H-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceE
Confidence 6 456888999999999999999999999999999999999999999999888753 588999999998655 4666
Q ss_pred EEE
Q 005532 326 IVE 328 (692)
Q Consensus 326 i~~ 328 (692)
++.
T Consensus 195 ~~~ 197 (198)
T TIGR01189 195 ELR 197 (198)
T ss_pred Eee
Confidence 654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-38 Score=325.91 Aligned_cols=201 Identities=26% Similarity=0.387 Sum_probs=170.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC---CCeeEEEECCccce----------e
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK---PRGGEVLLGEHNVL----------P 490 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~---p~~G~i~~~~~~~~----------~ 490 (692)
+++++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++. .
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4789999999998889999999999999999999999999999999999974 79999999987652 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhc--cc------cHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHHHhc
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAE--DW------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~--~~------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
+|++|.. .+.+ .|+.+|+..... .+ ...++..+++.+++.. ...++++.+|||||||||+|||||+
T Consensus 82 ~~~~q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 82 GMVFQQP--NVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred EEEecCC--cccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 5666653 3443 699999865321 10 1224678899999852 3467889999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++.. |..+++
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~ 228 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEF-GESKEF 228 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEE-CCHHHH
Confidence 999999999999999999999999999865 46999999999999999999999999999854 555444
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=318.64 Aligned_cols=183 Identities=21% Similarity=0.331 Sum_probs=157.0
Q ss_pred EEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEEcc
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (692)
Q Consensus 98 l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v~Q 168 (692)
|+++|++++|+++++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 789999999998889999999999999999999999999999999999999999999998753 25999999
Q ss_pred cCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCC
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..||.+|+...... . ..+..+.++++.+++
T Consensus 82 ~~~~~~~~tv~~~~~~~~~~------------------------------------------~--~~~~~~~~~l~~~~l 117 (200)
T PRK13540 82 RSGINPYLTLRENCLYDIHF------------------------------------------S--PGAVGITELCRLFSL 117 (200)
T ss_pred ccccCcCCCHHHHHHHHHhc------------------------------------------C--cchHHHHHHHHHcCC
Confidence 98877789999997521100 0 001245567777888
Q ss_pred CccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHHHhhcCe
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l~~~~d~ 325 (692)
. +..++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+|||+.+++.. ||+
T Consensus 118 ~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d~ 195 (200)
T PRK13540 118 E-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-ADY 195 (200)
T ss_pred c-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cch
Confidence 6 456888899999999999999999999999999999999999999999988763 58899999999999976 665
Q ss_pred E
Q 005532 326 I 326 (692)
Q Consensus 326 i 326 (692)
-
T Consensus 196 ~ 196 (200)
T PRK13540 196 E 196 (200)
T ss_pred h
Confidence 3
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=326.93 Aligned_cols=206 Identities=27% Similarity=0.376 Sum_probs=172.1
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CeeEEEECCccce------
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL------ 489 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~--p---~~G~i~~~~~~~~------ 489 (692)
+.++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++ | ++|+|.++|.++.
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4557999999999998889999999999999999999999999999999999987 3 5999999887542
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHhccc---c----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLA 553 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~ 553 (692)
.+|++|+. .+.+ .|+.+|+......+ . ...+..+++.+++.. +..++++.+||||||||++
T Consensus 89 ~~~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~ 165 (259)
T PRK14274 89 VELRKNIGMVFQKG--NPFP-QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLC 165 (259)
T ss_pred HHHhhceEEEecCC--cccc-cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHH
Confidence 34566543 3434 49999986542211 1 123567788888742 3467899999999999999
Q ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 554 LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||+|+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.++||++++|++|++.. .|+.+++..
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~~ 243 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVE-CNDTNKMFS 243 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEE-ECCHHHHhh
Confidence 999999999999999999999999999999999876 3599999999999999999999999999985 477666643
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=317.36 Aligned_cols=186 Identities=28% Similarity=0.462 Sum_probs=163.0
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------eeeecc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------PNYFEQ 495 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------~~~~~q 495 (692)
|+++||++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 47899999999889999999999999999999999999999999999999999999999886642 245554
Q ss_pred cchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCC
Q 005532 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD 575 (692)
+ ..+.+..|+.+|+...........+.++++.+++. ...++++.+||||||||++|||||+.+|++|||||||++||
T Consensus 81 ~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD 157 (201)
T cd03231 81 A--PGIKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD 157 (201)
T ss_pred c--cccCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Confidence 3 34556789999987654333445678899999995 45788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE
Q 005532 576 IPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (692)
Q Consensus 576 ~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l 613 (692)
+.+++.+.+.|.++ +.|+|+||||...+..+|++++.+
T Consensus 158 ~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 158 KAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 99999999999865 569999999999999999999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=333.78 Aligned_cols=223 Identities=20% Similarity=0.305 Sum_probs=171.8
Q ss_pred CCCCcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCC-----CCccEEEECCCC-------
Q 005532 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (692)
Q Consensus 93 ~~~~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~-----p~~G~I~~~~~~------- 160 (692)
+...+|.++|+++.|+++++|+++||+|++|++++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34457999999999998899999999999999999999999999999999999986 689999998632
Q ss_pred -----ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcC-ccc
Q 005532 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LDT 234 (692)
Q Consensus 161 -----~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (692)
..|+|++|++.++. .||++|+...+.... .... .....++ ... ...
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~-----------~~~~-----~~~~~~~-----------~~~~~~~ 172 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHG-----------DINT-----GLLARLL-----------GRDDKDA 172 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcc-----------cccc-----ccccccc-----------ccCchHH
Confidence 25999999987755 599999864321000 0000 0000000 000 011
Q ss_pred HHHHHHHHhhhcCCCc---cccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccC--CCeE
Q 005532 235 LDAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPM 309 (692)
Q Consensus 235 ~~~~i~~ll~~lgl~~---~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~--~~tv 309 (692)
...++.++++.+++.. ...++++.+|||||+|||+|||||+.+|+||||||||+|||+.++.++.++|++. +.||
T Consensus 173 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~ti 252 (305)
T PRK14264 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTV 252 (305)
T ss_pred HHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEE
Confidence 2345566777777631 3457788999999999999999999999999999999999999999998887542 5899
Q ss_pred EEEecCHHHHHhhcCeE-EEEecceEEEeccChHHH
Q 005532 310 VIISHDRAFLDQLCTKI-VETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 310 I~vsHd~~~l~~~~d~i-~~l~~G~~~~~~G~y~~~ 344 (692)
|+|||+++++..+||++ +++++|++. ..|...++
T Consensus 253 iivtH~~~~i~~~~d~i~~~l~~G~i~-~~g~~~~~ 287 (305)
T PRK14264 253 VVVTHNMQQAARISDQTAVFLTGGELV-EYDDTDKI 287 (305)
T ss_pred EEEEcCHHHHHHhcCEEEEEecCCEEE-EeCCHHHH
Confidence 99999999999999997 567999984 45665443
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=328.25 Aligned_cols=193 Identities=25% Similarity=0.350 Sum_probs=163.2
Q ss_pred CCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-----
Q 005532 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (692)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~----- 489 (692)
++.++|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 9 ~~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred CCCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 34467999999999998889999999999999999999999999999999999987 69999999886541
Q ss_pred -------eeeecccchhhcCCCccHHHHHHHHhccc-----cHHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHH
Q 005532 490 -------PNYFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~~~~~~~~~-----~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+. .+.+ .|+.+|+....... ..+.+..+++.+++. ....++++.+|||||||||+|
T Consensus 89 ~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~l 165 (269)
T PRK14259 89 PVEVRRRIGMVFQQP--NPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCI 165 (269)
T ss_pred HHHHhhceEEEccCC--ccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHH
Confidence 35666653 3444 59999987543211 123456678887763 234688899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEEC
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKG 615 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~ 615 (692)
||||+.+|+||||||||++||+.+++.+.++|.++. .|||+||||++++..+||++++|++
T Consensus 166 aral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 166 ARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999998763 5999999999999999999999996
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-38 Score=366.18 Aligned_cols=219 Identities=25% Similarity=0.434 Sum_probs=172.3
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC---CCCeeEEEECCccc-----ee--
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLLGEHNV-----LP-- 490 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~---~p~~G~i~~~~~~~-----~~-- 490 (692)
...+|+++|++++|+++.+|+|+||+|.+|+++||||+|||||||||++|+|.. .|++|+|.+.++.+ ..
T Consensus 174 ~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~ 253 (718)
T PLN03073 174 AIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQ 253 (718)
T ss_pred CceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHH
Confidence 445799999999999888999999999999999999999999999999999964 57889987533221 00
Q ss_pred -----------------eeecccchhhcC--------------CCccHHHHHHHH------hcccc-HHHHHHHHhhcCC
Q 005532 491 -----------------NYFEQNQAEALD--------------LDKTVLETVAEA------AEDWR-IDDIKGLLGRCNF 532 (692)
Q Consensus 491 -----------------~~~~q~~~~~l~--------------~~~tv~e~~~~~------~~~~~-~~~~~~~L~~~~l 532 (692)
+++.|....... +...+.+.+... .+.|. ..++..+|..+||
T Consensus 254 ~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl 333 (718)
T PLN03073 254 CVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSF 333 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCC
Confidence 111111000000 000011111110 11222 2457789999999
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcCceEEEEecCHHHHHhhccEEEE
Q 005532 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVE 612 (692)
Q Consensus 533 ~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~~tviivSHd~~~l~~~~d~i~~ 612 (692)
.....++++.+|||||||||+||++|+.+|+||||||||||||+.++.+|.++|+++++|||+||||++++..+||+|++
T Consensus 334 ~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsHd~~~l~~~~d~i~~ 413 (718)
T PLN03073 334 TPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSHAREFLNTVVTDILH 413 (718)
T ss_pred ChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEE
Confidence 75667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCEEEEecCChhHHHHHhHHHHHHH
Q 005532 613 VKGSNLQDYAGDYNYYLEKNLDAREKE 639 (692)
Q Consensus 613 l~~g~l~~~~g~~~~~~~~~~~~~~~~ 639 (692)
|++|++..|.|+|+.|...+.++...+
T Consensus 414 l~~g~i~~~~g~~~~~~~~~~~~~~~~ 440 (718)
T PLN03073 414 LHGQKLVTYKGDYDTFERTREEQLKNQ 440 (718)
T ss_pred EECCEEEEeCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988766544433
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=325.82 Aligned_cols=202 Identities=25% Similarity=0.375 Sum_probs=169.4
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~-------- 489 (692)
++|+++|++++|+++++|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 36899999999998899999999999999999999999999999999999997 47999999886541
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|+.|+. .+. ..|+.+|+...... .. ...+..+++.+++. ....++++.+||||||||++||
T Consensus 83 ~~~~i~~~~q~~--~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 159 (251)
T PRK14251 83 LRKEVGMVFQQP--TPF-PFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIA 159 (251)
T ss_pred hhccEEEEecCC--ccC-CCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHH
Confidence 24555543 343 47999998754211 11 13466788888883 1345788999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||+|++|++|++... |..+++
T Consensus 160 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 233 (251)
T PRK14251 160 RALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA-GPTEEM 233 (251)
T ss_pred HHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEe-CCHHHH
Confidence 9999999999999999999999999999999876 46999999999999999999999999999864 555444
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=325.16 Aligned_cols=204 Identities=25% Similarity=0.360 Sum_probs=168.9
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC--C---CeeEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--P---RGGEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~--p---~~G~i~~~~~~~~------- 489 (692)
+++|+++||++.|+++.+|+++||+|.+||++||+|+||||||||+++|+|+.+ | ++|+|.++|.++.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 457999999999998889999999999999999999999999999999999875 5 5999999886541
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|+.|+. .+.+ .|+.+|+...... .. ...+...++.+++. ....++++.+|||||||||+|
T Consensus 83 ~~~~~i~~~~q~~--~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~l 159 (252)
T PRK14255 83 QLRKQVGMVFQQP--NPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCI 159 (252)
T ss_pred HhcCeEEEEECCC--ccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHH
Confidence 34566543 3444 6999998754211 11 12355667777663 234678899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||+|+.+|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++..+...++.|
T Consensus 160 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 160 ARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMF 235 (252)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999999999999999999999999999999876 369999999999999999999999999998765444444
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=324.66 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=168.9
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----eeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~-----~G~i~~~~~~~~--------- 489 (692)
+|+++|+++.|+++++|+++||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 689999999999889999999999999999999999999999999999999874 899999886542
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc--c-cH----HHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHHHH
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--W-RI----DDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~-~~----~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|++|+ ..+.+..|+.+|+...... . .. +.+..++..+++. ....++++.+||||||||++|||
T Consensus 84 ~~~i~~~~q~--~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14272 84 RRRVGMVFQK--PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIAR 161 (252)
T ss_pred hceeEEEecc--CccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHH
Confidence 3455654 3456678999999754221 1 11 2344556666542 13457889999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|+.+|+||||||||++||+.+++.+.+.|+++. .|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 162 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 235 (252)
T PRK14272 162 ALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVE-HGPTDQLF 235 (252)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999998764 699999999999999999999999999984 46655553
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=323.80 Aligned_cols=191 Identities=25% Similarity=0.332 Sum_probs=164.5
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhcCCC
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~ 504 (692)
+.+++++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. ... ....+.+.
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~--~~~--~~~~~~~~ 98 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSS--LLG--LGGGFNPE 98 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEch--hhc--ccccCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999986532 111 11234567
Q ss_pred ccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHH
Q 005532 505 KTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578 (692)
Q Consensus 505 ~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~ 578 (692)
.|+.+|+......+ . ...+..+++.+++. +..++++.+|||||||||+|||+|+.+|++|||||||++||+.+
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~ 177 (224)
T cd03220 99 LTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELG-DFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAF 177 (224)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 89999987542211 1 12466788888985 56789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 579 KEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 579 ~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
+..+.+.|.++ +.|||+||||.+++..+||++++|++|++..
T Consensus 178 ~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 178 QEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 99999998765 4699999999999999999999999999864
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-38 Score=362.82 Aligned_cols=209 Identities=27% Similarity=0.424 Sum_probs=165.1
Q ss_pred cEEEEeEEEEe-CCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc----------eEEE
Q 005532 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~----------~i~~ 165 (692)
.|+++||+|.| +++++|+|+||+|++|+++||||+||||||||+++|+|++ |++|+|.++|.+. .|+|
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~ 427 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427 (588)
T ss_pred eEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEE
Confidence 49999999766 4567999999999999999999999999999999999999 9999999998532 5999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
|+|+|++ ++.||+|||..+-.+ .. -+++.++++.+. +. +.+..
T Consensus 428 v~Q~~~L-F~~TI~eNI~~g~~~-~~----~eei~~al~~a~---------------------------l~----~~i~~ 470 (588)
T PRK11174 428 VGQNPQL-PHGTLRDNVLLGNPD-AS----DEQLQQALENAW---------------------------VS----EFLPL 470 (588)
T ss_pred ecCCCcC-CCcCHHHHhhcCCCC-CC----HHHHHHHHHHhC---------------------------HH----HHHHh
Confidence 9999988 678999999743110 00 012222222111 11 12222
Q ss_pred c--CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 005532 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~ 321 (692)
+ |+.+..+++ ..+||||||||++|||||+++|+|||||||||+||+++.+.+.+.|.+ .++|+|+|||+++.+..
T Consensus 471 lp~G~dT~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~ 549 (588)
T PRK11174 471 LPQGLDTPIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQ 549 (588)
T ss_pred cccccccccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHh
Confidence 2 444433333 678999999999999999999999999999999999999999887754 47999999999998865
Q ss_pred hcCeEEEEecceEEEeccChHHHHH
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 322 ~~d~i~~l~~G~~~~~~G~y~~~~~ 346 (692)
||+|+++++|++ .-.|++++.+.
T Consensus 550 -aD~Iivl~~G~i-~e~G~~~eL~~ 572 (588)
T PRK11174 550 -WDQIWVMQDGQI-VQQGDYAELSQ 572 (588)
T ss_pred -CCEEEEEeCCeE-eecCCHHHHHh
Confidence 999999999998 46788765543
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=328.78 Aligned_cols=201 Identities=26% Similarity=0.363 Sum_probs=170.7
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC--------eeEEEECCccce------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--------GGEVLLGEHNVL------ 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~--------~G~i~~~~~~~~------ 489 (692)
+|+++|++++|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 488999999999889999999999999999999999999999999999999998 999999986542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhc-------cc---cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE-------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~-------~~---~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|.. .+.+..|+.+|+..... .+ ....+..+++.+++. ...++++.+|||||||||+||
T Consensus 81 ~~~~~~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (272)
T PRK13547 81 LARLRAVLPQAA--QPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGAT-ALVGRDVTTLSGGELARVQFA 157 (272)
T ss_pred HHhhcEEecccC--CCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 24556543 23346899999865321 01 123467889999995 567899999999999999999
Q ss_pred HHhc---------cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEec
Q 005532 556 KFMV---------KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYA 622 (692)
Q Consensus 556 ral~---------~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~ 622 (692)
|||+ .+|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++.++||++++|++|++.. .
T Consensus 158 ral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~-~ 236 (272)
T PRK13547 158 RVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA-H 236 (272)
T ss_pred HHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEE-e
Confidence 9999 599999999999999999999999998764 4699999999999999999999999999974 4
Q ss_pred CChhHH
Q 005532 623 GDYNYY 628 (692)
Q Consensus 623 g~~~~~ 628 (692)
|+.++.
T Consensus 237 g~~~~~ 242 (272)
T PRK13547 237 GAPADV 242 (272)
T ss_pred cCHHHH
Confidence 665544
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=359.95 Aligned_cols=204 Identities=24% Similarity=0.329 Sum_probs=176.6
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
++|+++|++++|+++.+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 5799999999999888999999999999999999999999999999999999999999999886541 35
Q ss_pred eecccchhhcCCCccHHHHHHHHhc------c-----c--cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHh
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE------D-----W--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~------~-----~--~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral 558 (692)
|++|+. .+.+..|+.+|+..... . + ....+.++++.+|+. ...++++.+|||||||||+|||||
T Consensus 84 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~ia~al 160 (510)
T PRK09700 84 IIYQEL--SVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTL 160 (510)
T ss_pred EEeecc--cccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHH
Confidence 666643 45667899999875321 0 0 123467899999995 567999999999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+.+|+||||||||+|||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++. +.|+++++..
T Consensus 161 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~~ 234 (510)
T PRK09700 161 MLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSV-CSGMVSDVSN 234 (510)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEe-eecchhhCCH
Confidence 9999999999999999999999999998765 469999999999999999999999999996 5688777643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=324.68 Aligned_cols=203 Identities=25% Similarity=0.349 Sum_probs=171.1
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~------- 489 (692)
+++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 3579999999999988899999999999999999999999999999999999875 7999999886642
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+. .+.+ .|+.+|+...... .. ...+..+++.+++.. ...++++.+|||||||||+|
T Consensus 82 ~~~~~i~~~~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 158 (251)
T PRK14270 82 ELRKRVGMVFQKP--NPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCI 158 (251)
T ss_pred HHHhheEEEecCC--CcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHH
Confidence 34666653 3444 8999998753211 11 124567888888732 34678899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||+|+.+|+||||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++..+ |+.++.
T Consensus 159 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~ 233 (251)
T PRK14270 159 ARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEF-NKTEKI 233 (251)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEe-CCHHHH
Confidence 99999999999999999999999999999999876 36999999999999999999999999999854 555544
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-38 Score=329.77 Aligned_cols=205 Identities=24% Similarity=0.351 Sum_probs=171.0
Q ss_pred CCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-----
Q 005532 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL----- 489 (692)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~----- 489 (692)
.++++|+++||++.|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 35 ~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 35 GGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred CCceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 36678999999999988889999999999999999999999999999999999864 49999999886531
Q ss_pred -------eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHH
Q 005532 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARL 552 (692)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv 552 (692)
.+|++|+. .+.+ .|+.+|+...... .. ...+..+++.+++. .+..++++.+|||||||||
T Consensus 115 ~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv 191 (286)
T PRK14275 115 EVLLRKKIGMVFQKP--NPFP-KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRL 191 (286)
T ss_pred hHHhhhcEEEECCCC--CCCc-cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHH
Confidence 34566653 3444 5999999754211 11 12456778888763 2356788999999999999
Q ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 553 ~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
+|||||+.+|+||||||||++||+.+++.+.+.|+++. .|||+||||.+++..+||++++|++|++.. .|..++.
T Consensus 192 ~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~-~g~~~~~ 268 (286)
T PRK14275 192 CVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVE-HAPTAQL 268 (286)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999999998763 499999999999999999999999999985 4665554
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=323.87 Aligned_cols=202 Identities=27% Similarity=0.405 Sum_probs=168.9
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~--------- 489 (692)
.|+++||++.|+++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999763 6999999986542
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhccc-------cHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHH
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|++|+. .+.+ .|+.+|+......+ ..+.+.++++.+++.. ...++++.+|||||||||+|||
T Consensus 83 ~~~i~~~~q~~--~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14240 83 RKRVGMVFQQP--NPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred hccEEEEecCC--ccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHH
Confidence 34566543 3444 79999987542211 1234667788887632 3457889999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++..+||++++|++|++... |+.+++.
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~-~~~~~~~ 233 (250)
T PRK14240 160 ALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEF-GDTVDLF 233 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEe-CCHHHHH
Confidence 999999999999999999999999999999876 35999999999999999999999999999854 5555543
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-38 Score=331.01 Aligned_cols=203 Identities=25% Similarity=0.387 Sum_probs=171.6
Q ss_pred ceEEEEeEEEEcCC------eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-------
Q 005532 423 SVVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~------~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~------- 489 (692)
++|+++|++++|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 47999999999973 46999999999999999999999999999999999999999999999986542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.+|++|+....+ ...++.+++...... .. ...+..+++.+|+. ...++++.+|||||||||+|||+|+
T Consensus 83 ~~~~i~~v~q~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~ 160 (280)
T PRK13633 83 IRNKAGMVFQNPDNQI-VATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILA 160 (280)
T ss_pred HhhheEEEecChhhhh-ccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHH
Confidence 245666532223 246889988754221 11 23577889999995 6788999999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.. ||++++|++|++.. .|+.+++.
T Consensus 161 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~-~g~~~~~~ 232 (280)
T PRK13633 161 MRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVM-EGTPKEIF 232 (280)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 999999999999999999999999999865 4599999999999986 99999999999974 47766654
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=329.26 Aligned_cols=202 Identities=27% Similarity=0.434 Sum_probs=171.1
Q ss_pred ceEEEEeEEEEcC--CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------e
Q 005532 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (692)
Q Consensus 423 ~~l~~~~l~~~y~--~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~ 490 (692)
++|+++|+++.|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4799999999995 467999999999999999999999999999999999999999999999886642 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+|++|+.. ...+..|+.+|+...... .. ...+.++++.+++. ...++++.+||||||||++|||||+.+|+|
T Consensus 86 ~~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 86 GIIFQNPD-NQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred EEEEeCHH-HhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 46666532 234568999998754211 11 12467889999995 568899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||||||++||+.+++.+.++|+++ +.|||+||||.+++. .||++++|++|++.. .|+.+++
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~g~~~~~ 229 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIA-QGKPKEI 229 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEE-ecCHHHH
Confidence 9999999999999999999999865 259999999999996 799999999999974 4665544
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-38 Score=321.52 Aligned_cols=200 Identities=30% Similarity=0.457 Sum_probs=171.6
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
|+++|+++.|++. +|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4689999999865 899999999999999999999999999999999999999999999986542 3456654
Q ss_pred chhhcCCCccHHHHHHHHhccc------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 497 QAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
..+.+..|+.+|+....... ....+.++++.+++. ...++++.+|||||+|||+|||||+.+|++||||||
T Consensus 80 --~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP 156 (235)
T cd03299 80 --YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGID-HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEP 156 (235)
T ss_pred --CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCC
Confidence 34556789999987543211 123467889999995 668899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|++||+.+++++.+.|+++ +.|||++|||++++..+||++++|++|++.. .|+++...
T Consensus 157 t~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 218 (235)
T cd03299 157 FSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQ-VGKPEEVF 218 (235)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 9999999999999998864 4699999999999999999999999999984 46666554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=330.17 Aligned_cols=202 Identities=21% Similarity=0.352 Sum_probs=166.3
Q ss_pred eEEEEeEEEEcC-CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc-------eeeeecc
Q 005532 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ 495 (692)
Q Consensus 424 ~l~~~~l~~~y~-~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~-------~~~~~~q 495 (692)
+|+++||++.|+ ++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++ ..+|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 589999999996 57899999999999999999999999999999999999999999999998654 2456666
Q ss_pred cchhhcCCCccHHHHHHHHhc----------cccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEE
Q 005532 496 NQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565 (692)
Q Consensus 496 ~~~~~l~~~~tv~e~~~~~~~----------~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lL 565 (692)
+.........++.+++..... ......+..+++.+|+. ...++++.+||||||||++|||||+.+|+||
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~ll 164 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVI 164 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 532111223456666542110 01123467789999995 5678999999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 566 VLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 566 lLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
||||||++||+.+++.+.+.|.++ +.|||+||||++++..+||+++.+ +|++.. .|..++.
T Consensus 165 llDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~-~g~~~~~ 228 (272)
T PRK15056 165 LLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLA-SGPTETT 228 (272)
T ss_pred EEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEe-ecCHHhc
Confidence 999999999999999999999865 459999999999999999999877 899874 4665554
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=353.79 Aligned_cols=207 Identities=26% Similarity=0.458 Sum_probs=173.3
Q ss_pred CCceEEEEeEEEEcCCe---ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------
Q 005532 421 GRSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------- 489 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~---~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-------- 489 (692)
-...|+++||+|.|+.+ ++|+|+||+|+|||+||||||||+||||+.++|.++++|++|+|.+||.+++
T Consensus 462 ~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 462 LQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred ccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 34569999999999865 5999999999999999999999999999999999999999999999998873
Q ss_pred --eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcC-------CCc---ccccccCCCCCHHHHHHHHHHHH
Q 005532 490 --PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN-------FKA---DMLDRKVSLLSGGEKARLAFCKF 557 (692)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~-------l~~---~~~~~~~~~LSgGqkqrv~LAra 557 (692)
++++.|++ . .+..|+.|||.........+++....+..+ |+. .....+..+||||||||+|||||
T Consensus 542 ~~Ig~V~QEP--v-LFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARA 618 (716)
T KOG0058|consen 542 RKIGLVGQEP--V-LFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARA 618 (716)
T ss_pred HHeeeeeccc--e-eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHH
Confidence 34555543 3 468999999998766555555554444332 221 12334556999999999999999
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHHHh
Q 005532 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 558 l~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~~~ 632 (692)
|+++|.||||||.||+||.++...++++|.+. +.|||+|.|++..+++ +|+|+++++|++++ .|++++.....
T Consensus 619 Llr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~E-~G~h~eLl~~~ 693 (716)
T KOG0058|consen 619 LLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVVE-MGTHDELLSKP 693 (716)
T ss_pred HhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEEe-cccHHHHhhCc
Confidence 99999999999999999999999999999754 4699999999999988 99999999999996 48888776644
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=328.30 Aligned_cols=207 Identities=25% Similarity=0.379 Sum_probs=170.9
Q ss_pred CCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce----
Q 005532 419 RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL---- 489 (692)
Q Consensus 419 ~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~---- 489 (692)
.|+.++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 19 ~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CCCceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 345668999999999988889999999999999999999999999999999999987 69999999886541
Q ss_pred --------eeeecccchhhcCCCccHHHHHHHHhc--c-cc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHH
Q 005532 490 --------PNYFEQNQAEALDLDKTVLETVAEAAE--D-WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKAR 551 (692)
Q Consensus 490 --------~~~~~q~~~~~l~~~~tv~e~~~~~~~--~-~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqr 551 (692)
.+|++|+. .++. .|+.+|+..... . .. ...+.++++.+++. ....++++.+||||||||
T Consensus 99 ~~~~~~~~i~~v~q~~--~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qr 175 (271)
T PRK14238 99 SVEELRTNVGMVFQKP--NPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQR 175 (271)
T ss_pred cHHHHhhhEEEEecCC--cccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHH
Confidence 34666643 3443 599999875321 1 11 12245566666431 234678899999999999
Q ss_pred HHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 552 v~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|+|||+|+.+|+||||||||++||+.++.++.++|.++ +.|||+||||++++..+||++++|++|++..+ |+.+++.
T Consensus 176 v~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~-g~~~~~~ 254 (271)
T PRK14238 176 LCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEY-DDTDKIF 254 (271)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEe-CCHHHHH
Confidence 99999999999999999999999999999999999876 36999999999999999999999999999854 6666553
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=325.84 Aligned_cols=206 Identities=24% Similarity=0.407 Sum_probs=160.4
Q ss_pred EEEEeEEEEeCC---eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEE
Q 005532 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (692)
Q Consensus 98 l~i~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~ 164 (692)
|+++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999974 469999999999999999999999999999999999999999999998732 2599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.++. .||.+|+....... . . +.+...++ .. .+.+++.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~-~-~---~~~~~~~~------------------------~~-------~~~~~~~ 123 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDA-T-D---EEVEEAAK------------------------KA-------NIHDFIM 123 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCC-C-H---HHHHHHHH------------------------Hc-------ChHHHHH
Confidence 9999987754 69999985321100 0 0 00000000 00 0112222
Q ss_pred hc--CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 005532 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~ 320 (692)
.+ |+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++.
T Consensus 124 ~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 124 SLPDGYD-TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred hhccccc-eeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 22 332 245677899999999999999999999999999999999999999999888753 5789999999999997
Q ss_pred hhcCeEEEEecceEEEeccChHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~ 343 (692)
.||+|+++++|++ .+.|...+
T Consensus 203 -~~d~v~~l~~G~i-~~~~~~~~ 223 (238)
T cd03249 203 -NADLIAVLQNGQV-VEQGTHDE 223 (238)
T ss_pred -hCCEEEEEECCEE-EEeCCHHH
Confidence 8999999999997 45565433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=321.11 Aligned_cols=201 Identities=27% Similarity=0.414 Sum_probs=172.6
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------eeeeccc
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
|+++|+++.|+++.+|+++||+|.+|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|.
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 47899999999889999999999999999999999999999999999999999999999886642 2455554
Q ss_pred chhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 497 QAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
..+++..|+.+|+...... .....+.++++.+++. ...++.+..|||||+||++|||+|+.+|++||||||
T Consensus 81 --~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP 157 (237)
T TIGR00968 81 --YALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLE-GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEP 157 (237)
T ss_pred --hhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3455678999998754321 1123567889999995 568899999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|++||+.+++.+.+.|.+. +.|||++||+++++.++||++++|++|++.. .|..+.+.
T Consensus 158 ~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~-~~~~~~~~ 219 (237)
T TIGR00968 158 FGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQ-IGSPDEVY 219 (237)
T ss_pred cccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEE-ecCHHHHH
Confidence 9999999999999999864 4699999999999999999999999999985 46555543
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-38 Score=323.10 Aligned_cols=187 Identities=28% Similarity=0.374 Sum_probs=158.7
Q ss_pred EEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc---------eeeeecccchhhcC
Q 005532 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQNQAEALD 502 (692)
Q Consensus 432 ~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~---------~~~~~~q~~~~~l~ 502 (692)
+.|+.+++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++ ..+|+.+. ...+.
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQ-KTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCC-ccccC
Confidence 567778899999999999999999999999999999999999999999999988643 12344422 23455
Q ss_pred CCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCH
Q 005532 503 LDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576 (692)
Q Consensus 503 ~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~ 576 (692)
+..|+.+++...... .. ...+..+++.+++. ...++++.+||||||||++||+||+.+|+||||||||++||+
T Consensus 108 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 108 WDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLE-ELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 678999998653221 11 23466788999995 567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 577 PSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 577 ~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
.+++.+.++|.++ +.|||+||||++++..+||++++|++|++..
T Consensus 187 ~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 187 VAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999876 3599999999999999999999999999863
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=325.73 Aligned_cols=204 Identities=24% Similarity=0.318 Sum_probs=171.7
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~------- 489 (692)
..+|+++||+++|+++++|+++||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 97 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVY 97 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChH
Confidence 347999999999998899999999999999999999999999999999999986 58999999986642
Q ss_pred -----eeeecccchhhcCCCccHHHHHHHHhccc-------cHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHH
Q 005532 490 -----PNYFEQNQAEALDLDKTVLETVAEAAEDW-------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -----~~~~~q~~~~~l~~~~tv~e~~~~~~~~~-------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|.. .+.+ .|+.+|+....... ....+.++++.+++.. ...++++.+|||||+||++|
T Consensus 98 ~~~~~i~~v~q~~--~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~l 174 (267)
T PRK14237 98 EMRKHIGMVFQRP--NPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCI 174 (267)
T ss_pred HHhcceEEEecCC--cccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHH
Confidence 34555542 3433 69999997642211 1234667788888742 34678999999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||+.+|++|||||||++||+.++..+.++|.++. .|||+||||.+++..+||++++|++|++..+ |+.+++.
T Consensus 175 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~-g~~~~~~ 250 (267)
T PRK14237 175 ARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEY-DKTRNIF 250 (267)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEe-CCHHHHh
Confidence 999999999999999999999999999999998763 5999999999999999999999999999854 6666653
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=316.83 Aligned_cols=183 Identities=34% Similarity=0.485 Sum_probs=157.2
Q ss_pred EEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------------eee
Q 005532 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNY 492 (692)
Q Consensus 427 ~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------------~~~ 492 (692)
++||++.|+++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 478999999889999999999999999999999999999999999999999999999987631 344
Q ss_pred ecccchhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
+.|. ..+++..|+.+|+...... .....+.++++.+++. ...++++.+||||||||++|||||+.+|++||
T Consensus 81 ~~q~--~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~lll 157 (206)
T TIGR03608 81 LFQN--FALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLIL 157 (206)
T ss_pred Eecc--hhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 5554 3456678999998763211 1124577899999994 56789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEE
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEV 613 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l 613 (692)
|||||++||+.+++.+.+.|+++ +.|||+||||++++ .+||++++|
T Consensus 158 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 158 ADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred EeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999875 46999999999987 479999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-38 Score=322.91 Aligned_cols=203 Identities=22% Similarity=0.339 Sum_probs=169.7
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~-------- 489 (692)
++|+++|+++.|+++++|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 369999999999888899999999999999999999999999999999999874 8999999886542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|+. .+.. .|+.+|+...... .. ...+..+++.+++.. ...++++.+||||||||++||
T Consensus 82 ~~~~i~~~~q~~--~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la 158 (250)
T PRK14262 82 YRKKVGMVFQKP--TPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIA 158 (250)
T ss_pred hhhhEEEEecCC--ccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHH
Confidence 34555543 3444 7999998754211 11 123567788888742 236789999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||+.+|+||||||||++||+.++.++.+.|.++ +.|||+||||++++..+||+|++|++|++.. .|..++..
T Consensus 159 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 233 (250)
T PRK14262 159 RALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIE-YGPTREIV 233 (250)
T ss_pred HHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEE-ecCHHHHH
Confidence 9999999999999999999999999999999876 3599999999999999999999999999985 46655543
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=320.22 Aligned_cols=200 Identities=24% Similarity=0.467 Sum_probs=163.6
Q ss_pred EEEEeEEEEcCC-eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 425 l~~~~l~~~y~~-~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
|+++|+++.|++ +.+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 3 l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 82 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVV 82 (229)
T ss_pred EEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEe
Confidence 789999999975 57999999999999999999999999999999999999999999999886542 3566
Q ss_pred cccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhc-----------CCCcccccccCCCCCHHHHHHHHHHHHhccCC
Q 005532 494 EQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRC-----------NFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 494 ~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~-----------~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p 562 (692)
+|+. .+.. .|+.+|+...........+...++.+ ++. ...++++.+|||||||||+|||+|+.+|
T Consensus 83 ~q~~--~~~~-~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 83 LQDT--FLFS-GTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYD-TVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred cCCc--hhhh-hHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccc-CHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 6653 3333 49999987643222223333333333 332 2345678999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 563 ~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
++|||||||++||+.+++.+.+.|.++. .|||+||||++++.. ||++++|++|++.. .|+++++..
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~-~~~~~~~~~ 226 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKN-ADKILVLDDGKIIE-EGTHDELLA 226 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEEeCCeEEE-eCCHHHHHh
Confidence 9999999999999999999999998763 599999999999975 99999999999984 677776644
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=319.86 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=157.0
Q ss_pred EEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..|+|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 889999999974 479999999999999999999999999999999999999999999998742 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.++ ..|+.+|+.. +.. .. .+++...++ .. .+...+..+ .
T Consensus 83 ~~q~~~l~-~~tv~enl~~-~~~-~~----~~~~~~~~~------------------------~~---~l~~~~~~l--~ 126 (221)
T cd03244 83 IPQDPVLF-SGTIRSNLDP-FGE-YS----DEELWQALE------------------------RV---GLKEFVESL--P 126 (221)
T ss_pred ECCCCccc-cchHHHHhCc-CCC-CC----HHHHHHHHH------------------------Hh---CcHHHHHhc--c
Confidence 99999864 4699999742 100 00 000000000 00 011111111 1
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~ 323 (692)
.|+.. ..++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++||+++++.. |
T Consensus 127 ~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 127 GGLDT-VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccc-ccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 24432 34567899999999999999999999999999999999999999999988864 46899999999999976 9
Q ss_pred CeEEEEecceEE
Q 005532 324 TKIVETEMGVSR 335 (692)
Q Consensus 324 d~i~~l~~G~~~ 335 (692)
|+++++++|++.
T Consensus 205 d~i~~l~~g~~~ 216 (221)
T cd03244 205 DRILVLDKGRVV 216 (221)
T ss_pred CEEEEEECCeEE
Confidence 999999999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=328.72 Aligned_cols=197 Identities=22% Similarity=0.391 Sum_probs=157.1
Q ss_pred EEEEeEEEEeC--CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
|+++|++++|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.+ ..|+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 89999999994 4679999999999999999999999999999999999998 78999998743 25999
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++ .||++|+.. +.. .. ..++.++++.
T Consensus 82 v~q~~~lf~-~tv~~nl~~-~~~-~~--------------------------------------------~~~~~~~l~~ 114 (275)
T cd03289 82 IPQKVFIFS-GTFRKNLDP-YGK-WS--------------------------------------------DEEIWKVAEE 114 (275)
T ss_pred ECCCcccch-hhHHHHhhh-ccC-CC--------------------------------------------HHHHHHHHHH
Confidence 999998864 699999841 100 00 0011112222
Q ss_pred cCCCcccccc-----------ccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEE
Q 005532 246 LGFTADDGDR-----------LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (692)
Q Consensus 246 lgl~~~~~~~-----------~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~v 312 (692)
+|+. ...++ ....|||||+||++|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+|
T Consensus 115 ~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~i 193 (275)
T cd03289 115 VGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILS 193 (275)
T ss_pred cCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 2222 11122 2456999999999999999999999999999999999999999988764 47899999
Q ss_pred ecCHHHHHhhcCeEEEEecceEEEeccChHHHH
Q 005532 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 313 sHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
||+++++.. ||+|++|++|++. +.|...+.+
T Consensus 194 sH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~ 224 (275)
T cd03289 194 EHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLL 224 (275)
T ss_pred ECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHh
Confidence 999999975 9999999999985 446554443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=322.39 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=159.9
Q ss_pred EEEEeEEEEeC-CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEE
Q 005532 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v 166 (692)
|+++|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 46899999996 4679999999999999999999999999999999999999999999998743 249999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.++ ..|+.+|+....... .. ..+...+. . ..+.+.+..+
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~-~~----~~~~~~~~------------------------~-------~~l~~~~~~l 123 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDA-TD----EEVIEAAK------------------------A-------AQIHDKIMRF 123 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCC-CH----HHHHHHHH------------------------H-------cCcHHHHHhc
Confidence 9998875 579999985321100 00 00000000 0 0011222222
Q ss_pred --CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 005532 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~ 322 (692)
|+. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+.++|.+ .+.|||+|||+.+++..
T Consensus 124 ~~~~~-~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 201 (236)
T cd03253 124 PDGYD-TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN- 201 (236)
T ss_pred ccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-
Confidence 333 234666899999999999999999999999999999999999999999887743 27899999999999975
Q ss_pred cCeEEEEecceEEEeccChHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~ 343 (692)
||+++++++|++. +.|...+
T Consensus 202 ~d~~~~l~~g~i~-~~~~~~~ 221 (236)
T cd03253 202 ADKIIVLKDGRIV-ERGTHEE 221 (236)
T ss_pred CCEEEEEECCEEE-eeCCHHH
Confidence 9999999999974 5565443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-38 Score=308.99 Aligned_cols=162 Identities=33% Similarity=0.478 Sum_probs=144.4
Q ss_pred EEEEeEEEEeCCe--eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---------ceEEEE
Q 005532 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~---------~~i~~v 166 (692)
|+++|++++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4689999999775 79999999999999999999999999999999999999999999998742 358999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhc
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|++.++ ..|+++|+
T Consensus 81 ~q~~~~~-~~tv~~~i---------------------------------------------------------------- 95 (178)
T cd03247 81 NQRPYLF-DTTLRNNL---------------------------------------------------------------- 95 (178)
T ss_pred ccCCeee-cccHHHhh----------------------------------------------------------------
Confidence 9998764 35665542
Q ss_pred CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcC
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~d 324 (692)
+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++||+++++. .||
T Consensus 96 ----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCC
Confidence 467999999999999999999999999999999999999999887753 4789999999999996 699
Q ss_pred eEEEEecceEE
Q 005532 325 KIVETEMGVSR 335 (692)
Q Consensus 325 ~i~~l~~G~~~ 335 (692)
+++++++|++.
T Consensus 165 ~~~~l~~g~i~ 175 (178)
T cd03247 165 KILFLENGKII 175 (178)
T ss_pred EEEEEECCEEE
Confidence 99999999874
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=358.78 Aligned_cols=206 Identities=26% Similarity=0.417 Sum_probs=176.3
Q ss_pred CCceEEEEeEEEEcCCe--ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce---------
Q 005532 421 GRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~--~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------- 489 (692)
-..-++++||+|+|+.. ++|+|+||+|++||+|||||+||||||||+|+|.|+++|++|+|.+||.++.
T Consensus 468 ~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~ 547 (709)
T COG2274 468 LQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547 (709)
T ss_pred cCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHh
Confidence 34459999999999754 6999999999999999999999999999999999999999999999998763
Q ss_pred -eeeecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcc----------cccccCCCCCHHHHHHHHHHHHh
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFM 558 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~LAral 558 (692)
.+|+.|+. ..++.|+.||+.......+.+++.+.+...|..+. ........||||||||++|||||
T Consensus 548 ~ig~V~Q~~---~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaL 624 (709)
T COG2274 548 QVGYVLQDP---FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARAL 624 (709)
T ss_pred heeEEcccc---hhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHh
Confidence 46777653 44688999999988776666666666665554321 12334568999999999999999
Q ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHHH
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631 (692)
Q Consensus 559 ~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~~ 631 (692)
+++|+|||||||||+||+++.+.+.+.|.++. .|+|+|||++..+.. ||||++|++|++++ .|+.++.+..
T Consensus 625 l~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~-adrIiVl~~Gkiv~-~gs~~ell~~ 697 (709)
T COG2274 625 LSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS-ADRIIVLDQGKIVE-QGSHEELLAQ 697 (709)
T ss_pred ccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh-ccEEEEccCCceec-cCCHHHHHHh
Confidence 99999999999999999999999999999885 699999999999987 99999999999985 5887777653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=359.71 Aligned_cols=211 Identities=22% Similarity=0.397 Sum_probs=173.3
Q ss_pred CCcEEEEeEEEEeC-----------CeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC---
Q 005532 95 SSGVKLENISKSYK-----------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (692)
Q Consensus 95 ~~~l~i~~ls~~y~-----------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--- 160 (692)
.++|+++|++++|+ ++++|+++||+|++|++++|+||||||||||+++|+|+++ ++|+|.++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccc
Confidence 34699999999995 3579999999999999999999999999999999999995 89999998731
Q ss_pred ----------ceEEEEcccCc--cCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHh
Q 005532 161 ----------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (692)
Q Consensus 161 ----------~~i~~v~Q~~~--~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (692)
..|+|++|++. +++..||.+|+...+.. .. .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~---------------~~----------------------~ 394 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV---------------HQ----------------------P 394 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh---------------cc----------------------c
Confidence 25999999973 66678999998532100 00 0
Q ss_pred hcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----
Q 005532 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (692)
Q Consensus 229 ~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---- 304 (692)
..+......++.++++.+|+.+...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 0011112345678889999964457899999999999999999999999999999999999999999999888752
Q ss_pred CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHH
Q 005532 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 305 ~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~ 344 (692)
.++|||+||||++++..+||+|+++++|++. ..|...++
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 513 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDCERV 513 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCHHHH
Confidence 4899999999999999999999999999974 55665433
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=310.61 Aligned_cols=174 Identities=34% Similarity=0.576 Sum_probs=147.9
Q ss_pred EEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccceeeeecccchhhcCCCc
Q 005532 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505 (692)
Q Consensus 426 ~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~ 505 (692)
+++|+++.|+++.+|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. ..
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~--~~--~~------- 69 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLAS--LS--PK------- 69 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCc--CC--HH-------
Confidence 47899999988889999999999999999999999999999999999999999999998865421 00 00
Q ss_pred cHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHH
Q 005532 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585 (692)
Q Consensus 506 tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~ 585 (692)
.....+. .+..+++.+++. +..++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.
T Consensus 70 ~~~~~i~---------~~~q~l~~~gl~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~ 139 (180)
T cd03214 70 ELARKIA---------YVPQALELLGLA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLEL 139 (180)
T ss_pred HHHHHHh---------HHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 0001111 011178888885 567888999999999999999999999999999999999999999999999
Q ss_pred HHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 586 ISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 586 l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
|.++ +.|+|+||||++++.++||++++|++|++..
T Consensus 140 l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 140 LRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9865 4599999999999999999999999999863
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-38 Score=371.62 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=167.9
Q ss_pred CcEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 96 ~~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
..|+++|++|+|++ +++|+|+||+|++|++++|||+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 476 ~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 476 GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred CeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 45999999999975 579999999999999999999999999999999999999999999999753 369
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+||+|++++ ++.|++|||...-.+ .. .+++.++++.+. +.+.+.++
T Consensus 556 ~~v~Q~~~l-f~gTi~eNi~l~~~~-~~----~~~i~~al~~~~---------------------------l~~~i~~l- 601 (710)
T TIGR03796 556 AMVDQDIFL-FEGTVRDNLTLWDPT-IP----DADLVRACKDAA---------------------------IHDVITSR- 601 (710)
T ss_pred eEEecCChh-hhccHHHHhhCCCCC-CC----HHHHHHHHHHhC---------------------------CHHHHHhC-
Confidence 999999987 578999999632110 00 011111221110 11111111
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~ 323 (692)
..|+.+... ....+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. |
T Consensus 602 -p~gl~t~i~-e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~-~ 678 (710)
T TIGR03796 602 -PGGYDAELA-EGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD-C 678 (710)
T ss_pred -cCcccceec-cCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-C
Confidence 114443333 3368899999999999999999999999999999999999999999988889999999999999975 9
Q ss_pred CeEEEEecceEEEeccChHHHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
|+|+++++|++. ..|++++.+
T Consensus 679 D~Iivl~~G~i~-~~G~~~~Ll 699 (710)
T TIGR03796 679 DEIIVLERGKVV-QRGTHEELW 699 (710)
T ss_pred CEEEEEeCCEEE-EecCHHHHH
Confidence 999999999984 568776543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=356.69 Aligned_cols=201 Identities=24% Similarity=0.354 Sum_probs=173.3
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
++|+++|++++|+++.+|+++||+|.+|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 4799999999999888999999999999999999999999999999999999999999999886541 35
Q ss_pred eecccchhhcCCCccHHHHHHHHhc------c--cc--HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccC
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE------D--WR--IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~------~--~~--~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~ 561 (692)
|++|+. .+.+..|+.+|+..... . +. ...+.++++.+|+. +..++++.+|||||||||+|||||+.+
T Consensus 83 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~ 159 (501)
T PRK10762 83 IIHQEL--NLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFE 159 (501)
T ss_pred EEEcch--hccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCC-CCccCchhhCCHHHHHHHHHHHHHhcC
Confidence 666653 46678899999875321 0 11 13467889999995 567899999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNY 627 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~ 627 (692)
|+||||||||++||+.++.++.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|..++
T Consensus 160 p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~-~~~~~~ 227 (501)
T PRK10762 160 SKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIA-EREVAD 227 (501)
T ss_pred CCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEE-ecCcCc
Confidence 9999999999999999999999888764 4599999999999999999999999999974 354443
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=367.94 Aligned_cols=245 Identities=24% Similarity=0.403 Sum_probs=188.1
Q ss_pred HHHHhHHHHHHhhhccCccccccccccccCCCCCCCCCCCcEEEEeEEEEeCCee---ceeeeeEEEECCcEEEEEcCCC
Q 005532 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT---VLKDVTWEVKKGEKVGLVGVNG 133 (692)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~ls~~y~~~~---vL~~vsl~i~~Ge~~~lvG~NG 133 (692)
..+.++..+..++|...++.+.....++ .+.......+.|+++||+|+||.+| ||+|+||+|++|+.+|||||+|
T Consensus 949 Pd~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SG 1026 (1228)
T KOG0055|consen 949 PDISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSG 1026 (1228)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCC
Confidence 3466777777778877665543333321 1111123455699999999998765 9999999999999999999999
Q ss_pred ccHHHHHHHHHCCCCCCccEEEECCCCc----------eEEEEcccCccCCCCCHHHHHHhhhHH----HHHHHHHHHHH
Q 005532 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EMEIAGKLERV 199 (692)
Q Consensus 134 sGKSTLl~~L~G~~~p~~G~I~~~~~~~----------~i~~v~Q~~~~~~~~Tv~e~i~~~~~~----~~~~~~~~~~~ 199 (692)
|||||.+.+|-.+|+|++|.|.++|.+. +||.|+|+|.+ ++.||+|||..+... ++..+.++.++
T Consensus 1027 sGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANa 1105 (1228)
T KOG0055|consen 1027 SGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEIIEAAKLANA 1105 (1228)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHHHHHHHhhh
Confidence 9999999999999999999999998653 59999999987 889999999865211 11111111111
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCC
Q 005532 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (692)
Q Consensus 200 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~ 279 (692)
...+.+.+ -|.++..+++ ..+||||||||+|||||+++||+
T Consensus 1106 H~FI~sLP--------------------------------------~GyDT~vGer-G~QLSGGQKQRIAIARAilRnPk 1146 (1228)
T KOG0055|consen 1106 HNFISSLP--------------------------------------QGYDTRVGER-GVQLSGGQKQRIAIARAILRNPK 1146 (1228)
T ss_pred HHHHhcCc--------------------------------------CcccCccCcc-cCcCCchHHHHHHHHHHHHcCCC
Confidence 11111111 1444444444 78999999999999999999999
Q ss_pred eEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhcCeEEEEecceEEEeccChHHHH
Q 005532 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 280 lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
||||||.||+||.++.+.+++.|.+ .|.|.|+|+|++..+.+ ||.|+++++|++ .-.|+.++.+
T Consensus 1147 ILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqn-aD~I~Vi~~G~V-vE~GtH~~L~ 1212 (1228)
T KOG0055|consen 1147 ILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQN-ADVIAVLKNGKV-VEQGTHDELL 1212 (1228)
T ss_pred eeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhc-CCEEEEEECCEE-EecccHHHHH
Confidence 9999999999999999999999964 68999999999999975 999999999998 4567765543
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=322.70 Aligned_cols=201 Identities=28% Similarity=0.396 Sum_probs=166.7
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcC--CCCCeeEEEECCccce-----------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNVL----------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~--~~p~~G~i~~~~~~~~----------- 489 (692)
++|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++.
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 469999999999988899999999999999999999999999999999998 5799999999886542
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhc---------ccc----HHHHHHHHhhcCCCcccccccCC-CCCHHHHHHHHHH
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAE---------DWR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFC 555 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~---------~~~----~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~LA 555 (692)
.+++.|. ..+.+..++.+++..... ... ...+.++|+.+++.....++++. .|||||||||+||
T Consensus 86 ~~~~~q~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la 163 (252)
T CHL00131 86 IFLAFQY--PIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEIL 163 (252)
T ss_pred EEEEecc--ccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHH
Confidence 1233343 334556788888754311 011 13467789999996445677887 5999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEECCEEEEecCChh
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~-~d~i~~l~~g~l~~~~g~~~ 626 (692)
|||+.+|+||||||||++||+.+++.+.+.|+++ +.|||+||||++++..+ ||++++|++|+++. .|+.+
T Consensus 164 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~-~~~~~ 237 (252)
T CHL00131 164 QMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIK-TGDAE 237 (252)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEE-ecChh
Confidence 9999999999999999999999999999999865 46999999999999887 89999999999974 45544
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=338.05 Aligned_cols=195 Identities=28% Similarity=0.369 Sum_probs=167.1
Q ss_pred eEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce--------------eeeec
Q 005532 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------------PNYFE 494 (692)
Q Consensus 429 ~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~--------------~~~~~ 494 (692)
||+++|++..+ ++||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.++. .+|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987664 999999999999999999999999999999999999999999886541 24555
Q ss_pred ccchhhcCCCccHHHHHHHHhccc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCC
Q 005532 495 QNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 495 q~~~~~l~~~~tv~e~~~~~~~~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEP 570 (692)
|+ ..+++..|+.+|+....... ....+.++++.+++. ...++++.+|||||||||+|||||+.+|++||||||
T Consensus 82 q~--~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 82 QE--ARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred cC--CccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 54 35667889999997643211 123478899999995 678999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 571 TNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 571 Tn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|++||+.+++.+.+.|+++ +.|||+||||++++..+||+|++|++|++.. .|..++..
