Citrus Sinensis ID: 005545

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
Protein Sequence
MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEEcccccccccccccccccccccccccccccEEEEEccEEEEEEccccccHHHHHHHHHcccccccEEEEEEccccccccccccEEEEEEcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHcccEEEEccccEEEEcccccHHHHHHHcccccccccccHHHHHHHHHccccccccccHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccccccccEEHHcccHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHcccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEEccEEEEEEccHHHHHccccccccccccccEEEEEEEEEEEEccccEEEEEccccccHHHHHHHHHcccccccEEEEEEcccccHHHHHEEEEEEEccccccccEEEHHHHHHHHHHccccHccHHHHHHHHHHHHHHHcccHHHHHcccccccHHccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccEEEEccHHHHHHHHHHcccccccccccHHHHHHHHHcHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccEHHEHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccEcccccHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mmppdhqqetsscmtgngppaantilsnrtdtvlvhaqpsvsannvspcsdddgisvqiqepplvIRFSILreslhpvtlkfEDVAYSINlhtskgscfatshgepnkqtrTVSVLNgvsgmvkpgellamlgpsgsgkTTLLTALAGRlrgkfsgkityngrqfssslkrktgfvtqddvlyphltVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGltrcrnsvvggplfrgisggerkrvSIGQemlvnpscllldeptsgldstTAQRIVATLRGLarggrtvittihqpssrlyRMFDKVVvlsegspiysgrAAQVMDYFgsigyvpgfnllnpADFLLDLAngiapdvkqddqlefhgrlehhddqnatKQSLISSYKKNLHPALMAEIQQnvgdpiasgkssrkncdnewTASWWEQFKVLLKRGlqerkhesysYLRIFQVLSVSILSGLlwwhsdrshiQDQVGLLFFFSIfwgffplnnaifvfPQERAMLIKErssgmyrlSSYYFARMVgdlpmelvLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVqysanevyacgsglhcsvmefpaikylgvdnKLIDVAALTMMLVGYRLLAYVTLRMRQPH
Flexible Loop (DISEMBL)
MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGscfatshgepnkqTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLrgkfsgkityngrqfssslkrkTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELgltrcrnsvvggplfrgisggerKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATlrglarggrtvittihqpssrlyrMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRlehhddqnaTKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH
Low Complexity Region (SEG)
MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPsgsgkttlltalagrlrgkFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLfffsifwgffPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPslitflltlsiilfNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH
Disordered region (IsUnstruct)
******************************************************ISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFA************VSVLNGVSGMVKPGELLAMLG****GKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDV**********************************************************CDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLR*****
Disordered Region (DISOPRED)
****************************************************************************PVTLKFEDVAYSINLHTSKGS****************SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVK*************************************************************WTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQP*
Disordered Region (DISEMBL)
**************TGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDP***********DNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH
Disordered Region (DISPRO)
******************************************************************RFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDP***GKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	691	2.2.26 [Sep-21-2011]
Q7XA72	672	ABC transporter G family	yes	no	0.962	0.989	0.667	0.0
Q9C6W5	648	ABC transporter G family	no	no	0.903	0.962	0.575	0.0
Q9SZR9	638	ABC transporter G family	no	no	0.890	0.963	0.530	0.0
Q93YS4	751	ABC transporter G family	no	no	0.890	0.818	0.469	1e-169
Q9FT51	737	ABC transporter G family	no	no	0.882	0.827	0.473	1e-164
Q84TH5	662	ABC transporter G family	no	no	0.895	0.935	0.475	1e-163
Q9LK50	685	ABC transporter G family	no	no	0.887	0.894	0.437	1e-149
Q9ZU35	725	ABC transporter G family	no	no	0.842	0.802	0.327	5e-86
Q8MIB3	656	ATP-binding cassette sub-	yes	no	0.784	0.826	0.320	1e-77
Q5MB13	654	ATP-binding cassette sub-	yes	no	0.743	0.785	0.330	2e-76

>sp|Q7XA72|AB21G_ARATH ABC transporter G family member 21 OS=Arabidopsis thaliana GN=ABCG21 PE=2 SV=2

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/691 (66%), Positives = 545/691 (78%), Gaps = 26/691 (3%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDD----DGIS 56
           MMPP+ Q+ +             T  +NR +T  V      S ++V+PC DD    DG S
Sbjct: 1   MMPPNEQESS----------FPKTPSANRHETSPVQENRFSSPSHVNPCLDDDNDHDGPS 50

Query: 57  VQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGS-CFATSHGEPNKQTRTVSV 115
            Q ++       S+LR+SL P+ LKFE++ YSI   T KGS  F +   +PN+      V
Sbjct: 51  HQSRQS------SVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRL-----V 99

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGF 175
           L  VSG+VKPGELLAMLGPSGSGKTTL+TALAGRL+GK SG ++YNG  F+SS+KRKTGF
Sbjct: 100 LKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKRKTGF 159

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
           VTQDDVLYPHLTV+ETL+Y ALLRLPK+LTR+EK+EQ EMV+ +LGLTRC NSV+GG L 
Sbjct: 160 VTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLI 219

Query: 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
           RGISGGERKRVSIGQEMLVNPS LLLDEPTSGLDSTTA RIVATLR LARGGRTV+TTIH
Sbjct: 220 RGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIH 279

Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIA 355
           QPSSRLYRMFDKV+VLSEG PIYSG + +VM+YFGSIGY PG + +NPADF+LDLANGI 
Sbjct: 280 QPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLANGIT 339

Query: 356 PDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRK 415
            D KQ DQ+E +GRL+  ++QN+ KQSLISSYKKNL+P L  E+ +       + +  +K
Sbjct: 340 SDTKQYDQIETNGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRTFPQDQTNARLRKK 399

Query: 416 NCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQ 475
              N W  SWW QF VLLKRGL+ER HES+S LRIF V+SVS+LSGLLWWHS  +H+QDQ
Sbjct: 400 AITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLSGLLWWHSRVAHLQDQ 459

Query: 476 VGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLP 535
           VGLLFFFSIFWGFFPL NAIF FPQER MLIKERSSG+YRLSSYY AR VGDLPMEL+LP
Sbjct: 460 VGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILP 519

Query: 536 TIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTML 595
           TIF+T+ YWMGGLKPSL TF++TL I+L+NVLVAQ +GL LGAI+MD K+A  L+SV ML
Sbjct: 520 TIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLML 579

Query: 596 VFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAI 655
           VFL+AGGYYIQH+  FIAWLKY+SFSHYCYKLLVGVQY+ +EVY CGSGLHCSVM++  I
Sbjct: 580 VFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQYTWDEVYECGSGLHCSVMDYEGI 639

Query: 656 KYLGVDNKLIDVAALTMMLVGYRLLAYVTLR 686
           K L + N + DV AL +ML+ YR+LAY+ LR
Sbjct: 640 KNLRIGNMMWDVLALAVMLLLYRVLAYLALR 670

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C6W5|AB14G_ARATH ABC transporter G family member 14 OS=Arabidopsis thaliana GN=ABCG14 PE=2 SV=1

 Score =  760 bits (1962), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/657 (57%), Positives = 486/657 (73%), Gaps = 33/657 (5%)

Query: 44  NNVSPCSDDDGISVQIQEPP--------LVIRFSI------LRESLHPVTLKFEDVAYSI 89
           N ++P  ++DG  V +Q  P         V+ F        L+ S++P+TLKFE+V Y +
Sbjct: 4   NCIAPRPEEDG-GVMVQGLPDMSDTQSKSVLAFPTITSQPGLQMSMYPITLKFEEVVYKV 62

Query: 90  NLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR 149
            +         TS    + +++  ++LNG++GMV PGE LAMLGPSGSGKTTLL+AL GR
Sbjct: 63  KIE-------QTSQCMGSWKSKEKTILNGITGMVCPGEFLAMLGPSGSGKTTLLSALGGR 115

Query: 150 LRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEK 209
           L   FSGK+ YNG+ FS  +KR+TGFV QDDVLYPHLTV ETL + ALLRLP  LTR+EK
Sbjct: 116 LSKTFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWETLFFTALLRLPSSLTRDEK 175

Query: 210 IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
            E  + VI ELGL RC NS++GGPLFRGISGGE+KRVSIGQEML+NPS LLLDEPTSGLD
Sbjct: 176 AEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLD 235

Query: 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
           STTA RIV T++ LA GGRTV+TTIHQPSSR+Y MFDKVV+LSEGSPIY G A+  ++YF
Sbjct: 236 STTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVLLSEGSPIYYGAASSAVEYF 295

Query: 330 GSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKK 389
            S+G+     + NPAD LLDLANGI PD +++             +Q   K++L+S+Y+K
Sbjct: 296 SSLGFSTSLTV-NPADLLLDLANGIPPDTQKETS---------EQEQKTVKETLVSAYEK 345

Query: 390 NLHPALMAEIQQNVGDPIASGKSSRKNCDNE-WTASWWEQFKVLLKRGLQERKHESYSYL 448
           N+   L AE+           K++ KN  +E W  +WW QF VLL+RG++ER+ ES++ L
Sbjct: 346 NISTKLKAELCNAESHSYEYTKAAAKNLKSEQWCTTWWYQFTVLLQRGVRERRFESFNKL 405

Query: 449 RIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKE 508
           RIFQV+SV+ L GLLWWH+ +SHIQD+  LLFFFS+FWGF+PL NA+F FPQE+ MLIKE
Sbjct: 406 RIFQVISVAFLGGLLWWHTPKSHIQDRTALLFFFSVFWGFYPLYNAVFTFPQEKRMLIKE 465

Query: 509 RSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLV 568
           RSSGMYRLSSY+ AR VGDLP+EL LPT F+ + YWMGGLKP   TF+L+L ++L++VLV
Sbjct: 466 RSSGMYRLSSYFMARNVGDLPLELALPTAFVFIIYWMGGLKPDPTTFILSLLVVLYSVLV 525

Query: 569 AQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLL 628
           AQ LGL  GA++M++KQAT LASVT LVFL+AGGYY+Q + PFI WLKY+S+S+YCYKLL
Sbjct: 526 AQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLL 585

Query: 629 VGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTL 685
           +G+QY+ ++ Y C  G+ C V +FPAIK +G++N  IDV  + +MLVGYRL+AY+ L
Sbjct: 586 LGIQYTDDDYYECSKGVWCRVGDFPAIKSMGLNNLWIDVFVMGVMLVGYRLMAYMAL 642

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZR9|AB9G_ARATH ABC transporter G family member 9 OS=Arabidopsis thaliana GN=ABCG9 PE=3 SV=2

 Score =  678 bits (1750), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/648 (53%), Positives = 462/648 (71%), Gaps = 33/648 (5%)

Query: 51  DDDGISVQIQEP------PLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHG 104
           D+  +S+ ++ P         + FSI +++ +PVTLKFE++ Y++ L  S+G CF     
Sbjct: 2   DNQEVSMDVETPIAKTNDDRSLPFSIFKKANNPVTLKFENLVYTVKLKDSQG-CFGK--- 57

Query: 105 EPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL---RGKFSGKITYN 161
             N +T   ++L G++G+VKPGE+LAMLGPSGSGKT+LLTAL GR+   +GK +G I+YN
Sbjct: 58  --NDKTEERTILKGLTGIVKPGEILAMLGPSGSGKTSLLTALGGRVGEGKGKLTGNISYN 115

Query: 162 GRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
            +  S ++KR TGFVTQDD LYP+LTV ETL + ALLRLP    ++EKI+QA+ V+ ELG
Sbjct: 116 NKPLSKAVKRTTGFVTQDDALYPNLTVTETLVFTALLRLPNSFKKQEKIKQAKAVMTELG 175

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
           L RC+++++GGP  RG+SGGERKRVSIGQE+L+NPS L LDEPTSGLDSTTAQRIV+ L 
Sbjct: 176 LDRCKDTIIGGPFLRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTTAQRIVSILW 235

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLL 341
            LARGGRTV+TTIHQPSSRL+ MFDK+++LSEG+P+Y G  +  MDYF S+GY P    +
Sbjct: 236 ELARGGRTVVTTIHQPSSRLFYMFDKLLLLSEGNPVYFGLGSNAMDYFASVGYSPLVERI 295

Query: 342 NPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEI-- 399
           NP+DFLLD+ANG+  D  Q  +              A K +L++ YK NL  +++ E+  
Sbjct: 296 NPSDFLLDIANGVGSDESQRPE--------------AMKAALVAFYKTNLLDSVINEVKG 341

Query: 400 QQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSIL 459
           Q ++ +          N   +W  +WW+QF VLLKRGL++R+H+S+S +++ Q+  VS L
Sbjct: 342 QDDLCNKPRESSRVATNTYGDWPTTWWQQFCVLLKRGLKQRRHDSFSGMKVAQIFIVSFL 401

Query: 460 SGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSY 519
            GLLWW +  S +QDQ+GLLFF S FW FFPL   IF FPQERAML KERSSGMYRLS Y
Sbjct: 402 CGLLWWQTKISRLQDQIGLLFFISSFWAFFPLFQQIFTFPQERAMLQKERSSGMYRLSPY 461

Query: 520 YFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAI 579
           + +R+VGDLPMEL+LPT F+ + YWM GL  +L  F +TL ++L +VLV+  LGL LGA+
Sbjct: 462 FLSRVVGDLPMELILPTCFLVITYWMAGLNHNLANFFVTLLVLLVHVLVSGGLGLALGAL 521

Query: 580 IMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVY 639
           +MD K AT L SV ML FL+AGGYY+QH+  FI+W+KY+S  +Y YKLL+  QY+ANE+Y
Sbjct: 522 VMDQKSATTLGSVIMLTFLLAGGYYVQHVPVFISWIKYVSIGYYTYKLLILGQYTANELY 581

Query: 640 ACGSG--LHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTL 685
            CG    L C V +F  IK++G ++ L+   ALT MLV YR++AY+ L
Sbjct: 582 PCGDNGKLRCHVGDFEGIKHIGFNSGLVSALALTAMLVVYRVIAYIAL 629

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YS4|AB22G_ARATH ABC transporter G family member 22 OS=Arabidopsis thaliana GN=ABCG22 PE=1 SV=1

 Score =  597 bits (1539), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 312/665 (46%), Positives = 439/665 (66%), Gaps = 50/665 (7%)

Query: 37  AQPSVSANNVSPCSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKG 96
           A P    ++  P SDD+ I   I+      +F    E   P+ LKF DV Y + +     
Sbjct: 116 AMPPEEISDSKPFSDDEMIPEDIEAGKKKPKFQA--EPTLPIFLKFRDVTYKVVI----- 168

Query: 97  SCFATSHGEPNKQTRTVS--VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGK 153
                      K T +V   +L G+SG V PGE+LA++GPSGSGKTTLL+ LAGR+ +  
Sbjct: 169 ----------KKLTSSVEKEILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSS 218

Query: 154 FSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA 213
             G +TYN + +S  LK K GFVTQDDVL+PHLTV ETL+YAA LRLPK LTRE+K ++A
Sbjct: 219 TGGSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRA 278

Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
             VI ELGL RC+++++GG   RG+SGGERKRVSIG E+++NPS LLLDEPTSGLDSTTA
Sbjct: 279 LDVIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTA 338

Query: 274 QRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIG 333
            R +  L  +A  G+TVITTIHQPSSRL+  FDK+++L  GS +Y G++++ +DYF SIG
Sbjct: 339 LRTILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIG 398

Query: 334 YVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQ---SLISSYKKN 390
             P    +NPA+FLLDLANG   D+    +L+   ++ +   +  T +   + +  Y   
Sbjct: 399 CSP-LIAMNPAEFLLDLANGNINDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVE 457

Query: 391 LHPALMAEIQQN-VGDPI-----ASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHES 444
            +   +AE ++  + DP+     A  KS+R     +W   WWEQ+ +L  RGL+ER+HE 
Sbjct: 458 AYETRVAEQEKKKLLDPVPLDEEAKAKSTR--LKRQWGTCWWEQYCILFCRGLKERRHEY 515

Query: 445 YSYLRIFQVLSVSILSGLLWWHSDRSH---IQDQVGLLFFFSIFWGFFPLNNAIFVFPQE 501
           +S+LR+ QVLS +++ GLLWW SD      +QDQ GLLFF ++FWGFFP+  AIF FPQE
Sbjct: 516 FSWLRVTQVLSTAVILGLLWWQSDIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQE 575

Query: 502 RAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSI 561
           RAML KER++ MYRLS+Y+ AR   DLP++ +LP++F+ V Y+M GL+ S   F L++  
Sbjct: 576 RAMLNKERAADMYRLSAYFLARTTSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLT 635

Query: 562 ILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFS 621
           +   ++ AQ LGL +GAI+MD+K+AT LASVT++ F++AGG++++ +  FI+W++Y+SF+
Sbjct: 636 VFLCIIAAQGLGLAIGAILMDLKKATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFN 695

Query: 622 HYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLA 681
           ++ YKLL+ VQY    V               +I  + +DN L +VAAL +M+ GYRLLA
Sbjct: 696 YHTYKLLLKVQYQDFAV---------------SINGMRIDNGLTEVAALVVMIFGYRLLA 740

Query: 682 YVTLR 686
           Y++LR
Sbjct: 741 YLSLR 745

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FT51|AB27G_ARATH ABC transporter G family member 27 OS=Arabidopsis thaliana GN=ABCG27 PE=2 SV=1

 Score =  580 bits (1495), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 309/652 (47%), Positives = 427/652 (65%), Gaps = 42/652 (6%)

Query: 49  CSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNK 108
           CS+DD +         V++F    E   P+ LKF D+ Y +   T+KG    TS  E   
Sbjct: 116 CSNDDILEDIEAATSSVVKFQA--EPTFPIYLKFIDITYKV---TTKG---MTSSSEK-- 165

Query: 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK-FSGKITYNGRQFSS 167
                S+LNG+SG   PGELLA++GPSGSGKTTLL AL GR   +   G ++YN + +S 
Sbjct: 166 -----SILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQNIGGSVSYNDKPYSK 220

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
            LK + GFVTQDDVL+PHLTV ETL+Y ALLRLPK LT +EK ++A  VI ELGL RC++
Sbjct: 221 HLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQD 280

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
           +++GG   RG+SGGERKRV IG E++ NPS LLLDEPTS LDSTTA +IV  L  +A+ G
Sbjct: 281 TMIGGSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAG 340

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFL 347
           +T++TTIHQPSSRL+  FDK+VVLS GS +Y G+A++ M YF SIG  P    +NPA+FL
Sbjct: 341 KTIVTTIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLA-MNPAEFL 399

Query: 348 LDLANGIAPDVKQDDQLEFHG---RLE---HHDDQNATKQSLISSYKKNLHPALMAEIQQ 401
           LDL NG   D+     L+      RLE    +   +   Q L  +YK  +  A+M +++ 
Sbjct: 400 LDLVNGNMNDISVPSALKEKMKIIRLELYVRNVKCDVETQYLEEAYKTQI--AVMEKMKL 457

Query: 402 NVGDPIASGKSSRKNC-DNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILS 460
               P+         C   EW  SWWEQ+ +L  RG++ER+H+ +S+LR+ QVLS +I+ 
Sbjct: 458 MAPVPLDEEVKLMITCPKREWGLSWWEQYCLLSLRGIKERRHDYFSWLRVTQVLSTAIIL 517

Query: 461 GLLWWHSD-RSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSY 519
           GLLWW SD  S    + GLLFF ++FWGFFP+  AIF FPQERAML KER S MYRLS+Y
Sbjct: 518 GLLWWQSDITSQRPTRSGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRLSAY 577

Query: 520 YFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAI 579
           + AR   DLP++L+LP +F+ V Y+M GL+    +F L++  +   ++ AQ LGL +GA 
Sbjct: 578 FVARTTSDLPLDLILPVLFLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGLGLAIGAS 637

Query: 580 IMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVY 639
           +MD+K+AT LASVT++ F++AGGY+++ +  FIAW++++SF+++ YKLLV VQY      
Sbjct: 638 LMDLKKATTLASVTVMTFMLAGGYFVKKVPFFIAWIRFMSFNYHTYKLLVKVQYE----- 692

Query: 640 ACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH 691
                    +ME  ++    +++ L +V+AL  M++GYRL+AY +LR  + H
Sbjct: 693 --------EIME--SVNGEEIESGLKEVSALVAMIIGYRLVAYFSLRRMKLH 734

Arabidopsis thaliana (taxid: 3702)

>sp|Q84TH5|AB25G_ARATH ABC transporter G family member 25 OS=Arabidopsis thaliana GN=ABCG25 PE=2 SV=1

 Score =  574 bits (1479), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 318/669 (47%), Positives = 429/669 (64%), Gaps = 50/669 (7%)

Query: 53  DGISVQIQEPPLVIRFS--------ILRESLHPVTLKFEDVAYSINLH-TSKGSCFATS- 102
           DG+  Q+  P    R S        +L  S  P+TLKF DV Y + +H  S  SC     
Sbjct: 5   DGVENQMNGPDSSPRLSQDPREPRSLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKL 64

Query: 103 ---HGEPNKQTRTV---SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-KFS 155
                +P+ +TR+    ++L+GV+GM+ PGE +A+LGPSGSGK+TLL A+AGRL G   +
Sbjct: 65  LGLKQKPSDETRSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLT 124

Query: 156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM 215
           GKI  N  + +    ++TGFV QDD+LYPHLTV ETL + ALLRLP+ LTR+ K+  AE 
Sbjct: 125 GKILINDGKITKQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAES 184

Query: 216 VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           VI ELGLT+C N+VVG    RGISGGERKRVSI  E+L+NPS L+LDEPTSGLD+T A R
Sbjct: 185 VISELGLTKCENTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALR 244

Query: 276 IVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGY 334
           +V TL GLA G G+TV+T+IHQPSSR+++MFD V++LSEG  ++ G+    M YF S+G+
Sbjct: 245 LVQTLAGLAHGKGKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGF 304

Query: 335 VPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPA 394
            P F + NPADFLLDLANG+     Q D +          ++   +Q+L+++Y   L P 
Sbjct: 305 SPAFPM-NPADFLLDLANGVC----QTDGVT-------EREKPNVRQTLVTAYDTLLAPQ 352

Query: 395 LMAEIQ-QNVGDPIASGKSSRKNCDNEWT--ASWWEQFKVLLKRGLQERKHESYSYLRIF 451
           +   I+  +     A    +R N     T  A+W+ Q  +LL R L+ER+HES+  LRIF
Sbjct: 353 VKTCIEVSHFPQDNARFVKTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIF 412

Query: 452 QVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSS 511
           QV++ SIL GL+WWHSD   + D++GLLFF SIFWG  P  NA+F FPQERA+  +ER+S
Sbjct: 413 QVVAASILCGLMWWHSDYRDVHDRLGLLFFISIFWGVLPSFNAVFTFPQERAIFTRERAS 472

Query: 512 GMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQS 571
           GMY LSSY+ A ++G L MELVLP  F+T  YWM  L+P ++ FLLTLS++L  VL +Q 
Sbjct: 473 GMYTLSSYFMAHVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQG 532

Query: 572 LGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGV 631
           LGL LGA IMD K+A+ + +VTML F++ GGYY+  +   + W+KY+S + YCY+LLV +
Sbjct: 533 LGLALGAAIMDAKKASTIVTVTMLAFVLTGGYYVNKVPSGMVWMKYVSTTFYCYRLLVAI 592

Query: 632 QYSANE----VYACGS----------GLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGY 677
           QY + E    +  C S             C  +E   I  +G+      V  L +M  GY
Sbjct: 593 QYGSGEEILRMLGCDSKGKQGASAATSAGCRFVEEEVIGDVGM---WTSVGVLFLMFFGY 649

Query: 678 RLLAYVTLR 686
           R+LAY+ LR
Sbjct: 650 RVLAYLALR 658

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LK50|AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=2 SV=2

 Score =  529 bits (1362), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 275/629 (43%), Positives = 397/629 (63%), Gaps = 16/629 (2%)

Query: 71  LRESLHPVTLKFEDVAYSI-NLHTSKGSCFAT------SHGEPNKQTRTVSVLNGVSGMV 123
           L ++  P+ LKFEDV Y + N H S  +   T      +H  P+       +L G++G  
Sbjct: 56  LEDAPLPIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYK-HILKGITGST 114

Query: 124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLY 183
            PGE+LA++GPSGSGKTTLL  + GRL     GK+TYN   +S S+KR+ GFVTQDDVL 
Sbjct: 115 GPGEILALMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQDDVLL 174

Query: 184 PHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGER 243
           P LTV ETL++AA LRLP  +++E+K  + EM+I ELGL RCR + VGG   +GISGGER
Sbjct: 175 PQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGER 234

Query: 244 KRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303
           KR SI  E+LV+PS LLLDEPTSGLDST+A +++  L+G+A+ GRTVITTIHQPSSR++ 
Sbjct: 235 KRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFH 294

Query: 304 MFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQ 363
           MFDK++++SEG P + G+A + M+YF S+  +P    +NPA+FLLDLA G   D+   D+
Sbjct: 295 MFDKLLLISEGHPAFYGKARESMEYFSSLRILPEIA-MNPAEFLLDLATGQVSDISLPDE 353

Query: 364 LEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTA 423
           L    +    D +    + L   YK +L P    E  +N   P             +WT 
Sbjct: 354 L-LAAKTAQPDSEEVLLKYLKQRYKTDLEPKEKEENHRNRKAP--EHLQIAIQVKKDWTL 410

Query: 424 SWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSD---RSHIQDQVGLLF 480
           SWW+QF +L +R  +ER+ + +  LR+ Q L V+++ GLLWW S     +H++DQVGL+F
Sbjct: 411 SWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMF 470

Query: 481 FFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFIT 540
           +  IFW    L  A++VFP E+  L+KER + MYRLS YY    + D+   ++ PT F+ 
Sbjct: 471 YICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFMI 530

Query: 541 VAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMA 600
           + Y+M     ++  FL T+  IL   + +Q  G  LGA ++ +K+A  +AS+ +++FL+ 
Sbjct: 531 IVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLLT 590

Query: 601 GGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVME-FPAIKYLG 659
           GGYY+QH+  F+ WLKY+SF HY ++LL+ VQYSA++++ CGS   C  ++   +   + 
Sbjct: 591 GGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFDTIN 650

Query: 660 VDNKLIDVAALTMMLVGYRLLAYVTLRMR 688
           ++  L ++  L  M  GYRL AY  LR +
Sbjct: 651 LNGGLQELWVLLAMAFGYRLCAYFCLRKK 679

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU35|AB7G_ARATH ABC transporter G family member 7 OS=Arabidopsis thaliana GN=ABCG7 PE=1 SV=1

 Score =  319 bits (818), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 208/636 (32%), Positives = 339/636 (53%), Gaps = 54/636 (8%)

Query: 73  ESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAML 132
           +S+ PVT+++ ++  S++  +SK   F               +L  VSG  KPG LLA++
Sbjct: 63  DSIRPVTIRWRNITCSLSDKSSKSVRF---------------LLKNVSGEAKPGRLLAIM 107

Query: 133 GPSGSGKTTLLTALAGRL----RGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTV 188
           GPSGSGKTTLL  LAG+L    R   SG +  NG+  SSS   K  FV Q+D+ +  LTV
Sbjct: 108 GPSGSGKTTLLNVLAGQLSLSPRLHLSGLLEVNGKP-SSSKAYKLAFVRQEDLFFSQLTV 166

Query: 189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSI 248
            ETLS+AA L+LP+  + EE+ E    ++++LGL  C +S VG    RGISGGE+KR+S+
Sbjct: 167 RETLSFAAELQLPEISSAEERDEYVNNLLLKLGLVSCADSCVGDAKVRGISGGEKKRLSL 226

Query: 249 GQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308
             E++ +PS +  DEPT+GLD+  A++++ TL+ LA+ G TVI +IHQP   +Y  FD +
Sbjct: 227 ACELIASPSVIFADEPTTGLDAFQAEKVMETLQKLAQDGHTVICSIHQPRGSVYAKFDDI 286

Query: 309 VVLSEGSPIYSGRAA-QVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFH 367
           V+L+EG+ +Y+G A  + + YFG+ G++   + +NPA+FL DL   I+ D    + +   
Sbjct: 287 VLLTEGTLVYAGPAGKEPLTYFGNFGFLCPEH-VNPAEFLADL---ISVDYSSSETVYSS 342

Query: 368 GRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWE 427
            +  H         +L+ ++ +     L A    ++ +   +G   R+    E T  WW 
Sbjct: 343 QKRVH---------ALVDAFSQRSSSVLYA-TPLSMKEETKNGMRPRRKAIVERTDGWWR 392

Query: 428 QFKVLLKRG-LQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSH--IQDQVGLLFFFSI 484
           QF +LLKR  +Q  +    + +R    ++ +++ G ++W   +S   IQD++GLL   +I
Sbjct: 393 QFFLLLKRAWMQASRDGPTNKVRARMSVASAVIFGSVFWRMGKSQTSIQDRMGLLQVAAI 452

Query: 485 FWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYW 544
                 L   + VFP+ERA++ +ERS G Y L  Y  ++ + ++P+    P +F  V Y 
Sbjct: 453 NTAMAALTKTVGVFPKERAIVDRERSKGSYSLGPYLLSKTIAEIPIGAAFPLMFGAVLYP 512

Query: 545 MGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYY 604
           M  L P+L  F     I+      A ++GL +GA++   + A A+    M VF++ GGYY
Sbjct: 513 MARLNPTLSRFGKFCGIVTVESFAASAMGLTVGAMVPSTEAAMAVGPSLMTVFIVFGGYY 572

Query: 605 IQ-HMSPFI-AWLKYIS-----FSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKY 657
           +    +P I  W+   S     F   C     G+++     +   +G         A++ 
Sbjct: 573 VNADNTPIIFRWIPRASLIRWAFQGLCINEFSGLKFDHQNTFDVQTGEQ-------ALER 625

Query: 658 LGVDNKLI--DVAALTMMLVGYRLLAYVTLRMRQPH 691
           L    + I   +AA + +L+ +    Y+ L   +P 
Sbjct: 626 LSFGGRRIRETIAAQSRILMFWYSATYLLLEKNKPK 661

Arabidopsis thaliana (taxid: 3702)

>sp|Q8MIB3|ABCG2_PIG ATP-binding cassette sub-family G member 2 OS=Sus scrofa GN=ABCG2 PE=2 SV=1

 Score =  291 bits (744), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 183/571 (32%), Positives = 314/571 (54%), Gaps = 29/571 (5%)

Query: 71  LRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLA 130
           L+ S     L F D+ Y + + +    C  T   E         +L  ++G++KPG L A
Sbjct: 28  LKTSAGGAVLSFHDICYRVKVKSGFLFCRKTVEKE---------ILTNINGIMKPG-LNA 77

Query: 131 MLGPSGSGKTTLLTALAGRLRGK-FSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVL 189
           +LGP+G GK++LL  LA R      SG +  NG    ++ K  +G+V QDDV+   LTV 
Sbjct: 78  ILGPTGGGKSSLLDVLAARKDPHGLSGDVLINGAPRPANFKCNSGYVVQDDVVMGTLTVR 137

Query: 190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIG 249
           E L ++A LRLP  +T  EK E+  MVI ELGL +  +S VG    RG+SGGERKR SI 
Sbjct: 138 ENLQFSAALRLPTTMTNHEKNERINMVIQELGLDKVADSKVGTQFIRGVSGGERKRTSIA 197

Query: 250 QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV 309
            E++ +PS L LDEPT+GLDS+TA  ++  L+ +++ GRT+I +IHQP   ++++FD + 
Sbjct: 198 MELITDPSILFLDEPTTGLDSSTANAVLLLLKRMSKQGRTIIFSIHQPRYSIFKLFDSLT 257

Query: 310 VLSEGSPIYSGRAAQVMDYFGSIGY-VPGFNLLNPADFLLDLANGIAPDV--KQDDQLEF 366
           +L+ G  ++ G A + + YF SIGY    +N  NPADF LD+ NG +  V   + D+ E 
Sbjct: 258 LLASGRLMFHGPAREALGYFASIGYNCEPYN--NPADFFLDVINGDSSAVVLSRADRDEG 315

Query: 367 HGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNC---DNEWTA 423
               E   +++      ++++  N   +   + +  + D  + G+  +K+    +  +T 
Sbjct: 316 AQEPEEPPEKDTPLIDKLAAFYTN--SSFFKDTKVEL-DQFSGGRKKKKSSVYKEVTYTT 372

Query: 424 SWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWW--HSDRSHIQDQVGLLF 480
           S+  Q + + +R  +    +   S  +I   + + ++ G +++   +D S IQ++ G+LF
Sbjct: 373 SFCHQLRWISRRSFKNLLGNPQASVAQIIVTIILGLVIGAIFYDLKNDPSGIQNRAGVLF 432

Query: 481 FFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGD-LPMELVLPTIFI 539
           F +    F  + +A+ +   E+ + I E  SG YR+SSY+F +++ D LPM ++   IF 
Sbjct: 433 FLTTNQCFSSV-SAVELLVVEKKLFIHEYISGYYRVSSYFFGKLLSDLLPMRMLPSIIFT 491

Query: 540 TVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLM 599
            + Y++ GLKP++ +F + +  ++     A S+ L + A    V  AT L +++ +  ++
Sbjct: 492 CITYFLLGLKPAVGSFFIMMFTLMMVAYSASSMALAIAAGQSVVSVATLLMTISFVFMMI 551

Query: 600 AGGYYI--QHMSPFIAWLKYISFSHYCYKLL 628
             G  +  + + P+++WL+Y S   Y +  L
Sbjct: 552 FSGLLVNLKTVVPWLSWLQYFSIPRYGFSAL 582

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux.

Sus scrofa (taxid: 9823)

>sp|Q5MB13|ABCG2_MACMU ATP-binding cassette sub-family G member 2 OS=Macaca mulatta GN=ABCG2 PE=2 SV=1

 Score =  287 bits (734), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 177/536 (33%), Positives = 294/536 (54%), Gaps = 22/536 (4%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKITYNGRQ 164
           P ++     +L+ ++G++KPG L A+LGP+G GK++LL  LA R      SG +  NG  
Sbjct: 54  PGRKPVEKEILSNINGIMKPG-LNAILGPTGGGKSSLLDVLAARKDPSGLSGDVLINGAL 112

Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
             ++ K  +G+V QDDV+   LTV E L ++A LRLP  +T  EK E+   VI ELGL +
Sbjct: 113 RPTNFKCNSGYVVQDDVVMGTLTVRENLQFSAALRLPTTMTNHEKNERINRVIQELGLDK 172

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             +S VG    RG+SGGERKR SIG E++ +PS L LDEPT+GLDS+TA  ++  L+ ++
Sbjct: 173 VADSKVGTQFIRGVSGGERKRTSIGMELITDPSILFLDEPTTGLDSSTANAVLLLLKRMS 232

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGY-VPGFNLLNP 343
           + GRT+I +IHQP   ++++FD + +L+ G  ++ G A + + YF S GY    +N  NP
Sbjct: 233 KQGRTIIFSIHQPRYSIFKLFDSLTLLASGRLMFHGPAQEALGYFESAGYHCEAYN--NP 290

Query: 344 ADFLLDLANGIAPDVKQDDQLEFHGR--LEHHDDQNATKQSLISSY-KKNLHPALMAEIQ 400
           ADF LD+ NG +  V  + + +F     +E         + L   Y   + +    AE+ 
Sbjct: 291 ADFFLDIINGDSTAVALNREEDFKATEIIEPSKRDKPLVEKLAEIYVDSSFYKETKAELH 350

Query: 401 QNVGDPIASGKSSRKNCDNE--WTASWWEQFKVLLKRGLQE---RKHESYSYLRIFQVLS 455
           Q     ++ G+  +     E  +T S+  Q + + KR  +        S + + +  +L 
Sbjct: 351 Q-----LSGGEKKKITVFKEISYTTSFCHQLRWVSKRSFKNLLGNPQASIAQIIVTVILG 405

Query: 456 VSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYR 515
           + I +     ++D + IQ++ G+LFF +    F  + +A+ +F  E+ + I E  SG YR
Sbjct: 406 LVIGAIYFGLNNDSTGIQNRAGVLFFLTTNQCFSSV-SAVELFVVEKKLFIHEYISGYYR 464

Query: 516 LSSYYFARMVGD-LPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGL 574
           +SSY+F +++ D LPM ++   IF  + Y+M GLKP+   F + +  ++     A S+ L
Sbjct: 465 VSSYFFGKLLSDLLPMRMLPSIIFTCIVYFMLGLKPTADAFFIMMFTLMMVAYSASSMAL 524

Query: 575 LLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLL 628
            + A    V  AT L ++  +  ++  G  +    ++ +++WL+Y S   Y +  L
Sbjct: 525 AIAAGQSVVSVATLLMTICFVFMMIFSGLLVNLTTIASWLSWLQYFSIPRYGFTAL 580

Xenobiotic transporter that may play an important role in the exclusion of xenobiotics from the brain. May be involved in brain-to-blood efflux (By similarity). When overexpressed, the transfected cells become resistant to mitoxantrone. Overexpression in bone marrow stem cells does not interfere with hematopoietic stem cell maturation and increases the number of SP cells.

Macaca mulatta (taxid: 9544)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
224108571	683	white-brown-complex ABC transporter fami	0.984	0.995	0.782	0.0
297737887	676	unnamed protein product [Vitis vinifera]	0.975	0.997	0.766	0.0
147809572	696	hypothetical protein VITISV_039480 [Viti	0.975	0.968	0.761	0.0
255566795	709	ATP-binding cassette transporter, putati	0.982	0.957	0.753	0.0
359472715	677	PREDICTED: LOW QUALITY PROTEIN: ABC tran	0.971	0.991	0.757	0.0
356576269	682	PREDICTED: ABC transporter G family memb	0.971	0.983	0.693	0.0
356502704	679	PREDICTED: ABC transporter G family memb	0.969	0.986	0.682	0.0
357443153	665	ABC transporter G family member [Medicag	0.934	0.971	0.707	0.0
297818076	671	hypothetical protein ARALYDRAFT_904727 [	0.962	0.991	0.668	0.0
334185623	672	ABC transporter G family member 21 [Arab	0.962	0.989	0.667	0.0

>gi|224108571|ref|XP_002314895.1| white-brown-complex ABC transporter family [Populus trichocarpa] gi|222863935|gb|EEF01066.1| white-brown-complex ABC transporter family [Populus trichocarpa]

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 543/694 (78%), Positives = 603/694 (86%), Gaps = 14/694 (2%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSA--NNVSPCSDDDGISVQ 58
           MMPP+ Q+ T+   TGN  P+ N +L+N T+TV VHA+PSVS+  NN S CS D    +Q
Sbjct: 1   MMPPE-QENTNISTTGNMGPS-NVMLTNWTETVTVHAEPSVSSSINNTSSCSQDQ--VLQ 56

Query: 59  IQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNG 118
            Q+ P + RF+ILR SL PVTL+F DVAYS++L T KG+ F +S  EP K TRTV  LNG
Sbjct: 57  GQQEPALSRFTILRASLRPVTLEFADVAYSVSLST-KGTWFTSS--EP-KSTRTV--LNG 110

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQ 178
            SG+V+PGELLAMLGPSGSGKTTLLTALAGRL GK SG ITYNG+ FSSS+KR+TGFVTQ
Sbjct: 111 ASGIVRPGELLAMLGPSGSGKTTLLTALAGRLPGKVSGTITYNGQAFSSSMKRRTGFVTQ 170

Query: 179 DDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI 238
           DDVLYPHLTVLETL+YAALLRLPKKLTR+EKIEQAE++IMELGLTRCRNSVVGGPLFRGI
Sbjct: 171 DDVLYPHLTVLETLTYAALLRLPKKLTRQEKIEQAELIIMELGLTRCRNSVVGGPLFRGI 230

Query: 239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS 298
           SGGERKRVSIG EMLVNPS LLLDEPTSGLDSTTAQRIVATLRGLARGGRTV+TTIHQPS
Sbjct: 231 SGGERKRVSIGLEMLVNPSLLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVVTTIHQPS 290

Query: 299 SRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDV 358
           SRLYRMFDKVVVLSEG PIYSG+A +VM+YF S+GY PGFN +NPADFLLDLANG+ PD 
Sbjct: 291 SRLYRMFDKVVVLSEGCPIYSGQAGRVMEYFKSLGYNPGFNFMNPADFLLDLANGLVPDT 350

Query: 359 K-QDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNC 417
           + QDDQLEFHGRL+HHDDQN+ KQSLISSYK NL+P L++EI +N  DP+    SS +  
Sbjct: 351 RSQDDQLEFHGRLDHHDDQNSAKQSLISSYKNNLYPLLISEIHRNAQDPVLP-SSSLRGS 409

Query: 418 DNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVG 477
           + +WT S W+QFKVLL+RGLQERKHESYS LRIFQV+SVSILSGLLWWHSD SHIQDQVG
Sbjct: 410 EVQWTTSCWQQFKVLLRRGLQERKHESYSGLRIFQVISVSILSGLLWWHSDTSHIQDQVG 469

Query: 478 LLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTI 537
           LLFFFSIFWGFFPL NAIF FPQER MLIKERSSGMYRLSSYYFARM GDLPMELV+PTI
Sbjct: 470 LLFFFSIFWGFFPLFNAIFAFPQERPMLIKERSSGMYRLSSYYFARMAGDLPMELVMPTI 529

Query: 538 FITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVF 597
           F+TV YWMGGLKPSLITF+LTL +ILFNVLV+Q LGL LGAI+MDVKQAT LASVTMLVF
Sbjct: 530 FVTVTYWMGGLKPSLITFVLTLLVILFNVLVSQGLGLALGAILMDVKQATTLASVTMLVF 589

Query: 598 LMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKY 657
           L+AGGYYIQH+ PFIAWLKYISFSHYCYKLLVGVQYSA EVY CG  +HC VM+FPAIKY
Sbjct: 590 LLAGGYYIQHIPPFIAWLKYISFSHYCYKLLVGVQYSATEVYDCGLQMHCRVMDFPAIKY 649

Query: 658 LGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH 691
           LG+DN   D AALT+MLVGYRLLAYV LRM QPH
Sbjct: 650 LGLDNMWWDAAALTIMLVGYRLLAYVALRMGQPH 683

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737887|emb|CBI27088.3| unnamed protein product [Vitis vinifera]

 Score = 1020 bits (2637), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 531/693 (76%), Positives = 595/693 (85%), Gaps = 19/693 (2%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQ 60
           MMPP+  QET   +TG+    AN + +NR + V +HA  +  A+NVSPC +D     Q  
Sbjct: 1   MMPPE--QETR--ITGD---PANVLGANRIENVTIHA--AEPASNVSPCLEDQTPDGQQT 51

Query: 61  EPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVS 120
             P   +FSILRESL PVTLKFEDV Y I L +++GSCF +   EP KQ+RTV  LNGVS
Sbjct: 52  TRP---QFSILRESLRPVTLKFEDVVYVIKLRSTEGSCFGSP--EP-KQSRTV--LNGVS 103

Query: 121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDD 180
           G+ +PGELLAMLGPSGSGKTTLLTALAGRL GK SG ITYNG+ FSSS+KRKTGFVTQDD
Sbjct: 104 GIARPGELLAMLGPSGSGKTTLLTALAGRLPGKVSGNITYNGQPFSSSMKRKTGFVTQDD 163

Query: 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISG 240
           VLYPHLTVLETL+YAALLRLPKKLTREEKIEQAE++I+ELGLTRCRNSV+GGPL RGISG
Sbjct: 164 VLYPHLTVLETLTYAALLRLPKKLTREEKIEQAELIIVELGLTRCRNSVIGGPLLRGISG 223

Query: 241 GERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR 300
           GERKRVSIGQEMLVNPS LLLDEPTSGLDSTTA RIVATLRGLA+GGRTVITTIHQPSSR
Sbjct: 224 GERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAHRIVATLRGLAQGGRTVITTIHQPSSR 283

Query: 301 LYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQ 360
           LYR FDK+VVLSEG PIYSG AA V++YFG+IGY+PGF+LLNPADFLLDLANG+APDV++
Sbjct: 284 LYRTFDKLVVLSEGCPIYSGNAANVLEYFGTIGYLPGFSLLNPADFLLDLANGVAPDVRK 343

Query: 361 DDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNV--GDPIASGKSSRKNCD 418
           DDQ +FHGR +HHDDQN+ KQ+LISSYKK+L+  + AEI +N    D  ASG  S + C+
Sbjct: 344 DDQQDFHGRPDHHDDQNSIKQALISSYKKSLYHIMRAEIHRNSHGSDGSASGPLSSRGCE 403

Query: 419 NEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGL 478
           N+WT+SWWEQFKVLL+RGLQERKHESYS LRIFQV+SVSILSGLLWWHSD SHIQDQVGL
Sbjct: 404 NQWTSSWWEQFKVLLRRGLQERKHESYSGLRIFQVMSVSILSGLLWWHSDTSHIQDQVGL 463

Query: 479 LFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIF 538
           LFFFSIFWGFFPL NAIF FPQER MLI+ERSSGMYRLSSYYFARM GDLPMELVLPTIF
Sbjct: 464 LFFFSIFWGFFPLFNAIFTFPQERPMLIRERSSGMYRLSSYYFARMAGDLPMELVLPTIF 523

Query: 539 ITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFL 598
           +T+AYWMGGLKPSL+TF+LTL +IL+NVLV+Q LGL LGAIIMDVKQ TALASVTMLVFL
Sbjct: 524 VTIAYWMGGLKPSLLTFVLTLLVILYNVLVSQGLGLALGAIIMDVKQGTALASVTMLVFL 583

Query: 599 MAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYL 658
           +AGGYYIQH+ PFIAWLKYISFSHYCYKLLVGVQY+ NEVY CG  +HC V EFPAIKYL
Sbjct: 584 LAGGYYIQHIPPFIAWLKYISFSHYCYKLLVGVQYAENEVYECGLRMHCKVWEFPAIKYL 643

Query: 659 GVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH 691
           G+D+   DVAALT+M VGYR LAY  LRM Q H
Sbjct: 644 GIDHWAWDVAALTVMFVGYRALAYAALRMGQHH 676

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147809572|emb|CAN62390.1| hypothetical protein VITISV_039480 [Vitis vinifera]

 Score = 1016 bits (2627), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 525/689 (76%), Positives = 591/689 (85%), Gaps = 15/689 (2%)

Query: 5   DHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQEPPL 64
           ++   T + +TG+    AN + +NR + V +HA  +  A+NVSPC +D     Q    P 
Sbjct: 21  ENTGRTETRITGD---PANVLGANRIENVTIHA--AEPASNVSPCLEDQTPDGQQTTRP- 74

Query: 65  VIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVK 124
             +FSILRESL PVTLKFEDV Y I L +++GSCF +   EP KQ+RTV  LNGVSG+ +
Sbjct: 75  --QFSILRESLRPVTLKFEDVVYVIKLRSTEGSCFGSP--EP-KQSRTV--LNGVSGIAR 127

Query: 125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYP 184
           PGELLAMLGPSGSGKTTLLTALAGRL GK SG ITYNG+ FSSS+KRKTGFVTQDDVLYP
Sbjct: 128 PGELLAMLGPSGSGKTTLLTALAGRLPGKVSGNITYNGQPFSSSMKRKTGFVTQDDVLYP 187

Query: 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERK 244
           HLTVLETL+YAALLRLPKKLTREEKIEQAE++I+ELGLTRCRNSV+GGPL RGISGGERK
Sbjct: 188 HLTVLETLTYAALLRLPKKLTREEKIEQAELIIVELGLTRCRNSVIGGPLLRGISGGERK 247

Query: 245 RVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM 304
           RVSIGQEMLVNPS LLLDEPTSGLDSTTA RIVATLRGLA+GGRTVITTIHQPSSRLYR 
Sbjct: 248 RVSIGQEMLVNPSLLLLDEPTSGLDSTTAHRIVATLRGLAQGGRTVITTIHQPSSRLYRT 307

Query: 305 FDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQL 364
           FDK+VVLSEG PIYSG AA V++YFG+IGY+PGF+LLNPADFLLDLANG+APDV++DDQ 
Sbjct: 308 FDKLVVLSEGCPIYSGNAANVLEYFGTIGYLPGFSLLNPADFLLDLANGVAPDVRKDDQQ 367

Query: 365 EFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNV--GDPIASGKSSRKNCDNEWT 422
           +FHGR +HHDDQN+ KQ+LISSYKK+L+  + AEI +N    D  ASG  S + C+N+WT
Sbjct: 368 DFHGRPDHHDDQNSIKQALISSYKKSLYHIMRAEIHRNSHGSDGSASGPLSSRGCENQWT 427

Query: 423 ASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFF 482
           +SWWEQFKVLL+RGLQERKHESYS LRIFQV+SVSILSGLLWWHSD SHIQDQVGLLFFF
Sbjct: 428 SSWWEQFKVLLRRGLQERKHESYSGLRIFQVMSVSILSGLLWWHSDTSHIQDQVGLLFFF 487

Query: 483 SIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVA 542
           SIFWGFFPL NAIF FPQER MLI+ERSSGMYRLSSYYFARM GDLPMELVLPTIF+T+A
Sbjct: 488 SIFWGFFPLFNAIFTFPQERPMLIRERSSGMYRLSSYYFARMAGDLPMELVLPTIFVTIA 547

Query: 543 YWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGG 602
           YWMGGLKPSL+TF+LTL +IL+NVLV+Q LGL LGAIIMDVKQ TALASVTMLVFL+AGG
Sbjct: 548 YWMGGLKPSLLTFVLTLLVILYNVLVSQGLGLALGAIIMDVKQGTALASVTMLVFLLAGG 607

Query: 603 YYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDN 662
           YYIQH+ PFIAWLKYISFSHYCYKLLVGVQY+ NEVY CG  +HC V EFPAIKYLG+D+
Sbjct: 608 YYIQHIPPFIAWLKYISFSHYCYKLLVGVQYAENEVYECGLRMHCKVWEFPAIKYLGIDH 667

Query: 663 KLIDVAALTMMLVGYRLLAYVTLRMRQPH 691
              DVAALT+M VGYR LAY  LRM Q H
Sbjct: 668 WAWDVAALTVMFVGYRALAYAALRMGQHH 696

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566795|ref|XP_002524381.1| ATP-binding cassette transporter, putative [Ricinus communis] gi|223536342|gb|EEF37992.1| ATP-binding cassette transporter, putative [Ricinus communis]

 Score = 1014 bits (2621), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/694 (75%), Positives = 591/694 (85%), Gaps = 15/694 (2%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQ 60
           MMPP  +      +T N PP  +  L+N T+TV V+A+PSVS+ N++PCS +    +  +
Sbjct: 28  MMPPLQENN----LTNNCPPN-HIALNNWTETVPVYAEPSVSSINLNPCSQEH--QLPDE 80

Query: 61  EPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVS 120
           E     RFSILRESL P+TLKFEDV YS+N  T+  SC   S  EP K  RTV  LNGVS
Sbjct: 81  EEQTQSRFSILRESLRPITLKFEDVEYSVNFSTNGSSC--CSRNEP-KSKRTV--LNGVS 135

Query: 121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDD 180
           G+V+PGELLAMLGPSGSGKTTLLTAL+GRL  K SG ITYNG  +SSS+KR TGFV QDD
Sbjct: 136 GIVRPGELLAMLGPSGSGKTTLLTALSGRLPVKVSGTITYNGLPYSSSMKRNTGFVAQDD 195

Query: 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISG 240
           +LYPHLTV+ETL+YAALLRLPKKL+++EKIEQAEMVIMELGL RCRNS++GGPL RG+SG
Sbjct: 196 ILYPHLTVIETLTYAALLRLPKKLSKQEKIEQAEMVIMELGLNRCRNSIIGGPLLRGVSG 255

Query: 241 GERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR 300
           GERKRVSIGQE+LVNPS LLLDEPTSGLDSTTAQRIVATL+GLARGGRT+ITTIHQPSSR
Sbjct: 256 GERKRVSIGQELLVNPSLLLLDEPTSGLDSTTAQRIVATLKGLARGGRTIITTIHQPSSR 315

Query: 301 LYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQ 360
           LYRMFDK+VVLS+G PIYSG A  VM+YFGSIGYVPGFN +NPADFLLDLANGI P  KQ
Sbjct: 316 LYRMFDKLVVLSDGCPIYSGLADPVMEYFGSIGYVPGFNFVNPADFLLDLANGIVPGTKQ 375

Query: 361 DDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPI---ASGKSSRKNC 417
           DDQLE HGRL+H DDQ++ KQSLISSYKKNL+PAL AEI++N  DP+   ++G SS +N 
Sbjct: 376 DDQLEVHGRLDHPDDQSSIKQSLISSYKKNLYPALKAEIRRNSQDPVLPSSTGTSSLRNS 435

Query: 418 DNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVG 477
           +N+W  +WW+QFKVLL+RGLQERKHESYS LRIFQV+SVSILSGLLWWHSD SHIQDQVG
Sbjct: 436 ENQWATTWWQQFKVLLRRGLQERKHESYSGLRIFQVMSVSILSGLLWWHSDTSHIQDQVG 495

Query: 478 LLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTI 537
           LLFFFSIFWGFFPL NAIF FPQER +LIKERSSGMYRLSSYYFARM GDLPMELV+P I
Sbjct: 496 LLFFFSIFWGFFPLFNAIFAFPQERPILIKERSSGMYRLSSYYFARMAGDLPMELVMPII 555

Query: 538 FITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVF 597
           F+TVAYWMGGLKPSLITF+LTL IILFNVLV+Q LGL LGA++MDVKQ T LASVTMLVF
Sbjct: 556 FVTVAYWMGGLKPSLITFVLTLLIILFNVLVSQGLGLALGAVLMDVKQGTTLASVTMLVF 615

Query: 598 LMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKY 657
           L+AGGYYIQH+  FIAWLKYISFSHYCYKLLVGVQYS NEVY C +G+HC VM+FPAI+Y
Sbjct: 616 LLAGGYYIQHIPAFIAWLKYISFSHYCYKLLVGVQYSVNEVYECEAGMHCRVMDFPAIRY 675

Query: 658 LGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH 691
           LG+DN   DVAAL +MLVGYR LAYV LRM QPH
Sbjct: 676 LGLDNMWWDVAALLIMLVGYRFLAYVALRMGQPH 709

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472715|ref|XP_003631190.1| PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 21-like [Vitis vinifera]

 Score = 1009 bits (2610), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 528/697 (75%), Positives = 593/697 (85%), Gaps = 26/697 (3%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISVQIQ 60
           MMPP+  QET   +TG+    AN + +NR + V +HA  +  A+NVSPC +D     Q  
Sbjct: 1   MMPPE--QETR--ITGD---PANVLGANRIENVTIHA--AEPASNVSPCLEDQTPDGQQT 51

Query: 61  EPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVS 120
             P   +FSILRESL PVTLKFEDV Y I L +++GSCF +   EP KQ+RTV  LNGVS
Sbjct: 52  TRP---QFSILRESLRPVTLKFEDVVYVIKLRSTEGSCFGSP--EP-KQSRTV--LNGVS 103

Query: 121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDD 180
           G+ +PGELLAMLGPSGSGKTTLLTALAGRL GK SG ITYNG+ FSSS+KRKTGFVTQDD
Sbjct: 104 GIARPGELLAMLGPSGSGKTTLLTALAGRLPGKVSGNITYNGQPFSSSMKRKTGFVTQDD 163

Query: 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISG 240
           VLYPHLTVLETL+YAALLRLPKKLTREEKIEQAE++I+ELGLTRCRNSV+GGPL RGISG
Sbjct: 164 VLYPHLTVLETLTYAALLRLPKKLTREEKIEQAELIIVELGLTRCRNSVIGGPLLRGISG 223

Query: 241 GERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR 300
           GERKRVSIGQEMLVNPS LLLDEPTSGLDSTTA RIVATLRGLA+GGRTVITTIHQPSSR
Sbjct: 224 GERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAHRIVATLRGLAQGGRTVITTIHQPSSR 283

Query: 301 LYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQ 360
           LYR FDK+VVLSEG PIYSG AA V++YFG+IGY+PGF+LLNPADFLLDLANG+APDV++
Sbjct: 284 LYRTFDKLVVLSEGCPIYSGNAANVLEYFGTIGYLPGFSLLNPADFLLDLANGVAPDVRK 343

Query: 361 DDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDP------IASGKSSR 414
           DDQ +FHGR +HHDDQN+ KQ+LISSYKK+L+  + AEI +N          I+ G +  
Sbjct: 344 DDQQDFHGRPDHHDDQNSIKQALISSYKKSLYHIMRAEIHRNSHADSXKFVLISKGVA-- 401

Query: 415 KNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQD 474
             C+N+WT+SWWEQFKVLL+RGLQERKHESYS LRIFQV+SVSILSGLLWWHSD SHIQD
Sbjct: 402 -GCENQWTSSWWEQFKVLLRRGLQERKHESYSGLRIFQVMSVSILSGLLWWHSDTSHIQD 460

Query: 475 QVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVL 534
           QVGLLFFFSIFWGFFPL NAIF FPQER MLI+ERSSGMYRLSSYYFARM GDLPMELVL
Sbjct: 461 QVGLLFFFSIFWGFFPLFNAIFTFPQERPMLIRERSSGMYRLSSYYFARMAGDLPMELVL 520

Query: 535 PTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTM 594
           PTIF+T+AYWMGGLKPSL+TF+LTL +IL+NVLV+Q LGL LGAIIMDVKQ TALASVTM
Sbjct: 521 PTIFVTIAYWMGGLKPSLLTFVLTLLVILYNVLVSQGLGLALGAIIMDVKQGTALASVTM 580

Query: 595 LVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPA 654
           LVFL+AGGYYIQH+ PFIAWLKYISFSHYCYKLLVGVQY+ NEVY CG  +HC V EFPA
Sbjct: 581 LVFLLAGGYYIQHIPPFIAWLKYISFSHYCYKLLVGVQYAENEVYECGLRMHCKVWEFPA 640

Query: 655 IKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH 691
           IKYLG+D+   DVAALT+M VGYR LAY  LRM Q H
Sbjct: 641 IKYLGIDHWAWDVAALTVMFVGYRALAYAALRMGQHH 677

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576269|ref|XP_003556255.1| PREDICTED: ABC transporter G family member 21-like [Glycine max]

 Score =  923 bits (2385), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 487/702 (69%), Positives = 554/702 (78%), Gaps = 31/702 (4%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVS-ANNVSPCS--DDDGISV 57
           MMPP  +QET+        PA  T    R +T  VH +   S  N + P    DD+GI  
Sbjct: 1   MMPP--EQETT---IATNIPAITT----RQETSSVHHESEGSNTNKIKPSLELDDNGIPP 51

Query: 58  QIQEPPLVI----RFSILRESLHPVTLKFEDVAYSINLHTSKGS-CFATSHGEPNKQTRT 112
           Q Q  P       RFS+L +SL P+TLKFEDV+Y+I   + K   C      +  ++   
Sbjct: 52  QQQTQPTTPPPPSRFSVLHQSLRPITLKFEDVSYTITFESQKKKGCVLRKESKLRRK--- 108

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRK 172
             VL GV+G+  PGEL AMLGPSGSGKTTLLTALAGRL GK SG ITYNG    + +KRK
Sbjct: 109 --VLTGVTGVANPGELTAMLGPSGSGKTTLLTALAGRLAGKVSGTITYNGHTDPTFVKRK 166

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
            GFV Q+DVLYPHLTVLETL+YAALLRLPK L+REEK E AEMVI ELGLTRCRNS VGG
Sbjct: 167 VGFVPQEDVLYPHLTVLETLTYAALLRLPKSLSREEKKEHAEMVITELGLTRCRNSPVGG 226

Query: 233 --PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
              LFRGISGGERKRVSIGQEMLVNPS L +DEPTSGLDSTTAQ IV+ LRGLA  GRTV
Sbjct: 227 CMALFRGISGGERKRVSIGQEMLVNPSLLFVDEPTSGLDSTTAQLIVSVLRGLALAGRTV 286

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDL 350
           +TTIHQPSSRLYRMFDKVVVLS+G PIYSG+A +VMDY GS+GYVP FN +NPADFLLDL
Sbjct: 287 VTTIHQPSSRLYRMFDKVVVLSDGYPIYSGQAGRVMDYLGSVGYVPAFNFMNPADFLLDL 346

Query: 351 ANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASG 410
           ANG+  DVK DDQ++      HH+DQ + KQSL+SS+KKNL+PAL  +I QN  DP A  
Sbjct: 347 ANGVVADVKHDDQID------HHEDQASVKQSLMSSFKKNLYPALKEDIHQNNTDPSALI 400

Query: 411 KSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRS 470
             + + CDN WT+SWWEQF+VLLKRGLQER+HES+S LRIFQVLSVSILSGLLWWHSD S
Sbjct: 401 SGTPRRCDNHWTSSWWEQFRVLLKRGLQERRHESFSGLRIFQVLSVSILSGLLWWHSDPS 460

Query: 471 HIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPM 530
           H+QDQVGLLFFFSIFWGFFPL NAIF FP ER MLIKERSSGMY+LSSYY ARMVGDLPM
Sbjct: 461 HVQDQVGLLFFFSIFWGFFPLFNAIFAFPLERPMLIKERSSGMYKLSSYYAARMVGDLPM 520

Query: 531 ELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALA 590
           ELVLPTIFIT++YWMGGL PSL+TF+LTL I+LFNVLV+Q +GL LGAI+MDVKQAT+LA
Sbjct: 521 ELVLPTIFITISYWMGGLNPSLVTFVLTLLIMLFNVLVSQGIGLALGAILMDVKQATSLA 580

Query: 591 SVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVM 650
           SVTMLVFL+AGGYYIQ M  FIAWLKYISFSHYCYKLLVGVQYS NEVY CG GLHC V 
Sbjct: 581 SVTMLVFLLAGGYYIQQMPAFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGQGLHCRVR 640

Query: 651 EFPAIKYLGVDNKLI-DVAALTMMLVGYRLLAYVTLRMRQPH 691
           +FPAIK L +++ +  DVAALT+ML+GYR++AY+ LRM QPH
Sbjct: 641 DFPAIKCLELEDTMWGDVAALTVMLIGYRVVAYLALRMGQPH 682

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502704|ref|XP_003520157.1| PREDICTED: ABC transporter G family member 21-like [Glycine max]

 Score =  914 bits (2362), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/699 (68%), Positives = 553/699 (79%), Gaps = 29/699 (4%)

Query: 2   MPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSA-NNVSPCSDDDGI----- 55
           MPP  QQETS  +T N P      + NR +   VHA+P  SA N++ P    + I     
Sbjct: 1   MPP--QQETS--ITSNIPA-----IPNRPENSYVHAEPPSSATNDIKPTFTSNDIHNNNS 51

Query: 56  SVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSV 115
           S   Q  P   RFS+L++SL PVTLKFEDV+YSI     K  C ++      K   T +V
Sbjct: 52  SQHHQAAPSAPRFSVLQQSLRPVTLKFEDVSYSITFGRDKNGCVSS-----QKPKHTKTV 106

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGF 175
           LNGV+GMV P E++AMLGPSGSGKTTLLTALAGRL GK SG ITYNG  FSSS+KR  GF
Sbjct: 107 LNGVTGMVGPREVMAMLGPSGSGKTTLLTALAGRLAGKLSGAITYNGHPFSSSMKRNIGF 166

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG--P 233
           V+QDDVLYPHLTVLETL+YAA+L+LPK LTRE+K+EQAEM+I+ELGL+RCRNS +GG   
Sbjct: 167 VSQDDVLYPHLTVLETLTYAAMLKLPKSLTREDKMEQAEMIIVELGLSRCRNSPIGGGSA 226

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
           LFRGISGGERKRVSIGQEMLVNPS LLLDEPTSGLDSTTAQRIVA L+  AR GRTV+TT
Sbjct: 227 LFRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAMLQSFARAGRTVVTT 286

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANG 353
           IHQPSSRLY MFDKVVVLS+G PI++G+  +VMDY  ++G+VP FN +NPADFLLDLANG
Sbjct: 287 IHQPSSRLYWMFDKVVVLSDGYPIFTGKTDRVMDYLETVGFVPAFNFVNPADFLLDLANG 346

Query: 354 IAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSS 413
           I  DVKQ++Q++      HH+DQ + KQ L+SSYKKNL+P L  EIQQN  +       +
Sbjct: 347 IVADVKQEEQID------HHEDQASIKQFLVSSYKKNLYPLLKQEIQQNHRELAFLNSGT 400

Query: 414 RKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQ 473
            ++ +N+WT SWWEQF VLLKRGL+ER+HESYS LRIFQVLSVSILSGLLWWHSD SHIQ
Sbjct: 401 PRSSENQWTTSWWEQFMVLLKRGLKERRHESYSGLRIFQVLSVSILSGLLWWHSDPSHIQ 460

Query: 474 DQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELV 533
           DQVGLLFFFSIFWGFFPL NAIF FP +R ML KERSSGMY LSSYY AR VGDLPMELV
Sbjct: 461 DQVGLLFFFSIFWGFFPLFNAIFAFPLDRPMLTKERSSGMYHLSSYYVARTVGDLPMELV 520

Query: 534 LPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVT 593
           LPTIF+T++YWMGGLKPSL+TF+LTL I+LFNVLV+Q +GL LGA++MDVKQAT LASVT
Sbjct: 521 LPTIFVTISYWMGGLKPSLVTFVLTLLIMLFNVLVSQGIGLALGALLMDVKQATTLASVT 580

Query: 594 MLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSG-LHCSVMEF 652
           MLVFL+AGGYYIQ +  FIAWLKYISFSHYCYKLLVGVQYS NEVY CG G LHC V +F
Sbjct: 581 MLVFLLAGGYYIQQIPFFIAWLKYISFSHYCYKLLVGVQYSVNEVYECGQGLLHCKVRDF 640

Query: 653 PAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQPH 691
           PAIK LG+D+   DVA L +M +GYR++AY+ LRM   H
Sbjct: 641 PAIKCLGLDSLWGDVAVLAVMFIGYRVVAYLALRMGLHH 679

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357443153|ref|XP_003591854.1| ABC transporter G family member [Medicago truncatula] gi|355480902|gb|AES62105.1| ABC transporter G family member [Medicago truncatula]

 Score =  905 bits (2339), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 472/667 (70%), Positives = 536/667 (80%), Gaps = 21/667 (3%)

Query: 29  RTDTVLVHAQPS-VSANNVSPCSDDDGISVQIQEPPL--VIRFSILRESLHPVTLKFEDV 85
            T+   +H +P   S+N V P  D D  ++ I   P   +  FSIL +SL PVTLKFEDV
Sbjct: 5   ETENSSIHGEPDGSSSNKVKPSLDIDHNAINIPSHPTTPLTSFSILPQSLRPVTLKFEDV 64

Query: 86  AYSINL-HTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLT 144
           +YSI + +  K  C     G+ +K TR   +LNGV+G+ +PGEL AMLGPSGSGKTTLLT
Sbjct: 65  SYSITMTNQKKNGCVM---GKESKVTR--KILNGVTGVARPGELTAMLGPSGSGKTTLLT 119

Query: 145 ALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL 204
           ALAGRL GK +G ITYNG   SS +KRK GFV+QDDV+YPHLTVLETL+Y ALLRLPK L
Sbjct: 120 ALAGRLAGKVTGTITYNGNSDSSCMKRKIGFVSQDDVVYPHLTVLETLTYTALLRLPKTL 179

Query: 205 TREEKIEQAEMVIMELGLTRCRNSVVGG--PLFRGISGGERKRVSIGQEMLVNPSCLLLD 262
           TREEK+E AE +I ELGLTRCRN+ VGG   LFRGISGGERKR+SIGQEMLVNPS L LD
Sbjct: 180 TREEKVEHAERIITELGLTRCRNTQVGGCMGLFRGISGGERKRMSIGQEMLVNPSLLFLD 239

Query: 263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRA 322
           EPTSGLDSTTAQ IV+ LRGLAR GRTV+TTIHQPSSRLYRMFDKVVVLS+G PIYSG A
Sbjct: 240 EPTSGLDSTTAQLIVSVLRGLARSGRTVVTTIHQPSSRLYRMFDKVVVLSDGYPIYSGNA 299

Query: 323 AQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHD-DQNATKQ 381
            +VMDY GS+G+VPGFN +NPADFLLDLANGI  DVK D+       +E HD DQ + KQ
Sbjct: 300 GRVMDYLGSVGFVPGFNFVNPADFLLDLANGIIADVKHDE-------IEQHDQDQASVKQ 352

Query: 382 SLISSYKKNLHPALMAEIQQNVGDPI--ASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE 439
           SLISSYKKNL+PAL  +IQ    +P+  AS  +SR++ DN+W  SWWEQFKVLLKRGLQE
Sbjct: 353 SLISSYKKNLYPALKEDIQHINTEPVVFASRGTSRRSSDNQWCTSWWEQFKVLLKRGLQE 412

Query: 440 RKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFP 499
           R+HES+S L+IFQVLSVSILSGLLWWHSD SHIQDQVGLLFFFSIFWGFFPL NAIF FP
Sbjct: 413 RRHESFSGLKIFQVLSVSILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAIFAFP 472

Query: 500 QERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTL 559
            +R ML KERSSGMY LSSYY ARMVGDLPMELVLPTIF+T+ YWMGGLKPSL+TF+LTL
Sbjct: 473 LDRPMLTKERSSGMYHLSSYYVARMVGDLPMELVLPTIFVTITYWMGGLKPSLVTFVLTL 532

Query: 560 SIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYIS 619
            I+LFNVLV+Q +GL LGAI+MDVKQAT LASVTMLVFL+AGGYYIQ M  FIAWLKY S
Sbjct: 533 LIMLFNVLVSQGIGLALGAILMDVKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYFS 592

Query: 620 FSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRL 679
           FSHYCYKLLVGVQ+S NEVY C  GLHC   +FPAIK L + N   DVAALT+M VGYR+
Sbjct: 593 FSHYCYKLLVGVQFSVNEVYECREGLHCRARDFPAIKCLELGNMWGDVAALTIMFVGYRV 652

Query: 680 LAYVTLR 686
           +AY+ LR
Sbjct: 653 VAYLALR 659

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818076|ref|XP_002876921.1| hypothetical protein ARALYDRAFT_904727 [Arabidopsis lyrata subsp. lyrata] gi|297322759|gb|EFH53180.1| hypothetical protein ARALYDRAFT_904727 [Arabidopsis lyrata subsp. lyrata]

 Score =  895 bits (2313), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/690 (66%), Positives = 545/690 (78%), Gaps = 25/690 (3%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDD--GISVQ 58
           MMPP+ Q+ +     G          +NR +T  V      S ++V PC DDD  G S Q
Sbjct: 1   MMPPNEQESSFPKTPG----------ANRHETSPVQDNRLSSPSHVIPCLDDDHDGPSHQ 50

Query: 59  IQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGS-CFATSHGEPNKQTRTVSVLN 117
            ++       S+LR+SL P+ LKFE+++YSI   T KGS  F +   +PN+      +LN
Sbjct: 51  SRQS------SVLRQSLRPIILKFEELSYSIKSQTGKGSYWFGSQEPKPNRL-----ILN 99

Query: 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVT 177
           GVSG+VKPGELLAMLGPSGSGKTTL+TALAGRL+GK SG ++YNG  F+SS+KRKTGFVT
Sbjct: 100 GVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKRKTGFVT 159

Query: 178 QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG 237
           QDDVLYPHLTV+ETL+Y ALLRLPK+LTR+EKIEQAE V+ +LGLTRC NSV+GG L RG
Sbjct: 160 QDDVLYPHLTVMETLTYTALLRLPKELTRKEKIEQAETVVSDLGLTRCCNSVIGGGLIRG 219

Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
           ISGGERKRVSIGQEMLVNPS LLLDEPTSGLDSTTA RIVATLR LARGGRTV+TTIHQP
Sbjct: 220 ISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAVRIVATLRSLARGGRTVVTTIHQP 279