T Consensus 159 ts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 220 (354)
T TIGR02142 159 LAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAA-AGPIAEVW 220 (354)
T ss_pred CcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEE-ECCHHHHh
Confidence 9999999999999988764 4699999999999999999999999999974 46655543
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=316.22 Aligned_cols=191 Identities=30% Similarity=0.445 Sum_probs=164.2
Q ss_pred eEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+|+++|+++.|++ +.+|+++||++++|+++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (220)
T TIGR02982 1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQL 80 (220)
T ss_pred CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHH
Confidence 3789999999975 67999999999999999999999999999999999999999999999887542
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhc---ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~---~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.+|++|++ .+.+..|+.+|+..... ... ...+.++++.+|+. ...++++.+||||||||++|||+|+
T Consensus 81 ~~~i~~~~q~~--~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~ 157 (220)
T TIGR02982 81 RRNIGYIFQAH--NLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALV 157 (220)
T ss_pred HhheEEEcCCh--hhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHh
Confidence 34556543 45567899999875432 111 23578899999994 6678899999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
.+|++|||||||++||+.++..+.+.|+++ +.|||+||||++++ ++||+|++|++|++
T Consensus 158 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRIL-DVADRIVHMEDGKL 219 (220)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH-hhCCEEEEEECCEE
Confidence 999999999999999999999999988754 46999999999965 68999999999875
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=327.60 Aligned_cols=205 Identities=29% Similarity=0.412 Sum_probs=173.0
Q ss_pred CceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCe---eEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~---G~i~~~~~~~~------- 489 (692)
+.+|+++|+++.|++ +++|+++||+|++||++||+|+||||||||+++|+|+++|++ |+|.++|.++.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~ 82 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDI 82 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHH
Confidence 357999999999974 469999999999999999999999999999999999999987 89999987652
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhcc
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~ 560 (692)
.+|++|+.. ...+..|+.+|+...... .. .+.+.++++.+++. +..++++.+|||||+|||+|||||+.
T Consensus 83 ~~~ig~v~q~~~-~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~ 160 (282)
T PRK13640 83 REKVGIVFQNPD-NQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAV 160 (282)
T ss_pred HhheEEEEECHH-HhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHc
Confidence 356666532 234578999999753221 11 13477889999995 57899999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 561 ~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++. .||++++|++|++.. .|+.+++..
T Consensus 161 ~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 232 (282)
T PRK13640 161 EPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLA-QGSPVEIFS 232 (282)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEE-eCCHHHHhc
Confidence 99999999999999999999999999764 459999999999995 799999999999985 466665543
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-37 Score=325.22 Aligned_cols=204 Identities=23% Similarity=0.363 Sum_probs=171.1
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce-------
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~------- 489 (692)
.++|+++||+++|+++++|+++||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4579999999999988999999999999999999999999999999999999985 7999999886541
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc---ccH----HHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WRI----DDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|.. .+++ .|+.+|+...... ... ..+.++++.+++.. +..++.+.+|||||||||+||
T Consensus 99 ~~~~i~~v~q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LA 175 (276)
T PRK14271 99 FRRRVGMLFQRP--NPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLA 175 (276)
T ss_pred HhhheEEeccCC--ccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHH
Confidence 34666543 3444 7999998754211 111 13456788888853 235778999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|+|+.+|+||||||||++||+.+++.+.+.|+++ ..|||+||||++++..+||++++|++|++.. .|..+++.
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~-~g~~~~~~ 250 (276)
T PRK14271 176 RTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVE-EGPTEQLF 250 (276)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE-eCCHHHHH
Confidence 9999999999999999999999999999999876 4699999999999999999999999999985 46666554
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=321.04 Aligned_cols=204 Identities=24% Similarity=0.336 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCC--------------------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEEC
Q 005532 98 VKLENISKSYKG--------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (692)
Q Consensus 98 l~i~~ls~~y~~--------------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~ 157 (692)
|+++|+++.|.. .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~ 84 (264)
T PRK13546 5 VNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRN 84 (264)
T ss_pred EEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEC
Confidence 777777777732 248999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHH
Q 005532 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (692)
Q Consensus 158 ~~~~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (692)
| .+++++|.+.+....|+.+|+..... ... .+......
T Consensus 85 g---~~~~~~~~~~~~~~~tv~enl~~~~~---------------~~~------------------------~~~~~~~~ 122 (264)
T PRK13546 85 G---EVSVIAISAGLSGQLTGIENIEFKML---------------CMG------------------------FKRKEIKA 122 (264)
T ss_pred C---EEeEEecccCCCCCCcHHHHHHHHHH---------------HcC------------------------CCHHHHHH
Confidence 5 46788888877677899999742110 000 00011122
Q ss_pred HHHHHhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEec
Q 005532 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (692)
Q Consensus 238 ~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsH 314 (692)
.+..+++.+++. +..++++.+|||||+|||+|||||+.+|+||||||||+|||+.+++.+.+.|. +.++|||+|||
T Consensus 123 ~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 123 MTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 344556666775 46788899999999999999999999999999999999999999988887764 35899999999
Q ss_pred CHHHHHhhcCeEEEEecceEEEeccChHHHH
Q 005532 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 315 d~~~l~~~~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
+++++..+||+|+++++|++. +.|.++++.
T Consensus 202 ~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~ 231 (264)
T PRK13546 202 NLGQVRQFCTKIAWIEGGKLK-DYGELDDVL 231 (264)
T ss_pred CHHHHHHHcCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999984 557665543
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=341.80 Aligned_cols=206 Identities=22% Similarity=0.292 Sum_probs=167.2
Q ss_pred CcEEEEeEEEEeCC---eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCcc
Q 005532 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (692)
Q Consensus 96 ~~l~i~~ls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~ 172 (692)
++++++|++|.|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|... ++.+.+.+
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~~~~~l 96 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIAISSGL 96 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEEecccc
Confidence 46999999999977 3699999999999999999999999999999999999999999999987543 33334445
Q ss_pred CCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccc
Q 005532 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (692)
Q Consensus 173 ~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~ 252 (692)
.+..|+++|+..... +. ..+.....+++.++++.+|+. +.
T Consensus 97 ~~~lTV~EnL~l~~~---------------~~------------------------~~~~~e~~e~i~elLe~lgL~-~~ 136 (549)
T PRK13545 97 NGQLTGIENIELKGL---------------MM------------------------GLTKEKIKEIIPEIIEFADIG-KF 136 (549)
T ss_pred CCCCcHHHHHHhhhh---------------hc------------------------CCCHHHHHHHHHHHHHHcCCh-hH
Confidence 566799999742100 00 001111233455677888885 56
Q ss_pred cccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhhcCeEEEE
Q 005532 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET 329 (692)
Q Consensus 253 ~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~~d~i~~l 329 (692)
.++++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.+.|+ +.++|||+||||++++..+||+|+++
T Consensus 137 ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL 216 (549)
T PRK13545 137 IYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWL 216 (549)
T ss_pred hhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEE
Confidence 788999999999999999999999999999999999999999999888774 45889999999999999999999999
Q ss_pred ecceEEEeccChHHHH
Q 005532 330 EMGVSRTYEGNYSQYV 345 (692)
Q Consensus 330 ~~G~~~~~~G~y~~~~ 345 (692)
++|++. +.|..++..
T Consensus 217 ~~GkIv-~~G~~~el~ 231 (549)
T PRK13545 217 HYGQVK-EYGDIKEVV 231 (549)
T ss_pred ECCEEE-EECCHHHHH
Confidence 999984 456554443
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=369.09 Aligned_cols=211 Identities=24% Similarity=0.424 Sum_probs=167.8
Q ss_pred CcEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 96 ~~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
..|+++||+|+|++ +++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 450 ~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 450 GAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred ceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 35999999999953 579999999999999999999999999999999999999999999999854 259
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+||+|++.+ ++.|++|||..+-. .. .+++.++++.+ .+.+.+..+
T Consensus 530 ~~v~Q~~~l-f~gTI~eNi~~~~~--~~----~e~i~~al~~a---------------------------~l~~~i~~l- 574 (686)
T TIGR03797 530 GVVLQNGRL-MSGSIFENIAGGAP--LT----LDEAWEAARMA---------------------------GLAEDIRAM- 574 (686)
T ss_pred EEEccCCcc-CcccHHHHHhcCCC--CC----HHHHHHHHHHc---------------------------CcHHHHHhc-
Confidence 999999987 67899999964311 00 01112222211 111112111
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHccCCCeEEEEecCHHHHHhhc
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~~~~tvI~vsHd~~~l~~~~ 323 (692)
..|+.+..+ ....+||||||||++|||||+++|+|||||||||+||+.+.+.+.+.|++.++|+|+|||+++.+.. |
T Consensus 575 -p~G~dt~ig-e~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~ 651 (686)
T TIGR03797 575 -PMGMHTVIS-EGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-A 651 (686)
T ss_pred -ccccccccc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-C
Confidence 114433332 2367899999999999999999999999999999999999999999998878999999999999975 9
Q ss_pred CeEEEEecceEEEeccChHHHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
|+|+++++|++. ..|++++.+
T Consensus 652 D~Iivl~~G~iv-~~G~~~~Ll 672 (686)
T TIGR03797 652 DRIYVLDAGRVV-QQGTYDELM 672 (686)
T ss_pred CEEEEEECCEEE-EECCHHHHH
Confidence 999999999984 678876543
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=325.90 Aligned_cols=204 Identities=25% Similarity=0.404 Sum_probs=171.3
Q ss_pred CceEEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
.++|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 346999999999975 45999999999999999999999999999999999999999999999987642
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhcc--cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
.+|++|+.. .+.+..++.+|+...... .. ...+.++++.+++. +..++++.+|||||||||+|||||+.+|+
T Consensus 85 i~~v~q~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~ 162 (269)
T PRK13648 85 IGIVFQNPD-NQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPS 162 (269)
T ss_pred eeEEEeChH-HhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 346666532 234567888887653211 11 23467889999995 56788999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||||||++||+.+++.+.+.|+++ +.|||+||||.+++.. ||+|++|++|++.. .|..+++.
T Consensus 163 lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~-~g~~~~~~ 230 (269)
T PRK13648 163 VIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYK-EGTPTEIF 230 (269)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEE-ecCHHHHh
Confidence 99999999999999999999999864 4599999999999986 99999999999985 46665543
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=322.15 Aligned_cols=207 Identities=19% Similarity=0.239 Sum_probs=167.2
Q ss_pred CcEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC-----CccEEEECCCC----------
Q 005532 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p-----~~G~I~~~~~~---------- 160 (692)
..+.++++++.|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 7 ~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 7 IVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred ceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 459999999999988999999999999999999999999999999999999986 79999998742
Q ss_pred --ceEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHH
Q 005532 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 161 --~~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
..|+|++|++.++ ..|+.||+...... .. .. .....+
T Consensus 87 ~~~~i~~v~q~~~~~-~~tv~enl~~~~~~---------------~~------------------------~~-~~~~~~ 125 (261)
T PRK14263 87 VRRYIGMVFQQPNPF-SMSIFDNVAFGLRL---------------NR------------------------YK-GDLGDR 125 (261)
T ss_pred hhhceEEEecCCccc-cccHHHHHHHHHhh---------------cC------------------------ch-HHHHHH
Confidence 2499999998875 68999998532100 00 00 001223
Q ss_pred HHHHhhhcCCCcc---ccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEe
Q 005532 239 VSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (692)
Q Consensus 239 i~~ll~~lgl~~~---~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vs 313 (692)
+.++++.+|+... ..++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||++|
T Consensus 126 ~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~is 205 (261)
T PRK14263 126 VKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVT 205 (261)
T ss_pred HHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4455666665321 23567889999999999999999999999999999999999999999988754 368999999
Q ss_pred cCHHHHHhhcCeEEEEe--------cceEEEeccChHHH
Q 005532 314 HDRAFLDQLCTKIVETE--------MGVSRTYEGNYSQY 344 (692)
Q Consensus 314 Hd~~~l~~~~d~i~~l~--------~G~~~~~~G~y~~~ 344 (692)
|+++++..+||+|++++ +|++. ..|...++
T Consensus 206 H~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~~~~ 243 (261)
T PRK14263 206 HNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPTAQI 243 (261)
T ss_pred CCHHHHHHhCCEEEEEecccccccCCceEE-EeCCHHHH
Confidence 99999999999999996 78874 45664443
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=306.77 Aligned_cols=157 Identities=30% Similarity=0.542 Sum_probs=139.7
Q ss_pred EEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEE
Q 005532 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 98 l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~ 165 (692)
|+++|++++|++ .++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 468999999976 469999999999999999999999999999999999999999999998732 35899
Q ss_pred EcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
++|++.+++ .|+++|
T Consensus 81 ~~q~~~~~~-~tv~~~---------------------------------------------------------------- 95 (173)
T cd03246 81 LPQDDELFS-GSIAEN---------------------------------------------------------------- 95 (173)
T ss_pred ECCCCcccc-CcHHHH----------------------------------------------------------------
Confidence 999986644 365543
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHc---cCCCeEEEEecCHHHHHhh
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~---~~~~tvI~vsHd~~~l~~~ 322 (692)
+ |||||+||++|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||||++++. .
T Consensus 96 -----------l--LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~ 161 (173)
T cd03246 96 -----------I--LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S 161 (173)
T ss_pred -----------C--cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h
Confidence 0 89999999999999999999999999999999999999988774 35789999999999985 7
Q ss_pred cCeEEEEecce
Q 005532 323 CTKIVETEMGV 333 (692)
Q Consensus 323 ~d~i~~l~~G~ 333 (692)
||+|+++++|+
T Consensus 162 ~d~v~~l~~G~ 172 (173)
T cd03246 162 ADRILVLEDGR 172 (173)
T ss_pred CCEEEEEECCC
Confidence 99999999886
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=324.84 Aligned_cols=206 Identities=25% Similarity=0.346 Sum_probs=170.2
Q ss_pred CCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce-----
Q 005532 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL----- 489 (692)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~----- 489 (692)
+..++|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 16 ~~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~ 95 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQIN 95 (274)
T ss_pred CCCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccch
Confidence 345589999999999988899999999999999999999999999999999999863 6999999886541
Q ss_pred -------eeeecccchhhcCCCccHHHHHHHHhcc--c---cHHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHH
Q 005532 490 -------PNYFEQNQAEALDLDKTVLETVAEAAED--W---RIDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAF 554 (692)
Q Consensus 490 -------~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~---~~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~L 554 (692)
.+|++|+. .+.. .|+.+|+...... . ....+...++.+++. .+..++++.+|||||||||+|
T Consensus 96 ~~~~~~~i~~v~q~~--~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~L 172 (274)
T PRK14265 96 SVKLRRQVGMVFQRP--NPFP-KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCI 172 (274)
T ss_pred hHHHhhcEEEEccCC--cccc-ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHH
Confidence 34666653 3333 4999998754211 1 122355667777763 234678899999999999999
Q ss_pred HHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEE---------CCEEEEecC
Q 005532 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK---------GSNLQDYAG 623 (692)
Q Consensus 555 Aral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~---------~g~l~~~~g 623 (692)
||||+.+|+||||||||++||+.+++.+.++|.++ +.|||+||||.+++.++||++++|+ +|+++. .|
T Consensus 173 AraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~-~g 251 (274)
T PRK14265 173 ARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE-FS 251 (274)
T ss_pred HHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE-eC
Confidence 99999999999999999999999999999999876 3599999999999999999999998 799875 47
Q ss_pred ChhHHH
Q 005532 624 DYNYYL 629 (692)
Q Consensus 624 ~~~~~~ 629 (692)
.-+++.
T Consensus 252 ~~~~~~ 257 (274)
T PRK14265 252 PTEQMF 257 (274)
T ss_pred CHHHHH
Confidence 666654
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=343.27 Aligned_cols=207 Identities=29% Similarity=0.433 Sum_probs=161.7
Q ss_pred EEEEeEEEEeCCe-eceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEEEE
Q 005532 98 VKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (692)
Q Consensus 98 l~i~~ls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~~v 166 (692)
++++|+++.|++. ++++|+||++++|++++|||+||||||||+++|+|+.+|++|+|.++|.+ .+++||
T Consensus 321 i~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v 400 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWV 400 (559)
T ss_pred eeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeee
Confidence 5556999999765 89999999999999999999999999999999999999999999999753 259999
Q ss_pred cccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhh-
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE- 245 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~- 245 (692)
+|+|.+ +..|++||+..+-... . -+.+.++++.. -+.+.++.
T Consensus 401 ~Q~p~l-f~gTireNi~l~~~~~-s----~e~i~~al~~a-------------------------------~l~~~v~~p 443 (559)
T COG4988 401 SQNPYL-FAGTIRENILLARPDA-S----DEEIIAALDQA-------------------------------GLLEFVPKP 443 (559)
T ss_pred CCCCcc-ccccHHHHhhccCCcC-C----HHHHHHHHHHh-------------------------------cHHHhhcCC
Confidence 999987 6789999996432110 0 01111111110 01111111
Q ss_pred cCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhhc
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~~ 323 (692)
-|+++..+ .....|||||+|||+|||||+.+++++||||||+|||+++.+.+.+.|.+ .++|||+|||+++.+.+ |
T Consensus 444 ~GLdt~ig-e~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~ 521 (559)
T COG4988 444 DGLDTVIG-EGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-A 521 (559)
T ss_pred Ccccchhc-cCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-C
Confidence 24433222 22577999999999999999999999999999999999999999887753 57999999999999976 9
Q ss_pred CeEEEEecceEEEeccChHHH
Q 005532 324 TKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 324 d~i~~l~~G~~~~~~G~y~~~ 344 (692)
|+|+++++|++ .-.|++++.
T Consensus 522 D~I~vld~G~l-~~~g~~~~L 541 (559)
T COG4988 522 DRIVVLDNGRL-VEQGTHEEL 541 (559)
T ss_pred CEEEEecCCce-eccCCHHHH
Confidence 99999999998 456776554
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=337.92 Aligned_cols=201 Identities=24% Similarity=0.460 Sum_probs=177.3
Q ss_pred eEEEEeEEEEcCCee-cccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eee
Q 005532 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~-~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
.|+++||++.|+++. +|+++||+|++||+|||||+|||||||+||+|.++.+ .+|+|.+||.++. +++
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~ 429 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGV 429 (591)
T ss_pred cEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeE
Confidence 499999999999765 9999999999999999999999999999999999999 8999999998863 567
Q ss_pred ecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcc----------cccccCCCCCHHHHHHHHHHHHhccCC
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~----------~~~~~~~~LSgGqkqrv~LAral~~~p 562 (692)
++|+. ..++.|+..|+.........+++.+.++++++.+. ....+...|||||||||+||||++++|
T Consensus 430 VPQd~---~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda 506 (591)
T KOG0057|consen 430 VPQDS---VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDA 506 (591)
T ss_pred eCCcc---cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCC
Confidence 88753 34689999999988777777888888888887421 123345579999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 563 ~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
+|+++|||||+||.++.+.|.+.+... ++|+|+|.||++++.+ ||+|+++++|++.++ |+.++.+.
T Consensus 507 ~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 507 PILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred CeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 999999999999999999999999863 4599999999999988 999999999999976 88887776
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=313.73 Aligned_cols=184 Identities=25% Similarity=0.384 Sum_probs=154.4
Q ss_pred CcEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceE
Q 005532 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (692)
Q Consensus 96 ~~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i 163 (692)
..|+++|++++|++ .++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.. ..|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 35999999999975 479999999999999999999999999999999999999999999998742 359
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.++. .|+++|+... .. . . ...+.+.+
T Consensus 85 ~~v~q~~~~~~-~tv~~~l~~~-~~-----------------~--~--------------------------~~~~~~~l 117 (207)
T cd03369 85 TIIPQDPTLFS-GTIRSNLDPF-DE-----------------Y--S--------------------------DEEIYGAL 117 (207)
T ss_pred EEEecCCcccC-ccHHHHhccc-CC-----------------C--C--------------------------HHHHHHHh
Confidence 99999997754 6999997411 00 0 0 00111112
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHh
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~ 321 (692)
+ .++++.+|||||+|||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|++||+.+++..
T Consensus 118 ~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 118 R--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred h--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 1 2456899999999999999999999999999999999999999999888764 37899999999999976
Q ss_pred hcCeEEEEecceEE
Q 005532 322 LCTKIVETEMGVSR 335 (692)
Q Consensus 322 ~~d~i~~l~~G~~~ 335 (692)
||+++++++|++.
T Consensus 190 -~d~v~~l~~g~i~ 202 (207)
T cd03369 190 -YDKILVMDAGEVK 202 (207)
T ss_pred -CCEEEEEECCEEE
Confidence 9999999999874
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=320.98 Aligned_cols=202 Identities=25% Similarity=0.368 Sum_probs=168.4
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----eeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~-----~G~i~~~~~~~~-------- 489 (692)
++|+++|+++.|+++.+|+++||+|.+|+++||+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999999888999999999999999999999999999999999999997 699999886542
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc---cc----HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED---WR----IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~---~~----~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|+. .+.+ .|+.+|+...... .. ...+..++..+++. ....++++.+|||||||||+||
T Consensus 83 ~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~la 159 (251)
T PRK14249 83 LRKRVGMVFQQP--NPFP-KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIA 159 (251)
T ss_pred hhceEEEEecCC--ccCc-CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 34666653 3444 5999998754211 11 12355567777763 1346789999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|||+.+|++|||||||++||+.++.++.++|+++ +.|||+||||++++..+||++++|++|++..+ |..++.
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~-~~~~~~ 233 (251)
T PRK14249 160 RVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEY-GRTGEI 233 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEe-CCHHHH
Confidence 9999999999999999999999999999999876 36999999999999999999999999999854 555444
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-39 Score=305.54 Aligned_cols=204 Identities=25% Similarity=0.415 Sum_probs=180.3
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
+.+.++|+.++|+.+.++++|||+|++||+|||.||||+||||.+.++.|+.+|++|+|.+++.++. .+
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 4689999999999999999999999999999999999999999999999999999999999998874 36
Q ss_pred eecccchhhcCCCccHHHHHHHHhccc--------cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCc
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAEDW--------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~~--------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~ 563 (692)
|++|.. ..+-.+||.+|+....+.. ...++.++|+.|++ .+..+++..+||||||+|+-|||||+.+|+
T Consensus 83 YLpQE~--SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i-~hlr~~~a~sLSGGERRR~EIARaLa~~P~ 159 (243)
T COG1137 83 YLPQEA--SIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHI-THLRDSKAYSLSGGERRRVEIARALAANPK 159 (243)
T ss_pred cccccc--hHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhch-HHHhcCcccccccchHHHHHHHHHHhcCCC
Confidence 777753 5677899999997654311 11236689999999 478899999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 564 lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
++|||||++|+||-+...+++++..+ +..|+++-|+..+...+|||.++|.+|++. ..|+-++..+
T Consensus 160 fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vl-a~G~p~ei~~ 228 (243)
T COG1137 160 FILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVL-AEGSPEEIVN 228 (243)
T ss_pred EEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEE-ecCCHHHHhc
Confidence 99999999999999999888887654 459999999999999999999999999998 5688777755
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=309.16 Aligned_cols=161 Identities=26% Similarity=0.431 Sum_probs=144.5
Q ss_pred cEEEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC-----------ceEEE
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (692)
Q Consensus 97 ~l~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~-----------~~i~~ 165 (692)
+|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 4 ~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (182)
T cd03215 4 VLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAY 79 (182)
T ss_pred EEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEE
Confidence 59999999999 8999999999999999999999999999999999999999999998732 25999
Q ss_pred EcccC---ccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHH
Q 005532 166 LSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 166 v~Q~~---~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
++|++ .+++..|++||+...
T Consensus 80 ~~q~~~~~~~~~~~t~~e~l~~~--------------------------------------------------------- 102 (182)
T cd03215 80 VPEDRKREGLVLDLSVAENIALS--------------------------------------------------------- 102 (182)
T ss_pred ecCCcccCcccCCCcHHHHHHHH---------------------------------------------------------
Confidence 99985 356678999886310
Q ss_pred hhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHHHH
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~~l 319 (692)
..||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|++||+++++
T Consensus 103 ---------------~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 167 (182)
T cd03215 103 ---------------SLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDEL 167 (182)
T ss_pred ---------------hhcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 00999999999999999999999999999999999999999887753 478999999999999
Q ss_pred HhhcCeEEEEecce
Q 005532 320 DQLCTKIVETEMGV 333 (692)
Q Consensus 320 ~~~~d~i~~l~~G~ 333 (692)
..+||+++++++|+
T Consensus 168 ~~~~d~v~~l~~G~ 181 (182)
T cd03215 168 LGLCDRILVMYEGR 181 (182)
T ss_pred HHhCCEEEEecCCc
Confidence 99999999999886
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=309.63 Aligned_cols=203 Identities=25% Similarity=0.389 Sum_probs=181.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccc------eeeeecccc
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQ 497 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~------~~~~~~q~~ 497 (692)
.+++++|+++||++.+++|+||++++|++.|++|+||+||||.+++|.|+++|++|+|.|+|.++ +++|++..
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEE- 80 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEE- 80 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhh-
Confidence 48999999999999999999999999999999999999999999999999999999999999776 36787754
Q ss_pred hhhcCCCccHHHHHHHHhccc--c----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCC
Q 005532 498 AEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571 (692)
Q Consensus 498 ~~~l~~~~tv~e~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPT 571 (692)
..+.+.+||.|.+...+... . ..++..||+++++. ....+++.+||-|++|++.|..+++++|++||||||+
T Consensus 81 -RGLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~-~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPF 158 (300)
T COG4152 81 -RGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIV-GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPF 158 (300)
T ss_pred -hccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccc-ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCc
Confidence 46889999999987764322 1 23578899999995 5678899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 572 NHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 572 n~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||.+.+.|.+.+.++ +.|||++||.++-++++||+++.|++|+.+. .|+..+...
T Consensus 159 SGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~-~G~v~~ir~ 219 (300)
T COG4152 159 SGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVL-YGTVEDIRR 219 (300)
T ss_pred cCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEE-eccHHHHHH
Confidence 999999999999998765 5699999999999999999999999999885 587766644
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=322.90 Aligned_cols=198 Identities=20% Similarity=0.364 Sum_probs=167.9
Q ss_pred EEEEeEEEEcC--CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eee
Q 005532 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 425 l~~~~l~~~y~--~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
|+++|++++|+ +.++|+++||+|++||++||+|+||||||||+++|+|+++ ++|+|.++|.++. .+|
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 88999999994 4679999999999999999999999999999999999997 7899999997641 356
Q ss_pred ecccchhhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCC-----------CCHHHHHHHHHHHHhccC
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~-----------LSgGqkqrv~LAral~~~ 561 (692)
++|+. .++ ..|+.+|+.... .+..+++.++++.+|+. ...++.+.. ||||||||++|||||+.+
T Consensus 82 v~q~~--~lf-~~tv~~nl~~~~-~~~~~~~~~~l~~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~ 156 (275)
T cd03289 82 IPQKV--FIF-SGTFRKNLDPYG-KWSDEEIWKVAEEVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSK 156 (275)
T ss_pred ECCCc--ccc-hhhHHHHhhhcc-CCCHHHHHHHHHHcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 66653 344 469999986332 24456778889999985 456666665 999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|+||||||||++||+.++..+.+.|++. +.|||+||||++++.. ||||++|++|+++.+ |..++.+.
T Consensus 157 p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~-g~~~~l~~ 225 (275)
T cd03289 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQY-DSIQKLLN 225 (275)
T ss_pred CCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeec-CCHHHHhh
Confidence 9999999999999999999999999864 3599999999999976 999999999999865 66555544
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=305.09 Aligned_cols=205 Identities=29% Similarity=0.452 Sum_probs=176.4
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
++++++||+..||...+|++|||++++||+++|+|+||+||||||++|+|+.+|.+|+|.++|.++. ..
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 5799999999999999999999999999999999999999999999999999999999999998873 24
Q ss_pred eecccchhhcCCCccHHHHHHHHhcccc-----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEE
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAEDWR-----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~~~~-----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLl 566 (692)
|++|. ..+++.+||.||+........ ...+..+++.|---.+..+++.++|||||||.++|||||+.+|++||
T Consensus 82 ~VPeg--R~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLL 159 (237)
T COG0410 82 YVPEG--RRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLL 159 (237)
T ss_pred eCccc--ccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEE
Confidence 66664 357899999999986532111 11145566665433466789999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHhcC---c-eEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 567 LDEPTNHLDIPSKEMLEEAISEYK---G-TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 567 LDEPTn~LD~~~~~~l~~~l~~~~---~-tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||.||-|.-.+.|.+.|++.. + ||++|-++..++.+++||.++|++|+++ +.|+-++...
T Consensus 160 LDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv-~~G~~~eL~~ 226 (237)
T COG0410 160 LDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIV-LSGTAAELLA 226 (237)
T ss_pred ecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEE-EecCHHHHhc
Confidence 999999999999999999988653 4 9999999999999999999999999998 6787666544
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=310.48 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=151.2
Q ss_pred cEEEEeEEEEeCC------eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEECCCC-------c
Q 005532 97 GVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-------M 161 (692)
Q Consensus 97 ~l~i~~ls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~I~~~~~~-------~ 161 (692)
.|+++|++|+|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.. .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 3899999999976 67999999999999999999999999999999999999 9999999998743 3
Q ss_pred eEEEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHH
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.++|++|++.+++..|+.+|+.... .
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~------------------------------------------------------~ 108 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA------------------------------------------------------K 108 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH------------------------------------------------------H
Confidence 5999999998877889999873100 0
Q ss_pred HhhhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA- 317 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~- 317 (692)
..+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|++|||++
T Consensus 109 ---------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 ---------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred ---------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchH
Confidence 017999999999999999999999999999999999999999887753 4889999999996
Q ss_pred HHHhhcCeEEEEecceEE
Q 005532 318 FLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 318 ~l~~~~d~i~~l~~G~~~ 335 (692)
.+..+||+++++++|++.
T Consensus 174 ~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 174 EIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHhcCEEEEEeCCEEE
Confidence 788999999999999874
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=323.89 Aligned_cols=205 Identities=27% Similarity=0.373 Sum_probs=171.3
Q ss_pred CCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce------
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL------ 489 (692)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~------ 489 (692)
..++|+++|+++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.++.
T Consensus 22 ~~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 22 EQTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CCcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 3457999999999998889999999999999999999999999999999999987 48999999886542
Q ss_pred ------eeeecccchhhcCCCccHHHHHHHHhc--c-cc----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHH
Q 005532 490 ------PNYFEQNQAEALDLDKTVLETVAEAAE--D-WR----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLA 553 (692)
Q Consensus 490 ------~~~~~q~~~~~l~~~~tv~e~~~~~~~--~-~~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~ 553 (692)
.+|++|.. .+.+ .|+.+|+..... . .. ...+.++++.+++.. ...++++.+|||||||||+
T Consensus 102 ~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~ 178 (272)
T PRK14236 102 AELRRRVGMVFQRP--NPFP-KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLV 178 (272)
T ss_pred HHHhccEEEEecCC--ccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHH
Confidence 24555542 3444 499999875321 1 11 134667788888742 3467889999999999999
Q ss_pred HHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 554 LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|||||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|++.. .|..+++.
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~~ 255 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVE-YGDTDTLF 255 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEe-cCCHHHHh
Confidence 999999999999999999999999999999999876 3699999999999999999999999999975 46666654
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=318.87 Aligned_cols=193 Identities=21% Similarity=0.323 Sum_probs=157.5
Q ss_pred ceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCC----CccEEEECCCC--------ceEEEEcccCc--cCCCCC
Q 005532 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIAFLSQEFE--VSMSRT 177 (692)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p----~~G~I~~~~~~--------~~i~~v~Q~~~--~~~~~T 177 (692)
+|+|+||+|++|++++|+||||||||||+++|+|+++| ++|+|.++|.+ ..|+|++|++. +.+..|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999999 89999998742 36999999985 334578
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCc--ccccc
Q 005532 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDR 255 (692)
Q Consensus 178 v~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~--~~~~~ 255 (692)
+.+|+...... . . ........++.++++.+|+.. ...++
T Consensus 81 ~~~~~~~~~~~--------------~-~------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 121 (230)
T TIGR02770 81 MGNHAIETLRS--------------L-G------------------------KLSKQARALILEALEAVGLPDPEEVLKK 121 (230)
T ss_pred HHHHHHHHHHH--------------c-C------------------------ccHHHHHHHHHHHHHHcCCCchHHHHhC
Confidence 98887421100 0 0 000112345667888888862 35688
Q ss_pred ccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc----CCCeEEEEecCHHHHHhhcCeEEEEec
Q 005532 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331 (692)
Q Consensus 256 ~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~----~~~tvI~vsHd~~~l~~~~d~i~~l~~ 331 (692)
++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++ .+.|||++||+++++..+||+|+++++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999998887753 478999999999999999999999999
Q ss_pred ceEEEeccChHHH
Q 005532 332 GVSRTYEGNYSQY 344 (692)
Q Consensus 332 G~~~~~~G~y~~~ 344 (692)
|++. ..|...++
T Consensus 202 G~i~-~~~~~~~~ 213 (230)
T TIGR02770 202 GRIV-ERGTVKEI 213 (230)
T ss_pred CEEE-EeCCHHHH
Confidence 9984 55654443
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=325.33 Aligned_cols=203 Identities=28% Similarity=0.371 Sum_probs=171.7
Q ss_pred eEEEEeEEEEcCC---eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------e
Q 005532 424 VVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (692)
Q Consensus 424 ~l~~~~l~~~y~~---~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~ 490 (692)
+|+++||++.|++ .++|+++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 6999999999974 35999999999999999999999999999999999999999999999986642 3
Q ss_pred eeecccchhhcCCCccHHHHHHHHhc--ccc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcE
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~l 564 (692)
+|++|+.. ...+..|+.+|+..... ... ...+..+++.+++. ...++++.+|||||||||+|||||+.+|+|
T Consensus 84 ~~v~q~~~-~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~l 161 (277)
T PRK13642 84 GMVFQNPD-NQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEI 161 (277)
T ss_pred EEEEECHH-HhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 56666532 23456799999975322 111 13467889999994 567899999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 565 LlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|||||||++||+.+++.+.+.|.++ +.|||+||||++++. .||+|++|++|+++. .|..+++..
T Consensus 162 lllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~-~g~~~~~~~ 229 (277)
T PRK13642 162 IILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIK-EAAPSELFA 229 (277)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-eCCHHHHhc
Confidence 9999999999999999999998754 569999999999997 599999999999975 477666643
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=320.05 Aligned_cols=201 Identities=25% Similarity=0.350 Sum_probs=168.4
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~--------- 489 (692)
+|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 5999999886541
Q ss_pred --eeeecccchhhcCCCccHHHHHHHHhccc---c----HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHHH
Q 005532 490 --PNYFEQNQAEALDLDKTVLETVAEAAEDW---R----IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (692)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~~~~~~~~~---~----~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAra 557 (692)
.+|++|+. .+.+ .|+.+|+....... . ...+.++++.+++.. +..++++.+|||||||||+||||
T Consensus 83 ~~i~~~~q~~--~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 83 IKVGMVFQKP--NPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred hheeEEecCC--CcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 34555543 3444 79999987542111 1 123556777777642 34678899999999999999999
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 558 l~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
|+.+|+||||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|++|++.. .|..+++
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 231 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVE-HDDTQVI 231 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999999999876 3599999999999999999999999999985 4665554
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=321.44 Aligned_cols=201 Identities=26% Similarity=0.376 Sum_probs=167.8
Q ss_pred EEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce----------
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 425 l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~---------- 489 (692)
-+++||++.|+++++|+++||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 478999999998899999999999999999999999999999999999986 47999999886541
Q ss_pred --eeeecccchhhcCCCccHHHHHHHHhc--cc------cHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHH
Q 005532 490 --PNYFEQNQAEALDLDKTVLETVAEAAE--DW------RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 --~~~~~q~~~~~l~~~~tv~e~~~~~~~--~~------~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|++|+. .+.+ .|+.+|+..... .. ....+.++++.+++.. ...++++.+|||||||||+|||
T Consensus 86 ~~i~~v~q~~--~~~~-~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 86 AKVGMVFQKP--NPFP-KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred hhEEEEecCc--cccc-CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 34666653 3444 499999875421 10 1234667899999853 2457789999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
+|+.+|+||||||||++||+.+++.+.+.|.++ +.|||+||||.+++..+||+|++|++|++.. .|..+++.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~~ 236 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVE-YNTTQEIF 236 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEE-eCCHHHHh
Confidence 999999999999999999999999999999876 3599999999999999999999999999985 46655543
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=337.59 Aligned_cols=210 Identities=27% Similarity=0.422 Sum_probs=165.7
Q ss_pred CcEEEEeEEEEeCCee-ceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCc----------eEE
Q 005532 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~----------~i~ 164 (692)
..|+++||+|+|++++ +|+++||+|++||.+||||+|||||||++|+|.++++ ++|+|.++|.+. .||
T Consensus 350 ~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 350 GSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred CcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhhee
Confidence 3499999999998876 9999999999999999999999999999999999999 999999998643 599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
||||+..+ ++.||..||..+-... ..+++.+.++.. .+.+...
T Consensus 429 ~VPQd~~L-FndTIl~NI~YGn~sa-----s~eeV~e~~k~a-------------------------------~~hd~i~ 471 (591)
T KOG0057|consen 429 VVPQDSVL-FNDTILYNIKYGNPSA-----SDEEVVEACKRA-------------------------------GLHDVIS 471 (591)
T ss_pred EeCCcccc-cchhHHHHhhcCCCCc-----CHHHHHHHHHHc-------------------------------CcHHHHH
Confidence 99999776 8889999996432110 001111111110 1112222
Q ss_pred hc--CCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHH
Q 005532 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (692)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~ 320 (692)
.+ |..+..++ ....|||||||||+||||++++|+|+++|||||+||.++...+.+.+.+ .++|+|+|.|+++.+.
T Consensus 472 ~l~~GY~T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~ 550 (591)
T KOG0057|consen 472 RLPDGYQTLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK 550 (591)
T ss_pred hccccchhhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh
Confidence 22 22222222 3688999999999999999999999999999999999999999887754 5899999999999998
Q ss_pred hhcCeEEEEecceEEEeccChHHHHH
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 321 ~~~d~i~~l~~G~~~~~~G~y~~~~~ 346 (692)
+ ||+|+++++|++..+ |+.++.+.
T Consensus 551 ~-~DkI~~l~nG~v~e~-gth~ell~ 574 (591)
T KOG0057|consen 551 D-FDKIIVLDNGTVKEY-GTHSELLA 574 (591)
T ss_pred c-CCEEEEEECCeeEEe-ccHHHHhh
Confidence 6 999999999998655 66555544
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-38 Score=310.29 Aligned_cols=170 Identities=24% Similarity=0.330 Sum_probs=149.9
Q ss_pred cEEEEeEEEEeCC----eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCC--CCCccEEEECCCC------ceEE
Q 005532 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN------MKIA 164 (692)
Q Consensus 97 ~l~i~~ls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~--~p~~G~I~~~~~~------~~i~ 164 (692)
.|+++|+++.|++ +++|+++||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999975 67999999999999999999999999999999999986 4899999998744 3699
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+++..|+++|+.... .
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~-------------------------------------------------------~-- 105 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA-------------------------------------------------------L-- 105 (192)
T ss_pred EecccCccccCCcHHHHHHHHH-------------------------------------------------------H--
Confidence 9999988877889999974100 0
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---CCCeEEEEecCHH-HHH
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLD 320 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~~~tvI~vsHd~~-~l~ 320 (692)
..+|||||+|||+|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+|||+++ .+.
T Consensus 106 ------------~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~ 173 (192)
T cd03232 106 ------------LRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIF 173 (192)
T ss_pred ------------HhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHH
Confidence 007999999999999999999999999999999999999999887753 4899999999998 478
Q ss_pred hhcCeEEEEec-ceEE
Q 005532 321 QLCTKIVETEM-GVSR 335 (692)
Q Consensus 321 ~~~d~i~~l~~-G~~~ 335 (692)
.+||+|+++++ |++.
T Consensus 174 ~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 174 EKFDRLLLLKRGGKTV 189 (192)
T ss_pred hhCCEEEEEcCCCeEE
Confidence 89999999998 8874
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=319.12 Aligned_cols=200 Identities=25% Similarity=0.478 Sum_probs=162.6
Q ss_pred EEEEeEEEEcCC--eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eee
Q 005532 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 425 l~~~~l~~~y~~--~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
|+++|+++.|++ +++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999973 57999999999999999999999999999999999999999999999986541 456
Q ss_pred ecccchhhcCCCccHHHHHHHHhccccHHHH---------HHHHhhc--CCCcccccccCCCCCHHHHHHHHHHHHhccC
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDI---------KGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~~---------~~~L~~~--~l~~~~~~~~~~~LSgGqkqrv~LAral~~~ 561 (692)
++|+. .+ ...|+.+|+...........+ ..++..+ ++. ...++++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~--~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~ 156 (237)
T cd03252 81 VLQEN--VL-FNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHN 156 (237)
T ss_pred EcCCc--hh-ccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCccccc-chhhcCCCcCCHHHHHHHHHHHHHhhC
Confidence 66653 33 356999998753221112122 2334444 332 335678999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~~ 630 (692)
|++|||||||++||+.+++.+.+.|.++ +.|||++|||++++. .||++++|++|++.. .|+.+++..
T Consensus 157 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~-~~~~~~~~~ 225 (237)
T cd03252 157 PRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVE-QGSHDELLA 225 (237)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEE-EcCHHHHHh
Confidence 9999999999999999999999999876 359999999999996 599999999999984 476665543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=331.33 Aligned_cols=209 Identities=27% Similarity=0.396 Sum_probs=174.0
Q ss_pred CCCCCceEEEEeEEEEcC--CeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce-
Q 005532 418 GRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL- 489 (692)
Q Consensus 418 ~~~~~~~l~~~~l~~~y~--~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~- 489 (692)
.|+...+|+++|++++|. .+++|+|+||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|.++.
T Consensus 74 ~~~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~ 153 (329)
T PRK14257 74 DFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRS 153 (329)
T ss_pred CCCcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccc
Confidence 366677899999999995 3579999999999999999999999999999999999986 57999999988752
Q ss_pred -----------eeeecccchhhcCCCccHHHHHHHHhcc--cc-H----HHHHHHHhhcCCCc---ccccccCCCCCHHH
Q 005532 490 -----------PNYFEQNQAEALDLDKTVLETVAEAAED--WR-I----DDIKGLLGRCNFKA---DMLDRKVSLLSGGE 548 (692)
Q Consensus 490 -----------~~~~~q~~~~~l~~~~tv~e~~~~~~~~--~~-~----~~~~~~L~~~~l~~---~~~~~~~~~LSgGq 548 (692)
.+|++|.+ .+ ...|+.+|+...... .. . ..+..+++.+++.. ...++++.+|||||
T Consensus 154 ~~~~~~~lr~~i~~v~q~~--~~-~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGq 230 (329)
T PRK14257 154 KKISSLELRTRIGMVFQKP--TP-FEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQ 230 (329)
T ss_pred cccchHhhhccEEEEecCC--cc-CCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHH
Confidence 34566643 33 358999999854211 11 1 12566788887632 24578899999999
Q ss_pred HHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEECCEEEEecCChh
Q 005532 549 KARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYN 626 (692)
Q Consensus 549 kqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~ 626 (692)
||||+|||||+.+|+||||||||++||+.+...+.+.|+++. .|||+|||+++++.++||||++|++|++.++ |...
T Consensus 231 kqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~-g~~~ 309 (329)
T PRK14257 231 QQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEA-GETK 309 (329)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEe-CCHH
Confidence 999999999999999999999999999999999999998763 6999999999999999999999999999865 7766
Q ss_pred HHHH
Q 005532 627 YYLE 630 (692)
Q Consensus 627 ~~~~ 630 (692)
+...
T Consensus 310 ~l~~ 313 (329)
T PRK14257 310 TIFI 313 (329)
T ss_pred HHhc
Confidence 6543
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=317.98 Aligned_cols=199 Identities=26% Similarity=0.456 Sum_probs=163.9
Q ss_pred EEEEeEEEEcCCe--ecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eee
Q 005532 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 425 l~~~~l~~~y~~~--~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
|+++|+++.|+++ .+|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999865 7999999999999999999999999999999999999999999999886542 346
Q ss_pred ecccchhhcCCCccHHHHHHHHhccccHHH---------HHHHHhhc--CCCcccccccCCCCCHHHHHHHHHHHHhccC
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDD---------IKGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 493 ~~q~~~~~l~~~~tv~e~~~~~~~~~~~~~---------~~~~L~~~--~l~~~~~~~~~~~LSgGqkqrv~LAral~~~ 561 (692)
++|+. .+. ..|+.+|+........... +.++++.+ ++. ...++++.+|||||||||+|||||+.+
T Consensus 81 ~~q~~--~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~ 156 (234)
T cd03251 81 VSQDV--FLF-NDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKD 156 (234)
T ss_pred eCCCC--eec-cccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcC
Confidence 66553 333 4699999875432222111 23444444 453 346778999999999999999999999
Q ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 562 p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
|++|||||||++||+.+++.+.+.|+++ +.|||+||||++++.. ||++++|++|++.. .|+.+++.
T Consensus 157 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~-~~~~~~~~ 224 (234)
T cd03251 157 PPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVE-RGTHEELL 224 (234)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEee-eCCHHHHH
Confidence 9999999999999999999999999876 4599999999999976 99999999999974 57766654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=319.88 Aligned_cols=200 Identities=28% Similarity=0.379 Sum_probs=161.1
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCC--CCCeeEEEECCccce-----------e
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLLGEHNVL-----------P 490 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~--~p~~G~i~~~~~~~~-----------~ 490 (692)
+|+++||++.|+++++|+++||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.++. .
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 488999999999888999999999999999999999999999999999995 699999999986541 2
Q ss_pred eeecccchhhcCCCccHHHHHHHHh-------c-----ccc-HHHHHHHHhhcCCCcccccccCC-CCCHHHHHHHHHHH
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAA-------E-----DWR-IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKARLAFCK 556 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~tv~e~~~~~~-------~-----~~~-~~~~~~~L~~~~l~~~~~~~~~~-~LSgGqkqrv~LAr 556 (692)
+|+.|.. .+.+..+...++.... . .+. ...+..+++.++++....++++. +|||||||||+|||
T Consensus 81 ~~~~q~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~lar 158 (248)
T PRK09580 81 FMAFQYP--VEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQ 158 (248)
T ss_pred EEEecCc--hhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHH
Confidence 3444432 2233334433322110 0 001 12356788888886555677775 79999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhh-ccEEEEEECCEEEEecCChh
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQI-VNRVVEVKGSNLQDYAGDYN 626 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~-~d~i~~l~~g~l~~~~g~~~ 626 (692)
||+.+|+||||||||++||+.+++.+.+.|+++ ++|||+||||++++..+ ||+|++|++|++. +.|+++
T Consensus 159 al~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~-~~g~~~ 231 (248)
T PRK09580 159 MAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIV-KSGDFT 231 (248)
T ss_pred HHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEE-EeCCHH
Confidence 999999999999999999999999999988754 46999999999999987 8999999999997 457766
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=353.31 Aligned_cols=195 Identities=21% Similarity=0.272 Sum_probs=170.9
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------ee
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
++|+++|+++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 4799999999999888999999999999999999999999999999999999999999999886542 35
Q ss_pred eecccchhhcCCCccHHHHHHHHhc----c-cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCC
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE----D-WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 492 ~~~q~~~~~l~~~~tv~e~~~~~~~----~-~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p 562 (692)
|++|+ ..+.+..|+.+|+..... . .. ...+.++++.+++. ...++++.+|||||||||+|||||+.+|
T Consensus 83 ~v~q~--~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p 159 (501)
T PRK11288 83 IIYQE--LHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNA 159 (501)
T ss_pred EEEec--hhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCC
Confidence 66665 346677899999876321 1 11 23577899999995 5578899999999999999999999999
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 563 ~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
+||||||||++||+.+++++.+.|+++ +.|||+||||++++..+||+|++|++|++..
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~ 220 (501)
T PRK11288 160 RVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVA 220 (501)
T ss_pred CEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999865 4699999999999999999999999999874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=353.48 Aligned_cols=202 Identities=23% Similarity=0.293 Sum_probs=174.4
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC--CeeEEEECCccce-----------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVL----------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p--~~G~i~~~~~~~~----------- 489 (692)
++|+++|++++|+++.+|+++||+|++|+++||+||||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 479999999999988899999999999999999999999999999999999986 8999999886541
Q ss_pred eeeecccchhhcCCCccHHHHHHHHhcc-----cc----HHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhcc
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAED-----WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~tv~e~~~~~~~~-----~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~ 560 (692)
.+|++|+. .+.+..|+.+|+...... .. ...+.++++.+++. ...++++.+|||||||||+|||||+.
T Consensus 84 i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~ 160 (506)
T PRK13549 84 IAIIHQEL--ALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLD-INPATPVGNLGLGQQQLVEIAKALNK 160 (506)
T ss_pred eEEEEecc--ccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhc
Confidence 35666653 456778999998754211 11 23577899999995 56789999999999999999999999
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHH
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 561 ~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~ 628 (692)
+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||+|++|++|+++. .|+.+++
T Consensus 161 ~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~ 230 (506)
T PRK13549 161 QARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIG-TRPAAGM 230 (506)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEee-ecccccC
Confidence 99999999999999999999999999765 4699999999999999999999999999874 4555444
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=321.48 Aligned_cols=202 Identities=25% Similarity=0.362 Sum_probs=168.3
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCC-----eeEEEECCccce---------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-----GGEVLLGEHNVL--------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~-----~G~i~~~~~~~~--------- 489 (692)
+|+++|+++.|+++.+|+++||+|++|+++||+|+||||||||+++|+|+++|+ +|+|.++|.++.
T Consensus 7 ~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 7 AIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred eEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 599999999998888999999999999999999999999999999999999985 899999886541
Q ss_pred ---eeeecccchhhcCCCccHHHHHHHHhcc----c--c-HHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHH
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAED----W--R-IDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~tv~e~~~~~~~~----~--~-~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAr 556 (692)
.+|++|+. .+.+ .|+.+|+...... . . ...+..+++.+++.. ...++++.+|||||||||+|||
T Consensus 87 ~~~i~~~~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 163 (261)
T PRK14258 87 RRQVSMVHPKP--NLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIAR 163 (261)
T ss_pred hccEEEEecCC--ccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHH
Confidence 23444442 3444 7999998754211 1 1 234667888888732 3467889999999999999999
Q ss_pred HhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc----CceEEEEecCHHHHHhhccEEEEEEC-----CEEEEecCChhH
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKG-----SNLQDYAGDYNY 627 (692)
Q Consensus 557 al~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~----~~tviivSHd~~~l~~~~d~i~~l~~-----g~l~~~~g~~~~ 627 (692)
+|+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++.++||+|++|++ |+++. .|..++
T Consensus 164 al~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~ 242 (261)
T PRK14258 164 ALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE-FGLTKK 242 (261)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEE-eCCHHH
Confidence 999999999999999999999999999998763 56999999999999999999999999 99874 466655
Q ss_pred HH
Q 005532 628 YL 629 (692)
Q Consensus 628 ~~ 629 (692)
..
T Consensus 243 ~~ 244 (261)
T PRK14258 243 IF 244 (261)
T ss_pred HH
Confidence 53
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=358.75 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=165.6
Q ss_pred CcEEEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEE
Q 005532 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (692)
Q Consensus 96 ~~l~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~ 164 (692)
..|+++|++|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 339 ~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~ 418 (592)
T PRK10790 339 GRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVA 418 (592)
T ss_pred CeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheE
Confidence 35999999999975 569999999999999999999999999999999999999999999999853 3599
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|+|.+ ++.|+++||..+- + ... +++.++++.+ .+.+.+.++
T Consensus 419 ~v~Q~~~l-F~~Ti~~NI~~~~-~-~~d----~~i~~a~~~~---------------------------gl~~~i~~l-- 462 (592)
T PRK10790 419 MVQQDPVV-LADTFLANVTLGR-D-ISE----EQVWQALETV---------------------------QLAELARSL-- 462 (592)
T ss_pred EEccCCcc-ccchHHHHHHhCC-C-CCH----HHHHHHHHHc---------------------------CcHHHHHhc--
Confidence 99999987 5679999996431 1 000 1111111111 111112221
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~ 322 (692)
.-|+++... ....+||||||||++|||||+.+|+||||||||++||+++.+.+.+.|++ .++|+|+|||+++.+..
T Consensus 463 p~Gldt~i~-e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~- 540 (592)
T PRK10790 463 PDGLYTPLG-EQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVE- 540 (592)
T ss_pred ccccccccc-CCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHh-
Confidence 013433222 24678999999999999999999999999999999999999999888764 47999999999988875
Q ss_pred cCeEEEEecceEEEeccChHHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
||+|+++++|++. ..|++++.+
T Consensus 541 ~D~ii~l~~G~i~-~~G~~~~L~ 562 (592)
T PRK10790 541 ADTILVLHRGQAV-EQGTHQQLL 562 (592)
T ss_pred CCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999984 568876654
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=309.83 Aligned_cols=173 Identities=31% Similarity=0.514 Sum_probs=142.1
Q ss_pred EEEeEEEEeCCeeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCCceEEEEcccCccCCCCCH
Q 005532 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (692)
Q Consensus 99 ~i~~ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~~~i~~v~Q~~~~~~~~Tv 178 (692)
+++|++++|+++++|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .+. .....
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~-----~~~----~~~~~ 71 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDL-----ASL----SPKEL 71 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEC-----CcC----CHHHH
Confidence 368999999888899999999999999999999999999999999999999999999885321 000 00000
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhhhcCCCccccccccc
Q 005532 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (692)
Q Consensus 179 ~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~ 258 (692)
+..+.. +.++++.+|+. +..++.+.
T Consensus 72 ~~~i~~------------------------------------------------------~~q~l~~~gl~-~~~~~~~~ 96 (180)
T cd03214 72 ARKIAY------------------------------------------------------VPQALELLGLA-HLADRPFN 96 (180)
T ss_pred HHHHhH------------------------------------------------------HHHHHHHcCCH-hHhcCCcc
Confidence 000000 00145566775 45577889
Q ss_pred cCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc---C-CCeEEEEecCHHHHHhhcCeEEEEecceE
Q 005532 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (692)
Q Consensus 259 ~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~---~-~~tvI~vsHd~~~l~~~~d~i~~l~~G~~ 334 (692)
+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ . +.|+|++||+++++..+||+++++++|++
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999887753 3 78999999999999999999999999987
Q ss_pred E
Q 005532 335 R 335 (692)
Q Consensus 335 ~ 335 (692)
.