Query: 298 SSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPD 357
           SSRLYRMFDKV+VLSEG PIYSG + +VM+Y GSIGY PG + +NPADF+LDLANGI  D
Sbjct: 280 SSRLYRMFDKVLVLSEGCPIYSGNSGRVMEYLGSIGYQPGSSFVNPADFVLDLANGITSD 339

Query: 358 VKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNV-GDPIASGKSSRKN 416
            KQ DQ+E +GRL+  ++QN+ KQSLISSYKKNL+P L  E+ +    D   +   ++  
Sbjct: 340 TKQYDQVEINGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRTFPQDQTITRSRTKSL 399

Query: 417 CDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQV 476
             N W  SWW QF VLLKRGL+ER HES+S LRIF V+SVS+LSGLLWWHS  +H+QDQV
Sbjct: 400 LTNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLSGLLWWHSRVAHLQDQV 459

Query: 477 GLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPT 536
           GLLFFFSIFWGFFPL NAIF FPQER MLIKERSSG+YRLSSYY AR VGDLPMEL+LPT
Sbjct: 460 GLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILPT 519

Query: 537 IFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLV 596
           IF+T+ YWMGGLKPSL TF++TL I+L+NVLVAQ +GL LGAI+MD K+A  L+SV MLV
Sbjct: 520 IFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLMLV 579

Query: 597 FLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIK 656
           FL+AGGYYIQH+  FIAWLKY+SFSHYCYKLLVGVQY+  EVY CGSGLHCSVM++  I+
Sbjct: 580 FLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQYTWGEVYECGSGLHCSVMDYEGIR 639

Query: 657 YLGVDNKLIDVAALTMMLVGYRLLAYVTLR 686
            L + N + DV AL +ML+ YR+LAY+ LR
Sbjct: 640 NLRIGNMMWDVLALAIMLLLYRVLAYLALR 669

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185623|ref|NP_001189973.1| ABC transporter G family member 21 [Arabidopsis thaliana] gi|322510007|sp|Q7XA72.2|AB21G_ARATH RecName: Full=ABC transporter G family member 21; Short=ABC transporter ABCG.21; Short=AtABCG21; AltName: Full=White-brown complex homolog protein 21; Short=AtWBC21 gi|11994752|dbj|BAB03081.1| ABC transporter-like protein [Arabidopsis thaliana] gi|332643523|gb|AEE77044.1| ABC transporter G family member 21 [Arabidopsis thaliana]

 Score =  887 bits (2292), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 461/691 (66%), Positives = 545/691 (78%), Gaps = 26/691 (3%)

Query: 1   MMPPDHQQETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDD----DGIS 56
           MMPP+ Q+ +             T  +NR +T  V      S ++V+PC DD    DG S
Sbjct: 1   MMPPNEQESS----------FPKTPSANRHETSPVQENRFSSPSHVNPCLDDDNDHDGPS 50

Query: 57  VQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGS-CFATSHGEPNKQTRTVSV 115
            Q ++       S+LR+SL P+ LKFE++ YSI   T KGS  F +   +PN+      V
Sbjct: 51  HQSRQS------SVLRQSLRPIILKFEELTYSIKSQTGKGSYWFGSQEPKPNRL-----V 99

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGF 175
           L  VSG+VKPGELLAMLGPSGSGKTTL+TALAGRL+GK SG ++YNG  F+SS+KRKTGF
Sbjct: 100 LKCVSGIVKPGELLAMLGPSGSGKTTLVTALAGRLQGKLSGTVSYNGEPFTSSVKRKTGF 159

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
           VTQDDVLYPHLTV+ETL+Y ALLRLPK+LTR+EK+EQ EMV+ +LGLTRC NSV+GG L 
Sbjct: 160 VTQDDVLYPHLTVMETLTYTALLRLPKELTRKEKLEQVEMVVSDLGLTRCCNSVIGGGLI 219

Query: 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
           RGISGGERKRVSIGQEMLVNPS LLLDEPTSGLDSTTA RIVATLR LARGGRTV+TTIH
Sbjct: 220 RGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAARIVATLRSLARGGRTVVTTIH 279

Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIA 355
           QPSSRLYRMFDKV+VLSEG PIYSG + +VM+YFGSIGY PG + +NPADF+LDLANGI 
Sbjct: 280 QPSSRLYRMFDKVLVLSEGCPIYSGDSGRVMEYFGSIGYQPGSSFVNPADFVLDLANGIT 339

Query: 356 PDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRK 415
            D KQ DQ+E +GRL+  ++QN+ KQSLISSYKKNL+P L  E+ +       + +  +K
Sbjct: 340 SDTKQYDQIETNGRLDRLEEQNSVKQSLISSYKKNLYPPLKEEVSRTFPQDQTNARLRKK 399

Query: 416 NCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQ 475
              N W  SWW QF VLLKRGL+ER HES+S LRIF V+SVS+LSGLLWWHS  +H+QDQ
Sbjct: 400 AITNRWPTSWWMQFSVLLKRGLKERSHESFSGLRIFMVMSVSLLSGLLWWHSRVAHLQDQ 459

Query: 476 VGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLP 535
           VGLLFFFSIFWGFFPL NAIF FPQER MLIKERSSG+YRLSSYY AR VGDLPMEL+LP
Sbjct: 460 VGLLFFFSIFWGFFPLFNAIFTFPQERPMLIKERSSGIYRLSSYYIARTVGDLPMELILP 519

Query: 536 TIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTML 595
           TIF+T+ YWMGGLKPSL TF++TL I+L+NVLVAQ +GL LGAI+MD K+A  L+SV ML
Sbjct: 520 TIFVTITYWMGGLKPSLTTFIMTLMIVLYNVLVAQGVGLALGAILMDAKKAATLSSVLML 579

Query: 596 VFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAI 655
           VFL+AGGYYIQH+  FIAWLKY+SFSHYCYKLLVGVQY+ +EVY CGSGLHCSVM++  I
Sbjct: 580 VFLLAGGYYIQHIPGFIAWLKYVSFSHYCYKLLVGVQYTWDEVYECGSGLHCSVMDYEGI 639

Query: 656 KYLGVDNKLIDVAALTMMLVGYRLLAYVTLR 686
           K L + N + DV AL +ML+ YR+LAY+ LR
Sbjct: 640 KNLRIGNMMWDVLALAVMLLLYRVLAYLALR 670

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	691
TAIR|locus:2028656	648	ABCG14 "ATP-binding cassette G	0.865	0.922	0.556	6.8e-182
TAIR|locus:2144133	751	ABCG22 "ATP-binding cassette G	0.892	0.821	0.441	3.2e-136
TAIR|locus:2016089	662	ABCG25 "ATP-binding casette G2	0.894	0.933	0.442	2.3e-133
TAIR|locus:2090009	685	ABCG26 "ATP-binding cassette G	0.887	0.894	0.403	7e-125
DICTYBASE|DDB_G0269214	793	abcG1 "ABC transporter G famil	0.387	0.337	0.383	1.5e-68
UNIPROTKB|E1BDU6	665	ABCG1 "Uncharacterized protein	0.833	0.866	0.290	2.1e-68
FB|FBgn0020445	1017	E23 "Early gene at 23" [Drosop	0.348	0.236	0.369	3.7e-68
UNIPROTKB|J9P4X7	717	ABCG1 "Uncharacterized protein	0.797	0.768	0.298	7.2e-68
UNIPROTKB|F1PPV0	689	ABCG1 "Uncharacterized protein	0.814	0.817	0.294	9.2e-68
UNIPROTKB|E7ERE5	786	ABCG1 "ATP-binding cassette su	0.824	0.725	0.297	1.5e-67

TAIR|locus:2028656 ABCG14 "ATP-binding cassette G14" [Arabidopsis thaliana (taxid:3702)]

 Score = 1765 (626.4 bits), Expect = 6.8e-182, P = 6.8e-182
 Identities = 343/616 (55%), Positives = 435/616 (70%)

Query:    71 LRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLA 130
             L+ S++P+TLKFE+V Y + +  +   C     G    + +T+  LNG++GMV PGE LA
Sbjct:    44 LQMSMYPITLKFEEVVYKVKIEQTS-QCM----GSWKSKEKTI--LNGITGMVCPGEFLA 96

Query:   131 MLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLE 190
             MLGP                   FSGK+ YNG+ FS  +KR+TGFV QDDVLYPHLTV E
Sbjct:    97 MLGPSGSGKTTLLSALGGRLSKTFSGKVMYNGQPFSGCIKRRTGFVAQDDVLYPHLTVWE 156

Query:   191 TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQ 250
             TL + ALLRLP  LTR+EK E  + VI ELGL RC NS++GGPLFRGISGGE+KRVSIGQ
Sbjct:   157 TLFFTALLRLPSSLTRDEKAEHVDRVIAELGLNRCTNSMIGGPLFRGISGGEKKRVSIGQ 216

Query:   251 EMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310
             EML+NPS LLLDEPTSGLDSTTA RIV T++ LA GGRTV+TTIHQPSSR+Y MFDKVV+
Sbjct:   217 EMLINPSLLLLDEPTSGLDSTTAHRIVTTIKRLASGGRTVVTTIHQPSSRIYHMFDKVVL 276

Query:   311 LSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRL 370
             LSEGSPIY G A+  ++YF S+G+     + NPAD LLDLANGI PD +++         
Sbjct:   277 LSEGSPIYYGAASSAVEYFSSLGFSTSLTV-NPADLLLDLANGIPPDTQKETS------- 328

Query:   371 EHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNE-WTASWWEQF 429
                 +Q   K++L+S+Y+KN+   L AE+           K++ KN  +E W  +WW QF
Sbjct:   329 --EQEQKTVKETLVSAYEKNISTKLKAELCNAESHSYEYTKAAAKNLKSEQWCTTWWYQF 386

Query:   430 KVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLXXXXXXXXXX 489
              VLL+RG++ER+ ES++ LRIFQV+SV+ L GLLWWH+ +SHIQD+  LL          
Sbjct:   387 TVLLQRGVRERRFESFNKLRIFQVISVAFLGGLLWWHTPKSHIQDRTALLFFFSVFWGFY 446

Query:   490 PLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLK 549
             PL NA+F FPQE+ MLIKERSSGMYRLSSY+ AR VGDLP+EL LPT F+ + YWMGGLK
Sbjct:   447 PLYNAVFTFPQEKRMLIKERSSGMYRLSSYFMARNVGDLPLELALPTAFVFIIYWMGGLK 506

Query:   550 PXXXXXXXXXXXXXXNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMS 609
             P              +VLVAQ LGL  GA++M++KQAT LASVT LVFL+AGGYY+Q + 
Sbjct:   507 PDPTTFILSLLVVLYSVLVAQGLGLAFGALLMNIKQATTLASVTTLVFLIAGGYYVQQIP 566

Query:   610 PFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAA 669
             PFI WLKY+S+S+YCYKLL+G+QY+ ++ Y C  G+ C V +FPAIK +G++N  IDV  
Sbjct:   567 PFIVWLKYLSYSYYCYKLLLGIQYTDDDYYECSKGVWCRVGDFPAIKSMGLNNLWIDVFV 626

Query:   670 LTMMLVGYRLLAYVTL 685
             + +MLVGYRL+AY+ L
Sbjct:   627 MGVMLVGYRLMAYMAL 642

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

TAIR|locus:2144133 ABCG22 "ATP-binding cassette G22" [Arabidopsis thaliana (taxid:3702)]

 Score = 1334 (474.7 bits), Expect = 3.2e-136, P = 3.2e-136
 Identities = 293/663 (44%), Positives = 412/663 (62%)

Query:    37 AQPSVSANNVSPCSDDDGISVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLHTSKG 96
             A P    ++  P SDD+ I   I+      +F    E   P+ LKF DV Y + +     
Sbjct:   116 AMPPEEISDSKPFSDDEMIPEDIEAGKKKPKFQA--EPTLPIFLKFRDVTYKVVIKK--- 170

Query:    97 SCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSG 156
                 TS  E  K+     +L G+SG V PGE+LA++GP                    +G
Sbjct:   171 ---LTSSVE--KE-----ILTGISGSVNPGEVLALMGPSGSGKTTLLSLLAGRISQSSTG 220

Query:   157 -KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM 215
               +TYN + +S  LK K GFVTQDDVL+PHLTV ETL+YAA LRLPK LTRE+K ++A  
Sbjct:   221 GSVTYNDKPYSKYLKSKIGFVTQDDVLFPHLTVKETLTYAARLRLPKTLTREQKKQRALD 280

Query:   216 VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
             VI ELGL RC+++++GG   RG+SGGERKRVSIG E+++NPS LLLDEPTSGLDSTTA R
Sbjct:   281 VIQELGLERCQDTMIGGAFVRGVSGGERKRVSIGNEIIINPSLLLLDEPTSGLDSTTALR 340

Query:   276 IVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYV 335
              +  L  +A  G+TVITTIHQPSSRL+  FDK+++L  GS +Y G++++ +DYF SIG  
Sbjct:   341 TILMLHDIAEAGKTVITTIHQPSSRLFHRFDKLILLGRGSLLYFGKSSEALDYFSSIGCS 400

Query:   336 PGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNAT-KQS--LISSYKKNLH 392
             P    +NPA+FLLDLANG   D+    +L+   ++ +   +  T K S   +  Y    +
Sbjct:   401 P-LIAMNPAEFLLDLANGNINDISVPSELDDRVQVGNSGRETQTGKPSPAAVHEYLVEAY 459

Query:   393 PALMAEIQQN-VGDPI-----ASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYS 446
                +AE ++  + DP+     A  KS+R     +W   WWEQ+ +L  RGL+ER+HE +S
Sbjct:   460 ETRVAEQEKKKLLDPVPLDEEAKAKSTRLK--RQWGTCWWEQYCILFCRGLKERRHEYFS 517

Query:   447 YLRIFQVLSVSILSGLLWWHSD-RSH--IQDQVGLLXXXXXXXXXXPLNNAIFVFPQERA 503
             +LR+ QVLS +++ GLLWW SD R+   +QDQ GLL          P+  AIF FPQERA
Sbjct:   518 WLRVTQVLSTAVILGLLWWQSDIRTPMGLQDQAGLLFFIAVFWGFFPVFTAIFAFPQERA 577

Query:   504 MLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPXXXXXXXXXXXXX 563
             ML KER++ MYRLS+Y+ AR   DLP++ +LP++F+ V Y+M GL+              
Sbjct:   578 MLNKERAADMYRLSAYFLARTTSDLPLDFILPSLFLLVVYFMTGLRISPYPFFLSMLTVF 637

Query:   564 XNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHY 623
               ++ AQ LGL +GAI+MD+K+AT LASVT++ F++AGG++++ +  FI+W++Y+SF+++
Sbjct:   638 LCIIAAQGLGLAIGAILMDLKKATTLASVTVMTFMLAGGFFVKKVPVFISWIRYLSFNYH 697

Query:   624 CYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYV 683
              YKLL+ VQY    V               +I  + +DN L +VAAL +M+ GYRLLAY+
Sbjct:   698 TYKLLLKVQYQDFAV---------------SINGMRIDNGLTEVAALVVMIFGYRLLAYL 742

Query:   684 TLR 686
             +LR
Sbjct:   743 SLR 745

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0010148 "transpiration" evidence=IMP

TAIR|locus:2016089 ABCG25 "ATP-binding casette G25" [Arabidopsis thaliana (taxid:3702)]

 Score = 1307 (465.1 bits), Expect = 2.3e-133, P = 2.3e-133
 Identities = 290/655 (44%), Positives = 394/655 (60%)

Query:    56 SVQIQEPPLVIRFSILRESLHPVTLKFEDVAYSINLH-TSKGSCFATS----HGEPNKQT 110
             S ++ + P   R S+L  S  P+TLKF DV Y + +H  S  SC          +P+ +T
Sbjct:    17 SPRLSQDPREPR-SLLSSSCFPITLKFVDVCYRVKIHGMSNDSCNIKKLLGLKQKPSDET 75

Query:   111 RTV---SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXX-FSGKITYNGRQFS 166
             R+    ++L+GV+GM+ PGE +A+LGP                     +GKI  N  + +
Sbjct:    76 RSTEERTILSGVTGMISPGEFMAVLGPSGSGKSTLLNAVAGRLHGSNLTGKILINDGKIT 135

Query:   167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
                 ++TGFV QDD+LYPHLTV ETL + ALLRLP+ LTR+ K+  AE VI ELGLT+C 
Sbjct:   136 KQTLKRTGFVAQDDLLYPHLTVRETLVFVALLRLPRSLTRDVKLRAAESVISELGLTKCE 195

Query:   227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
             N+VVG    RGISGGERKRVSI  E+L+NPS L+LDEPTSGLD+T A R+V TL GLA G
Sbjct:   196 NTVVGNTFIRGISGGERKRVSIAHELLINPSLLVLDEPTSGLDATAALRLVQTLAGLAHG 255

Query:   287 -GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPAD 345
              G+TV+T+IHQPSSR+++MFD V++LSEG  ++ G+    M YF S+G+ P F + NPAD
Sbjct:   256 KGKTVVTSIHQPSSRVFQMFDTVLLLSEGKCLFVGKGRDAMAYFESVGFSPAFPM-NPAD 314

Query:   346 FLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQ-QNVG 404
             FLLDLANG+     Q D     G  E  +  N  +Q+L+++Y   L P +   I+  +  
Sbjct:   315 FLLDLANGVC----QTD-----GVTER-EKPNV-RQTLVTAYDTLLAPQVKTCIEVSHFP 363

Query:   405 DPIASGKSSRKNCDNEWT--ASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGL 462
                A    +R N     T  A+W+ Q  +LL R L+ER+HES+  LRIFQV++ SIL GL
Sbjct:   364 QDNARFVKTRVNGGGITTCIATWFSQLCILLHRLLKERRHESFDLLRIFQVVAASILCGL 423

Query:   463 LWWHSDRSHIQDQVGLLXXXXXXXXXXPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFA 522
             +WWHSD   + D++GLL          P  NA+F FPQERA+  +ER+SGMY LSSY+ A
Sbjct:   424 MWWHSDYRDVHDRLGLLFFISIFWGVLPSFNAVFTFPQERAIFTRERASGMYTLSSYFMA 483

Query:   523 RMVGDLPMELVLPTIFITVAYWMGGLKPXXXXXXXXXXXXXXNVLVAQSLGLLLGAIIMD 582
              ++G L MELVLP  F+T  YWM  L+P               VL +Q LGL LGA IMD
Sbjct:   484 HVLGSLSMELVLPASFLTFTYWMVYLRPGIVPFLLTLSVLLLYVLASQGLGLALGAAIMD 543

Query:   583 VKQATALASVTMLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANE----V 638
              K+A+ + +VTML F++ GGYY+  +   + W+KY+S + YCY+LLV +QY + E    +
Sbjct:   544 AKKASTIVTVTMLAFVLTGGYYVNKVPSGMVWMKYVSTTFYCYRLLVAIQYGSGEEILRM 603

Query:   639 YACGS----GLHCSVM---EFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLR 686
               C S    G   +      F   + +G       V  L +M  GYR+LAY+ LR
Sbjct:   604 LGCDSKGKQGASAATSAGCRFVEEEVIGDVGMWTSVGVLFLMFFGYRVLAYLALR 658

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0080168 "abscisic acid transport" evidence=IDA

TAIR|locus:2090009 ABCG26 "ATP-binding cassette G26" [Arabidopsis thaliana (taxid:3702)]

 Score = 1227 (437.0 bits), Expect = 7.0e-125, P = 7.0e-125
 Identities = 254/629 (40%), Positives = 371/629 (58%)

Query:    71 LRESLHPVTLKFEDVAYSI-NLHTSKGSCFAT------SHGEPNKQTRTVSVLNGVSGMV 123
             L ++  P+ LKFEDV Y + N H S  +   T      +H  P+       +L G++G  
Sbjct:    56 LEDAPLPIFLKFEDVEYKVRNSHASSANLVKTMVSKVVTHTNPDPDGYK-HILKGITGST 114

Query:   124 KPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLKRKTGFVTQDDVLY 183
              PGE+LA++GP                     GK+TYN   +S S+KR+ GFVTQDDVL 
Sbjct:   115 GPGEILALMGPSGSGKTTLLKIMGGRLTDNVKGKLTYNDIPYSPSVKRRIGFVTQDDVLL 174

Query:   184 PHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGER 243
             P LTV ETL++AA LRLP  +++E+K  + EM+I ELGL RCR + VGG   +GISGGER
Sbjct:   175 PQLTVEETLAFAAFLRLPSSMSKEQKYAKIEMIIKELGLERCRRTRVGGGFVKGISGGER 234

Query:   244 KRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR 303
             KR SI  E+LV+PS LLLDEPTSGLDST+A +++  L+G+A+ GRTVITTIHQPSSR++ 
Sbjct:   235 KRASIAYEILVDPSLLLLDEPTSGLDSTSATKLLHILQGVAKAGRTVITTIHQPSSRMFH 294

Query:   304 MFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQ 363
             MFDK++++SEG P + G+A + M+YF S+  +P    +NPA+FLLDLA G   D+   D+
Sbjct:   295 MFDKLLLISEGHPAFYGKARESMEYFSSLRILPEI-AMNPAEFLLDLATGQVSDISLPDE 353

Query:   364 LEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTA 423
             L    +    D +    + L   YK +L P    E  +N   P             +WT 
Sbjct:   354 L-LAAKTAQPDSEEVLLKYLKQRYKTDLEPKEKEENHRNRKAP--EHLQIAIQVKKDWTL 410

Query:   424 SWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSD---RSHIQDQVGLLX 480
             SWW+QF +L +R  +ER+ + +  LR+ Q L V+++ GLLWW S     +H++DQVGL+ 
Sbjct:   411 SWWDQFLILSRRTFRERRRDYFDKLRLVQSLGVAVVLGLLWWKSKTDTEAHLRDQVGLMF 470

Query:   481 XXXXXXXXXPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFIT 540
                       L  A++VFP E+  L+KER + MYRLS YY    + D+   ++ PT F+ 
Sbjct:   471 YICIFWTSSSLFGAVYVFPFEKIYLVKERKAEMYRLSVYYVCSTLCDMVAHVLYPTFFMI 530

Query:   541 VAYWMGGLKPXXXXXXXXXXXXXXNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMA 600
             + Y+M                     + +Q  G  LGA ++ +K+A  +AS+ +++FL+ 
Sbjct:   531 IVYFMAEFNRNIPCFLFTVLTILLIAITSQGAGEFLGASVLSIKRAGMIASLVLMLFLLT 590

Query:   601 GGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPA-IKYLG 659
             GGYY+QH+  F+ WLKY+SF HY ++LL+ VQYSA++++ CGS   C  ++  +    + 
Sbjct:   591 GGYYVQHIPKFMQWLKYLSFMHYGFRLLLKVQYSADQLFECGSKGGCRTLQSSSSFDTIN 650

Query:   660 VDNKLIDVAALTMMLVGYRLLAYVTLRMR 688
             ++  L ++  L  M  GYRL AY  LR +
Sbjct:   651 LNGGLQELWVLLAMAFGYRLCAYFCLRKK 679

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009555 "pollen development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0010584 "pollen exine formation" evidence=IMP

GO:0010152 "pollen maturation" evidence=IMP

DICTYBASE|DDB_G0269214 abcG1 "ABC transporter G family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 498 (180.4 bits), Expect = 1.5e-68, Sum P(2) = 1.5e-68
 Identities = 105/274 (38%), Positives = 165/274 (60%)

Query:   101 TSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITY 160
             T  G+  K ++   +L  ++G ++ G + A++GP                    SG +  
Sbjct:   126 TEKGKKKKISK--QILTNINGHIESGTIFAIMGPSGAGKTTLLDILAHRLNINGSGTMYL 183

Query:   161 NGRQFSSSL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
             NG +   ++ K+  G+VTQ D L P LTV ETL++ A L++P+ +  +EK+++ + +I E
Sbjct:   184 NGNKSDFNIFKKLCGYVTQSDSLMPSLTVRETLNFYAQLKMPRDVPLKEKLQRVQDIIDE 243

Query:   220 LGLTRCRNSVVGGP--LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
             +GL RC +++VG      RGISGGER+RV+I  E+L  PS +LLDEPTSGLD++T+  ++
Sbjct:   244 MGLNRCADTLVGTADNKIRGISGGERRRVTISIELLTGPSVILLDEPTSGLDASTSFYVM 303

Query:   278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPG 337
             + L+ LA+ GRT+I TIHQP S +Y MFD +++L +G+ IY G+A + ++YF + GY   
Sbjct:   304 SALKKLAKSGRTIICTIHQPRSNIYDMFDNLLLLGDGNTIYYGKANKALEYFNANGYHCS 363

Query:   338 FNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLE 371
                 NPADF LDL N    D    D  +++   E
Sbjct:   364 -EKTNPADFFLDLINTQVEDQADSDDDDYNDEEE 396

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=ISS

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA;ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BDU6 ABCG1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 178/613 (29%), Positives = 310/613 (50%)

Query:    88 SINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXX 147
             ++N+   K   ++ S G   ++    ++L G+SG    GEL+A++GP             
Sbjct:    73 AVNIEF-KDLSYSVSEGPWWRKKGYKTLLKGISGKFNSGELVAIMGPSGAGKSTLMNILA 131

Query:   148 XXXXXXFSGKITYNGRQFSSSLKRKTG-FVTQDDVLYPHLTVLETLSYAALLRLPKKLTR 206
                     G++  NG        RK   ++ QDD+L PHLTV E +  +A L+L +K   
Sbjct:   132 GYRETGMKGEVLINGLPRDLRCFRKVSCYIMQDDLLLPHLTVQEAMMVSAHLKLQEK--D 189

Query:   207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
             E + E  + ++  LGL  C N+  G      +SGG+RKR++I  E++ NP  +  DEPTS
Sbjct:   190 EGRREMVKEILTALGLLSCANTRTGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTS 244

Query:   267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
             GLDS +  ++V+ ++GLA+GGR++I TIHQPS++L+ +FD++ VLS+G  +Y G+ + ++
Sbjct:   245 GLDSASCFQVVSLMKGLAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVSNLV 304

Query:   327 DYFGSIGY-VPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLIS 385
              Y   +G   P ++  NPADF++++A+G     +  DQ   +GRL       A  +    
Sbjct:   305 PYLRDLGLNCPTYH--NPADFVMEVASG-----EYGDQ---NGRLVR-----AVWEGKCD 349

Query:   386 SYKKNLHPALMAEIQQNVGD-PIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHES 444
             S  +   P   AE+   +   P     +S + C + ++AS   QF +L KR       +S
Sbjct:   350 SDCRR-EPGGDAEVNPFIWHRPSEEDSTSMEGC-HSFSASCLTQFCILFKRTFLSIMRDS 407

Query:   445 Y-SYLRIFQVLSVSILSGLLWWH--SDRSHIQDQVGLLXXXXXXXXXXPLNNAIFVFPQE 501
               ++LRI   + + +L GLL+    ++   +    G L           L   +  FP E
Sbjct:   408 VLTHLRITSHIGIGLLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLE 467

Query:   502 RAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPXXXXXXXXXXX 561
              ++ ++E  +  Y L +YY A+ + D+P +++ P  + ++ YWM                
Sbjct:   468 MSVFLREHLNYWYSLKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAAL 527

Query:   562 XXXNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQH--MSPFIAWLKYIS 619
                  LVAQSLGLL+GA    ++ AT +  VT +  L+  G+++    +  ++ W+ Y+S
Sbjct:   528 GTMTSLVAQSLGLLIGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYVS 587

Query:   620 FSHYCYK-LLVGVQYSANEVYACGSGLHCSVMEFPAI-KYLGVDN-KL-IDVAALTMMLV 675
             +  Y ++ +++ +     E   C +   C   +  AI + L V+N KL +D   L +  +
Sbjct:   588 YVRYGFEGVILSIYGLDREDLHCNTNETCHFQKSEAILRELDVENAKLYLDFIVLGIFFI 647

Query:   676 GYRLLAYVTLRMR 688
               RL+AY+ LR +
Sbjct:   648 SLRLIAYLVLRYK 660

GO:0055099 "response to high density lipoprotein particle stimulus" evidence=IEA

GO:0055091 "phospholipid homeostasis" evidence=IEA

GO:0055037 "recycling endosome" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045542 "positive regulation of cholesterol biosynthetic process" evidence=IEA

GO:0043691 "reverse cholesterol transport" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042987 "amyloid precursor protein catabolic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042632 "cholesterol homeostasis" evidence=IEA

GO:0034437 "glycoprotein transporter activity" evidence=IEA

GO:0034436 "glycoprotein transport" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0034374 "low-density lipoprotein particle remodeling" evidence=IEA

GO:0034041 "sterol-transporting ATPase activity" evidence=IEA

GO:0033993 "response to lipid" evidence=IEA

GO:0033700 "phospholipid efflux" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0032367 "intracellular cholesterol transport" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0017127 "cholesterol transporter activity" evidence=IEA

GO:0010888 "negative regulation of lipid storage" evidence=IEA

GO:0010875 "positive regulation of cholesterol efflux" evidence=IEA

GO:0010872 "regulation of cholesterol esterification" evidence=IEA

GO:0009897 "external side of plasma membrane" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005548 "phospholipid transporter activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

FB|FBgn0020445 E23 "Early gene at 23" [Drosophila melanogaster (taxid:7227)]

 Score = 431 (156.8 bits), Expect = 3.7e-68, Sum P(2) = 3.7e-68
 Identities = 92/249 (36%), Positives = 146/249 (58%)

Query:   115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLKRKTG 174
             +L+ VSG V P E+LA++GP                    SG +  N    +   +R+ G
Sbjct:   367 ILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSGQRHID-SGSVFLNREPLTKKWRRRIG 425

Query:   175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
             +V Q+++ +P LT+ ET+ Y ALLRLP+ + R EK+ Q + ++  L L  C+ +  G  L
Sbjct:   426 YVLQEEIFFPQLTLRETVVYTALLRLPESMPRAEKMRQVDHILEALELGCCQQTKFGDYL 485

Query:   235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITT 293
              RG+SGGE+KR +I  E+L NP  +LLDEPTSGLDS +A  ++  L+  A+   +T++ +
Sbjct:   486 NRGLSGGEKKRANIACELLTNPLLMLLDEPTSGLDSHSAISLMKVLKRYAQLEQKTIVIS 545

Query:   294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYV--PGFNLLNPADFLLDLA 351
             +HQPSS+++ MFDK+++L +G   Y G    +  +F  IG    P +N   PADF+L+  
Sbjct:   546 VHQPSSQMFHMFDKLLLLHQGRTAYFGDVQNIYRHFEDIGVTIKPHYN---PADFVLEQL 602

Query:   352 NGIAPDVKQ 360
                 PD+++
Sbjct:   603 KS-HPDIRE 610

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS;NAS

GO:0043190 "ATP-binding cassette (ABC) transporter complex" evidence=NAS

GO:0005215 "transporter activity" evidence=NAS

GO:0016020 "membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042752 "regulation of circadian rhythm" evidence=IDA;IMP

UNIPROTKB|J9P4X7 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
 Identities = 175/587 (29%), Positives = 296/587 (50%)

Query:   114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLKRKT 173
             ++L G+SG    GEL+A++GP                     G +  NG        RK 
Sbjct:   150 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRKV 209

Query:   174 G-FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
               ++ QDD+L PHLTV E +  +A L+L +K   E + E  + ++  LGL  C N+  G 
Sbjct:   210 SCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK--DEGRREMVKEILTALGLLSCANTRTGS 267

Query:   233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
                  +SGG+RKR++I  E++ NP  +  DEPTSGLDS +  ++V+ ++GLA+GGR++I 
Sbjct:   268 -----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIIC 322

Query:   293 TIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGY-VPGFNLLNPADFLLDLA 351
             TIHQPS++L+ +FD++ VLS+G  +Y G+ + ++ Y   +G   P ++  NPADF++++A
Sbjct:   323 TIHQPSAKLFELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYH--NPADFVMEVA 380

Query:   352 NGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVGD-PIASG 410
             +G     +  DQ   + RL       A ++ +  S  +   P   AE+   +   P    
Sbjct:   381 SG-----EYGDQ---NSRLVR-----AVREGMCDSEHRR-EPGGDAEVNPFLWHRPSEED 426

Query:   411 KSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESY-SYLRIFQVLSVSILSGLLWWH--S 467
              +S + C + ++AS   QF +L KR       +S  ++LRI   + + +L GLL+    +
Sbjct:   427 STSMEGC-HSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGN 485

Query:   468 DRSHIQDQVGLLXXXXXXXXXXPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGD 527
             +   +    G L           L   +  FP E  + ++E  +  Y L +YY A+ + D
Sbjct:   486 EAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMAD 545

Query:   528 LPMELVLPTIFITVAYWMGGLKPXXXXXXXXXXXXXXNVLVAQSLGLLLGAIIMDVKQAT 587
             +P +++ P  + ++ YWM                     LVAQSLGLL+GA    ++ AT
Sbjct:   546 VPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVAT 605

Query:   588 ALASVTMLVFLMAGGYYIQH--MSPFIAWLKYISFSHYCYK-LLVGVQYSANEVYACGSG 644
              +  VT +  L+  G+++    +  ++ W+ YIS+  Y ++ +++ +     E   CG  
Sbjct:   606 FVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCGID 665

Query:   645 LHCSVMEFPAI-KYLGV-DNKL-IDVAALTMMLVGYRLLAYVTLRMR 688
               C   +  AI + L V D KL +D   L +  +  RL+AY  LR +
Sbjct:   666 ETCHFQKSEAILRELDVEDAKLYLDFIVLGIFFISLRLIAYFVLRYK 712

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|F1PPV0 ABCG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
 Identities = 173/587 (29%), Positives = 295/587 (50%)

Query:   114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLKRKT 173
             ++L G+SG    GEL+A++GP                     G +  NG        RK 
Sbjct:   110 TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGLPRDLRCFRKV 169

Query:   174 G-FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
               ++ QDD+L PHLTV E +  +A L+L +K   E + E  + ++  LGL  C N+  G 
Sbjct:   170 SCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK--DEGRREMVKEILTALGLLSCANTRTGS 227

Query:   233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
                  +SGG+RKR++I  E++ NP  +  DEPTSGLDS +  ++V+ ++GLA+GGR++I 
Sbjct:   228 -----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKGLAQGGRSIIC 282

Query:   293 TIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGY-VPGFNLLNPADFLLDLA 351
             TIHQPS++L+ +FD++ VLS+G  +Y G+ + ++ Y   +G   P ++  NPADF++++A
Sbjct:   283 TIHQPSAKLFELFDQLYVLSQGQCVYRGKVSNLVPYLRDLGLNCPTYH--NPADFVMEVA 340

Query:   352 NGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVG-DPIASG 410
             +G   D  Q+ +L    R    D ++  +    +     L      E++Q      +   
Sbjct:   341 SGEYGD--QNSRLVRAVREGMCDSEHRREPGGDAEVNPFLWHRPSEEVKQTKRLQGLRKD 398

Query:   411 KSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESY-SYLRIFQVLSVSILSGLLWWH--S 467
              +S + C + ++AS   QF +L KR       +S  ++LRI   + + +L GLL+    +
Sbjct:   399 STSMEGC-HSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIGLLIGLLYLGIGN 457

Query:   468 DRSHIQDQVGLLXXXXXXXXXXPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGD 527
             +   +    G L           L   +  FP E  + ++E  +  Y L +YY A+ + D
Sbjct:   458 EAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYSLKAYYLAKTMAD 517

Query:   528 LPMELVLPTIFITVAYWMGGLKPXXXXXXXXXXXXXXNVLVAQSLGLLLGAIIMDVKQAT 587
             +P +++ P  + ++ YWM                     LVAQSLGLL+GA    ++ AT
Sbjct:   518 VPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLLIGAASTSLQVAT 577

Query:   588 ALASVTMLVFLMAGGYYIQH--MSPFIAWLKYISFSHYCYK-LLVGVQYSANEVYACGSG 644
              +  VT +  L+  G+++    +  ++ W+ YIS+  Y ++ +++ +     E   CG  
Sbjct:   578 FVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIYGLDREDLHCGID 637