T Consensus 177 ~ 177 (180)
T cd03214 177 V 177 (180)
T ss_pred E
Confidence 4
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-37 Score=322.33 Aligned_cols=203 Identities=25% Similarity=0.316 Sum_probs=167.9
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~~-------- 489 (692)
++|+++||++.|+++++|+++||+|++||++||+|+||||||||+++|+|++. |++|+|.++|.++.
T Consensus 9 ~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred eEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 47999999999998889999999999999999999999999999999999976 48999999886541
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhccc-----cHHHHHHHHhhcCCCc---ccccccCCCCCHHHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAEDW-----RIDDIKGLLGRCNFKA---DMLDRKVSLLSGGEKARLAFCKF 557 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~~-----~~~~~~~~L~~~~l~~---~~~~~~~~~LSgGqkqrv~LAra 557 (692)
.+|+.|+. .+.+ .|+.+|+....... ....+..+++.+++.. ...++++.+|||||||||+||||
T Consensus 89 ~~~~i~~v~q~~--~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~lara 165 (264)
T PRK14243 89 VRRRIGMVFQKP--NPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARA 165 (264)
T ss_pred HhhhEEEEccCC--cccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHH
Confidence 34556543 3333 59999987542211 1223556677777631 24577899999999999999999
Q ss_pred hccCCcEEEEeCCCCCCCHHHHHHHHHHHHhcC--ceEEEEecCHHHHHhhccEEEEEE---------CCEEEEecCChh
Q 005532 558 MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVEVK---------GSNLQDYAGDYN 626 (692)
Q Consensus 558 l~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~~--~tviivSHd~~~l~~~~d~i~~l~---------~g~l~~~~g~~~ 626 (692)
|+.+|+||||||||++||+.+++++.+.|.++. .|||+||||++++..+||+|++|+ +|+++. .|..+
T Consensus 166 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~-~~~~~ 244 (264)
T PRK14243 166 IAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE-FDRTE 244 (264)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE-eCCHH
Confidence 999999999999999999999999999998763 599999999999999999999998 788874 46665
Q ss_pred HHH
Q 005532 627 YYL 629 (692)
Q Consensus 627 ~~~ 629 (692)
++.
T Consensus 245 ~~~ 247 (264)
T PRK14243 245 KIF 247 (264)
T ss_pred HHH
Confidence 554
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-38 Score=291.42 Aligned_cols=193 Identities=28% Similarity=0.424 Sum_probs=168.1
Q ss_pred eEEEEeEEEEcCC----eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------
Q 005532 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~l~~~~l~~~y~~----~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+|+++++++..+. -.+|++|+|.|.+||.+|||||+||||||||-+++|+..|++|+|.+.|+++.
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 6899999998864 46999999999999999999999999999999999999999999999887652
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc------ccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhc
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~------~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~ 559 (692)
.++++|. ..+.+++|..||+...... .....++.+|+.+|+. ..++.+|.+|||||||||+|||||.
T Consensus 86 R~~~vGfVFQS--F~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa 162 (228)
T COG4181 86 RARHVGFVFQS--FHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFA 162 (228)
T ss_pred hccceeEEEEe--eeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhc
Confidence 3556653 4678999999998754321 1234578899999995 6788899999999999999999999
Q ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHh----cCceEEEEecCHHHHHhhccEEEEEECCEEEE
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 560 ~~p~lLlLDEPTn~LD~~~~~~l~~~l~~----~~~tviivSHd~~~l~~~~d~i~~l~~g~l~~ 620 (692)
..|+||+.||||.+||.++-+.+.++|-. .+.|+|+||||..++.+ |+|++.|..|+++.
T Consensus 163 ~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~R-c~R~~r~~~G~l~~ 226 (228)
T COG4181 163 GRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAAR-CDRQLRLRSGRLVE 226 (228)
T ss_pred CCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHh-hhheeeeecceecc
Confidence 99999999999999999999998888753 45699999999999988 99999999999873
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=314.78 Aligned_cols=196 Identities=21% Similarity=0.335 Sum_probs=150.0
Q ss_pred EEEeEEEEeCC-eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC--------------ceE
Q 005532 99 KLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (692)
Q Consensus 99 ~i~~ls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~--------------~~i 163 (692)
.+.|+.|+|++ .++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.. ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 57899999974 579999999999999999999999999999999999999999999997632 359
Q ss_pred EEEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHh
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.++ ..|+++|+....... . +.....++ . . .+...+. .+
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~~--~----~~~~~~~~--------------~----------~---~l~~~~~-~~ 126 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPFN--K----QRYKAVTD--------------A----------C---SLQPDID-LL 126 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcCC--H----HHHHHHHH--------------H----------h---CcHHHHH-hC
Confidence 9999999775 679999985321000 0 00000000 0 0 0000010 00
Q ss_pred hhcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHH--H---HccCCCeEEEEecCHHH
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG--Y---LGKQDVPMVIISHDRAF 318 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~--~---L~~~~~tvI~vsHd~~~ 318 (692)
..|.. ...+.++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+ + +++.+.|+|++||+.++
T Consensus 127 -~~~~~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 127 -PFGDQ-TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred -cCccc-cCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 11221 23456789999999999999999999999999999999999999887765 3 44568999999999999
Q ss_pred HHhhcCeEEEEecc
Q 005532 319 LDQLCTKIVETEMG 332 (692)
Q Consensus 319 l~~~~d~i~~l~~G 332 (692)
+. .||+++++++|
T Consensus 205 ~~-~~d~i~~l~~G 217 (218)
T cd03290 205 LP-HADWIIAMKDG 217 (218)
T ss_pred Hh-hCCEEEEecCC
Confidence 86 69999999876
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=315.40 Aligned_cols=189 Identities=28% Similarity=0.412 Sum_probs=159.9
Q ss_pred eEEEEeEEEEcCC-------eecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEEC--Cc--cc----
Q 005532 424 VVTIKNLEFGYED-------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EH--NV---- 488 (692)
Q Consensus 424 ~l~~~~l~~~y~~-------~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~--~~--~~---- 488 (692)
+|+++|+++.|+. ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |. ++
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999962 479999999999999999999999999999999999999999999997 32 22
Q ss_pred ----------eeeeecccchhhcCCCccHHHHHHHHhc--cc----cHHHHHHHHhhcCCCcccccccCCCCCHHHHHHH
Q 005532 489 ----------LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552 (692)
Q Consensus 489 ----------~~~~~~q~~~~~l~~~~tv~e~~~~~~~--~~----~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv 552 (692)
..+|++|+ ..+.+..|+.+++..... .. ....+.++++.+++.....++++.+||||||||+
T Consensus 81 ~~~~~~~~~~~i~~~~q~--~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl 158 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQF--LRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRV 158 (224)
T ss_pred HHHHHHHHhcceEEEecc--cccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHH
Confidence 13466664 346677899999865321 11 1235678899999964445789999999999999
Q ss_pred HHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEE
Q 005532 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVK 614 (692)
Q Consensus 553 ~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~ 614 (692)
+|||||+.+|++|||||||++||+.+++.+.+.|+++ +.|||+||||.+++..+||+++.+.
T Consensus 159 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999999999999999999865 4599999999999999999999874
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=357.17 Aligned_cols=212 Identities=23% Similarity=0.409 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCC--eeceeeeeEEEECCcEEEEEcCCCccHHHHHHHHHCCCCCCccEEEECCCC----------ceEE
Q 005532 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (692)
Q Consensus 97 ~l~i~~ls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl~~L~G~~~p~~G~I~~~~~~----------~~i~ 164 (692)
.|+++|++|+|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 5999999999975 569999999999999999999999999999999999999999999999853 3699
Q ss_pred EEcccCccCCCCCHHHHHHhhhHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHhhcCcccHHHHHHHHhh
Q 005532 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (692)
Q Consensus 165 ~v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~ 244 (692)
|++|++.+ ++.|++|||..+..+.... +++.++++.+ .+.+.+.++
T Consensus 421 ~v~Q~~~l-f~~Ti~~Ni~~~~~~~~~~----~~i~~al~~~---------------------------~l~~~i~~l-- 466 (582)
T PRK11176 421 LVSQNVHL-FNDTIANNIAYARTEQYSR----EQIEEAARMA---------------------------YAMDFINKM-- 466 (582)
T ss_pred EEccCcee-ecchHHHHHhcCCCCCCCH----HHHHHHHHHh---------------------------CcHHHHHhc--
Confidence 99999887 5689999997431110000 1111111111 011111111
Q ss_pred hcCCCccccccccccCChHHHHHHHHHHHHccCCCeEEEcCCCCCCCHHHHHHHHHHHcc--CCCeEEEEecCHHHHHhh
Q 005532 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (692)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~lLLLDEPts~LD~~~~~~L~~~L~~--~~~tvI~vsHd~~~l~~~ 322 (692)
.-|+.+...+ ...+||||||||++|||||+++|+||||||||++||+++...+.+.|.+ .++|+|+|||+++.+. .
T Consensus 467 p~Gldt~ig~-~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~ 544 (582)
T PRK11176 467 DNGLDTVIGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-K 544 (582)
T ss_pred ccccCceeCC-CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-h
Confidence 1144333333 3578999999999999999999999999999999999999999887754 4799999999998876 4
Q ss_pred cCeEEEEecceEEEeccChHHHH
Q 005532 323 CTKIVETEMGVSRTYEGNYSQYV 345 (692)
Q Consensus 323 ~d~i~~l~~G~~~~~~G~y~~~~ 345 (692)
||+|+++++|++. -.|.+++..
T Consensus 545 ~D~Ii~l~~g~i~-e~g~~~~l~ 566 (582)
T PRK11176 545 ADEILVVEDGEIV-ERGTHAELL 566 (582)
T ss_pred CCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999984 567766543
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=306.33 Aligned_cols=166 Identities=25% Similarity=0.444 Sum_probs=144.8
Q ss_pred CceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce-----------e
Q 005532 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (692)
Q Consensus 422 ~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~-----------~ 490 (692)
.++|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 2 ~~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (182)
T cd03215 2 EPVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGI 77 (182)
T ss_pred CcEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCe
Confidence 3479999999998 899999999999999999999999999999999999999999999986542 2
Q ss_pred eeecccch-hhcCCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeC
Q 005532 491 NYFEQNQA-EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 491 ~~~~q~~~-~~l~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDE 569 (692)
+|+.|+.. ..+.+..|+.+|+..... |||||||||+|||||+.+|+||||||
T Consensus 78 ~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------LS~G~~qrl~la~al~~~p~llllDE 130 (182)
T cd03215 78 AYVPEDRKREGLVLDLSVAENIALSSL---------------------------LSGGNQQKVVLARWLARDPRVLILDE 130 (182)
T ss_pred EEecCCcccCcccCCCcHHHHHHHHhh---------------------------cCHHHHHHHHHHHHHccCCCEEEECC
Confidence 35555422 235566788888754210 99999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEE
Q 005532 570 PTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNL 618 (692)
Q Consensus 570 PTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l 618 (692)
||++||+.+++.+.+.|+++ +.|+|++|||++++.++||++++|++|++
T Consensus 131 P~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 131 PTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999876 45999999999999999999999998864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=326.67 Aligned_cols=212 Identities=24% Similarity=0.380 Sum_probs=174.7
Q ss_pred cCCCCCCCCceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCC-----CCeeEEEECCccc
Q 005532 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEVLLGEHNV 488 (692)
Q Consensus 414 ~~~~~~~~~~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~-----p~~G~i~~~~~~~ 488 (692)
|........++|.++||++.|+++.+|+++||+|.+|+++||+|+||||||||+++|+|+++ |++|+|.++|.++
T Consensus 35 ~~~~~~~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i 114 (305)
T PRK14264 35 WTDYEFDGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDI 114 (305)
T ss_pred ccccccCCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEc
Confidence 33334556678999999999998899999999999999999999999999999999999986 6899999988654
Q ss_pred e------------eeeecccchhhcCCCccHHHHHHHHhcc-------------------ccHHHHHHHHhhcCCCc---
Q 005532 489 L------------PNYFEQNQAEALDLDKTVLETVAEAAED-------------------WRIDDIKGLLGRCNFKA--- 534 (692)
Q Consensus 489 ~------------~~~~~q~~~~~l~~~~tv~e~~~~~~~~-------------------~~~~~~~~~L~~~~l~~--- 534 (692)
. .+|++|+. .+.+ .|+.+|+...... .....+..+++.+++..
T Consensus 115 ~~~~~~~~~~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 115 YQDGVNLVELRKRVGMVFQSP--NPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred ccccccHHHHhhceEEEccCC--cccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 2 34666653 3433 5999998753210 01234677888888742
Q ss_pred ccccccCCCCCHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEE-E
Q 005532 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRV-V 611 (692)
Q Consensus 535 ~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i-~ 611 (692)
...++++.+|||||||||+|||||+.+|+||||||||++||+.++..|.++|+++ +.|||+||||++++..+||++ +
T Consensus 192 ~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~ 271 (305)
T PRK14264 192 DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAV 271 (305)
T ss_pred HHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEE
Confidence 3457889999999999999999999999999999999999999999999999877 459999999999999999997 5
Q ss_pred EEECCEEEEecCChhHHH
Q 005532 612 EVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 612 ~l~~g~l~~~~g~~~~~~ 629 (692)
+|++|+++. .|+.+++.
T Consensus 272 ~l~~G~i~~-~g~~~~~~ 288 (305)
T PRK14264 272 FLTGGELVE-YDDTDKIF 288 (305)
T ss_pred EecCCEEEE-eCCHHHHH
Confidence 679999985 47666554
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=352.56 Aligned_cols=202 Identities=23% Similarity=0.320 Sum_probs=169.7
Q ss_pred eEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCCCeeEEEECCccce----------eeee
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYF 493 (692)
Q Consensus 424 ~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p~~G~i~~~~~~~~----------~~~~ 493 (692)
+|+++|+++.|+++.+|+++||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 699999999999888999999999999999999999999999999999999999999998775431 2344
Q ss_pred cccchhhc------CCCccHHHHHHHHhccccHHHHHHHHhhcCCCcccccccCCCCCHHHHHHHHHHHHhccCCcEEEE
Q 005532 494 EQNQAEAL------DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVL 567 (692)
Q Consensus 494 ~q~~~~~l------~~~~tv~e~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrv~LAral~~~p~lLlL 567 (692)
.|+....+ ....++.+++.... .....+..+++.+++. +..++++.+|||||||||+||+||+.+|++|||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllL 159 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLIL 159 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 55422111 11457777764321 1134577899999995 567999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHhc---CceEEEEecCHHHHHhhccEEEEEECCEEEEecCChhHHH
Q 005532 568 DEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 568 DEPTn~LD~~~~~~l~~~l~~~---~~tviivSHd~~~l~~~~d~i~~l~~g~l~~~~g~~~~~~ 629 (692)
||||++||+.+++++.+.|.++ +.|||+||||++++.++||+|++|++|++.. .|+.+++.
T Consensus 160 DEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~-~~~~~~~~ 223 (490)
T PRK10938 160 DEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAE-TGEREEIL 223 (490)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEE-eCCHHHHh
Confidence 9999999999999999999876 4599999999999999999999999999974 47766554
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=319.74 Aligned_cols=203 Identities=24% Similarity=0.305 Sum_probs=169.1
Q ss_pred ceEEEEeEEEEcCCeecccceeEEEeCCCEEEEEcCCCCcHHHHHHHHhcCCCC-----CeeEEEECCccce--------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-----RGGEVLLGEHNVL-------- 489 (692)
Q Consensus 423 ~~l~~~~l~~~y~~~~~l~~isl~i~~Ge~v~lvG~NGsGKSTLl~~L~g~~~p-----~~G~i~~~~~~~~-------- 489 (692)
++|+++||++.|+++.+|+++||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 369999999999888899999999999999999999999999999999999985 4899999886541
Q ss_pred ----eeeecccchhhcCCCccHHHHHHHHhcc------cc-HHHHHHHHhhcCCC---cccccccCCCCCHHHHHHHHHH
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAED------WR-IDDIKGLLGRCNFK---ADMLDRKVSLLSGGEKARLAFC 555 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~tv~e~~~~~~~~------~~-~~~~~~~L~~~~l~---~~~~~~~~~~LSgGqkqrv~LA 555 (692)
.+|++|+. .+++ .|+.+|+...... +. ...+.++++.+++. ....++++.+|||||||||+||
T Consensus 86 ~~~~i~~v~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 86 LRRQIGMVFQRP--NPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred hhhheEEEeccc--ccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 34555543 3444 8999998754211 11 12456778888873 2356788999999999999999
Q ss_pred HHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHhc--CceEEEEecCHHHHHhhccEEEEEE-----CCEEEEecCChhHH
Q 005532 556 KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVK-----GSNLQDYAGDYNYY 628 (692)
Q Consensus 556 ral~~~p~lLlLDEPTn~LD~~~~~~l~~~l~~~--~~tviivSHd~~~l~~~~d~i~~l~-----~g~l~~~~g~~~~~ 628 (692)
|||+.+|+||||||||++||+.++..+.+.|.++ +.|||+||||++++..+||++++|+ +|+++. .|+-.++
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~-~~~~~~~ 241 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVE-FGVTTQI 241 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEE-eCCHHHH
Confidence 9999999999999999999999999999999876 3599999999999999999999998 488875 4666555
Q ss_pred H
Q 005532 629 L 629 (692)
Q Consensus 629 ~ 629 (692)
.
T Consensus 242 ~ 242 (259)
T PRK14260 242 F 242 (259)
T ss_pred h
Confidence 3
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 692 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-22 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 1e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 7e-21 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-07 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 7e-21 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-07 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-15 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-15 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-15 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 1e-14 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 1e-14 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-14 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-14 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-14 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-14 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 4e-14 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-14 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-14 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 5e-14 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-14 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 6e-14 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 9e-14 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-13 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-13 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-13 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-13 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 4e-13 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-13 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-12 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-12 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-12 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 4e-12 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-12 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 8e-12 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-11 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-11 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-11 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-11 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 5e-11 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 6e-11 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 7e-11 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 9e-11 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 3e-10 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-10 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-10 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 6e-10 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-09 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-09 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-09 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-09 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 2e-09 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-09 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 4e-09 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 5e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 5e-09 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 5e-09 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-09 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-09 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 7e-09 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 9e-09 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-09 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-09 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-08 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 1e-08 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 1e-08 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 1e-08 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-08 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 2e-08 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-08 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 2e-08 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 2e-08 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 3e-08 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 5e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-08 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-08 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 8e-08 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 8e-08 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 9e-08 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-07 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-07 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-07 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 5e-07 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 5e-07 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-06 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 3e-06 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 5e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 7e-06 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-05 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 7e-05 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 692 | |||
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 3e-86 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-83 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 5e-53 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-46 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 2e-35 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 7e-70 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-31 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 3e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-59 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 1e-56 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-28 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 5e-34 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 2e-28 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 7e-33 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 9e-26 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-30 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 8e-20 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-28 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 3e-20 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 1e-27 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 2e-20 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-27 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-22 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-27 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-15 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-26 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 5e-16 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-18 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-16 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 8e-09 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-17 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-13 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 5e-17 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-14 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 6e-17 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-16 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-12 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 8e-14 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-16 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-09 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-16 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 8e-15 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-15 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-12 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 1e-15 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 5e-12 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 2e-15 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 7e-07 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-12 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 7e-15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 5e-15 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 7e-15 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 9e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-14 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 8e-15 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-08 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-15 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 9e-13 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 1e-14 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 7e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-14 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 6e-13 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-14 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-11 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-14 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 3e-08 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-14 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-08 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 1e-13 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-07 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 2e-13 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 7e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 2e-13 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 5e-07 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-13 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-13 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-13 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-13 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 6e-12 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-12 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-12 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-04 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 7e-12 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 6e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-11 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 7e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 2e-10 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-09 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 7e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 8e-09 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 1e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 2e-08 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 6e-07 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 9e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 3e-05 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 2e-05 |
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 3e-86
Identities = 122/594 (20%), Positives = 225/594 (37%), Gaps = 115/594 (19%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+ Y + VK G VG+VG NG GKTT ++I+AGQ P+ + N
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEM------EIAGKLERVQKALESAVDDMDLMG 214
+ AF E + R E K + + GK+ + K +D +G
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK-------VDEVG 207
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKI 273
+ + L+ + + LD ++ +L SG ++ R+++
Sbjct: 208 KFEEVVKELELE------NVLDRELHQL-------------------SGGELQRVAIAAA 242
Query: 274 LLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
LL+ DEP+++LD+ + + L + ++++ HD A LD L I
Sbjct: 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH--- 299
Query: 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390
V G Y + K T++ IN G
Sbjct: 300 --VVYGEPGVYGIFSKPKG-------------------TRNGINEFLQG----------- 327
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
L++E +P++ + K+ ++V L Y L I +G
Sbjct: 328 ---YLKDENVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKDYGSFKL-EVEPGEIRKG 382
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E I+GPNG GK+T +K++ G+E+P G+V + Q + + TV E
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY-----KPQYIKAEYEGTVYEL 437
Query: 511 VAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLL 565
+++ + ++ LG D+ DR V LSGGE R+A +++ + +
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGI----IDLYDRNVEDLSGGELQRVAIAATLLRDADIY 493
Query: 566 VLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG------ 615
+LDEP+ +LD+ + + + + + T + V HD + + +R++ +G
Sbjct: 494 LLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553
Query: 616 --SNLQDYAGDYNYYLEKNLDAREKELEREAELEERAPKI-KAKSKMSKAEKEA 666
N +L ++ + + + P+ K S + +K
Sbjct: 554 RALPPMGMREGMNRFL-ASVGITFRR-----DPDSGRPRANKEGSVKDREQKAR 601
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 282 bits (722), Expect = 3e-83
Identities = 102/546 (18%), Positives = 189/546 (34%), Gaps = 97/546 (17%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ S +Y +L +K+ + G+ G NG GK+T +R IA +
Sbjct: 433 GEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG---- 488
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + ++ + + + + L+ V ++
Sbjct: 489 FPTQEECRTVYVEHDID-------------GTHSDTSV---LDFVFESGVGT-------- 524
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
+ + E GFT + +++ S GW+M+++L + +
Sbjct: 525 ---------------------KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
L++ D+LLLDEPTNHLD + WL YL + + ISHD FLD +C I+ E
Sbjct: 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
R Y+GN++++V + + E +L
Sbjct: 624 RKYKGNFTEFVKKCP------------AAKAYE-----------------------ELSN 648
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEK 452
E + +P + +K + +++V + N+EF Y + N +
Sbjct: 649 TDLEFKFPEPGYLEGVKTK-------QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSR 701
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLET 510
A+IGPNG GKSTL+ ++ G P GEV N Y +Q+ ++ LDKT E
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 511 VAEAAEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ + + + + N K+ + G + +T
Sbjct: 761 IQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECS 820
Query: 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629
+I K + I ++V V + + +
Sbjct: 821 FLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI 880
Query: 630 EKNLDA 635
E++
Sbjct: 881 EEHCSM 886
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 196 bits (500), Expect = 5e-53
Identities = 79/314 (25%), Positives = 135/314 (42%), Gaps = 16/314 (5%)
Query: 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
+ + + ++ K + + Y ++L N+
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKILLNKTQ 455
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
L ++R + I GPNGCGKSTL++ I + G E + Y E + D
Sbjct: 456 LRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTV--YVEH-DIDGTHSD 510
Query: 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTL 564
+VL+ V E+ + + IK L F +M+ +S LSGG K +LA + +++ + +
Sbjct: 511 TSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADI 569
Query: 565 LVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGD 624
L+LDEPTNHLD + L ++ T IT+SHD F+ + ++ +G L+ Y G+
Sbjct: 570 LLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGN 629
Query: 625 YNYYLEKNLDAREKELEREAELEERAP----------KIKAKSKMSKAEKEARKKQKMQA 674
+ +++K A+ E +LE + P K KA K++ E + K Q
Sbjct: 630 FTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQI 689
Query: 675 FQAAKQKSKGSKNA 688
Q S S+ A
Sbjct: 690 TDINFQCSLSSRIA 703
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 2e-46
Identities = 59/315 (18%), Positives = 118/315 (37%), Gaps = 70/315 (22%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
VK+ N+ Y G + + D+ ++ ++ ++G NGAGK+T + ++ G+ P SG V
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 156 KAKSNMKIAFLSQE----FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
N +IA++ Q E + +T E F+ + ++ E+ + M+
Sbjct: 732 TH-ENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMN 790
Query: 212 LMGRL-------------------------------------------------LDEFDL 222
+ ++ + +L
Sbjct: 791 KIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGEL 850
Query: 223 LQRKAQAVN-LDTLDAKVSKLMPEL------------GFTADDG-DRLVASFSSGWQMRM 268
++ ++ V +D +A S L G + + S G ++++
Sbjct: 851 VESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKL 910
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
L Q P L++LDEPTN+LD D++ L L + + ++II+H F L ++
Sbjct: 911 VLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWA 970
Query: 329 TEMGVSRTYEGNYSQ 343
+ G N+
Sbjct: 971 VKDGRMTPSGHNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 2e-35
Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 12/236 (5%)
Query: 392 LERLQEEEQIEKPFQ-RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
E +Q Q + + + + E + + + R
Sbjct: 758 SEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E + ++G N KS +M ++ + ++ ++ +
Sbjct: 818 ECSFLLGENIGMKSERWVPMMSVDNAW----------IPRGELVESHSKMVAEVDMKEAL 867
Query: 511 VAEAAEDWRIDDIKGLLGRCNFKAD-MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569
+ +I+ + + ++ LSGG+K +L + L+VLDE
Sbjct: 868 ASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDE 927
Query: 570 PTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDY 625
PTN+LD S L +A+ E++G VI ++H F K + V VK + ++
Sbjct: 928 PTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 7e-70
Identities = 112/591 (18%), Positives = 218/591 (36%), Gaps = 103/591 (17%)
Query: 101 ENISKSYKGVTVLKDVTWEV-KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ Y V K K +G++G NG GKTT L+I+AG+ P+ G+
Sbjct: 3 GEVIHRY-KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
++ + E+ +E S + + +E K L+ V +L +
Sbjct: 62 KDEVLKRFRGKEIYN---YFKELYSNELKIVHKIQYVEYASKFLKGTV------NEILTK 112
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
D +K + L + L ++ S G R+ + LL++ D
Sbjct: 113 IDERGKKDEVKELLNMT----NLW----------NKDANILSGGGLQRLLVAASLLREAD 158
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
+ + D+P+++LD+ + + ++ ++++ HD LD L I S
Sbjct: 159 VYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS--V 216
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQE 397
G S+ + + + K + R + L+ + +
Sbjct: 217 YGRVSKSYAARVG--INNF------------LKGYLPAENMKI---RPDEIKFMLKEVSD 259
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
+ + + + + D L N + GE I+G
Sbjct: 260 LDLSKDLKTKMK-----------------WTKIIKKLGDFQLVVD-NGEAKEGEIIGILG 301
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+T ++++G G V + + +Y Q + D TV + + A++D
Sbjct: 302 PNGIGKTTFARILVGEITADEGSVTPEKQIL--SYKPQR--IFPNYDGTVQQYLENASKD 357
Query: 518 ------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
W +++ L +L+ V+ LSGGE +L + K + L VLD+P+
Sbjct: 358 ALSTSSWFFEEVTKRLNL----HRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPS 413
Query: 572 NHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG--------SNLQ 619
++LD+ + + ++ E K + HD I +R++ KG ++
Sbjct: 414 SYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPV 473
Query: 620 DYAGDYNYYLEKNLDA---REKELEREAELEERAPKI-KAKSKMSKAEKEA 666
N +L + L+ R+ E R P++ K S + + +KE
Sbjct: 474 TLKTGMNEFL-RELEVTFRRDAETGR--------PRVNKIGSYLDRVQKER 515
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-31
Identities = 51/258 (19%), Positives = 107/258 (41%), Gaps = 39/258 (15%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNVLPNY----------- 492
T + ++G NG GK+T+LK++ G P G+ +G+ VL +
Sbjct: 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKE 80
Query: 493 -----------FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKV 541
+ + + L TV E + + E + D++K LL ++ ++
Sbjct: 81 LYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLN----MTNLWNKDA 136
Query: 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHD 599
++LSGG RL +++ + + + D+P+++LD+ + + +AI E VI V HD
Sbjct: 137 NILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHD 196
Query: 600 RYFVKQIVNRVVEVK------GSNLQDYAG--DYNYYLEKNLDAREKELEREAELEERAP 651
+ + + + + G + YA N +L+ L A ++ R E++
Sbjct: 197 LIVLDYLTDLIHIIYGESSVYGRVSKSYAARVGINNFLKGYLPAENMKI-RPDEIKFMLK 255
Query: 652 KIKAKSKMSKAEKEARKK 669
++ + + +
Sbjct: 256 EVSDLDLSKDLKTKMKWT 273
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-28
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 50/233 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K I K L E K+GE +G++G NG GKTT RI+ G+ D G+V K
Sbjct: 271 KWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK 329
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ Q + TV++ +A K+ + +
Sbjct: 330 --QILSYKPQRIFPNYDGTVQQYLENASKDALS----------------TSSWFFEEVTK 371
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+L +L+ + V S G ++ + L ++
Sbjct: 372 RLNL-----------------HRLL----------ESNVNDLSGGELQKLYIAATLAKEA 404
Query: 279 DLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DL +LD+P+++LD++ + ++ ++ II HD + D + +I+
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 207 bits (530), Expect = 3e-59
Identities = 107/545 (19%), Positives = 203/545 (37%), Gaps = 99/545 (18%)
Query: 90 GASSISSGVKLE-NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
G S +LE + Y + VK+G VG+VG NG GK+T ++I+AGQ
Sbjct: 13 GLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA-FKEEM-----EIAGKLERVQKA 202
P+ + + AF E + + ++ + K + + +
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQ-NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI--EL 129
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L+ D+ + ++ +L +R + S
Sbjct: 130 LK-KADETGKLEEVVKALELENVL---------------------------EREIQHLSG 161
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE---WLEGYLGKQDVPMVIISHDRAFL 319
G R+++ LL++ DEP+++LD+ L ++ ++++ HD A L
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221
Query: 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG 379
D L I G Y + K T++ IN
Sbjct: 222 DYLSDIIHVVYGE-----PGVYGIFSQPKG-------------------TRNGINEF--- 254
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL 439
L ++E + + ++VT L Y L
Sbjct: 255 ------------LRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRL 302
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
I++GE I+GPNG GK+T +K++ G+E+P G++ + Q
Sbjct: 303 -EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY-----KPQYI 356
Query: 500 ALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAF 554
D + TV E +++ + ++ LG D+ DR+V+ LSGGE R+A
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI----IDLYDREVNELSGGELQRVAI 412
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRV 610
+++ + + +LDEP+ +LD+ + + + + + T + V HD + + +R+
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 472
Query: 611 VEVKG 615
+ +G
Sbjct: 473 MVFEG 477
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 41/284 (14%)
Query: 423 SVVTIKNLE----FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR- 477
++ LE Y ++ G I+GPNG GKST +K++ G P
Sbjct: 16 PRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNL 75
Query: 478 GGEVLLGEHNV-------LPNYFE-----------QNQAEALD---LDKTVLETVAEAAE 516
G+ + + L NYFE + Q L + V+E + +A E
Sbjct: 76 CGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE 135
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
+++++ L ++L+R++ LSGGE R+A +++ +T DEP+++LDI
Sbjct: 136 TGKLEEVVKALEL----ENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDI 191
Query: 577 PSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVVEVKG--------SNLQDYAGDY 625
+ AI +V+ V HD + + + + V G S +
Sbjct: 192 RQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGI 251
Query: 626 NYYLEKNLDAREKELEREAELEERAPKIKAKSKMSKAEKEARKK 669
N +L L + + + + K
Sbjct: 252 NEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVK 295
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 201 bits (514), Expect = 1e-56
Identities = 96/540 (17%), Positives = 190/540 (35%), Gaps = 102/540 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+++ Y + + G+ +GLVG NG GK+T L+I+AG+++P+ G
Sbjct: 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 161 MKIA--FLSQEFEVSMSRTVREEFMSAFKEEM----------EIAGKLERVQKALESAVD 208
+I F E + ++ + ++ + K + + E ++ +E + +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE 200
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
D+ R + L ++ R + S G R
Sbjct: 201 DVK---RYIKILQL-----------------ENVL----------KRDIEKLSGGELQRF 230
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
++G +Q+ D+ + DEP+++LD+ L ++ + HD + LD L
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290
Query: 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ-TKDLINRLGAGANSGR 384
+ ++ + + I I R
Sbjct: 291 VC-----------------IIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRF---R 330
Query: 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
+ + ++ E+ Q + + +G +V
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVE------------------E 372
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
E ++G NG GK+TL+KL+ G KP G+ + N + Q A
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-----NVSMKPQKIAPKFP 427
Query: 505 KTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV 559
TV + + D+ L D++D++V LSGGE R+A +
Sbjct: 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRI----DDIIDQEVQHLSGGELQRVAIVLALG 483
Query: 560 KPSTLLVLDEPTNHLDIPSK----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
P+ + ++DEP+ +LD + +++ I K T V HD + ++V+ +G
Sbjct: 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEG 543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-28
Identities = 54/290 (18%), Positives = 98/290 (33%), Gaps = 43/290 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ Y T G+ ++G NG GKST LK++ G +KP G
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 483 LGEHNVL---------------------------PNYFEQNQAEALDLDKTVLETVAEAA 515
P Y + + V E +
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM 195
Query: 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
E +D+K + + ++L R + LSGGE R A V+ + + + DEP+++LD
Sbjct: 196 EK-SPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLD 253
Query: 576 IPSKEMLEEAISEYK---GTVITVSHDRYFVKQIVNRVV------EVKGSNLQDYAG--D 624
+ + + I VI V HD + + + V V G +
Sbjct: 254 VKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVTLPASVREG 313
Query: 625 YNYYLEKNLDA---REKELEREAELEERAPKIKAKSKMSKAEKEARKKQK 671
N +L+ ++ A R + + + + ++ S + KK +
Sbjct: 314 INIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQ 363
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 5e-34
Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 28/215 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-L 482
++ + + + + + + + I +G+K + G NG GK+TLL ++ E G V L
Sbjct: 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 483 LGE--HNVLPNYFE---------QNQAEALDLDKTVLETVAEAAED----WRI---DDI- 523
G+ V + + E + V++ V A ++ +
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 524 --KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
LL + + + LS GEK R+ + ++ +L+LDEP LD ++E
Sbjct: 141 EAHQLLKLVGM-SAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARES 199
Query: 582 LEEAISEYKG-----TVITVSHDRYFVKQIVNRVV 611
L + +I V+H + ++++
Sbjct: 200 LLSILDSLSDSYPTLAMIYVTHFIEEITANFSKIL 234
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-28
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 55/249 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+ I + +G T+LK ++W++ KG+K L G+NGAGKTT L I+ E SG V
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL 203
K + I F+S V + +S + G + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA---FKSIGVYQDIDDE- 137
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ +LL + + + + S+G
Sbjct: 138 -----IRNEAHQLLKLVGMSAKA---------------------------QQYIGYLSTG 165
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAF 318
+ R+ + + L+ P +L+LDEP LD E L L + M+ ++H
Sbjct: 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225
Query: 319 LDQLCTKIV 327
+ +KI+
Sbjct: 226 ITANFSKIL 234
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 7e-33
Identities = 50/212 (23%), Positives = 98/212 (46%), Gaps = 29/212 (13%)
Query: 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++NL F Y+ + LF + N + +G+ A++G NGCGKSTLL L++G+ +P G++
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 482 -LLGEHNVLPNYFEQNQAEALDLDKTVLETVA------------EAAEDWRI-DDIKGLL 527
+ +P Q + +VL+ V + D+++ L
Sbjct: 63 EVYQSIGFVP------QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK----EMLE 583
+ R+ + LSGG++ + + + L++LDEPT+ LD+ ++ +L
Sbjct: 117 NLTHLA----KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLI 172
Query: 584 EAISEYKGTVITVSHDRYFVKQIVNRVVEVKG 615
+ TV+ +H V I N+ + +
Sbjct: 173 DLAQSQNMTVVFTTHQPNQVVAIANKTLLLNK 204
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 9e-26
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 48/228 (21%)
Query: 95 SSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + +EN+ Y+ + + + +++ KG+ + ++G NG GK+T L ++ G P G
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + I F+ Q F + +V D+ LM
Sbjct: 62 IEVYQ---SIGFVPQFFSSPFAYSVL-----------------------------DIVLM 89
Query: 214 GRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
GR ++ F + D + + L R S S G + + +
Sbjct: 90 GRSTHINTFAKPKSH------D--YQVAMQALDYLN-LTHLAKREFTSLSGGQRQLILIA 140
Query: 272 KILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + + L+LLDEPT+ LDL + L Q++ +V +H
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 119 bits (302), Expect = 1e-30
Identities = 41/191 (21%), Positives = 64/191 (33%), Gaps = 37/191 (19%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------- 487
+ + + GE ++GPNG GKSTLL + G+ G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATK 70
Query: 488 ------VLPNYFEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADMLD 538
L Q + V + + + + G D L
Sbjct: 71 LALHRAYLS------QQQTPPFATPVWHYLTLHQHDKTRTEL--LNDVAGALAL-DDKLG 121
Query: 539 RKVSLLSGGEKARLAF-------CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
R + LSGGE R+ LL+LDEP N LD+ + L++ +S
Sbjct: 122 RSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ 181
Query: 591 --GTVITVSHD 599
++ SHD
Sbjct: 182 QGLAIVMSSHD 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 8e-20
Identities = 54/230 (23%), Positives = 80/230 (34%), Gaps = 72/230 (31%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM---- 161
T L ++ EV+ GE + LVG NGAGK+T L +AG G++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATK 70
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL-- 216
A+LSQ+ + V + + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWH-------------------------YL----TLHQHDK 101
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+LL A A+ LD R S G R+ L ++LQ
Sbjct: 102 TRT-ELLNDVAGALALDDK-----------------LGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 277 D-------PDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
LLLLDEP N LD+ + L L +Q + +V+ SHD
Sbjct: 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LSQQGLAIVMSSHD 192
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 2e-28
Identities = 53/243 (21%), Positives = 95/243 (39%), Gaps = 17/243 (6%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + + NL + GEK I+GPNG GK+TLL+ I GL P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 480 EVLLGEHNV--LPNY----FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCN 531
+ + V + NY +A + + TV + V E D +L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIVYLYEELKGLDRDLFLEMLKALK 116
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
++L RK+ LS G+ + + ++ LDEP ++D + ++ I EY
Sbjct: 117 LGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK 176
Query: 592 TVITVSHDRYFVKQIVNRVVEV-KGSNLQDYAGDYNYYLEKNLDAREKELEREAELEERA 650
I V+H+ + G+ LQ ++ + ++ ++
Sbjct: 177 EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEGERNDALLVLDIMDKK 236
Query: 651 PKI 653
I
Sbjct: 237 VSI 239
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 3e-20
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 59/242 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+ + G L+++ EV GEKV ++G NG+GKTT LR I+G P SGN
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 154 VIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ ++ L + +E+ + TV + EE++ + + + L+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIV--YLYEELKGLDR-DLFLEMLK- 113
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+L +E R + S+G
Sbjct: 114 -------ALKLGEEI--------------------------------LRRKLYKLSAGQS 134
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
+ + L P+++ LDEP ++D + Y+ + ++++H+ L+
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEY 194
Query: 326 IV 327
Sbjct: 195 KA 196
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 66/249 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA-LES 205
+ + I++L +E + E + + +E
Sbjct: 76 GKNVVEEPHEVRK--LISYLPEEAGAYRNMQGI--------EYLRFVAGFYASSSSEIEE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
V+ + L ++ V+++S G
Sbjct: 126 MVER------ATEIAGLGEKI---------------------------KDRVSTYSKGMV 152
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
++ + + L+ +P L +LDEPT+ LD ++ ++ + +++ SH+
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK----QASQEGLTILVSSHNMLE 208
Query: 319 LDQLCTKIV 327
++ LC +I
Sbjct: 209 VEFLCDRIA 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 48/206 (23%), Positives = 86/206 (41%), Gaps = 19/206 (9%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V
Sbjct: 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 483 LGEHNVLPNYFE--QN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGR 529
+ NV+ E + + + +E + A + ++
Sbjct: 74 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 133
Query: 530 CNFKADMLDRKVSLLSGGEKARLAF-CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE 588
+ + +VS S G +L MV P L +LDEPT+ LD+ + + + + +
Sbjct: 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPR-LAILDEPTSGLDVLNAREVRKILKQ 191
Query: 589 YKG---TVITVSHDRYFVKQIVNRVV 611
T++ SH+ V+ + +R+
Sbjct: 192 ASQEGLTILVSSHNMLEVEFLCDRIA 217
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 109 bits (276), Expect = 1e-27
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 56/230 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-- 152
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G
Sbjct: 8 GSKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K K KI FL +E V +S ++ ++ L V K ++ +
Sbjct: 67 IYNGVPITKVKG--KIFFLPEEIIV-------PRKISV-EDYLKAVASLYGV-KVNKNEI 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
D L+ ++L K + + S G R
Sbjct: 116 MD------ALESVEVLDLK----------------------------KKLGELSQGTIRR 141
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L LL + ++ +LD+P +D D+ + + K+ ++I S
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 1e-22
Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 28/205 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY+ +L R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 9 SKLEIRDLSVGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 483 LGEHNV---------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD----IKGLLGR 529
+ LP + + +V + + A + + I L
Sbjct: 68 YNGVPITKVKGKIFFLP------EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 530 CNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY 589
L +K+ LS G R+ ++ + + VLD+P +D SK + ++I E
Sbjct: 122 VEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEI 179
Query: 590 ---KGTVITVSHDRYFVKQIVNRVV 611
KG VI S + +
Sbjct: 180 LKEKGIVIISSRE---ELSYCDVNE 201
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-27
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 45/221 (20%)
Query: 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ ++ L + Y D L N+ I+RGE TAI+G NG GKSTL + G+ KP G +
Sbjct: 7 ILKVEELNYNYSDGTHALKG-INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 482 LLGEHNVLPNYFEQNQAEALDLDK----------------TVLETVA-----------EA 514
L + + ++ + L + +V + V+ E
Sbjct: 66 LFDNKPI-----DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEI 120
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ R+D+ G + D+ LS G+K R+A +V +L+LDEPT L
Sbjct: 121 RK--RVDNALKRTGI----EHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 575 DIPSKEMLEEAI----SEYKGTVITVSHDRYFVKQIVNRVV 611
D + + + E T+I +HD V + V
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVF 215
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 51/259 (19%), Positives = 99/259 (38%), Gaps = 80/259 (30%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+K+E ++ +Y G LK + +K+GE ++G NG GK+T + G +P SG ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 156 ----KAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF--------KEEMEIA 193
S I L + + + S +V ++ +F ++E+
Sbjct: 68 DNKPIDYSRKGIMKLRE--SIGIVFQDPDNQLFSASVYQDV--SFGAVNMKLPEDEIR-- 121
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+RV AL+ ++ L
Sbjct: 122 ---KRVDNALK------------------------RTGIEHL-----------------K 137
Query: 254 DRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
D+ S G Q R+++ +L+ +P +L+LDEPT LD + ++ L + +
Sbjct: 138 DKPTHCLSFG-QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196
Query: 309 MVIISHDRAFLDQLCTKIV 327
++I +HD + C +
Sbjct: 197 IIIATHDIDIVPLYCDNVF 215
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-26
Identities = 60/221 (27%), Positives = 88/221 (39%), Gaps = 48/221 (21%)
Query: 425 VTIKNLEFGYEDRLLFNRA-----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + + +L I GE + G G GKSTLL+++ GL +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 480 EVLLGEHNVLPNYFE---------QN---Q-------------AEALDLDKTVLETVAEA 514
+VL +E Q Q + D+ + V +A
Sbjct: 63 DVLYDGERK--KGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKA 120
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNH 573
E +D DR LSGGEK R+A +V +P +L+LDEP
Sbjct: 121 MEFVGLDF-----------DSFKDRVPFFLSGGEKRRVAIASVIVHEPD-ILILDEPLVG 168
Query: 574 LDIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
LD K L + ++K TVI +SHD V V+RVV
Sbjct: 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVV 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 5e-16
Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 83/260 (31%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+++ N+S + T L++V+ + +GE + + G G+GK+T L+I+AG EP SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF-------KEEMEIAGK 195
+V+ K + + + + + V +E AF +
Sbjct: 63 DVLYDGERKKGYEIRR--NIGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPV---- 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
V+KA+E V LD K DR
Sbjct: 115 -PLVKKAME------------------------FVGLDFDSFK---------------DR 134
Query: 256 LVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDV 307
+ S G + R+++ +++ +PD+L+LDEP LD L +E
Sbjct: 135 VPFFLSGG-EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE----KWKTLGK 189
Query: 308 PMVIISHDRAFLDQLCTKIV 327
+++ISHD + ++V
Sbjct: 190 TVILISHDIETVINHVDRVV 209
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 1e-18
Identities = 51/203 (25%), Positives = 93/203 (45%), Gaps = 36/203 (17%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y ++ + NL ++ G+ A++G +GCGKST ++L+ L P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
+ ++ P F AE + ++ + +A ++ D
Sbjct: 448 SIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYD 507
Query: 523 -IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP 577
I L D V + LSGG+K R+A + +V+ +L+LDE T+ LD
Sbjct: 508 FIMKL-------PHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTE 560
Query: 578 SKEMLEEAISEY-KG-TVITVSH 598
S+ +++ A+ + +G T I ++H
Sbjct: 561 SEAVVQAALDKAREGRTTIVIAH 583
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 5e-16
Identities = 58/232 (25%), Positives = 101/232 (43%), Gaps = 50/232 (21%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V + F Y + +L +++G+ A++G +GCGKST+++L+ P G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 482 LLGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRI 520
L + + Q N A + E + AA++ I
Sbjct: 1091 FLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANI 1150
Query: 521 DD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
I L D + +V + LSGG+K R+A + +V+ +L+LDE T+ LD
Sbjct: 1151 HQFIDSL-------PDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALD 1203
Query: 576 IPSKEMLEEAISEY-KG-TVITVSH--------DRYFVKQIVN-RVVEVKGS 616
S+++++EA+ + +G T I ++H D V I N +V E G+
Sbjct: 1204 TESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV--IQNGKVKE-HGT 1252
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 54/265 (20%), Positives = 98/265 (36%), Gaps = 85/265 (32%)
Query: 58 SIAKAQSDVESLFS-----SSADEFENKKYSNKQSNTGASSISSGVKLENISKSY---KG 109
AKA + D + + + + V+ + +Y
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKP-------NMLEGNVQFSGVVFNYPTRPS 1045
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNV------IKAKSN 160
+ VL+ ++ EVKKG+ + LVG +G GK+T ++ E +P +G+V IK + N
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKST---VVQLLERFYDPMAGSVFLDGKEIK-QLN 1101
Query: 161 MK-----IAFLSQE---FEVSMSRTVRE------EFMSAFKEEMEIAGKLERVQKALESA 206
++ + +SQE F ++ E EE+ A
Sbjct: 1102 VQWLRAQLGIVSQEPILF----DCSIAENIAYGDNSRVVSYEEIVRA------------- 1144
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
A+ N+ + L P+ + GD+ S G +
Sbjct: 1145 --------------------AKEANIHQF---IDSL-PD-KYNTRVGDKGT-QLSGGQKQ 1178
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L++ P +LLLDE T+ LD
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALD 1203
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 8e-09
Identities = 66/260 (25%), Positives = 114/260 (43%), Gaps = 77/260 (29%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGA--SSISSGVKLENISKSY---KGVTV 112
+ A A+ +F +NK + S +G +I ++ +NI SY K V +
Sbjct: 350 AFANARGAAYEVFKI----IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK---- 162
LK + +VK G+ V LVG +G GK+T ++++ +P G V I+ N++
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR-TINVRYLRE 464
Query: 163 -IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LERVQKALESAVDDMDLM 213
I +SQE F + T+ E I G+ ++ ++KA++ A
Sbjct: 465 IIGVVSQEPVLF----ATTIAE----------NIRYGREDVTMDEIEKAVKEA------- 503
Query: 214 GRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLG 271
+F L + DTL +G + G +L SG Q R+++
Sbjct: 504 --NAYDFIMKLPHQ-----FDTL----------VG---ERGAQL-----SGGQKQRIAIA 538
Query: 272 KILLQDPDLLLLDEPTNHLD 291
+ L+++P +LLLDE T+ LD
Sbjct: 539 RALVRNPKILLLDEATSALD 558
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 2e-17
Identities = 57/204 (27%), Positives = 92/204 (45%), Gaps = 45/204 (22%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNV--LP-----------NY--F-----EQNQAEALDLDKT-VLETVAEAAEDWRIDD 522
+V L NY F ++N + + K + V + A D +I+
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK-- 579
+LDR LSGGE+ R+A + +V P LL LDEP + LD +
Sbjct: 119 ------------HLLDRNPLTLSGGEQQRVALARALVTNPKILL-LDEPLSALD--PRTQ 163
Query: 580 -EMLEE--AISEYKG-TVITVSHD 599
E + + TV+ ++HD
Sbjct: 164 ENAREMLSVLHKKNKLTVLHITHD 187
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++E++S+ + L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKW-KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 5e-17
Identities = 52/213 (24%), Positives = 90/213 (42%), Gaps = 54/213 (25%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 483 LGEHNV-------LP-----------NY-------FEQNQAEALDLDKT----VLETVAE 513
+ V +P + +N A L K + + V E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNH 573
A+ I +L+ LSG ++ R+A + +VK +LL+LDEP ++
Sbjct: 124 VAKILDIH-------------HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 574 LDIPSK---EMLEEAIS----EYKGTVITVSHD 599
LD ++ + T++ VSHD
Sbjct: 171 LD--ARMRDSARAL-VKEVQSRLGVTLLVVSHD 200
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 71/219 (32%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 VI---KAKSNMKIAFLS-QEFEVSM---------SRTVREEFMSAF--------KEEMEI 192
+ + ++ + ++ ++ M + T E + AF KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN-I-AFPLTNMKMSKEEIR- 118
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+RV++ + +LD +L + +
Sbjct: 119 ----KRVEEVAK-----------ILDIHHVLNHFPREL---------------------- 141
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S Q R++L + L++DP LLLLDEP ++LD
Sbjct: 142 --------SGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 6e-17
Identities = 58/180 (32%), Positives = 87/180 (48%), Gaps = 28/180 (15%)
Query: 441 NRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY----- 492
R N+ E G + ++GP G GKS L+LI G+ KP GEV L ++ LP
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 493 --FEQNQAEALDLDKTVLETVA------EAAE-DWRIDDIKGLLGRCNFKADMLDRKVSL 543
Q AL +V +A E E D R+ ++ LG A +LDRK +
Sbjct: 74 FVP---QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKPAR 126
Query: 544 LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIP-SKEMLEE--AISEYKG-TVITVSHD 599
LSGGE+ R+A + +V LL+LDEP + +D+ ++EE + ++ V+HD
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K + D + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR 56
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 2e-16
Identities = 62/207 (29%), Positives = 97/207 (46%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + + N NL I+ GE A++GP+G GKSTLL I G+ KP G++
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E +V LP N+ +N A L+L K + + V E A+ I
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
D +L+R LSGG++ R+A + +V +P LL LDEP ++LD +
Sbjct: 124 D-------------KLLNRYPWQLSGGQQQRVAIARALVKEPEVLL-LDEPLSNLD--AL 167
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
E+ E + E T + V+HD
Sbjct: 168 LRLEVRAE-LKRLQKELGITTVYVTHD 193
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 54/207 (26%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--- 152
+KLENI K + T L ++ ++K GE + L+G +G+GK+T L IAG +P SG
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 153 ------NVIKAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K + + + Q + + M TV + + AF E+ A + E +K E
Sbjct: 62 FDEKDVTELPPK-DRNVGLVFQNWALYPHM--TVYKN-I-AFPLELRKAPREEIDKKVRE 116
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A ++L LL R + S G
Sbjct: 117 VA--------KMLHIDKLLNRYPWQL------------------------------SGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + L+++P++LLLDEP ++LD
Sbjct: 139 QQRVAIARALVKEPEVLLLDEPLSNLD 165
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 61/253 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
Query: 155 --IKAKSNMKIAFL--------SQEFEVSMSRTVREEFMSAFKEEME--IAGKLERVQKA 202
I K ++ Q + M TV E + E + +
Sbjct: 69 KDITNKEPAELYHYGIVRTFQTPQPLK-EM--TVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + + ++L+ L DR S
Sbjct: 126 KEEEMVEKAF--KILEFLKLSHLY---------------------------DRKAGELSG 156
Query: 263 GWQMRMSLGKILLQDPDLLLLDEP--------TNHLDLDTIEWLEGYLGKQDVPMVIISH 314
G + +G+ L+ +P ++++DEP + + + + L+ + + +II H
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLELK----AKGITFLIIEH 211
Query: 315 DRAFLDQLCTKIV 327
+ +
Sbjct: 212 RLDIVLNYIDHLY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 8e-14
Identities = 41/207 (19%), Positives = 74/207 (35%), Gaps = 42/207 (20%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ ++++ +G+ T IIGPNG GKSTL+ +I G K G V ++
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83
Query: 493 ----FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK--------------- 533
F Q ++ TVLE + + L +
Sbjct: 84 IVRTF-QTPQPLKEM--TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEF 140
Query: 534 ---ADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT---NHLDIPSKEMLE--E 584
+ + DRK LSGG+ + + M P ++V+DEP + ++
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPK-MIVMDEPIAGVAPGL--AHDIFNHVL 197
Query: 585 AISEYKGTVITVSHDRYFVKQIVNRVV 611
+ T + + H V ++ +
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLY 224
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 3e-16
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 37/204 (18%)
Query: 424 VVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LGEHNV----LPNYFEQ-----------------NQAEALDLDKTVLETVAEAAEDWRID 521
+ + L N+ Q N L+ D T E + + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYT-DEDLWQVLDLAFAR 119
Query: 522 D-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI 576
++ + D L+ +V +SGG++ RLA + ++ +L+LDE T LD
Sbjct: 120 SFVENM-------PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172
Query: 577 PSKEMLEEAISEY-KG-TVITVSH 598
S+ M+++A+ KG T + ++H
Sbjct: 173 ESESMVQKALDSLMKGRTTLVIAH 196
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-09
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 155 -------IKAKS-NMKIAFLSQEFEVSMSRTVRE-----EFMSAFKEEMEIAGKLERVQK 201
I ++ +I F+SQ+ M+ T+RE E++ L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQD-SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF--- 117
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
F V + P+ + G+R V S
Sbjct: 118 ---------------ARSF------------------VENM-PD-QLNTEVGERGV-KIS 141
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + L++P +L+LDE T LD ++
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 9e-16
Identities = 59/213 (27%), Positives = 93/213 (43%), Gaps = 53/213 (24%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + I +L +++ + N +L+++ GE IIG +GCGK+TLL+ + G E+P GE+
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 483 LGEHNV------LP-----------NY--F-----EQNQAEALDLDKTVLETVAEAAEDW 518
L + LP F +N A L K A E
Sbjct: 63 LSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-----GRTAQERQ 117
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK-----AR-LAFCKFMVKPSTLLVLDEPTN 572
RI+ + L G +++ R LSGG++ AR LA P +L LDEP +
Sbjct: 118 RIEAMLELTGI----SELAGRYPHELSGGQQQRAALARALA-----PDPELIL-LDEPFS 167
Query: 573 HLDIPSK---EMLEE--AISEYKG-TVITVSHD 599
LD + ++ E+ A G + + VSHD
Sbjct: 168 ALD--EQLRRQIREDMIAALRANGKSAVFVSHD 198
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 8e-15
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ + + ++SKS++ VL D++ + GE + ++G +G GKTT LR +AG E+PDSG +
Sbjct: 2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 56/207 (27%), Positives = 92/207 (44%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + NL+ + + + ++ GE A++GP+GCGK+T L ++ G+ KP GE+
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ V +P NY +N A L + V + V E A
Sbjct: 64 DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
+ ++LDRK + LSGG++ R+A + +V +P LL DEP ++LD +
Sbjct: 120 --KLLI-------DNLLDRKPTQLSGGQQQRVALARALVKQPKVLL-FDEPLSNLD--AN 167
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
M E I E T + V+HD
Sbjct: 168 LRMIMRAE-IKHLQQELGITSVYVTHD 193
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 3e-12
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++ N+ K + V + V++EVK GE V L+G +G GKTT L ++AG +P SG +
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 78.0 bits (193), Expect = 1e-15
Identities = 64/207 (30%), Positives = 103/207 (49%), Gaps = 49/207 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ +V LP +Y +N A L + K + + V AAE
Sbjct: 72 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---- 127
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK 579
+ + ++L+R + LSGG++ R+A + +V +P LL +DEP ++LD +K
Sbjct: 128 --LLQI-------EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLL-MDEPLSNLD--AK 175
Query: 580 ---EMLEEAIS----EYKGTVITVSHD 599
M E I + K T I V+HD
Sbjct: 176 LRVAMRAE-IKKLQQKLKVTTIYVTHD 201
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 5e-12
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 2e-15
Identities = 54/270 (20%), Positives = 101/270 (37%), Gaps = 74/270 (27%)
Query: 373 INRLGAGANSGRAS--SAEKKLERLQEEEQIE-----KPFQRKQMKIRFPERGRSGRSVV 425
+ G E + L+EE +++ P + ++ +I F
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEF----------- 56
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+N+ F Y R + T+ G+ A++GP+G GKST+L+L+ G + +
Sbjct: 57 --ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 485 EHNVLPNYFEQNQAEALDLD-----------KTVL------------------ETVAEAA 515
++ + TVL + V AA
Sbjct: 115 GQDI----------SQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAA 164
Query: 516 EDWRIDD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEP 570
+ I D I + +V LSGGEK R+A + ++K +++LDE
Sbjct: 165 QAAGIHDAIMAF-------PEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEA 217
Query: 571 TNHLDIPSKEMLEEAISEY-KG-TVITVSH 598
T+ LD ++ ++ ++++ T I V+H
Sbjct: 218 TSALDTSNERAIQASLAKVCANRTTIVVAH 247
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 7e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN+ SY G L+DV++ V G+ + LVG +GAGK+T LR++ + SG +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 3e-15
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 61/216 (28%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ + +I + Q F + SRTV +E+ K E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP----LELDNTPKDEV 140
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L + D+ S L
Sbjct: 141 KRRVTE-----------LLSLVGLGDKH---------DSYPSNL---------------- 164
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+++ + L +P +LL D+ T+ LD T
Sbjct: 165 --SGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 54/236 (22%), Positives = 91/236 (38%), Gaps = 60/236 (25%)
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
+ ++ + N+ + +A +L + G+ +IG +G GKSTL++ + L
Sbjct: 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDL---------------DKTVLETVAEAAEDW 518
E+P G VL+ + +++E +TV VA E
Sbjct: 78 ERPTEGSVLVDGQELT----TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD 133
Query: 519 RID------------DIKGLLGRCNFKADMLDRKVSLLSGGEK-----AR-LAFCKFMVK 560
+ GL D D S LSGG+K AR LA
Sbjct: 134 NTPKDEVKRRVTELLSLVGL-------GDKHDSYPSNLSGGQKQRVAIARALA-----SN 181
Query: 561 PSTLLVLDEPTNHLDIPSK-----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVV 611
P LL D+ T+ LD P+ E+L++ T++ ++H+ VK+I + V
Sbjct: 182 PKVLLC-DQATSALD-PATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVA 235
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 76.9 bits (190), Expect = 3e-15
Identities = 54/214 (25%), Positives = 89/214 (41%), Gaps = 33/214 (15%)
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNRANLTIERGEKTAIIGPNGCGKSTLLK 468
M+ ++ +E Y + I GE ++GP+G GK+T+L+
Sbjct: 1 MRGHHHHHHHGSMTI-EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILR 59
Query: 469 LIMGLEKPRGGEVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA------- 512
LI GLE+P G+V +G V LP F Q AL TV + V+
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF---QNYALFQHMTVYDNVSFGLREKR 116
Query: 513 --EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDE 569
+ D R+ ++ + +R LSGG++ R+A + + +P LL DE
Sbjct: 117 VPKDEMDARVRELLRFMRL----ESYANRFPHELSGGQQQRVALARALAPRPQVLL-FDE 171
Query: 570 PTNHLDIP-SKEMLEE--AISEYKG-TVITVSHD 599
P +D +E+ + + G T + V+HD
Sbjct: 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 7e-15
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 85 KQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII 143
+ + S ++ + K Y G ++ V++++++GE VGL+G +G+GKTT LR+I
Sbjct: 2 RGHHHHHHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI 61
Query: 144 AGQEEPDSGNVI 155
AG E P G+V
Sbjct: 62 AGLERPTKGDVW 73
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 74.4 bits (184), Expect = 5e-15
Identities = 53/195 (27%), Positives = 104/195 (53%), Gaps = 21/195 (10%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y+ ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHN---VLPNYFEQN----QAEALDLDKTVLETVAEAAEDWRIDDIKG---LLGRCNF 532
+ H+ PN+ + + + L++++++ ++ A ++ + L G +F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 533 KADM---LDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+++ + V + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 586 ISEY-KG-TVITVSH 598
+ + KG TVI ++H
Sbjct: 188 MHKICKGRTVIIIAH 202
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 56.3 bits (137), Expect = 6e-09
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 64/214 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LE 197
++ + Q+ +R++ + I+ +E
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLL----NRSIID----------NISLANPGMSVE 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+V A + A +F +S+L E G+ G++
Sbjct: 114 KVIYAAKLAG---------AHDF------------------ISEL-RE-GYNTIVGEQGA 144
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L+ +P +L+ DE T+ LD
Sbjct: 145 -GLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 7e-15
Identities = 56/201 (27%), Positives = 90/201 (44%), Gaps = 36/201 (17%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
NL I+ GE +I+GP+G GKST+L +I L+KP GEV + N + ++ +
Sbjct: 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT--NDLDDDELTKIRR 82
Query: 504 DK--------------TVLETV---------AEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
DK T LE V + + R L + + K
Sbjct: 83 DKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK 142
Query: 541 VSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLDIPSK------EMLEEAISEYKGTV 593
+ LSGG++ R+A + + P +L D+PT LD SK ++L++ E TV
Sbjct: 143 PNQLSGGQQQRVAIARALANNPPIILA-DQPTWALD--SKTGEKIMQLLKKLNEEDGKTV 199
Query: 594 ITVSHDRYFVKQIVNRVVEVK 614
+ V+HD V + R++ +K
Sbjct: 200 VVVTHDIN-VARFGERIIYLK 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 9e-09
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 70/247 (28%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG- 152
VKL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 153 ------NVIKAKS-------NMKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRL 256
R ++ALE L +L +R + P +L
Sbjct: 121 RRKRALE-----------CLKMAELEER-------------FANHKPNQL---------- 146
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPM 309
S G Q R+++ + L +P ++L D+PT LD + ++ L GK +
Sbjct: 147 ----SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT---V 199
Query: 310 VIISHDR 316
V+++HD
Sbjct: 200 VVVTHDI 206
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 77.6 bits (190), Expect = 8e-15
Identities = 90/693 (12%), Positives = 187/693 (26%), Gaps = 224/693 (32%)
Query: 1 MDVTTTTTNLR-SSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSI 59
MD T + S + F K + + ++ E I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILS------KEEIDHI 54
Query: 60 AKAQSDVES---LF-------SSSADEF----ENKKYS----------NKQSNTGASSIS 95
++ V LF +F Y + S I
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 96 SGVKLENISKSY--------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
+L N ++ + + L+ E++ + V + GV G+GKT + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLS 173
Query: 148 EP------------DSGNVIKAKSNMKI--AFLSQEFEVSMSRTVREEFMSAFKEEME-I 192
+ N ++ +++ L Q + + T R + S K + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSI 230
Query: 193 AGKLER--VQKALESA---VDDM-DLMGRLLDEFD------LLQRKAQAVNLDTLDAKVS 240
+L R K E+ + ++ + + + F+ L R Q D L A +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVT--DFLSAATT 286
Query: 241 KLMP----ELGFTADDGDRLVASFSSGWQMRMSLGK----ILLQDPDLL-----LLDEPT 287
+ + T D+ L+ + + +L +P L + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 288 NHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY-VL 346
D W ++ + +I + L+ L E R + + V
Sbjct: 342 ATWD----NWK--HVNCDKLTTII----ESSLNVL----EPAEY---RKM---FDRLSVF 381
Query: 347 EKAAWIESQYAA--WEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER-------LQE 397
+A I + + W + ++N+L + S EK+ + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM--VVVNKL------HKYSLVEKQPKESTISIPSIYL 433
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVT---IKNLEFGY---------------EDRLL 439
E +++ + + ++ + I Y E L
Sbjct: 434 ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 440 FNRANLT---IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496
F L +E+ K ++L + L+ + Y N
Sbjct: 493 FRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYK-------------PYICDN 537
Query: 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556
+ + ++ I
Sbjct: 538 ----------------DPKYERLVNAIL-------------------------------D 550
Query: 557 FMVKPSTLLVLDEPTNHLDI----PSKEMLEEA 585
F+ K L+ + T+ L I + + EEA
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEA 583
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.4 bits (187), Expect = 2e-14
Identities = 68/446 (15%), Positives = 125/446 (28%), Gaps = 138/446 (30%)
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLD---TIEWLEGYLGKQDVPMVIISHD-----R 316
M G+ Q D+L + E + D + + L K+++ +I+S D
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 317 AFLDQLCTKIVET-EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR 375
L +K E + V NY ++ + E Q
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYK--------FL------MSPIKTEQRQP------ 105
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQ--RKQM--KIRFPERGRSGRSVVTIKNLE 431
S ++ +RL + Q+ + R Q K+R + L
Sbjct: 106 ------SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR--------------QAL- 144
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL---LGE 485
E R N+ I+ G G GK+ + + ++ ++ L
Sbjct: 145 --LELR---PAKNVLID--------GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETV-AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
N E Q +D + RI I+ LL
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-------------AELRRLL 238
Query: 545 SGGEKARLAFCKFMVKPSTLLVLD-----EPTNHLDIPSKEML-------EEAISEYKGT 592
K + LLVL + N ++ K +L + +S T
Sbjct: 239 -----------KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 593 VITVSHDRY-F----VKQIVNRVVEVK-------------------GSNLQDYAGDYNYY 628
I++ H VK ++ + ++ + +++D ++ +
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347
Query: 629 LEKNLD----AREKELEREAELEERA 650
N D E L E R
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRK 373
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 8e-15
Identities = 51/207 (24%), Positives = 90/207 (43%), Gaps = 41/207 (19%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P GG+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 482 LLGEHNVL-----------------PNYF----EQNQAEALDLDKTVLETVAEAAEDWRI 520
LL ++ P F +N A L T +E + A +
Sbjct: 77 LLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPT-MEEITAVAMESGA 135
Query: 521 DD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
D I G D +V + LSGG++ +A + +++ LL+LD T+ LD
Sbjct: 136 HDFISGF-------PQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 576 IPSKEMLEEAI---SEYKG-TVITVSH 598
++ ++ + E+ TV+ ++
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQ 215
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 6e-08
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 72/219 (32%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDS 151
VK +++S +Y V VL+ +T+ + G+ LVG NG+GK+T + A + +P
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST---VAALLQNLYQPTG 73
Query: 152 GNV------IKAKSNMK-----IAFLSQE---FEVSMSRTVRE-----EFMSAFKEEMEI 192
G V + + + +A + QE F R+ RE + EE+
Sbjct: 74 GKVLLDGEPLV-QYDHHYLHTQVAAVGQEPLLF----GRSFRENIAYGLTRTPTMEEITA 128
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ A + +S P+ G+ +
Sbjct: 129 VAME------------------------------SGAHDF------ISGF-PQ-GYDTEV 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G+ S G + ++L + L++ P LL+LD T+ LD
Sbjct: 151 GETGN-QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 72.9 bits (180), Expect = 9e-15
Identities = 54/233 (23%), Positives = 103/233 (44%), Gaps = 63/233 (27%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N++ + +L++++GE +IIG +G GKSTLL ++ L+ P G+V
Sbjct: 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 483 L-GE------------------------HNVLPN------------YFEQNQAEALDLDK 505
L G+ H ++P + + EA + +
Sbjct: 63 LEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGE 122
Query: 506 TVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTL 564
+L + GL + L RK LSGGE+ R+A + + +P L
Sbjct: 123 YLLSEL-------------GLGDK-------LSRKPYELSGGEQQRVAIARALANEPILL 162
Query: 565 LVLDEPTNHLD-IPSKEMLE--EAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
DEPT +LD +K +++ I+E +++ V+H+R + ++ +R +E+K
Sbjct: 163 FA-DEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LAELTHRTLEMK 213
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 67.1 bits (165), Expect = 9e-13
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 61/238 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++ ENI K +G +LK ++ VKKGE V ++G +G+GK+T L I+ + P G
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 153 --NVIKAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQK 201
V N K+ F+ Q + T E + M G K E ++
Sbjct: 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP----MLKMGKPKKEAKER 120
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
LL E L + L K +L S
Sbjct: 121 GEY-----------LLSELGLGDK---------LSRKPYEL------------------S 142
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDR 316
G Q R+++ + L +P LL DEPT +LD + + + + +V+++H+R
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 1e-14
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 55/213 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++ +G
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 485 EHNV--------LP-----------NY-------FEQNQAEALDLDKT----VLETVAEA 514
+ V +P +Y N A L L K + + V E
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNH 573
AE + GL ++L+RK LSGG++ R+A + +V KP L +DEP ++
Sbjct: 124 AE------LLGL-------TELLNRKPRELSGGQRQRVALGRAIVRKPQVFL-MDEPLSN 169
Query: 574 LDIPSK---EMLEEAIS----EYKGTVITVSHD 599
LD +K M E + + T I V+HD
Sbjct: 170 LD--AKLRVRMRAE-LKKLQRQLGVTTIYVTHD 199
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 7e-12
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 2e-14
Identities = 59/237 (24%), Positives = 95/237 (40%), Gaps = 43/237 (18%)
Query: 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST 465
RG ++ + L+ + + N+ I GE +IGP+G GKST
Sbjct: 6 HHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKST 65
Query: 466 LLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEA- 514
L+ + LE GE+++ N+ N+ L TVL + A
Sbjct: 66 FLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAP 125
Query: 515 ----------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA----FCKFMVK 560
AE ++ LL + D LSGG+ R+A M +
Sbjct: 126 MKVRKWPREKAEAKAME----LLDKVGL-KDKAHAYPDSLSGGQAQRVAIARALA--M-E 177
Query: 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG------TVITVSHDRYFVKQIVNRVV 611
P +L DEPT+ LD P EM+ E +S K T++ V+H+ F +++ +RV+
Sbjct: 178 PKIML-FDEPTSALD-P--EMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVL 230
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 6e-13
Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 82/273 (30%)
Query: 89 TGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
S + + + + KS+ + VLK + +++GE V ++G +G+GK+T LR + E+
Sbjct: 16 PRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 149 PDSGNVI--------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
D G +I K + + + F Q F + TV A M++
Sbjct: 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVF--QRFNLFPHMTVLNNITLA---PMKVRK 130
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ + KA+E LL + V L D
Sbjct: 131 WPREKAEAKAME-----------------LLDK----VGL-----------------KDK 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQ 305
S S G R+++ + L +P ++L DEPT+ LD L ++ L +
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK----QLANE 208
Query: 306 DVPMVIISH---------DR-AFLDQLCTKIVE 328
+ MV+++H DR F+D I+E
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMDG--GYIIE 239
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 55/211 (26%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L G+ +IIG +G GKST L+ I LEKP G +++ N+ + Q + D
Sbjct: 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85
Query: 504 D---------------------KTVLETVAEAAEDWRIDDIKGLLGR----CNFKADMLD 538
+ TVLE V EA I+ +LG +A
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAP-------IQ-VLGLSKHDARERALKYL 137
Query: 539 RKVSL-----------LSGGEKARLAFCKFM-VKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
KV + LSGG++ R++ + + ++P LL DEPT+ LD P E++ E +
Sbjct: 138 AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL-FDEPTSALD-P--ELVGEVL 193
Query: 587 SEYKG------TVITVSHDRYFVKQIVNRVV 611
+ T++ V+H+ F + + + V+
Sbjct: 194 RIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 224
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 62/246 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 153 --NVIKAKSNMKIAFLSQEFEVSMSRT----VREEF-----MSAFKEEMEIAGKLERVQK 201
N+ + ++ + ++ + RT V + F M+ + ME ++ + K
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 126
Query: 202 --ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
A E A+ L + V +D + P
Sbjct: 127 HDARERALK-------------YLAK----VGID---ERAQGKYP-------------VH 153
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVII 312
S G Q R+S+ + L +PD+LL DEPT+ LD L ++ L ++ MV++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ----QLAEEGKTMVVV 209
Query: 313 SHDRAF 318
+H+ F
Sbjct: 210 THEMGF 215
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 2e-14
Identities = 51/246 (20%), Positives = 103/246 (41%), Gaps = 54/246 (21%)
Query: 386 SSAEKKLERLQEEEQIE---KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
++ + + E + + +R ++ K++ F Y+ ++
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDV-------------KDVTFTYQGKEKPAL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQ- 495
+ + +I +G+ A++G +G GKST+ L G + L H+V L N
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419
Query: 496 ----------------NQAEALDLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLD 538
N A A + + T E + +AA + I+ + LD
Sbjct: 420 ALVSQNVHLFNDTIANNIAYAAEGEYT-REQIEQAARQAHAMEFIENM-------PQGLD 471
Query: 539 RKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KG-T 592
+ + LSGG++ R+A + +++ + +L+LDE T+ LD S+ ++ A+ E K T
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKT 531
Query: 593 VITVSH 598
V+ ++H
Sbjct: 532 VLVIAH 537
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 59/257 (22%)
Query: 57 KSIAKAQSDVESLFSSSADEFE--NKKYSNKQSNTGASSISSGVKLENISKSYKG--VTV 112
K++ S+ + ++ F + + A ++ V +++++ +Y+G
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA 358
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS-NMK 162
L V++ + +G+ V LVG +G+GK+T + + DSG++ K +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 163 IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
A +SQ F + T+ A+ E E E++++A A E
Sbjct: 419 FALVSQNVHLF----NDTIANNI--AYAAEGEYT--REQIEQAARQA---------HAME 461
Query: 220 F--DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
F ++ Q LDT +G ++G L S G + R+++ + LL+D
Sbjct: 462 FIENMPQ------GLDT----------VIG---ENGTSL----SGGQRQRVAIARALLRD 498
Query: 278 PDLLLLDEPTNHLDLDT 294
+L+LDE T+ LD ++
Sbjct: 499 APVLILDEATSALDTES 515
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 6e-14
Identities = 56/246 (22%), Positives = 101/246 (41%), Gaps = 52/246 (21%)
Query: 385 ASSAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLL 439
++ + L E++ ++ R + F +N+ F Y +
Sbjct: 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEF-------------RNVTFTYPGREVPA 358
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----LPNYFEQ 495
NL I G+ A++G +G GKST+ LI G +L+ H++ L + Q
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQ 418
Query: 496 ----NQAEAL------------DLDKTVLETVAEAAEDWRIDD-IKGLLGRCNFKADMLD 538
+Q L ++ E + EAA D I + + LD
Sbjct: 419 VALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKM-------DNGLD 471
Query: 539 RKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY-KG-T 592
+ LLSGG++ R+A + +++ S +L+LDE T+ LD S+ ++ A+ E K T
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRT 531
Query: 593 VITVSH 598
+ ++H
Sbjct: 532 SLVIAH 537
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 1e-08
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 65/218 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G++
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----- 196
S ++A +SQ F + TV IA +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLF----NDTVAN----------NIAYARTEEYSR 447
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
E++++A A +F ++K+ G G+
Sbjct: 448 EQIEEAARMA---------YAMDF------------------INKM-DN-GLDTIIGENG 478
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
V S G + R+++ + LL+D +L+LDE T+ LD ++
Sbjct: 479 V-LLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 72.6 bits (179), Expect = 2e-13
Identities = 65/262 (24%), Positives = 110/262 (41%), Gaps = 50/262 (19%)
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
+ + L +S ++ + + E+ I+ + ++ ++GR +
Sbjct: 294 LRRLVASFTTLTQSF-----ASMDRVFQLIDEDYDIKNGVGAQPIE---IKQGR-----I 340
Query: 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L+
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 484 GEHNV----LPNYFEQ----NQAEAL------------DLDKTVLETVAEAAEDWRIDD- 522
HN+ + Q Q L T E V EAA+ D
Sbjct: 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTAT-DEEVVEAAKMANAHDF 459
Query: 523 IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPS 578
I L D +V LSGG+K RL+ + + +L+LDE T+ LD+ S
Sbjct: 460 IMNL-------PQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 579 KEMLEEAISEY-KG-TVITVSH 598
+ +++EA+ K T + V+H
Sbjct: 513 ESIIQEALDVLSKDRTTLIVAH 534
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 64/217 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----E 197
S +I + Q+ F S TV+E I G+ E
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILF----SDTVKE----------NILLGRPTATDE 445
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
V +A A+ N + L P+ G+ + G+R V
Sbjct: 446 EVVEA------------------------AKMANAHDF---IMNL-PQ-GYDTEVGERGV 476
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+S+ +I L +P +L+LDE T+ LDL++
Sbjct: 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 48/214 (22%), Positives = 86/214 (40%), Gaps = 59/214 (27%)
Query: 425 VTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---- 477
+ ++ F Y + N I G A++G G GKST+ KL+ R
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL-----YRFYDA 72
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDK--------TVL------------------ETV 511
G++ +G NV N+ + T+L E V
Sbjct: 73 EGDIKIGGKNV-------NKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125
Query: 512 AEAAEDWRIDD-IKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLV 566
+A + ++ D I+ L D V LSGGE+ R+A + ++K +++
Sbjct: 126 IKATKSAQLYDFIEAL-------PKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVI 178
Query: 567 LDEPTNHLDIPSKEMLEEAISEY-KG-TVITVSH 598
DE T+ LD ++ + ++A+ + K T+I ++H
Sbjct: 179 FDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAH 212
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 5e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 87 SNTGASSISSG-VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI 142
S T ++ +++ SY LK + + + G LVG G+GK+T ++
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 143 I 143
+
Sbjct: 66 L 66
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 69.4 bits (171), Expect = 2e-13
Identities = 41/167 (24%), Positives = 67/167 (40%), Gaps = 28/167 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 486 HNVLPNYFEQNQAEALDLDKTVLE--------TVAE------------AAEDWRIDDIKG 525
++ + L V E TV E ++ I
Sbjct: 68 QDITNKPAHVINRMGIAL---VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCK-FMVKPSTLLVLDEPT 571
L R + L + LSGGE+ LA + M +P LL++DEP+
Sbjct: 125 LFPRL---KERLKQLGGTLSGGEQQMLAIGRALMSRPK-LLMMDEPS 167
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.9 bits (167), Expect = 8e-13
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 68.3 bits (168), Expect = 5e-13
Identities = 52/206 (25%), Positives = 87/206 (42%), Gaps = 40/206 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----G 478
S + I++L + + NL + +GE A++GPNG GKSTL K++ G P
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVER 59
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLD----------------KTVLETVAEAAEDWR--I 520
GE+LL N+L ++ + L L + L+
Sbjct: 60 GEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFW 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSL-LSGGEKAR-----LAFCKFMVKPSTLLVLDEPTNHL 574
+K L ++ L R ++ SGGEK R L +++P+ VLDE + L
Sbjct: 120 TKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLL----VLEPT-YAVLDETDSGL 174
Query: 575 DIPSKEMLEEAISEYKGT-----VIT 595
DI + +++ ++ +G VIT
Sbjct: 175 DIDALKVVARGVNAMRGPNFGALVIT 200
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 70.3 bits (173), Expect = 5e-13
Identities = 54/176 (30%), Positives = 85/176 (48%), Gaps = 39/176 (22%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E + P +Y +N + L L + + V + AE
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV-KPSTLLVLDEPTNHLD 575
+ L A +LDRK LSGG++ R+A + +V +PS L LDEP ++LD
Sbjct: 120 --VLQL-------AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL-LDEPLSNLD 165
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 6e-12
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 51/226 (22%), Positives = 90/226 (39%), Gaps = 44/226 (19%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
G +++IK+L ED+ + +L + GE AI+GPNG GKSTL
Sbjct: 3 SSHHHHHSSGLVPRGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
Query: 467 LKLIMGLEKPR----GGEVLLGEHNVLPNYFEQNQAEALDLD----------------KT 506
+ G + GG V ++L E E + + +T
Sbjct: 63 SATLAG--REDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQT 120
Query: 507 VLETVAEAAEDWRID------DIKGLLGRCNFKADMLDRKVSL-LSGGEKAR-----LAF 554
L V +D ++ + D+L R V++ SGGEK R +A
Sbjct: 121 ALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA- 179
Query: 555 CKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT-----VIT 595
+++P L +LDE + LDI + +++ + ++ + ++T
Sbjct: 180 ---VLEPE-LCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVT 221
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 4e-12
Identities = 62/248 (25%), Positives = 105/248 (42%), Gaps = 54/248 (21%)
Query: 384 RAS-SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY---EDRLL 439
RAS SA++ LE L E+ IE+ + V+ +N+EF Y D +L
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADN--------ALALPNVEGSVSFENVEFRYFENTDPVL 359
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
N +++ G A++G G GKSTL+ LI L P G V + E +V +
Sbjct: 360 SG-VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR----TVKLKD 414
Query: 500 -----ALDLDKTVL------------------ETVAEAAEDWRIDD-IKGLLGRCNFKAD 535
+ +TVL + + EAA+ +I D I +
Sbjct: 415 LRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIIS-------LPE 467
Query: 536 MLDRKVSL----LSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG 591
D +V SGG+K RL+ + +VK +L+LD+ T+ +D +++ + + + Y
Sbjct: 468 GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK 527
Query: 592 --TVITVS 597
T ++
Sbjct: 528 GCTTFIIT 535
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V EN+ Y T VL V + VK G V ++G G+GK+T + +I +P+ G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 7e-12
Identities = 58/232 (25%), Positives = 96/232 (41%), Gaps = 47/232 (20%)
Query: 373 INRLGAGAN---SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429
+N L N AS AE+ E L EE+ + P + ++R G + KN
Sbjct: 310 LNELSNQFNMIQMALAS-AERIFEILDLEEEKDDPDAVELREVR-------GE--IEFKN 359
Query: 430 LEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN- 487
+ F Y + + + I+ G+K A++GP G GK+T++ L+M G++L+ +
Sbjct: 360 VWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419
Query: 488 --------------VL--PNYFEQNQAEAL---DLDKTVLETVAEAAEDWRIDD-IKGLL 527
VL F E L + T E + EAA+ D IK L
Sbjct: 420 RKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGAT-DEEIKEAAKLTHSDHFIKHL- 477
Query: 528 GRCNFKAD----MLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD 575
+ +L LS G++ LA + + +L+LDE T+++D
Sbjct: 478 ------PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 6e-07
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTT 138
++ +N+ SY K VLKD+T+ +K G+KV LVG G+GKTT
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 50/209 (23%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +++++ Y G +L+++++ + G++VGL+G G+GK+T L G +
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQ 78
Query: 156 KAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + Q+ S T R+ + + + + K +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQK-VFIFSGTFRKN-LDPNAAHSD-----QEIWKVADE 131
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L + K LD + D G S G +
Sbjct: 132 V--------GLRSVIEQFPGK--------LDFVLV----------DGGC----VLSHGHK 161
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
M L + +L +LLLDEP+ HLD T
Sbjct: 162 QLMCLARSVLSKAKILLLDEPSAHLDPVT 190
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 60.5 bits (147), Expect = 7e-10
Identities = 45/212 (21%), Positives = 81/212 (38%), Gaps = 42/212 (19%)
Query: 415 PERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
P G+ +T+K+L Y + + +I G++ ++G G GKSTLL +
Sbjct: 15 PSGGQ-----MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 473 LEKPRGGEVL-------LGEHN------VLPNYFEQNQAEAL-------DLDKTVLETVA 512
L G + + V+P Q + +LD +
Sbjct: 70 LLNTEGEIQIDGVSWDSITLEQWRKAFGVIP------QKVFIFSGTFRKNLDPNAAHSDQ 123
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKV----SLLSGGEKARLAFCKFMVKPSTLLVLD 568
E W++ D GL LD + +LS G K + + ++ + +L+LD
Sbjct: 124 EI---WKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLD 180
Query: 569 EPTNHLDIPSKEMLEEAI-SEYKG-TVITVSH 598
EP+ HLD + +++ + + TVI
Sbjct: 181 EPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 50/243 (20%), Positives = 97/243 (39%), Gaps = 60/243 (24%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++N+ +E+ N IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIK 66
Query: 483 LG-----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ N++ F D+ +V +A
Sbjct: 67 HSGRISFCSQFSWIMPGTIKENII---FGV------SYDEYRYRSVIKA----------- 106
Query: 526 LLGRCNFKAD--ML---------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
C + D + ++ LSGG++AR++ + + K + L +LD P +L
Sbjct: 107 ----CQLEEDISKFAEKDNIVLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYL 161
Query: 575 DI-PSKEMLEEAISEY-KG-TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631
D+ KE+ E + + T I V+ +K+ ++++ + + Y G ++
Sbjct: 162 DVLTEKEIFESCVCKLMANKTRILVTSKMEHLKK-ADKILILHEGSSYFY-GTFSELQNL 219
Query: 632 NLD 634
D
Sbjct: 220 QPD 222
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 35/115 (30%), Positives = 64/115 (55%), Gaps = 14/115 (12%)
Query: 93 SISSG-VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
S+++ V +EN++ + G VLKD+ +++++G+ + + G GAGKT+ L +I G+ EP
Sbjct: 1 SLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 150 DSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKA 202
G + K + +I+F SQ + M T++E F ++ E + V KA
Sbjct: 61 SEGKI---KHSGRISFCSQFSWI-MPGTIKENIIFGVSYDEY-----RYRSVIKA 106
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 58/305 (19%), Positives = 112/305 (36%), Gaps = 70/305 (22%)
Query: 386 SSAEKKLERLQEE-EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
S+ E +E + E+ K + + +G ++ N L N
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL--KDIN 58
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-----------------EHN 487
IERG+ A+ G G GK++LL +IMG +P G++ + N
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQNSWIMPGTIKEN 118
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD--ML-------- 537
++ + D+ +V +A C + D
Sbjct: 119 II----------GVSYDEYRYRSVIKA---------------CQLEEDISKFAEKDNIVL 153
Query: 538 -DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDI-PSKEMLEEAISEY-KG-TV 593
+ ++ LSGG++AR++ + + K + L +LD P +LD+ KE+ E + + T
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 594 ITVSHDRYFVKQIVNRVVEVKG---------SNLQDYAGDYNYYLEKNLDAREKELEREA 644
I V+ +K+ ++++ + S LQ+ D++ L + ER
Sbjct: 213 ILVTSKMEHLKK-ADKILILHEGSSYFYGTFSELQNLRPDFSSKLMGCDSFDQFSAERRN 271
Query: 645 ELEER 649
+
Sbjct: 272 SILTE 276
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 7e-08
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 62 AQSDVE----SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
+ ++V + F +K +N S+ + N S VLKD+
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGT--PVLKDIN 58
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
+++++G+ + + G GAGKT+ L +I G+ EP G + K + +I+F SQ + M T
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQNSWI-MPGT 114
Query: 178 VRE 180
++E
Sbjct: 115 IKE 117
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 56.0 bits (136), Expect = 8e-09
Identities = 51/246 (20%), Positives = 94/246 (38%), Gaps = 64/246 (26%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T++N F + N +I G A++G GCGKS+LL ++ G V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 483 LG-----------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ N+L F L++ +V +A
Sbjct: 64 IKGSVAYVPQQAWIQNDSLRENIL---FGC------QLEEPYYRSVIQA----------- 103
Query: 526 LLGRCNFKAD--ML---------DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
C D +L ++ V+ LSGG+K R++ + + + + + D+P + +
Sbjct: 104 ----CALLPDLEILPSGDRTEIGEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAV 158
Query: 575 DI-PSKEMLEEAISEYKG-----TVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628
D K + E I KG T I V+H ++ Q V+ ++ + G + + G Y
Sbjct: 159 DAHVGKHIFENVIGP-KGMLKNKTRILVTHSMSYLPQ-VDVIIVMSGGKISE-MGSYQEL 215
Query: 629 LEKNLD 634
L ++
Sbjct: 216 LARDGA 221
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + N + ++ L +T+ + +G V +VG G GK++ L + + + G+V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV- 62
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKA 202
+A++ Q+ + + ++RE F +E V +A
Sbjct: 63 --AIKGSVAYVPQQAWI-QNDSLRENILFGCQLEEP-----YYRSVIQA 103
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-08
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 537 LDRKVSLLSGGEKAR------LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+R ++ LSGGE+ LA ++ +LL+LDEPT +LD + L + Y
Sbjct: 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 110
Query: 591 G---TVITVSHDRYFVK 604
VI VSHD
Sbjct: 111 KKIPQVILVSHDEELKD 127
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 10/87 (11%)
Query: 537 LDRKVSLLSGGEKA------RLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+R ++ LSGGE+ RLA ++ +LL+LDEPT +LD + L + Y
Sbjct: 242 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYL 301
Query: 591 ---GTVITVSHDRYFVKQIVNRVVEVK 614
VI VSHD + V+ +
Sbjct: 302 KKIPQVILVSHDEELKD-AADHVIRIS 327
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 51.2 bits (122), Expect = 6e-07
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 12/180 (6%)
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
+ + + T ++ +E+V+K A + + + +
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSK--IGELASEIFA 214
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM------RMSLGKILLQDPD 279
+ + + + L + +R + S G ++ R+++ L +
Sbjct: 215 EFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS 274
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI-ISHDRAFLDQLCTKI-VETEMGVSR 335
LL+LDEPT +LD + L + + + +P VI +SHD D I + E G S+
Sbjct: 275 LLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSK 334
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 47.5 bits (113), Expect = 9e-06
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R + MS ++E E K + L +++ L +K D
Sbjct: 196 RLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLP 255
Query: 239 VSKL----MPELGFTADDGDRLVASFSSGWQMRMSLG-------KILLQDPDLLLLDEPT 287
S + E+ A +G + + S G Q+ ++L ++ + ++LDEPT
Sbjct: 256 YSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 288 NHLDLDTIEWLEGYLGK-QDVP-MVIISHDRAFLDQLCTKI-VETEMGVSR 335
+LD + L K + +P M+II+H R D I V+ + VS+
Sbjct: 316 VYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSK 366
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 10/86 (11%)
Query: 538 DRKVSLLSGGEKARLAFC-------KFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK 590
+ LSGGE+ +A + ++LDEPT +LD + L E + K
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK 334
Query: 591 --GTVITVSHDRYFVKQIVNRVVEVK 614
+I ++H R + + + ++ VK
Sbjct: 335 SIPQMIIITHHREL-EDVADVIINVK 359
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 2e-05
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 31/180 (17%)
Query: 452 KTAIIGPNGCGKSTLL-KLIMGLEKPRGG----EVLLGEHNVLPNYFEQNQAEALDLDKT 506
K I G G GK+TL+ K++ L K G EV E +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGF-----------RII 50
Query: 507 VLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLV 566
E + K L+G + A+ + +++
Sbjct: 51 TTEGKKKIFSSKFFTSKK-LVGSYGVNVQYFEE-----LAIPILERAYREAKKDRRKVII 104
Query: 567 LDE--PTNHLDIPSKEMLEEAISEYKGTVITVSHDRY---FVKQIVNR----VVEVKGSN 617
+DE ++++ + + + V+ R VK+I ++E+ N
Sbjct: 105 IDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPEN 164
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 692 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 8e-33 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 4e-35 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-26 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-33 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-28 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 2e-33 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-28 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 4e-32 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 6e-25 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 6e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-31 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 6e-31 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-23 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 1e-30 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-29 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-30 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-29 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-30 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 6e-22 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-29 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 8e-25 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 1e-29 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-28 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-27 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-28 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 3e-24 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-28 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 8e-22 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-26 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-23 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-24 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 7e-15 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 7e-19 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 8e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 0.001 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-12 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 2e-11 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-04 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 0.001 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 134 bits (339), Expect = 3e-36
Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 19/233 (8%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + F+ + + + L
Sbjct: 65 NKDITNKE--------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ + + + K K++ L + DR S G + +G+ L+ +
Sbjct: 117 YKKWIPKEEEMV-------EKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTN 168
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
P ++++DEP + + + L + + +II H + +
Sbjct: 169 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 125 bits (314), Expect = 8e-33
Identities = 42/220 (19%), Positives = 83/220 (37%), Gaps = 32/220 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N+ + + + ++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 483 LGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAA------------------ 515
++ + Q + TVLE +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
E+ ++ +L + DRK LSGG+ + + ++ ++V+DEP +
Sbjct: 123 KEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 575 DIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
+ + E K T + + H V ++ +
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 131 bits (331), Expect = 4e-35
Identities = 52/212 (24%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ HN+ L N Q + + TV E + +++ N
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 136
Query: 534 --------ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEA 585
+ + LSGG+K RL+ + + +L+LDE T+ LD+ S+ +++EA
Sbjct: 137 IMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEA 196
Query: 586 ISEYKG--TVITVSHDRYFVKQIVNRVVEVKG 615
+ T + V+H + +++V ++
Sbjct: 197 LDVLSKDRTTLIVAHRLSTITH-ADKIVVIEN 227
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 106 bits (267), Expect = 2e-26
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 49/248 (19%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
S L Q+ + S TV+E + + E V +A + A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD-----EEVVEAAKMA 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
D L D +V S G +
Sbjct: 132 --------NAHDFIMNLP--------QGYDTEV--------------GERGVKLSGGQKQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324
R+S+ +I L +P +L+LDE T+ LDL++ ++ L +D +I++H + +
Sbjct: 162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THAD 220
Query: 325 KIVETEMG 332
KIV E G
Sbjct: 221 KIVVIENG 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 129 bits (326), Expect = 2e-34
Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 17/205 (8%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 483 LG--EHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRC 530
G + LP Q+ A+ TV E +A + + ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 124
Query: 531 NFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI---- 586
++L+R + LSGG++ R+A + +V +L++DEP ++LD + + I
Sbjct: 125 QI-EELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183
Query: 587 SEYKGTVITVSHDRYFVKQIVNRVV 611
+ K T I V+HD+ + +R+
Sbjct: 184 QKLKVTTIYVTHDQVEAMTMGDRIA 208
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 127 bits (320), Expect = 1e-33
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 52/249 (20%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ I+ + Q + V TV E AF +++ K E ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--NIAFPLKIKKFPKDEIDKRVRW--- 119
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + +R A S G + R
Sbjct: 120 --------AAELLQI---------------------------EELLNRYPAQLSGGQRQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + ++ +PD+LL+DEP ++LD + ++ K V + ++HD+ +
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204
Query: 324 TKIVETEMG 332
+I G
Sbjct: 205 DRIAVMNRG 213
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 125 bits (315), Expect = 1e-33
Identities = 48/186 (25%), Positives = 83/186 (44%), Gaps = 10/186 (5%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY D+ + R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 483 LG---EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD- 538
V F + + +V + + A + + K + ++LD
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119
Query: 539 -RKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG----TV 593
+K+ LS G R+ ++ + + VLD+P +D SK + ++I E +
Sbjct: 120 KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVI 179
Query: 594 ITVSHD 599
I+ +
Sbjct: 180 ISSREE 185
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 110 bits (277), Expect = 2e-28
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 53/234 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G +I
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 156 -----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
K KI FL +E V +V E+++ A + + ALE
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISV-EDYLKAVASLYGVKVNKNEIMDALE------ 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
++L D + + S G R+ L
Sbjct: 113 --------SVEVL----------------------------DLKKKLGELSQGTIRRVQL 136
Query: 271 GKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLD 320
LL + ++ +LD+P +D D+ ++ + L ++ + ++ + ++ D
Sbjct: 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 190
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 127 bits (320), Expect = 2e-33
Identities = 48/198 (24%), Positives = 89/198 (44%), Gaps = 19/198 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V+ +L L NL IE+GE AI G G GK++LL LI+G + G +
Sbjct: 39 VSFSHLCLVGNPVL--KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 96
Query: 485 --------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
++P ++N + D+ ++V +A + DI + N +
Sbjct: 97 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQ--QDITKFAEQDN---TV 151
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG---TV 593
L LSGG++AR++ + + K + L +LD P +LD+ ++E + E+ T
Sbjct: 152 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 211
Query: 594 ITVSHDRYFVKQIVNRVV 611
I V+ ++ ++++
Sbjct: 212 ILVTSKMEHLR-KADKIL 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 113 bits (285), Expect = 1e-28
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 44/265 (16%)
Query: 66 VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
+E++ + + F +QSN S + G VLK++ ++KGE
Sbjct: 5 MENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEM 64
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
+ + G G+GKT+ L +I G+ E G + K + +++F SQ + M T++E +
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGII---KHSGRVSFCSQFSWI-MPGTIKENII-- 118
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
++ R + +++ D+ + + + +
Sbjct: 119 ----FGVSYDEYRYKSVVKACQLQQDITKF----------------AEQDNTVLGEGGVT 158
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYL 302
L S G + R+SL + + +D DL LLD P +LD+ T E +
Sbjct: 159 L--------------SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 204
Query: 303 GKQDVPMVIISHDRAFLDQLCTKIV 327
+ ++++ L + KI+
Sbjct: 205 LMANKTRILVTSKMEHL-RKADKIL 228
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 122 bits (308), Expect = 4e-32
Identities = 38/212 (17%), Positives = 88/212 (41%), Gaps = 28/212 (13%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LG---------------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
+ + ++ +N L+ D T + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM 581
++ + + N + + +SGG++ RLA + ++ +L+LDE T LD S+ M
Sbjct: 121 FVENMPDQLN---TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESM 177
Query: 582 LEEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+++A+ T + ++H + +++
Sbjct: 178 VQKALDSLMKGRTTLVIAHRLSTIVD-ADKIY 208
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 101 bits (254), Expect = 6e-25
Identities = 36/241 (14%), Positives = 87/241 (36%), Gaps = 35/241 (14%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ N+ + ++ +E + + + + L +D
Sbjct: 62 DGQPIDNISLENWRS--QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ + D L + S G + R+++ +
Sbjct: 120 SFVENMPDQLNTEV--------------------------GERGVKISGGQRQRLAIARA 153
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331
L++P +L+LDE T LD ++ ++ L + ++I+H + + KI E
Sbjct: 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEK 212
Query: 332 G 332
G
Sbjct: 213 G 213
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 122 bits (308), Expect = 6e-32
Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G +I
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL- 216
N +++ R + A K ++ + R+ + +L +
Sbjct: 63 GQN-----------INLVRDKDGQLKVADKNQLRLLRT--RLTMVFQ----HFNLWSHMT 105
Query: 217 -LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L+ + ++ + K + ++G + S G Q R+S+ + L
Sbjct: 106 VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 165
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+PD+LL DEPT+ LD + + + + ++ MV+++H+ F + + ++ G
Sbjct: 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 120 bits (303), Expect = 3e-31
Identities = 47/220 (21%), Positives = 86/220 (39%), Gaps = 31/220 (14%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + + +L Y + +L G+ +IIG +G GKST L+ I LEKP G ++
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 483 LGEHNVLPNYFEQN---------------------QAEALDLDKTVLETVAEAA------ 515
+ N+ + Q L TVLE V EA
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574
+ + L + + LSGG++ R++ + + +L+ DEPT+ L
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSAL 180
Query: 575 DIPSKEMLEEAISEYKG---TVITVSHDRYFVKQIVNRVV 611
D + + + T++ V+H+ F + + + V+
Sbjct: 181 DPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVI 220
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 119 bits (300), Expect = 6e-31
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 32/215 (14%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y +R L+ T+ GE TA++GPNG GKST+ L+ L +P GG++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 482 LLGEHNV---------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
LL + ++N A L T+ E A A +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKE 580
I GL + +D S LSGG++ +A + +++ +L+LD+ T+ LD S+
Sbjct: 132 SFISGLPQGYD---TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188
Query: 581 MLEEAISEYKG----TVITVSHDRYFVKQIVNRVV 611
+E+ + E +V+ ++ V+Q + ++
Sbjct: 189 QVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHIL 222
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.4 bits (245), Expect = 1e-23
Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 53/252 (21%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V+ +++S +Y V VL+ +T+ ++ GE LVG NG+GK+T ++ +P G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 155 I----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ + ++A + QE +V R+++E ++ + K+
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
+ L +D + D + S G
Sbjct: 131 -----HSFISGLPQGYD-----------------------------TEVDEAGSQLSGGQ 156
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320
+ ++L + L++ P +L+LD+ T+ LD ++ +E L + +++I+ + +
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV- 215
Query: 321 QLCTKIVETEMG 332
+ I+ E G
Sbjct: 216 EQADHILFLEGG 227
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (297), Expect = 1e-30
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI- 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ ++ ++ ++ + + K + +S +
Sbjct: 61 ---------------------YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVY 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ K + V +D +V ++ LG + +R S G + R++LG+ ++
Sbjct: 100 ---DNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIV 155
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331
+ P + L+DEP ++LD + L K V + ++HD+ + +I
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR 215
Query: 332 G 332
G
Sbjct: 216 G 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 113 bits (285), Expect = 4e-29
Identities = 47/211 (22%), Positives = 100/211 (47%), Gaps = 23/211 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 483 LGEHNVL------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
+G+ V + Q+ AL TV + +A + ++ ++
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ ++L+RK LSGG++ R+A + +V+ + ++DEP ++LD + +
Sbjct: 122 EVAELLGL-TELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRA 180
Query: 585 AISE----YKGTVITVSHDRYFVKQIVNRVV 611
+ + T I V+HD+ + +R+
Sbjct: 181 ELKKLQRQLGVTTIYVTHDQVEAMTMGDRIA 211
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (292), Expect = 4e-30
Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ I++L +E + E +AG +E V+
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL-------RFVAGFYASSSSEIEEMVE 115
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
R + L + V+++S G ++
Sbjct: 116 ------RATEIAGL---------------------------GEKIKDRVSTYSKGMVRKL 142
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
+ + L+ +P L +LDEPT+ LD+ + ++ + +++ SH+ ++ LC +
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 326 IV 327
I
Sbjct: 203 IA 204
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 115 bits (290), Expect = 9e-30
Identities = 45/203 (22%), Positives = 85/203 (41%), Gaps = 17/203 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
NV+ E + + +E + A + ++
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 122
Query: 532 FKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK- 590
+ + +VS S G +L + ++ L +LDEPT+ LD+ + + + + +
Sbjct: 123 L-GEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ 181
Query: 591 --GTVITVSHDRYFVKQIVNRVV 611
T++ SH+ V+ + +R+
Sbjct: 182 EGLTILVSSHNMLEVEFLCDRIA 204
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 116 bits (293), Expect = 4e-30
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 54/243 (22%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +I
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 157 ---------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M IA + + + TV E M E +++ LE
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG----AYNRKDKEGIKRDLE--- 120
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ F L+ + +L + S G Q
Sbjct: 121 -------WIFSLFPRLKERL--------------------------KQLGGTLSGGEQQM 147
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCT 324
+++G+ L+ P LL++DEP+ L + + + ++ ++++ + ++
Sbjct: 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207
Query: 325 KIV 327
Sbjct: 208 YGY 210
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 114 bits (287), Expect = 2e-29
Identities = 42/208 (20%), Positives = 82/208 (39%), Gaps = 23/208 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ +++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 484 GEHNVLPNYFEQ---------NQAEALDLDKTVLETVA--------EAAEDWRIDDIKGL 526
++ + + + TV E + + ++ I L
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAI 586
R + L + LSGGE+ LA + ++ LL++DEP+ L + E I
Sbjct: 126 FPR---LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVI 182
Query: 587 SEYKG---TVITVSHDRYFVKQIVNRVV 611
+ T++ V + ++ +
Sbjct: 183 QKINQEGTTILLVEQNALGALKVAHYGY 210
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 116 bits (292), Expect = 6e-30
Identities = 48/209 (22%), Positives = 96/209 (45%), Gaps = 24/209 (11%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ H++ ++ + + L + +V + ++
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM-SVEKVIYAAKLAGAHD 120
Query: 526 LLGRCNFKADML-DRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEE 584
+ + + + + LSGG++ R+A + +V +L+ DE T+ LD S+ ++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMR 180
Query: 585 AISEYKG--TVITVSHDRYFVKQIVNRVV 611
+ + TVI ++H VK +R++
Sbjct: 181 NMHKICKGRTVIIIAHRLSTVKN-ADRII 208
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 93.1 bits (231), Expect = 6e-22
Identities = 45/249 (18%), Positives = 97/249 (38%), Gaps = 51/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++ + Q+ ++R++ + A K+ K
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNV-LLNRSIIDNISLA--NPGMSVEKVIYAAKLAG- 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + A S G +
Sbjct: 118 AHDFISELREGYNTIV--------------------------------GEQGAGLSGGQR 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + L+ +P +L+ DE T+ LD ++ + + K + ++II+H + + +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNA 204
Query: 324 TKIVETEMG 332
+I+ E G
Sbjct: 205 DRIIVMEKG 213
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 115 bits (289), Expect = 1e-29
Identities = 55/219 (25%), Positives = 91/219 (41%), Gaps = 30/219 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ Y+ A NL I+ GE +I+GP+G GKST+L +I L+KP GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 481 VLLGEHNV-------LPNYFEQN-----QAEALDLDKTVLETVAEAAE---------DWR 519
V + L Q L T LE V + R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSK 579
L + + K + LSGG++ R+A + + +++ D+PT LD +
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 580 ----EMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVK 614
++L++ E TV+ V+HD + R++ +K
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVAR-FGERIIYLK 219
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 114 bits (287), Expect = 2e-29
Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 59/257 (22%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 V--------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
V + KI F+ Q+F + T E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE---------------- 105
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
L+ + A++ + + + + +
Sbjct: 106 --------------------LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G Q R+++ + L +P ++L D+PT LD T ++ L+ + +V+++HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 316 RAFLDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 206 INVA-RFGERIIYLKDG 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 116 bits (291), Expect = 1e-29
Identities = 51/211 (24%), Positives = 91/211 (43%), Gaps = 27/211 (12%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y R NL I G+ A++G +G GKST+ LI G +L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 483 LGEHNV--------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ H++ L N N ++ E + EAA D
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEML 582
+ N ++ LLSGG++ R+A + +++ S +L+LDE T+ LD S+ +
Sbjct: 134 FINKMD--NGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAI 191
Query: 583 EEAISEYKG--TVITVSHDRYFVKQIVNRVV 611
+ A+ E + T + ++H ++Q + +V
Sbjct: 192 QAALDELQKNRTSLVIAHRLSTIEQ-ADEIV 221
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (254), Expect = 8e-25
Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 50/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G+++
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
A ++A +SQ + + +E E++++A
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-----EQIEEAARM 128
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A +D + + + LD + S G +
Sbjct: 129 A--------YAMDFINKMD--------NGLDTII--------------GENGVLLSGGQR 158
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + LL+D +L+LDE T+ LD ++ ++ L + ++ ++I+H + + +
Sbjct: 159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQA 217
Query: 324 TKIVETEMG 332
+IV E G
Sbjct: 218 DEIVVVEDG 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 115 bits (289), Expect = 1e-29
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 26/212 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ + N+ + +A +L + G+ +IG +G GKSTL++ + LE+P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 481 VLLGEHNVLP-----------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDI 523
VL+ + Q L +TV VA E D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
LL D D S LSGG+K R+A + + +L+ DE T+ LD + +
Sbjct: 122 TELLSLVGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 584 EAISE----YKGTVITVSHDRYFVKQIVNRVV 611
E + + T++ ++H+ VK+I + V
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVA 212
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 108 bits (270), Expect = 5e-27
Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 65/258 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 154 VI-------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ K+ +I + Q F + SRTV +E+ K E
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA----LPLELDNTPKDEV 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L D D +
Sbjct: 118 KRRVTE-----------LLSLVGL---------------------------GDKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD +I L + ++ + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 315 DRAFLDQLCTKIVETEMG 332
+ + ++C + G
Sbjct: 200 EMDVVKRICDCVAVISNG 217
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 111 bits (279), Expect = 2e-28
Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 17/203 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 485 EHNVL------PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNF 532
E + Q+ AL +V E ++ + + + +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 120
Query: 533 KADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE---- 588
A +LDRK LSGG++ R+A + +V ++ +LDEP ++LD + + IS
Sbjct: 121 -AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKR 179
Query: 589 YKGTVITVSHDRYFVKQIVNRVV 611
T+I V+HD+ + +++V
Sbjct: 180 LGRTMIYVTHDQVEAMTLADKIV 202
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 109 bits (273), Expect = 2e-27
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + Q + + +V E K + A K Q+ +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK--LAGAKKEVINQRVNQ----- 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L A DR + S G + R++
Sbjct: 114 ------VAEVLQL---------------------------AHLLDRKPKALSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTK 325
+G+ L+ +P + LLDEP ++LD + + M+ ++HD+ L K
Sbjct: 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200
Query: 326 IVETEMG 332
IV + G
Sbjct: 201 IVVLDAG 207
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 111 bits (279), Expect = 2e-28
Identities = 43/205 (20%), Positives = 80/205 (39%), Gaps = 21/205 (10%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ ++++ + + GE ++GPNG GKSTLL + G+ +G
Sbjct: 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA 58
Query: 484 GE-------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
G+ + + +Q + V + D ++ + D
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 118
Query: 537 LDRKVSLLSGGEKARLAFCKFMVKPST-------LLVLDEPTNHLDIPSKEMLEEAISEY 589
L R + LSGGE R+ +++ + LL+LDEP N LD+ + L++ +S
Sbjct: 119 LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178
Query: 590 KG---TVITVSHDRYFVKQIVNRVV 611
++ SHD + +R
Sbjct: 179 CQQGLAIVMSSHDLNHTLRHAHRAW 203
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 99.6 bits (248), Expect = 3e-24
Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 70/250 (28%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+++++S T L ++ EV+ GE + LVG NGAGK+T L +AG G++
Sbjct: 4 MQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFA 58
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + A+LSQ+ + V + E +
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT----LHQHDKTRTELLNDVAG--- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
A+ LD D R S G R
Sbjct: 112 ---------------------ALALD-----------------DKLGRSTNQLSGGEWQR 133
Query: 268 MSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317
+ L ++LQ LLLLDEP N LD+ L+ L +Q + +V+ SHD
Sbjct: 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193
Query: 318 FLDQLCTKIV 327
+ +
Sbjct: 194 HTLRHAHRAW 203
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 110 bits (275), Expect = 7e-28
Identities = 56/204 (27%), Positives = 97/204 (47%), Gaps = 15/204 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNVLPNYFEQ------NQAEALDLDKTVLETVAEAAEDWRIDD---IKGLLGRCNFKA 534
+V E+ Q +L V + + +I D + +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 535 DMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YK 590
+LDR LSGGE+ R+A + +V +L+LDEP + LD ++E E +S K
Sbjct: 119 HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK 178
Query: 591 GTVITVSHDRYFVKQIVNRVVEVK 614
TV+ ++HD+ + + +R+ V
Sbjct: 179 LTVLHITHDQTEARIMADRIAVVM 202
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 92.4 bits (229), Expect = 8e-22
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 56/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++E++S+ +K L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ IAF+ Q + + V++ F M+ +RV D
Sbjct: 61 GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKRVLDTAR----D 114
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L DR + S G Q R++
Sbjct: 115 LKIEHLL-------------------------------------DRNPLTLSGGEQQRVA 137
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325
L + L+ +P +LLLDEP + LD T E L + ++ I+HD+ + +
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 326 IVETEMG 332
I G
Sbjct: 198 IAVVMDG 204
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 106 bits (265), Expect = 2e-26
Identities = 54/215 (25%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 423 SVVTIKNL--EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 481 VLLGEHNVLPNYFEQ-----------NQAEALDLDKTVLETVAEAAE------DWRIDDI 523
+ + V N Q AL + T E +A + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLE 583
+ + + +L+ LSG ++ R+A + +VK +LL+LDEP ++LD ++
Sbjct: 122 EEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSAR 180
Query: 584 EAISE----YKGTVITVSHDRYFVKQIVNRVVEVK 614
+ E T++ VSHD + I +RV +
Sbjct: 181 ALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLV 215
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.8 bits (243), Expect = 2e-23
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 61/257 (23%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 V-------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERV 199
+ I + KI + Q + + + T E +M +RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ + +D+ L +
Sbjct: 122 EEVAK----ILDIHHVL-------------------------------------NHFPRE 140
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
S Q R++L + L++DP LLLLDEP ++LD + + + V ++++SHD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 316 RAFLDQLCTKIVETEMG 332
A + + ++ G
Sbjct: 201 PADIFAIADRVGVLVKG 217
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 98.5 bits (245), Expect = 7e-24
Identities = 52/184 (28%), Positives = 84/184 (45%), Gaps = 14/184 (7%)
Query: 442 RANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------NYFE 494
R N+ E + ++GP G GKS L+LI G+ KP GEV L ++ P
Sbjct: 15 RLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGF 74
Query: 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGL---LGRCNFKADMLDRKVSLLSGGEKAR 551
Q AL +V +A + + + A +LDRK + LSGGE+ R
Sbjct: 75 VPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQR 134
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIV 607
+A + +V LL+LDEP + +D+ +K +L E + + ++ V+HD +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 608 NRVV 611
+ V
Sbjct: 195 DEVA 198
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.7 bits (178), Expect = 7e-15
Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 57/243 (23%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
K + +V +E+ + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I F+ Q++ + +V + +E + RV++ E + L+
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAE-KLGIAHLL 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
DR A S G + R++L +
Sbjct: 121 ----------------------------------------DRKPARLSGGERQRVALARA 140
Query: 274 LLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+ P LLLLDEP + +D +E L + DVP++ ++HD L ++
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 330 EMG 332
G
Sbjct: 201 LNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 82.7 bits (203), Expect = 7e-19
Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 14/189 (7%)
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K I G G GK+TL+K I+ R E +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRT------------GFRI 49
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPT 571
+I K + + ++ + A+ + ++++DE
Sbjct: 50 ITTEGKKKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIG 109
Query: 572 NHLDI--PSKEMLEEAISEYKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629
++++ + + + V+ R + ++ + + L
Sbjct: 110 KMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVIL 169
Query: 630 EKNLDAREK 638
E L E+
Sbjct: 170 EDILSLLER 178
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 8e-07
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K+ + G G GKTT ++ I + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW 32
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 38.4 bits (88), Expect = 0.001
Identities = 7/81 (8%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL--DTIEWLEGYLGKQDVPMVI 311
+ + + + + ++++DE + + + +V +V
Sbjct: 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVA 135
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
R L +I
Sbjct: 136 TIPIRDVH-PLVKEIRRLPGA 155
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.3 bits (90), Expect = 0.001
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 552 LAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGT---VITVSHDRYF 602
L F +PS VLDE LDI + + + I ++ I +S
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM 398
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 692 | |||
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.88 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.86 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.71 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.7 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.62 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.57 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.16 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.13 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.08 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.01 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.98 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.93 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.34 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.2 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.64 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.45 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.28 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.26 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.2 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.01 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 97.01 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.98 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.92 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.87 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 96.84 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.74 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.73 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.68 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.59 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.56 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.55 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.54 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.46 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.42 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 96.42 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.4 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.37 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.36 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 96.34 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.33 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.32 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.28 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.28 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.23 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.22 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.21 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.2 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.19 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.18 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.14 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.1 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.1 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.08 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.08 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.05 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.96 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.93 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.89 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.88 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.86 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.86 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.85 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.85 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.84 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.82 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.79 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.78 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 95.71 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.71 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.67 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 95.66 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.65 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.65 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.64 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.63 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.61 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.61 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.61 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.59 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.55 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.51 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.48 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 95.48 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.48 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.46 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.45 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 95.44 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.44 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.39 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.39 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.38 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 95.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.32 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.31 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.31 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 95.26 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.24 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.24 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.18 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.14 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.12 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.12 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.12 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.1 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.09 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.09 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.07 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.07 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.05 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.05 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.05 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.0 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.0 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.99 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.99 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.98 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.97 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.96 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.95 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.94 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.93 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.93 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.9 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.9 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 94.9 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.88 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.88 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 94.86 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.86 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.84 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.81 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.81 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.81 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.8 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.79 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 94.79 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 94.77 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.77 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.75 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.72 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.72 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.71 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.68 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.68 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.68 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.64 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.6 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.58 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.57 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.57 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.56 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 94.52 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.52 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.52 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.52 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.49 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.47 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.46 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.44 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 94.44 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 94.44 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.38 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.38 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.37 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.33 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.32 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 94.3 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.29 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.28 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.27 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.23 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 94.21 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.19 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.18 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 94.18 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.17 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.14 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.13 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.11 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 94.08 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.03 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 94.03 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.0 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.98 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.95 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.94 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.94 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.91 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.89 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.86 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.85 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.78 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.77 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.76 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 93.76 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.75 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 93.75 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.74 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.73 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.69 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 93.64 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.63 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.62 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.61 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 93.61 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 93.6 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.58 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.58 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.55 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.55 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.51 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 93.5 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.49 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 93.49 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.48 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.45 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.43 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.41 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.38 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.36 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.36 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.35 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.34 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.32 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.31 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 93.3 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.29 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 93.28 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.24 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.21 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 93.19 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 93.17 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.17 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.16 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 93.15 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.15 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.14 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.11 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.07 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.07 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.06 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.03 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.02 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 92.99 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.98 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.91 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.9 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.9 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.9 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.9 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 92.87 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.86 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.85 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.84 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.83 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 92.82 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.79 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.78 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.78 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.74 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 92.74 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.68 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.65 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 92.64 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.62 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.59 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.58 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.55 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.54 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.54 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 92.51 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 92.51 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 92.48 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.48 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 92.47 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.46 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.43 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.42 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 92.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.42 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.41 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.4 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.4 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.4 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 92.37 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.36 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.35 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.35 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.35 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.32 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.32 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.31 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.29 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.28 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 92.26 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 92.23 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.2 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.17 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 92.17 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.15 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 92.09 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.08 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.04 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.02 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 92.01 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.96 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 91.96 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.93 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.92 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.92 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.87 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.87 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.81 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.78 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 91.76 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.68 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.63 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.56 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.55 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.55 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.54 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.5 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 91.47 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.46 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.43 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.4 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.35 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.34 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.34 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 91.3 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.28 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 91.27 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 91.25 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 91.17 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 91.17 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 91.08 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.06 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.06 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 91.02 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.0 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.99 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 90.92 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.91 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 90.91 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.9 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.87 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.86 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.85 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.82 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 90.79 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.77 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.64 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.63 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.63 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.62 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 90.59 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.58 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 90.5 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 90.47 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.47 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 90.43 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 90.41 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.39 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.33 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.28 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.21 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.17 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.99 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 89.98 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 89.94 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 89.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 89.92 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 89.91 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 89.91 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.86 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 89.85 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.85 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 89.83 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.79 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 89.73 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 89.72 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.65 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 89.41 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.39 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 89.31 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.1 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 88.91 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 88.87 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 88.82 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.77 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.54 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.31 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.0 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 87.96 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.92 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.82 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.78 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.75 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.68 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.65 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 87.61 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 87.55 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.99 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.41 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.41 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 86.4 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 85.64 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.5 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 85.38 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 85.35 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.24 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 84.89 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.82 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.61 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 84.61 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 84.55 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 84.15 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.08 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.94 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.8 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.37 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 83.21 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 82.97 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 82.86 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 82.76 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 81.54 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.21 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.56 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 80.13 |
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=345.34 Aligned_cols=207 Identities=29% Similarity=0.451 Sum_probs=179.9
Q ss_pred CCCEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC--------------
Q ss_conf 885799938999699000351249997796999996898418999999977999996179987787--------------
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (692)
Q Consensus 95 ~~~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~-------------- 160 (692)
|+.|+++|++++|++..+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 M~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~ 80 (240)
T d1g2912 1 MAGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (240)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred CCCEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCC
T ss_conf 98189986999989999985606688699899999999980999999996487889898999999803566444245322
Q ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
Q ss_conf 56999825675687998999999632899999999999999884200105788877999999999986169000999999
Q 005532 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (692)
Q Consensus 161 ~~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (692)
..||||+|+|.+.+..||+||+...... ........+.++.