Query:   645 LHCSVMEFPAI-KYLGV-DNKL-IDVAALTMMLVGYRLLAYVTLRMR 688
               C   +  AI + L V D KL +D   L +  +  RL+AY  LR +
Sbjct:   638 ETCHFQKSEAILRELDVEDAKLYLDFIVLGIFFISLRLIAYFVLRYK 684

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E7ERE5 ABCG1 "ATP-binding cassette sub-family G member 1" [Homo sapiens (taxid:9606)]

 Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
 Identities = 178/599 (29%), Positives = 301/599 (50%)

Query:   104 GEPNKQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR 163
             G+P ++    ++L G+SG    GEL+A++GP                     G +  NG 
Sbjct:   198 GDPMEEGYK-TLLKGISGKFNSGELVAIMGPSGAGKSTLMNILAGYRETGMKGAVLINGL 256

Query:   164 QFSSSLKRKTG-FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
                    RK   ++ QDD+L PHLTV E +  +A L+L +K   E + E  + ++  LGL
Sbjct:   257 PRDLRCFRKVSCYIMQDDMLLPHLTVQEAMMVSAHLKLQEK--DEGRREMVKEILTALGL 314

Query:   223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
               C N+  G      +SGG+RKR++I  E++ NP  +  DEPTSGLDS +  ++V+ ++G
Sbjct:   315 LSCANTRTGS-----LSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKG 369

Query:   283 LARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGY-VPGFNLL 341
             LA+GGR++I TIHQPS++L+ +FD++ VLS+G  +Y G+   ++ Y   +G   P ++  
Sbjct:   370 LAQGGRSIICTIHQPSAKLFELFDQLYVLSQGQCVYRGKVCNLVPYLRDLGLNCPTYH-- 427

Query:   342 NPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKN--LHPALMAEI 399
             NPADF++++A+G   D  Q+ +L    R    D  +  K+ L    + N  L      E+
Sbjct:   428 NPADFVMEVASGEYGD--QNSRLVRAVREGMCDSDH--KRDLGGDAEVNPFLWHRPSEEV 483

Query:   400 QQNVG-DPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESY-SYLRIFQVLSVS 457
             +Q      +    SS + C + ++AS   QF +L KR       +S  ++LRI   + + 
Sbjct:   484 KQTKRLKGLRKDSSSMEGC-HSFSASCLTQFCILFKRTFLSIMRDSVLTHLRITSHIGIG 542

Query:   458 ILSGLLWWH--SDRSHIQDQVGLLXXXXXXXXXXPLNNAIFVFPQERAMLIKERSSGMYR 515
             +L GLL+    ++   +    G L           L   +  FP E  + ++E  +  Y 
Sbjct:   543 LLIGLLYLGIGNEAKKVLSNSGFLFFSMLFLMFAALMPTVLTFPLEMGVFLREHLNYWYS 602

Query:   516 LSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPXXXXXXXXXXXXXXNVLVAQSLGLL 575
             L +YY A+ + D+P +++ P  + ++ YWM                     LVAQSLGLL
Sbjct:   603 LKAYYLAKTMADVPFQIMFPVAYCSIVYWMTSQPSDAVRFVLFAALGTMTSLVAQSLGLL 662

Query:   576 LGAIIMDVKQATALASVTMLVFLMAGGYYIQH--MSPFIAWLKYISFSHYCYK-LLVGVQ 632
             +GA    ++ AT +  VT +  L+  G+++    +  ++ W+ YIS+  Y ++ +++ + 
Sbjct:   663 IGAASTSLQVATFVGPVTAIPVLLFSGFFVSFDTIPTYLQWMSYISYVRYGFEGVILSIY 722

Query:   633 YSANEVYACGSGLHCSVMEFPAI-KYLGVDN-KL-IDVAALTMMLVGYRLLAYVTLRMR 688
                 E   C     C   +  AI + L V+N KL +D   L +  +  RL+AY  LR +
Sbjct:   723 GLDREDLHCDIDETCHFQKSEAILRELDVENAKLYLDFIVLGIFFISLRLIAYFVLRYK 781

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XA72	AB21G_ARATH	No assigned EC number	0.6671	0.9623	0.9895	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	691
PLN03211	659	PLN03211, PLN03211, ABC transporter G-25; Provisio	0.0
TIGR00955	617	TIGR00955, 3a01204, The Eye Pigment Precursor Tran	1e-140
cd03234	226	cd03234, ABCG_White, White pigment protein homolog	4e-79
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	5e-76
cd03213	194	cd03213, ABCG_EPDR, Eye pigment and drug resistanc	2e-74
TIGR00956	1394	TIGR00956, 3a01205, Pleiotropic Drug Resistance (P	2e-69
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	4e-59
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	5e-59
cd03232	192	cd03232, ABCG_PDR_domain2, Second domain of the pl	9e-52
cd03233	202	cd03233, ABCG_PDR_domain1, First domain of the ple	7e-49
PLN03140	1470	PLN03140, PLN03140, ABC transporter G family membe	7e-45
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	2e-40
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	4e-39
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	4e-37
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	1e-36
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	6e-36
COG1136	226	COG1136, SalX, ABC-type antimicrobial peptide tran	7e-36
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	8e-34
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	8e-34
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	9e-34
cd03297	214	cd03297, ABC_ModC_molybdenum_transporter, ATP-bind	1e-33
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	2e-33
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	3e-33
cd03253	236	cd03253, ABCC_ATM1_transporter, ATP-binding casset	3e-32
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	4e-32
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	6e-32
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	7e-32
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	9e-32
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	1e-31
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-31
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	3e-31
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	9e-31
cd03228	171	cd03228, ABCC_MRP_Like, ATP-binding cassette domai	2e-30
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	3e-30
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	4e-30
cd03261	235	cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca	5e-30
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	6e-30
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	6e-30
cd03251	234	cd03251, ABCC_MsbA, ATP-binding cassette domain of	6e-30
PRK11264	250	PRK11264, PRK11264, putative amino-acid ABC transp	8e-30
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	2e-29
TIGR00968	237	TIGR00968, 3a0106s01, sulfate ABC transporter, ATP	2e-29
COG1127	263	COG1127, Ttg2A, ABC-type transport system involved	5e-29
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	6e-29
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	8e-29
cd03299	235	cd03299, ABC_ModC_like, ATP-binding cassette domai	1e-28
TIGR02211	221	TIGR02211, LolD_lipo_ex, lipoprotein releasing sys	2e-28
TIGR03608	206	TIGR03608, L_ocin_972_ABC, putative bacteriocin ex	2e-28
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	2e-28
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	2e-28
TIGR03265	353	TIGR03265, PhnT2, putative 2-aminoethylphosphonate	4e-28
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	4e-28
TIGR02982	220	TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi	7e-28
cd03296	239	cd03296, ABC_CysA_sulfate_importer, ATP-binding ca	8e-28
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	9e-28
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	2e-27
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	3e-27
cd03254	229	cd03254, ABCC_Glucan_exporter_like, ATP-binding ca	4e-27
COG4555	245	COG4555, NatA, ABC-type Na+ transport system, ATPa	7e-27
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-26
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	2e-26
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	2e-26
COG4559	259	COG4559, COG4559, ABC-type hemin transport system,	3e-26
cd03249	238	cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett	3e-26
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	3e-26
COG4148	352	COG4148, ModC, ABC-type molybdate transport system	3e-26
COG4988	559	COG4988, CydD, ABC-type transport system involved	6e-26
COG1123	539	COG1123, COG1123, ATPase components of various ABC	9e-26
COG1123	539	COG1123, COG1123, ATPase components of various ABC	1e-25
cd03292	214	cd03292, ABC_FtsE_transporter, ATP-binding cassett	1e-25
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	1e-25
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-25
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	1e-25
TIGR02142	354	TIGR02142, modC_ABC, molybdenum ABC transporter, A	2e-25
COG1132	567	COG1132, MdlB, ABC-type multidrug transport system	2e-25
TIGR02673	214	TIGR02673, FtsE, cell division ATP-binding protein	3e-25
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	3e-25
COG4987	573	COG4987, CydC, ABC-type transport system involved	3e-25
TIGR03258	362	TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans	4e-25
COG4181	228	COG4181, COG4181, Predicted ABC-type transport sys	5e-25
COG2274	709	COG2274, SunT, ABC-type bacteriocin/lantibiotic ex	8e-25
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	1e-24
COG2884	223	COG2884, FtsE, Predicted ATPase involved in cell d	1e-24
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	2e-24
cd03226	205	cd03226, ABC_cobalt_CbiO_domain2, Second domain of	3e-24
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	3e-24
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	6e-24
TIGR03375	694	TIGR03375, type_I_sec_LssB, type I secretion syste	6e-24
COG0396	251	COG0396, sufC, Cysteine desulfurase activator ATPa	3e-23
cd03252	237	cd03252, ABCC_Hemolysin, ATP-binding cassette doma	4e-23
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	4e-23
COG1125	309	COG1125, OpuBA, ABC-type proline/glycine betaine t	5e-23
cd03245	220	cd03245, ABCC_bacteriocin_exporters, ATP-binding c	7e-23
COG4136	213	COG4136, COG4136, ABC-type uncharacterized transpo	8e-23
COG4598	256	COG4598, HisP, ABC-type histidine transport system	1e-22
PRK11124	242	PRK11124, artP, arginine transporter ATP-binding s	1e-22
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	2e-22
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	2e-22
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	2e-22
COG5265	497	COG5265, ATM1, ABC-type transport system involved	2e-22
cd03246	173	cd03246, ABCC_Protease_Secretion, ATP-binding cass	3e-22
COG1119	257	COG1119, ModF, ABC-type molybdenum transport syste	3e-22
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	8e-22
PRK13639	275	PRK13639, cbiO, cobalt transporter ATP-binding sub	8e-22
cd03244	221	cd03244, ABCC_MRP_domain2, ATP-binding cassette do	1e-21
COG4161	242	COG4161, ArtP, ABC-type arginine transport system,	1e-21
COG4604	252	COG4604, CeuD, ABC-type enterochelin transport sys	2e-21
PRK11629	233	PRK11629, lolD, lipoprotein transporter ATP-bindin	3e-21
COG3840	231	COG3840, ThiQ, ABC-type thiamine transport system,	3e-21
TIGR02868	530	TIGR02868, CydC, thiol reductant ABC exporter, Cyd	4e-21
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	4e-21
PRK11160	574	PRK11160, PRK11160, cysteine/glutathione ABC trans	5e-21
PRK09536	402	PRK09536, btuD, corrinoid ABC transporter ATPase;	5e-21
COG0444	316	COG0444, DppD, ABC-type dipeptide/oligopeptide/nic	6e-21
PRK10851	353	PRK10851, PRK10851, sulfate/thiosulfate transporte	7e-21
PRK13539	207	PRK13539, PRK13539, cytochrome c biogenesis protei	8e-21
cd03298	211	cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin	9e-21
PRK10584	228	PRK10584, PRK10584, putative ABC transporter ATP-b	1e-20
PRK11000	369	PRK11000, PRK11000, maltose/maltodextrin transport	1e-20
TIGR01277	213	TIGR01277, thiQ, thiamine ABC transporter, ATP-bin	1e-20
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	2e-20
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	2e-20
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	2e-20
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-20
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	3e-20
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	3e-20
cd03247	178	cd03247, ABCC_cytochrome_bd, ATP-binding cassette	3e-20
PRK09984	262	PRK09984, PRK09984, phosphonate/organophosphate es	5e-20
pfam00005	119	pfam00005, ABC_tran, ABC transporter	5e-20
PRK09493	240	PRK09493, glnQ, glutamine ABC transporter ATP-bind	2e-19
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-19
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	3e-19
PRK11231	255	PRK11231, fecE, iron-dicitrate transporter ATP-bin	3e-19
TIGR01186	363	TIGR01186, proV, glycine betaine/L-proline transpo	3e-19
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	3e-19
TIGR03797	686	TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste	6e-19
PRK14239	252	PRK14239, PRK14239, phosphate transporter ATP-bind	6e-19
TIGR02324	224	TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys	7e-19
TIGR02203	571	TIGR02203, MsbA_lipidA, lipid A export permease/AT	7e-19
TIGR01193	708	TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t	8e-19
PRK10535	648	PRK10535, PRK10535, macrolide transporter ATP-bind	8e-19
PRK09452	375	PRK09452, potA, putrescine/spermidine ABC transpor	9e-19
TIGR03873	256	TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra	9e-19
PRK11248	255	PRK11248, tauB, taurine transporter ATP-binding su	1e-18
cd03217	200	cd03217, ABC_FeS_Assembly, ABC-type transport syst	2e-18
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	2e-18
TIGR01187	325	TIGR01187, potA, spermidine/putrescine ABC transpo	2e-18
TIGR01978	243	TIGR01978, sufC, FeS assembly ATPase SufC	2e-18
TIGR01189	198	TIGR01189, ccmA, heme ABC exporter, ATP-binding pr	3e-18
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	3e-18
TIGR01842	544	TIGR01842, type_I_sec_PrtD, type I secretion syste	3e-18
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	3e-18
cd03250	204	cd03250, ABCC_MRP_domain1, ATP-binding cassette do	3e-18
PRK13657	588	PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra	3e-18
COG4618	580	COG4618, ArpD, ABC-type protease/lipase transport	3e-18
TIGR00972	247	TIGR00972, 3a0107s01c2, phosphate ABC transporter,	4e-18
TIGR02204	576	TIGR02204, MsbA_rel, ABC transporter, permease/ATP	4e-18
TIGR01846	694	TIGR01846, type_I_sec_HlyB, type I secretion syste	5e-18
TIGR01288	303	TIGR01288, nodI, ATP-binding ABC transporter famil	9e-18
COG4138	248	COG4138, BtuD, ABC-type cobalamin transport system	1e-17
cd03294	269	cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette	1e-17
TIGR03005	252	TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB	2e-17
COG4619	223	COG4619, COG4619, ABC-type uncharacterized transpo	2e-17
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	2e-17
PRK14262	250	PRK14262, PRK14262, phosphate ABC transporter ATP-	3e-17
cd03231	201	cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog	3e-17
PRK14272	252	PRK14272, PRK14272, phosphate ABC transporter ATP-	4e-17
PRK10619	257	PRK10619, PRK10619, histidine/lysine/arginine/orni	5e-17
PRK11650	356	PRK11650, ugpC, glycerol-3-phosphate transporter A	5e-17
TIGR00958	711	TIGR00958, 3a01208, Conjugate Transporter-2 (CT2)	7e-17
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	8e-17
PRK14271	276	PRK14271, PRK14271, phosphate ABC transporter ATP-	9e-17
cd03215	182	cd03215, ABC_Carb_Monos_II, Second domain of the A	1e-16
PRK14250	241	PRK14250, PRK14250, phosphate ABC transporter ATP-	1e-16
PRK14246	257	PRK14246, PRK14246, phosphate ABC transporter ATP-	1e-16
PRK13652	277	PRK13652, cbiO, cobalt transporter ATP-binding sub	1e-16
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-16
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	2e-16
PRK11144	352	PRK11144, modC, molybdate transporter ATP-binding	2e-16
TIGR01184	230	TIGR01184, ntrCD, nitrate transport ATP-binding su	2e-16
TIGR02323	253	TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys	2e-16
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	2e-16
COG4107	258	COG4107, PhnK, ABC-type phosphonate transport syst	2e-16
TIGR03796	710	TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste	3e-16
COG4175	386	COG4175, ProV, ABC-type proline/glycine betaine tr	3e-16
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	5e-16
PRK11614	237	PRK11614, livF, leucine/isoleucine/valine transpor	6e-16
COG4778	235	COG4778, PhnL, ABC-type phosphonate transport syst	6e-16
PRK13637	287	PRK13637, cbiO, cobalt transporter ATP-binding sub	6e-16
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	8e-16
PRK11174	588	PRK11174, PRK11174, cysteine/glutathione ABC trans	9e-16
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	1e-15
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	1e-15
TIGR02314	343	TIGR02314, ABC_MetN, D-methionine ABC transporter,	1e-15
PRK11701	258	PRK11701, phnK, phosphonate C-P lyase system prote	2e-15
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	2e-15
PRK10771	232	PRK10771, thiQ, thiamine transporter ATP-binding s	2e-15
PRK09580	248	PRK09580, sufC, cysteine desulfurase ATPase compon	2e-15
COG1117	253	COG1117, PstB, ABC-type phosphate transport system	2e-15
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-15
COG1134	249	COG1134, TagH, ABC-type polysaccharide/polyol phos	3e-15
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	3e-15
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	3e-15
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	4e-15
PRK13547	272	PRK13547, hmuV, hemin importer ATP-binding subunit	4e-15
PRK10575	265	PRK10575, PRK10575, iron-hydroxamate transporter A	4e-15
COG4172	534	COG4172, COG4172, ABC-type uncharacterized transpo	6e-15
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-14
COG4133	209	COG4133, CcmA, ABC-type transport system involved	1e-14
PRK15056	272	PRK15056, PRK15056, manganese/iron transporter ATP	1e-14
TIGR01192	585	TIGR01192, chvA, glucan exporter ATP-binding prote	1e-14
PRK14251	251	PRK14251, PRK14251, phosphate ABC transporter ATP-	2e-14
PRK14267	253	PRK14267, PRK14267, phosphate ABC transporter ATP-	2e-14
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	3e-14
PRK10070	400	PRK10070, PRK10070, glycine betaine transporter AT	3e-14
PRK13632	271	PRK13632, cbiO, cobalt transporter ATP-binding sub	5e-14
PRK10908	222	PRK10908, PRK10908, cell division protein FtsE; Pr	5e-14
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	6e-14
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	7e-14
PRK14247	250	PRK14247, PRK14247, phosphate ABC transporter ATP-	7e-14
PRK11432	351	PRK11432, fbpC, ferric transporter ATP-binding sub	8e-14
cd03248	226	cd03248, ABCC_TAP, ATP-binding cassette domain of	9e-14
PRK13635	279	PRK13635, cbiO, cobalt transporter ATP-binding sub	9e-14
PRK13631	320	PRK13631, cbiO, cobalt transporter ATP-binding sub	1e-13
PRK11176	582	PRK11176, PRK11176, lipid transporter ATP-binding/	1e-13
PRK10789	569	PRK10789, PRK10789, putative multidrug transporter	1e-13
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	1e-13
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	2e-13
CHL00131	252	CHL00131, ycf16, sulfate ABC transporter protein;	2e-13
PRK11308	327	PRK11308, dppF, dipeptide transporter ATP-binding	2e-13
TIGR02769	265	TIGR02769, nickel_nikE, nickel import ATP-binding	3e-13
PRK13538	204	PRK13538, PRK13538, cytochrome c biogenesis protei	3e-13
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	4e-13
PRK13641	287	PRK13641, cbiO, cobalt transporter ATP-binding sub	9e-13
TIGR02633	500	TIGR02633, xylG, D-xylose ABC transporter, ATP-bin	1e-12
PRK13644	274	PRK13644, cbiO, cobalt transporter ATP-binding sub	1e-12
PRK14255	252	PRK14255, PRK14255, phosphate ABC transporter ATP-	1e-12
PRK09473	330	PRK09473, oppD, oligopeptide transporter ATP-bindi	1e-12
PRK14275	286	PRK14275, PRK14275, phosphate ABC transporter ATP-	2e-12
PRK14240	250	PRK14240, PRK14240, phosphate transporter ATP-bind	2e-12
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	3e-12
PRK14274	259	PRK14274, PRK14274, phosphate ABC transporter ATP-	3e-12
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	3e-12
cd03369	207	cd03369, ABCC_NFT1, ATP-binding cassette domain 2	4e-12
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	4e-12
PRK14260	259	PRK14260, PRK14260, phosphate ABC transporter ATP-	4e-12
PRK10247	225	PRK10247, PRK10247, putative ABC transporter ATP-b	5e-12
PRK14273	254	PRK14273, PRK14273, phosphate ABC transporter ATP-	8e-12
PRK14245	250	PRK14245, PRK14245, phosphate ABC transporter ATP-	1e-11
PRK13638	271	PRK13638, cbiO, cobalt transporter ATP-binding sub	1e-11
TIGR03415	382	TIGR03415, ABC_choXWV_ATP, choline ABC transporter	1e-11
PRK14242	253	PRK14242, PRK14242, phosphate transporter ATP-bind	1e-11
PRK10419	268	PRK10419, nikE, nickel transporter ATP-binding pro	1e-11
PRK13646	286	PRK13646, cbiO, cobalt transporter ATP-binding sub	1e-11
PRK13650	279	PRK13650, cbiO, cobalt transporter ATP-binding sub	1e-11
TIGR02770	230	TIGR02770, nickel_nikD, nickel import ATP-binding	2e-11
PRK14248	268	PRK14248, PRK14248, phosphate ABC transporter ATP-	3e-11
PRK13651	305	PRK13651, PRK13651, cobalt transporter ATP-binding	3e-11
PRK13543	214	PRK13543, PRK13543, cytochrome c biogenesis protei	3e-11
TIGR03269	520	TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc	4e-11
PRK13549	506	PRK13549, PRK13549, xylose transporter ATP-binding	4e-11
PRK13642	277	PRK13642, cbiO, cobalt transporter ATP-binding sub	4e-11
PRK10744	260	PRK10744, pstB, phosphate transporter ATP-binding	5e-11
COG4178	604	COG4178, COG4178, ABC-type uncharacterized transpo	5e-11
PRK14258	261	PRK14258, PRK14258, phosphate ABC transporter ATP-	7e-11
PRK14270	251	PRK14270, PRK14270, phosphate ABC transporter ATP-	7e-11
PRK13649	280	PRK13649, cbiO, cobalt transporter ATP-binding sub	8e-11
PRK14264	305	PRK14264, PRK14264, phosphate ABC transporter ATP-	1e-10
cd03223	166	cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset	1e-10
PRK13634	290	PRK13634, cbiO, cobalt transporter ATP-binding sub	1e-10
PRK14254	285	PRK14254, PRK14254, phosphate ABC transporter ATP-	1e-10
PRK14261	253	PRK14261, PRK14261, phosphate ABC transporter ATP-	1e-10
PRK14256	252	PRK14256, PRK14256, phosphate ABC transporter ATP-	2e-10
cd03291	282	cd03291, ABCC_CFTR1, ATP-binding cassette domain o	2e-10
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	3e-10
PRK14268	258	PRK14268, PRK14268, phosphate ABC transporter ATP-	5e-10
PRK09544	251	PRK09544, znuC, high-affinity zinc transporter ATP	5e-10
PRK11153	343	PRK11153, metN, DL-methionine transporter ATP-bind	6e-10
PRK10261	623	PRK10261, PRK10261, glutathione transporter ATP-bi	8e-10
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	8e-10
cd03288	257	cd03288, ABCC_SUR2, ATP-binding cassette domain 2	8e-10
PRK15064	530	PRK15064, PRK15064, ABC transporter ATP-binding pr	9e-10
cd03237	246	cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin	1e-09
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	1e-09
PRK14236	272	PRK14236, PRK14236, phosphate transporter ATP-bind	2e-09
PRK13640	282	PRK13640, cbiO, cobalt transporter ATP-binding sub	2e-09
PRK14269	246	PRK14269, PRK14269, phosphate ABC transporter ATP-	2e-09
PRK14241	258	PRK14241, PRK14241, phosphate transporter ATP-bind	3e-09
PRK14265	274	PRK14265, PRK14265, phosphate ABC transporter ATP-	3e-09
PRK13643	288	PRK13643, cbiO, cobalt transporter ATP-binding sub	3e-09
PRK10253	265	PRK10253, PRK10253, iron-enterobactin transporter	4e-09
PRK14253	249	PRK14253, PRK14253, phosphate ABC transporter ATP-	4e-09
PRK14238	271	PRK14238, PRK14238, phosphate transporter ATP-bind	9e-09
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	9e-09
PRK11831	269	PRK11831, PRK11831, putative ABC transporter ATP-b	1e-08
PRK14249	251	PRK14249, PRK14249, phosphate ABC transporter ATP-	1e-08
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	1e-08
PRK13633	280	PRK13633, PRK13633, cobalt transporter ATP-binding	1e-08
cd03236	255	cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin	2e-08
COG2401	593	COG2401, COG2401, ABC-type ATPase fused to a predi	2e-08
PRK14257	329	PRK14257, PRK14257, phosphate ABC transporter ATP-	2e-08
TIGR00957	1522	TIGR00957, MRP_assoc_pro, multi drug resistance-as	2e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	2e-08
PRK14244	251	PRK14244, PRK14244, phosphate ABC transporter ATP-	2e-08
PRK14237	267	PRK14237, PRK14237, phosphate transporter ATP-bind	3e-08
PRK14266	250	PRK14266, PRK14266, phosphate ABC transporter ATP-	3e-08
PRK14243	264	PRK14243, PRK14243, phosphate transporter ATP-bind	5e-08
PRK15134	529	PRK15134, PRK15134, microcin C ABC transporter ATP	6e-08
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	7e-08
PRK14259	269	PRK14259, PRK14259, phosphate ABC transporter ATP-	7e-08
COG1245	591	COG1245, COG1245, Predicted ATPase, RNase L inhibi	8e-08
PRK14252	265	PRK14252, PRK14252, phosphate ABC transporter ATP-	8e-08
PTZ00243	1560	PTZ00243, PTZ00243, ABC transporter; Provisional	1e-07
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	1e-07
PRK15079	331	PRK15079, PRK15079, oligopeptide ABC transporter A	1e-07
PRK13540	200	PRK13540, PRK13540, cytochrome c biogenesis protei	2e-07
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	2e-07
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-07
PRK14235	267	PRK14235, PRK14235, phosphate transporter ATP-bind	3e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	5e-07
cd03238	176	cd03238, ABC_UvrA, ATP-binding cassette domain of	6e-07
PRK11819	556	PRK11819, PRK11819, putative ABC transporter ATP-b	7e-07
PLN03130	1622	PLN03130, PLN03130, ABC transporter C family membe	7e-07
smart00382	148	smart00382, AAA, ATPases associated with a variety	8e-07
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	8e-07
PRK14263	261	PRK14263, PRK14263, phosphate ABC transporter ATP-	8e-07
cd03290	218	cd03290, ABCC_SUR1_N, ATP-binding cassette domain	8e-07
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	9e-07
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-06
PRK13409	590	PRK13409, PRK13409, putative ATPase RIL; Provision	1e-06
PRK13648	269	PRK13648, cbiO, cobalt transporter ATP-binding sub	1e-06
PRK13645	289	PRK13645, cbiO, cobalt transporter ATP-binding sub	1e-06
cd03227	162	cd03227, ABC_Class2, ATP-binding cassette domain o	1e-06
PRK15439	510	PRK15439, PRK15439, autoinducer 2 ABC transporter	2e-06
PRK11247	257	PRK11247, ssuB, aliphatic sulfonates transport ATP	2e-06
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	3e-06
TIGR03719	552	TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot	4e-06
PRK11022	326	PRK11022, dppD, dipeptide transporter ATP-binding	5e-06
PRK10790	592	PRK10790, PRK10790, putative multidrug transporter	6e-06
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	1e-05
PRK15112	267	PRK15112, PRK15112, antimicrobial peptide ABC syst	1e-05
TIGR01271	1490	TIGR01271, CFTR_protein, cystic fibrosis transmemb	2e-05
cd03221	144	cd03221, ABCF_EF-3, ATP-binding cassette domain of	2e-05
cd03289	275	cd03289, ABCC_CFTR2, ATP-binding cassette domain 2	2e-05
PTZ00265	1466	PTZ00265, PTZ00265, multidrug resistance protein (	3e-05
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	3e-05
PRK10982	491	PRK10982, PRK10982, galactose/methyl galaxtoside t	6e-05
PRK13546	264	PRK13546, PRK13546, teichoic acids export protein	7e-05
PRK10938	490	PRK10938, PRK10938, putative molybdenum transport	1e-04
PLN03232	1495	PLN03232, PLN03232, ABC transporter C family membe	1e-04
cd03222	177	cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett	1e-04
TIGR01194	555	TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo	1e-04
COG3910	233	COG3910, COG3910, Predicted ATPase [General functi	1e-04
cd03240	204	cd03240, ABC_Rad50, ATP-binding cassette domain of	2e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
PRK11147	635	PRK11147, PRK11147, ABC transporter ATPase compone	3e-04
PRK10636	638	PRK10636, PRK10636, putative ABC transporter ATP-b	4e-04
PLN03073	718	PLN03073, PLN03073, ABC transporter F family; Prov	0.001
pfam13304	256	pfam13304, AAA_21, AAA domain	0.001
PRK00635	1809	PRK00635, PRK00635, excinuclease ABC subunit A; Pr	0.002
PRK11288	501	PRK11288, araG, L-arabinose transporter ATP-bindin	0.003
pfam12679	263	pfam12679, ABC2_membrane_2, ABC-2 family transport	0.003
cd03271	261	cd03271, ABC_UvrA_II, ATP-binding cassette domain	0.003

>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional

 Score =  697 bits (1799), Expect = 0.0
 Identities = 325/639 (50%), Positives = 437/639 (68%), Gaps = 33/639 (5%)

Query: 69  SILRESLHPVTLKFEDVAYSINLH--TSKGSCFATSHGEPNK------QTRTVSVLNGVS 120
           S+L  S +P+TLKF DV Y +      +KGS      G   K      Q +  ++LNGV+
Sbjct: 29  SLLLSSCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVT 88

Query: 121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK-FSGKITYNGRQFSSSLKRKTGFVTQD 179
           GM  PGE+LA+LGPSGSGK+TLL ALAGR++G  F+G I  N R+ +  + ++TGFVTQD
Sbjct: 89  GMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148

Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239
           D+LYPHLTV ETL + +LLRLPK LT++EKI  AE VI ELGLT+C N+++G    RGIS
Sbjct: 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGIS 208

Query: 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS 299
           GGERKRVSI  EML+NPS L+LDEPTSGLD+T A R+V TL  LA+ G+T++T++HQPSS
Sbjct: 209 GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSS 268

Query: 300 RLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVK 359
           R+Y+MFD V+VLSEG  ++ G+ +  M YF S+G+ P F + NPADFLLDLANG+     
Sbjct: 269 RVYQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPM-NPADFLLDLANGVC---- 323

Query: 360 QDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMA--EIQQNVGDP---IASGKSS- 413
           Q D +          ++   KQSL++SY   L P + A  E+          + S  +  
Sbjct: 324 QTDGVS-------EREKPNVKQSLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKE 376

Query: 414 RKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSHIQ 473
            ++ D    ++W+ QF +LL+R L+ERKHES++ LR+FQV++ ++L+GL+WWHSD   +Q
Sbjct: 377 HRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFRDVQ 436

Query: 474 DQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELV 533
           D++GLLFF SIFWG FP  N++FVFPQERA+ +KER+SGMY LSSY+ AR+VGDLPMEL+
Sbjct: 437 DRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELI 496

Query: 534 LPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVT 593
           LPTIF+TV YWM GLKP L  FLLTL ++L  VLV+Q LGL LGA IMD K+A+ + +VT
Sbjct: 497 LPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVT 556

Query: 594 MLVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSANE----VYACG--SGLHC 647
           ML F++ GG+Y+  +   +AW+KYIS + Y Y+LL+ VQY   +    +  C    G   
Sbjct: 557 MLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDR 616

Query: 648 SVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLR 686
           +  +F      G  +    V+ L  M VGYRLLAY+ LR
Sbjct: 617 ASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLALR 655

Length = 659

>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein

 Score =  424 bits (1093), Expect = e-140
 Identities = 196/629 (31%), Positives = 320/629 (50%), Gaps = 37/629 (5%)

Query: 78  VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGS 137
            + +  DV   +    S     +   G   ++     +L  VSG+ KPGELLA++G SG+
Sbjct: 3   YSWRNSDVFGRVAQDGSWKQLVSRLRGCFCRERPRKHLLKNVSGVAKPGELLAVMGSSGA 62

Query: 138 GKTTLLTALAGRLRG--KFSGKITYNGRQFSSS-LKRKTGFVTQDDVLYPHLTVLETLSY 194
           GKTTL+ ALA R     K SG +  NG    +  ++  + +V QDD+  P LTV E L +
Sbjct: 63  GKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMF 122

Query: 195 AALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP-LFRGISGGERKRVSIGQEML 253
            A LR+P+++T++EK E+ + V+  LGL +C N+ +G P   +G+SGGERKR++   E+L
Sbjct: 123 QAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELL 182

Query: 254 VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313
            +P  L  DEPTSGLDS  A  +V  L+GLA+ G+T+I TIHQPSS L+ +FDK+++++E
Sbjct: 183 TDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAE 242

Query: 314 GSPIYSGRAAQVMDYFGSIGY-VPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEH 372
           G   Y G   Q + +F  +G+  P     NPADF + +   + P  + + +       + 
Sbjct: 243 GRVAYLGSPDQAVPFFSDLGHPCP--ENYNPADFYVQVL-AVIPGSENESRERIEKICDS 299

Query: 373 HDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVL 432
               +  +  L       ++  L +     +     + +    N      ASWW QF  L
Sbjct: 300 FAVSDIGRDML-------VNTNLWSGKAGGLVKDSENMEGIGYN------ASWWTQFYAL 346

Query: 433 LKRG-LQERKHESYSYLRIFQVLSVSILSGLLWWHSDRSH--IQDQVGLLFFFSIFWGFF 489
           LKR  L   +      +R+ Q +  +IL GL++     +   +Q+  G LF F     F 
Sbjct: 347 LKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQ 406

Query: 490 PLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLK 549
            +   I VF  E  + ++E  SG+YR+S+Y+ A+ + +LP+ ++LP +F ++ YWM GL+
Sbjct: 407 NVFPVINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLR 466

Query: 550 PSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMS 609
                FL  L ++     VA S G L+         A  +    ++ FL+ GG++I   S
Sbjct: 467 SGATHFLTFLFLVTLVANVATSFGYLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDS 526

Query: 610 --PFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSV-MEFPAIKYL-------G 659
              +  WL Y+S+  Y  + L+  Q+S  +   C      +     P+   +        
Sbjct: 527 IPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIEC---TSANTTGPCPSSGEVILETLSFR 583

Query: 660 VDNKLIDVAALTMMLVGYRLLAYVTLRMR 688
             +  +D+  L +++  +RLLAY  LR+R
Sbjct: 584 NADLYLDLIGLVILIFFFRLLAYFALRIR 612

[Transport and binding proteins, Other]. Length = 617

>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily

 Score =  251 bits (643), Expect = 4e-79
 Identities = 103/220 (46%), Positives = 145/220 (65%), Gaps = 7/220 (3%)

Query: 104 GEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--FSGKITYN 161
            +     +   +LN VS  V+ G+++A+LG SGSGKTTLL A++GR+ G    SG+I +N
Sbjct: 11  LKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFN 70

Query: 162 GRQFSSSL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL 220
           G+       ++   +V QDD+L P LTV ETL+Y A+LRLP+K +   + ++ E V    
Sbjct: 71  GQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV---- 126

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
            L     + +GG L +GISGGER+RVSI  ++L +P  L+LDEPTSGLDS TA  +V+TL
Sbjct: 127 LLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL 186

Query: 281 RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
             LAR  R VI TIHQP S L+R+FD++++LS G  +YSG
Sbjct: 187 SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226

The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  266 bits (681), Expect = 5e-76
 Identities = 154/550 (28%), Positives = 246/550 (44%), Gaps = 34/550 (6%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---KFSGKITYNG 162
             + T+T  +L  + G++KPGEL  +LG  GSG +TLL  +A    G      G ITY+G
Sbjct: 67  KFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG 126

Query: 163 RQFSSSLKRKTGFV---TQDDVLYPHLTVLETLSYAALLRLP----KKLTREEKIEQAEM 215
                  K   G V    + DV +PHLTV ETL +AA  + P      ++REE  +    
Sbjct: 127 ITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIAD 186

Query: 216 VIME-LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
           V M   GL+  RN+ VG    RG+SGGERKRVSI +  L        D  T GLDS TA 
Sbjct: 187 VYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATAL 246

Query: 275 RIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIG 333
             +  L+  A     T +  I+Q S   Y +FDKV+VL EG  IY G A +   YF  +G
Sbjct: 247 EFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMG 306