T Consensus 81 r~ig~v~Q~~~L~~~ltV~eni~~~~~~---------------------------------------~~~~~~e~~~~v~ 121 (240)
T d1g2912 81 RDIAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVR 121 (240)
T ss_dssp SSEEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHH
T ss_pred CCCEECCCCHHHCCHHHHHHHHHHHHHH---------------------------------------CCCCHHHHHHHHH
T ss_conf 5512002212223101166763306877---------------------------------------2999899999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECCH
Q ss_conf 770341999311145456689579999999999813999599717899999988999999872----4998399994398
Q 005532 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (692)
Q Consensus 241 ~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd~ 316 (692)
++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|+|+||||+
T Consensus 122 ~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~ 200 (240)
T d1g2912 122 EVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ 200 (240)
T ss_dssp HHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH
T ss_conf 999875996-6762993349999999999999982699889825887656989998999999999863698899995999
Q ss_pred HHHHHHCCEEEEEECCEEEEECCCHH
Q ss_conf 88984448589972333778216858
Q 005532 317 AFLDQLCTKIVETEMGVSRTYEGNYS 342 (692)
Q Consensus 317 ~~l~~~~~~i~~l~~G~~~~~~g~y~ 342 (692)
+++..+||+|+++.+|++.. .|...
T Consensus 201 ~~~~~~~drv~vm~~G~iv~-~G~~~ 225 (240)
T d1g2912 201 VEAMTMGDRIAVMNRGVLQQ-VGSPD 225 (240)
T ss_dssp HHHHHHCSEEEEEETTEEEE-EECHH
T ss_pred HHHHHHCCEEEEEECCEEEE-ECCHH
T ss_conf 99999699999998999999-85999
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=346.96 Aligned_cols=209 Identities=28% Similarity=0.402 Sum_probs=181.3
Q ss_pred CCCCEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC--------EEEE
Q ss_conf 88857999389996990003512499977969999968984189999999779999961799877875--------6999
Q 005532 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAF 165 (692)
Q Consensus 94 ~~~~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~--------~i~y 165 (692)
.|..|+++|++++|++..+|++|||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++ .|||
T Consensus 3 ~M~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~ 82 (239)
T d1v43a3 3 KMVEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISM 82 (239)
T ss_dssp CCCCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEE
T ss_pred CCCEEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEE
T ss_conf 10749998799999999998130678879989999999998299999999758999878799916413547700015899
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 82567568799899999963289999999999999988420010578887799999999998616900099999977034
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
|+|++.+.+..||+||+....... .......+.++.++++.
T Consensus 83 v~Q~~~l~~~ltv~enl~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~ 123 (239)
T d1v43a3 83 VFQSYAVWPHMTVYENIAFPLKIK---------------------------------------KFPKDEIDKRVRWAAEL 123 (239)
T ss_dssp EEC------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHH
T ss_pred EEECHHHCCCCHHHHHHHHHHHHC---------------------------------------CCCHHHHHHHHHHHHHH
T ss_conf 800335342220999999999873---------------------------------------99999999999999987
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECCHHHHHH
Q ss_conf 1999311145456689579999999999813999599717899999988999999872----499839999439888984
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~ 321 (692)
+|+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++++ +.+.|+|+||||++++..
T Consensus 124 ~~l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~ 202 (239)
T d1v43a3 124 LQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMT 202 (239)
T ss_dssp TTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHH
T ss_pred CCCH-HHHCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
T ss_conf 5985-566099546999998899997664049982430688666898999899999999987319807999489999998
Q ss_pred HCCEEEEEECCEEEEECCCHHH
Q ss_conf 4485899723337782168589
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 322 ~~~~i~~l~~G~~~~~~g~y~~ 343 (692)
+||+|+++.+|++. ..|...+
T Consensus 203 ~~dri~vm~~G~iv-~~G~~~e 223 (239)
T d1v43a3 203 MGDRIAVMNRGQLL-QIGSPTE 223 (239)
T ss_dssp HCSEEEEEETTEEE-EEECHHH
T ss_pred HCCEEEEEECCEEE-EECCHHH
T ss_conf 69999999899999-9859999
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=345.97 Aligned_cols=205 Identities=27% Similarity=0.430 Sum_probs=178.8
Q ss_pred EEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC--------EEEEECCC
Q ss_conf 7999389996990003512499977969999968984189999999779999961799877875--------69998256
Q 005532 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (692)
Q Consensus 98 i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~--------~i~yv~Q~ 169 (692)
|+++|++++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .||||+|+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECCC
T ss_conf 99999999989999981117788699899999899982999999996587888888999999778886444322234334
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 75687998999999632899999999999999884200105788877999999999986169000999999770341999
Q 005532 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (692)
Q Consensus 170 ~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~ 249 (692)
+.+.+..||+||+.....-. .......+.++.++++.+|+.
T Consensus 81 ~~l~~~~tv~eni~~~~~~~---------------------------------------~~~~~~~~~~v~~~l~~~~l~ 121 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKLA---------------------------------------GAKKEVINQRVNQVAEVLQLA 121 (232)
T ss_dssp CCC------------------------------------------------------------CHHHHHHHHHHHHC---
T ss_pred CCCCCCHHHHHHHHHHHHHC---------------------------------------CCCHHHHHHHHHHHHHHCCCH
T ss_conf 20264333788978999875---------------------------------------998899999999999757886
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHHCCE
Q ss_conf 311145456689579999999999813999599717899999988999999872----4998399994398889844485
Q 005532 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTK 325 (692)
Q Consensus 250 ~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~~~ 325 (692)
+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.++|+|+||||++++..+||+
T Consensus 122 -~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr 200 (232)
T d2awna2 122 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200 (232)
T ss_dssp -------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred -HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCE
T ss_conf -5664896569999999999999970399889975888788988998999999999874298799994899999996999
Q ss_pred EEEEECCEEEEECCCHHH
Q ss_conf 899723337782168589
Q 005532 326 IVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 326 i~~l~~G~~~~~~g~y~~ 343 (692)
|+.+.+|++. ..|...+
T Consensus 201 i~vm~~G~iv-~~G~~~e 217 (232)
T d2awna2 201 IVVLDAGRVA-QVGKPLE 217 (232)
T ss_dssp EEEEETTEEE-EEECHHH
T ss_pred EEEEECCEEE-EEECHHH
T ss_conf 9999799999-9808999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=0 Score=340.83 Aligned_cols=206 Identities=26% Similarity=0.399 Sum_probs=178.2
Q ss_pred CCCEEEEEEEEEEC--CEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC------------
Q ss_conf 88579993899969--9000351249997796999996898418999999977999996179987787------------
Q 005532 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (692)
Q Consensus 95 ~~~i~i~nvs~~y~--~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~------------ 160 (692)
|..|+++|++++|+ ...+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 M~~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (242)
T d1oxxk2 1 MVRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (242)
T ss_dssp CCCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred CCEEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHH
T ss_conf 98899975799988999899804078987998999998999809999999975868887459999999513731115312
Q ss_pred -CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf -5699982567568799899999963289999999999999988420010578887799999999998616900099999
Q 005532 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 161 -~~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
.+|||++|++.+.+..||+||+...... . .+.....+.++
T Consensus 81 rr~ig~vfQ~~~L~p~ltv~eni~~~l~~-----------------~----------------------~~~~~~~~~~v 121 (242)
T d1oxxk2 81 DRKIGMVFQTWALYPNLTAFENIAFPLTN-----------------M----------------------KMSKEEIRKRV 121 (242)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTT-----------------S----------------------SCCHHHHHHHH
T ss_pred HCCCEEEECCCCCCCCCCHHHHHHHHHHH-----------------H----------------------CCCHHHHHHHH
T ss_conf 04514773043346666577776655676-----------------1----------------------37999999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECC
Q ss_conf 9770341999311145456689579999999999813999599717899999988999999872----499839999439
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd 315 (692)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++++ +.+.|+|+||||
T Consensus 122 ~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd 200 (242)
T d1oxxk2 122 EEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200 (242)
T ss_dssp HHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESC
T ss_pred HHHHHHCCHH-HHHHCCHHHCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 9998665917-666489545999998589987577604661454478667998998899899999986359879999799
Q ss_pred HHHHHHHCCEEEEEECCEEEEECCCH
Q ss_conf 88898444858997233377821685
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGNY 341 (692)
Q Consensus 316 ~~~l~~~~~~i~~l~~G~~~~~~g~y 341 (692)
++++..+||+|+++.+|++. ..|..
T Consensus 201 ~~~~~~~~dri~vm~~G~iv-~~g~~ 225 (242)
T d1oxxk2 201 PADIFAIADRVGVLVKGKLV-QVGKP 225 (242)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEECH
T ss_pred HHHHHHHCCEEEEEECCEEE-EECCH
T ss_conf 99999969999999899999-98699
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=336.72 Aligned_cols=209 Identities=26% Similarity=0.441 Sum_probs=179.3
Q ss_pred CEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC---------------
Q ss_conf 57999389996990003512499977969999968984189999999779999961799877875---------------
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (692)
Q Consensus 97 ~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~--------------- 161 (692)
.|+++|++++|++..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCCH
T ss_conf 69999789998999988150668869979999989998299999999747667899779999993367752000023517
Q ss_pred --------EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf --------699982567568799899999963289999999999999988420010578887799999999998616900
Q 005532 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (692)
Q Consensus 162 --------~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (692)
+||||+|+|.+.+..||.+|+....... ......
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--------------------------------------~~~~~~ 123 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--------------------------------------LGLSKH 123 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--------------------------------------TCCCHH
T ss_pred HHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--------------------------------------CCCCHH
T ss_conf 679997454489983323141101021365657876--------------------------------------299989
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC---CCCCEEE
Q ss_conf 0999999770341999311145456689579999999999813999599717899999988999999872---4998399
Q 005532 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (692)
Q Consensus 234 ~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~~~tvI 310 (692)
....++.+++..+|+.+...++++.+|||||+|||+|||||+.+|++|||||||++||+.+...+.++|+ +.|.|+|
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til 203 (258)
T d1b0ua_ 124 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 203 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEE
T ss_conf 99999999999829952443068220567788898999998439987885245556887888899876554103688338
Q ss_pred EEECCHHHHHHHCCEEEEEECCEEEEECCCHHHH
Q ss_conf 9943988898444858997233377821685899
Q 005532 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 311 ivsHd~~~l~~~~~~i~~l~~G~~~~~~g~y~~~ 344 (692)
+||||++++..+||+|+++.+|++. ..|...+.
T Consensus 204 ~vtHdl~~~~~~adri~vm~~G~iv-~~g~~~ev 236 (258)
T d1b0ua_ 204 VVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQV 236 (258)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEEE-EEECHHHH
T ss_pred EEECCHHHHHHHCCEEEEEECCEEE-EECCHHHH
T ss_conf 9948999999869999999799999-98499999
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=338.91 Aligned_cols=202 Identities=26% Similarity=0.368 Sum_probs=170.9
Q ss_pred CEEEEEEEEEECC--E--ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-----------
Q ss_conf 5799938999699--0--003512499977969999968984189999999779999961799877875-----------
Q 005532 97 GVKLENISKSYKG--V--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (692)
Q Consensus 97 ~i~i~nvs~~y~~--~--~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~----------- 161 (692)
+|+++|++++|+. . .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999998576885551231
Q ss_pred ---EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf ---69998256756879989999996328999999999999998842001057888779999999999861690009999
Q 005532 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (692)
Q Consensus 162 ---~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (692)
.||||+|+|.+.+..||.||+..+... .. ............
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~---------------~~---------------------~~~~~~~~~~~~ 124 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KY---------------------RGAMSGEERRKR 124 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CC---------------------SSCCCHHHHHHH
T ss_pred HCCEEEEEECCHHHCCCCCHHHHHHHHHHH---------------HC---------------------CCCCCHHHHHHH
T ss_conf 255577880412417686688877578887---------------22---------------------478999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEEC
Q ss_conf 99770341999311145456689579999999999813999599717899999988999999872----49983999943
Q 005532 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (692)
Q Consensus 239 i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsH 314 (692)
+.+++..+|+.+...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.+.|+|+|||
T Consensus 125 ~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH 204 (230)
T d1l2ta_ 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (230)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 99988762423455348802389999999998756522788899468765469899999999999999843999999878
Q ss_pred CHHHHHHHCCEEEEEECCEEE
Q ss_conf 988898444858997233377
Q 005532 315 DRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 315 d~~~l~~~~~~i~~l~~G~~~ 335 (692)
|++.+ .+||+|+++.+|++.
T Consensus 205 d~~~a-~~~drv~~m~~G~Iv 224 (230)
T d1l2ta_ 205 DINVA-RFGERIIYLKDGEVE 224 (230)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HHCCEEEEEECCEEE
T ss_conf 88999-869989999899999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=0 Score=335.48 Aligned_cols=202 Identities=27% Similarity=0.404 Sum_probs=174.7
Q ss_pred CEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC--------EEEEECC
Q ss_conf 57999389996990003512499977969999968984189999999779999961799877875--------6999825
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (692)
Q Consensus 97 ~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~--------~i~yv~Q 168 (692)
+|+++|++++|++ .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .|||++|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECC-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECC
T ss_conf 9899989999499-788433789879989999989998299999999647688878899956734652165740561512
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 67568799899999963289999999999999988420010578887799999999998616900099999977034199
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+++..||.||+..+... .. . ....++.++++.+|+
T Consensus 80 ~~~l~~~~tV~enl~~~~~~---------------~~------------------------~---~~~~~~~~~l~~~~l 117 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRM---------------KK------------------------I---KDPKRVLDTARDLKI 117 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------HC------------------------C---CCHHHHHHHHHHTTC
T ss_pred CCCCCCCCCHHHHHHHHHHH---------------CC------------------------C---CHHHHHHHHHHHHCC
T ss_conf 11117466577888887764---------------05------------------------5---389999999998256
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHHCC
Q ss_conf 9311145456689579999999999813999599717899999988999999872----499839999439888984448
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~~ 324 (692)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++++ +.+.|||+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~d 196 (229)
T d3d31a2 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (229)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred H-HHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCC
T ss_conf 5-557589554799984014030434436771443478767998999999999999986479689997499999999699
Q ss_pred EEEEEECCEEEEECCCHHH
Q ss_conf 5899723337782168589
Q 005532 325 KIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 325 ~i~~l~~G~~~~~~g~y~~ 343 (692)
+|+.+.+|++. ..|...+
T Consensus 197 rv~vm~~G~iv-~~g~~~e 214 (229)
T d3d31a2 197 RIAVVMDGKLI-QVGKPEE 214 (229)
T ss_dssp EEEEESSSCEE-EEECHHH
T ss_pred EEEEEECCEEE-EECCHHH
T ss_conf 99999799999-9869999
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=337.23 Aligned_cols=203 Identities=26% Similarity=0.449 Sum_probs=176.3
Q ss_pred CEEEEEEEEEECCE----ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-----------
Q ss_conf 57999389996990----003512499977969999968984189999999779999961799877875-----------
Q 005532 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (692)
Q Consensus 97 ~i~i~nvs~~y~~~----~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~----------- 161 (692)
+|+++|++++|+.. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred --EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf --699982567568799899999963289999999999999988420010578887799999999998616900099999
Q 005532 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (692)
Q Consensus 162 --~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 239 (692)
.||||+|++.+.+..||+||+..... + ..........++
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~---------------~------------------------~~~~~~~~~~~v 121 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLE---------------L------------------------DNTPKDEVKRRV 121 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHH---------------T------------------------TTCCTTHHHHHH
T ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHH---------------H------------------------CCCCHHHHHHHH
T ss_conf 4166430225222799649999999999---------------8------------------------499989999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECC
Q ss_conf 9770341999311145456689579999999999813999599717899999988999999872----499839999439
Q 005532 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (692)
Q Consensus 240 ~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd 315 (692)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.+.|+|+||||
T Consensus 122 ~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd 200 (240)
T d3dhwc1 122 TELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200 (240)
T ss_dssp HHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred HHHHHHCCCC-HHHHCCHHHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 9999976990-355489434999999899986401058986874465565898885679999999986469789998389
Q ss_pred HHHHHHHCCEEEEEECCEEEEECCC
Q ss_conf 8889844485899723337782168
Q 005532 316 RAFLDQLCTKIVETEMGVSRTYEGN 340 (692)
Q Consensus 316 ~~~l~~~~~~i~~l~~G~~~~~~g~ 340 (692)
+.++..+||+|+++.+|++. ..|.
T Consensus 201 l~~~~~~~dri~vl~~G~iv-~~G~ 224 (240)
T d3dhwc1 201 MDVVKRICDCVAVISNGELI-EQDT 224 (240)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEEE
T ss_pred HHHHHHHCCEEEEEECCEEE-EECC
T ss_conf 99999869999999799999-9879
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=0 Score=332.55 Aligned_cols=221 Identities=21% Similarity=0.243 Sum_probs=180.4
Q ss_pred CCCEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-----------EE
Q ss_conf 8857999389996990003512499977969999968984189999999779999961799877875-----------69
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (692)
Q Consensus 95 ~~~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~-----------~i 163 (692)
|++|+++|++++|++.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .|
T Consensus 2 M~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi 81 (254)
T d1g6ha_ 2 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 81 (254)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CCEEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCC
T ss_conf 66699977899979968871217998899799999999984999999997797688737999999664056999998338
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99825675687998999999632899999999999999884200105788877999999999986169000999999770
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+.++.||.||+..+..... . .. +.................++.+++
T Consensus 82 ~~v~Q~~~~~~~ltv~enl~~~~~~~~---------------~----~~-------~~~~~~~~~~~~~~~~~~~~~~~l 135 (254)
T d1g6ha_ 82 VRTFQTPQPLKEMTVLENLLIGEICPG---------------E----SP-------LNSLFYKKWIPKEEEMVEKAFKIL 135 (254)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTSTT---------------S----CH-------HHHHHHCSSCCCCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEEEEEHHHHCC---------------C----CC-------HHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 725776424788742321430133303---------------4----50-------456654213532899999999998
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHH---CCCCCEEEEEECCHHHHH
Q ss_conf 34199931114545668957999999999981399959971789999998899999987---249983999943988898
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L---~~~~~tvIivsHd~~~l~ 320 (692)
+.+++. ...++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+++ ++.|.|||+||||++++.
T Consensus 136 ~~~~l~-~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~ 214 (254)
T d1g6ha_ 136 EFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL 214 (254)
T ss_dssp HHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTG
T ss_pred HHCCCC-HHCCCCHHHCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 761963-0205953569918888999999997592723243976569999999999999999978998999947699999
Q ss_pred HHCCEEEEEECCEEEEECCCHHH
Q ss_conf 44485899723337782168589
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 321 ~~~~~i~~l~~G~~~~~~g~y~~ 343 (692)
.+||+|+++.+|++. ..|...+
T Consensus 215 ~~~Drv~vm~~G~iv-~~g~~~e 236 (254)
T d1g6ha_ 215 NYIDHLYVMFNGQII-AEGRGEE 236 (254)
T ss_dssp GGCSEEEEEETTEEE-EEEESHH
T ss_pred HHCCEEEEEECCEEE-EEECHHH
T ss_conf 869999999699899-9966899
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=0 Score=325.38 Aligned_cols=215 Identities=24% Similarity=0.392 Sum_probs=165.1
Q ss_pred CCCEEEEEEEEEECCE---ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC----------
Q ss_conf 8857999389996990---003512499977969999968984189999999779999961799877875----------
Q 005532 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (692)
Q Consensus 95 ~~~i~i~nvs~~y~~~---~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~---------- 161 (692)
.+.|+++||+|+|++. .+|+|+||+|++|++++||||||||||||+++|+|+++|++|+|.++|.++
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 69998256756879989999996328999999999999998842001057888779999999999861690009999997
Q 005532 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (692)
Q Consensus 162 ~i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 241 (692)
.|+||+|+|++ ++.||++|+..+....... ......... ......+..
T Consensus 89 ~i~~v~Q~~~l-f~~tv~eni~~g~~~~~~~----~~~~~~~~~---------------------------~~~~~~i~~ 136 (251)
T d1jj7a_ 89 QVAAVGQEPQV-FGRSLQENIAYGLTQKPTM----EEITAAAVK---------------------------SGAHSFISG 136 (251)
T ss_dssp HEEEECSSCCC-CSSBHHHHHHCSCSSCCCH----HHHHHHHHH---------------------------HTCHHHHHT
T ss_pred HHHHCCCCCCC-CCCCHHHHHHHHHCCCCHH----HHHHHHHHH---------------------------HHHHHHHHH
T ss_conf 76540456500-2763465545421013027----889999999---------------------------989999985
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC----CCCEEEEEECCHH
Q ss_conf 703419993111454566895799999999998139995997178999999889999998724----9983999943988
Q 005532 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (692)
Q Consensus 242 ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~----~~~tvIivsHd~~ 317 (692)
+-. |+.+ ..++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+ .++|+|+||||++
T Consensus 137 l~~--g~~~-~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~ 213 (251)
T d1jj7a_ 137 LPQ--GYDT-EVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213 (251)
T ss_dssp STT--GGGC-BCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred CCC--CCHH-HHHCCCCCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH
T ss_conf 612--1113-6751676689547048998604456870787167576568536899999999976506989999959799
Q ss_pred HHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 89844485899723337782168589999
Q 005532 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 318 ~l~~~~~~i~~l~~G~~~~~~g~y~~~~~ 346 (692)
.+.. ||+|+++++|++. ..|.+.+.+.
T Consensus 214 ~~~~-aDrI~vl~~G~iv-~~Gt~~eLl~ 240 (251)
T d1jj7a_ 214 LVEQ-ADHILFLEGGAIR-EGGTHQQLME 240 (251)
T ss_dssp HHHT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHH-CCEEEEEECCEEE-EECCHHHHHH
T ss_conf 9985-9999999899999-9889999985
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=0 Score=328.44 Aligned_cols=208 Identities=21% Similarity=0.323 Sum_probs=170.7
Q ss_pred CCCEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-----------EE
Q ss_conf 8857999389996990003512499977969999968984189999999779999961799877875-----------69
Q 005532 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (692)
Q Consensus 95 ~~~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~-----------~i 163 (692)
+.+|+++|++++|++..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CEEEEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
T ss_conf 60799961899989988883025788899799999999985999999996788888038984244344660888887423
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99825675687998999999632899999999999999884200105788877999999999986169000999999770
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|++.+++..||+||+....... .........+..++
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~~----------------------------------------~~~~~~~~~~~~~~ 123 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYNR----------------------------------------KDKEGIKRDLEWIF 123 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTTC----------------------------------------CCSSHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHC----------------------------------------CCHHHHHHHHHHHH
T ss_conf 55676554577636999999888732----------------------------------------78889999999999
Q ss_pred HHC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC---CCCCEEEEEECCHHHH
Q ss_conf 341-999311145456689579999999999813999599717899999988999999872---4998399994398889
Q 005532 244 PEL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (692)
Q Consensus 244 ~~l-gl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~~~tvIivsHd~~~l 319 (692)
..+ ++ .+..++++.+|||||||||+|||||+.+|++|||||||+|||+.++.++.++++ +.|+|||++|||++++
T Consensus 124 ~~~~~l-~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~ 202 (240)
T d1ji0a_ 124 SLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA 202 (240)
T ss_dssp HHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred HHHHCH-HHHHHCCHHHCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHH
T ss_conf 874176-8887585433899999999999999829987400398867999999999999999996899899995889999
Q ss_pred HHHCCEEEEEECCEEEEECCCHHHH
Q ss_conf 8444858997233377821685899
Q 005532 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (692)
Q Consensus 320 ~~~~~~i~~l~~G~~~~~~g~y~~~ 344 (692)
..+||+|+++.+|++. +.|...+.
T Consensus 203 ~~~~drv~vl~~G~iv-~~g~~~el 226 (240)
T d1ji0a_ 203 LKVAHYGYVLETGQIV-LEGKASEL 226 (240)
T ss_dssp HHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHHCCEEEEEECCEEE-EECCHHHH
T ss_conf 9969999999899999-98489998
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=0 Score=324.33 Aligned_cols=206 Identities=26% Similarity=0.389 Sum_probs=176.9
Q ss_pred CEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC---------CEEEEEC
Q ss_conf 5799938999699000351249997796999996898418999999977999996179987787---------5699982
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (692)
Q Consensus 97 ~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~---------~~i~yv~ 167 (692)
+|+++|++++|+++++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..++|+|
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEEEEEEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEEE
T ss_conf 78999589999999998062568848979999999999999999999669887888799986724468398872186750
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 56756879989999996328999999999999998842001057888779999999999861690009999997703419
Q 005532 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (692)
Q Consensus 168 Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lg 247 (692)
|++.+.++.|+.||+..... +. ..........++.++..++
T Consensus 82 q~~~~~~~ltv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~ 122 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAG---------------FY------------------------ASSSSEIEEMVERATEIAG 122 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHH---------------HH------------------------CCCHHHHHHHHHHHHHHHC
T ss_pred ECCCCCCCCCHHHHHHHHHH---------------HC------------------------CCCHHHHHHHHHHHHHHCC
T ss_conf 01546878667788898998---------------61------------------------7998999999999998679
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC---CCCCEEEEEECCHHHHHHHCC
Q ss_conf 99311145456689579999999999813999599717899999988999999872---499839999439888984448
Q 005532 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 248 l~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~---~~~~tvIivsHd~~~l~~~~~ 324 (692)
+. +..++++.+||||||||++|||||+.+|++|||||||+|||+.++..+.++++ +.|+|||++|||++++..+||
T Consensus 123 l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~d 201 (238)
T d1vpla_ 123 LG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 201 (238)
T ss_dssp CG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred CH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
T ss_conf 78-88850453379989899999999865999887337988979899999999999999659989999598999999699
Q ss_pred EEEEEECCEEEEECCCHHH
Q ss_conf 5899723337782168589
Q 005532 325 KIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 325 ~i~~l~~G~~~~~~g~y~~ 343 (692)
+|+.+.+|++. +.|..++
T Consensus 202 rv~vl~~G~iv-~~g~~~e 219 (238)
T d1vpla_ 202 RIALIHNGTIV-ETGTVEE 219 (238)
T ss_dssp EEEEEETTEEE-EEEEHHH
T ss_pred EEEEEECCEEE-EECCHHH
T ss_conf 99999899999-9928999
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=324.39 Aligned_cols=211 Identities=23% Similarity=0.396 Sum_probs=162.9
Q ss_pred EEEEEEEEEECC--EECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC----------EEEE
Q ss_conf 799938999699--0003512499977969999968984189999999779999961799877875----------6999
Q 005532 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (692)
Q Consensus 98 i~i~nvs~~y~~--~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~----------~i~y 165 (692)
|+++|++|+|+. .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.++ .|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEEE
T ss_conf 29999999908999603742489984999999999999989999999973578888899999999440024655352889
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 82567568799899999963289999999999999988420010578887799999999998616900099999977034
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
|+|+|++ ++.||++|+..+.... . .+.+..+++.+ .+...+..+ .
T Consensus 82 v~Q~~~l-f~~Ti~eNi~~~~~~~-~----~~~~~~~~~~~---------------------------~~~~~i~~~--~ 126 (241)
T d2pmka1 82 VLQDNVL-LNRSIIDNISLANPGM-S----VEKVIYAAKLA---------------------------GAHDFISEL--R 126 (241)
T ss_dssp ECSSCCC-TTSBHHHHHCTTSTTC-C----HHHHHHHHHHH---------------------------TCHHHHTTS--T
T ss_pred EECCCCC-CCCCCCCCCCCCCCCC-C----HHHHHHHHHHH---------------------------HHHHHHHHH--H
T ss_conf 8244655-7840003522357554-3----88899999997---------------------------557888763--2
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHHHHHHC
Q ss_conf 19993111454566895799999999998139995997178999999889999998724--9983999943988898444
Q 005532 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (692)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~l~~~~ 323 (692)
.|+.+ .....+..|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+|||+++.+. .|
T Consensus 127 ~~~~t-~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~ 204 (241)
T d2pmka1 127 EGYNT-IVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NA 204 (241)
T ss_dssp TGGGS-BCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TS
T ss_pred CCHHH-HCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HC
T ss_conf 01344-32787886698898987544344416513556477655598999999999999858998999978899998-49
Q ss_pred CEEEEEECCEEEEECCCHHHHHH
Q ss_conf 85899723337782168589999
Q 005532 324 TKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 324 ~~i~~l~~G~~~~~~g~y~~~~~ 346 (692)
|+|+++++|++. ..|.+.+.+.
T Consensus 205 D~i~vl~~G~Iv-~~G~~~ell~ 226 (241)
T d2pmka1 205 DRIIVMEKGKIV-EQGKHKELLS 226 (241)
T ss_dssp SEEEEEETTEEE-EEECHHHHHH
T ss_pred CEEEEEECCEEE-EECCHHHHHH
T ss_conf 999999899999-9889999982
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=0 Score=321.09 Aligned_cols=214 Identities=24% Similarity=0.393 Sum_probs=165.1
Q ss_pred CCEEEEEEEEEECCE--ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC----------EE
Q ss_conf 857999389996990--003512499977969999968984189999999779999961799877875----------69
Q 005532 96 SGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (692)
Q Consensus 96 ~~i~i~nvs~~y~~~--~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~----------~i 163 (692)
+.|+++||+|+|++. ++|+++||+|++|++++||||||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 91 (253)
T d3b60a1 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 91 (253)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred EEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHEE
T ss_conf 07999988999299997635332899859999999999998599999998621688846898788012111066542068
Q ss_pred EEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
Q ss_conf 99825675687998999999632899999999999999884200105788877999999999986169000999999770
Q 005532 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (692)
Q Consensus 164 ~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll 243 (692)
+|++|+|++ ++.|+++|+..+...... .+.+..+++.+ .+...+..+
T Consensus 92 ~~v~Q~~~l-~~~ti~~n~~~~~~~~~~----~~~i~~a~~~~---------------------------~l~~~i~~l- 138 (253)
T d3b60a1 92 ALVSQNVHL-FNDTVANNIAYARTEEYS----REQIEEAARMA---------------------------YAMDFINKM- 138 (253)
T ss_dssp EEECSSCCC-CSSBHHHHHHTTTTSCCC----HHHHHHHHHTT---------------------------TCHHHHHHS-
T ss_pred EEEEECCCC-CCCCHHHHHHHCCCCCCC----HHHHHHHHHHH---------------------------HHHHHHHHC-
T ss_conf 799502544-786202433205722089----99999999998---------------------------179999735-
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHHHHH
Q ss_conf 3419993111454566895799999999998139995997178999999889999998724--99839999439888984
Q 005532 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~l~~ 321 (692)
+ -|+.+.. ...+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+||||++.+.
T Consensus 139 ~-~gl~t~~-~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 215 (253)
T d3b60a1 139 D-NGLDTII-GENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE- 215 (253)
T ss_dssp T-TGGGSBC-CTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-
T ss_pred C-CCCHHHH-CCCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-
T ss_conf 5-4410143-488898499999999999999549988995164445898899999999987522788999988799998-
Q ss_pred HCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 4485899723337782168589999
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 322 ~~~~i~~l~~G~~~~~~g~y~~~~~ 346 (692)
.||+|+++++|++. ..|++.+.+.
T Consensus 216 ~~D~v~vl~~G~Iv-~~G~~~eLl~ 239 (253)
T d3b60a1 216 QADEIVVVEDGIIV-ERGTHSELLA 239 (253)
T ss_dssp TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred HCCEEEEEECCEEE-EECCHHHHHH
T ss_conf 59999999899999-9889999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=0 Score=316.19 Aligned_cols=204 Identities=25% Similarity=0.395 Sum_probs=178.5
Q ss_pred CEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC--------------
Q ss_conf 528999579991992010010289947978999928999489999999169899713899877532--------------
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------- 488 (692)
Q Consensus 423 ~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~-------------- 488 (692)
..|+++||++.|++..+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CCEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEECCCCHHHHCCCCCC
T ss_conf 81899869999899999856066886998999999999809999999964878898989999998035664442453225
Q ss_pred EEEEECCCCHHHCCCCCCHHHHHHHHHCCC--C----HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 000221320110698844999999971104--4----9999999844699932001367989978999999999863699
Q 005532 489 LPNYFEQNQAEALDLDKTVLETVAEAAEDW--R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 489 ~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~--~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p 562 (692)
..+|+.|+. .+.+..|+.+++......+ . ...+..++..+++. +..++++.+||||||||++|||||+.+|
T Consensus 82 ~ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P 158 (240)
T d1g2912 82 DIAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKP 158 (240)
T ss_dssp SEEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCC
T ss_pred CCEECCCCH--HHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 512002212--2231011667633068772999899999999999875996-6762993349999999999999982699
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 679984788999988799999999742----95699991698889843668999979979770699268999
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 563 ~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
+||||||||++||+.+...+.+.|++. +.|+|+||||.+++..+||+|++|++|++... |..++.+.
T Consensus 159 ~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~-G~~~el~~ 229 (240)
T d1g2912 159 QVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV-GSPDEVYD 229 (240)
T ss_dssp SEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEE-ECHHHHHH
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEEE-CCHHHHHH
T ss_conf 889825887656989998999999999863698899995999999996999999989999998-59999982
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=0 Score=319.32 Aligned_cols=214 Identities=27% Similarity=0.445 Sum_probs=165.2
Q ss_pred CCCEEEEEEEEEECC--EECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC----------E
Q ss_conf 885799938999699--0003512499977969999968984189999999779999961799877875----------6
Q 005532 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (692)
Q Consensus 95 ~~~i~i~nvs~~y~~--~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~----------~ 162 (692)
.+.|+++|++|+|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.+++.++ .
T Consensus 14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHE
T ss_conf 88799998899959999760644389983998999988999809999999971278630001539987530788886341
Q ss_pred EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
Q ss_conf 99982567568799899999963289999999999999988420010578887799999999998616900099999977
Q 005532 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (692)
Q Consensus 163 i~yv~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 242 (692)
|+||+|++++ ++.||+||+..+..... .+++.++++.+ .+...+..+
T Consensus 94 i~~v~Q~~~l-f~~Ti~eNi~~g~~~~~-----~~~~~~al~~~---------------------------~l~~~i~~l 140 (255)
T d2hyda1 94 IGLVQQDNIL-FSDTVKENILLGRPTAT-----DEEVVEAAKMA---------------------------NAHDFIMNL 140 (255)
T ss_dssp EEEECSSCCC-CSSBHHHHHGGGCSSCC-----HHHHHHHHHHT---------------------------TCHHHHHTS
T ss_pred EEEEECCCCC-CCCCHHHHHHCCCCCCC-----HHHHHHHHHHH---------------------------CCHHHHHHC
T ss_conf 4565101568-99879999851586799-----99999999996---------------------------979999736
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHHHH
Q ss_conf 03419993111454566895799999999998139995997178999999889999998724--9983999943988898
Q 005532 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (692)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~l~ 320 (692)
-. |+.+...+ ...+||||||||++|||||+.+|+||||||||++||+.+...+.+.|.+ .++|+|+|||+++.+.
T Consensus 141 p~--gl~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~ 217 (255)
T d2hyda1 141 PQ--GYDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 217 (255)
T ss_dssp TT--GGGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT
T ss_pred CC--CCCCHHCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 24--20103338-8898499999999999998559989998376544797799999999998753888999968999998
Q ss_pred HHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 44485899723337782168589999
Q 005532 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 321 ~~~~~i~~l~~G~~~~~~g~y~~~~~ 346 (692)
.||+|+++++|++. ..|.+.+.+.
T Consensus 218 -~~D~ii~l~~G~iv-~~G~~~eLl~ 241 (255)
T d2hyda1 218 -HADKIVVIENGHIV-ETGTHRELIA 241 (255)
T ss_dssp -TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred -HCCEEEEEECCEEE-EECCHHHHHH
T ss_conf -59999999899999-9889999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=0 Score=316.06 Aligned_cols=203 Identities=28% Similarity=0.430 Sum_probs=179.0
Q ss_pred EEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE--------EEEECC
Q ss_conf 289995799919920100102899479789999289994899999991698997138998775320--------002213
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (692)
Q Consensus 424 ~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~--------~~~~~q 495 (692)
.|+++|++++|++..+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 6 ~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q 85 (239)
T d1v43a3 6 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 85 (239)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCEEEEEEE
T ss_conf 49998799999999998130678879989999999998299999999758999878799916413547700015899800
Q ss_pred CCHHHCCCCCCHHHHHHHHHCC--CC----HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 2011069884499999997110--44----99999998446999320013679899789999999998636996799847
Q 005532 496 NQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDE 569 (692)
Q Consensus 496 ~~~~~l~~~~t~~~~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDE 569 (692)
+. .+.+..|+.+++...... +. ...+..+|..+++. ...++++.+||||||||++|||||+.+|+||||||
T Consensus 86 ~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDE 162 (239)
T d1v43a3 86 SY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDE 162 (239)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred CH--HHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHCCCCCCEEECC
T ss_conf 33--5342220999999999873999999999999999875985-56609954699999889999766404998243068
Q ss_pred CCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 88999988799999999742----95699991698889843668999979979770699268999
Q 005532 570 PTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 570 PTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
||++||+.+...+.+.|++. +.|+|+||||.+++..+||+|++|++|++.. .|+-++.+.
T Consensus 163 Pts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el~~ 226 (239)
T d1v43a3 163 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQ-IGSPTEVYL 226 (239)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHH
T ss_conf 8666898999899999999987319807999489999998699999998999999-859999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=0 Score=325.95 Aligned_cols=211 Identities=21% Similarity=0.375 Sum_probs=160.6
Q ss_pred CEEEEEEEEEECC-EECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC----------CEEEE
Q ss_conf 5799938999699-000351249997796999996898418999999977999996179987787----------56999
Q 005532 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (692)
Q Consensus 97 ~i~i~nvs~~y~~-~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~----------~~i~y 165 (692)
+|+++||+|+|++ .++|+||||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 97999889987999841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 82567568799899999963289999999999999988420010578887799999999998616900099999977034
Q 005532 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (692)
Q Consensus 166 v~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~ 245 (692)
|+|+|.+ ++.||+||+.......... +.+...++.+. . ...+..
T Consensus 81 v~Q~~~l-f~~ti~eNi~~~~~~~~~~----~~~~~~~~~~~------------------------~-------~~~~~~ 124 (242)
T d1mv5a_ 81 VSQDSAI-MAGTIRENLTYGLEGDYTD----EDLWQVLDLAF------------------------A-------RSFVEN 124 (242)
T ss_dssp ECCSSCC-CCEEHHHHTTSCTTSCSCH----HHHHHHHHHHT------------------------C-------TTTTTS
T ss_pred ECCCCCC-CCCCHHHHEECCCCCCCCH----HHHHHHHHHHH------------------------H-------HHHHCC
T ss_conf 7566545-7853454301244555423----56778999997------------------------5-------554203
Q ss_pred --CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHHHHH
Q ss_conf --19993111454566895799999999998139995997178999999889999998724--99839999439888984
Q 005532 246 --LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 246 --lgl~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~l~~ 321 (692)
.++.+..+ ....+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .++|+|+|||+++.+..
T Consensus 125 ~~~~~~~~i~-~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 203 (242)
T d1mv5a_ 125 MPDQLNTEVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD 203 (242)
T ss_dssp STTGGGCEES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH
T ss_pred CCCCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH
T ss_conf 7421015236-878987999999999999985299899965886556988999998878887179989999787999984
Q ss_pred HCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 4485899723337782168589999
Q 005532 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (692)
Q Consensus 322 ~~~~i~~l~~G~~~~~~g~y~~~~~ 346 (692)
||+|+++++|++. ..|.+.+.+.
T Consensus 204 -~D~i~vl~~G~iv-~~G~~~eLl~ 226 (242)
T d1mv5a_ 204 -ADKIYFIEKGQIT-GSGKHNELVA 226 (242)
T ss_dssp -CSEEEEEETTEEC-CCSCHHHHHH
T ss_pred -CCEEEEEECCEEE-EECCHHHHHH
T ss_conf -9999999899999-9999999986
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=0 Score=316.72 Aligned_cols=202 Identities=27% Similarity=0.429 Sum_probs=177.8
Q ss_pred EEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC--------EEEEECCC
Q ss_conf 8999579991992010010289947978999928999489999999169899713899877532--------00022132
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (692)
Q Consensus 425 i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~--------~~~~~~q~ 496 (692)
|+++||+++|++..+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ ..+|+.|+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCEEEEECCC
T ss_conf 99999999989999981117788699899999899982999999996587888888999999778886444322234334
Q ss_pred CHHHCCCCCCHHHHHHHHHCCC------CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECC
Q ss_conf 0110698844999999971104------4999999984469993200136798997899999999986369967998478
Q 005532 497 QAEALDLDKTVLETVAEAAEDW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEP 570 (692)
Q Consensus 497 ~~~~l~~~~t~~~~~~~~~~~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEP 570 (692)
. .+.+..|+.+++....... ....+..+|..+++. +..++++.+||||||||++|||||+.+|++||||||
T Consensus 81 ~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEP 157 (232)
T d2awna2 81 Y--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 157 (232)
T ss_dssp C--CC---------------------CHHHHHHHHHHHHC----------------------CHHHHHHTCCSEEEEEST
T ss_pred C--CCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 2--0264333788978999875998899999999999757886-566489656999999999999997039988997588
Q ss_pred CCCCCHHHHHHHHHHHHH----CCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 899998879999999974----295699991698889843668999979979770699268999
Q 005532 571 TNHLDIPSKEMLEEAISE----YKGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 571 Tn~LD~~s~~~l~~~L~~----~~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
|++||+.+...+.+.|.+ .+.|+|+||||.+++..+||++++|++|++.. .|..++.+.
T Consensus 158 ts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~-~G~~~el~~ 220 (232)
T d2awna2 158 LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQ-VGKPLELYH 220 (232)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-EECHHHHHH
T ss_conf 878898899899999999987429879999489999999699999997999999-808999973
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-45 Score=311.68 Aligned_cols=204 Identities=24% Similarity=0.362 Sum_probs=177.3
Q ss_pred EEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE--------------
Q ss_conf 289995799919920100102899479789999289994899999991698997138998775320--------------
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (692)
Q Consensus 424 ~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~-------------- 489 (692)
.|+++|++++|++..++++|||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEECCEEECCCCCCCHHCCCCCH
T ss_conf 69999789998999988150668869979999989998299999999747667899779999993367752000023517
Q ss_pred ---------EEEECCCCHHHCCCCCCHHHHHHHHH---CCCC----HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf ---------00221320110698844999999971---1044----9999999844699932001367989978999999
Q 005532 490 ---------PNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLA 553 (692)
Q Consensus 490 ---------~~~~~q~~~~~l~~~~t~~~~~~~~~---~~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~ 553 (692)
.+|+.|+. .+.+..++.+++.... ..+. ...+..++..+++.....++.+.+||||||||++
T Consensus 82 ~~~~~~r~~ig~vfQ~~--~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~ 159 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVS 159 (258)
T ss_dssp HHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHH
T ss_pred HHHHHHHCCEEEEEECH--HHCCCHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHH
T ss_conf 67999745448998332--3141101021365657876299989999999999998299524430682205677888989
Q ss_pred HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 999863699679984788999988799999999742---95699991698889843668999979979770699268999
Q 005532 554 FCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 554 LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~---~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
|||+|+.+|+||||||||++||+.+...+.+.|++. +.|+|+||||++.+..+||||++|.+|++.. .|+.++.+.
T Consensus 160 iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~-~g~~~ev~~ 238 (258)
T d1b0ua_ 160 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEE-EGDPEQVFG 238 (258)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred HHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHH
T ss_conf 9999843998788524555688788889987655410368833899489999998699999997999999-849999983
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-45 Score=311.03 Aligned_cols=194 Identities=26% Similarity=0.401 Sum_probs=169.2
Q ss_pred EEEEEEEEEECCC--E--ECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------
Q ss_conf 2899957999199--2--0100102899479789999289994899999991698997138998775320----------
Q 005532 424 VVTIKNLEFGYED--R--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~i~~~~v~~~y~~--~--~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+|+++||++.|+. . .+++++||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCCCCCCCEEEECCEECCCCCHHHCCHH
T ss_conf 98999079994899820898713377884997999988999982165575068877776626999998576885551231
Q ss_pred ----EEEECCCCHHHCCCCCCHHHHHHHHHC-----CCC----HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf ----002213201106988449999999711-----044----9999999844699932001367989978999999999
Q 005532 490 ----PNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 ----~~~~~q~~~~~l~~~~t~~~~~~~~~~-----~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LAr 556 (692)
.+|+.|+. .+.+..++.+++..... .+. ...+...|+.+++.....++.+.+||||||||++|||
T Consensus 81 r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAr 158 (230)
T d1l2ta_ 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIAR 158 (230)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred HCCEEEEEECCH--HHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCCHHHCCHHHHHHHHHHH
T ss_conf 255577880412--417686688877578887224789999999999998876242345534880238999999999875
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEE
Q ss_conf 863699679984788999988799999999742----9569999169888984366899997997977
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQD 620 (692)
Q Consensus 557 all~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~ 620 (692)
||+.+|+||||||||++||+.+...+.+.|+++ +.|+|+||||.+++ ++||||++|++|++..
T Consensus 159 aL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~ 225 (230)
T d1l2ta_ 159 ALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVER 225 (230)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEE
T ss_pred HHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCHHHH-HHCCEEEEEECCEEEE
T ss_conf 652278889946876546989999999999999984399999987888999-8699899998999999
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.4e-45 Score=310.50 Aligned_cols=202 Identities=28% Similarity=0.432 Sum_probs=178.0
Q ss_pred EEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE--------EEEECC
Q ss_conf 289995799919920100102899479789999289994899999991698997138998775320--------002213
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQ 495 (692)
Q Consensus 424 ~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~--------~~~~~q 495 (692)
+|+++|++++|++ ..++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. .+|+.|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECC-EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHCCEEECC
T ss_conf 9899989999499-788433789879989999989998299999999647688878899956734652165740561512
Q ss_pred CCHHHCCCCCCHHHHHHHHHC---CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 201106988449999999711---04499999998446999320013679899789999999998636996799847889
Q 005532 496 NQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (692)
Q Consensus 496 ~~~~~l~~~~t~~~~~~~~~~---~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn 572 (692)
+. .+.+..|+.+|+..... ......+...+..+++. +..++++.+||||||||++|||||+.+|++|||||||+
T Consensus 80 ~~--~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts 156 (229)
T d3d31a2 80 NY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156 (229)
T ss_dssp TC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSST
T ss_pred CC--CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCH-HHHHCCHHHCCHHHHCCHHHHHHHHCCCCCEEECCCCC
T ss_conf 11--1174665778888877640553899999999982565-55758955479998401403043443677144347876
Q ss_pred CCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 99988799999999742----95699991698889843668999979979770699268999
Q 005532 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 573 ~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
+||+.+...+.+.|++. +.|+|+||||.+.+..+||+|++|.+|++.. .|+.++.+.
T Consensus 157 ~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~-~g~~~el~~ 217 (229)
T d3d31a2 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQ-VGKPEEIFE 217 (229)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEE-EECHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHH
T ss_conf 7998999999999999986479689997499999999699999997999999-869999986
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=310.79 Aligned_cols=204 Identities=25% Similarity=0.465 Sum_probs=169.1
Q ss_pred EEEEEEEEECC--CEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------EEE
Q ss_conf 89995799919--920100102899479789999289994899999991698997138998775320----------002
Q 005532 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 425 i~~~~v~~~y~--~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
|+++||+|+|+ .+++|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred EEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCEEEECCEEECCCCHHHHHCEEEE
T ss_conf 29999999908999603742489984999999999999989999999973578888899999999440024655352889
Q ss_pred ECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCC----------CCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 21320110698844999999971104499999998446999----------32001367989978999999999863699
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 493 ~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSgGqkqrl~LArall~~p 562 (692)
++|++ .+ +..|+.+|+.........+++...+...++. ..........||||||||++|||||+++|
T Consensus 82 v~Q~~--~l-f~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p 158 (241)
T d2pmka1 82 VLQDN--VL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 158 (241)
T ss_dssp ECSSC--CC-TTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EECCC--CC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 82446--55-7840003522357554388899999997557888763201344327878866988989875443444165
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHHHH
Q ss_conf 679984788999988799999999742--95699991698889843668999979979770699268999849
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKNL 633 (692)
Q Consensus 563 ~iLlLDEPTn~LD~~s~~~l~~~L~~~--~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~~~ 633 (692)
+||||||||++||..+...+.+.|++. +.|+|+||||.+++. .||+|++|++|++.. .|++++.+....
T Consensus 159 ~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~Iv~-~G~~~ell~~~~ 229 (241)
T d2pmka1 159 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVE-QGKHKELLSEPE 229 (241)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEE-EECHHHHHHSTT
T ss_pred CHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHH-HCCEEEEEECCEEEE-ECCHHHHHHCCC
T ss_conf 13556477655598999999999999858998999978899998-499999998999999-889999982998
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-45 Score=309.62 Aligned_cols=201 Identities=25% Similarity=0.364 Sum_probs=174.9
Q ss_pred EEEEEEEEEECCCE----ECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------
Q ss_conf 28999579991992----0100102899479789999289994899999991698997138998775320----------
Q 005532 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 424 ~i~~~~v~~~y~~~----~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~---------- 489 (692)
+|+++|+++.|+.. .+++++||+|++||.+||+|+||||||||+++|+|+++|++|+|.++|.++.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEEEEEEECCCCEEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEECCEEEEECCHHHHHHH
T ss_conf 97998279996999814898615057886997999989998988899998758863667732886768520875551155
Q ss_pred ---EEEECCCCHHHCCCCCCHHHHHHHHHC--CCC----HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf ---002213201106988449999999711--044----99999998446999320013679899789999999998636
Q 005532 490 ---PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK 560 (692)
Q Consensus 490 ---~~~~~q~~~~~l~~~~t~~~~~~~~~~--~~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~ 560 (692)
.+|+.|+. ++.+..++.+++..... .+. ...+..+|..+|+. +..++++.+||||||||++|||||+.
T Consensus 81 rr~ig~VfQ~~--~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~ 157 (240)
T d3dhwc1 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALAS 157 (240)
T ss_dssp HHHEEECCSSC--CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHT
T ss_pred HCCCCCCCCCC--CCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC-HHHHCCHHHCCHHHHHHHHHHHHHCC
T ss_conf 41664302252--2279964999999999984999899999999999976990-35548943499999989998640105
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHH
Q ss_conf 99679984788999988799999999742----956999916988898436689999799797706992689
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYY 628 (692)
Q Consensus 561 ~p~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y 628 (692)
+|++|||||||++||+.+...+.+.|++. +.|+|+||||..++..+||||++|++|++.. .|+.++.
T Consensus 158 ~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~-~G~~~ei 228 (240)
T d3dhwc1 158 NPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIE-QDTVSEV 228 (240)
T ss_dssp CCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEE-EEETTTT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCEEEEEECCEEEE-ECCHHHH
T ss_conf 8986874465565898885679999999986469789998389999998699999997999999-8799999
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.4e-45 Score=309.86 Aligned_cols=203 Identities=27% Similarity=0.411 Sum_probs=176.5
Q ss_pred EEEEEEEEEECC--CEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC-------------
Q ss_conf 289995799919--92010010289947978999928999489999999169899713899877532-------------
Q 005532 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (692)
Q Consensus 424 ~i~~~~v~~~y~--~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~------------- 488 (692)
.|+++|+++.|+ ...+++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEEEEEEECCCCEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEEEECCCHHHCCHHHC
T ss_conf 89997579998899989980407898799899999899980999999997586888745999999951373111531204
Q ss_pred EEEEECCCCHHHCCCCCCHHHHHHHHHCC--CC----HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
Q ss_conf 00022132011069884499999997110--44----9999999844699932001367989978999999999863699
Q 005532 489 LPNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPS 562 (692)
Q Consensus 489 ~~~~~~q~~~~~l~~~~t~~~~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p 562 (692)
..+|+.|+. .+.+..|+.||+...... +. ...+..+++.+++. +..++.+.+||||||||++|||||+.+|
T Consensus 83 ~ig~vfQ~~--~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred CCEEEECCC--CCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHH-HHHHCCHHHCCHHHHHHHHHHHHHHHCC
T ss_conf 514773043--3466665777766556761379999999999998665917-6664895459999985899875776046
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 679984788999988799999999742----95699991698889843668999979979770699268999
Q 005532 563 TLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 563 ~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
+||||||||++||+.+...+.+.|++. +.|+|+||||.+++..+||+|++|++|++.. .|.-.+.+.
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~-~g~~~el~~ 230 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQ-VGKPEDLYD 230 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHH
T ss_conf 61454478667998998899899999986359879999799999999699999998999999-869999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-45 Score=312.54 Aligned_cols=200 Identities=28% Similarity=0.392 Sum_probs=169.9
Q ss_pred CEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC--------CEEEEECC
Q ss_conf 5799938999699000351249997796999996898418999999977999996179987787--------56999825
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (692)
Q Consensus 97 ~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~--------~~i~yv~Q 168 (692)
.|++ ++.+.|++..+ |+||++. +++++|+||||||||||+++|+|+++|++|+|.++|.+ ..||||+|
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q 77 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEE-EEEEEECCEEE--EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECC
T ss_conf 7999-99999899999--9999749-979999979998099999999739998962899999998869989928522523
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 67568799899999963289999999999999988420010578887799999999998616900099999977034199
Q 005532 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (692)
Q Consensus 169 ~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl 248 (692)
++.+.+..||+||+..+... ......++++.++++.+|+
T Consensus 78 ~~~l~~~ltV~enl~~~l~~-----------------------------------------~~~~~~~~~v~~~l~~~gl 116 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGI 116 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTC
T ss_pred CHHHCCCCHHHHHHHHHHCC-----------------------------------------CCHHHHHHHHHHHHHHCCC
T ss_conf 14435220155766653233-----------------------------------------6778899999999986383
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHHCC
Q ss_conf 9311145456689579999999999813999599717899999988999999872----499839999439888984448
Q 005532 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (692)
Q Consensus 249 ~~~~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~~ 324 (692)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++++ +.+.|+|+||||++.+..+||
T Consensus 117 ~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~ad 195 (240)
T d2onka1 117 A-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp T-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred H-HHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCC
T ss_conf 7-566579444899998999998777516770675286555887999999999999987439769998189999999699
Q ss_pred EEEEEECCEEEEECCCHHH
Q ss_conf 5899723337782168589
Q 005532 325 KIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 325 ~i~~l~~G~~~~~~g~y~~ 343 (692)
+|+++.+|++. ..|...+
T Consensus 196 ri~vm~~G~ii-~~G~~~e 213 (240)
T d2onka1 196 EVAVMLNGRIV-EKGKLKE 213 (240)
T ss_dssp EEEEEETTEEE-EEECHHH
T ss_pred EEEEEECCEEE-EEECHHH
T ss_conf 99999899999-9906999
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=7e-45 Score=306.41 Aligned_cols=206 Identities=21% Similarity=0.310 Sum_probs=172.8
Q ss_pred CCCEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE-----------
Q ss_conf 875289995799919920100102899479789999289994899999991698997138998775320-----------
Q 005532 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (692)
Q Consensus 421 ~~~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~----------- 489 (692)
.+.+|+++|++++|++..+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred CCEEEEEEEEEEEECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCCCCCHHHHHHHC
T ss_conf 56079996189998998888302578889979999999998599999999678888803898424434466088888742
Q ss_pred EEEECCCCHHHCCCCCCHHHHHHHHHCCCC-----HHHHHHHHHHC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCC
Q ss_conf 002213201106988449999999711044-----99999998446-999320013679899789999999998636996
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWR-----IDDIKGLLGRC-NFKADMLDRKVSLLSGGEKARLAFCKFMVKPST 563 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~-----~~~~~~~L~~~-~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~ 563 (692)
.+|.+|+ ..+.+..|+.+++......+. ...+...+..+ ++ ....++++.+||||||||++|||||+.+|+
T Consensus 83 i~~~~q~--~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~ 159 (240)
T d1ji0a_ 83 IALVPEG--RRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIGRALMSRPK 159 (240)
T ss_dssp EEEECSS--CCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHHHHHTTCCS
T ss_pred CCCCCCC--CCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCH-HHHHHCCHHHCCHHHHHHHHHHHHHHHCCC
T ss_conf 3556765--5457763699999988873278889999999999874176-888758543389999999999999982998
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 79984788999988799999999742---95699991698889843668999979979770699268999
Q 005532 564 LLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 564 iLlLDEPTn~LD~~s~~~l~~~L~~~---~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
+|||||||++||+.+...+.+.|++. +.|+|+||||.+++..+||||++|++|++.. .|+.++...
T Consensus 160 lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~el~~ 228 (240)
T d1ji0a_ 160 LLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVL-EGKASELLD 228 (240)
T ss_dssp EEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EEEHHHHHT
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHC
T ss_conf 740039886799999999999999999689989999588999999699999998999999-848999842
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.4e-44 Score=302.77 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=176.0
Q ss_pred EEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCC---------EEEEEC
Q ss_conf 28999579991992010010289947978999928999489999999169899713899877532---------000221
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFE 494 (692)
Q Consensus 424 ~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~---------~~~~~~ 494 (692)
.|+++|++++|+++.+++++||+|.+|+++||+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEEEEEEECCEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHHHHEEEEE
T ss_conf 78999589999999998062568848979999999999999999999669887888799986724468398872186750
Q ss_pred CCCHHHCCCCCCHHHHHHHHHCC--CC----HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 32011069884499999997110--44----9999999844699932001367989978999999999863699679984
Q 005532 495 QNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD 568 (692)
Q Consensus 495 q~~~~~l~~~~t~~~~~~~~~~~--~~----~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLD 568 (692)
|. ..+.+..++.+++...... .. ...+...+..+++. ...++++.+||||||||++|||+|+.+|++||||
T Consensus 82 q~--~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLD 158 (238)
T d1vpla_ 82 EE--AGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILD 158 (238)
T ss_dssp TT--CCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EC--CCCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEC
T ss_conf 01--54687866778889899861799899999999999867978-8885045337998989999999986599988733
Q ss_pred CCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 788999988799999999742---95699991698889843668999979979770699268999
Q 005532 569 EPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 569 EPTn~LD~~s~~~l~~~L~~~---~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
|||++||+.+...+.++|++. +.|||++|||.+++..+||+|++|++|++.. .|+.++...
T Consensus 159 EPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~-~g~~~el~~ 222 (238)
T d1vpla_ 159 EPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE-TGTVEELKE 222 (238)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEE-EEEHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-ECCHHHHHH
T ss_conf 7988979899999999999999659989999598999999699999998999999-928999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=4.2e-45 Score=307.57 Aligned_cols=206 Identities=25% Similarity=0.441 Sum_probs=172.9
Q ss_pred CCEEEEEEEEEECCC--EECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------
Q ss_conf 752899957999199--20100102899479789999289994899999991698997138998775320----------
Q 005532 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL---------- 489 (692)
Q Consensus 422 ~~~i~~~~v~~~y~~--~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~---------- 489 (692)
++-|+++||+|+|++ .++|+++||+|++|+++||+|+||||||||+++|.|+++|++|+|.++|.++.
T Consensus 14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCEEEEEEEEEEECCCCCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCEECCCCCHHHHHHE
T ss_conf 88799998899959999760644389983998999988999809999999971278630001539987530788886341
Q ss_pred EEEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCC----------CCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 002213201106988449999999711044999999984469993----------2001367989978999999999863
Q 005532 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 490 ~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~~~L~~~~l~~----------~~~~~~~~~LSgGqkqrl~LArall 559 (692)
.+|+.|+. . .+..|+.+|+.........+++...+..+++.. ........+||||||||++|||||+
T Consensus 94 i~~v~Q~~--~-lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~ 170 (255)
T d2hyda1 94 IGLVQQDN--I-LFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFL 170 (255)
T ss_dssp EEEECSSC--C-CCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCC--C-CCCCCHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHCCCCCCCHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 45651015--6-89987999985158679999999999996979999736242010333888984999999999999985
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHHH
Q ss_conf 699679984788999988799999999742--9569999169888984366899997997977069926899984
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 560 ~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~--~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~~ 632 (692)
++|+||||||||++||..+...+.+.|.+. +.|+|+||||...+.. ||+|++|++|++.. .|++++.++..
T Consensus 171 ~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~-~D~ii~l~~G~iv~-~G~~~eLl~~~ 243 (255)
T d2hyda1 171 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITH-ADKIVVIENGHIVE-TGTHRELIAKQ 243 (255)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTT-CSEEEEEETTEEEE-EECHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-CCEEEEEECCEEEE-ECCHHHHHHCC
T ss_conf 599899983765447977999999999987538889999689999985-99999998999999-88999998688
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.5e-44 Score=304.00 Aligned_cols=205 Identities=25% Similarity=0.499 Sum_probs=165.5
Q ss_pred CCEEEEEEEEEECCCE---ECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE---------
Q ss_conf 7528999579991992---0100102899479789999289994899999991698997138998775320---------
Q 005532 422 RSVVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------- 489 (692)
Q Consensus 422 ~~~i~~~~v~~~y~~~---~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~--------- 489 (692)
++.|+++||+|+|+++ .+|+++||+|++|+++||||+||||||||+++|.|+++|++|+|.++|.++.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CCEEEEEEEEEECCCCCCCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCHHHHHHHHH
T ss_conf 33699999899889999997674438998499899999999984999999986143787689988998531101378887
Q ss_pred -EEEECCCCHHHCCCCCCHHHHHHHHHCC-CCHHHH---------HHHHHHC--CCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -0022132011069884499999997110-449999---------9998446--99932001367989978999999999
Q 005532 490 -PNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDI---------KGLLGRC--NFKADMLDRKVSLLSGGEKARLAFCK 556 (692)
Q Consensus 490 -~~~~~q~~~~~l~~~~t~~~~~~~~~~~-~~~~~~---------~~~L~~~--~l~~~~~~~~~~~LSgGqkqrl~LAr 556 (692)
.+|+.|++ .+ +..|+.+|+...... .....+ ...+..+ ++. ...+....+||||||||++|||
T Consensus 89 ~i~~v~Q~~--~l-f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiAR 164 (251)
T d1jj7a_ 89 QVAAVGQEP--QV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYD-TEVDEAGSQLSGGQRQAVALAR 164 (251)
T ss_dssp HEEEECSSC--CC-CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHH
T ss_pred HHHHCCCCC--CC-CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCH-HHHHCCCCCCCHHHCEEEEEEE
T ss_conf 765404565--00-2763465545421013027889999999989999985612111-3675167668954704899860
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHHH
Q ss_conf 863699679984788999988799999999742----9569999169888984366899997997977069926899984
Q 005532 557 FMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 557 all~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~~ 632 (692)
||+.+|+||||||||++||..+...+.+.|.+. +.|+|+||||+..+.. ||+|++|++|++.. .|++++.++..
T Consensus 165 al~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~-aDrI~vl~~G~iv~-~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQ-ADHILFLEGGAIRE-GGTHQQLMEKK 242 (251)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHT-CSEEEEEETTEEEE-EECHHHHHHHT
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHH-CCEEEEEECCEEEE-ECCHHHHHHCC
T ss_conf 44568707871675765685368999999999765069899999597999985-99999998999999-88999998597
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=7e-45 Score=306.40 Aligned_cols=203 Identities=21% Similarity=0.317 Sum_probs=174.6
Q ss_pred CEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE-----------EE
Q ss_conf 5289995799919920100102899479789999289994899999991698997138998775320-----------00
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (692)
Q Consensus 423 ~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~-----------~~ 491 (692)
.+|+++|++++|++..+|++|||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++. .+
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred CEEEEEEEEEEECCEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCHHHHHHHHHCCC
T ss_conf 66999778999799688712179988997999999999849999999977976887379999996640569999983387
Q ss_pred EECCCCHHHCCCCCCHHHHHHHHHC-------------CC------CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 2213201106988449999999711-------------04------4999999984469993200136798997899999
Q 005532 492 YFEQNQAEALDLDKTVLETVAEAAE-------------DW------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARL 552 (692)
Q Consensus 492 ~~~q~~~~~l~~~~t~~~~~~~~~~-------------~~------~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl 552 (692)
|++|+. .+.+..++.+|+..... .| ....+..+++.+++. ...++++.+||||||||+
T Consensus 83 ~v~Q~~--~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qrv 159 (254)
T d1g6ha_ 83 RTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 159 (254)
T ss_dssp ECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred CCCCCC--CCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC-HHCCCCHHHCCCHHHHHH
T ss_conf 257764--24788742321430133303450456654213532899999999998761963-020595356991888899
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHH
Q ss_conf 9999863699679984788999988799999999742---9569999169888984366899997997977069926899
Q 005532 553 AFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 553 ~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~---~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~ 629 (692)
+|||+|+.+|++|||||||++||+.+...+.+.|++. +.|||+||||.+++..+||||++|++|++.. .|..++..
T Consensus 160 ~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~-~g~~~e~~ 238 (254)
T d1g6ha_ 160 EIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA-EGRGEEEI 238 (254)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE-EEESHHHH
T ss_pred HHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-EECHHHHH
T ss_conf 99999975927232439765699999999999999999789989999476999998699999996998999-96689986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2e-44 Score=303.33 Aligned_cols=204 Identities=25% Similarity=0.413 Sum_probs=167.7
Q ss_pred CEEEEEEEEEECCC--EECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------E
Q ss_conf 52899957999199--20100102899479789999289994899999991698997138998775320----------0
Q 005532 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------P 490 (692)
Q Consensus 423 ~~i~~~~v~~~y~~--~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~----------~ 490 (692)
+-|+++||+|+|++ .++|+++||+|++|+++||||+||||||||+++|+|+++|++|+|.++|.++. .
T Consensus 12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 91 (253)
T d3b60a1 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 91 (253)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred EEEEEEEEEEEECCCCCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHEE
T ss_conf 07999988999299997635332899859999999999998599999998621688846898788012111066542068
Q ss_pred EEECCCCHHHCCCCCCHHHHHHHHH-CCCCHHHHHHHHHHCCCC----------CCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 0221320110698844999999971-104499999998446999----------32001367989978999999999863
Q 005532 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKARLAFCKFMV 559 (692)
Q Consensus 491 ~~~~q~~~~~l~~~~t~~~~~~~~~-~~~~~~~~~~~L~~~~l~----------~~~~~~~~~~LSgGqkqrl~LArall 559 (692)
+|+.|+. . .+..++.+++.... .....+++...+...++. .......+..||||||||++|||||+
T Consensus 92 ~~v~Q~~--~-l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~ 168 (253)
T d3b60a1 92 ALVSQNV--H-LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALL 168 (253)
T ss_dssp EEECSSC--C-CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred EEEEECC--C-CCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 7995025--4-478620243320572208999999999998179999735544101434888984999999999999995
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHH
Q ss_conf 699679984788999988799999999742--956999916988898436689999799797706992689998
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEK 631 (692)
Q Consensus 560 ~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~--~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~ 631 (692)
++|+||||||||++||..+...+.+.|++. +.|+|+||||...+. .||+|++|++|++.. .|++++.+..
T Consensus 169 ~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~v~vl~~G~Iv~-~G~~~eLl~~ 240 (253)
T d3b60a1 169 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVE-RGTHSELLAQ 240 (253)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEE-EECHHHHHHH
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH-HCCEEEEEECCEEEE-ECCHHHHHHC
T ss_conf 49988995164445898899999999987522788999988799998-599999998999999-8899999868
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.2e-45 Score=307.80 Aligned_cols=204 Identities=21% Similarity=0.426 Sum_probs=165.7
Q ss_pred EEEEEEEEEECCC-EECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------EEE
Q ss_conf 2899957999199-20100102899479789999289994899999991698997138998775320----------002
Q 005532 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 424 ~i~~~~v~~~y~~-~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
+|+++||+|+|++ +.+|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. .+|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCEEECCCCHHHHHHHEEE
T ss_conf 97999889987999841422589985999999999999979999999999609898779889988442467888743679
Q ss_pred ECCCCHHHCCCCCCHHHHHHHHH-CCCCHHHHHHHHHHCCCCC------C----CCCCCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 21320110698844999999971-1044999999984469993------2----00136798997899999999986369
Q 005532 493 FEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKA------D----MLDRKVSLLSGGEKARLAFCKFMVKP 561 (692)
Q Consensus 493 ~~q~~~~~l~~~~t~~~~~~~~~-~~~~~~~~~~~L~~~~l~~------~----~~~~~~~~LSgGqkqrl~LArall~~ 561 (692)
++|++ .+ +..|+.+|+.... .......+...+...++.. . .......+||||||||++|||||+.+
T Consensus 81 v~Q~~--~l-f~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~ 157 (242)
T d1mv5a_ 81 VSQDS--AI-MAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRN 157 (242)
T ss_dssp ECCSS--CC-CCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHC
T ss_pred ECCCC--CC-CCCCHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 75665--45-7853454301244555423567789999975554203742101523687898799999999999998529
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHHH
Q ss_conf 9679984788999988799999999742--9569999169888984366899997997977069926899984
Q 005532 562 STLLVLDEPTNHLDIPSKEMLEEAISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 562 p~iLlLDEPTn~LD~~s~~~l~~~L~~~--~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~~ 632 (692)
|+||||||||++||..+...+.+.|++. +.|+|+||||.+.+.. ||+|++|++|++.. .|++++.++..
T Consensus 158 p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-~D~i~vl~~G~iv~-~G~~~eLl~~~ 228 (242)
T d1mv5a_ 158 PKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVD-ADKIYFIEKGQITG-SGKHNELVATH 228 (242)
T ss_dssp CSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHH-CSEEEEEETTEECC-CSCHHHHHHHC
T ss_pred CCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCEEEEEECCEEEE-ECCHHHHHHCC
T ss_conf 9899965886556988999998878887179989999787999984-99999998999999-99999998689
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=6.7e-44 Score=299.82 Aligned_cols=205 Identities=24% Similarity=0.366 Sum_probs=154.0
Q ss_pred CEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 57999389996990003512499977969999968984189999999779999961799877875699982567568799
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (692)
Q Consensus 97 ~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~~~~~~~ 176 (692)
.|+++|++ |.+.++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++| +++|++|++++ +..
T Consensus 38 ~i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~i~~v~Q~~~l-~~~ 111 (281)
T d1r0wa_ 38 NVSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---RVSFCSQFSWI-MPG 111 (281)
T ss_dssp --CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---CEEEECSSCCC-CSE
T ss_pred CEEEEECC--CCCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECC---EEEEEECCCCC-CCC
T ss_conf 67999769--8997677375999859999999989998299999999579747882899999---99998164302-676
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 89999996328999999999999998842001057888779999999999861690009999997703419993111454
Q 005532 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (692)
Q Consensus 177 Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~ 256 (692)
||++|+..+..... ..+...++. +.+...+..+.... . ......
T Consensus 112 tv~eni~~~~~~~~------~~~~~~~~~---------------------------~~~~~~i~~l~~~~--~-~~~~~~ 155 (281)
T d1r0wa_ 112 TIKENIIFGVSYDE------YRYKSVVKA---------------------------CQLQQDITKFAEQD--N-TVLGEG 155 (281)
T ss_dssp EHHHHHTTTSCCCH------HHHHHHHHH---------------------------TTCHHHHTTSTTGG--G-CEECTT
T ss_pred EEECCCCCCCCCCC------HHHHHHHHH---------------------------HHHHHHHHHCHHHH--H-HHHHHH
T ss_conf 03214203334560------579999999---------------------------77699998461233--2-355554
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHH-HC--CCCCEEEEEECCHHHHHHHCCEEEEEECCE
Q ss_conf 566895799999999998139995997178999999889999998-72--499839999439888984448589972333
Q 005532 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LG--KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (692)
Q Consensus 257 ~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~-L~--~~~~tvIivsHd~~~l~~~~~~i~~l~~G~ 333 (692)
..+|||||||||+|||||+.+|+||||||||++||+.+...+.+. +. ..++|+|+|||+++.+. .||+|+++++|+
T Consensus 156 ~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGS 234 (281)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTE
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HCCEEEEEECCE
T ss_conf 2377999999999999998696351333855448989999999999988628999999925289998-599999998999
Q ss_pred EEEECCCHHHHH
Q ss_conf 778216858999
Q 005532 334 SRTYEGNYSQYV 345 (692)
Q Consensus 334 ~~~~~g~y~~~~ 345 (692)
+. +.|++.+..
T Consensus 235 i~-~~Gt~~eL~ 245 (281)
T d1r0wa_ 235 SY-FYGTFSELQ 245 (281)
T ss_dssp EE-EEECHHHHH
T ss_pred EE-EECCHHHHH
T ss_conf 99-987899996
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.4e-42 Score=287.98 Aligned_cols=198 Identities=25% Similarity=0.419 Sum_probs=170.6
Q ss_pred EEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE--------EEEECCC
Q ss_conf 89995799919920100102899479789999289994899999991698997138998775320--------0022132
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (692)
Q Consensus 425 i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~--------~~~~~q~ 496 (692)
+++ ++.+.|++..+ ++||++. ++.++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|+
T Consensus 3 l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~ 78 (240)
T d2onka1 3 LKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp EEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEE-EEEEEECCEEE--EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCCEEECCC
T ss_conf 999-99999899999--9999749-9799999799980999999997399989628999999988699899285225231
Q ss_pred CHHHCCCCCCHHHHHHHHHCCCCH----HHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC
Q ss_conf 011069884499999997110449----9999998446999320013679899789999999998636996799847889
Q 005532 497 QAEALDLDKTVLETVAEAAEDWRI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN 572 (692)
Q Consensus 497 ~~~~l~~~~t~~~~~~~~~~~~~~----~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn 572 (692)
. .+.+..|+.||+......+.. ..+..++..+++. +..++.+.+||||||||++|||||+.+|++|||||||+
T Consensus 79 ~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts 155 (240)
T d2onka1 79 Y--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp C--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred H--HHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCH-HHHHCCHHHCCHHHHHHHHHHHHHHCCCCCEEECCCCC
T ss_conf 4--43522015576665323367788999999999863837-56657944489999899999877751677067528655
Q ss_pred CCCHHHHHHHHHHHHHC----CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHH
Q ss_conf 99988799999999742----95699991698889843668999979979770699268999
Q 005532 573 HLDIPSKEMLEEAISEY----KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLE 630 (692)
Q Consensus 573 ~LD~~s~~~l~~~L~~~----~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~ 630 (692)
+||+.+...+.+.|++. +.|+|+||||...+..+||+|++|++|++.. .|...+.+.
T Consensus 156 ~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~-~G~~~el~~ 216 (240)
T d2onka1 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVE-KGKLKELFS 216 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEE-EECHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-EECHHHHHC
T ss_conf 5887999999999999987439769998189999999699999998999999-906999832
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.3e-40 Score=274.45 Aligned_cols=197 Identities=23% Similarity=0.353 Sum_probs=153.6
Q ss_pred EEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCC
Q ss_conf 89995799919920100102899479789999289994899999991698997138998775320002213201106988
Q 005532 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (692)
Q Consensus 425 i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~ 504 (692)
|.+++++ |.++++|+++||+|++|+++||+|+||||||||+++|+|+++|++|.|.++|. .+|++|.. .+ +.
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~---i~~v~Q~~--~l-~~ 110 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR---VSFCSQFS--WI-MP 110 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCSC---EEEECSSC--CC-CS
T ss_pred EEEEECC--CCCCEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCE---EEEEECCC--CC-CC
T ss_conf 7999769--89976773759998599999999899982999999995797478828999999---99981643--02-67
Q ss_pred CCHHHHHHHHHCCCCHHHHHHHHHHCCC-------C---CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 4499999997110449999999844699-------9---32001367989978999999999863699679984788999
Q 005532 505 KTVLETVAEAAEDWRIDDIKGLLGRCNF-------K---ADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (692)
Q Consensus 505 ~t~~~~~~~~~~~~~~~~~~~~L~~~~l-------~---~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~L 574 (692)
.++.+++..... +........+..+.+ . .........+||||||||++|||||+++|+||||||||++|
T Consensus 111 ~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~L 189 (281)
T d1r0wa_ 111 GTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYL 189 (281)
T ss_dssp EEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSS
T ss_pred CEEECCCCCCCC-CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCC
T ss_conf 603214203334-5605799999997769999846123323555542377999999999999998696351333855448
Q ss_pred CHHHHHHHHHH-HHHC--CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHHHHH
Q ss_conf 98879999999-9742--9569999169888984366899997997977069926899984
Q 005532 575 DIPSKEMLEEA-ISEY--KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYLEKN 632 (692)
Q Consensus 575 D~~s~~~l~~~-L~~~--~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~~~~ 632 (692)
|..+...+.+. +... +.|+|+|||+.+.+. .||+|++|++|++.. .|++++.+..+
T Consensus 190 D~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~i~~-~Gt~~eL~~~~ 248 (281)
T d1r0wa_ 190 DVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGSSYF-YGTFSELQSLR 248 (281)
T ss_dssp CHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTEEEE-EECHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEECHHHHHH-HCCEEEEEECCEEEE-ECCHHHHHCCC
T ss_conf 989999999999988628999999925289998-599999998999999-87899996059
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-40 Score=279.09 Aligned_cols=196 Identities=28% Similarity=0.348 Sum_probs=158.9
Q ss_pred CEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC----------EEEEE
Q ss_conf 57999389996990003512499977969999968984189999999779999961799877875----------69998
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (692)
Q Consensus 97 ~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~----------~i~yv 166 (692)
.|+++|++++| .|++|||+|++||+++|+||||||||||+++|+|+. |++|+|.++|.+. ..+|+
T Consensus 3 il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~ 77 (231)
T d1l7vc_ 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYL 77 (231)
T ss_dssp EEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEE
T ss_pred EEEEECCCCCC----EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCEEE
T ss_conf 99998741571----555888899489899999899980999999994887-9955999999999869989998640245
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 25675687998999999632899999999999999884200105788877999999999986169000999999770341
Q 005532 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (692)
Q Consensus 167 ~Q~~~~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~l 246 (692)
+|+....+..++.+++...... ....+.+.+++..+
T Consensus 78 ~~~~~~~~~~~v~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~ 113 (231)
T d1l7vc_ 78 SQQQTPPFATPVWHYLTLHQHD--------------------------------------------KTRTELLNDVAGAL 113 (231)
T ss_dssp CSCCCCCSSCBHHHHHHHHCSC--------------------------------------------TTCHHHHHHHHHHT
T ss_pred ECCCCCCCCCCHHHHHHHCCCH--------------------------------------------HHHHHHHHHHHHHC
T ss_conf 1213577442098876410014--------------------------------------------66899999999865
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-------CCCEEEECCCCCCCCHHHHHHHHHHHC---CCCCEEEEEECCH
Q ss_conf 999311145456689579999999999813-------999599717899999988999999872---4998399994398
Q 005532 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (692)
Q Consensus 247 gl~~~~~~~~~~~LSGGqkqRvaLAraL~~-------~p~iLLLDEPts~LD~~~~~~l~~~L~---~~~~tvIivsHd~ 316 (692)
++. ...++++.+|||||||||+|||+|++ +|+||||||||++||+.+...+.++++ +.|.|||++|||+
T Consensus 114 ~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl 192 (231)
T d1l7vc_ 114 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL 192 (231)
T ss_dssp TCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH
T ss_pred CCH-HHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH
T ss_conf 987-6767684456998899999999998517133899889997187777898999999999999986799999996779
Q ss_pred HHHHHHCCEEEEEECCEEEEECCCHHH
Q ss_conf 889844485899723337782168589
Q 005532 317 AFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (692)
Q Consensus 317 ~~l~~~~~~i~~l~~G~~~~~~g~y~~ 343 (692)
+++..+||+|+.+.+|++. +.|...+
T Consensus 193 ~~~~~~~dri~vl~~G~iv-~~G~~~e 218 (231)
T d1l7vc_ 193 NHTLRHAHRAWLLKGGKML-ASGRREE 218 (231)
T ss_dssp HHHHHHCSBCCBEETTEEC-CCSBHHH
T ss_pred HHHHHHCCEEEEEECCEEE-EECCHHH
T ss_conf 9999979999999799899-9889999
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-40 Score=278.81 Aligned_cols=186 Identities=22% Similarity=0.332 Sum_probs=144.5
Q ss_pred CEEEEEEEEEECCEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCC-----CEEEEECCCCC
Q ss_conf 5799938999699000351249997796999996898418999999977999996179987787-----56999825675
Q 005532 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFE 171 (692)
Q Consensus 97 ~i~i~nvs~~y~~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~-----~~i~yv~Q~~~ 171 (692)
.|+++|++|+|+ +++|+++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 80 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred EEEEEEEEEEEC-CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEECCC
T ss_conf 599998999939-9288420889859989999999997199999999662056778899998962673670899950135
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 68799899999963289999999999999988420010578887799999999998616900099999977034199931
Q 005532 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (692)
Q Consensus 172 ~~~~~Tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~ 251 (692)
+....|+.+++..... +.. ....+..+.+.++.+++.
T Consensus 81 ~~~~~t~~~~l~~~~~---------------~~~--------------------------~~~~~~~~~~~l~~~~~~-- 117 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVAS---------------LYG--------------------------VKVNKNEIMDALESVEVL-- 117 (200)
T ss_dssp CCTTSBHHHHHHHHHH---------------HTT--------------------------CCCCHHHHHHHHHHTTCC--
T ss_pred CCCCCCHHHHHHHHHH---------------HCC--------------------------CCCCHHHHHHHHHHCCCC--
T ss_conf 7888289999999997---------------548--------------------------863799999999874885--
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHC----CCCCEEEEEECCHHHHHHHCCEEE
Q ss_conf 1145456689579999999999813999599717899999988999999872----499839999439888984448589
Q 005532 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIV 327 (692)
Q Consensus 252 ~~~~~~~~LSGGqkqRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~----~~~~tvIivsHd~~~l~~~~~~i~ 327 (692)
..++.+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.+. +.+.++|.++|+. .+||++.
T Consensus 118 ~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~ 193 (200)
T d1sgwa_ 118 DLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNE 193 (200)
T ss_dssp CTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEE
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECHH----HHCCHHH
T ss_conf 630126868971888899999886499899986862016999999999999999867999999991625----4416123
Q ss_pred EEE
Q ss_conf 972
Q 005532 328 ETE 330 (692)
Q Consensus 328 ~l~ 330 (692)
.+.
T Consensus 194 ~l~ 196 (200)
T d1sgwa_ 194 NLH 196 (200)
T ss_dssp EGG
T ss_pred HEE
T ss_conf 401
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.5e-39 Score=266.30 Aligned_cols=198 Identities=25% Similarity=0.403 Sum_probs=162.4
Q ss_pred CEEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE----------EEE
Q ss_conf 5289995799919920100102899479789999289994899999991698997138998775320----------002
Q 005532 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (692)
Q Consensus 423 ~~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~----------~~~ 492 (692)
.+|+++||+++| .++++||+|++||.+||+|+||||||||+++|+|+. |++|+|.++|.++. .+|
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred EEEEEECCCCCC----EECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCEEEEECCEECCCCCHHHHHHHCEE
T ss_conf 599998741571----555888899489899999899980999999994887-995599999999986998999864024
Q ss_pred ECCCCHHHCCCCCCHHHHHHHHHCCC-CHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC-------CCCE
Q ss_conf 21320110698844999999971104-499999998446999320013679899789999999998636-------9967
Q 005532 493 FEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVK-------PSTL 564 (692)
Q Consensus 493 ~~q~~~~~l~~~~t~~~~~~~~~~~~-~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~-------~p~i 564 (692)
+.|... .....++.+++....... ..+.+..++..+++. +..++++..||||||||++|||+++. +|+|
T Consensus 77 ~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l 153 (231)
T d1l7vc_ 77 LSQQQT--PPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 153 (231)
T ss_dssp ECSCCC--CCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred EECCCC--CCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCH-HHHCCCHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCE
T ss_conf 512135--7744209887641001466899999999865987-6767684456998899999999998517133899889
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCCHHHHH
Q ss_conf 9984788999988799999999742---9569999169888984366899997997977069926899
Q 005532 565 LVLDEPTNHLDIPSKEMLEEAISEY---KGTVITVSHDRYFVKQIVNRVVEVKGSNLQDYAGDYNYYL 629 (692)
Q Consensus 565 LlLDEPTn~LD~~s~~~l~~~L~~~---~~tvI~VSHd~~~i~~~~d~i~~l~~g~i~~~~g~y~~y~ 629 (692)
|||||||++||+.+...+.+.|++. +.|||+||||.+.+..+||++++|++|++.. .|...+..
T Consensus 154 lllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~-~G~~~ev~ 220 (231)
T d1l7vc_ 154 LLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLA-SGRREEVL 220 (231)
T ss_dssp EEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECC-CSBHHHHS
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHCCEEEEEECCEEEE-ECCHHHHH
T ss_conf 99718777789899999999999998679999999677999999799999997998999-88999981
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1e-37 Score=259.56 Aligned_cols=182 Identities=25% Similarity=0.403 Sum_probs=146.7
Q ss_pred EEEEEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCE-----EEEECCCCH
Q ss_conf 289995799919920100102899479789999289994899999991698997138998775320-----002213201
Q 005532 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----PNYFEQNQA 498 (692)
Q Consensus 424 ~i~~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~-----~~~~~q~~~ 498 (692)
.|+++|++++|+ +++|+++||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.++. ..|++|+.
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~- 79 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI- 79 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC-
T ss_pred EEEEEEEEEEEC-CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEEHHHHCCCEEEEEECC-
T ss_conf 599998999939-928842088985998999999999719999999966205677889999896267367089995013-
Q ss_pred HHCCCCCCHHHHHHHHHC----CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 106988449999999711----0449999999844699932001367989978999999999863699679984788999
Q 005532 499 EALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL 574 (692)
Q Consensus 499 ~~l~~~~t~~~~~~~~~~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~L 574 (692)
.+....++.+++..... .+...++...+..+++.. ..+++.+||||||||++|||+++.+|++|||||||++|
T Consensus 80 -~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gL 156 (200)
T d1sgwa_ 80 -IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 156 (200)
T ss_dssp -CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTS
T ss_pred -CCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC--CCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf -578882899999999975488637999999998748856--30126868971888899999886499899986862016
Q ss_pred CHHHHHHHHHHHHHC---CC-EEEEEECCHHHHHHHCCEEEEEE
Q ss_conf 988799999999742---95-69999169888984366899997
Q 005532 575 DIPSKEMLEEAISEY---KG-TVITVSHDRYFVKQIVNRVVEVK 614 (692)
Q Consensus 575 D~~s~~~l~~~L~~~---~~-tvI~VSHd~~~i~~~~d~i~~l~ 614 (692)
|..++..+.+.|.++ .+ ++|+.+|+. .+||++..|.
T Consensus 157 D~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~ 196 (200)
T d1sgwa_ 157 DEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLH 196 (200)
T ss_dssp CTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGG
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEEECHH----HHCCHHHHEE
T ss_conf 999999999999999867999999991625----4416123401
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.62 E-value=3.4e-18 Score=132.65 Aligned_cols=159 Identities=15% Similarity=0.132 Sum_probs=78.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEE-----EEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHH
Q ss_conf 899992899948999999916989971389987753200-----022132011069884499999997110449999999
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~-----~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~~~ 526 (692)
+++|+|+||||||||++.|+|.++|+.|.+...+..... ++..... ...... ...+... ....
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-------~~~~~~~-~~~~ 69 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT----EGKKKI-------FSSKFFT-SKKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET----TCCEEE-------EEETTCC-CSSE
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHH----HHHHHH-------HHHHHHH-HHHH
T ss_conf 899998999389999999981488886469987713288887653112336----677788-------7541134-5544
Q ss_pred HHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCC--CCCHHHHHHHHHHHHHCCCEEEEEECCHHHHH
Q ss_conf 8446999320013679899789999999998636996799847889--99988799999999742956999916988898
Q 005532 527 LGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTN--HLDIPSKEMLEEAISEYKGTVITVSHDRYFVK 604 (692)
Q Consensus 527 L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn--~LD~~s~~~l~~~L~~~~~tvI~VSHd~~~i~ 604 (692)
.++++ .+.....+|+|++++.++++++..+|++|++|||+. +.+......+.+.++..+.++|+++|+....
T Consensus 70 ~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~- 143 (178)
T d1ye8a1 70 VGSYG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH- 143 (178)
T ss_dssp ETTEE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCS-
T ss_pred HHHHH-----CCCCHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHH-
T ss_conf 30230-----376256653201378999999740997423027773100457999999987505797899997447789-
Q ss_pred HHCCEEEEEECCEEEE-ECCCHHHH
Q ss_conf 4366899997997977-06992689
Q 005532 605 QIVNRVVEVKGSNLQD-YAGDYNYY 628 (692)
Q Consensus 605 ~~~d~i~~l~~g~i~~-~~g~y~~y 628 (692)
..+++++.+.++.+.. .+.|++..
T Consensus 144 ~~~~~i~~~~~~~i~~v~~~nrd~~ 168 (178)
T d1ye8a1 144 PLVKEIRRLPGAVLIELTPENRDVI 168 (178)
T ss_dssp HHHHHHHTCTTCEEEECCTTTTTTH
T ss_pred HHHCEEEEEECCEEEEECCCCHHHH
T ss_conf 8636599871999999899647889
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.57 E-value=3.5e-17 Score=126.05 Aligned_cols=146 Identities=14% Similarity=0.082 Sum_probs=98.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCC-----EEEEECCCC----CCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9999968984189999999779999961799877875-----699982567----5687998999999632899999999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEF----EVSMSRTVREEFMSAFKEEMEIAGK 195 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~-----~i~yv~Q~~----~~~~~~Tv~e~i~~~~~~~~~~~~~ 195 (692)
+++|+||||||||||++.|+|.+++..|.+...+... +.++..... ......+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 66 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTS--------------- 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCC---------------
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_conf 89999899938999999998148888646998771328888765311233667778875411345---------------
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99999988420010578887799999999998616900099999977034199931114545668957999999999981
Q 005532 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (692)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ll~~lgl~~~~~~~~~~~LSGGqkqRvaLAraL~ 275 (692)
. ......+ .+.....+|+|++++.++++++.
T Consensus 67 ----------------------------------~----------~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~ 97 (178)
T d1ye8a1 67 ----------------------------------K----------KLVGSYG-----VNVQYFEELAIPILERAYREAKK 97 (178)
T ss_dssp ----------------------------------S----------SEETTEE-----ECHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------------H----------HHHHHHH-----CCCCHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------------------------5----------4430230-----37625665320137899999974
Q ss_pred CCCCEEEECCCCCC--CCHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCEEEEEECCEEE
Q ss_conf 39995997178999--9998899999987249983999943988898444858997233377
Q 005532 276 QDPDLLLLDEPTNH--LDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (692)
Q Consensus 276 ~~p~iLLLDEPts~--LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~~~~~~i~~l~~G~~~ 335 (692)
.+|+++++|||... .+......+...++..+.++|+++|+.... ..|+++....+|++.
T Consensus 98 ~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~-~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVLI 158 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCS-HHHHHHHTCTTCEEE
T ss_pred CCCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHH-HHHCEEEEEECCEEE
T ss_conf 0997423027773100457999999987505797899997447789-863659987199999
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.16 E-value=1e-09 Score=77.47 Aligned_cols=75 Identities=32% Similarity=0.484 Sum_probs=61.5
Q ss_pred CCCCCCCHHHHHHHHHHHH----HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCHHHHHHHCCEEEE
Q ss_conf 3679899789999999998----636996799847889999887999999997429--5699991698889843668999
Q 005532 539 RKVSLLSGGEKARLAFCKF----MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVKQIVNRVVE 612 (692)
Q Consensus 539 ~~~~~LSgGqkqrl~LAra----ll~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~--~tvI~VSHd~~~i~~~~d~i~~ 612 (692)
..+..+|+|+|+.+.++.. ....+.++++|||-+||++.....|.+.|++.. .-+|++||...+++. +|+++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~-~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA-ADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG-CSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCCEEE
T ss_conf 1011025777667777766556542267445543203357978999999999985548879999898899973-242899
Q ss_pred EE
Q ss_conf 97
Q 005532 613 VK 614 (692)
Q Consensus 613 l~ 614 (692)
+.
T Consensus 294 v~ 295 (308)
T d1e69a_ 294 VT 295 (308)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.13 E-value=2.7e-09 Score=74.69 Aligned_cols=79 Identities=19% Similarity=0.316 Sum_probs=61.7
Q ss_pred CCCCCCCHHHHHHHHHHHH----HCCCCCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHHHHHHCCEEE-
Q ss_conf 5456689579999999999----8139995997178999999889999998724--99839999439888984448589-
Q 005532 255 RLVASFSSGWQMRMSLGKI----LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIV- 327 (692)
Q Consensus 255 ~~~~~LSGGqkqRvaLAra----L~~~p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~l~~~~~~i~- 327 (692)
.....+|+|+++...++.. ....+.++++|||-+||++.....+.++|+. .+.-+|++||++.+++. +|++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~-~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEA-ADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGG-CSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCCEEE
T ss_conf 1011025777667777766556542267445543203357978999999999985548879999898899973-242899
Q ss_pred -EEECCEE
Q ss_conf -9723337
Q 005532 328 -ETEMGVS 334 (692)
Q Consensus 328 -~l~~G~~ 334 (692)
..++|..
T Consensus 294 v~~~~g~s 301 (308)
T d1e69a_ 294 VTMVNGVS 301 (308)
T ss_dssp EEESSSCE
T ss_pred EEEECCEE
T ss_conf 99969999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.01 E-value=1.7e-09 Score=76.10 Aligned_cols=76 Identities=28% Similarity=0.405 Sum_probs=62.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHH----CCCCCEEEEECCCCCCCHHHHHHHHHHHHHCC--C-EEEEEECCHHHHHHHCCEE
Q ss_conf 136798997899999999986----36996799847889999887999999997429--5-6999916988898436689
Q 005532 538 DRKVSLLSGGEKARLAFCKFM----VKPSTLLVLDEPTNHLDIPSKEMLEEAISEYK--G-TVITVSHDRYFVKQIVNRV 610 (692)
Q Consensus 538 ~~~~~~LSgGqkqrl~LAral----l~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~--~-tvI~VSHd~~~i~~~~d~i 610 (692)
..++..||||||.+++||-.+ ..++++++||||++|||......+.+.|.+.. . -+|++||+..++.. +|++
T Consensus 327 ~~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~ 405 (427)
T d1w1wa_ 327 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDAL 405 (427)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCCE
T ss_conf 434333223047999999999995479997799968877789999999999999972899889999587899973-6617
Q ss_pred EEEE
Q ss_conf 9997
Q 005532 611 VEVK 614 (692)
Q Consensus 611 ~~l~ 614 (692)
+.+.
T Consensus 406 ~~V~ 409 (427)
T d1w1wa_ 406 VGVY 409 (427)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9999
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.98 E-value=2.2e-09 Score=75.36 Aligned_cols=74 Identities=19% Similarity=0.416 Sum_probs=58.4
Q ss_pred CCCCCCCHHHHHHHHHHHHH----CCCCCEEEECCCCCCCCHHHHHHHHHHHCC---CCCEEEEEECCHHHHHHHCCEEE
Q ss_conf 54566895799999999998----139995997178999999889999998724---99839999439888984448589
Q 005532 255 RLVASFSSGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (692)
Q Consensus 255 ~~~~~LSGGqkqRvaLAraL----~~~p~iLLLDEPts~LD~~~~~~l~~~L~~---~~~tvIivsHd~~~l~~~~~~i~ 327 (692)
.++..||||||.+++||-.+ +..+++++||||++|||+..+..+.++|.+ .+..+|++||++..+.. +|+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~-ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK-SDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT-CSEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHH-CCCEE
T ss_conf 34333223047999999999995479997799968877789999999999999972899889999587899973-66179
Q ss_pred EE
Q ss_conf 97
Q 005532 328 ET 329 (692)
Q Consensus 328 ~l 329 (692)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
T ss_conf 99
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.34 E-value=1.7e-05 Score=49.97 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=33.7
Q ss_pred CCCCEEEECCCCCCCCHHHHHHH----HHHHCCCCCEEEEEECCHHHHHH
Q ss_conf 39995997178999999889999----99872499839999439888984
Q 005532 276 QDPDLLLLDEPTNHLDLDTIEWL----EGYLGKQDVPMVIISHDRAFLDQ 321 (692)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l----~~~L~~~~~tvIivsHd~~~l~~ 321 (692)
.+..++|+||+..|=++....-+ .+.|.+.+..++++||..+....