Query: 334 YV-PGFNLLNPADFLLDLANGIAPDVKQDDQ-------LEFHGR-LEHHDDQNATKQSLI 384
           +  P  +    ADFL  L +     +K   +        EF        +     K+  I
Sbjct: 307 FKCP--DRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKE--I 362

Query: 385 SSYKKNLHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHE- 443
             Y      +   E      +   + +S R    + +T S+  Q K  L R     K   
Sbjct: 363 DEYLDRCSESDTKEA---YRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNP 419

Query: 444 SYSYLRIFQVLSVSILSGLLWWH--SDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQE 501
           S++   +F  + ++++   ++++   + S    + G LFF  +F  F  L   I    + 
Sbjct: 420 SFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLE-IASMYEA 478

Query: 502 RAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSI 561
           R ++ K R   +Y  S+   A ++ ++P +++   +F  + Y+M   + +   F   L I
Sbjct: 479 RPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLI 538

Query: 562 ILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYIS 619
           +    L    L   +GA+   + +A   A++ +L   +  G+ I    M  +  W+ Y++
Sbjct: 539 LFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVN 598

Query: 620 FSHYCYKLLV 629
              Y ++ L+
Sbjct: 599 PLAYAFESLM 608

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily

 Score =  237 bits (608), Expect = 2e-74
 Identities = 104/246 (42%), Positives = 141/246 (57%), Gaps = 54/246 (21%)

Query: 77  PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSG 136
            VTL F ++  ++                P+K  + +  L  VSG  KPGEL A++GPSG
Sbjct: 1   GVTLSFRNLTVTV-------------KSSPSKSGKQL--LKNVSGKAKPGELTAIMGPSG 45

Query: 137 SGKTTLLTALAGRLRG-KFSGKITYNGRQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSY 194
           +GK+TLL ALAGR  G   SG++  NGR     S ++  G+V QDD+L+P LTV ETL +
Sbjct: 46  AGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMF 105

Query: 195 AALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV 254
           AA LR                                     G+SGGERKRVSI  E++ 
Sbjct: 106 AAKLR-------------------------------------GLSGGERKRVSIALELVS 128

Query: 255 NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           NPS L LDEPTSGLDS++A ++++ LR LA  GRT+I +IHQPSS ++ +FDK+++LS+G
Sbjct: 129 NPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQG 188

Query: 315 SPIYSG 320
             IY G
Sbjct: 189 RVIYFG 194

ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194

>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein

 Score =  246 bits (630), Expect = 2e-69
 Identities = 167/552 (30%), Positives = 265/552 (48%), Gaps = 56/552 (10%)

Query: 115  VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF--SGKITYNGRQFSSSLKRK 172
            +LN V G VKPG L A++G SG+GKTTLL  LA R+       G    NGR   SS +R 
Sbjct: 778  ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837

Query: 173  TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
             G+V Q D+  P  TV E+L ++A LR PK +++ EK+E  E VI  L +    ++VVG 
Sbjct: 838  IGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV 897

Query: 233  PLFRGISGGERKRVSIGQEMLVNPSCLL-LDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
            P   G++  +RKR++IG E++  P  LL LDEPTSGLDS TA  I   +R LA  G+ ++
Sbjct: 898  P-GEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAIL 956

Query: 292  TTIHQPSSRLYRMFDKVVVLSEGS-PIYSGRAAQ----VMDYFGSIGYVPGFNLLNPADF 346
             TIHQPS+ L+  FD++++L +G   +Y G   +    +++YF   G        NPA++
Sbjct: 957  CTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLGENSHTIINYFEKHGAPKCPEDANPAEW 1016

Query: 347  LLDLANGIAPD--VKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVG 404
            +L+   G AP     QD    +H   E        + S  S Y+     A+  E+ +   
Sbjct: 1017 MLE-VIGAAPGAHANQD----YH---EVW------RNS--SEYQ-----AVKNELDRLEA 1055

Query: 405  DPIASGKSSRKNCDN--EWTASWWEQFKVLLKRGLQER-KHESYSYLRIFQVLSVSILSG 461
            +   S      + D   ++ AS W QFK++L R  Q+  +   Y Y + F  +  ++  G
Sbjct: 1056 EL--SKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIG 1113

Query: 462  LLWWHSDRSH--IQDQVGLLFFFSIFWGFFPLNNAI---FVFPQERAMLIKERSSGMYRL 516
              ++    S   +Q+Q+  +F  ++   F PL       FV  Q     ++ER S  +  
Sbjct: 1114 FTFFKVGTSLQGLQNQMFAVFMATVL--FNPLIQQYLPPFV-AQRDLYEVRERPSRTFSW 1170

Query: 517  SSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLI--------TFLLTLSIILFNVLV 568
             ++  A++  ++P  LV  TIF  + Y+  G   +            L  L   +F +  
Sbjct: 1171 LAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYF 1230

Query: 569  AQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYI--QHMSPFIAWLKYISFSHYCYK 626
            + +LG ++ +   +   A  LAS+   + L   G       M  F  ++   S   Y  +
Sbjct: 1231 S-TLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQ 1289

Query: 627  LLVGVQYSANEV 638
             L+    +   V
Sbjct: 1290 ALLSTGLADVPV 1301

[Transport and binding proteins, Other]. Length = 1394

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  216 bits (551), Expect = 4e-59
 Identities = 179/630 (28%), Positives = 311/630 (49%), Gaps = 69/630 (10%)

Query: 3    PPDHQQ-----ETSSCMTGNGPPAANTILSNRTDTVLVHAQPSVSANNVSPCSDDDGISV 57
            P   +Q     ET+  M G       ++ S   +     A   +S       + D  +  
Sbjct: 790  PLGKKQAIISEETAEEMEGEEDSIPRSLSSADGNNTREVAIQRMSNPEGLSKNRDSSLEA 849

Query: 58   QIQEPP---LVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVS 114
                 P   +V+ F+       P+ + F+DV Y +++             E       + 
Sbjct: 850  ANGVAPKRGMVLPFT-------PLAMSFDDVNYFVDM--------PAEMKEQGVTEDRLQ 894

Query: 115  VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF-SGKITYNG---RQFSSSLK 170
            +L  V+G  +PG L A++G SG+GKTTL+  LAGR  G +  G I  +G   +Q   +  
Sbjct: 895  LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQ--ETFA 952

Query: 171  RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
            R +G+  Q+D+  P +TV E+L Y+A LRLPK++++EEK+   + V+  + L   ++++V
Sbjct: 953  RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIV 1012

Query: 231  GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
            G P   G+S  +RKR++I  E++ NPS + +DEPTSGLD+  A  ++ T+R     GRTV
Sbjct: 1013 GLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTV 1072

Query: 291  ITTIHQPSSRLYRMFDKVVVLSEGSP-IYSGRAAQ----VMDYFGSIGYVPGF-NLLNPA 344
            + TIHQPS  ++  FD+++++  G   IYSG   +    +++YF +I  VP      NPA
Sbjct: 1073 VCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPA 1132

Query: 345  DFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMAEIQQNVG 404
             ++L+  + +A +VK    ++F    EH+      K S  S Y++N   AL+ E+  +  
Sbjct: 1133 TWMLE-VSSLAAEVKLG--IDF---AEHY------KSS--SLYQRN--KALVKEL--STP 1174

Query: 405  DPIASGKSSRKNCDNEWTASWWEQFK-VLLKRGLQERKHESYSYLRIFQVLSVSILSGLL 463
             P AS          +++ S W QFK  L K+     +   Y+ +R F  L+ +++ G +
Sbjct: 1175 PPGASDLY----FATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTI 1230

Query: 464  WWH--SDRSHIQDQ---VGLLFFFSIFWGFFPLNNAIFVFPQ---ERAMLIKERSSGMYR 515
            +W   + RS+  D    +G ++   +F G   +NN   V P    ER +  +ER++GMY 
Sbjct: 1231 FWKVGTKRSNANDLTMVIGAMYAAVLFVG---INNCSTVQPMVAVERTVFYRERAAGMYS 1287

Query: 516  LSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLL 575
               Y  A++V ++P  L+  T +  + Y M   + +   F     I  F+ L     G++
Sbjct: 1288 ALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMM 1347

Query: 576  LGAIIMDVKQATALASVTMLVFLMAGGYYI 605
              ++  + + A   A+    +F +  G++I
Sbjct: 1348 TVSLTPNQQVAAIFAAAFYGLFNLFSGFFI 1377

Length = 1470

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score =  200 bits (511), Expect = 5e-59
 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 14/225 (6%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF---SSSLKR 171
            L+GVS  V+PGE+  +LGP+G+GKTTLL  LAG L+   SG+I   G       + ++R
Sbjct: 20  ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEILVLGYDVVKEPAKVRR 78

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
           + G+V Q+  LYP LTV E L + A L    K   EE+IE+   ++   GL    N  V 
Sbjct: 79  RIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEE---LLELFGLEDKANKKV- 134

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTV 290
               R +SGG ++R+SI   +L +P  L+LDEPTSGLD  + + I   LR LA+ GG T+
Sbjct: 135 ----RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTI 190

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYV 335
           + + H        + D+V++L++G  I  G   ++ + FG  G +
Sbjct: 191 LLSTHILEE-AEELCDRVIILNDGKIIAEGTPEELKEKFGGKGVI 234

Length = 293

>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters

 Score =  177 bits (451), Expect = 9e-52
 Identities = 84/200 (42%), Positives = 112/200 (56%), Gaps = 38/200 (19%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR-LRGKFSGKITYNGRQFSSSLKRKTG 174
           LN +SG VKPG L A++G SG+GKTTLL  LAGR   G  +G+I  NGR    + +R TG
Sbjct: 23  LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
           +V Q DV  P+LTV E L ++ALLR                                   
Sbjct: 83  YVEQQDVHSPNLTVREALRFSALLR----------------------------------- 107

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
             G+S  +RKR++IG E+   PS L LDEPTSGLDS  A  IV  L+ LA  G+ ++ TI
Sbjct: 108 --GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTI 165

Query: 295 HQPSSRLYRMFDKVVVLSEG 314
           HQPS+ ++  FD++++L  G
Sbjct: 166 HQPSASIFEKFDRLLLLKRG 185

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192

>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters

 Score =  169 bits (431), Expect = 7e-49
 Identities = 82/219 (37%), Positives = 113/219 (51%), Gaps = 37/219 (16%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL--RGKFSGKITYNG--- 162
           K    + +L   SG+VKPGE++ +LG  GSG +TLL ALA R        G I YNG   
Sbjct: 15  KGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPY 74

Query: 163 RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
           ++F+     +  +V+++DV +P LTV ETL +A                           
Sbjct: 75  KEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFAL-------------------------- 108

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
            RC+    G    RGISGGERKRVSI + ++   S L  D  T GLDS+TA  I+  +R 
Sbjct: 109 -RCK----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRT 163

Query: 283 LARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           +A     T   +++Q S  +Y +FDKV+VL EG  IY G
Sbjct: 164 MADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202

The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202

>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional

 Score =  173 bits (439), Expect = 7e-45
 Identities = 154/599 (25%), Positives = 279/599 (46%), Gaps = 107/599 (17%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSGKITYNGRQF 165
           K+T+ +++L   SG++KP  +  +LGP  SGKTTLL ALAG+L    K SG+ITYNG + 
Sbjct: 174 KKTK-LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRL 232

Query: 166 SSSLKRKT-GFVTQDDVLYPHLTVLETLSYAALLR-------LPKKLTREEK----IEQA 213
           +  + RKT  +++Q+DV    +TV ETL ++A  +       L  +L R EK      +A
Sbjct: 233 NEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEA 292

Query: 214 EM------VIME--------------LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML 253
           E+        ME              LGL  C++++VG  + RGISGG++KRV+ G EM+
Sbjct: 293 EVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTG-EMI 351

Query: 254 VNPS-CLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVL 311
           V P+  L +DE ++GLDS+T  +IV  L+ +      TV+ ++ QP+   + +FD +++L
Sbjct: 352 VGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILL 411

Query: 312 SEGSPIYSGRAAQVMDYFGSIGY-VPGFNLLNPADFLLDLANGIAPDVKQDDQL------ 364
           SEG  +Y G    ++++F S G+  P       ADFL ++ +      K+D +       
Sbjct: 412 SEGQIVYQGPRDHILEFFESCGFKCP--ERKGTADFLQEVTS------KKDQEQYWADRN 463

Query: 365 ---------EFHGRLEH-HDDQNATKQSLISSYKKNLHPALMAEIQQNVGDPIASGKSSR 414
                    EF  R +  H       +  +   K   H A +   + +V           
Sbjct: 464 KPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSV-----PKMELL 518

Query: 415 KNC-DNEWTASWWEQFKVLLKRGLQERKHESYSYL-RIFQVLSVSILSGLLWWHSDRSHI 472
           K C D EW         +L+KR        ++ Y+ +  Q++ V+ ++  ++  +   H 
Sbjct: 519 KACWDKEW---------LLMKR-------NAFVYVFKTVQIIIVAAIASTVFLRT-EMHT 561

Query: 473 QDQ------VGLLFF---FSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFAR 523
           +++      +G L F    ++F GF  L   I   P    +  K+R    +   ++    
Sbjct: 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQRLP----VFYKQRDLLFHPPWTFTLPT 617

Query: 524 MVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDV 583
            +  +P+ ++   +++ + Y+  G  P    F   L ++     +A  +  L+ ++   +
Sbjct: 618 FLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677

Query: 584 KQATALASVTMLVFLMAGGYYI--QHMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYA 640
             A    ++ +L+  + GG+ +    +  +  W  ++S   Y +  L       NE++A
Sbjct: 678 IIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALA-----VNEMFA 731

Length = 1470

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score =  146 bits (371), Expect = 2e-40
 Identities = 63/212 (29%), Positives = 110/212 (51%), Gaps = 7/212 (3%)

Query: 427 EQFKVLLKRGLQERKHESYSYL--RIFQVLSVSILSGLLWWHSDRS-HIQDQVGLLFFFS 483
            Q K LLKR    R  +    L  R+ Q L ++++ G ++ + D S    ++ GLLFF  
Sbjct: 1   TQLKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNLDTSLGGLNRPGLLFFSI 60

Query: 484 IFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAY 543
           +F  F  L     VF +ER +L +E +S +Y  S+Y  A+++ +LP+ L+   IF+ + Y
Sbjct: 61  LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120

Query: 544 WMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGY 603
           +M GL  S   F L L ++L   L A  LGL + A+    + A+ +  + +L  L+  G+
Sbjct: 121 FMVGLPVS--RFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178

Query: 604 YI--QHMSPFIAWLKYISFSHYCYKLLVGVQY 633
           +I    M  ++ W+ Y++   Y  + L   ++
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210

Length = 210

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score =  143 bits (363), Expect = 4e-39
 Identities = 72/203 (35%), Positives = 110/203 (54%), Gaps = 13/203 (6%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--LKRK 172
            L+ +S  V+PGE LA+LGPSG GKTTLL  +AG  R   SG+I  +GR  +     +R 
Sbjct: 15  ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPD-SGEILIDGRDVTGVPPERRN 73

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
            G V QD  L+PHLTV E +++   L+L + + + E   +   ++  +GL    N     
Sbjct: 74  IGMVFQDYALFPHLTVAENIAFG--LKL-RGVPKAEIRARVRELLELVGLEGLLNRYP-- 128

Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRTVI 291
                +SGG+++RV++ + +   PS LLLDEP S LD+   + +   L+ L    G T I
Sbjct: 129 ---HELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTI 185

Query: 292 TTIHQPSSRLYRMFDKVVVLSEG 314
              H     L  + D++ V++EG
Sbjct: 186 YVTHDQEEAL-ALADRIAVMNEG 207

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score =  137 bits (348), Expect = 4e-37
 Identities = 69/215 (32%), Positives = 110/215 (51%), Gaps = 23/215 (10%)

Query: 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS 168
                  L+ +S  +K GE + ++GP+GSGK+TLL  L G L G  SG++  +G+  +  
Sbjct: 10  PDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKL 68

Query: 169 ----LKRKTGFVTQDDVLYP-----HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
               L+RK G V Q+    P       TV E +++         L  EE  E+ E  +  
Sbjct: 69  SLKELRRKVGLVFQN----PDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALEL 121

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
           +GL   R+       F  +SGG+++RV+I   + ++P  LLLDEPT+GLD    + ++  
Sbjct: 122 VGLEGLRDR----SPFT-LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLEL 176

Query: 280 LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           L+ L   G+T+I   H     L  + D+V+VL +G
Sbjct: 177 LKKLKAEGKTIIIVTHDL-DLLLELADRVIVLEDG 210

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score =  136 bits (346), Expect = 1e-36
 Identities = 72/217 (33%), Positives = 113/217 (52%), Gaps = 20/217 (9%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
                 V  L GVS  ++ GE +A++GPSGSGK+TLL  L G  R   SG++  +G   S
Sbjct: 11  GGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR-PTSGEVRVDGTDIS 69

Query: 167 -------SSLKRKT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIM 218
                  ++ +R+  GFV Q   L P LT LE +    LL     + ++E+ E+AE ++ 
Sbjct: 70  KLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLE 126

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            +GL    N          +SGG+++RV+I + +  +P  +L DEPT  LDS T + ++ 
Sbjct: 127 RVGLGDRLNHYPSE-----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVME 181

Query: 279 TLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
            LR L +  G T++   H P   L    D+++ L +G
Sbjct: 182 LLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRDG 216

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score =  138 bits (349), Expect = 6e-36
 Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 30/243 (12%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL--K 170
             VL  V+  ++ GE + +LGPSG GK+TLL  +AG L    SG+I  +GR  +     K
Sbjct: 16  FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAG-LEEPTSGEILIDGRDVTDLPPEK 74

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG--LTRCRNS 228
           R    V Q+  LYPH+TV E +++   LR   K   ++++++    ++ L   L R    
Sbjct: 75  RGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAK-LLGLEHLLNRKP-- 131

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGG 287
                    +SGG+R+RV++ + ++  P   LLDEP S LD+     + + ++ L  R G
Sbjct: 132 -------LQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLG 184

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQ---------VMDYFGSIGYVPGF 338
            T I   H     +  + D++VV+++G     G   +         V  + GS    P  
Sbjct: 185 TTTIYVTHDQVEAMT-LADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGS----PPM 239

Query: 339 NLL 341
           N L
Sbjct: 240 NFL 242

Length = 338

>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score =  134 bits (340), Expect = 7e-36
 Identities = 75/217 (34%), Positives = 112/217 (51%), Gaps = 19/217 (8%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
                 V  L  V+  ++ GE +A++GPSGSGK+TLL  L G  +   SG++  NG+  +
Sbjct: 12  GLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPT-SGEVLINGKDLT 70

Query: 167 -------SSLKRKT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIM 218
                  + L+RK  GFV Q+  L P LTVLE +    L+       R+   E+   V  
Sbjct: 71  KLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEV-- 128

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            LGL           L    SGG+++RV+I + ++ NP  +L DEPT  LDS TA+ ++ 
Sbjct: 129 -LGLEDRLLKKKPSEL----SGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLE 183

Query: 279 TLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
            LR L +  G+T+I   H P   L +  D+V+ L +G
Sbjct: 184 LLRELNKERGKTIIMVTHDP--ELAKYADRVIELKDG 218

Length = 226

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score =  129 bits (326), Expect = 8e-34
 Identities = 69/226 (30%), Positives = 109/226 (48%), Gaps = 19/226 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSSSL 169
           +  L+ VS  V+PGE+  ++GP+G+GKTTL   ++G LR   SG + ++G          
Sbjct: 13  LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPT-SGSVLFDGEDITGLPPHE 71

Query: 170 KRKTGFV-T-QDDVLYPHLTVLETLSYAALLRLPKKL-------TREEKIEQAEMVIMEL 220
             + G   T Q   L+P LTVLE +  AA  R    L          E  E+AE ++  +
Sbjct: 72  IARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV 131

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           GL    +   G      +S G+++R+ I + +  +P  LLLDEP +GL+    + +   +
Sbjct: 132 GLADLADRPAGE-----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELI 186

Query: 281 RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           R L   G TV+   H     +  + D+V VL +G  I  G   +V 
Sbjct: 187 RELRERGITVLLVEHDMDV-VMSLADRVTVLDQGRVIAEGTPDEVR 231

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score =  127 bits (321), Expect = 8e-34
 Identities = 72/207 (34%), Positives = 103/207 (49%), Gaps = 51/207 (24%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG------RQFSSS 168
           VLN VS  ++ GE++A+LGPSGSGK+TLL  +AG      SG I  +G            
Sbjct: 15  VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILIDGEDLTDLEDELPP 73

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
           L+R+ G V QD  L+PHLTVLE ++                                   
Sbjct: 74  LRRRIGMVFQDFALFPHLTVLENIAL---------------------------------- 99

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGG 287
                   G+SGG+++RV++ + + ++P  LLLDEPTS LD  T + + A L+ L A+ G
Sbjct: 100 --------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLG 151

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEG 314
            TV+   H       R+ D+VVVL +G
Sbjct: 152 ITVVLVTHDLDE-AARLADRVVVLRDG 177

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score =  128 bits (324), Expect = 9e-34
 Identities = 73/216 (33%), Positives = 110/216 (50%), Gaps = 18/216 (8%)

Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL 169
             T   ++ +S  V  GE+  +LG +G+GKTT L  L G LR   SG    NG    +  
Sbjct: 12  KGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR-PTSGTAYINGYSIRTDR 70

Query: 170 K---RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
           K   +  G+  Q D L+  LTV E L + A L   K L + E  E+ E+++  LGLT   
Sbjct: 71  KAARQSLGYCPQFDALFDELTVREHLRFYARL---KGLPKSEIKEEVELLLRVLGLTDKA 127

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
           N        R +SGG ++++S+   ++  PS LLLDEPTSGLD  + + I   +  + R 
Sbjct: 128 NKRA-----RTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEV-RK 181

Query: 287 GRTVITTIHQP--SSRLYRMFDKVVVLSEGSPIYSG 320
           GR++I T H    +  L    D++ ++S+G     G
Sbjct: 182 GRSIILTTHSMDEAEALC---DRIAIMSDGKLRCIG 214

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system

 Score =  127 bits (322), Expect = 1e-33
 Identities = 68/205 (33%), Positives = 99/205 (48%), Gaps = 21/205 (10%)

Query: 125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ-FSSSLK-------RKTGFV 176
             E+  + G SG+GK+TLL  +AG L     G I  NG   F S  K       RK G V
Sbjct: 22  NEEVTGIFGASGAGKSTLLRCIAG-LEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80

Query: 177 TQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236
            Q   L+PHL V E L++     L +K  RE++I   E++ + LGL    N         
Sbjct: 81  FQQYALFPHLNVRENLAFG----LKRKRNREDRISVDELLDL-LGLDHLLNRYPAQ---- 131

Query: 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRTVITTIH 295
            +SGGE++RV++ + +   P  LLLDEP S LD     +++  L+ +       VI   H
Sbjct: 132 -LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTH 190

Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSG 320
              S    + D++VV+ +G   Y G
Sbjct: 191 DL-SEAEYLADRIVVMEDGRLQYIG 214

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score =  125 bits (318), Expect = 2e-33
 Identities = 58/203 (28%), Positives = 97/203 (47%), Gaps = 49/203 (24%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSLKR 171
            L+ +S  V+ GE+  +LGP+G+GKTTL+  + G L+   SG+I   G   ++    +KR
Sbjct: 15  ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDIKKEPEEVKR 73

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
           + G++ ++  LY +LTV E L                                       
Sbjct: 74  RIGYLPEEPSLYENLTVRENLKL------------------------------------- 96

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                  SGG ++R+++ Q +L +P  L+LDEPTSGLD  + +     LR L + G+T++
Sbjct: 97  -------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTIL 149

Query: 292 TTIHQPSSRLYRMFDKVVVLSEG 314
            + H       R+ D+V +L+ G
Sbjct: 150 LSSHILEE-AERLCDRVAILNNG 171

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  130 bits (329), Expect = 3e-33
 Identities = 68/217 (31%), Positives = 112/217 (51%), Gaps = 24/217 (11%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNG 162
           +K     + ++ +S  +K GE + +LGPSG GKTTLL  +AG     F    SG+I  +G
Sbjct: 12  SKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAG-----FEQPSSGEILLDG 66

Query: 163 RQFS--SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL 220
              +     KR  G V Q   L+PH+TV E +++   L++ KKL + E   + E  +  +
Sbjct: 67  EDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFG--LKVRKKLKKAEIKARVEEALELV 124

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           GL    +          +SGG+++RV++ + ++  P  LLLDEP S LD+   +++   L
Sbjct: 125 GLEGFADRKP-----HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKEL 179

Query: 281 RGLARGGRTVITTI---HQPSSRLYRMFDKVVVLSEG 314
           + L R     IT +   H     L  M D++ V+++G
Sbjct: 180 KELQR--ELGITFVYVTHDQEEAL-AMSDRIAVMNDG 213

Length = 352

>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C

 Score =  124 bits (314), Expect = 3e-32
 Identities = 83/232 (35%), Positives = 121/232 (52%), Gaps = 42/232 (18%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNGRQFS---- 166
           VL  VS  +  G+ +A++GPSGSGK+T+L     RL  +F    SG I  +G+       
Sbjct: 16  VLKDVSFTIPAGKKVAIVGPSGSGKSTIL-----RLLFRFYDVSSGSILIDGQDIREVTL 70

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-----VIMEL- 220
            SL+R  G V QD VL+ + T+   + Y          T EE IE A+       IM   
Sbjct: 71  DSLRRAIGVVPQDTVLF-NDTIGYNIRYGRP-----DATDEEVIEAAKAAQIHDKIMRFP 124

Query: 221 -GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            G     +++VG    RG  +SGGE++RV+I + +L NP  LLLDE TS LD+ T + I 
Sbjct: 125 DGY----DTIVGE---RGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQ 177

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMF--DKVVVLSEGSPIYSGRAAQVMD 327
           A LR +++ GRT I   H    RL  +   DK++VL +G  +  G   +++ 
Sbjct: 178 AALRDVSK-GRTTIVIAH----RLSTIVNADKIIVLKDGRIVERGTHEELLA 224

ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score =  124 bits (313), Expect = 4e-32
 Identities = 79/220 (35%), Positives = 117/220 (53%), Gaps = 34/220 (15%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS-----L 169
           VL G+S  V+ GE++ ++GPSGSGK+TLL  L G L    SG IT +G           L
Sbjct: 17  VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVDGEDVGDKKDILKL 75

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           +RK G V Q   L+PHLTVLE ++ A      KKL++ E  E+A    +EL L +     
Sbjct: 76  RRKVGMVFQQFNLFPHLTVLENVTLA--PVKVKKLSKAEAREKA----LEL-LEK----- 123

Query: 230 VG-------GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
           VG        P    +SGG+++RV+I + + ++P  +L DEPTS LD      ++  ++ 
Sbjct: 124 VGLADKADAYP--AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKD 181

Query: 283 LARGGRTVITTIH------QPSSRLYRMFDKVVVLSEGSP 316
           LA  G T+I   H      + + R+  M D+  ++ EG P
Sbjct: 182 LAEEGMTMIIVTHEMGFAREVADRVIFM-DQGKIIEEGPP 220

Length = 240

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score =  123 bits (310), Expect = 6e-32
 Identities = 70/214 (32%), Positives = 112/214 (52%), Gaps = 22/214 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           VL  VS  VKPGE LA++GP+G+GK+TLL A+ G L+   SG I   G+      KR  G
Sbjct: 14  VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK-PTSGSIRVFGKPLEKERKR-IG 71

Query: 175 FVTQD---DVLYPHLTVLETLSYAAL--LRLPKKLTRE--EKIEQA-EMVIMELGLTRCR 226
           +V Q    D  +P ++V + +         L ++L++    K+++A E V +     R  
Sbjct: 72  YVPQRRSIDRDFP-ISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQ- 129

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
                      +SGG+++RV + + ++ +P  LLLDEP +G+D  T + I   LR L R 
Sbjct: 130 --------IGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRRE 181

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           G T++   H     +   FD+V++L   + + SG
Sbjct: 182 GMTILVVTHDLGL-VLEYFDRVLLL-NRTVVASG 213

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score =  122 bits (309), Expect = 7e-32
 Identities = 64/188 (34%), Positives = 105/188 (55%), Gaps = 14/188 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS------ 168
           VL G+   VK GE++ ++GPSGSGK+TLL  +   L    SG I  +G + +        
Sbjct: 15  VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCIN-LLEEPDSGTIIIDGLKLTDDKKNINE 73

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
           L++K G V Q   L+PHLTVLE ++ A      K +++ E  E+A  ++ ++GL    ++
Sbjct: 74  LRQKVGMVFQQFNLFPHLTVLENITLA--PIKVKGMSKAEAEERALELLEKVGLADKADA 131

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
               P    +SGG+++RV+I + + +NP  +L DEPTS LD      ++  ++ LA  G 
Sbjct: 132 Y---P--AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGM 186

Query: 289 TVITTIHQ 296
           T++   H+
Sbjct: 187 TMVVVTHE 194

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score =  123 bits (312), Expect = 9e-32
 Identities = 71/221 (32%), Positives = 107/221 (48%), Gaps = 19/221 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           +L+ +S  +  GE+  +LGP+GSGK+TLL  LAG L+ K SG++  +G+  +S     L 
Sbjct: 17  ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPK-SGEVLLDGKDIASLSPKELA 75

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLT----REEKIEQAEMVIMELGLTRCR 226
           +K  +V Q       LTV E +      R P         +E  E  E  +  LGL    
Sbjct: 76  KKLAYVPQSPSAPFGLTVYELVLLG---RYPHLGLFGRPSKEDEEIVEEALELLGLEHLA 132

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR- 285
           +          +SGGER+RV I + +      LLLDEPTS LD      ++  LR L R 
Sbjct: 133 DR-----PVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNRE 187

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            G TV+  +H  +    R  D +++L +G  +  G   +V+
Sbjct: 188 KGLTVVMVLHDLNLAA-RYADHLILLKDGKIVAQGTPEEVL 227

Length = 258

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  125 bits (317), Expect = 1e-31
 Identities = 80/265 (30%), Positives = 122/265 (46%), Gaps = 28/265 (10%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS- 166
           K+      L+ +S  +K GEL+A+LGPSG+GK+TLL  +AG      +G+I  NGR    
Sbjct: 10  KRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPD-AGRIRLNGRVLFD 68

Query: 167 ----SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
               +   RK GFV Q   L+PH+TV + +++     L  +  R  + E    V  EL L
Sbjct: 69  VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFG----LKVRKERPSEAEIRARV-EEL-L 122

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
              +   +       +SGG+R+RV++ + + V P  LLLDEP   LD+   + +   LR 
Sbjct: 123 RLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRK 182

Query: 283 L-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQ---------VMDYFGSI 332
           L  R G T +   H        + D+VVVL++G     G   +         V  + G +
Sbjct: 183 LHDRLGVTTVFVTHDQEE-ALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLGEV 241

Query: 333 GYVP-----GFNLLNPADFLLDLAN 352
             +P     G   +   D  L L  
Sbjct: 242 NVLPGEVILGQLQVGAHDIGLPLQP 266

Length = 345

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score =  121 bits (305), Expect = 3e-31
 Identities = 71/203 (34%), Positives = 114/203 (56%), Gaps = 12/203 (5%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK 170
             V+ L  +S  V+ GE +A++GPSG GK+TLL  +AG  R   SG++  +G   +    
Sbjct: 15  GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER-PTSGEVLVDGEPVTGP-G 72

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
              G+V Q D L P LTVL+ ++    L+    + + E  E+AE ++  +GL+   N+  
Sbjct: 73  PDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAY- 128

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRT 289
             P    +SGG R+RV++ + + V+P  LLLDEP S LD+ T +++   L  + R  G+T
Sbjct: 129 --P--HQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKT 184

Query: 290 VITTIHQPSSRLYRMFDKVVVLS 312
           V+   H     ++ + D+VVVLS
Sbjct: 185 VLLVTHDIDEAVF-LADRVVVLS 206

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  121 bits (307), Expect = 3e-31
 Identities = 70/204 (34%), Positives = 107/204 (52%), Gaps = 12/204 (5%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKR 171
            V VL  ++  V+ GE +A+LGPSG GK+TLL  +AG L    SG++  +GR   +    
Sbjct: 15  GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAG-LEKPTSGEVLLDGRP-VTGPGP 72

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
             G+V Q+D L P LTVL+ ++    LR     ++ E  E+A+ ++  +GL    +    
Sbjct: 73  DIGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDK--- 126

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRTV 290
                 +SGG R+RV+I + +   P  LLLDEP   LD+ T + +   L  L     +TV
Sbjct: 127 --YPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTV 184

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEG 314
           +   H     +Y + D+VVVLS  
Sbjct: 185 LLVTHDVDEAVY-LADRVVVLSNR 207

Length = 248

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score =  119 bits (301), Expect = 9e-31
 Identities = 70/212 (33%), Positives = 110/212 (51%), Gaps = 21/212 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS---LKR 171
            L+GVS  + PG +  +LGP+G+GKTTL+  LA       SG I  +G+        L+R
Sbjct: 15  ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPS-SGTIRIDGQDVLKQPQKLRR 72

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
           + G++ Q+  +YP+ TV E L Y A L   K +  +E   + + V+  + L       +G
Sbjct: 73  RIGYLPQEFGVYPNFTVREFLDYIAWL---KGIPSKEVKARVDEVLELVNLGDRAKKKIG 129

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG---GR 288
                 +SGG R+RV I Q ++ +PS L++DEPT+GLD    +RI    R L       R
Sbjct: 130 S-----LSGGMRRRVGIAQALVGDPSILIVDEPTAGLDP--EERIR--FRNLLSELGEDR 180

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
            VI + H        + ++V VL++G  ++ G
Sbjct: 181 IVILSTHIVEDVES-LCNQVAVLNKGKLVFEG 211

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters

 Score =  117 bits (295), Expect = 2e-30
 Identities = 66/208 (31%), Positives = 96/208 (46%), Gaps = 54/208 (25%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS- 166
           R   VL  VS  +KPGE +A++GPSGSGK+TLL  L        SG+I  +G   R    
Sbjct: 13  RPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDL 71

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
            SL++   +V QD  L+   T+ E +                                  
Sbjct: 72  ESLRKNIAYVPQDPFLF-SGTIRENI---------------------------------- 96

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
                      +SGG+R+R++I + +L +P  L+LDE TS LD  T   I+  LR L   
Sbjct: 97  -----------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRAL-AK 144

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           G+TVI   H+ S+   R  D+++VL +G
Sbjct: 145 GKTVIVIAHRLST--IRDADRIIVLDDG 170

The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score =  119 bits (301), Expect = 3e-30
 Identities = 67/218 (30%), Positives = 116/218 (53%), Gaps = 16/218 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKT- 173
           VL  +S  V+ GE+ A++GP+G+GK+TLL A+ G L+   SG+I   G+      KR   
Sbjct: 19  VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK-PSSGEIKIFGKPVRKRRKRLRI 77

Query: 174 GFVTQD---DVLYPHLTVLETLSYAALLRLP--KKLTREEKIEQAEMVIMELGLTRCRNS 228
           G+V Q    D  +P +TV + +      +    ++L +++K E+ +  +  +G+   R+ 
Sbjct: 78  GYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNKKDK-EKVDEALERVGMEDLRDR 135

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
            +G      +SGG+++RV + + +  NP  LLLDEP +G+D    + I   L+ L + G+
Sbjct: 136 QIGE-----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGK 190

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           TV+   H     +   FD+V+ L     I SG   +V+
Sbjct: 191 TVLMVTHDLGL-VMAYFDRVICL-NRHLIASGPPEEVL 226

Length = 254

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score =  118 bits (298), Expect = 4e-30
 Identities = 66/234 (28%), Positives = 118/234 (50%), Gaps = 32/234 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------- 167
            L  VS  + PGE +A++GPSG+GK+TLL  L G +    SG +  +G   +        
Sbjct: 16  ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDINKLKGKALR 74

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETL---------SYAALLRLPKKLTREEKIEQAEMV-I 217
            L+R+ G + Q   L   L+VLE +         ++ +L  L  K  ++  +   E V +
Sbjct: 75  QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL 134

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
           ++    R             +SGG+++RV+I + ++  P  +L DEP + LD  ++++++
Sbjct: 135 LDKAYQRADQ----------LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVM 184

Query: 278 ATLRGLARG-GRTVITTIHQPS-SRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
             L+ + R  G TVI ++HQ   +R Y   D++V L +G  ++ G  A++ D  
Sbjct: 185 DLLKRINREEGITVIVSLHQVDLAREY--ADRIVGLKDGRIVFDGPPAELTDEV 236

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents

 Score =  118 bits (298), Expect = 5e-30
 Identities = 70/208 (33%), Positives = 109/208 (52%), Gaps = 17/208 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------- 167
           VL GV   V+ GE+LA++GPSGSGK+TLL  + G LR   SG++  +G   S        
Sbjct: 15  VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR-PDSGEVLIDGEDISGLSEAELY 73

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
            L+R+ G + Q   L+  LTV E +++   LR   +L+ EE  E     +  +GL    +
Sbjct: 74  RLRRRMGMLFQSGALFDSLTVFENVAF--PLREHTRLSEEEIREIVLEKLEAVGLRGAED 131

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-G 286
                     +SGG +KRV++ + + ++P  LL DEPT+GLD   +  I   +R L +  
Sbjct: 132 LYPA-----ELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL 186

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           G T I   H   +  + + D++ VL +G
Sbjct: 187 GLTSIMVTHDLDT-AFAIADRIAVLYDG 213

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  118 bits (298), Expect = 6e-30
 Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 22/230 (9%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----- 167
           ++ +N VS  V+PGE++ ++GP+G+GKTTL   + G  +   SG + + GR  +      
Sbjct: 17  LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPS-SGTVIFRGRDITGLPPHR 75

Query: 168 SLKRKTGFVTQDDVLYPHLTVLE--------TLSYAALLRLPKKLTREEKI-EQAEMVIM 218
             +       Q   L+P LTVLE         L  + LL  P+    E +  E+A  ++ 
Sbjct: 76  IARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLE 135

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            +GL    +   G      +S G+++R+ I + +   P  LLLDEP +GL+    + +  
Sbjct: 136 FVGLGELADRPAGN-----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190

Query: 279 TLRGL-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            +R L  RGG T++   H     +  + D++VVL+ G  I  G   +V +
Sbjct: 191 LIRELRDRGGVTILLIEHDMKL-VMGLADRIVVLNYGEVIAEGTPEEVRN 239

Length = 250

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score =  115 bits (290), Expect = 6e-30
 Identities = 64/208 (30%), Positives = 96/208 (46%), Gaps = 57/208 (27%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
           + +    + L+ VS  +K GE++A++GP+GSGK+TLL A+AG L+   SG+I  +G    
Sbjct: 6   SFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDG---- 60

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
                                              K + +    E    +     L    
Sbjct: 61  -----------------------------------KDIAKLPLEELRRRIGYVPQL---- 81

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
                       SGG+R+RV++ + +L+NP  LLLDEPTSGLD  + +R++  LR LA  
Sbjct: 82  ------------SGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEE 129

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           GRTVI   H P        D+V+VL +G
Sbjct: 130 GRTVIIVTHDPEL-AELAADRVIVLKDG 156

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C

 Score =  117 bits (296), Expect = 6e-30
 Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 30/229 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SSLK 170
           VL  +S  +  GE +A++GPSGSGK+TL+  L  R     SG+I  +G   R ++ +SL+
Sbjct: 17  VLRDISLDIPAGETVALVGPSGSGKSTLV-NLIPRFYDVDSGRILIDGHDVRDYTLASLR 75

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL--GLT 223
           R+ G V+QD  L+ + TV E ++Y          TREE  E A        IMEL  G  
Sbjct: 76  RQIGLVSQDVFLF-NDTVAENIAYGRP-----GATREEVEEAARAANAHEFIMELPEGY- 128

Query: 224 RCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
              ++V+G    RG+  SGG+R+R++I + +L +P  L+LDE TS LD+ + + + A L 
Sbjct: 129 ---DTVIGE---RGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALE 182

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
            L +  RT     H+ S+      D++VVL +G  +  G   +++   G
Sbjct: 183 RLMK-NRTTFVIAHRLST--IENADRIVVLEDGKIVERGTHEELLAQGG 228

MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234

>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

 Score =  117 bits (296), Expect = 8e-30
 Identities = 73/205 (35%), Positives = 113/205 (55%), Gaps = 24/205 (11%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL-------AGRLRGKFSGKITY 160
           K+    +VL+G+   VKPGE++A++GPSGSGKTTLL  +       AG +R    G IT 
Sbjct: 11  KKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR---VGDITI 67

Query: 161 NG-RQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA 213
           +  R  S        L++  GFV Q+  L+PH TVLE +    ++   K   +EE   +A
Sbjct: 68  DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVI--VKGEPKEEATARA 125

Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
             ++ ++GL     S    P  R +SGG+++RV+I + + + P  +L DEPTS LD    
Sbjct: 126 RELLAKVGLAGKETSY---P--RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELV 180

Query: 274 QRIVATLRGLARGGRTVITTIHQPS 298
             ++ T+R LA+  RT++   H+ S
Sbjct: 181 GEVLNTIRQLAQEKRTMVIVTHEMS 205

Length = 250

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score =  115 bits (291), Expect = 2e-29
 Identities = 76/213 (35%), Positives = 112/213 (52%), Gaps = 13/213 (6%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS-- 168
           +TV  ++GVS  VKPGE+  +LGP+G+GKTT L  LAG L    +G  T +G        
Sbjct: 16  KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPD-AGFATVDGFDVVKEPA 74

Query: 169 -LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
             +R+ GFV+    LY  LT  E L Y A L     L  +E   + E +   LG+    +
Sbjct: 75  EARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLD 131

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
             VGG      S G R++V+I + ++ +P  LLLDEPT+GLD    + +   +R L   G
Sbjct: 132 RRVGG-----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALG 186

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           + ++ + H     + R+ D+VVVL  G  +Y G
Sbjct: 187 KCILFSTHI-MQEVERLCDRVVVLHRGRVVYEG 218

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein

 Score =  116 bits (292), Expect = 2e-29
 Identities = 76/225 (33%), Positives = 116/225 (51%), Gaps = 17/225 (7%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS- 166
           K+  +   L+ V+  V  G L+A+LGPSGSGK+TLL  +AG L    SG+I  NG+  + 
Sbjct: 8   KRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAG-LEQPDSGRIRLNGQDATR 66

Query: 167 -SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLTR 224
             +  RK GFV Q   L+ HLTV + +++   +R   K   + ++E+  E+V +E    R
Sbjct: 67  VHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDR 126

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             N          +SGG+R+RV++ + + V P  LLLDEP   LD+   + + + LR L 
Sbjct: 127 YPNQ---------LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLH 177

Query: 285 RGGR--TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
                 TV  T  Q       + D++VV+S G     G   +V D
Sbjct: 178 DEVHVTTVFVTHDQ--EEAMEVADRIVVMSNGKIEQIGSPDEVYD 220

[Transport and binding proteins, Anions]. Length = 237

>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  116 bits (292), Expect = 5e-29
 Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 22/222 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFS----S 167
           +L+GV   V  GE+LA+LG SGSGK+TLL  + G LR    G+I  +G    Q S     
Sbjct: 23  ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR-PDKGEILIDGEDIPQLSEEELY 81

Query: 168 SLKRKTGFVTQDDVLYPHLTVLE--TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
            ++++ G + Q   L+  LTV E          +LP+ L RE       +V+M+L L   
Sbjct: 82  EIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRE-------LVLMKLELVGL 134

Query: 226 RNSVVGGPLF-RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL- 283
           R +     L+   +SGG RKRV++ + + ++P  L LDEPTSGLD  +A  I   +R L 
Sbjct: 135 RGAA--ADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELN 192

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
              G TVI   H   S L  + D+V VL++G  I  G   ++
Sbjct: 193 DALGLTVIMVTHDLDS-LLTIADRVAVLADGKVIAEGTPEEL 233

Length = 263

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score =  114 bits (288), Expect = 6e-29
 Identities = 69/221 (31%), Positives = 112/221 (50%), Gaps = 22/221 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS-----L 169
           +L GVS  V  GE++A+LG +G+GKTTLL  + G L  + SG I ++GR  +        
Sbjct: 15  ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPR-SGSIRFDGRDITGLPPHERA 73

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EM--VIMELGLTRCR 226
           +   G+V +   ++P LTV E L   A  R   K  R+ ++E+  E+   + E      R
Sbjct: 74  RAGIGYVPEGRRIFPELTVEENLLLGAYARRRAK--RKARLERVYELFPRLKE------R 125

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
              + G L    SGGE++ ++I + ++  P  LLLDEP+ GL     + I   +R L   
Sbjct: 126 RKQLAGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDE 181

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           G T++  + Q +     + D+  VL  G  +  G AA+++ 
Sbjct: 182 GVTIL-LVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  115 bits (290), Expect = 8e-29
 Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 34/242 (14%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           P         L  V+  +  GE++A++GPSG+GK+TLL +L G +    SG+I +NG Q 
Sbjct: 14  PGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPT-SGEILFNGVQI 68

Query: 166 SS-------SLKRKTGFVTQDDVLYPHLTVLET-----LSY----AALLRLPKKLTREEK 209
           +         L+R  G + Q   L P L+VLE      L Y     +L  L  K  + + 
Sbjct: 69  TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQA 128

Query: 210 IEQAEMV-IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL 268
           ++  E V I++    R             +SGG+++RV+I + ++  P  +L DEP + L
Sbjct: 129 LDALERVGILDKAYQRAST----------LSGGQQQRVAIARALVQQPKIILADEPVASL 178

Query: 269 DSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           D  +A++++  L+ + +  G TVI  +HQ      +  D+++ L  G  ++ G A+++ D
Sbjct: 179 DPESAKKVMDILKDINQEDGITVIVNLHQVDLAK-KYADRIIGLKAGRIVFDGPASELTD 237

Query: 328 YF 329
             
Sbjct: 238 EA 239

Length = 258

>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter

 Score =  114 bits (287), Expect = 1e-28
 Identities = 74/215 (34%), Positives = 113/215 (52%), Gaps = 15/215 (6%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKRK 172
            L  VS  V+ G+   +LGP+GSGK+ LL  +AG ++   SGKI  NG+  +     KR 
Sbjct: 14  KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPD-SGKILLNGKDITNLPPEKRD 72

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLTRCRNSVVG 231
             +V Q+  L+PH+TV + ++Y    R   K   E K+ + AEM    LG+    N    
Sbjct: 73  ISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEM----LGIDHLLNRKP- 127

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTV 290
                 +SGGE++RV+I + ++VNP  LLLDEP S LD  T +++   L+ + +  G TV
Sbjct: 128 ----ETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTV 183

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           +   H        + DKV ++  G  I  G+  +V
Sbjct: 184 LHVTHDFEEAWA-LADKVAIMLNGKLIQVGKPEEV 217

Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235

>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein

 Score =  113 bits (284), Expect = 2e-28
 Identities = 73/214 (34%), Positives = 112/214 (52%), Gaps = 22/214 (10%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSL 169
              VL GVS  +  GE++A++G SGSGK+TLL  L G L    SG++ +NG+  S  SS 
Sbjct: 17  DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGG-LDNPTSGEVLFNGQSLSKLSSN 75

Query: 170 KR------KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
           +R      K GF+ Q   L P  T LE ++   L+    K + +E  E+A  ++ ++GL 
Sbjct: 76  ERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLE 132

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
              N          +SGGER+RV+I + ++  PS +L DEPT  LD+  A+ I   +  L
Sbjct: 133 HRINHRPSE-----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLEL 187

Query: 284 ARGGRT--VITTIHQPSSRLYRMFDKVVVLSEGS 315
            R   T  ++ T H     L +  D+V+ + +G 
Sbjct: 188 NRELNTSFLVVT-HDL--ELAKKLDRVLEMKDGQ 218

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221

>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group

 Score =  112 bits (283), Expect = 2e-28
 Identities = 65/214 (30%), Positives = 111/214 (51%), Gaps = 21/214 (9%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--- 163
           +K+     +L+ ++  ++ G++ A++G SGSGK+TLL  + G L    SG++  NG+   
Sbjct: 5   SKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNII-GLLEKFDSGQVYLNGQETP 63

Query: 164 ----QFSSSLKR-KTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVI 217
               + +S  +R K G++ Q+  L  + TV E L       +L KK  RE+K E  E V 
Sbjct: 64  PLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVG 123

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
           + L L +         ++  +SGGE++RV++ + +L  P  +L DEPT  LD      ++
Sbjct: 124 LNLKLKQ--------KIYE-LSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVL 174

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311
             L  L   G+T+I   H P   + +  D+V+ L
Sbjct: 175 DLLLELNDEGKTIIIVTHDPE--VAKQADRVIEL 206

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  113 bits (285), Expect = 2e-28
 Identities = 70/222 (31%), Positives = 112/222 (50%), Gaps = 25/222 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-----SSL 169
            L  VS  ++ GE + ++GP+GSGK+TLL  L G L+   SG++  +G   S       L
Sbjct: 19  ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK-PTSGEVLVDGLDTSSEKSLLEL 77

Query: 170 KRKTGFVTQDDVLYPHL-----TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
           ++K G V Q+    P       TV + +++         L REE  E+    +  +GL  
Sbjct: 78  RQKVGLVFQN----PDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEE 130

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             +     P F  +SGG+++RV+I   + + P  LLLDEPT+GLD    + ++  L+ L 
Sbjct: 131 LLDR----PPFN-LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLK 185

Query: 285 R-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
             GG+T+I   H     +    D+VVVL +G  +  G  A++
Sbjct: 186 EEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDPAEI 226

Length = 235

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score =  111 bits (281), Expect = 2e-28
 Identities = 70/211 (33%), Positives = 102/211 (48%), Gaps = 49/211 (23%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-SLK--- 170
           VL+ +S  ++ GE++ +LGP+G+GK+TLL  LAG L+   SG+I  +G+  +S S K   
Sbjct: 14  VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDGKDLASLSPKELA 72

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           RK  +V Q          LE L  A L               A+    EL          
Sbjct: 73  RKIAYVPQ---------ALELLGLAHL---------------ADRPFNEL---------- 98

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRT 289
                   SGGER+RV + + +   P  LLLDEPTS LD      ++  LR LAR  G+T
Sbjct: 99  --------SGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKT 150

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           V+  +H   +   R  D+V++L +G  +  G
Sbjct: 151 VVMVLHDL-NLAARYADRVILLKDGRIVAQG 180

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

 Score =  115 bits (291), Expect = 4e-28
 Identities = 79/245 (32%), Positives = 122/245 (49%), Gaps = 26/245 (10%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
            K+    + L  +S  VK GE + +LGPSG GKTTLL  +AG L  + +G I   GR  +
Sbjct: 11  RKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAG-LERQTAGTIYQGGRDIT 69

Query: 167 --SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
                KR  G V Q   L+P+LTV + ++Y       + + R E  E+   ++  +GL  
Sbjct: 70  RLPPQKRDYGIVFQSYALFPNLTVADNIAYGL---KNRGMGRAEVAERVAELLDLVGLPG 126

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
                 G      +SGG+++RV++ + +  +P  LLLDEP S LD+   + +   +R L 
Sbjct: 127 SERKYPG-----QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQ 181

Query: 285 RGGRTVITTI---HQPSSRLYRMFDKVVVLSE------GSP--IY-SGRAAQVMDYFGSI 332
           R  R  +TTI   H     L  M D++VV++       G+P  IY       V D+ G +
Sbjct: 182 R--RLGVTTIMVTHDQEEAL-SMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVGEV 238

Query: 333 GYVPG 337
            ++PG
Sbjct: 239 NWLPG 243

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score =  112 bits (283), Expect = 4e-28
 Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 21/218 (9%)

Query: 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR----- 163
              +V  L+ VS  +K GE L ++G SGSGK+TL  A+ G L    SG I ++G+     
Sbjct: 14  GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILG-LLKPTSGSIIFDGKDLLKL 72

Query: 164 --QFSSSLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
             +     +++   V QD    L P +T+ E +  A  LR+  KL+++E  ++A ++++ 
Sbjct: 73  SRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQI--AEPLRIHGKLSKKEARKEAVLLLLV 130

Query: 220 -LGL-TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            +GL     N          +SGG+R+RV+I + + +NP  L+ DEPTS LD +   +I+
Sbjct: 131 GVGLPEEVLNR-----YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQIL 185

Query: 278 ATLRGL-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
             L+ L    G T++   H     + ++ D+V V+  G
Sbjct: 186 DLLKKLQEELGLTLLFITHDLGV-VAKIADRVAVMYAG 222

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family

 Score =  111 bits (280), Expect = 7e-28
 Identities = 69/220 (31%), Positives = 114/220 (51%), Gaps = 23/220 (10%)

Query: 103 HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG 162
           HG   KQ     VL  ++  + PGE++ + GPSGSGKTTLLT L G LR    G +   G
Sbjct: 13  HGSLRKQ-----VLFDINLEINPGEIVILTGPSGSGKTTLLT-LIGGLRSVQEGSLKVLG 66

Query: 163 RQFSSS-------LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM 215
           ++   +       L+R  G++ Q   L   LT  + +  A  L L   L+ +E  E+A  
Sbjct: 67  QELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMA--LELQPNLSYQEARERARA 124

Query: 216 VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           ++  +GL    +          +SGG+++RV+I + ++  P  +L DEPT+ LDS + + 
Sbjct: 125 MLEAVGLGDHLDY-----YPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179

Query: 276 IVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           +V  ++ LAR  G T++   H    R+  + D++V + +G
Sbjct: 180 VVELMQKLAREQGCTILIVTHDN--RILDVADRIVHMEDG 217

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220

>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter

 Score =  112 bits (281), Expect = 8e-28
 Identities = 74/217 (34%), Positives = 110/217 (50%), Gaps = 13/217 (5%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKRKT 173
           L+ VS  +  GEL+A+LGPSGSGKTTLL  +AG L    SG I + G   +     +R  
Sbjct: 18  LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAG-LERPDSGTILFGGEDATDVPVQERNV 76

Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
           GFV Q   L+ H+TV + +++   LR+  +  R  + E    V   L L +        P
Sbjct: 77  GFVFQHYALFRHMTVFDNVAFG--LRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP 134

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
               +SGG+R+RV++ + + V P  LLLDEP   LD+   + +   LR L       +TT
Sbjct: 135 --AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHD--ELHVTT 190

Query: 294 I---HQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           +   H     L  + D+VVV+++G     G   +V D
Sbjct: 191 VFVTHDQEEAL-EVADRVVVMNKGRIEQVGTPDEVYD 226

Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score =  110 bits (278), Expect = 9e-28
 Identities = 64/208 (30%), Positives = 108/208 (51%), Gaps = 16/208 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKRK 172
           VL+ +S  VK GE+   LGP+G+GKTT +  + G L    SG+IT++G+ +       R+
Sbjct: 15  VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILG-LIKPDSGEITFDGKSYQKNIEALRR 73

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
            G + +    YP+LT  E L   A L       R+++I++   V+  +GL          
Sbjct: 74  IGALIEAPGFYPNLTARENLRLLARL----LGIRKKRIDE---VLDVVGL-----KDSAK 121

Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
              +G S G ++R+ I   +L NP  L+LDEPT+GLD    + +   +  L   G TV+ 
Sbjct: 122 KKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLI 181

Query: 293 TIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           + H   S + ++ D++ ++++G  I  G
Sbjct: 182 SSHL-LSEIQKVADRIGIINKGKLIEEG 208

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score =  110 bits (276), Expect = 2e-27
 Identities = 63/207 (30%), Positives = 115/207 (55%), Gaps = 10/207 (4%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS 167
           K+   V+ L+ +S  V+ GE+  +LGP+G+GKTT +  + G +    SG++ ++G+    
Sbjct: 8   KRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL-PDSGEVLFDGKPLDI 66

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
           + + + G++ ++  LYP + V++ L Y A L   K L +EE   + +  +  L L+   N
Sbjct: 67  AARNRIGYLPEERGLYPKMKVIDQLVYLAQL---KGLKKEEARRRIDEWLERLELSEYAN 123

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
             V       +S G +++V     ++ +P  L+LDEP SGLD    + +   +R LAR G
Sbjct: 124 KRV-----EELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAG 178

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEG 314
           +TVI + HQ    +  + D+V++L++G
Sbjct: 179 KTVILSTHQMEL-VEELCDRVLLLNKG 204

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score =  110 bits (276), Expect = 3e-27
 Identities = 70/205 (34%), Positives = 108/205 (52%), Gaps = 15/205 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL--KRK 172
            L+GVS  +K GE   +LGPSG GKTTLL  +AG      SG+I  +G+  ++    KR 
Sbjct: 15  ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAG-FETPTSGEILLDGKDITNLPPHKRP 73

Query: 173 TGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
              V Q+  L+PHLTV E +++   L +LPK   +E   E  ++V +E G    + S   
Sbjct: 74  VNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLE-GYANRKPS--- 129

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTV 290
                 +SGG+++RV+I + ++  P  LLLDEP   LD    + +   L+ L +  G T 
Sbjct: 130 -----QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGS 315
           +   H     L  M D++ V+++G 
Sbjct: 185 VFVTHDQEEAL-TMSDRIAVMNKGK 208

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C

 Score =  109 bits (275), Expect = 4e-27
 Identities = 74/253 (29%), Positives = 121/253 (47%), Gaps = 36/253 (14%)

Query: 81  KFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKT 140
           +FE+V +S +              +P        VL  ++  +KPGE +A++GP+G+GKT
Sbjct: 4   EFENVNFSYD------------EKKP--------VLKDINFSIKPGETVAIVGPTGAGKT 43

Query: 141 TLLTALAGRLRGKFSGKITYNGRQFS----SSLKRKTGFVTQDDVLYPHLTVLETLSYAA 196
           TL+  L  R      G+I  +G         SL+   G V QD  L+   T++E +    
Sbjct: 44  TLINLLM-RFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGR 101

Query: 197 LLRLPKKLTREEKIEQAEMVIMEL--GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV 254
                +++    K   A   IM+L  G     ++V+G      +S GER+ ++I + ML 
Sbjct: 102 PNATDEEVIEAAKEAGAHDFIMKLPNGY----DTVLG-ENGGNLSQGERQLLAIARAMLR 156

Query: 255 NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           +P  L+LDE TS +D+ T + I   L  L   GRT I   H+ S+   +  DK++VL +G
Sbjct: 157 DPKILILDEATSNIDTETEKLIQEALEKL-MKGRTSIIIAHRLST--IKNADKILVLDDG 213

Query: 315 SPIYSGRAAQVMD 327
             I  G   +++ 
Sbjct: 214 KIIEEGTHDELLA 226

Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229

>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

 Score =  109 bits (274), Expect = 7e-27
 Identities = 70/216 (32%), Positives = 110/216 (50%), Gaps = 13/216 (6%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSL 169
           V  +  VS   + GE+  +LG +G+GKTTLL  +A  L    SGK+T +G    +  S +
Sbjct: 15  VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPD-SGKVTIDGVDTVRDPSFV 73

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           +RK G +  +  LY  LT  E L Y A L     L+R+E   +   +   L L    +  
Sbjct: 74  RRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRR 130

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
           VG       S G +++V+I + ++ +PS L+LDEPTSGLD  T ++    ++ L   GR 
Sbjct: 131 VGE-----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRA 185

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           VI + H     +  + D+V+VL +G  +  G    +
Sbjct: 186 VIFSSHI-MQEVEALCDRVIVLHKGEVVLEGSIEAL 220

Length = 245

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score =  108 bits (271), Expect = 2e-26
 Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 32/235 (13%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----- 167
              L  ++  + PGE +A++GPSG+GK+TLL  +  RL    SG I   G   +      
Sbjct: 15  KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCI-NRLVEPSSGSILLEGTDITKLRGKK 73

Query: 168 --SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP------KKLTREEKIEQAEMV--- 216
              L+R+ G + Q   L   LTVLE + +  L   P       + + E+K      +   
Sbjct: 74  LRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV 133

Query: 217 -IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
            + +    R             +SGG+++RV+I + +   P  +L DEP + LD  T+++
Sbjct: 134 GLADKAYQRADQ----------LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQ 183

Query: 276 IVATLRGLARG-GRTVITTIHQPSSRLYRMF-DKVVVLSEGSPIYSGRAAQVMDY 328
           ++  L+ + +  G TVI  +HQ    L + + D++V L  G  ++ G  +++ D 
Sbjct: 184 VMDYLKRINKEDGITVIINLHQVD--LAKKYADRIVGLKAGEIVFDGAPSELDDE 236

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score =  108 bits (272), Expect = 2e-26
 Identities = 65/223 (29%), Positives = 104/223 (46%), Gaps = 23/223 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-----QFSSSL 169
            LN VS  ++ GE L ++G SGSGK+TL   LAG  +   SG I  +G+     + + + 
Sbjct: 22  ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPS-SGSILLDGKPLAPKKRAKAF 80

Query: 170 KRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
            R    V QD    L P  TV   LS    LR       +++I +    + ++GL     
Sbjct: 81  YRPVQMVFQDPYSSLNPRRTVGRILSEP--LRPHGLSKSQQRIAEL---LDQVGL---PP 132

Query: 228 SVVGGPLFRGI---SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
           S     L R     SGG+R+R++I + ++  P  L+LDEPTS LD +   +I+  L  L 
Sbjct: 133 SF----LDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK 188

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           +        I    + +  M D++ V+  G  +  G   +++ 
Sbjct: 189 KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231

Length = 252

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score =  107 bits (270), Expect = 2e-26
 Identities = 76/223 (34%), Positives = 112/223 (50%), Gaps = 27/223 (12%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSLK 170
             L+ VS  V+PG  +A+LGP+G+GK+TL  +L  RL     G+I+  G   R+   +  
Sbjct: 15  RALDDVSFTVRPGRFVALLGPNGAGKSTLF-SLLTRLYVAQEGQISVAGHDLRRAPRAAL 73

Query: 171 RKTGFVTQDDVLYPHLTVLETLSY-AALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
            + G V Q   L   L+V + L Y AAL  L +   R  +I +    +  LGL    +  
Sbjct: 74  ARLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARA-RIAEL---LARLGLAERADDK 129

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGR 288
           V     R ++GG R+RV I + +L  P+ LLLDEPT GLD  +   I A +R LAR  G 
Sbjct: 130 V-----RELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGL 184

Query: 289 TVITTIH-----QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           +V+   H     +         D++VVL  G  +  G AA++ 
Sbjct: 185 SVLWATHLVDEIEAD-------DRLVVLHRGRVLADGAAAELR 220

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  108 bits (271), Expect = 3e-26
 Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 20/223 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           +L+GVS  ++PGE+LA+LGP+G+GK+TLL AL+G L    SG++T NG   +S     L 
Sbjct: 16  LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPD-SGEVTLNGVPLNSWPPEELA 74

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R    + Q+  L    TV E +    + R+P +  RE + ++    I    L     S +
Sbjct: 75  RHRAVLPQNSSLAFPFTVQEVVQ---MGRIPHRSGREPEEDER---IAAQALAATDLSGL 128

Query: 231 GGPLFRGISGGERKRVSIGQ------EMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
            G  +R +SGGE++RV + +        + +   L LDEPTS LD       +   R LA
Sbjct: 129 AGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLA 188

Query: 285 RGGRTVITTIHQPSSRLYRMF-DKVVVLSEGSPIYSGRAAQVM 326
           R G  V+  +H  +  L   + D++V+L +G  I SG    V+
Sbjct: 189 REGGAVLAVLHDLN--LAAQYADRIVLLHQGRVIASGSPQDVL 229

Length = 259

>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins

 Score =  107 bits (270), Expect = 3e-26
 Identities = 75/231 (32%), Positives = 119/231 (51%), Gaps = 31/231 (13%)

Query: 110 TR-TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQF 165
           +R  V +L G+S  + PG+ +A++G SG GK+T++ +L  R     SG+I  +G   R  
Sbjct: 12  SRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVV-SLLERFYDPTSGEILLDGVDIRDL 70

Query: 166 S-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IME 219
           +   L+ + G V+Q+ VL+   T+ E + Y          T EE  E A+       IM 
Sbjct: 71  NLRWLRSQIGLVSQEPVLFD-GTIAENIRYGK-----PDATDEEVEEAAKKANIHDFIMS 124

Query: 220 L--GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           L  G     +++VG    RG  +SGG+++R++I + +L NP  LLLDE TS LD+ + + 
Sbjct: 125 LPDGY----DTLVG---ERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKL 177

Query: 276 IVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           +   L   A  GRT I   H+ S+   R  D + VL  G  +  G   ++M
Sbjct: 178 VQEAL-DRAMKGRTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELM 225

MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score =  107 bits (269), Expect = 3e-26
 Identities = 73/226 (32%), Positives = 117/226 (51%), Gaps = 17/226 (7%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
           +K+     V+NGVS  VK GE++ +LGP+G+GKTT    + G ++   SGKI  +G Q  
Sbjct: 7   SKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPD-SGKILLDG-QDI 64

Query: 167 SSL---KRK---TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL 220
           + L   KR     G++ Q+  ++  LTV E +     +R    L+++E+ E+ E ++ E 
Sbjct: 65  TKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEF 121

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
            +T  R S         +SGGER+RV I + +  NP  LLLDEP +G+D    Q I   +
Sbjct: 122 HITHLRKSKASS-----LSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176

Query: 281 RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           + L   G  V+ T H     L  + D+  ++ EG  +  G   ++ 
Sbjct: 177 KILKDRGIGVLITDHNVRETL-SITDRAYIIYEGKVLAEGTPEEIA 221

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  110 bits (276), Expect = 3e-26
 Identities = 66/209 (31%), Positives = 96/209 (45%), Gaps = 31/209 (14%)

Query: 130 AMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK--------RKTGFVTQDDV 181
           A+ GPSGSGKT+L+  +AG  R    G+I  NGR    + K        R+ G+V QD  
Sbjct: 28  ALFGPSGSGKTSLINMIAGLTRPD-EGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR 86

Query: 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF----RG 237
           L+PH TV   L Y          +   + +Q   ++  LG+           L       
Sbjct: 87  LFPHYTVRGNLRYGM------WKSMRAQFDQ---LVALLGI---------EHLLDRYPGT 128

Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
           +SGGE++RV+IG+ +L  P  LL+DEP + LD    + I+  L  L       I  +   
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHS 188

Query: 298 SSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
              + R+ D+VVVL  G    SG   +V 
Sbjct: 189 LDEVLRLADRVVVLENGKVKASGPLEEVW 217

Length = 352

>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  112 bits (282), Expect = 6e-26
 Identities = 67/220 (30%), Positives = 111/220 (50%), Gaps = 21/220 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSLKR 171
            L+ ++  +K G+L A++G SG+GK+TLL  L G L     G+I  NG   R  S    R
Sbjct: 336 ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT-QGEIRVNGIDLRDLSPEAWR 394

Query: 172 KT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME--LGLTRCRNS 228
           K   +V+Q+  L+   T+ E +  A         + EE I   +   +   +      ++
Sbjct: 395 KQISWVSQNPYLFAG-TIRENILLARP-----DASDEEIIAALDQAGLLEFVPKPDGLDT 448

Query: 229 VVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
           V+G  G    G+SGG+ +R+++ + +L   S LLLDEPT+ LD+ T Q I+  L+ LA+ 
Sbjct: 449 VIGEGG---AGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK- 504

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            +TV+   H+         D++VVL  G  +  G   ++ 
Sbjct: 505 QKTVLVITHRL-EDAADA-DRIVVLDNGRLVEQGTHEELS 542

Length = 559

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  111 bits (280), Expect = 9e-26
 Identities = 63/238 (26%), Positives = 112/238 (47%), Gaps = 17/238 (7%)

Query: 99  FATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158
           + +  G   ++   V  ++ VS  ++ GE L ++G SGSGK+TL   LAG L    SG I
Sbjct: 290 YGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPS-SGSI 348

Query: 159 TYNGRQFS------SSLKRKT--GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI 210
            ++G+           L+R+    F      L P +TV + L+    LR+    +  E+ 
Sbjct: 349 IFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEP--LRIHGGGSGAERR 406

Query: 211 EQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS 270
            +   ++  +GL               +SGG+R+RV+I + + + P  L+LDEP S LD 
Sbjct: 407 ARVAELLELVGLPP----EFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDV 462

Query: 271 TTAQRIVATLRGL-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           +   +++  L+ L    G T +   H   + +  + D+V V+ +G  +  G   +V +
Sbjct: 463 SVQAQVLNLLKDLQEELGLTYLFISH-DLAVVRYIADRVAVMYDGRIVEEGPTEKVFE 519

Length = 539

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score =  111 bits (279), Expect = 1e-25
 Identities = 68/232 (29%), Positives = 113/232 (48%), Gaps = 20/232 (8%)

Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR---GKFSGKITYNG---- 162
              V  +  VS  V+PGE+L ++G SGSGK+TL  AL G L       SG++  +G    
Sbjct: 19  GGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLL 78

Query: 163 ----RQFSSSLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV 216
               R+      ++   + QD    L P +T+ + +     LRL  K +R E  ++A  +
Sbjct: 79  GLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--REALRLHGKGSRAEARKRAVEL 136

Query: 217 IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
           + ++GL    +          +SGG R+RV I   + + P  L+ DEPT+ LD TT  +I
Sbjct: 137 LEQVGL---PDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQI 193

Query: 277 VATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           +  L+ L R  G  V+   H     +  + D+VVV+ +G  + +G   +++ 
Sbjct: 194 LDLLKDLQRELGMAVLFITHDLGV-VAELADRVVVMYKGEIVETGPTEEILS 244

Length = 539

>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter

 Score =  105 bits (263), Expect = 1e-25
 Identities = 63/211 (29%), Positives = 105/211 (49%), Gaps = 19/211 (9%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS---- 167
             + L+G++  +  GE + ++GPSG+GK+TLL  +        SG I  NG+  S     
Sbjct: 13  GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPT-SGTIRVNGQDVSDLRGR 71

Query: 168 ---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
               L+RK G V QD  L P   V E +++A  L +     RE + ++    +  +GL+ 
Sbjct: 72  AIPYLRRKIGVVFQDFRLLPDRNVYENVAFA--LEVTGVPPREIR-KRVPAALELVGLSH 128

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
              +     L   +SGGE++RV+I + ++ +P+ L+ DEPT  LD  T   I+  L+ + 
Sbjct: 129 KHRA-----LPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKIN 183

Query: 285 RGGRTVITTIHQPSSRLY-RMFDKVVVLSEG 314
           + G TV+   H  +  L      +V+ L  G
Sbjct: 184 KAGTTVVVATH--AKELVDTTRHRVIALERG 212

FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score =  111 bits (279), Expect = 1e-25
 Identities = 65/207 (31%), Positives = 100/207 (48%), Gaps = 24/207 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSSSLKR 171
            L  VS  V PGE +A++GPSG+GK+TLL  L G       G I  NG       +   R
Sbjct: 337 ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLG-FVDPTEGSIAVNGVPLADADADSWR 395

Query: 172 KT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
               +V Q   L+   T+ E +      RL +    + +I +A   +   GL     ++ 
Sbjct: 396 DQIAWVPQHPFLFAG-TIAENI------RLARPDASDAEIREA---LERAGLDEFVAALP 445

Query: 231 GGPLF------RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
            G          G+SGG+ +R+++ +  L +   LLLDEPT+ LD+ T   ++  LR LA
Sbjct: 446 QGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALA 505

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVL 311
           + GRTV+   H+ +       D++VVL
Sbjct: 506 Q-GRTVLLVTHRLAL-AALA-DRIVVL 529

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score =  107 bits (268), Expect = 1e-25
 Identities = 58/216 (26%), Positives = 109/216 (50%), Gaps = 10/216 (4%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
            ++ +S  V PGE+  +LGP+G+GKTT    + G L     G+IT+NG   S  +K + G
Sbjct: 17  AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE-PTEGEITWNGGPLSQEIKNRIG 75