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 97727855454568623320025888888886237613786520233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=4.2e-05 Score=47.48 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=30.6
Q ss_pred CCCCCEEEECCCCCCCCHHHHHHH----HHHH-CCCCCEEEEEECCHHHHH
Q ss_conf 139995997178999999889999----9987-249983999943988898
Q 005532 275 LQDPDLLLLDEPTNHLDLDTIEWL----EGYL-GKQDVPMVIISHDRAFLD 320 (692)
Q Consensus 275 ~~~p~iLLLDEPts~LD~~~~~~l----~~~L-~~~~~tvIivsHd~~~l~ 320 (692)
..+..++|+||+..|=++.....+ ..+| .+....+|++||..+...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 546608853222358774566678987645432045442898524687764
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.64 E-value=0.0015 Score=37.32 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=34.2
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH----HHHCCCEEEEEECCHHHHHH
Q ss_conf 369967998478899998879999999----97429569999169888984
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEA----ISEYKGTVITVSHDRYFVKQ 605 (692)
Q Consensus 559 l~~p~iLlLDEPTn~LD~~s~~~l~~~----L~~~~~tvI~VSHd~~~i~~ 605 (692)
..+..++|+||+..+=+...-..+... |.+.+..++++||..++...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~l 162 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTAL 162 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHTC
T ss_pred CCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECHHHHHH
T ss_conf 897727855454568623320025888888886237613786520233322
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.45 E-value=0.0018 Score=36.80 Aligned_cols=46 Identities=13% Similarity=0.034 Sum_probs=30.6
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHH-HH---HCC-CEEEEEECCHHHHH
Q ss_conf 369967998478899998879999999-97---429-56999916988898
Q 005532 559 VKPSTLLVLDEPTNHLDIPSKEMLEEA-IS---EYK-GTVITVSHDRYFVK 604 (692)
Q Consensus 559 l~~p~iLlLDEPTn~LD~~s~~~l~~~-L~---~~~-~tvI~VSHd~~~i~ 604 (692)
..+..++|+||+..+=+...-..+... +. ... ..++++||..+...
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~~ 168 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 168 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGG
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHH
T ss_conf 546608853222358774566678987645432045442898524687764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.28 E-value=0.0018 Score=36.93 Aligned_cols=53 Identities=28% Similarity=0.278 Sum_probs=34.2
Q ss_pred CEECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCC
Q ss_conf 9000351249997796999996898418999999977999996179987787569998256
Q 005532 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169 (692)
Q Consensus 109 ~~~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~ 169 (692)
+-+-|+++.-=+.+|+++.|.|+.|+|||||+.-|+-.+-.. .+..+.|++-+
T Consensus 21 G~~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~--------~g~~v~~~s~E 73 (277)
T d1cr2a_ 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA--------MGKKVGLAMLE 73 (277)
T ss_dssp SCTTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHT--------SCCCEEEEESS
T ss_pred CCHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH--------CCCCEEEEEEC
T ss_conf 836688874697898089999479997999999999726553--------36634576401
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.26 E-value=0.0011 Score=38.19 Aligned_cols=113 Identities=15% Similarity=0.154 Sum_probs=63.3
Q ss_pred EEEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHH
Q ss_conf 28994797899992899948999999916989971389987753200022132011069884499999997110449999
Q 005532 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (692)
Q Consensus 444 sl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~ 523 (692)
...+..+.-+.|+|+.|||||||++.|++..+|..--+++-+. +.+. +.... .+.
T Consensus 160 ~~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiEd~---~El~-------l~~~~-----------~~~---- 214 (323)
T d1g6oa_ 160 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT---EEIV-------FKHHK-----------NYT---- 214 (323)
T ss_dssp HHHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS---CCCC-------CSSCS-----------SEE----
T ss_pred HHHHHHCCCEEEEEECCCCCHHHHHHHHHHCCCCCCEEECCCH---HHHH-------CCCCC-----------CCC----
T ss_conf 9999837888999403566257899986530145623311322---6551-------11124-----------541----
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHH
Q ss_conf 9998446999320013679899789999999998636996799847889999887999999997429569999169888
Q 005532 524 KGLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYF 602 (692)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~tvI~VSHd~~~ 602 (692)
. .. .-...+. .-++-.+|-.+|+.+++.|--. .++..+++.+.... .+++...|-..-
T Consensus 215 -----~-------~~-~~~~~~~----~~ll~~~lR~~pd~iivgEiR~---~ea~~~l~a~~tGh-~g~~tT~Ha~s~ 272 (323)
T d1g6oa_ 215 -----Q-------LF-FGGNITS----ADCLKSCLRMRPDRIILGELRS---SEAYDFYNVLCSGH-KGTLTTLHAGSS 272 (323)
T ss_dssp -----E-------EE-CBTTBCH----HHHHHHHTTSCCSEEEESCCCS---THHHHHHHHHHTTC-SCEEEEECCSSH
T ss_pred -----E-------EC-CCCCHHH----HHHHHHHHCCCCCCCCCCCCCC---HHHHHHHHHHHHCC-CCEEEEECCCCH
T ss_conf -----0-------01-4654249----9999997434998545786674---65999999998169-857998787999
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.20 E-value=0.00015 Score=43.81 Aligned_cols=33 Identities=39% Similarity=0.435 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 978999928999489999999169899713899
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~ 482 (692)
|...+++|++|+|||||++.|.+......|.|.
T Consensus 95 ~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 95 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCC
T ss_conf 980899788987788887730535550106842
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=1.1e-05 Score=51.34 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=24.8
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 0351249997796999996898418999999977
Q 005532 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 112 iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G 145 (692)
.+.+.++.+.+| +++|+|+|||||||+|.+|.-
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~ 46 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVT 46 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHH
T ss_pred CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHH
T ss_conf 870279974998-089988999987999999999
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.01 E-value=0.0044 Score=34.33 Aligned_cols=24 Identities=25% Similarity=0.544 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.++|+|..|+|||||++.|.|.-.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 799989999978999999958886
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.00016 Score=43.70 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 969999968984189999999779999
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~~p 149 (692)
|.++.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.92 E-value=0.00044 Score=40.86 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 79699999689841899999997799999617998
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~ 156 (692)
+|..++++|++|.|||||++.|.|...--.|.|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHCCCCCC
T ss_conf 69808997889877888877305355501068420
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.87 E-value=0.00014 Score=44.02 Aligned_cols=33 Identities=33% Similarity=0.403 Sum_probs=18.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEE
Q ss_conf 978999928999489999999169899713899
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~ 482 (692)
|..+.++|++|+|||||++.|.+......|.|.
T Consensus 97 ~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 97 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCC
T ss_conf 564999877873487898751517676403555
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=96.84 E-value=0.0045 Score=34.30 Aligned_cols=49 Identities=24% Similarity=0.264 Sum_probs=31.6
Q ss_pred HHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHH
Q ss_conf 99999999813999599717899999988999999872499839999439888
Q 005532 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (692)
Q Consensus 266 qRvaLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~~~tvIivsHd~~~ 318 (692)
---+|..+|=.+||+++..|.. |.++.....+.- ..|..|+-.-|-..-
T Consensus 216 ~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa~~a 264 (401)
T d1p9ra_ 216 FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHTNTA 264 (401)
T ss_dssp HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSS
T ss_pred HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHHHHH-HCCCEEEEEECCCCH
T ss_conf 9999999984138889845768---759999999997-249858998336766
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.74 E-value=0.013 Score=31.28 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 779699999689841899999997
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~ 144 (692)
.+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 589589999289998999999999
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.73 E-value=0.013 Score=31.30 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 977969999968984189999999779
Q 005532 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 120 i~~Ge~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++|..+.|.|+.|||||||+.-++-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 869849999918999999999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.68 E-value=0.00062 Score=39.89 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79699999689841899999997799
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.|.++.|+|+.||||||+.+.|+...
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98599998899998899999999995
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.59 E-value=0.008 Score=32.66 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=15.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999996898418999999977
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++.|+|+.|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 7999989999999999999999
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.56 E-value=0.017 Score=30.48 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=32.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCC
Q ss_conf 9977969999968984189999999779999961799877875699982567
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~ 170 (692)
=|+.|.++.+.|+.|||||||+-.++....-. +..+.|+.-+.
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~---------g~~v~yiDtE~ 95 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKA---------GGTCAFIDAEH 95 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHT---------TCCEEEEESSC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHC---------CCEEEEEECCC
T ss_conf 86675478980587652279999999999707---------99899998876
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.00076 Score=39.30 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
+++|+|++|||||||++.|...+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899991899989999999999999
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.55 E-value=0.017 Score=30.45 Aligned_cols=41 Identities=34% Similarity=0.472 Sum_probs=27.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCC
Q ss_conf 77969999968984189999999779999961799877875699982567
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~ 170 (692)
+++.+++++||+|+||||.+-=|+..+. .. +.+++.+.=+.
T Consensus 4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~-~~--------g~kV~lit~Dt 44 (207)
T d1okkd2 4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQ-NL--------GKKVMFCAGDT 44 (207)
T ss_dssp CSSSEEEEECSTTSSHHHHHHHHHHHHH-TT--------TCCEEEECCCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCCEEEEEECC
T ss_conf 9977999989999988999999999999-77--------99079998136
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=5.4e-05 Score=46.76 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=31.8
Q ss_pred EEEEEEECCCEECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 995799919920100102899479789999289994899999991698
Q 005532 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 427 ~~~v~~~y~~~~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
++.++.. +-..|++.++.+.+| .+.|+|+|||||||++..|.-.+
T Consensus 4 l~~l~l~--Nf~~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 4 FRSLTLI--NWNGFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEEE--EETTEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EEEEEEE--CCCCEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 5699997--826870279974998-08998899998799999999996
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.46 E-value=0.0011 Score=38.22 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 796999996898418999999977999
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.|.++.|+||+|+|||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.42 E-value=0.00029 Score=42.04 Aligned_cols=26 Identities=31% Similarity=0.325 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689841899999997799999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~ 150 (692)
.+.|+||+|+|||||++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998899971999999999999977
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.42 E-value=0.0061 Score=33.42 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 796999996898418999999977999
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
...-+.|.||.|+|||+|.+.|++...
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 887578878998763047788787718
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.40 E-value=0.00087 Score=38.90 Aligned_cols=27 Identities=26% Similarity=0.436 Sum_probs=23.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 978999928999489999999169899
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
|..+.|+||+|||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 749999899999999999999845899
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.37 E-value=0.0013 Score=37.83 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=21.9
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 779699999689841899999997799
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
|+|-.++|.|+.||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 998889998289998899999999985
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.36 E-value=0.001 Score=38.49 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.0
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 779699999689841899999997799
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
..+.++.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=96.34 E-value=0.0058 Score=33.54 Aligned_cols=22 Identities=50% Similarity=0.665 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689841899999997799
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+.+.||.|||||+|.+.|+.+.
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.33 E-value=0.00048 Score=40.59 Aligned_cols=35 Identities=17% Similarity=0.320 Sum_probs=29.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf 79699999689841899999997799999617998
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~ 156 (692)
+|..++++|++|.|||||++.|.|...-..|.|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred CCCEEEEECCCCCCHHHHHHHHCCHHHHHHCCCCC
T ss_conf 35649998778734878987515176764035553
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.32 E-value=0.0011 Score=38.21 Aligned_cols=24 Identities=21% Similarity=0.356 Sum_probs=20.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
..++|+|+.|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 289998999998999999999984
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.28 E-value=0.0013 Score=37.74 Aligned_cols=25 Identities=32% Similarity=0.292 Sum_probs=21.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999928999489999999169899
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
.++|+|++|||||||++-|+..+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 8999918999899999999999997
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.28 E-value=0.0012 Score=37.94 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=22.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 779699999689841899999997799
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+|-++.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.23 E-value=0.0014 Score=37.62 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=10.2
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689841899999997
Q 005532 125 KVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~ 144 (692)
++||.|+.|||||||.+.|.
T Consensus 24 iIgI~G~~GSGKSTla~~L~ 43 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLS 43 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99978988789999999999
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.22 E-value=0.0018 Score=36.89 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 797899992899948999999916989
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|..|.|+|+.||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 985999988999988999999999959
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.21 E-value=0.0014 Score=37.65 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.3
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 97796999996898418999999977999996
Q 005532 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (692)
Q Consensus 120 i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~ 151 (692)
+..+.-+.|+|+.||||||||++|++.+++..
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHCCCEEEEEECCCCCHHHHHHHHHHCCCCC
T ss_conf 98378889994035662578999865301456
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.016 Score=30.62 Aligned_cols=38 Identities=32% Similarity=0.400 Sum_probs=25.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCC
Q ss_conf 96999996898418999999977999996179987787569998256
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~ 169 (692)
-.+++++||+|+||||.+-=|+-.+. .. +.+|+.+.-+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~-~~--------g~kV~lit~D 46 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE-QQ--------GKSVMLAAGD 46 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH-TT--------TCCEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCCEEEEECC
T ss_conf 97999989999998999999999999-77--------9947998232
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.028 Score=29.13 Aligned_cols=143 Identities=13% Similarity=0.160 Sum_probs=60.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECC---CCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 47978999928999489999999169899713899877---532000221320110698844999999971104499999
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE---HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~---~~~~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~ 524 (692)
.+|..+-|+|+.|+|||||+.-|+-.+. .|.-.++. ......|+.... ....+...+.............
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ia--~g~~~~~~~~~~~~~vl~~~~E~-----~~~~~~~Rl~~~~~~~~~~~~~ 99 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAED-----PPTAIHHRLHALGAHLSAEERQ 99 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSS-----CHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHH--CCCCCCCCCCCCCCCEEEEECCC-----HHHHHHHHHHHHHHCCCHHHHH
T ss_conf 5895899992899989999999999997--69972111235787368985123-----4999999999986236866653
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC-----CHHHHHHHHHHH----HHCCCEEEE
Q ss_conf 99844699932001367989978999999999863699679984788999-----988799999999----742956999
Q 005532 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHL-----DIPSKEMLEEAI----SEYKGTVIT 595 (692)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~L-----D~~s~~~l~~~L----~~~~~tvI~ 595 (692)
.....+.+.. ......... -......+ .....+++++++|--++-. |......+...| ..++.++|+
T Consensus 100 ~~~~~~~~~~-~~~~~~~~~--~~~~~~~~-~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~ 175 (274)
T d1nlfa_ 100 AVADGLLIQP-LIGSLPNIM--APEWFDGL-KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVF 175 (274)
T ss_dssp HHHHHEEECC-CTTSCCCTT--SHHHHHHH-HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEE
T ss_pred CCCCCCEECC-CCCCCCHHH--HHHHHHHH-HHHCCCCCEEECCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEH
T ss_conf 1233323214-567420357--89999998-8752676589628135422665232256899998877776447975401
Q ss_pred EECCHH
Q ss_conf 916988
Q 005532 596 VSHDRY 601 (692)
Q Consensus 596 VSHd~~ 601 (692)
|.|-..
T Consensus 176 v~H~~K 181 (274)
T d1nlfa_ 176 LHHASK 181 (274)
T ss_dssp EEEC--
T ss_pred HHHCCC
T ss_conf 310055
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.18 E-value=0.018 Score=30.30 Aligned_cols=33 Identities=27% Similarity=0.341 Sum_probs=26.1
Q ss_pred CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 001028994797899992899948999999916
Q 005532 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 440 l~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g 472 (692)
|+.+..-+.+|+.+.|.|+.|+|||||+.-++-
T Consensus 25 lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 888746978980899994799979999999997
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.14 E-value=0.015 Score=30.81 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=26.1
Q ss_pred HHHHHHHHHHCCCCCEEEECCCC-CCCCHHHHHHHHHHHC
Q ss_conf 99999999981399959971789-9999988999999872
Q 005532 265 QMRMSLGKILLQDPDLLLLDEPT-NHLDLDTIEWLEGYLG 303 (692)
Q Consensus 265 kqRvaLAraL~~~p~iLLLDEPt-s~LD~~~~~~l~~~L~ 303 (692)
-.+-..+.+...+.|++|.|=|- ++.|..-...+..+.+
T Consensus 81 ~~~~~~~~~~~~~~d~ilIDTaGr~~~d~~~~~el~~~~~ 120 (213)
T d1vmaa2 81 VAFDAVAHALARNKDVVIIDTAGRLHTKKNLMEELRKVHR 120 (213)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECCCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8788789998769998998245533016888899888876
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.10 E-value=0.0005 Score=40.50 Aligned_cols=31 Identities=32% Similarity=0.490 Sum_probs=25.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 7899992899948999999916989971389
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i 481 (692)
..|.|+|++|+|||||++.++..+....+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCEE
T ss_conf 6999988999719999999999999779979
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.10 E-value=0.00079 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=18.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.+++|+|.+|||||||+.-|...+.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~ 26 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAV 26 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 0999980999989999999999998
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.08 E-value=0.00092 Score=38.77 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=22.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 789999289994899999991698997
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~~p~ 477 (692)
..++|+|.+|||||||+.-|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 099998099998999999999999867
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.08 E-value=0.002 Score=36.52 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999918998399999999998
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.05 E-value=0.0025 Score=35.96 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=20.9
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 96999996898418999999977999
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
..++.|.|+.||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.96 E-value=0.0024 Score=36.07 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|+.|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.95 E-value=0.0028 Score=35.61 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=20.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.+++|.|+.||||||+++.|+-.+.
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 8899989999898999999999998
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0026 Score=35.84 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++||.|+.|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0019 Score=36.72 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79699999689841899999997799
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+|-++.|+|+.||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.88 E-value=0.0026 Score=35.80 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|+|+|+.|+|||||++.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHCCCC
T ss_conf 99998999987999999852987
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.86 E-value=0.0032 Score=35.24 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=22.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 77969999968984189999999779
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
|+|-.+.|+||-||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99638999899999889999999998
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0026 Score=35.83 Aligned_cols=23 Identities=48% Similarity=0.466 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.|+|+.||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.85 E-value=0.039 Score=28.15 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=26.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCC
Q ss_conf 7969999968984189999999779999961799877875699982567
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~ 170 (692)
.-.++++|||+|+||||.+-=|+-.+. . .+.+|+++.=+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~--------~g~kV~lit~Dt 50 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K--------KGFKVGLVGADV 50 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-H--------TTCCEEEEECCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCCEEEEEEEC
T ss_conf 998999989999998999999999999-7--------799369997202
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.85 E-value=0.0025 Score=35.96 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899992899948999999916989
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+|+|+|+.|+|||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 2899989999989999999999849
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.84 E-value=0.04 Score=28.12 Aligned_cols=36 Identities=22% Similarity=0.168 Sum_probs=25.4
Q ss_pred HHHHHHHCCCCCEEEECCCC-CCCCHHHHHHHHHHHC
Q ss_conf 99999981399959971789-9999988999999872
Q 005532 268 MSLGKILLQDPDLLLLDEPT-NHLDLDTIEWLEGYLG 303 (692)
Q Consensus 268 vaLAraL~~~p~iLLLDEPt-s~LD~~~~~~l~~~L~ 303 (692)
.++..+...+.+++|.|=|- ++.|..-.+.+..+.+
T Consensus 83 ~~~~~~~~~~~d~vlIDTaGr~~~d~~~~~el~~~~~ 119 (207)
T d1ls1a2 83 RVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 119 (207)
T ss_dssp HHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHHHH
T ss_conf 8988876336764033454420000366889999986
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.82 E-value=0.023 Score=29.70 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|...+|||||++.|.|.-
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.79 E-value=0.0029 Score=35.51 Aligned_cols=22 Identities=36% Similarity=0.483 Sum_probs=16.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.+.|+|+.||||||+.+.|+-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 7989899999989999999999
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.78 E-value=0.0031 Score=35.37 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|||.|+.|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789887899999999999836
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=95.71 E-value=0.0034 Score=35.08 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=19.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78999928999489999999169
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
..|.|+|+.|||||||.+.|...
T Consensus 3 klIii~G~pGsGKTTla~~L~~~ 25 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK 25 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79999899999999999999995
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.71 E-value=0.0037 Score=34.86 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=19.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.++.|+|+.||||||+.+.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 0899989999998999999999809
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.67 E-value=0.0025 Score=35.88 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
-++|+||+||||+||++.|+...+
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 699989999998999999997488
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.66 E-value=0.0041 Score=34.51 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79699999689841899999997799
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+|.++++-|+.||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 98789998998887999999999999
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0045 Score=34.29 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 797899992899948999999916989
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|..+.|+||+|+|||||++.|....+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 980999999999999999999986398
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.65 E-value=0.0044 Score=34.34 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4797899992899948999999916989
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
++|-+|.|.|+.||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 9988899982899988999999999858
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.64 E-value=0.026 Score=29.34 Aligned_cols=22 Identities=32% Similarity=0.581 Sum_probs=14.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|+|..++|||||++.|.|.
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~ 39 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQ 39 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999889999899999998589
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.63 E-value=0.0036 Score=34.89 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=16.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689841899999997799
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++|+||+||||+||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.61 E-value=0.0041 Score=34.53 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.++|+|..|+|||||++.|.|...
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899989999869999999858984
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.61 E-value=0.0035 Score=35.02 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=16.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
..+.|+||+|+||+||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.61 E-value=0.0041 Score=34.55 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|+|+|+.|+|||||++.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89998999986999999985898
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0061 Score=33.43 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=25.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99779699999689841899999997799
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
-+++|+++.|.|+.|||||||+.-++...
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 98599799999589999999999999999
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0039 Score=34.65 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 479789999289994899999991698
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+.+..+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 987189998999989899999999986
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.51 E-value=0.0046 Score=34.21 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|||.|+.|||||||.+.|+..+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999787999999999996
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.48 E-value=0.0052 Score=33.89 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|..|+|||||++.|.|.-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999997787
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.005 Score=33.99 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 779699999689841899999997799
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+|-+++|.|+-||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 980599998998889999999999999
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.48 E-value=0.0039 Score=34.69 Aligned_cols=41 Identities=12% Similarity=0.238 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCC
Q ss_conf 999996898418999999977999996179987787569998256756
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~~~ 172 (692)
++||.|++||||||+.+.|...+.-.. ...++..++++-+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-------~~~~v~~Is~D~F~ 122 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-------EHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-------TCCCEEEEEGGGGB
T ss_pred EEEEECCCCCCCCHHHHHHHHHHHHHC-------CCCCEEEEEEEEEE
T ss_conf 999968999987689999999973046-------89965999521568
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.46 E-value=0.0051 Score=33.94 Aligned_cols=24 Identities=46% Similarity=0.612 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789999289994899999991698
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
=+|||+|..|+|||||++.|.|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 889999999999999999997787
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.45 E-value=0.0057 Score=33.59 Aligned_cols=23 Identities=30% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|+|+|+.|+|||||++.|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 79998999997899999995888
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.44 E-value=0.0055 Score=33.69 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7796999996898418999999977999
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.+|.++++-|+.||||||+++.|.-.+.
T Consensus 1 ~kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 1 GRGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9768999989988869999999999997
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.44 E-value=0.0047 Score=34.18 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|||.|+.||||||+.+.|...+.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 999968999987689999999973
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.39 E-value=0.0044 Score=34.32 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=18.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
-+++|||+.|+|||||++.+.+...
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 7899999999898999999967887
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.39 E-value=0.0058 Score=33.57 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|+.|+|||||++.|.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999998999999996777
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.38 E-value=0.0051 Score=33.93 Aligned_cols=25 Identities=32% Similarity=0.250 Sum_probs=20.6
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999689841899999997799
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
..++.|+||-||||||+.+.|+-.+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9489998999998899999999997
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.33 E-value=0.0054 Score=33.78 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.7
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 479789999289994899999991698
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
..|-.|-|+|..||||||+.+.|+..+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 997699988999999999999999998
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.32 E-value=0.0051 Score=33.92 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97899992899948999999916989
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
...|.|.|+.||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 85999989999998999999999728
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.31 E-value=0.0051 Score=33.93 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
..+.|.||.|||||||.+.|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999889799889999999999865
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.31 E-value=0.0067 Score=33.15 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+++|+|..|+|||||++.|.|.-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.26 E-value=0.0034 Score=35.05 Aligned_cols=27 Identities=30% Similarity=0.362 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 796999996898418999999977999
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.24 E-value=0.0062 Score=33.35 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689841899999997
Q 005532 125 KVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~ 144 (692)
++||+|+.||||||+++++.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99988888788999999999
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.24 E-value=0.0065 Score=33.24 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|+.|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.18 E-value=0.0075 Score=32.81 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 78999928999489999999169899
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
..|+|.|+.||||||+.+.|+..+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 88999899998989999999999987
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.0074 Score=32.88 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999689841899999997799
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
|=.++++|+.++|||||++.|.|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9899998999998999999996888
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.12 E-value=0.005 Score=33.96 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97899992899948999999916989
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.-|+.|+|+.|+|||||++.|.+-..
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 77899999999898999999967887
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.12 E-value=0.034 Score=28.52 Aligned_cols=25 Identities=40% Similarity=0.566 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.-+.|.||.|||||++.+.|+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 8678668998882289999999829
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.12 E-value=0.0047 Score=34.14 Aligned_cols=25 Identities=32% Similarity=0.247 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999689841899999997799
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.-+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6199988999988899999999870
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.10 E-value=0.0065 Score=33.24 Aligned_cols=20 Identities=30% Similarity=0.587 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689841899999997
Q 005532 125 KVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~ 144 (692)
++||.|+.||||||+++.|.
T Consensus 5 IIgitG~~gSGKstva~~l~ 24 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLR 24 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 99998988778999999999
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.09 E-value=0.0066 Score=33.17 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99992899948999999916989
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
|.|+||+||||+||++.|+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99989999998999999997488
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.09 E-value=0.0074 Score=32.86 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.3
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 7796999996898418999999977
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G 145 (692)
+.-.++.++|+.||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.0077 Score=32.76 Aligned_cols=122 Identities=16% Similarity=0.165 Sum_probs=57.7
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCC--CEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 97899992899948999999916989971389987753--2000221320110698844999999971104499999998
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN--VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLL 527 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~--~~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~~~L 527 (692)
|=+|+++|+.|+|||||++.|.|.-....... .+.. .....+.... .. ... .
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~--------------~~~---------~ 54 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGREAAIVTDI--AGTTRDVLREHIHIDG-MP--------------LHI---------I 54 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSS--TTCCCSCEEEEEEETT-EE--------------EEE---------E
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEEECC--CCCCCCEEEEEEECCC-CE--------------EEE---------C
T ss_conf 98999989999989999999968886675124--6642204765320268-23--------------541---------3
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCHHHHHHHHHHHHHCC--CEEEEEECCHHHHH
Q ss_conf 44699932001367989978999999999863699679984-7889999887999999997429--56999916988898
Q 005532 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLD-EPTNHLDIPSKEMLEEAISEYK--GTVITVSHDRYFVK 604 (692)
Q Consensus 528 ~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLD-EPTn~LD~~s~~~l~~~L~~~~--~tvI~VSHd~~~i~ 604 (692)
+..|+ ...-...+......+......++++++. .+++..-......+.+.+.... ..+|+|..-.+...
T Consensus 55 d~~g~--------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~ 126 (161)
T d2gj8a1 55 DTAGL--------REASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 126 (161)
T ss_dssp ECCCC--------SCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred CCCCC--------CCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCHHHHHH
T ss_conf 65321--------2246520247899999998741332011025654203455544455542014101020465444335
Q ss_pred H
Q ss_conf 4
Q 005532 605 Q 605 (692)
Q Consensus 605 ~ 605 (692)
.
T Consensus 127 ~ 127 (161)
T d2gj8a1 127 E 127 (161)
T ss_dssp C
T ss_pred H
T ss_conf 5
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.07 E-value=0.011 Score=31.80 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
+++++|+.|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.05 E-value=0.0065 Score=33.24 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=19.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+.+.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.05 E-value=0.0049 Score=34.05 Aligned_cols=28 Identities=36% Similarity=0.400 Sum_probs=23.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9779699999689841899999997799
Q 005532 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 120 i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+..+.++.|+||-||||||+.+.|+-.+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 4678289998999998799999999986
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.05 E-value=0.0085 Score=32.47 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++|+|..++|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.00 E-value=0.0081 Score=32.63 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|+|+|+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999988999999996898
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.00 E-value=0.0085 Score=32.47 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|+|+|+.|+|||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 899999999989999999967775
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.99 E-value=0.0077 Score=32.77 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689841899999997799
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+.|+|+.||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998899999999983
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.99 E-value=0.006 Score=33.47 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++.|.||-||||||+.+.|+-.+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.98 E-value=0.0077 Score=32.77 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79699999689841899999997799
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+-.++.|+||-||||||+.+.|+..+
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 97289998999999899999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.97 E-value=0.0044 Score=34.36 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
-+||+|+.++|||||++.|.|.-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.96 E-value=0.078 Score=26.23 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 4797899992899948999999916
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g 472 (692)
+.-..|-++|..||||||+.+-++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9998999989999989999999997
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.95 E-value=0.009 Score=32.33 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|+|+|..|+|||||++.|.|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999999999999996888
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.94 E-value=0.0077 Score=32.76 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=17.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+++|+|+.|+|||||++.+.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.93 E-value=0.0077 Score=32.74 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+++||..|+|||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.93 E-value=0.0078 Score=32.71 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|+.|+|||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.90 E-value=0.009 Score=32.31 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|+|+|+-|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89999189983999999999988
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.90 E-value=0.0093 Score=32.21 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++.|+||-||||||+.+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=94.90 E-value=0.0075 Score=32.83 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|+|+.||||||+.+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 79898999999899999999997
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.88 E-value=0.0082 Score=32.59 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.++.|.|+.||||||+.+.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989899898999999999998
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.88 E-value=0.0095 Score=32.15 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++.++|..||||||+.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999999999999999
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0084 Score=32.51 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|.|+|+.||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 49998999999999999999996
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.86 E-value=0.0065 Score=33.23 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689841899999997799
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++|+|..++|||||++.|.|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.84 E-value=0.0056 Score=33.67 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|||+|+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69998999987999999996899
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.81 E-value=0.0088 Score=32.38 Aligned_cols=22 Identities=45% Similarity=0.726 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999289994899999991698
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
|.|+||+||||+||.+.|+...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 9999999999999999999748
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0092 Score=32.25 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=10.6
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 89999289994899999991
Q 005532 452 KTAIIGPNGCGKSTLLKLIM 471 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~ 471 (692)
+|||+|+-|+|||||+.-|.
T Consensus 56 ~IgitG~pGaGKSTLi~~l~ 75 (327)
T d2p67a1 56 RLGVTGTPGAGKSTFLEAFG 75 (327)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
T ss_conf 89743899998999999999
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.81 E-value=0.0084 Score=32.50 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=22.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 779699999689841899999997799
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.-++||+|+.|+|||||+..|...+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 983289743899998999999999999
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.80 E-value=0.01 Score=31.94 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
++||+|..||||||.++++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999789886889999999998
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.79 E-value=0.01 Score=31.88 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.|+||-||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=94.79 E-value=0.0076 Score=32.78 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+.|+|+.||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899989999998999999999809
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.77 E-value=0.0096 Score=32.14 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.|+|+.||||||+.+.|+-.+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.77 E-value=0.0092 Score=32.26 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++.|+|+.|+|||||++.+.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.014 Score=31.14 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
|++|+|+.|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.72 E-value=0.011 Score=31.74 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+++|-||.||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99978999879899999999996
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.72 E-value=0.0096 Score=32.14 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+++|||..|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996798
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.71 E-value=0.015 Score=30.83 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
++.++|+.|+|||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 999999999899999999808998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.68 E-value=0.014 Score=31.15 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.5
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9977969999968984189999999779
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
=+++|.++.|.|+.|||||||+.-++-.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 9869969999838999889999999998
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.033 Score=28.64 Aligned_cols=49 Identities=18% Similarity=0.230 Sum_probs=27.7
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHHCC--CCCEEEEEECCHHHH-HHHCCEEE
Q ss_conf 995997178999999889999998724--998399994398889-84448589
Q 005532 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIV 327 (692)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~--~~~tvIivsHd~~~l-~~~~~~i~ 327 (692)
..++++||.=. |.......|...+.. ....+|++|++..-+ +.+-.++.
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~ 167 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCL 167 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSE
T ss_pred CEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHC
T ss_conf 87999978110-89999999999985689886999973885636765761210
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.68 E-value=0.0067 Score=33.13 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999289994899999991698
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
|||+|+.++|||||++.|.|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHHCCC
T ss_conf 9998999998999999996899
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.64 E-value=0.012 Score=31.49 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++.|+||-||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.60 E-value=0.014 Score=31.13 Aligned_cols=27 Identities=26% Similarity=0.471 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 797899992899948999999916989
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+..+++||++|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 977999989999988999999999999
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.012 Score=31.42 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
.|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999979999899999999589
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.57 E-value=0.012 Score=31.39 Aligned_cols=23 Identities=43% Similarity=0.502 Sum_probs=15.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999968984189999999779
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
-.++|+|..|+|||||++.|.+.
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHCC
T ss_conf 79999999998989999999668
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.57 E-value=0.015 Score=30.81 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.+.|.||.|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.56 E-value=0.012 Score=31.47 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=22.1
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79789999289994899999991698
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+.=+|.|+|..|+|||||++-|.+..
T Consensus 14 k~~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 14 QEHKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 85799999999989899999996688
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=94.52 E-value=0.012 Score=31.46 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|||+|..||||||+.+.|...
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999898877899999999987
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.52 E-value=0.013 Score=31.21 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998998789999999999999
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.52 E-value=0.011 Score=31.67 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
||.|+|+.|+|||||++-+.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999996598
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.52 E-value=0.012 Score=31.52 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=17.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689841899999997799
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+.|.||.|+||||++++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9997899974879999999998
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.49 E-value=0.013 Score=31.17 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+++|.||.||||||+.+.|+..+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89977999889899999999996
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.47 E-value=0.014 Score=31.12 Aligned_cols=41 Identities=20% Similarity=0.147 Sum_probs=25.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCC
Q ss_conf 99999689841899999997799999617998778756999825675
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~~ 171 (692)
++||-|+.|||||||...|.-.+....| ....+..++.+-+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~------~~~~v~~iS~Ddf 69 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHLMEKYG------GEKSIGYASIDDF 69 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHG------GGSCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHC------CCCCEEEECCCCC
T ss_conf 9983799878899999999999998727------7860676356777
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.46 E-value=0.013 Score=31.18 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 77969999968984189999999779
Q 005532 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.+|.++.+.|.+||||||+.+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99869999899999989999999988
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.44 E-value=0.012 Score=31.49 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|+|+|+.|+|||||++.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999988999999996799
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.44 E-value=0.015 Score=30.82 Aligned_cols=24 Identities=13% Similarity=0.444 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789999289994899999991698
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
..+.|+||+|+||+||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 719999989999999999999709
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.44 E-value=0.0094 Score=32.20 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|+|-|.-||||||+++.|...+.
T Consensus 11 ~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 11 TVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp EEEEECSTTSCHHHHHHTTGGGTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999889999888999999998707
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.008 Score=32.63 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 797899992899948999999916989
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+..|+|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 998899987888779999999999973
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.38 E-value=0.019 Score=30.14 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9779699999689841899999997
Q 005532 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 120 i~~Ge~~~lvG~nGsGKSTLl~~L~ 144 (692)
+++|+++.|.|+.|+|||+|+.-++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 9698399999479999999999999
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.37 E-value=0.014 Score=31.15 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.+.|+||-||||||+.+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
T ss_conf 8999879999989999999998
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.33 E-value=0.0062 Score=33.35 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=28.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCCCC
Q ss_conf 6999996898418999999977999996179987787569998256756
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~~~ 172 (692)
=++||.|++||||||+.+.|...+.. .+.++..++++...
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~~---------~~v~~~iI~~Dsfy 44 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFRR---------EGVKAVSIEGDAFH 44 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHH---------HTCCEEEEEGGGGB
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH---------CCCCEEEEECCCCC
T ss_conf 89999899978099999999999715---------69976999477787
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.32 E-value=0.011 Score=31.66 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCC
Q ss_conf 999996898418999999977999996
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~~ 151 (692)
.+.+.||.|+||||+.++|+..+....
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCC
T ss_conf 489879999738899999985038885
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.0076 Score=32.80 Aligned_cols=26 Identities=27% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79789999289994899999991698
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|-.|-|+|..||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99699988999999999999999999
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.29 E-value=0.018 Score=30.38 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=23.5
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 479789999289994899999991698
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
++|-++.|+|+-||||||+.+.|+..+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 996389998999998899999999986
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.28 E-value=0.033 Score=28.61 Aligned_cols=23 Identities=30% Similarity=0.611 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|||.-.+|||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred EEEEEECCCCCHHHHHHHHHCCC
T ss_conf 59998189897999999996899
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.27 E-value=0.015 Score=30.78 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
.|||+|..||||||+.+++...
T Consensus 4 iIgITG~igSGKStv~~~l~~~ 25 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTDL 25 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9998888878899999999987
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.23 E-value=0.017 Score=30.58 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.|+||-||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=94.21 E-value=0.02 Score=30.07 Aligned_cols=28 Identities=21% Similarity=0.260 Sum_probs=24.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9779699999689841899999997799
Q 005532 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 120 i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+++|+++.|.|+.|+|||||+.-++-..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 6288599999179999899999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.19 E-value=0.019 Score=30.21 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.1
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 4797899992899948999999916989
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
..|-.|+|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 9805999989988899999999999998
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.18 E-value=0.016 Score=30.75 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|+.|+|||||++.+.+..
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.18 E-value=0.02 Score=30.00 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.0
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99779699999689841899999997
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~ 144 (692)
=+++|.++.|.|+.|||||||.--++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.17 E-value=0.017 Score=30.55 Aligned_cols=28 Identities=39% Similarity=0.245 Sum_probs=19.4
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9779699999689841899999997799
Q 005532 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 120 i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|.++.|.|+-|||||||.|.++.-+
T Consensus 30 ~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 30 TEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7998299996687765889999987642
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.14 E-value=0.12 Score=25.02 Aligned_cols=24 Identities=21% Similarity=0.138 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 969999968984189999999779
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
..+++|+|.-|.|||||.+.+...
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 408999779978889999999985
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.13 E-value=0.027 Score=29.19 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 797899992899948999999916989971389
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i 481 (692)
+|..|+|-|.-||||||++++|...+.. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCEE
T ss_conf 7689999899888699999999999971-9779
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.018 Score=30.31 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++.|+||-||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.08 E-value=0.02 Score=30.10 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=20.6
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 79699999689841899999997799
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 59879998699982999999999977
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.03 E-value=0.026 Score=29.28 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=24.4
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9947978999928999489999999169
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
-|++|+.+-|.|+.|+|||||..-++..
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 9859979999958999999999999999
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=94.03 E-value=0.017 Score=30.48 Aligned_cols=36 Identities=31% Similarity=0.277 Sum_probs=29.0
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 0351249997796999996898418999999977999
Q 005532 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 112 iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
+++- =+.|.+|++.+|+|+.|+|||||+..|+....
T Consensus 33 ~ID~-l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 33 VLDL-ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp HHHH-HSCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred EEEE-CCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 5641-25645787556867999887899999999775
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.0083 Score=32.53 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9789999289994899999991698
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.-+|+|+|+.++|||||++.|.+..
T Consensus 16 ~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 16 GIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 9789998899998999999985898
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=0.022 Score=29.77 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 797899992899948999999916989
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|..|+|-|.-||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 987899989988879999999999999
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.043 Score=27.91 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|+|..|+|||||++-+.+.
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.95 E-value=0.019 Score=30.26 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.-+.++||.|||||.|.++|+...
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC
T ss_conf 669998999988889999986213
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.94 E-value=0.018 Score=30.32 Aligned_cols=27 Identities=15% Similarity=0.075 Sum_probs=24.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 997796999996898418999999977
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G 145 (692)
=|++|.++.|.|+.|||||||..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.94 E-value=0.023 Score=29.66 Aligned_cols=25 Identities=40% Similarity=0.654 Sum_probs=21.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899992899948999999916989
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.-+-+.||.|+|||++.+.|+..+.
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCCCHHHHHHHHHCC
T ss_conf 8678668998882289999999829
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.91 E-value=0.021 Score=29.92 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999689841899999997799
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.=.+.|+||-||||||+.+.|+-.+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 2169998899998799999999997
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.89 E-value=0.019 Score=30.16 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689841899999997799
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+.+.||.|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.86 E-value=0.019 Score=30.22 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|.|+|+.||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 39998999998899999999983
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.85 E-value=0.019 Score=30.23 Aligned_cols=43 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHHH
Q ss_conf 399959971789999998899999987249983999943988898
Q 005532 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLD 320 (692)
Q Consensus 276 ~~p~iLLLDEPts~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l~ 320 (692)
.+--|+++| ...|+.+.+.+.+. ++...+..+|++-...+.+.
T Consensus 94 ~D~~ilVvd-a~~g~~~~~~~~~~-~~~~~~~p~iivlNK~D~~~ 136 (227)
T d1g7sa4 94 ADLAILIVD-INEGFKPQTQEALN-ILRMYRTPFVVAANKIDRIH 136 (227)
T ss_dssp CSEEEEEEE-TTTCCCHHHHHHHH-HHHHTTCCEEEEEECGGGST
T ss_pred CCEEEEEEE-CCCCCCCCHHHHHH-HHHCCCCEEEEEEECCCCCC
T ss_conf 645899986-12376320257777-76437975999998930788
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.78 E-value=0.033 Score=28.62 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997796999996898418999999977999
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
=|+.|.++.|.|+.|||||||+-.++....
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf 966735899805777478999999999987
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.77 E-value=0.016 Score=30.64 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=29.3
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 100102899479789999289994899999991698
Q 005532 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 439 ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+++.+ +.|..|++++|+|+.|+|||||+..|+...
T Consensus 33 ~ID~l-~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 33 VLDLA-SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHHH-SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 56412-564578755686799988789999999977
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.76 E-value=0.02 Score=30.07 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++++|..|+|||||++.+.+.
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=93.76 E-value=0.022 Score=29.78 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=21.5
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9789999289994899999991698
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
..+|.|+|+-||||||+.+.|+..+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 9489998999998899999999997
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.75 E-value=0.028 Score=29.09 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++++|+.|+|||||++.+.+.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999996989999999709
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.75 E-value=0.02 Score=30.07 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999928999489999999169899
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
-+-|+||.|||||||.+.|++.+..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHC
T ss_conf 9998897998899999999998651
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.74 E-value=0.14 Score=24.53 Aligned_cols=131 Identities=17% Similarity=0.111 Sum_probs=60.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC----CC-EEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 97899992899948999999916989----97-13899877532000221320110698844999999971104499999
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEK----PR-GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~----p~-~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~ 524 (692)
...++|+|.-|.|||||.+.+..... .. .|.+++. +.+.. ....+. ..+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~--------vs~~~-----~~~~l~------------~~~~ 98 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK--------DSGTA-----PKSTFD------------LFTD 98 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE--------CCCCS-----TTHHHH------------HHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE--------ECCCC-----CHHHHH------------HHHH
T ss_conf 4089997799788899999999855655401276489999--------36877-----777899------------9999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHH
Q ss_conf 998446999320013679899789999999998-6369967998478899998879999999974295699991698889
Q 005532 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKF-MVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFV 603 (692)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LAra-ll~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~tvI~VSHd~~~i 603 (692)
..+...+.. ...+.+...-......+..+... +..+.-++|||..- |....++ +...+.-+|++|-+....
T Consensus 99 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~---~~~~~~~----~~~~~srilvTTR~~~v~ 170 (277)
T d2a5yb3 99 ILLMLKSED-DLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV---QEETIRW----AQELRLRCLVTTRDVEIS 170 (277)
T ss_dssp HHHHHTTTS-CCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC---CHHHHHH----HHHTTCEEEEEESBGGGG
T ss_pred HHHHHHCCH-HHCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHH---HHHHHHH----HCCCCCEEEEEEEHHHHH
T ss_conf 999872202-20278632123369999999999844688167525066---7766555----204575599996448999
Q ss_pred HHHCC--EEEEE
Q ss_conf 84366--89999
Q 005532 604 KQIVN--RVVEV 613 (692)
Q Consensus 604 ~~~~d--~i~~l 613 (692)
..+.. +++.+
T Consensus 171 ~~~~~~~~~~~l 182 (277)
T d2a5yb3 171 NAASQTCEFIEV 182 (277)
T ss_dssp GGCCSCEEEEEC
T ss_pred HHCCCCCCEEEC
T ss_conf 863788716877
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.73 E-value=0.0089 Score=32.35 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=16.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|||.|.+||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999780999999999997
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.69 E-value=0.023 Score=29.69 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+.|.|+.||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 999989899898999999999998
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.024 Score=29.57 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
.|||+|..||||||..+++...
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9997898868899999999987
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.63 E-value=0.021 Score=29.87 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
|++++|+.|+|||||++-+.+-.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999969899999997098
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.62 E-value=0.021 Score=29.91 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=20.4
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789999289994899999991698
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+.|-|+|+.||||||+-+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 988998899998899999999994
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.61 E-value=0.031 Score=28.82 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.++|..|+|||||++-+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999991989999999739
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=93.61 E-value=0.026 Score=29.36 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=18.7
Q ss_pred CEEEEECCCCCCHHHHHHHHHC
Q ss_conf 6999996898418999999977
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
T ss_conf 8999979999889999999998
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=93.60 E-value=0.058 Score=27.06 Aligned_cols=34 Identities=29% Similarity=0.292 Sum_probs=24.6
Q ss_pred ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 00351249997796999996898418999999977
Q 005532 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 111 ~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G 145 (692)
..++...+.+ .|.-+.+.|++|+|||||...+..
T Consensus 4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3178999999-999999981899998999999998
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.58 E-value=0.014 Score=31.05 Aligned_cols=22 Identities=45% Similarity=0.519 Sum_probs=12.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHH
Q ss_conf 9699999689841899999997
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~ 144 (692)
-.++++|||+|+||||.+-=|+
T Consensus 11 p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 11 PFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
T ss_conf 9899998999998899999999
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.58 E-value=0.031 Score=28.83 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++++|+.|+|||||++.+.+.
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.03 Score=28.93 Aligned_cols=22 Identities=41% Similarity=0.581 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.++|..|+|||||++-+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999829
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.55 E-value=0.031 Score=28.83 Aligned_cols=24 Identities=33% Similarity=0.505 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.++++|...+|||||++.|.|...
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVWT 30 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999993458849999999970344
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.55 E-value=0.026 Score=29.28 Aligned_cols=25 Identities=36% Similarity=0.288 Sum_probs=16.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9699999689841899999997799
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
..++.++||+|+||||.+-=|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8689998999998899999999999
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.51 E-value=0.02 Score=30.00 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
++.|+|..||||||+-++|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
T ss_conf 48998899998899999999984
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.50 E-value=0.04 Score=28.09 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=18.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+++||.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 69997689897999999996898
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.49 E-value=0.021 Score=29.86 Aligned_cols=23 Identities=35% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|.|+-||||||+.+.|+..+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998899999899999999987
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=93.49 E-value=0.068 Score=26.60 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=21.4
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 035124999779699999689841899999997
Q 005532 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 112 iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~ 144 (692)
.++..-+.+ .|.-+.++|++|+|||||.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred EEEEEEEEE-CCEEEEEEECCCCCHHHHHHHHH
T ss_conf 289999999-99999998089999899999999
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.48 E-value=0.027 Score=29.25 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|.++|..||||||+.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999999999999999
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.047 Score=27.66 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++|+|..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.45 E-value=0.024 Score=29.56 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=14.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999971
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.43 E-value=0.019 Score=30.22 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=31.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCC-CCEEEEECCCC
Q ss_conf 699999689841899999997799999617998778-75699982567
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS-NMKIAFLSQEF 170 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~-~~~i~yv~Q~~ 170 (692)
.-+.+|||.|||||-|.+.|++.+.- --+..+.. -..+||+..+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT~fTeaGYvG~DV 95 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANA--PFIKVEATKFTEVGYVGKEV 95 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGGGGC----CCCCT
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCC--CEEEEECCEEEECCEEECCH
T ss_conf 64799899998899999999987389--88986255114111110444
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.41 E-value=0.032 Score=28.71 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++++|..|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.38 E-value=0.029 Score=29.04 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|||+|+-.+|||||++.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEECCCCCHHHHHHHHHHHC
T ss_conf 99999077870999999999743
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.36 E-value=0.034 Score=28.58 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=14.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++++|..|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996789999999868
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.36 E-value=0.025 Score=29.38 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++++|+.|+|||||++.+.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.35 E-value=0.029 Score=29.04 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++++|+.|+|||||++.+.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998999999999648
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.34 E-value=0.026 Score=29.32 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
++.++|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999998989999999719
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.32 E-value=0.027 Score=29.16 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|+|+|+.|+|||||++.|.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999989899999998099
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.31 E-value=0.031 Score=28.84 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=10.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
++||.|+=|+|||||+.-|..
T Consensus 53 ~igitG~pGaGKSTli~~l~~ 73 (323)
T d2qm8a1 53 RVGITGVPGVGKSTTIDALGS 73 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 986117998889999999999
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.30 E-value=0.026 Score=29.36 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=13.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 69999968984189999999779
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.+++|+|+-++||||||+.|.|.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~ 55 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGK 55 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHCCC
T ss_conf 99998899999799999998099
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.29 E-value=0.031 Score=28.80 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+++|+|+.|+|||||++.+.+..
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.28 E-value=0.027 Score=29.25 Aligned_cols=25 Identities=16% Similarity=0.348 Sum_probs=21.5
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 6999996898418999999977999
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.+++|-|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 1999989988859999999999873
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.037 Score=28.35 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|.++|..|+|||||++-+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997998999999999809
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.031 Score=28.81 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.|||.|+.|||||||...|.-.+
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99837998788999999999999
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.19 E-value=0.032 Score=28.74 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9789999289994899999991698
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
-.++.|+|+-||||||+.+.|+..+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 7289998999999899999999985
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.045 Score=27.76 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 999996898418999999977999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.+.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.17 E-value=0.028 Score=29.07 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
||.++|..|+|||||++-+.+-
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999719
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.035 Score=28.46 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=20.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
||.|+|..|+|||||++-+.+-.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999919899999996199
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.16 E-value=0.03 Score=28.89 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
-+.|.||.|||||++.+.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79988969998899999986201
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=93.15 E-value=0.022 Score=29.85 Aligned_cols=29 Identities=28% Similarity=0.279 Sum_probs=23.6
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 47978999928999489999999169899
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
.+.-.+-+.||.||||||.+..+...+..
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred HHHCEEEEECCCCCCCCHHHHHHHHHHCC
T ss_conf 41054898767877744779998666257
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.15 E-value=0.034 Score=28.59 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
||+++|..|+|||||++-+.+-
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998997989999999709
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.14 E-value=0.043 Score=27.92 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.11 E-value=0.028 Score=29.15 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
++.++|+.|+|||||++-+.+..
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999989999999996487
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.07 E-value=0.027 Score=29.21 Aligned_cols=23 Identities=39% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99996898418999999977999
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
+.+.||-|+||||+.+++++++.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.07 E-value=0.034 Score=28.56 Aligned_cols=24 Identities=42% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
+|+|-||.||||||+.+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999789998798999999999969
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.06 E-value=0.041 Score=28.03 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
||.++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999982
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.03 E-value=0.033 Score=28.63 Aligned_cols=30 Identities=23% Similarity=0.297 Sum_probs=23.2
Q ss_pred CEEEEECCCCCCHHHHHHHH-HCCCCCCCCE
Q ss_conf 69999968984189999999-7799999617
Q 005532 124 EKVGLVGVNGAGKTTQLRII-AGQEEPDSGN 153 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L-~G~~~p~~G~ 153 (692)
-.+.|+|..|+|||||++-+ .+...|+-|-
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~ 37 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGI 37 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCE
T ss_conf 7799998999988999998950982788886
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.02 E-value=0.046 Score=27.72 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9999968984189999999779999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p 149 (692)
-++++|...+|||||+..|+|....
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~~ 34 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWTS 34 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC-
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCH
T ss_conf 8999972488699999999704121
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.99 E-value=0.036 Score=28.43 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|+|+-||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999899999999987
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.98 E-value=0.0089 Score=32.36 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|+|..++|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 8999999999999999999589
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.038 Score=28.23 Aligned_cols=23 Identities=48% Similarity=0.703 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.++|+|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99998989939999999981885
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.90 E-value=0.0068 Score=33.09 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=20.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|+|+|+.++|||||++.|.|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 89999999999999999995899
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.90 E-value=0.033 Score=28.63 Aligned_cols=50 Identities=16% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHH-HHCCEE
Q ss_conf 69967998478899998879999999974295--6999916988898-436689
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVK-QIVNRV 610 (692)
Q Consensus 560 ~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~--tvI~VSHd~~~i~-~~~d~i 610 (692)
....++++||-- .+-......|...+..... .+|++++...-+. .+.+|.
T Consensus 108 ~~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~ 160 (231)
T d1iqpa2 108 ASFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 160 (231)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred CCCEEEEEHHHH-HCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHCHHHHHCCC
T ss_conf 872288614344-31214789876411247764478861487665657684731
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.90 E-value=0.042 Score=27.97 Aligned_cols=23 Identities=39% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
|+.++|..|+|||||++-+.+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 99999999967899999998688
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.049 Score=27.51 Aligned_cols=24 Identities=38% Similarity=0.743 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
||.++|..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 999999899299999999972867
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.032 Score=28.71 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
+|.|+|..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999999799999999973
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.022 Score=29.79 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=20.1
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 7899992899948999999916989
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
..+.+||+||+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 7999989999998999999999999
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.044 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=15.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++|+|..|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899298999999971
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.84 E-value=0.033 Score=28.67 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
-+.++||.|+|||.|.+.|+..+.