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
           ++ ++  LYP +TV + L Y A L   K + + E  ++ +  +  L +   +   +    
Sbjct: 76  YLPEERGLYPKMTVEDQLKYLAEL---KGMPKAEIQKKLQAWLERLEIVGKKTKKI---- 128

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
            + +S G ++++     ++  P  L+LDEP SGLD    + +   +  L   G T+I + 
Sbjct: 129 -KELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSS 187

Query: 295 HQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
           H+    +  + D++++L +G  +  G    +   FG
Sbjct: 188 HR-MEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222

Length = 300

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score =  105 bits (265), Expect = 1e-25
 Identities = 65/221 (29%), Positives = 109/221 (49%), Gaps = 20/221 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS-----L 169
            L GVS  V+ GE++A+LG +G+GKTTLL  + G +R + SG+I ++G   +        
Sbjct: 18  ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPR-SGRIIFDGEDITGLPPHERA 76

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EM--VIMELGLTRCR 226
           +    +V +   ++P LTV E L          K  +E  +E+  E+   + E      R
Sbjct: 77  RLGIAYVPEGRRIFPRLTVEENLL-LGAYARRDKEAQERDLEEVYELFPRLKE------R 129

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
            +   G L    SGGE++ ++I + ++  P  LLLDEP+ GL     + I   ++ L + 
Sbjct: 130 RNQRAGTL----SGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKE 185

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           G   I  + Q +     + D+  VL  G  + SG AA+++ 
Sbjct: 186 GGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226

Length = 237

>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein

 Score =  107 bits (270), Expect = 2e-25
 Identities = 73/215 (33%), Positives = 103/215 (47%), Gaps = 28/215 (13%)

Query: 125 PG-ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL--------KRKTGF 175
           PG  + A+ G SGSGKTTL+  +AG  R    G+I  NGR    S         KR+ G+
Sbjct: 21  PGQGVTAIFGRSGSGKTTLIRLIAGLTR-PDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
           V Q+  L+PHL+V   L Y       K+    E+    E VI  LG+         G L 
Sbjct: 80  VFQEARLFPHLSVRGNLRYGM-----KRARPSERRISFERVIELLGI---------GHLL 125

Query: 236 R----GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                 +SGGE++RV+IG+ +L +P  LL+DEP + LD      I+  L  L       I
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185

Query: 292 TTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
             +      + R+ D+VVVL +G    +G  A+V 
Sbjct: 186 LYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVW 220

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354

>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

 Score =  110 bits (277), Expect = 2e-25
 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 26/223 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SSLK 170
           VL  +S  ++PGE +A++GPSGSGK+TL+  L  RL    SG+I  +G   R  S  SL+
Sbjct: 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLL-RLYDPTSGEILIDGIDIRDISLDSLR 402

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL--GLT 223
           ++ G V+QD +L+   T+ E ++           T EE  E  ++      I  L  G  
Sbjct: 403 KRIGIVSQDPLLF-SGTIRENIALGR-----PDATDEEIEEALKLANAHEFIANLPDGY- 455

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
              +++VG      +SGG+R+R++I + +L NP  L+LDE TS LD+ T   I   L+ L
Sbjct: 456 ---DTIVG-ERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKL 511

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            + GRT +   H+ S+   +  D+++VL  G  +  G   +++
Sbjct: 512 LK-GRTTLIIAHRLST--IKNADRIIVLDNGRIVERGTHEELL 551

Length = 567

>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE

 Score =  103 bits (260), Expect = 3e-25
 Identities = 67/208 (32%), Positives = 101/208 (48%), Gaps = 21/208 (10%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-------SS 168
           L+ VS  ++ GE L + GPSG+GKTTLL  L G L     G++   G   +         
Sbjct: 18  LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPS-RGQVRIAGEDVNRLRGRQLPL 76

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLR-LPKKLTREEKIEQAEMVIMELGLTRCRN 227
           L+R+ G V QD  L P  TV E ++    +R   ++  +         V    GL    +
Sbjct: 77  LRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQV----GLEHKAD 132

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
           +    P    +SGGE++RV+I + ++ +P  LL DEPT  LD   ++RI+  L+ L + G
Sbjct: 133 AF---PEQ--LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRG 187

Query: 288 RTVITTIHQPSSRLYRMFDK-VVVLSEG 314
            TVI   H  S  L       V++L +G
Sbjct: 188 TTVIVATHDLS--LVDRVAHRVIILDDG 213

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score =  106 bits (266), Expect = 3e-25
 Identities = 66/211 (31%), Positives = 95/211 (45%), Gaps = 21/211 (9%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS---LKRK 172
           ++GV+  V+ GE+   LGP+G+GKTT +  L   LR   SG     G         ++R 
Sbjct: 9   VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPT-SGTARVAGYDVVREPRKVRRS 67

Query: 173 TGFVTQDDVLYPHLTVLETLS-YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
            G V Q   +   LT  E L     L  LPK    E   E  E+      L    +  VG
Sbjct: 68  IGIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELF----ELGEAADRPVG 123

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                  SGG R+R+ I   ++  P  L LDEPT+GLD  T + I   +R L   G T++
Sbjct: 124 T-----YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178

Query: 292 TTIH------QPSSRLYRMFDKVVVLSEGSP 316
            T H      +   R+  + D   +++EG+P
Sbjct: 179 LTTHYMEEADKLCDRIAII-DHGRIIAEGTP 208

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

 Score =  110 bits (277), Expect = 3e-25
 Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 35/235 (14%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           P +QT+    L   +  +  GE +A+LG SGSGK+TLL  LAG    +  G IT NG + 
Sbjct: 347 PGQQTK---ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQ-QGSITLNGVEI 402

Query: 166 SS----SLKRKTGFVTQDDVLYPHL---TVLETLSYAALLRLPKKLTREEKIEQAEMVIM 218
           +S    +L+     +TQ      HL   T+ + L  A         + EE     + V +
Sbjct: 403 ASLDEQALRETISVLTQR----VHLFSGTLRDNLRLAN-----PDASDEELWAALQQVGL 453

Query: 219 E---LGLTRCRNSVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
           E          N+ +G  G   R +SGGER+R+++ + +L +    LLDEPT GLD  T 
Sbjct: 454 EKLLESAPDGLNTWLGEGG---RRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITE 510

Query: 274 QRIVATLRGLARGGRTVITTIHQPSSRLYRM--FDKVVVLSEGSPIYSGRAAQVM 326
           ++++A L   A  G+T++   H    RL  +   D+++VL  G  I  G  A+++
Sbjct: 511 RQVLALLFEHAE-GKTLLMVTH----RLRGLERMDRIIVLDNGKIIEEGTHAELL 560

Length = 573

>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

 Score =  107 bits (268), Expect = 4e-25
 Identities = 68/268 (25%), Positives = 114/268 (42%), Gaps = 19/268 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK-FSGKITYNGRQFSSS--LKR 171
           VL+ +S  ++ GELLA++G SG GKTTLL A+AG ++    +G+I    R  + +   KR
Sbjct: 20  VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKR 79

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
               + Q+  L+PHL V + +++    +   K    E++  A        L         
Sbjct: 80  GLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADA--------LKLVGLGDAA 131

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR--GGRT 289
             L   +SGG ++R++I + + + P  LLLDEP S LD+     +   +  L       T
Sbjct: 132 AHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELT 191

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF----NLLNPAD 345
           ++   H     L  + DK  ++ +G     G    + D     G+   F    N+L    
Sbjct: 192 ILCVTHDQDDALT-LADKAGIMKDGRLAAHGEPQALYDAPAD-GFAAEFLGAANILPAIA 249

Query: 346 FLLDLANGIAPDVKQDDQLEFHGRLEHH 373
             +  A G+         +   G   H 
Sbjct: 250 LGITEAPGLVDVSCGGAVIFAFGDGRHD 277

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362

>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  103 bits (259), Expect = 5e-25
 Identities = 68/209 (32%), Positives = 103/209 (49%), Gaps = 29/209 (13%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS------ 166
           +S+L GV  +VK GE +A++GPSGSGK+TLL  LAG      SG++   G+         
Sbjct: 23  LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPS-SGEVRLLGQPLHKLDEDA 81

Query: 167 -SSLKRK-TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
            ++L+ +  GFV Q   L P+LT LE ++    LR   + + + +   A+ ++  +GL  
Sbjct: 82  RAALRARHVGFVFQSFHLIPNLTALENVALPLELR--GESSADSR-AGAKALLEAVGL-- 136

Query: 225 CRNSVVGGPLF---RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
                 G  L      +SGGE++RV++ +     P  L  DEPT  LD  T  +I   L 
Sbjct: 137 ------GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLF 190

Query: 282 GLARG-GRTVITTIHQPS-----SRLYRM 304
            L R  G T++   H P       R  R+
Sbjct: 191 ALNRERGTTLVLVTHDPQLAARCDRQLRL 219

Length = 228

>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

 Score =  109 bits (275), Expect = 8e-25
 Identities = 75/229 (32%), Positives = 117/229 (51%), Gaps = 30/229 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFS-SSLK 170
           VL  +S  + PGE +A++G SGSGK+TLL  L G  +    G+I  +G        +SL+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK-PQQGRILLDGVDLNDIDLASLR 546

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-----VIMEL--GLT 223
           R+ G+V QD  L+   ++ E ++           T EE IE A++      I  L  G  
Sbjct: 547 RQVGYVLQDPFLF-SGSIRENIALGNPE-----ATDEEIIEAAQLAGAHEFIENLPMGY- 599

Query: 224 RCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
              ++ VG     G  +SGG+R+R+++ + +L  P  LLLDE TS LD  T   I+  L 
Sbjct: 600 ---DTPVG---EGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLL 653

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
            +   GRTVI   H+ S+   R  D+++VL +G  +  G   +++   G
Sbjct: 654 QI-LQGRTVIIIAHRLST--IRSADRIIVLDQGKIVEQGSHEELLAQGG 699

Length = 709

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score =  102 bits (256), Expect = 1e-24
 Identities = 68/212 (32%), Positives = 112/212 (52%), Gaps = 15/212 (7%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
            K+   V+ L+ ++  +  GE + +LGPSG GKTT L  +AG L    SG+I   GR  +
Sbjct: 7   TKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAG-LEEPTSGRIYIGGRDVT 65

Query: 167 --SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLT 223
                 R    V Q+  LYPH+TV + +++   LR   K   +E++ + AE++ +E  L 
Sbjct: 66  DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLD 125

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
           R           + +SGG+R+RV++G+ ++  P   L+DEP S LD+    ++ A L+ L
Sbjct: 126 R---------KPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRL 176

Query: 284 -ARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
             R G T I   H     +  M D++ V+++G
Sbjct: 177 QQRLGTTTIYVTHDQVEAM-TMADRIAVMNDG 207

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

 Score =  102 bits (256), Expect = 1e-24
 Identities = 70/209 (33%), Positives = 101/209 (48%), Gaps = 23/209 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-------S 168
           L  VS  +  GE + + GPSG+GK+TLL  + G  R    GKI  NG   S         
Sbjct: 18  LRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPT-RGKILVNGHDLSRLKGREIPF 76

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL---TRC 225
           L+R+ G V QD  L P  TV E ++    LR+  K  RE +  +   V+  +GL    R 
Sbjct: 77  LRRQIGVVFQDFRLLPDRTVYENVALP--LRVIGKPPREIR-RRVSEVLDLVGLKHKARA 133

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
             S         +SGGE++RV+I + ++  P+ LL DEPT  LD   +  I+     + R
Sbjct: 134 LPSQ--------LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR 185

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
            G TV+   H     + RM  +V+ L +G
Sbjct: 186 LGTTVLMATHD-LELVNRMRHRVLALEDG 213

Length = 223

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score =  102 bits (256), Expect = 2e-24
 Identities = 69/208 (33%), Positives = 104/208 (50%), Gaps = 14/208 (6%)

Query: 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS 168
           + +  S L  VS  +  GEL+ +LGPSG GKTTLL  +AG       G I  NGR+    
Sbjct: 14  EGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAG-FVTPSRGSIQLNGRRIEGP 72

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-RN 227
              + G V Q++ L P L V++ +++   LR  +K  R E   Q   ++  +GL      
Sbjct: 73  GAER-GVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQ---MLALVGLEGAEHK 128

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-G 286
            +        +SGG R+RV I + + V P  LLLDEP   LD+ T +++   L  L +  
Sbjct: 129 YIW------QLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQET 182

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           G+ V+   H     L+ +  ++VVLS G
Sbjct: 183 GKQVLLITHDIEEALF-LATRLVVLSPG 209

Length = 259

>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system

 Score =  100 bits (252), Expect = 3e-24
 Identities = 65/207 (31%), Positives = 103/207 (49%), Gaps = 19/207 (9%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK 170
           +   +L+ +S  +  GE++A+ G +G+GKTTL   LAG ++   SG I  NG+   +  +
Sbjct: 11  KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKES-SGSILLNGKPIKAKER 69

Query: 171 RKT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           RK+ G+V QD  +   L    T S    L L  K   +   EQAE V+ +L L   +   
Sbjct: 70  RKSIGYVMQD--VDYQLF---TDSVREELLLGLKEL-DAGNEQAETVLKDLDLYALKER- 122

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
              P    +SGG+++R++I   +L     L+ DEPTSGLD    +R+   +R LA  G+ 
Sbjct: 123 --HP--LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178

Query: 290 VITTIHQP------SSRLYRMFDKVVV 310
           VI   H          R+  + +  +V
Sbjct: 179 VIVITHDYEFLAKVCDRVLLLANGAIV 205

Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score =  100 bits (250), Expect = 3e-24
 Identities = 61/196 (31%), Positives = 95/196 (48%), Gaps = 28/196 (14%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS---- 168
             VL G++   + GE+LA+LG +G+GK+TLL  L G LR + SG +  +G     S    
Sbjct: 5   PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQ-SGAVLIDGEPLDYSRKGL 63

Query: 169 --LKRKTGFVTQ---DDVLYPHLTVLETLSYAAL-LRLPKKLTR---EEKIEQAEMVIME 219
              +++ G V Q   D +      V + +++  L L L +        E +       + 
Sbjct: 64  LERRQRVGLVFQDPDDQLFAA--DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR 121

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
              T C            +SGGE+KRV+I   + + P  LLLDEPT+GLD    ++++A 
Sbjct: 122 ERPTHC------------LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAI 169

Query: 280 LRGLARGGRTVITTIH 295
           LR L   G TV+ + H
Sbjct: 170 LRRLRAEGMTVVISTH 185

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score =  100 bits (251), Expect = 6e-24
 Identities = 63/223 (28%), Positives = 101/223 (45%), Gaps = 22/223 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAG--------RLRGK--FSGKITYNGRQ 164
            L  +S  +  GE+ A++GPSG GK+TLL  L             G+    GK  Y+   
Sbjct: 15  ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDV 74

Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
               L+R+ G V Q    +P  ++ + ++Y   LRL     +EE  E+ E  + +  L  
Sbjct: 75  DVLELRRRVGMVFQKPNPFP-GSIYDNVAYG--LRLHGIKLKEELDERVEEALRKAALWD 131

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
               V       G+SGG+++R+ + + +   P  LLLDEPTS LD  +  +I   +  L 
Sbjct: 132 ---EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELK 188

Query: 285 RGGRTVITT--IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           +    VI T  + Q +    R+ D+   L  G  +  G   Q+
Sbjct: 189 KEYTIVIVTHNMQQAA----RVADRTAFLLNGRLVEFGPTEQI 227

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family

 Score =  106 bits (268), Expect = 6e-24
 Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 33/235 (14%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG--- 162
           P ++T     L+ VS  ++PGE +A++G  GSGK+TLL  L G L     G +  +G   
Sbjct: 474 PGQET---PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLG-LYQPTEGSVLLDGVDI 529

Query: 163 RQFSSS-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
           RQ   + L+R  G+V QD  L+ + T+ + ++  A          EE +  AE+     G
Sbjct: 530 RQIDPADLRRNIGYVPQDPRLF-YGTLRDNIALGAPY-----ADDEEILRAAELA----G 579

Query: 222 LTRCRNS-------VVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272
           +T             +G  G   R +SGG+R+ V++ + +L +P  LLLDEPTS +D+ +
Sbjct: 580 VTEFVRRHPDGLDMQIGERG---RSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636

Query: 273 AQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            +R    L+     G+T++   H+ S  L  + D+++V+  G  +  G   QV++
Sbjct: 637 EERFKDRLKRWL-AGKTLVLVTHRTS--LLDLVDRIIVMDNGRIVADGPKDQVLE 688

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694

>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

 Score = 99.2 bits (248), Expect = 3e-23
 Identities = 73/241 (30%), Positives = 110/241 (45%), Gaps = 20/241 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF-SGKITYNGRQFSSSLK--- 170
           +L GV+  VK GE+ A++GP+GSGK+TL   + G  + +   G+I ++G      +    
Sbjct: 19  ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE----DILELS 74

Query: 171 -----RKTGFVT-QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
                R   F+  Q  V  P +T  + L  A   R   +    E I++ +     LGL  
Sbjct: 75  PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDE 134

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA-TLRGL 283
                +   +  G SGGE+KR  I Q +L+ P   +LDEP SGLD   A +IVA  +  L
Sbjct: 135 ---EFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD-IDALKIVAEGINAL 190

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNP 343
              GR V+   H      Y   DKV VL +G  + SG   ++ +     GY     ++  
Sbjct: 191 REEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSG-DPELAEELEEKGYDWLKEVVGG 249

Query: 344 A 344
            
Sbjct: 250 E 250

Length = 251

>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C

 Score = 98.3 bits (245), Expect = 4e-23
 Identities = 65/224 (29%), Positives = 122/224 (54%), Gaps = 26/224 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF----SSSLK 170
           +L+ +S  +KPGE++ ++G SGSGK+TL T L  R     +G++  +G        + L+
Sbjct: 17  ILDNISLRIKPGEVVGIVGRSGSGKSTL-TKLIQRFYVPENGRVLVDGHDLALADPAWLR 75

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMELGLTRC 225
           R+ G V Q++VL+ + ++ + ++ A        ++ E  IE A++      I EL     
Sbjct: 76  RQVGVVLQENVLF-NRSIRDNIALAD-----PGMSMERVIEAAKLAGAHDFISELPEGY- 128

Query: 226 RNSVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
            +++VG  G    G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  +
Sbjct: 129 -DTIVGEQGA---GLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI 184

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
              GRTVI   H+ S+   +  D+++V+ +G  +  G   +++ 
Sbjct: 185 C-AGRTVIIIAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225

The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 98.4 bits (246), Expect = 4e-23
 Identities = 68/228 (29%), Positives = 113/228 (49%), Gaps = 19/228 (8%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
            K  +   V+N VS  V  GE++ +LGP+G+GKTT    + G +R   SGKI  +    +
Sbjct: 11  AKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPD-SGKILLDDEDIT 69

Query: 167 S-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
                   +   G++ Q+  ++  LTV + +  A L    K L + E+ E+ + ++ E  
Sbjct: 70  KLPMHKRARLGIGYLPQEASIFRKLTVEDNIM-AVLEIREKDLKKAERKEELDALLEEFH 128

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA---QRIVA 278
           +T  R+S     L    SGGER+RV I + +  NP  +LLDEP +G+D       QRI+ 
Sbjct: 129 ITHLRDSK-AYSL----SGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183

Query: 279 TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            L+    G   V+ T H     L  + D+  ++S+G  +  G   +++
Sbjct: 184 HLKDRGIG---VLITDHNVRETL-DICDRAYIISDGKVLAEGSPEEIV 227

Length = 243

>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

 Score =  100 bits (250), Expect = 5e-23
 Identities = 62/206 (30%), Positives = 107/206 (51%), Gaps = 15/206 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
            ++ V+  ++ GE L ++GPSGSGKTT L  +  RL    SG+I  +G   S      L+
Sbjct: 16  AVDDVNLTIEEGEFLVLIGPSGSGKTTTL-KMINRLIEPTSGEILIDGEDISDLDPVELR 74

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           RK G+V Q   L+PHLTV E ++    LL   K+  ++   E  ++V ++      R   
Sbjct: 75  RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADR--- 131

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GR 288
                   +SGG+++RV + + +  +P  LL+DEP   LD  T +++   ++ L +  G+
Sbjct: 132 ----YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGK 187

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEG 314
           T++   H     L ++ D++ V+  G
Sbjct: 188 TIVFVTHDIDEAL-KLADRIAVMDAG 212

Length = 309

>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C

 Score = 97.3 bits (243), Expect = 7e-23
 Identities = 74/219 (33%), Positives = 117/219 (53%), Gaps = 27/219 (12%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG--- 162
           PN++      L+ VS  ++ GE +A++G  GSGK+TLL  LAG L    SG +  +G   
Sbjct: 13  PNQEIPA---LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAG-LYKPTSGSVLLDGTDI 68

Query: 163 RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
           RQ   + L+R  G+V QD  L+ + T+ + ++  A L        E  +  AE+     G
Sbjct: 69  RQLDPADLRRNIGYVPQDVTLF-YGTLRDNITLGAPL-----ADDERILRAAEL----AG 118

Query: 222 LTR-CRNSVVG-----GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           +T        G     G   RG+SGG+R+ V++ + +L +P  LLLDEPTS +D  + +R
Sbjct: 119 VTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEER 178

Query: 276 IVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           +   LR L  G +T+I   H+PS  L  + D+++V+  G
Sbjct: 179 LKERLRQLL-GDKTLIIITHRPS--LLDLVDRIIVMDSG 214

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220

>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 96.8 bits (241), Expect = 8e-23
 Identities = 53/161 (32%), Positives = 88/161 (54%), Gaps = 17/161 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF--SGKITYNGRQFSS--SLK 170
           +L  V+  +  GE++ ++GPSG GK+TLL+ + G L G+F  +G++  N ++     + +
Sbjct: 17  LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQ 76

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--CRNS 228
           R+ G + QD +L+PHL+V + L +A    LP  L    +   A   +   GL     ++ 
Sbjct: 77  RQIGILFQDALLFPHLSVGQNLLFA----LPATLKGNARRNAANAALERSGLDGAFHQDP 132

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
                    +SGG+R RV++ + +L  P  LLLDEP S LD
Sbjct: 133 AT-------LSGGQRARVALLRALLAQPKALLLDEPFSRLD 166

Length = 213

>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 97.9 bits (244), Expect = 1e-22
 Identities = 59/199 (29%), Positives = 102/199 (51%), Gaps = 25/199 (12%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG------------ 162
           VL GVS     G++++++G SGSGK+T L  +   L    +G I  NG            
Sbjct: 21  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCI-NFLEKPSAGSIRVNGEEIRLKRDKDGQ 79

Query: 163 -----RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI 217
                ++    L+ + G V Q   L+ H+TVLE +  A +  L   +++ E IE+AE  +
Sbjct: 80  LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYL 137

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            ++G+    ++    P    +SGG+++RV+I + + + P  +L DEPTS LD      ++
Sbjct: 138 AKVGIAEKADAY---PAH--LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVL 192

Query: 278 ATLRGLARGGRTVITTIHQ 296
             ++ LA  GRT++   H+
Sbjct: 193 KVMQDLAEEGRTMVVVTHE 211

Length = 256

>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional

 Score = 97.0 bits (242), Expect = 1e-22
 Identities = 68/185 (36%), Positives = 97/185 (52%), Gaps = 27/185 (14%)

Query: 124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----------LKRKT 173
             GE L +LGPSG+GK++LL  L   L    SG +   G  F  S          L+R  
Sbjct: 26  PQGETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNV 84

Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKK---LTREEKIEQAEMVIMELGLTRCRNSVV 230
           G V Q   L+PHLTV + L  A     P +   L++++ + +AE ++  L L        
Sbjct: 85  GMVFQQYNLWPHLTVQQNLIEA-----PCRVLGLSKDQALARAEKLLERLRLK---PYAD 136

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD-STTAQRIVATLRGLARGGRT 289
             PL   +SGG+++RV+I + +++ P  LL DEPT+ LD   TAQ IV+ +R LA  G T
Sbjct: 137 RFPLH--LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQ-IVSIIRELAETGIT 193

Query: 290 -VITT 293
            VI T
Sbjct: 194 QVIVT 198

Length = 242

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 96.9 bits (241), Expect = 2e-22
 Identities = 60/217 (27%), Positives = 113/217 (52%), Gaps = 14/217 (6%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-----SSL 169
           V+  VS  V  GE++ +LGP+G+GKTT    + G +  + +G I  +    S     +  
Sbjct: 18  VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVG-IVPRDAGNIIIDDEDISLLPLHARA 76

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           +R  G++ Q+  ++  L+V + L   A+L++   L+ E++ ++A  ++ E  +   R+S 
Sbjct: 77  RRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQREDRANELMEEFHIEHLRDS- 133

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
               + + +SGGER+RV I + +  NP  +LLDEP +G+D  +   I   +  L   G  
Sbjct: 134 ----MGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLG 189

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           V+ T H     L  + ++  ++S+G  I  G   +++
Sbjct: 190 VLITDHNVRETL-AVCERAYIVSQGHLIAHGTPTEIL 225

Length = 241

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 97.1 bits (243), Expect = 2e-22
 Identities = 69/234 (29%), Positives = 107/234 (45%), Gaps = 43/234 (18%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           +L+ VS  ++PGE++A+LGP+G+GK+TLL AL+G L    SG++  NGR  +     +  
Sbjct: 17  LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSP-DSGEVRLNGRPLADWSPAE-- 73

Query: 175 FVTQDDVLYPHLTVL---ETLSYA-------ALLRLPKKLTREEKIEQAEMVIMELGLTR 224
                  L     VL    +LS+        A+ R P  L+R E        + ++ L  
Sbjct: 74  -------LARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH 126

Query: 225 CRNSVVGGPLFRGISGGERKRV----------SIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
                     +  +SGGE++RV                   P  LLLDEPTS LD     
Sbjct: 127 LAGR-----DYPQLSGGEQQRVQLARVLAQLWEPDGP----PRWLLLDEPTSALDLAHQH 177

Query: 275 RIVATLRGLAR-GGRTVITTIHQPSSRLYRMF-DKVVVLSEGSPIYSGRAAQVM 326
            ++   R LA   G  VI  +H  +  L   + D++V+L +G  +  G  A+V+
Sbjct: 178 HVLRLARQLAHERGLAVIVVLHDLN--LAARYADRIVLLHQGRLVADGTPAEVL 229

Length = 258

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 95.9 bits (239), Expect = 2e-22
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 22/212 (10%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSLKRK 172
           + GVS  V+ GE+  +LGP+G+GKTT +  L   L+   SG+ T  G    +    ++R+
Sbjct: 16  VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPT-SGRATVAGHDVVREPREVRRR 74

Query: 173 TGFVTQDDVLYPHLTVLETLS-YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
            G V QD  +   LT  E L  +A L  +P      E+ E+ + ++  +GL    + +V 
Sbjct: 75  IGIVFQDLSVDDELTGWENLYIHARLYGVP----GAERRERIDELLDFVGLLEAADRLV- 129

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRTV 290
               +  SGG R+R+ I + ++  P  L LDEPT GLD  T   +   +  L    G T+
Sbjct: 130 ----KTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185

Query: 291 ITTIH------QPSSRLYRMFDKVVVLSEGSP 316
           + T H      Q   R+  + D   +++EG+P
Sbjct: 186 LLTTHYMEEAEQLCDRVAII-DHGRIIAEGTP 216

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

 Score =  100 bits (252), Expect = 2e-22
 Identities = 79/233 (33%), Positives = 120/233 (51%), Gaps = 38/233 (16%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNGRQF----S 166
           +LNG+S  +  G+ +A++G SG+GK+T+L     RL  +F    SG IT +G+       
Sbjct: 278 ILNGISFTIPLGKTVAIVGESGAGKSTIL-----RLLFRFYDVNSGSITIDGQDIRDVTQ 332

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-----VIMEL- 220
            SL+R  G V QD VL+ + T+   + Y          T EE    AE       I  L 
Sbjct: 333 QSLRRAIGIVPQDTVLF-NDTIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQSLP 386

Query: 221 -GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            G     ++ VG    RG  +SGGE++RV+I + +L NP  L+LDE TS LD+ T Q I 
Sbjct: 387 EGY----DTGVG---ERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQ 439

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
           A LR ++  GRT +   H+ S+ +    D+++VL  G  +  G   +++   G
Sbjct: 440 AALREVSA-GRTTLVIAHRLSTIIDA--DEIIVLDNGRIVERGTHEELLAAGG 489

Length = 497

>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C

 Score = 94.2 bits (235), Expect = 3e-22
 Identities = 56/204 (27%), Positives = 89/204 (43%), Gaps = 53/204 (25%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSLKR 171
           VL  VS  ++PGE LA++GPSGSGK+TL   + G LR   SG++  +G    Q+  +   
Sbjct: 17  VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPT-SGRVRLDGADISQWDPNELG 75

Query: 172 KT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
              G++ QDD L+   ++ E +                                      
Sbjct: 76  DHVGYLPQDDELFSG-SIAENI-------------------------------------- 96

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
                  +SGG+R+R+ + + +  NP  L+LDEP S LD    + +   +  L   G T 
Sbjct: 97  -------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATR 149

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEG 314
           I   H+P        D+++VL +G
Sbjct: 150 IVIAHRPE--TLASADRILVLEDG 171

This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173

>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

 Score = 96.6 bits (241), Expect = 3e-22
 Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 20/219 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF-----SSSL 169
           +L  +S  V PGE  A++GP+G+GKTTLL+ L G      SG +T  GR+F        L
Sbjct: 46  ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP-PSSGDVTLLGRRFGKGETIFEL 104

Query: 170 KRKTGFVT--QDDVLYPHLTVLET-LS--YAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
           +++ G V+    +      TV +  LS  +A++    + LT E+    A+ ++  LG   
Sbjct: 105 RKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDL-AAAQWLLELLGAKH 163

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             +       F  +S GE++RV I + ++ +P  L+LDEP  GLD    ++++  L  LA
Sbjct: 164 LADR-----PFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELA 218

Query: 285 --RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
              G   ++   H         F   ++L EG  +  G+
Sbjct: 219 ASPGAPALLFVTHHAEEIP-PCFTHRLLLKEGEVVAQGK 256

Length = 257

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 94.1 bits (235), Expect = 8e-22
 Identities = 70/220 (31%), Positives = 103/220 (46%), Gaps = 24/220 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS-----L 169
           +L GVS  V  GE+  +LG +G GKTTLL  L G L  K SG I  +G   +        
Sbjct: 15  ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVK-SGSIRLDGEDITKLPPHERA 73

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI--EQAEM--VIMELGLTRC 225
           +    +V Q   ++P LTV E L    L  L     R  KI  E  E+  V+ E+ L R 
Sbjct: 74  RAGIAYVPQGREIFPRLTVEENL----LTGLAALPRRSRKIPDEIYELFPVLKEM-LGR- 127

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
                GG L    SGG++++++I + ++  P  LLLDEPT G+  +  + I   +R L  
Sbjct: 128 ----RGGDL----SGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRA 179

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            G   I  + Q       + D+  V+  G  + SG   ++
Sbjct: 180 EGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 95.5 bits (238), Expect = 8e-22
 Identities = 83/244 (34%), Positives = 120/244 (49%), Gaps = 34/244 (13%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK--- 170
             L G++   + GE++A+LGP+G+GK+TL     G L+   SG++   G       K   
Sbjct: 16  EALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPT-SGEVLIKGEPIKYDKKSLL 74

Query: 171 --RKT-GFVTQ--DDVLY-PHLTVLETLSYAAL-LRLPKKLTREEKIEQAEMVIMELGLT 223
             RKT G V Q  DD L+ P  TV E +++  L L L K+   +   E  + V ME G  
Sbjct: 75  EVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGME-GFE 131

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                    P    +SGG++KRV+I   + + P  ++LDEPTSGLD   A +I+  L  L
Sbjct: 132 N------KPP--HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL 183

Query: 284 ARGGRTVITTIHQ----PSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFN 339
            + G T+I + H     P   +Y   DKV V+S+G  I  G   +V   F  I  +   N
Sbjct: 184 NKEGITIIISTHDVDLVP---VYA--DKVYVMSDGKIIKEGTPKEV---FSDIETIRKAN 235

Query: 340 LLNP 343
           L  P
Sbjct: 236 LRLP 239

Length = 275

>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 63/213 (29%), Positives = 97/213 (45%), Gaps = 31/213 (14%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           VL  +S  +KPGE + ++G +GSGK++LL AL  RL    SG I  +G   S      L+
Sbjct: 19  VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALF-RLVELSSGSILIDGVDISKIGLHDLR 77

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-------EMVIMELGLT 223
            +   + QD VL+   T+   L        P     +E++ QA       E V    G  
Sbjct: 78  SRISIIPQDPVLFSG-TIRSNLD-------PFGEYSDEELWQALERVGLKEFVESLPGGL 129

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                  G      +S G+R+ + + + +L     L+LDE T+ +D  T   I  T+R  
Sbjct: 130 DTVVEEGGE----NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE- 184

Query: 284 ARGGRTVITTIHQPSSRLYRM--FDKVVVLSEG 314
           A    TV+T  H    RL  +   D+++VL +G
Sbjct: 185 AFKDCTVLTIAH----RLDTIIDSDRILVLDKG 213

The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221

>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 94.5 bits (235), Expect = 1e-21
 Identities = 68/211 (32%), Positives = 106/211 (50%), Gaps = 25/211 (11%)

Query: 126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----------LKRKTGF 175
           GE L +LGPSG+GK++LL  L   L    SG +   G  F  S          L+R  G 
Sbjct: 28  GETLVLLGPSGAGKSSLLRVL-NLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGM 86

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKK---LTREEKIEQAEMVIMELGLTRCRNSVVGG 232
           V Q   L+PHLTV E L  A     P +   L++++ + +AE ++  L L    +     
Sbjct: 87  VFQQYNLWPHLTVQENLIEA-----PCRVLGLSKDQALARAEKLLKRLRLKPYADRY--- 138

Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
           PL   +SGG+++RV+I + +++ P  LL DEPT+ LD     +IV+ ++ LA  G T + 
Sbjct: 139 PLH--LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVI 196

Query: 293 TIHQPSSRLYRMFDKVVVLSEGSPIYSGRAA 323
             H+      +   +VV +  G  +  G A+
Sbjct: 197 VTHEVEVA-RKTASRVVYMENGHIVEQGDAS 226

Length = 242

>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 93.9 bits (234), Expect = 2e-21
 Identities = 67/234 (28%), Positives = 116/234 (49%), Gaps = 29/234 (12%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
           +K   T  VL+ VS  +  G + +++GP+G+GK+TLL+ +  RL  K SG+IT +G + +
Sbjct: 8   SKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLS-MMSRLLKKDSGEITIDGLELT 66

Query: 167 SS----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP---KKLTRE--EKIEQAEMVI 217
           S+    L +K   + Q++ +   LTV + + +    R P    +LT+E    I +A   I
Sbjct: 67  STPSKELAKKLSILKQENHINSRLTVRDLVGFG---RFPYSQGRLTKEDRRIINEA---I 120

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
             L L    +  +       +SGG+R+R  I   +  +   +LLDEP + LD   + +I+
Sbjct: 121 EYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIM 175

Query: 278 ATLRGLARG-GRTVITTIH---QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
             LR LA   G+T++  +H     S       D +V L  G  +  G   +++ 
Sbjct: 176 KILRRLADELGKTIVVVLHDINFAS----CYSDHIVALKNGKVVKQGSPDEIIQ 225

Length = 252

>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional

 Score = 93.0 bits (231), Expect = 3e-21
 Identities = 72/203 (35%), Positives = 102/203 (50%), Gaps = 26/203 (12%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSSSLK- 170
           VL+ VS  +  GE++A++G SGSGK+TLL  L G L    SG + +NG+   + SS+ K 
Sbjct: 24  VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGG-LDTPTSGDVIFNGQPMSKLSSAAKA 82

Query: 171 ----RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL---T 223
               +K GF+ Q   L P  T LE     A+  L  K    E   +A  ++  +GL    
Sbjct: 83  ELRNQKLGFIYQFHHLLPDFTALEN---VAMPLLIGKKKPAEINSRALEMLAAVGLEHRA 139