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 699989999888899999862132
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.045 Score=27.76 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=15.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.+++||+.|+|||||++.+.+.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999993999999999629
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=92.82 E-value=0.039 Score=28.18 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|+|+-||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899998799999999987
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.045 Score=27.74 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
++.++|..|+|||||++-+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 999989899399999999818856
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.037 Score=28.32 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=17.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999689841899999997799
Q 005532 126 VGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
+.+.||.|+||||++++++..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9998899987054699999997
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.78 E-value=0.051 Score=27.40 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+-|.||.|+||||++++|+..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 499987999988899999999987
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.74 E-value=0.04 Score=28.07 Aligned_cols=24 Identities=38% Similarity=0.524 Sum_probs=20.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 899989987899999999999998
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.74 E-value=0.04 Score=28.10 Aligned_cols=23 Identities=26% Similarity=0.293 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|+|+-||||||..+.|+..+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99997999999899999999986
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.05 Score=27.48 Aligned_cols=23 Identities=43% Similarity=0.524 Sum_probs=19.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
|+.++|..|+|||||++-+.+-.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999939999999996299
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.68 E-value=0.014 Score=31.11 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9699999689841899999997799999
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~~p~ 150 (692)
|..+.|+|+-|+|||||++.+++.+++.
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~~ 55 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPEI 55 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9708998899852999999998737982
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.65 E-value=0.047 Score=27.61 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 78999928999489999999169
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
-+|.|+|..|+|||||++-+.+.
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHC
T ss_conf 38999998992989999999719
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=92.64 E-value=0.048 Score=27.57 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 797899992899948999999916989
Q 005532 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 449 ~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+..+.|.|+.|+|||||++-++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 598799986999829999999999779
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.62 E-value=0.053 Score=27.32 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|+|..|+|||||++-+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.59 E-value=0.061 Score=26.91 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=24.1
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 994797899992899948999999916
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~g 472 (692)
-|++|..+-|.|+.|+|||||..-++-
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 986996999983899988999999999
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.58 E-value=0.051 Score=27.39 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|.|+|..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993999999999719
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.55 E-value=0.039 Score=28.20 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=15.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++|+|+.|+|||||++-+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999799999999984
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.54 E-value=0.039 Score=28.19 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=16.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.54 E-value=0.038 Score=28.22 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|+|..|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=92.51 E-value=0.071 Score=26.49 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689841899999997799999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~ 150 (692)
++.|=|+-|+||||+++.|...+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCC
T ss_conf 99998886678999999999986569
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=92.51 E-value=0.045 Score=27.75 Aligned_cols=41 Identities=24% Similarity=0.196 Sum_probs=28.2
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCE--EEEEECCCCC
Q ss_conf 4797899992899948999999916989971--3899877532
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNV 488 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~--G~i~~~~~~~ 488 (692)
+.|-.|-|.|.+||||||+.+.|...+.... -.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHH
T ss_conf 9986999989999998999999998877742750899753678
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=92.48 E-value=0.06 Score=26.95 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=22.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC-CC
Q ss_conf 899992899948999999916989-97
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK-PR 477 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~-p~ 477 (692)
++++||.-++|||||++.|.|..- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred EEEEEECCCCCHHHHHHHHHCCCCCCC
T ss_conf 599981898979999999968997887
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.48 E-value=0.046 Score=27.68 Aligned_cols=28 Identities=29% Similarity=0.334 Sum_probs=22.8
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9699999689841899999997799999
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPD 150 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~G~~~p~ 150 (692)
...+.|.||-|+||||+++.|+..+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 8816888989998999999999997544
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=92.47 E-value=0.043 Score=27.87 Aligned_cols=27 Identities=30% Similarity=0.412 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 999928999489999999169899713
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~~p~~G 479 (692)
+-+.||.|+||||+.++|+..+....+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 898799997388999999850388853
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.051 Score=27.40 Aligned_cols=21 Identities=38% Similarity=0.569 Sum_probs=15.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
+++|+|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999198999999972
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.43 E-value=0.031 Score=28.85 Aligned_cols=21 Identities=38% Similarity=0.578 Sum_probs=13.9
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++++|+.|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999988733
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.42 E-value=0.039 Score=28.17 Aligned_cols=26 Identities=23% Similarity=0.239 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 97899992899948999999916989
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
..++.+|||+|+||||.+-=|+..+.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 98999989999998999999999999
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.041 Score=28.02 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
+++|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.42 E-value=0.035 Score=28.49 Aligned_cols=42 Identities=12% Similarity=0.260 Sum_probs=25.5
Q ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHCCC--CCEEEEEECCHHHH
Q ss_conf 99959971789999998899999987249--98399994398889
Q 005532 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFL 319 (692)
Q Consensus 277 ~p~iLLLDEPts~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l 319 (692)
...++++||.-. |.......+...+... ...+|+++++.+.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 724999424333-45431112210022135664300010211100
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.42 E-value=0.053 Score=27.29 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++++|..|+|||||++.+.+.
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.054 Score=27.27 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
||.++|..|+|||||++-+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990989999999849
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.40 E-value=0.051 Score=27.39 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=19.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.|+|..|+|||||++-+.+-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.40 E-value=0.066 Score=26.68 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=66.9
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC-CCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHH-HCCCCHHHH
Q ss_conf 994797899992899948999999916-989971389987753200022132011069884499999997-110449999
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDI 523 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~g-~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~-~~~~~~~~~ 523 (692)
-|++|+.+-|.|++|+|||+|..-++. ........+ .|+... .+........ ...+.....
T Consensus 22 Gi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~---------~~~s~e--------~~~~~~~~~~~~~~~~~~~~ 84 (242)
T d1tf7a1 22 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPG---------VFVTFE--------ETPQDIIKNARSFGWDLAKL 84 (242)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCE---------EEEESS--------SCHHHHHHHHGGGTCCHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCC---------CCCCCC--------CCHHHHHHHHHHCCCCHHHH
T ss_conf 9969839999947999999999999999998568874---------201266--------79999999999849984898
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCHHHHH-HHH-HHHHHC-CCCCEEEEECCCCCCCHHH-----HHHH---HHHHHHCCCE
Q ss_conf 999844699932001367989978999-999-999863-6996799847889999887-----9999---9999742956
Q 005532 524 KGLLGRCNFKADMLDRKVSLLSGGEKA-RLA-FCKFMV-KPSTLLVLDEPTNHLDIPS-----KEML---EEAISEYKGT 592 (692)
Q Consensus 524 ~~~L~~~~l~~~~~~~~~~~LSgGqkq-rl~-LArall-~~p~iLlLDEPTn~LD~~s-----~~~l---~~~L~~~~~t 592 (692)
....................++..... .+. +..++- .+|+++++|--+...+... ...+ ...++++..+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (242)
T d1tf7a1 85 VDEGKLFILDASPDPEGQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGAT 164 (242)
T ss_dssp HHTTSEEEEECCCCSSCCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred HHHCCHHHHHHCCCHHHHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 87143024442103354444302458999999999988631222002078899876057267899999999999863971
Q ss_pred EEEEECCHH---------HHHHHCCEEEEEE
Q ss_conf 999916988---------8984366899997
Q 005532 593 VITVSHDRY---------FVKQIVNRVVEVK 614 (692)
Q Consensus 593 vI~VSHd~~---------~i~~~~d~i~~l~ 614 (692)
+++++|... ....++|.++.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 165 TVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp EEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred EEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf 6884210255422246762335362999988
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.40 E-value=0.044 Score=27.80 Aligned_cols=50 Identities=14% Similarity=0.209 Sum_probs=28.7
Q ss_pred CCEEEECCCCCCCCHHHHHHHHHHHCCC--CCEEEEEECCHHHHHH-HCCEEEE
Q ss_conf 9959971789999998899999987249--9839999439888984-4485899
Q 005532 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQ-LCTKIVE 328 (692)
Q Consensus 278 p~iLLLDEPts~LD~~~~~~l~~~L~~~--~~tvIivsHd~~~l~~-~~~~i~~ 328 (692)
..++++||.- .+.......|...+... ..-++++++....+.. +-.++..
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~ 152 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTR 152 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred EEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 1899996632-0002378999988631120023201267087759999988754
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.37 E-value=0.025 Score=29.39 Aligned_cols=43 Identities=21% Similarity=0.311 Sum_probs=30.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCCCCEEEEECCCC
Q ss_conf 9977969999968984189999999779999961799877875699982567
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~p~~G~v~~~~~~~~i~yv~Q~~ 170 (692)
-++.|.++.+.|++|+|||||+-.++...... +..+.|+.-+-
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~---------g~~~vyIDtE~ 98 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAA---------GGVAAFIDAEH 98 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHT---------TCEEEEEESSC
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC---------CCEEEEEECCC
T ss_conf 86663369996488748899999999987548---------98899998976
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.36 E-value=0.043 Score=27.92 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=17.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++|+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 7999969985499999999823
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.11 Score=25.33 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|||+.|+|||||++-+.+.
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.061 Score=26.92 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.35 E-value=0.048 Score=27.57 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
+|+|.||-||||||+-+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 899779998898999999999969
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.35 E-value=0.055 Score=27.20 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
||.|+|..|+|||||+.-+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998993889999999719
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.32 E-value=0.034 Score=28.59 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=22.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99779699999689841899999997799
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
..++| +.|.||.|||||+|.+.++...
T Consensus 36 ~~~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 36 KPPRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCE--EEEECCCCCCCHHHHHHHHHHH
T ss_conf 98864--6876699888308999999874
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.32 E-value=0.033 Score=28.60 Aligned_cols=24 Identities=29% Similarity=0.638 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
-|-++||+|||||-|.+.|++.+.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 479989999889999999998738
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.31 E-value=0.048 Score=27.56 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
++.|+|+-||||||..+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998799999899999999986
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.049 Score=27.54 Aligned_cols=24 Identities=33% Similarity=0.428 Sum_probs=21.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789999289994899999991698
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
..|+|+|+-++||||||+.|+|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 999988999997999999980998
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.28 E-value=0.045 Score=27.75 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999289994899999991698
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+-|.||.|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998999998499999999997
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.058 Score=27.03 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.|+|..|+|||||++-+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999729
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.059 Score=27.02 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=17.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|+|+.|+|||||++.+.+.
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=92.23 E-value=0.035 Score=28.45 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=23.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 479789999289994899999991698
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
..+.+|.|+|+-||||||+.+.|+..+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 678289998999998799999999986
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.20 E-value=0.066 Score=26.68 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
|+.|+|..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999398999999982
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.17 E-value=0.066 Score=26.68 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+++++|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=92.17 E-value=0.052 Score=27.34 Aligned_cols=25 Identities=32% Similarity=0.659 Sum_probs=21.5
Q ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 7969999968984189999999779
Q 005532 122 KGEKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
+.-++||.|+-|+|||||+..|...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 8159861179988899999999998
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.15 E-value=0.045 Score=27.74 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=14.5
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999799698999999973
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.09 E-value=0.069 Score=26.56 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
++++||.-.+|||||++.|+|.--
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~~ 51 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 699976898979999999968986
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.08 E-value=0.048 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++|+|..|+|||||++-+.+.
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.04 E-value=0.049 Score=27.52 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=19.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.++|..|+|||||++-+.+-
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 8999998990889999999719
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.02 E-value=0.077 Score=26.26 Aligned_cols=146 Identities=9% Similarity=0.065 Sum_probs=69.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHH-HCCCCHHHHHH
Q ss_conf 94797899992899948999999916989971389987753200022132011069884499999997-11044999999
Q 005532 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AEDWRIDDIKG 525 (692)
Q Consensus 447 i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~-~~~~~~~~~~~ 525 (692)
+++|..+-|.|+.|+|||+|..-++-...-..+ ...|+..+ .+........ ...+.....
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~~~~~~~---------~~~~is~e--------~~~~~~~~~~~~~~~~~~~~-- 83 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVENACANKE---------RAILFAYE--------ESRAQLLRNAYSWGMDFEEM-- 83 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTC---------CEEEEESS--------SCHHHHHHHHHTTSCCHHHH--
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC---------CCCEEECC--------CCHHHHHHHHHHCCCCHHHH--
T ss_conf 869849999918999999999999999987232---------44112126--------79999999999829986998--
Q ss_pred HHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH-------HHHHHHHCCCEEEEEEC
Q ss_conf 98446999320013679899789999999998636996799847889999887999-------99999742956999916
Q 005532 526 LLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEM-------LEEAISEYKGTVITVSH 598 (692)
Q Consensus 526 ~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~-------l~~~L~~~~~tvI~VSH 598 (692)
...+.. ...+.........+.........--.++++++.|--+.-+...+... +...+++++.++++++|
T Consensus 84 --~~~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~ 160 (242)
T d1tf7a2 84 --ERQNLL-KIVCAYPESAGLEDHLQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNT 160 (242)
T ss_dssp --HHTTSE-EECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred --HHCCCE-EEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf --545861-79973000101799999999999840885332204314304899999999999999999986983999985
Q ss_pred CHH----------HHHHHCCEEEEEE
Q ss_conf 988----------8984366899997
Q 005532 599 DRY----------FVKQIVNRVVEVK 614 (692)
Q Consensus 599 d~~----------~i~~~~d~i~~l~ 614 (692)
-.. .+..++|-++.+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 161 SDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp CSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred EEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf 67512554457764046421699999
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=92.01 E-value=0.047 Score=27.66 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=17.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.++|+.|+|||||++.+.+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
T ss_conf 99999999987899999984488
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.96 E-value=0.059 Score=26.98 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
||.|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 899999899499999999973
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=91.96 E-value=0.032 Score=28.76 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=20.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 978999928999489999999169
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
.-++.++|..|+|||||++-+.+.
T Consensus 17 ~~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 17 ELRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHCC
T ss_conf 689999999999889999887338
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.93 E-value=0.064 Score=26.77 Aligned_cols=22 Identities=41% Similarity=0.480 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
++.|+|..|+|||||++-+.+-
T Consensus 8 KivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990989999999619
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.92 E-value=0.059 Score=27.02 Aligned_cols=31 Identities=23% Similarity=0.210 Sum_probs=26.2
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 9947978999928999489999999169899
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
..++|..+.|.|+=|+|||||.+-++.-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 5799829999668776588999998764223
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.92 E-value=0.071 Score=26.48 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHH-CCCC
Q ss_conf 99999689841899999997-7999
Q 005532 125 KVGLVGVNGAGKTTQLRIIA-GQEE 148 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~-G~~~ 148 (692)
.++|+|..|+|||||++-+. +..+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~~~~ 28 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAGRFP 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCC
T ss_conf 9999999992989999999739998
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.87 E-value=0.053 Score=27.32 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
||.++|..|+|||||++-+..-
T Consensus 8 KI~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999849
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.87 E-value=0.053 Score=27.31 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++++|..|+|||||++-+.+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.81 E-value=0.071 Score=26.47 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|.++|..|+|||||++-+..-
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999992989999999739
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.78 E-value=0.061 Score=26.89 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
+|||.|.-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999979999889999999998
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=91.76 E-value=0.046 Score=27.68 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=25.2
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 94797899992899948999999916989
Q 005532 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 447 i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
++.+..+.++||-|+|||++.+.|++.+.
T Consensus 151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 151 IPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99767699989999888999999999859
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=0.081 Score=26.10 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.++|..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999991989999999729
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.057 Score=27.11 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
+++++|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999099999999970
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.56 E-value=0.067 Score=26.64 Aligned_cols=23 Identities=26% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|.|+-||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89998899999799999999998
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.55 E-value=0.068 Score=26.60 Aligned_cols=35 Identities=31% Similarity=0.409 Sum_probs=27.9
Q ss_pred ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 003512499977969999968984189999999779
Q 005532 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 111 ~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
++++. =+.+.+|++.+|+|+.|+|||||+..|+-.
T Consensus 57 raID~-l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 57 KVVDL-LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHHHH-HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEEEE-ECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 20310-256367887776679998989999999998
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.55 E-value=0.075 Score=26.34 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.+++||..|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.54 E-value=0.038 Score=28.27 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 8999928999489999999169899
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
++.++|+.|+|||||++-+.+-..+
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 9999999998789999998448888
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.50 E-value=0.041 Score=28.06 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=16.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.++++|..|+|||||++.+.+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.47 E-value=0.067 Score=26.65 Aligned_cols=29 Identities=28% Similarity=0.389 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf 99999689841899999997799999617
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~~G~ 153 (692)
.+.++|..|+|||||++-+.....|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCE
T ss_conf 99999999988899999884089797247
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.46 E-value=0.1 Score=25.41 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=11.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
+|.|=|.-|+||||+++.|+..+.
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~ 31 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAAS 31 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 999988866789999999999865
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.43 E-value=0.12 Score=25.10 Aligned_cols=21 Identities=48% Similarity=0.514 Sum_probs=15.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.40 E-value=0.09 Score=25.80 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|.++|..|+|||||+.-+..-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994989999999859
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.058 Score=27.06 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
||.|+|..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999997996989999999739
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.35 E-value=0.089 Score=25.85 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9947978999928999489999999169
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
-+++|+.+-|.|+.|+|||+|..-++-.
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHH
T ss_conf 8628859999917999989999999999
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.34 E-value=0.074 Score=26.34 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+||||.--+|||||+++|.|--
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred CEEEECCCCCCHHHHHHHHHCCC
T ss_conf 17688999998999999997889
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.34 E-value=0.065 Score=26.71 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.|+|..|+|||||++-+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999997999999999749
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.30 E-value=0.072 Score=26.43 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=15.4
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.28 E-value=0.066 Score=26.67 Aligned_cols=34 Identities=21% Similarity=0.407 Sum_probs=27.9
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCC
Q ss_conf 10010289947978999928999489999999169
Q 005532 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 439 ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+++ .-+.+-.|+|++|+|..|+|||+|+.-++..
T Consensus 58 aID-~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 58 VVD-LLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHH-HHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred EEE-EECCCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 031-0256367887776679998989999999998
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.27 E-value=0.075 Score=26.33 Aligned_cols=23 Identities=30% Similarity=0.444 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|+|+-||||||+.+.|+..+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998999999899999999996
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=91.25 E-value=0.076 Score=26.31 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 789999289994899999991698
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
=++.|+|+-||||||+.+.|+..+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 169998899998799999999997
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.068 Score=26.59 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=17.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
.+++||..|+|||||++-+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=91.17 E-value=0.072 Score=26.45 Aligned_cols=26 Identities=27% Similarity=0.235 Sum_probs=22.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 99999689841899999997799999
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~~p~ 150 (692)
++.|=|+-|+||||+++.|.-.+...
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998887788999999999987346
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.17 E-value=0.077 Score=26.26 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=15.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.08 E-value=0.08 Score=26.15 Aligned_cols=29 Identities=24% Similarity=0.334 Sum_probs=23.0
Q ss_pred CEEEEECCCCCCHHHHHHHHH-CCCCCCEE
Q ss_conf 789999289994899999991-69899713
Q 005532 451 EKTAIIGPNGCGKSTLLKLIM-GLEKPRGG 479 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~-g~~~p~~G 479 (692)
-|+-|+|..|+|||||++-+. +...|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf 779999899998899999895098278888
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.071 Score=26.47 Aligned_cols=22 Identities=41% Similarity=0.552 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
|+.++|..|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999739
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.06 E-value=0.099 Score=25.54 Aligned_cols=26 Identities=31% Similarity=0.450 Sum_probs=22.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 99479789999289994899999991
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIM 471 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~ 471 (692)
-+++|..+-|.|+.|+|||||..-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 95588799998589898899999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=91.02 E-value=0.077 Score=26.24 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
-++++|..++|||||+..|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.00 E-value=0.073 Score=26.38 Aligned_cols=21 Identities=19% Similarity=0.463 Sum_probs=13.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899789999999971
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.074 Score=26.37 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.6
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
|+.++|..|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999299999999971
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.075 Score=26.32 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
++.++|..|+|||||++-+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999998997899999999719
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.91 E-value=0.088 Score=25.88 Aligned_cols=30 Identities=30% Similarity=0.447 Sum_probs=24.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEE
Q ss_conf 899992899948999999916989971389
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i 481 (692)
++.++|..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 999999999888999998840897972479
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=90.91 E-value=0.085 Score=25.99 Aligned_cols=24 Identities=38% Similarity=0.555 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
=.+||||.--+|||||+++|.+--
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 379997899998999999997789
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.90 E-value=0.15 Score=24.33 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=23.7
Q ss_pred CCCEEEEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 001028994797899992899948999999916
Q 005532 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 440 l~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g 472 (692)
+....+.+ .|.-+.|+|++|+||||+...|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 78999999-999999981899998999999998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.87 E-value=0.076 Score=26.29 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=15.7
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.+.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.86 E-value=0.074 Score=26.37 Aligned_cols=42 Identities=10% Similarity=0.147 Sum_probs=25.9
Q ss_pred HHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 99813999599717899999988999999872499839999439
Q 005532 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (692)
Q Consensus 272 raL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~~~tvIivsHd 315 (692)
..-..+.-|++.| ...|+-+.+.+.+... .+.+...+++-..
T Consensus 87 al~~~D~avlvvd-a~~Gv~~~t~~~~~~~-~~~~~p~~i~iNk 128 (267)
T d2dy1a2 87 ALEAADAALVAVS-AEAGVQVGTERAWTVA-ERLGLPRMVVVTK 128 (267)
T ss_dssp HHHHCSEEEEEEE-TTTCSCHHHHHHHHHH-HHTTCCEEEEEEC
T ss_pred HHCCCCCEEEEEE-CCCCCCCHHHHHHHHH-HHCCCCCCCCCCC
T ss_conf 3124673389842-3577421157887765-5404431013332
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.85 E-value=0.071 Score=26.50 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
||.++|..|+|||||++-+.+-
T Consensus 7 KI~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990999999999709
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.076 Score=26.27 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=17.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++|+|..|+|||||++-+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999699999999971
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.79 E-value=0.082 Score=26.07 Aligned_cols=27 Identities=26% Similarity=0.199 Sum_probs=23.8
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 994797899992899948999999916
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~g 472 (692)
-|++|..+-|.|+.|+|||+|..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 976897999988998878899999999
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.77 E-value=0.08 Score=26.15 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=17.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
+++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.64 E-value=0.093 Score=25.73 Aligned_cols=28 Identities=32% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCCC
Q ss_conf 999996898418999999977--9999961
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG--QEEPDSG 152 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G--~~~p~~G 152 (692)
.+.|+|..|+|||||++-+.- ...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.63 E-value=0.15 Score=24.28 Aligned_cols=32 Identities=25% Similarity=0.204 Sum_probs=21.1
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 035124999779699999689841899999997
Q 005532 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 112 iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~ 144 (692)
.++..-+ .-.|.-+.+.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v-~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLV-DVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEE-EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEE-EECCEEEEEEECCCCCHHHHHHHHH
T ss_conf 4889999-9999999998089999999999999
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.63 E-value=0.11 Score=25.32 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=18.2
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
|+.++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999598999999972
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.62 E-value=0.092 Score=25.76 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.3
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC
Q ss_conf 78999928999489999999169899
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~~p 476 (692)
..|+|-|.-||||||+++.|...+..
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 19999899888599999999998730
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=90.59 E-value=0.14 Score=24.64 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=25.3
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 899479789999289994899999991698
Q 005532 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 445 l~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
=-|+.|..+-|.|+.|+|||||...++...
T Consensus 49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~ 78 (263)
T d1u94a1 49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 78 (263)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 996673589980577747899999999998
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.58 E-value=0.085 Score=25.98 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
++.++|..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899598999999970
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.086 Score=25.92 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|.+||..|+|||||++-+..-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999998998999999999709
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.50 E-value=0.097 Score=25.61 Aligned_cols=28 Identities=36% Similarity=0.509 Sum_probs=22.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC--CCCCCEE
Q ss_conf 899992899948999999916--9899713
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG--LEKPRGG 479 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g--~~~p~~G 479 (692)
|+.|+|..|+|||||++-+.- ...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCEEE
T ss_conf 999998999998999998846898887241
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.048 Score=27.56 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
++.++|..|+|||||++-+..-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999990889999999849
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.47 E-value=0.093 Score=25.73 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
|+.|+|..|+|||||++-+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999899999999964
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.43 E-value=0.099 Score=25.55 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=31.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHH---HCCCEEEEEECCHHHH
Q ss_conf 9899789999999998636996799847889999887999999997---4295699991698889
Q 005532 542 SLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAIS---EYKGTVITVSHDRYFV 603 (692)
Q Consensus 542 ~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~---~~~~tvI~VSHd~~~i 603 (692)
..++.-+..++.-.......|-+.+.-. .|....+.+.++.+ .....++.++...+.-
T Consensus 196 ~~~~~~e~~~~~~~~~~~~kP~~~v~Nk----~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~ 256 (319)
T d1wxqa1 196 TKWSQDDLLAFASEIRRVNKPMVIAANK----ADAASDEQIKRLVREEEKRGYIVIPTSAAAELT 256 (319)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCEEEEEEC----GGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHCCCHHHHCCC----CCCHHHHHHHHHHHHHHHCCCEEEEECHHHHHH
T ss_conf 4458889998688744423743432254----431024799999998750699899935888999
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=90.41 E-value=0.085 Score=25.97 Aligned_cols=38 Identities=13% Similarity=0.230 Sum_probs=24.1
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 8139995997178999999889999998724998399994
Q 005532 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIIS 313 (692)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~~~tvIivs 313 (692)
-..+.-|++.| +..|+-+.++.... .+++.+..+|++-
T Consensus 93 ~~~D~avlVvd-a~~Gv~~~T~~~w~-~a~~~~lP~i~fI 130 (276)
T d2bv3a2 93 RVLDGAIVVFD-SSQGVEPQSETVWR-QAEKYKVPRIAFA 130 (276)
T ss_dssp HHCCEEEEEEE-TTTSSCHHHHHHHH-HHHTTTCCEEEEE
T ss_pred HHHHHEEEECC-CCCCCCHHHHHHHH-HHHHCCCCEEEEE
T ss_conf 96300577322-56774466999999-9998599979998
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.39 E-value=0.091 Score=25.78 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
|+.|+|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999899588999999972
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.33 E-value=0.055 Score=27.18 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=14.0
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999999999499999999970
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.28 E-value=0.12 Score=25.01 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=18.7
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|.++|..|+|||||+.-+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999996999999999719
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.21 E-value=0.078 Score=26.20 Aligned_cols=42 Identities=12% Similarity=0.275 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHHHH
Q ss_conf 9967998478899998879999999974295--699991698889
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFV 603 (692)
Q Consensus 561 ~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~--tvI~VSHd~~~i 603 (692)
+..++++||.- ++.......|...+..... .+++++++..-+
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CEEEEEEECCC-CCCHHHHHHHHHHCCCCCCCEEEEECCCCHHHH
T ss_conf 35999982443-232157787752011233333665314743021
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.17 E-value=0.06 Score=26.96 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=19.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
+|.++|..|+|||||++-+.+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHHC
T ss_conf 9999999994999999999709
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.99 E-value=0.088 Score=25.88 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.6
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
-++.|=|+-|+||||+++.|....
T Consensus 5 lrI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 5 LRVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 299998986778999999999981
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=89.98 E-value=0.11 Score=25.30 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.4
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9789999289994899999991698997
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~p~ 477 (692)
...+-|.|+-|+||||+++.++..+...
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf 8816888989998999999999997544
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=89.94 E-value=0.093 Score=25.71 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=8.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999289994899999991698
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
|.|-|.-|+||||+++.|...+
T Consensus 8 I~IEG~iGsGKSTl~~~L~~~l 29 (331)
T d1osna_ 8 IYLDGAYGIGKTTAAEEFLHHF 29 (331)
T ss_dssp EEEEESSSSCTTHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 9998887788999999999987
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.93 E-value=0.084 Score=26.01 Aligned_cols=43 Identities=14% Similarity=0.280 Sum_probs=33.0
Q ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHHHH
Q ss_conf 69967998478899998879999999974295--699991698889
Q 005532 560 KPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFV 603 (692)
Q Consensus 560 ~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~--tvI~VSHd~~~i 603 (692)
.+..++++||.-. |.......+...+.++.. .+|+++++.+.+
T Consensus 130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 130 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CCCEEEEECCCCC-CCCCCCHHHHCCCCCCCCCCCCEEEECCCCCH
T ss_conf 8724999424333-45431112210022135664300010211100
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.92 E-value=0.094 Score=25.69 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
-+-|.||.|+|||++.+.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCC
T ss_conf 79988969998899999986201
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=89.91 E-value=0.11 Score=25.23 Aligned_cols=34 Identities=32% Similarity=0.435 Sum_probs=26.8
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC------------CCCEEEEEEC
Q ss_conf 789999289994899999991698------------9971389987
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGLE------------KPRGGEVLLG 484 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~~------------~p~~G~i~~~ 484 (692)
=++||||--.+|||||++.|++.- +|.-|.+.+.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~ 56 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVP 56 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEECC
T ss_conf 3799978999989999999977898774789966703876899606
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.91 E-value=0.24 Score=23.04 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.2
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
=.+||||---+|||||+++|++--
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 348888999998899999997799
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.86 E-value=0.094 Score=25.67 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99992899948999999916989
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
+-+.||-|+||||+.+++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHC
T ss_conf 89889799878889999999849
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=89.85 E-value=0.089 Score=25.84 Aligned_cols=22 Identities=50% Similarity=0.534 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
++.|.|.=|||||||++-++..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.85 E-value=0.2 Score=23.61 Aligned_cols=26 Identities=27% Similarity=0.231 Sum_probs=20.6
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 94797899992899948999999916
Q 005532 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 447 i~~Ge~v~ivG~NGsGKSTLl~lL~g 472 (692)
.-.|.-+.|+|++|+||||+...+..
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 99999999980899998999999998
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=89.83 E-value=0.13 Score=24.75 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.4
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.++||.|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHC
T ss_conf 89997787500699999998633
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.79 E-value=0.086 Score=25.94 Aligned_cols=115 Identities=17% Similarity=0.260 Sum_probs=60.8
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 47978999928999489999999169899713899877532000221320110698844999999971104499999998
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLL 527 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~~~L 527 (692)
.+..-+-|.||.|+|||+|.+.+++...- + ++.-..... .
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~----------~----~~~~~~~~l--------------------------~ 78 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQA----------N----FISIKGPEL--------------------------L 78 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTTC----------E----EEEECHHHH--------------------------H
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHCC----------C----EEEEEHHHH--------------------------H
T ss_conf 98875788789987630477887877189----------4----799887995--------------------------2
Q ss_pred HHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCC----------HHHHHHHHHHHHHC-------C
Q ss_conf 446999320013679899789999999998636996799847889999----------88799999999742-------9
Q 005532 528 GRCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLD----------IPSKEMLEEAISEY-------K 590 (692)
Q Consensus 528 ~~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD----------~~s~~~l~~~L~~~-------~ 590 (692)
. ..+ -...++-+-++..|-...|-||++||--.-+. ......+..++... +
T Consensus 79 ~----------~~~--~~~~~~l~~~f~~A~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 146 (265)
T d1r7ra3 79 T----------MWF--GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 146 (265)
T ss_dssp T----------SCT--TTHHHHHHHHHHHHHHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------C
T ss_pred H----------CCC--CCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 5----------316--5158999999999986398435687546324557876788737999999999999628677799
Q ss_pred CEEEEEECCHHHHHHH------CCEEEEEE
Q ss_conf 5699991698889843------66899997
Q 005532 591 GTVITVSHDRYFVKQI------VNRVVEVK 614 (692)
Q Consensus 591 ~tvI~VSHd~~~i~~~------~d~i~~l~ 614 (692)
.-+|..|++.+.++.. +++++.+.
T Consensus 147 v~vi~ttn~~~~ld~al~r~gRf~~~i~~~ 176 (265)
T d1r7ra3 147 VFIIGATNRPDIIDPAILRPGRLDQLIYIP 176 (265)
T ss_dssp CEEEECCBSCTTTSCGGGSSTTSEEEEECC
T ss_pred EEEEEECCCCHHCCHHHHCCCCCCEEEEEC
T ss_conf 899991799222799780787764799956
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=89.73 E-value=0.091 Score=25.79 Aligned_cols=45 Identities=11% Similarity=-0.047 Sum_probs=26.6
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Q ss_conf 996799847889999887999999997429569999169888984
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKGTVITVSHDRYFVKQ 605 (692)
Q Consensus 561 ~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~tvI~VSHd~~~i~~ 605 (692)
.|-++++||.-+....+....+....+.++..+++++.+..-+..
T Consensus 276 ~~v~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~ 320 (433)
T d1e9ra_ 276 RRLWLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDD 320 (433)
T ss_dssp CCEEEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHH
T ss_pred CCEEEEECHHHHHCCCHHHHHHHHHHCCCCCEEEEEECCHHHHHH
T ss_conf 854998353755256087999999847899159999364889999
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.72 E-value=0.088 Score=25.86 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=29.4
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHH
Q ss_conf 9967998478899998879999999974295--6999916988898
Q 005532 561 PSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVK 604 (692)
Q Consensus 561 ~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~--tvI~VSHd~~~i~ 604 (692)
+..++++||.- .+.......|...|.++.. -++++++....+.
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CEEEEEEECCC-CCHHHHHHHHHHHHHHCCCCEEECCCCCCHHHHH
T ss_conf 71899996632-0002378999988631120023201267087759
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.65 E-value=0.066 Score=26.67 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=19.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.++||-|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=89.41 E-value=0.11 Score=25.26 Aligned_cols=23 Identities=39% Similarity=0.676 Sum_probs=12.8
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+|.|-|.-|+||||+++.|+..+
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99998986778999999999981
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.39 E-value=0.11 Score=25.25 Aligned_cols=22 Identities=36% Similarity=0.401 Sum_probs=18.9
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
-++++|..++|||||+..|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHH
T ss_conf 8999958898099999999999
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=89.31 E-value=0.091 Score=25.77 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=27.5
Q ss_pred ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 0035124999779699999689841899999997799
Q 005532 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 111 ~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++++.+ +.|-+|++.+|+|+.|+|||+|+..+.-..
T Consensus 56 ~~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~ 91 (276)
T d1fx0a3 56 IAIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILNQ 91 (276)
T ss_dssp TTTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred EEEECC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 677501-454677667600677888579999977654
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.10 E-value=0.19 Score=23.70 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=25.3
Q ss_pred CEEEEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 035124999779699999689841899999997799
Q 005532 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 112 iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++.-+-...++| .+.++||-|+|||.|.+.|++++
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 898861436886-38887799850889999999986
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.91 E-value=0.14 Score=24.47 Aligned_cols=41 Identities=20% Similarity=0.095 Sum_probs=26.4
Q ss_pred CCCCCEEEECCCCCCC-CHHHHHHHHHHH---CCCCCEEEEEECC
Q ss_conf 1399959971789999-998899999987---2499839999439
Q 005532 275 LQDPDLLLLDEPTNHL-DLDTIEWLEGYL---GKQDVPMVIISHD 315 (692)
Q Consensus 275 ~~~p~iLLLDEPts~L-D~~~~~~l~~~L---~~~~~tvIivsHd 315 (692)
+...++|++|+--.-. +......|..++ ...++.+|+++..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCC
T ss_conf 762130101126550586577889999999876316638995487
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=88.87 E-value=0.2 Score=23.59 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.||++|.-.+|||||+..|.|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHH
T ss_conf 99999345884999999997034
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=88.82 E-value=0.16 Score=24.12 Aligned_cols=47 Identities=11% Similarity=-0.001 Sum_probs=28.6
Q ss_pred HHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCC-CEEEEEECCHH
Q ss_conf 99999813999599717899999988999999872499-83999943988
Q 005532 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD-VPMVIISHDRA 317 (692)
Q Consensus 269 aLAraL~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~~-~tvIivsHd~~ 317 (692)
.++.+-..+.-+|++| ...|+-+++.+.+. ++...| +.+|++-..++
T Consensus 106 ~~~g~~~aD~ailVvd-a~~G~~~Qt~e~~~-~~~~~gv~~iiv~vNK~D 153 (222)
T d1zunb3 106 MATGASTCDLAIILVD-ARYGVQTQTRRHSY-IASLLGIKHIVVAINKMD 153 (222)
T ss_dssp HHHHHTTCSEEEEEEE-TTTCSCHHHHHHHH-HHHHTTCCEEEEEEECTT
T ss_pred HCCCCCCCCEEEEEEC-CCCCCCCCHHHHHH-HHHHCCCCEEEEEEECCC
T ss_conf 2146655766898720-45676633389999-999839987999987001
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.77 E-value=0.26 Score=22.83 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=21.1
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHC
Q ss_conf 8994797899992899948999999916
Q 005532 445 LTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 445 l~i~~Ge~v~ivG~NGsGKSTLl~lL~g 472 (692)
+-.-.|.-+.|+|++|+||||+...+..
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCEEEEEEECCCCCHHHHHHHHHH
T ss_conf 9999999999980899999999999998
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=88.54 E-value=0.14 Score=24.49 Aligned_cols=20 Identities=20% Similarity=0.283 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689841899999997
Q 005532 125 KVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~ 144 (692)
-++++|..++|||||+..|+
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 89999447999999999999
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.31 E-value=0.16 Score=24.24 Aligned_cols=33 Identities=33% Similarity=0.446 Sum_probs=26.0
Q ss_pred CEEEEECCCCCCHHHHHHHHHCC-----------CCCCEEEEEE
Q ss_conf 78999928999489999999169-----------8997138998
Q 005532 451 EKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLL 483 (692)
Q Consensus 451 e~v~ivG~NGsGKSTLl~lL~g~-----------~~p~~G~i~~ 483 (692)
=++||||--.+|||||++.|++. ++|.-|.+.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v 46 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPM 46 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf 34888899999889999999779974136998887784589964
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.00 E-value=0.18 Score=23.84 Aligned_cols=119 Identities=18% Similarity=0.192 Sum_probs=62.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCC---CHHHCCCCCCHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 899992899948999999916989971389987753200022132---01106988449999999711044999999984
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---QAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~---~~~~l~~~~t~~~~~~~~~~~~~~~~~~~~L~ 528 (692)
-+-|.|++|+||||+.++++..+....+. .. .+.+...+ .......+.... ........+.++..+.
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~---~~---~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~i~~ir~~~~ 105 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKGLNCETGI---TA---TPCGVCDNCREIEQGRFVDLIEI----DAASRTKVEDTRDLLD 105 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHCTTCS---CS---SCCSCSHHHHHHHHTCCTTEEEE----ETTCSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCCC---CC---CCCCCCHHHHHHHCCCCCEEEEE----CCHHCCCHHHHHHHHH
T ss_conf 59888899875899999999984685566---66---75554247999974798707996----1120078999999999
Q ss_pred HCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC--EEEEEECCHHHHH
Q ss_conf 469993200136798997899999999986369967998478899998879999999974295--6999916988898
Q 005532 529 RCNFKADMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAISEYKG--TVITVSHDRYFVK 604 (692)
Q Consensus 529 ~~~l~~~~~~~~~~~LSgGqkqrl~LArall~~p~iLlLDEPTn~LD~~s~~~l~~~L~~~~~--tvI~VSHd~~~i~ 604 (692)
.+... + . -.+..++|+||.-. |...+...|...+.++.. .+|+++++..-+.
T Consensus 106 ~~~~~------~---~--------------~~~~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~ 159 (239)
T d1njfa_ 106 NVQYA------P---A--------------RGRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 159 (239)
T ss_dssp SCCCS------C---S--------------SSSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred HHHHC------C---C--------------CCCCEEEEEECCCC-CCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCC
T ss_conf 99746------5---2--------------59987999978110-899999999999856898869999738856367
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=87.96 E-value=0.15 Score=24.30 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999289994899999991698
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+-+.||-|+|||+|.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHC
T ss_conf 8876689888359999999873
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.92 E-value=0.17 Score=23.99 Aligned_cols=20 Identities=35% Similarity=0.433 Sum_probs=18.1
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689841899999997
Q 005532 125 KVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~ 144 (692)
-++|+|..|+|||||+..|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 99999589899899999999
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.82 E-value=0.11 Score=25.12 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=28.3
Q ss_pred ECCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 01001028994797899992899948999999916989
Q 005532 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 438 ~ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+++.+ +.|-.|++++|+|+.|+|||+|+..+.....
T Consensus 56 ~~ID~l-~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 56 IAIDAM-IPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TTTTTT-SCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred EEEECC-CCCCCCCEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 677501-4546776676006778885799999776540
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.78 E-value=0.16 Score=24.16 Aligned_cols=35 Identities=26% Similarity=0.248 Sum_probs=23.0
Q ss_pred CCEEEEECCCCCCHHHHHHHHH-CCCCCCCCEEEEC
Q ss_conf 9699999689841899999997-7999996179987
Q 005532 123 GEKVGLVGVNGAGKTTQLRIIA-GQEEPDSGNVIKA 157 (692)
Q Consensus 123 Ge~~~lvG~nGsGKSTLl~~L~-G~~~p~~G~v~~~ 157 (692)
-.++.|+|+.|||||++++.|. ..+....+-|.++
T Consensus 50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 265899907999689999999999984799889996
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.75 E-value=0.1 Score=25.46 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=24.3
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99479789999289994899999991698
Q 005532 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 446 ~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
-++.|..+-|.|++|+|||||...++...
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 86663369996488748899999999987
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.68 E-value=0.29 Score=22.52 Aligned_cols=125 Identities=25% Similarity=0.341 Sum_probs=65.6
Q ss_pred EEEECCCEEEEECCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCEEEEECCCCHHHCCCCCCHHHHHHHHHCCCCHHHHH
Q ss_conf 89947978999928999489999999169899713899877532000221320110698844999999971104499999
Q 005532 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIK 524 (692)
Q Consensus 445 l~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~~p~~G~i~~~~~~~~~~~~~q~~~~~l~~~~t~~~~~~~~~~~~~~~~~~ 524 (692)
=-|+.|..+-|.|+.|||||||...++....-..|.+ .|+.-+. .+++
T Consensus 52 GGip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v---------~yiDtE~--~~~~--------------------- 99 (268)
T d1xp8a1 52 GGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTC---------AFIDAEH--ALDP--------------------- 99 (268)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCE---------EEEESSC--CCCH---------------------
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEE---------EEEECCC--CCCH---------------------
T ss_conf 9866754789805876522799999999997079989---------9998876--5899---------------------
Q ss_pred HHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCC-------CHH------HHHHHHHHHH--
Q ss_conf 99844699932001367989978999999999863--699679984788999-------988------7999999997--
Q 005532 525 GLLGRCNFKADMLDRKVSLLSGGEKARLAFCKFMV--KPSTLLVLDEPTNHL-------DIP------SKEMLEEAIS-- 587 (692)
Q Consensus 525 ~~L~~~~l~~~~~~~~~~~LSgGqkqrl~LArall--~~p~iLlLDEPTn~L-------D~~------s~~~l~~~L~-- 587 (692)
..+..+|+..+.. .+..-.-+|++. .++..++ .+++++|+|=-++.. |.. ..+.+..+++
T Consensus 100 ~~a~~~Gvd~d~i--~~~~~~~~E~~~-~~~~~l~~~~~~~liIiDSi~al~~r~e~~~~~~~~~~~~~a~~l~~~lr~l 176 (268)
T d1xp8a1 100 VYARALGVNTDEL--LVSQPDNGEQAL-EIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKL 176 (268)
T ss_dssp HHHHHTTCCGGGC--EEECCSSHHHHH-HHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHE--EEECCCCHHHHH-HHHHHHHHCCCCCEEEEECCCCCCCHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999828981237--997489999999-9999998658971999945454553888716534105779999999999997
Q ss_pred -----HCCCEEEEEECCHHHHH
Q ss_conf -----42956999916988898
Q 005532 588 -----EYKGTVITVSHDRYFVK 604 (692)
Q Consensus 588 -----~~~~tvI~VSHd~~~i~ 604 (692)
.+...+|++.|=+.-+.
T Consensus 177 ~~~~~~~~~~vi~tNQv~~~~g 198 (268)
T d1xp8a1 177 TAILSKTGTAAIFINQVREKIG 198 (268)
T ss_dssp HHHHTTTCCEEEEEEEC-----
T ss_pred HHHHHHCCCEEEEEEEEEECCC
T ss_conf 7666432976999967860265
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.65 E-value=0.2 Score=23.53 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.0
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+.++||.|+|||.|.+.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHHCC
T ss_conf 899977875006999999986336
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.61 E-value=0.18 Score=23.78 Aligned_cols=22 Identities=23% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999289994899999991698
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+-|.||.|+|||++.+.++...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 6876699888308999999874
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=87.55 E-value=0.19 Score=23.73 Aligned_cols=21 Identities=43% Similarity=0.517 Sum_probs=18.3
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
-++|+|..|+|||||+..|+.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
T ss_conf 999994889809999999999
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.99 E-value=0.22 Score=23.26 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=21.7
Q ss_pred EECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9779699999689841899999997799
Q 005532 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 120 i~~Ge~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
++++. +.++||.|+|||-|.+.|+...
T Consensus 66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf 78753-2441899863789999998644
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.41 E-value=0.25 Score=22.88 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=16.1
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 999996898418999999977
Q 005532 125 KVGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G 145 (692)
.+.++|..|+|||||++-+..
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~ 24 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRI 24 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999999999988999999967
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.41 E-value=0.26 Score=22.82 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
++.++|..|+|||||++-+...
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999999889999999679
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=0.25 Score=22.92 Aligned_cols=20 Identities=10% Similarity=0.255 Sum_probs=9.7
Q ss_pred EEEECCCCCCHHHHHHHHHC
Q ss_conf 99996898418999999977
Q 005532 126 VGLVGVNGAGKTTQLRIIAG 145 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~G 145 (692)
+.+.||.|+||||+.+.++.
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~ 46 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSR 46 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
T ss_conf 98889998759999999998
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.64 E-value=0.15 Score=24.28 Aligned_cols=33 Identities=15% Similarity=0.210 Sum_probs=26.2
Q ss_pred ECEEEEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 0035124999779699999689841899999997
Q 005532 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 111 ~iL~~isl~i~~Ge~~~lvG~nGsGKSTLl~~L~ 144 (692)
++++- -+.+-+|++.+|+|+.|+|||+|+.-+.
T Consensus 57 raID~-l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 57 KAVDS-LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHHHH-HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred EEEEC-CCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 57743-4676678778765688888589999999
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.50 E-value=0.28 Score=22.60 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=15.4
Q ss_pred EEEECCCCCCHHHHHHHHHCCC
Q ss_conf 9999289994899999991698
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+-|.|+.|+|||-|+..++...
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
T ss_conf 7998889983999999999874
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=85.38 E-value=0.097 Score=25.61 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=24.3
Q ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCC
Q ss_conf 9789999289994899999991698997
Q 005532 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (692)
Q Consensus 450 Ge~v~ivG~NGsGKSTLl~lL~g~~~p~ 477 (692)
|..+-|+|+-|+|||||++.++++++|-
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~~ 55 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPEI 55 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHCCCC
T ss_conf 9708998899852999999998737982
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.35 E-value=0.22 Score=23.31 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=17.6
Q ss_pred EEEECCCCCCHHHHHHHHH
Q ss_conf 9999689841899999997
Q 005532 126 VGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 126 ~~lvG~nGsGKSTLl~~L~ 144 (692)
++++|..++|||||+..|+
T Consensus 27 i~iiGHVD~GKSTL~~~Ll 45 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNIL 45 (245)
T ss_dssp EEEEECGGGTHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHH
T ss_conf 9999527989999999999
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.24 E-value=0.3 Score=22.40 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.8
Q ss_pred EEEEECCCCCCHHHHHHHHHC
Q ss_conf 899992899948999999916
Q 005532 452 KTAIIGPNGCGKSTLLKLIMG 472 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g 472 (692)
.|+++|.-++|||||+..|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHH
T ss_conf 999994789849999999999
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.89 E-value=0.26 Score=22.80 Aligned_cols=44 Identities=18% Similarity=0.225 Sum_probs=30.6
Q ss_pred HCCCCCEEEECCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCHHHH
Q ss_conf 8139995997178999999889999998724998399994398889
Q 005532 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (692)
Q Consensus 274 L~~~p~iLLLDEPts~LD~~~~~~l~~~L~~~~~tvIivsHd~~~l 319 (692)
-+.+.-+++.| ...|+-++++..+...+.. +..+|++-..++-+
T Consensus 118 ~~~D~allVVd-a~eGv~~qT~~~~~~a~~~-~~p~i~viNKiDr~ 161 (341)
T d1n0ua2 118 RVTDGALVVVD-TIEGVCVQTETVLRQALGE-RIKPVVVINKVDRA 161 (341)
T ss_dssp HTCSEEEEEEE-TTTBSCHHHHHHHHHHHHT-TCEEEEEEECHHHH
T ss_pred HHCCCEEEEEE-CCCCCCHHHHHHHHHHHHC-CCCEEEEEECCCCC
T ss_conf 52372499986-5668204699999999876-99869998772655
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.82 E-value=0.45 Score=21.24 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 899992899948999999916989
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
.+||+|.-.+|||||+..|.+...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 899997248869999999970412
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.61 E-value=0.28 Score=22.56 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.2
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 99999689841899999997799
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.+.++||.|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99997888624899999999983
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=84.61 E-value=0.33 Score=22.13 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 99992899948999999916989
Q 005532 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (692)
Q Consensus 453 v~ivG~NGsGKSTLl~lL~g~~~ 475 (692)
+-++||+|+|||-|.+.|+....
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
T ss_conf 24418998637899999986443
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| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.55 E-value=0.31 Score=22.28 Aligned_cols=20 Identities=25% Similarity=0.346 Sum_probs=18.0
Q ss_pred EEEEECCCCCCHHHHHHHHH
Q ss_conf 99999689841899999997
Q 005532 125 KVGLVGVNGAGKTTQLRIIA 144 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~ 144 (692)
-++++|..++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHH
T ss_conf 79999478998999999999
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| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=84.15 E-value=0.27 Score=22.69 Aligned_cols=20 Identities=40% Similarity=0.642 Sum_probs=17.6
Q ss_pred ECCCEEEEECCCCCCHHHHH
Q ss_conf 77969999968984189999
Q 005532 121 KKGEKVGLVGVNGAGKTTQL 140 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl 140 (692)
+.|+...+.|.+|+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88988999704779856023
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| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.08 E-value=0.32 Score=22.19 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=26.6
Q ss_pred EEECCCEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf 997796999996898418999999977999
Q 005532 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (692)
Q Consensus 119 ~i~~Ge~~~lvG~nGsGKSTLl~~L~G~~~ 148 (692)
.++++..+.+.||-|+|||++.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 899767699989999888999999999859
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| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.94 E-value=0.38 Score=21.73 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=19.9
Q ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 699999689841899999997799
Q 005532 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (692)
Q Consensus 124 e~~~lvG~nGsGKSTLl~~L~G~~ 147 (692)
.-+.|||+.|+|||+++.-++..+
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEECCCCCCHHHHHHHHHHHH
T ss_conf 896798889886779999999999
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| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.80 E-value=0.21 Score=23.46 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.+.|+|+-|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 89967899989999999999998
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| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=83.37 E-value=0.28 Score=22.59 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=17.0
Q ss_pred CCCEEEEECCCCCCHHHHH
Q ss_conf 7969999968984189999
Q 005532 122 KGEKVGLVGVNGAGKTTQL 140 (692)
Q Consensus 122 ~Ge~~~lvG~nGsGKSTLl 140 (692)
.|+...+.|.+|+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEECCCCCCCCCCC
T ss_conf 9988999736879814221
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| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=83.21 E-value=0.61 Score=20.42 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.5
Q ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCEE
Q ss_conf 8999928999489999999169899713
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~~p~~G 479 (692)
++++||.--+|||||++.|.|......|
T Consensus 114 ~v~vvG~PNvGKSsliN~L~~~~~~~~~ 141 (273)
T d1puja_ 114 RALIIGIPNVGKSTLINRLAKKNIAKTG 141 (273)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred EEEEEECCCCCHHHHHHHHHCCCEEEEC
T ss_conf 7899866754435554254266158878
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| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=82.97 E-value=0.18 Score=23.82 Aligned_cols=32 Identities=25% Similarity=0.434 Sum_probs=26.2
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHH
Q ss_conf 100102899479789999289994899999991
Q 005532 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (692)
Q Consensus 439 ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~ 471 (692)
+++ .-+.+-.|+|++|+|+.|+|||+|+.-++
T Consensus 58 aID-~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 58 AVD-SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHH-HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred EEE-CCCCCCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 774-34676678778765688888589999999
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| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.86 E-value=0.33 Score=22.10 Aligned_cols=20 Identities=40% Similarity=0.645 Sum_probs=17.8
Q ss_pred ECCCEEEEECCCCCCHHHHH
Q ss_conf 77969999968984189999
Q 005532 121 KKGEKVGLVGVNGAGKTTQL 140 (692)
Q Consensus 121 ~~Ge~~~lvG~nGsGKSTLl 140 (692)
+.|+...+.|.+|+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCCCCCE
T ss_conf 88987999736778812051
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| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=82.76 E-value=0.35 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=20.4
Q ss_pred ECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 479789999289994899999991698
Q 005532 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 448 ~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
+.--.+-++|+-++|||+|+.+|...+
T Consensus 102 ~k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 102 GKRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 761799998589887789999999983
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| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=81.54 E-value=0.41 Score=21.51 Aligned_cols=35 Identities=14% Similarity=0.192 Sum_probs=25.1
Q ss_pred CCCCEEEEEECCCEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 100102899479789999289994899999991698
Q 005532 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 439 ll~~isl~i~~Ge~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
++.-+-.....| .+-++||-|+|||.|.+.|++..
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf 898861436886-38887799850889999999986
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| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.21 E-value=0.56 Score=20.64 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=17.6
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 9999968984189999999779
Q 005532 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (692)
Q Consensus 125 ~~~lvG~nGsGKSTLl~~L~G~ 146 (692)
-+.|||+.|.|||++..-++..
T Consensus 45 n~lLvG~pGVGKTalv~~LA~r 66 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
T ss_conf 7399835875447999999999
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| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.56 E-value=0.49 Score=21.01 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=20.3
Q ss_pred EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf 89999289994899999991698
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~~ 474 (692)
.+-++||+|+|||.+.+.|+..+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHHH
T ss_conf 99997888624899999999983
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| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.13 E-value=0.52 Score=20.85 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.1
Q ss_pred EEEEECCCCCCHHHHHHHHHCC
Q ss_conf 8999928999489999999169
Q 005532 452 KTAIIGPNGCGKSTLLKLIMGL 473 (692)
Q Consensus 452 ~v~ivG~NGsGKSTLl~lL~g~ 473 (692)
.+-|.|-=||||||||+-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEEECCCCCHHHHHHHHHHC
T ss_conf 8998648889999999999856
|