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
             R S         +SGGER+RV+I + ++ NP  +L DEPT  LD+  A  I   L  L
Sbjct: 140 NHRPS--------ELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGEL 191

Query: 284 ARGGRT---VITTIHQPSSRLYR 303
            R   T   V+T   Q + R+ R
Sbjct: 192 NRLQGTAFLVVTHDLQLAKRMSR 214

Length = 233

>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 66/209 (31%), Positives = 105/209 (50%), Gaps = 15/209 (7%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--LKRKTGFVTQDD 180
           V  GE++A+LGPSG+GK+TLL  +AG      SG+I  NG   ++S   +R    + Q++
Sbjct: 22  VPAGEIVAILGPSGAGKSTLLNLIAGFETPA-SGEILINGVDHTASPPAERPVSMLFQEN 80

Query: 181 VLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239
            L+ HLTV + +    L   P  KL  E++ E+ E    ++GL           L   +S
Sbjct: 81  NLFAHLTVAQNI---GLGLSPGLKLNAEQR-EKVEAAAAQVGLAGFLKR-----LPGELS 131

Query: 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPS 298
           GG+R+RV++ + ++     LLLDEP S LD      ++A +  L      T++   H P 
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE 191

Query: 299 SRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
               R+ D+VV L  G     G   +++ 
Sbjct: 192 D-AARIADRVVFLDNGRIAAQGSTQELLS 219

Length = 231

>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit

 Score = 97.4 bits (243), Expect = 4e-21
 Identities = 73/193 (37%), Positives = 100/193 (51%), Gaps = 22/193 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           VL+GVS  + PGE +A+LGPSGSGK+TLL  LAG L     G++T +G   SS     ++
Sbjct: 350 VLDGVSLDLPPGERVAILGPSGSGKSTLLATLAG-LLDPLQGEVTLDGVPVSSLDQDEVR 408

Query: 171 RKTGFVTQDDVLYPHL---TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR- 226
           R+     QD     HL   TV E L  A         T EE     E V +   L     
Sbjct: 409 RRVSVCAQD----AHLFDTTVRENLRLAR-----PDATDEELWAALERVGLADWLRALPD 459

Query: 227 --NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             ++V+G    R +SGGER+R+++ + +L +   LLLDEPT  LD+ TA  ++  L   A
Sbjct: 460 GLDTVLGEGGAR-LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLA-A 517

Query: 285 RGGRTVITTIHQP 297
             GRTV+   H  
Sbjct: 518 LSGRTVVLITHHL 530

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 92.1 bits (229), Expect = 4e-21
 Identities = 64/215 (29%), Positives = 105/215 (48%), Gaps = 16/215 (7%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS 167
           K+    + +N +S  V    +  +LGP+G+GK+TLL  + G LR   SG+I ++G  ++ 
Sbjct: 8   KRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR-PTSGEIIFDGHPWTR 66

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLR-LPKKLTREEKIEQAEMVIMELGLTRCR 226
               K G + +   LY +LT  E L     L  LP     + +I++   V+  + LT   
Sbjct: 67  KDLHKIGSLIESPPLYENLTARENLKVHTTLLGLP-----DSRIDE---VLNIVDLTNTG 118

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
                       S G ++R+ I   +L +P  L+LDEPT+GLD    Q +   +R     
Sbjct: 119 KKKAKQ-----FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
           G TVI + H   S + ++ D + ++SEG   Y G+
Sbjct: 174 GITVILSSH-ILSEVQQLADHIGIISEGVLGYQGK 207

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 97.2 bits (243), Expect = 5e-21
 Identities = 71/231 (30%), Positives = 116/231 (50%), Gaps = 35/231 (15%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFS- 166
           +   VL G+S  +K GE +A+LG +G GK+TLL  L  R      G+I  NG+    +S 
Sbjct: 351 QPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT-RAWDPQQGEILLNGQPIADYSE 409

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLR----LPKKLTREEKIEQAEMVIMELGL 222
           ++L++    V+Q      HL       ++A LR    L      +E + +   V+ ++GL
Sbjct: 410 AALRQAISVVSQR----VHL-------FSATLRDNLLLAAPNASDEALIE---VLQQVGL 455

Query: 223 TRCRNSVVG-----GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            +      G     G   R +SGGE++R+ I + +L +   LLLDEPT GLD+ T ++I+
Sbjct: 456 EKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQIL 515

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRM--FDKVVVLSEGSPIYSGRAAQVM 326
             L   A+  +TV+   H    RL  +  FD++ V+  G  I  G   +++
Sbjct: 516 ELLAEHAQ-NKTVLMITH----RLTGLEQFDRICVMDNGQIIEQGTHQELL 561

Length = 574

>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed

 Score = 95.7 bits (238), Expect = 5e-21
 Identities = 63/218 (28%), Positives = 103/218 (47%), Gaps = 10/218 (4%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----S 168
            +VL+GV   V+ G L+ ++GP+G+GKTTLL A+ G L    +G +   G    +    +
Sbjct: 16  TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPT-AGTVLVAGDDVEALSARA 74

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
             R+   V QD  L     V + +      R P   +R +   + +   +E  + R   +
Sbjct: 75  ASRRVASVPQDTSLSFEFDVRQVVEMG---RTPH-RSRFDTWTETDRAAVERAMERTGVA 130

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
                    +SGGER+RV + + +      LLLDEPT+ LD     R +  +R L   G+
Sbjct: 131 QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGK 190

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           T +  IH       R  D++V+L++G    +G  A V+
Sbjct: 191 TAVAAIHD-LDLAARYCDELVLLADGRVRAAGPPADVL 227

Length = 402

>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 93.8 bits (234), Expect = 6e-21
 Identities = 73/257 (28%), Positives = 115/257 (44%), Gaps = 42/257 (16%)

Query: 90  NLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR 149
           NL  S    F T  G        V  ++GVS  +K GE+L ++G SGSGK+ L  A+ G 
Sbjct: 6   NLSVS----FPTDAG-------VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGL 54

Query: 150 LRGKF----SGKITYNGR---QFSSSLKRK-----TGFVTQD--DVLYPHLTVLETLSYA 195
           L         G+I ++G+     S    RK        + QD    L P +T+ + +   
Sbjct: 55  LPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQI-AE 113

Query: 196 ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG------ISGGERKRVSIG 249
            L    K L+++E  E+A  ++  +G+          P  R       +SGG R+RV I 
Sbjct: 114 VLRLHGKGLSKKEAKERAIELLELVGIPD--------PERRLKSYPHELSGGMRQRVMIA 165

Query: 250 QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKV 308
             + +NP  L+ DEPT+ LD T   +I+  L+ L R  G  +I   H     +  + D+V
Sbjct: 166 MALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGV-VAEIADRV 224

Query: 309 VVLSEGSPIYSGRAAQV 325
            V+  G  +  G   ++
Sbjct: 225 AVMYAGRIVEEGPVEEI 241

Length = 316

>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional

 Score = 94.4 bits (235), Expect = 7e-21
 Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 21/210 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKRK 172
           VLN +S  +  G+++A+LGPSGSGKTTLL  +AG L  + SG I ++G   S   +  RK
Sbjct: 17  VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAG-LEHQTSGHIRFHGTDVSRLHARDRK 75

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTRE----EKIEQAEMVIMEL-GLTRCRN 227
            GFV Q   L+ H+TV + +++  L  LP+   RE      I+     ++E+  L    +
Sbjct: 76  VGFVFQHYALFRHMTVFDNIAF-GLTVLPR---RERPNAAAIKAKVTQLLEMVQLAHLAD 131

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
                     +SGG+++RV++ + + V P  LLLDEP   LD+   + +   LR L    
Sbjct: 132 RYPA-----QLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEEL 186

Query: 288 R--TVITTIHQPSSRLYRMFDKVVVLSEGS 315
           +  +V  T  Q  +    + D+VVV+S+G+
Sbjct: 187 KFTSVFVTHDQEEA--MEVADRVVVMSQGN 214

Length = 353

>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional

 Score = 90.7 bits (226), Expect = 8e-21
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 20/187 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-QFSSSLKRKT 173
           + +G+S  +  GE L + GP+GSGKTTLL  +AG L    +G I  +G       +    
Sbjct: 17  LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP-PAAGTIKLDGGDIDDPDVAEAC 75

Query: 174 GFVTQDDVLYPHLTVLETLSY-AALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
            ++   + + P LTV E L + AA L        E  I  A +  + L         +  
Sbjct: 76  HYLGHRNAMKPALTVAENLEFWAAFLG-----GEELDIAAA-LEAVGLAP-------LAH 122

Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL--RGLARGGRTV 290
             F  +S G+++RV++ + ++ N    +LDEPT+ LD+  A  + A L    LA+GG  +
Sbjct: 123 LPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA-AAVALFAELIRAHLAQGGIVI 181

Query: 291 ITTIHQP 297
             T H P
Sbjct: 182 AAT-HIP 187

Length = 207

>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system

 Score = 91.0 bits (226), Expect = 9e-21
 Identities = 61/204 (29%), Positives = 95/204 (46%), Gaps = 19/204 (9%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ--FSSSLKRKTGFVTQDD 180
              GE+ A++GPSGSGK+TLL  +AG    + SG++  NG     +    R    + Q++
Sbjct: 21  FAQGEITAIVGPSGSGKSTLLNLIAGFETPQ-SGRVLINGVDVTAAPPADRPVSMLFQEN 79

Query: 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR---G 237
            L+ HLTV + +    L   P      E  +  E+ +  +GL         G   R    
Sbjct: 80  NLFAHLTVEQNV---GLGLSPGLKLTAEDRQAIEVALARVGL--------AGLEKRLPGE 128

Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQ 296
           +SGGER+RV++ + ++ +   LLLDEP + LD      ++  +  L      TV+   HQ
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188

Query: 297 PSSRLYRMFDKVVVLSEGSPIYSG 320
           P     R+  +VV L  G     G
Sbjct: 189 PEDAK-RLAQRVVFLDNGRIAAQG 211

Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional

 Score = 91.0 bits (226), Expect = 1e-20
 Identities = 69/195 (35%), Positives = 102/195 (52%), Gaps = 20/195 (10%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS------ 166
           +S+L GV  +VK GE +A++G SGSGK+TLL  LAG   G  SG+++  G+         
Sbjct: 23  LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGS-SGEVSLVGQPLHQMDEEA 81

Query: 167 -SSLK-RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-T 223
            + L+ +  GFV Q  +L P L  LE +   ALLR   + +R+ +   A+ ++ +LGL  
Sbjct: 82  RAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR--GESSRQSR-NGAKALLEQLGLGK 138

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
           R  +      L   +SGGE++RV++ +     P  L  DEPT  LD  T  +I   L  L
Sbjct: 139 RLDH------LPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSL 192

Query: 284 ARG-GRTVITTIHQP 297
            R  G T+I   H  
Sbjct: 193 NREHGTTLILVTHDL 207

Length = 228

>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional

 Score = 93.9 bits (234), Expect = 1e-20
 Identities = 73/210 (34%), Positives = 108/210 (51%), Gaps = 27/210 (12%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--SLKRKTGFVTQDD 180
           +  GE +  +GPSG GK+TLL  +AG L    SG +    ++ +     +R  G V Q  
Sbjct: 26  IHEGEFVVFVGPSGCGKSTLLRMIAG-LEDITSGDLFIGEKRMNDVPPAERGVGMVFQSY 84

Query: 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG--LTRCRNSVVGGPLFRGI 238
            LYPHL+V E +S+   L   KK    +++ Q    +++L   L R        P  + +
Sbjct: 85  ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAE-VLQLAHLLDR-------KP--KAL 134

Query: 239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI---VATLRGLARGGRTVITTIH 295
           SGG+R+RV+IG+ ++  PS  LLDEP S LD+  A R+   +   R   R GRT+I   H
Sbjct: 135 SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA--ALRVQMRIEISRLHKRLGRTMIYVTH 192

Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
                +  + DK+VVL       +GR AQV
Sbjct: 193 DQVEAM-TLADKIVVLD------AGRVAQV 215

Length = 369

>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein

 Score = 90.3 bits (224), Expect = 1e-20
 Identities = 58/199 (29%), Positives = 100/199 (50%), Gaps = 21/199 (10%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--LKRKTGFVTQDD 180
           V  GE++A++GPSG+GK+TLL  +AG +    SG I  N +  +     +R    + Q++
Sbjct: 21  VADGEIVAIMGPSGAGKSTLLNLIAGFIE-PASGSIKVNDQSHTGLAPYQRPVSMLFQEN 79

Query: 181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG----LTRCRNSVVGGPLFR 236
            L+ HLTV + +     L    KL  E++ E+      ++G    L R            
Sbjct: 80  NLFAHLTVRQNIGLG--LHPGLKLNAEQQ-EKVVDAAQQVGIADYLDRLPEQ-------- 128

Query: 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVITTIH 295
            +SGG+R+RV++ + ++     LLLDEP S LD    + ++A ++ L     RT++   H
Sbjct: 129 -LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTH 187

Query: 296 QPSSRLYRMFDKVVVLSEG 314
             S     +  ++ V+S+G
Sbjct: 188 HLSD-ARAIASQIAVVSQG 205

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 90.8 bits (226), Expect = 2e-20
 Identities = 61/206 (29%), Positives = 103/206 (50%), Gaps = 15/206 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
            +N ++  +  GE L ++GPSGSGKTT +  +  RL    SG+I  +G          L+
Sbjct: 16  AVNNLNLEIAKGEFLVLIGPSGSGKTTTMK-MINRLIEPTSGEIFIDGEDIREQDPVELR 74

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           RK G+V Q   L+PH+TV E ++    LL+ PK+  RE   E   +V ++      R   
Sbjct: 75  RKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYP- 133

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GR 288
                   +SGG+++RV + + +  +P  LL+DEP   LD  T  ++    + L +  G+
Sbjct: 134 ------HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGK 187

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEG 314
           T++   H       R+ D++ ++  G
Sbjct: 188 TIVFVTHDIDEAF-RLADRIAIMKNG 212

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 65/229 (28%), Positives = 113/229 (49%), Gaps = 20/229 (8%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
               T TV+ L+ VS  +  GE+  ++G SG+GK+TLL  L   L    SG +  +G+  
Sbjct: 12  GQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLR-LINLLERPTSGSVFVDGQDL 70

Query: 166 SS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIM 218
           ++        L++K G + Q   L    TV E +++   L L   + + E  ++   ++ 
Sbjct: 71  TALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP--LEL-AGVPKAEIKQRVAELLE 127

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            +GL+   +     P    +SGG+++RV+I + +  NP  LL DE TS LD  T Q I+ 
Sbjct: 128 LVGLSDKADRY---PA--QLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILE 182

Query: 279 TLRGL-ARGGRTVITTIHQPSSRLYRMF-DKVVVLSEGSPIYSGRAAQV 325
            L+ +    G T++   H+    + +   D+V VL +G  +  G  ++V
Sbjct: 183 LLKDINRELGLTIVLITHEM--EVVKRICDRVAVLDQGRLVEEGTVSEV 229

Length = 339

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 90.5 bits (225), Expect = 2e-20
 Identities = 67/220 (30%), Positives = 107/220 (48%), Gaps = 17/220 (7%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--- 163
            ++ R V  L G+S  ++ GE++  +GP+G+GKTT L  L+G L+   SG++   G    
Sbjct: 28  KRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPT-SGEVRVAGLVPW 86

Query: 164 QFSSSLKRKTGFVT-QDDVLYPHLTVLETLSY-AALLRLPKKLTREEKIEQAEMVIMELG 221
           +      R+ G V  Q   L+  L V+++    AA+  LP    ++   E +E+    L 
Sbjct: 87  KRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL----LD 142

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
           L    ++ V     R +S G+R R  I   +L  P  L LDEPT GLD    + I   L+
Sbjct: 143 LEELLDTPV-----RQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLK 197

Query: 282 GLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
              R  G TV+ T H     +  +  +V+V+ +G  +Y G
Sbjct: 198 EYNRERGTTVLLTSHYMKD-IEALARRVLVIDKGRLLYDG 236

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 94.5 bits (236), Expect = 2e-20
 Identities = 68/214 (31%), Positives = 110/214 (51%), Gaps = 25/214 (11%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--QFSS--- 167
           V  L+GVS  V+PGE+ A+LG +G+GK+TL+  L+G      SG+I  +G+   FSS   
Sbjct: 21  VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP-PDSGEILIDGKPVAFSSPRD 79

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK----LTREEKIEQAEMVIMELGLT 223
           +L      V Q+  L P+L+V E +    L R P +    + R+    +A  ++  LGL 
Sbjct: 80  ALAAGIATVHQELSLVPNLSVAENI---FLGREPTRRFGLIDRKAMRRRARELLARLGLD 136

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
              +++VG      +S  +R+ V I + +  +   L+LDEPT+ L     +R+   +R L
Sbjct: 137 IDPDTLVGD-----LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRL 191

Query: 284 ARGGRTVITTIHQPSSRLYRMF---DKVVVLSEG 314
              G  +I   H    RL  +F   D++ VL +G
Sbjct: 192 KAQGVAIIYISH----RLDEVFEIADRITVLRDG 221

Length = 500

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 70/232 (30%), Positives = 107/232 (46%), Gaps = 26/232 (11%)

Query: 109 QTRTVSV---LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           Q   V+V   L  +S  V+ GE+L ++GP+G+GK+TLL  +AG L G  SG I + G+  
Sbjct: 2   QLNDVAVSTRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG--SGSIQFAGQPL 59

Query: 166 S----SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
                + L R   +++Q       + V + L+    L  P K   E        V   LG
Sbjct: 60  EAWSAAELARHRAYLSQQQTPPFAMPVFQYLT----LHQPDKTRTEAVASALNEVAEALG 115

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEML-----VNPS--CLLLDEPTSGLDSTTAQ 274
           L       V       +SGGE +RV +   +L     +NP+   LLLDEP + LD     
Sbjct: 116 LDDKLGRSVN-----QLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170

Query: 275 RIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            +   L  L + G  V+ + H   +   R  D+V +L +G  + SGR  +V+
Sbjct: 171 ALDRLLSELCQQGIAVVMSSHD-LNHTLRHADRVWLLKQGKLLASGRRDEVL 221

Length = 248

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 89.9 bits (224), Expect = 3e-20
 Identities = 68/228 (29%), Positives = 108/228 (47%), Gaps = 24/228 (10%)

Query: 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS- 167
               V+ L  VS  V  GE+  ++G SG+GK+TL+  + G L    SG +  +G   +  
Sbjct: 14  TGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCING-LERPTSGSVLVDGTDLTLL 72

Query: 168 ------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV--IME 219
                   +R+ G + Q   L    TV E ++       P ++    K E  E V  ++E
Sbjct: 73  SGKELRKARRRIGMIFQHFNLLSSRTVFENVAL------PLEIAGVPKAEIEERVLELLE 126

Query: 220 L-GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
           L GL    ++    P    +SGG+++RV I + +  NP  LL DE TS LD  T Q I+A
Sbjct: 127 LVGLEDKADAY---P--AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILA 181

Query: 279 TLRGL-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            LR +    G T++   H+    + R+ D+V V+ +G  +  G   +V
Sbjct: 182 LLRDINRELGLTIVLITHEMEV-VKRICDRVAVMEKGEVVEEGTVEEV 228

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C

 Score = 88.1 bits (219), Expect = 3e-20
 Identities = 59/211 (27%), Positives = 95/211 (45%), Gaps = 54/211 (25%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS---SLKR 171
           VL  +S  +K GE +A+LG SGSGK+TLL  L G L+ +  G+IT +G   S    +L  
Sbjct: 17  VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQ-QGEITLDGVPVSDLEKALSS 75

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
               + Q     P+L       +   LR                            + +G
Sbjct: 76  LISVLNQR----PYL-------FDTTLR----------------------------NNLG 96

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                  SGGER+R+++ + +L +   +LLDEPT GLD  T +++++ +  + +  +T+I
Sbjct: 97  RRF----SGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLK-DKTLI 151

Query: 292 TTIHQPSSRLYRM--FDKVVVLSEGSPIYSG 320
              H     L  +   DK++ L  G  I  G
Sbjct: 152 WITH----HLTGIEHMDKILFLENGKIIMQG 178

The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178

>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional

 Score = 90.1 bits (223), Expect = 5e-20
 Identities = 74/227 (32%), Positives = 116/227 (51%), Gaps = 25/227 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS--GKITYNGR--QFSSSLKR 171
           L+ V   +  GE++A+LGPSGSGK+TLL  L+G + G  S    I   GR  Q    L R
Sbjct: 20  LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79

Query: 172 -------KTGFVTQDDVLYPHLTVLETLSYAALLRLP------KKLTREEKIEQAEMVIM 218
                   TG++ Q   L   L+VLE +   AL   P         TRE+K ++A   + 
Sbjct: 80  DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQK-QRALQALT 138

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            +G+    +  V       +SGG+++RV+I + ++     +L DEP + LD  +A+ ++ 
Sbjct: 139 RVGMVHFAHQRVS-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193

Query: 279 TLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQ 324
           TLR + +  G TV+ T+HQ    L R  +++V L +G   Y G + Q
Sbjct: 194 TLRDINQNDGITVVVTLHQVDYAL-RYCERIVALRQGHVFYDGSSQQ 239

Length = 262

>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter

 Score = 85.5 bits (212), Expect = 5e-20
 Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 18/132 (13%)

Query: 140 TTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSY 194
           +TLL  + G L+   SG I  +G   +       L+++ G V QD  L+P LTV E L +
Sbjct: 1   STLLKLITGLLQ-PTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFF 59

Query: 195 AALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV 254
                    L  +E   +AE  +  +GL    +    G     +SGG+++RV+I + +L 
Sbjct: 60  G--------LRDKEADARAEEALERVGLPDFLDREPVG----TLSGGQKQRVAIARALLK 107

Query: 255 NPSCLLLDEPTS 266
            P  LLLDEPT+
Sbjct: 108 KPKLLLLDEPTA 119

ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119

>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 62/217 (28%), Positives = 111/217 (51%), Gaps = 21/217 (9%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--- 168
              VL+ +   +  GE++ ++GPSGSGK+TLL  +  +L    SG +  +G + +     
Sbjct: 13  PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCI-NKLEEITSGDLIVDGLKVNDPKVD 71

Query: 169 ---LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
              ++++ G V Q   L+PHLT LE + +       +  ++EE  +QA  ++ ++GL   
Sbjct: 72  ERLIRQEAGMVFQQFYLFPHLTALENVMFGP--LRVRGASKEEAEKQARELLAKVGLAER 129

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
            +          +SGG+++RV+I + + V P  +L DEPTS LD      ++  ++ LA 
Sbjct: 130 AHHYPSE-----LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE 184

Query: 286 GGRTVITTIH------QPSSRLYRMFDKVVVLSEGSP 316
            G T++   H      + +SRL  + DK  +  +G P
Sbjct: 185 EGMTMVIVTHEIGFAEKVASRLIFI-DKGRIAEDGDP 220

Length = 240

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 88.8 bits (220), Expect = 2e-19
 Identities = 67/220 (30%), Positives = 110/220 (50%), Gaps = 22/220 (10%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS------L 169
           L G++  +K GE+ A+LG +G+GK+TL   L G L+   SG+I ++G+    S      L
Sbjct: 22  LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK-PSSGRILFDGKPIDYSRKGLMKL 80

Query: 170 KRKTGFVTQD-DVLYPHLTVLETLSYAAL-LRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
           +   G V QD D      +V + +S+ A+ L+LP+   R+    + +  +   G+   ++
Sbjct: 81  RESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRK----RVDNALKRTGIEHLKD 136

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG- 286
                     +S G++KRV+I   +++ P  L+LDEPT+GLD      I+  L  + +  
Sbjct: 137 KPT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKEL 191

Query: 287 GRTVITTIHQPSS-RLYRMFDKVVVLSEGSPIYSGRAAQV 325
           G T+I   H      LY   D V V+ EG  I  G   +V
Sbjct: 192 GLTIIIATHDIDIVPLY--CDNVFVMKEGRVILQGNPKEV 229

Length = 283

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 91.2 bits (227), Expect = 3e-19
 Identities = 55/181 (30%), Positives = 95/181 (52%), Gaps = 18/181 (9%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----- 167
           +  ++G+S  ++ G+ L ++G SGSGK+TL  AL   +  +  G+I ++G+         
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ--GEIRFDGQDIDGLSRKE 357

Query: 168 --SLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL- 222
              L+R+   V QD    L P +TV + +    L     KL+  E+ ++    + E+GL 
Sbjct: 358 MRPLRRRMQVVFQDPYGSLSPRMTVGQIIE-EGLRVHEPKLSAAERDQRVIEALEEVGLD 416

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
              RN     P     SGG+R+R++I + +++ P  +LLDEPTS LD +   +++  LR 
Sbjct: 417 PATRNRY---P--HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRD 471

Query: 283 L 283
           L
Sbjct: 472 L 472

Length = 534

>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional

 Score = 87.4 bits (217), Expect = 3e-19
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 28/226 (12%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSS-SL 169
            +LN +S  +  G++ A++GP+G GK+TLL   A RL    SG +    +     SS  L
Sbjct: 16  RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFA-RLLTPQSGTVFLGDKPISMLSSRQL 74

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSY--AALLRLPKKLTREEK--IEQA--EMVIMELGLT 223
            R+   + Q  +    +TV E ++Y  +  L L  +L+ E+   + QA  +  I  L   
Sbjct: 75  ARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADR 134

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
           R  +          +SGG+R+R  +   +  +   +LLDEPT+ LD      ++  +R L
Sbjct: 135 RLTD----------LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL 184

Query: 284 ARGGRTVITTIH---QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
              G+TV+T +H   Q S    R  D +VVL+ G  +  G   +VM
Sbjct: 185 NTQGKTVVTVLHDLNQAS----RYCDHLVVLANGHVMAQGTPEEVM 226

Length = 255

>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit

 Score = 89.5 bits (222), Expect = 3e-19
 Identities = 60/240 (25%), Positives = 108/240 (45%), Gaps = 35/240 (14%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--------QFSS 167
           +N     +  GE+  ++G SGSGK+T +  L  RL    +G+I  +G         +   
Sbjct: 9   VNDADLAIAKGEIFVIMGLSGSGKSTTVRML-NRLIEPTAGQIFIDGENIMKQSPVELRE 67

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
             ++K G V Q   L+PH+T+L+  S    LL  P++  +E+ +E  ++V +E    R  
Sbjct: 68  VRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYP 127

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
           +          +SGG ++RV + + +   P  LL+DE  S LD      +   L+ L   
Sbjct: 128 DE---------LSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178

Query: 287 -GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPAD 345
             +T++   H     + R+ D++V++  G  +  G   ++              L NPA+
Sbjct: 179 LQKTIVFITHDLDEAI-RIGDRIVIMKAGEIVQVGTPDEI--------------LRNPAN 223

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 91.1 bits (227), Expect = 3e-19
 Identities = 56/185 (30%), Positives = 89/185 (48%), Gaps = 11/185 (5%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--QFSSS- 168
            V   + VS  VK GE+ A+LG +G+GK+TL+  L G  +   SG+I  +G+  +  S  
Sbjct: 16  GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ-PDSGEIRVDGKEVRIKSPR 74

Query: 169 --LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
             ++   G V Q  +L P LTV E +           + R +   + + +    GL    
Sbjct: 75  DAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDP 134

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
           ++ V       +S GE++RV I + +      L+LDEPT+ L    A  +   LR LA  
Sbjct: 135 DAKVAD-----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAE 189

Query: 287 GRTVI 291
           G+T+I
Sbjct: 190 GKTII 194

Length = 501

>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein

 Score = 90.8 bits (226), Expect = 6e-19
 Identities = 75/230 (32%), Positives = 119/230 (51%), Gaps = 43/230 (18%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNGRQFS---- 166
           +L+ VS  ++PGE +A++GPSGSGK+TLL  L G     F    SG + Y+G+  +    
Sbjct: 468 ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLG-----FETPESGSVFYDGQDLAGLDV 522

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-------IME 219
            +++R+ G V Q+  L    ++ E ++  A       LT +E  E A M         M 
Sbjct: 523 QAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTLDEAWEAARMAGLAEDIRAMP 575

Query: 220 LGLTRCRNSVV--GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
           +G+    ++V+  GG     +SGG+R+R+ I + ++  P  LL DE TS LD+ T Q IV
Sbjct: 576 MGM----HTVISEGG---GTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRT-QAIV 627

Query: 278 -ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
             +L  L +  R VI   H+ S+   R  D++ VL  G  +  G   ++M
Sbjct: 628 SESLERL-KVTRIVIA--HRLST--IRNADRIYVLDAGRVVQQGTYDELM 672

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686

>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional

 Score = 86.4 bits (214), Expect = 6e-19
 Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 34/221 (15%)

Query: 105 EPNKQTRTVSV-------LNGVSGMVKPGELLAMLGPSGSGKTTLLTAL--AGRLRGK-- 153
           EP  Q   +SV       LN VS    P E+ A++GPSGSGK+TLL ++     L  +  
Sbjct: 3   EPILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVT 62

Query: 154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL---PKKL 204
            +G I YNG    S       L+++ G V Q    +P +++ E + Y   LRL     K 
Sbjct: 63  ITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYG--LRLKGIKDKQ 119

Query: 205 TREEKIEQA--EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLD 262
             +E +E++     I +    R  +S +G      +SGG+++RV I + +  +P  +LLD
Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALG------LSGGQQQRVCIARVLATSPKIILLD 173

Query: 263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIH--QPSSRL 301
           EPTS LD  +A +I  TL GL +   T++      Q +SR+
Sbjct: 174 EPTSALDPISAGKIEETLLGL-KDDYTMLLVTRSMQQASRI 213

Length = 252

>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL

 Score = 85.9 bits (213), Expect = 7e-19
 Identities = 58/198 (29%), Positives = 94/198 (47%), Gaps = 18/198 (9%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL-------AGRLRGKFSGKIT----YNG 162
            VL  VS  V  GE +A+ GPSG+GK+TLL +L       +GR+  +  G        + 
Sbjct: 22  PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81

Query: 163 RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
           R+     ++  G+V+Q   + P ++ LE ++   L R    + RE    +A  ++  L +
Sbjct: 82  REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNI 138

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
              R   +    F   SGGE++RV+I +  + +   LLLDEPT+ LD+   Q +V  +  
Sbjct: 139 PE-RLWHLPPATF---SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE 194

Query: 283 LARGGRTVITTIHQPSSR 300
               G  +I   H    R
Sbjct: 195 AKARGAALIGIFHDEEVR 212

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224

>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA

 Score = 90.5 bits (225), Expect = 7e-19
 Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 27/232 (11%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS---- 166
           R    L+ +S +++PGE +A++G SGSGK+TL+  L  R     SG+I  +G   +    
Sbjct: 343 RDRPALDSISLVIEPGETVALVGRSGSGKSTLV-NLIPRFYEPDSGQILLDGHDLADYTL 401

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-------EMV-IM 218
           +SL+R+   V+QD VL+   T+   ++Y    +         +IE+A       + V  +
Sbjct: 402 ASLRRQVALVSQDVVLFND-TIANNIAYGRTEQAD-----RAEIERALAAAYAQDFVDKL 455

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            LGL    ++ +G      +SGG+R+R++I + +L +   L+LDE TS LD+ + + + A
Sbjct: 456 PLGL----DTPIGENGVL-LSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQA 510

Query: 279 TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
            L  L + GRT +   H+ S+      D++VV+ +G  +  G   +++   G
Sbjct: 511 ALERLMQ-GRTTLVIAHRLST--IEKADRIVVMDDGRIVERGTHNELLARNG 559

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571

>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter

 Score = 90.6 bits (225), Expect = 8e-19
 Identities = 64/227 (28%), Positives = 114/227 (50%), Gaps = 26/227 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           +L+ +S  +K      ++G SGSGK+TL   L G  + + SG+I  NG         +L+
Sbjct: 489 ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQAR-SGEILLNGFSLKDIDRHTLR 547

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-------IMELGLT 223
           +   ++ Q+  ++   ++LE L    LL   + ++++E     E+         M LG  
Sbjct: 548 QFINYLPQEPYIFSG-SILENL----LLGAKENVSQDEIWAACEIAEIKDDIENMPLGY- 601

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
           +   S  G      ISGG+++R+++ + +L +   L+LDE TS LD+ T ++IV  L  L
Sbjct: 602 QTELSEEGS----SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
               +T+I   H+ S  + +  DK++VL  G  I  G   +++D  G
Sbjct: 658 QD--KTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLDRNG 700

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708

>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional

 Score = 90.6 bits (225), Expect = 8e-19
 Identities = 64/194 (32%), Positives = 100/194 (51%), Gaps = 17/194 (8%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS----- 166
            V VL G+S  +  GE++A++G SGSGK+TL+  L G L    SG     G+  +     
Sbjct: 20  QVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNIL-GCLDKPTSGTYRVAGQDVATLDAD 78

Query: 167 --SSLKRKT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
             + L+R+  GF+ Q   L  HLT  + +   A+      L R++++ +A+ ++  LGL 
Sbjct: 79  ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVY---AGLERKQRLLRAQELLQRLGLE 135

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
             R       L    SGG+++RVSI + ++     +L DEPT  LDS + + ++A L  L
Sbjct: 136 D-RVEYQPSQL----SGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQL 190

Query: 284 ARGGRTVITTIHQP 297
              G TVI   H P
Sbjct: 191 RDRGHTVIIVTHDP 204

Length = 648

>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed

 Score = 88.5 bits (220), Expect = 9e-19
 Identities = 63/207 (30%), Positives = 101/207 (48%), Gaps = 21/207 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKRK 172
           V++ +   +  GE L +LGPSG GKTT+L  +AG      SG+I  +G+  +   +  R 
Sbjct: 29  VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAG-FETPDSGRIMLDGQDITHVPAENRH 87

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRL---PKKLTREEKIEQAEMVIME-LGLTRCRNS 228
              V Q   L+PH+TV E +++   LR+   P        +E   MV +E     +    
Sbjct: 88  VNTVFQSYALFPHMTVFENVAFG--LRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQ- 144

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287
                    +SGG+++RV+I + ++  P  LLLDE  S LD    +++   L+ L R  G
Sbjct: 145 ---------LSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLG 195

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEG 314
            T +   H     L  M D++VV+ +G
Sbjct: 196 ITFVFVTHDQEEAL-TMSDRIVVMRDG 221

Length = 375

>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein

 Score = 86.0 bits (213), Expect = 9e-19
 Identities = 73/218 (33%), Positives = 107/218 (49%), Gaps = 14/218 (6%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKR--- 171
           +++GV     PG L  +LGP+GSGK+TLL  LAG LR   +G +   G       +R   
Sbjct: 16  IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPD-AGTVDLAGVDLHGLSRRARA 74

Query: 172 -KTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSV 229
            +   V QD      LTV + +   AL R+P + L   +    A +V  +  L R   S 
Sbjct: 75  RRVALVEQDSDTAVPLTVRDVV---ALGRIPHRSLWAGDSPHDAAVV--DRALARTELSH 129

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
           +       +SGGER+RV + + +   P  LLLDEPT+ LD       +A +R LA  G T
Sbjct: 130 LADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVT 189

Query: 290 VITTIHQPSSRLYRMF-DKVVVLSEGSPIYSGRAAQVM 326
           V+  +H  +  L   + D VVVL  G  + +G   +V+
Sbjct: 190 VVAALHDLN--LAASYCDHVVVLDGGRVVAAGPPREVL 225

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256

>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional

 Score = 85.9 bits (213), Expect = 1e-18
 Identities = 65/205 (31%), Positives = 104/205 (50%), Gaps = 20/205 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-SLKRKT 173
            L  ++  ++ GELL +LGPSG GKTTLL  +AG +  +  G IT +G+       +R  
Sbjct: 16  ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQ-HGSITLDGKPVEGPGAER-- 72

Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
           G V Q++ L P   V + +++   L     + + +++E A  ++ ++GL         G 
Sbjct: 73  GVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLE--------GA 121

Query: 234 LFRGI---SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS-TTAQRIVATLRGLARGGRT 289
             R I   SGG+R+RV I + +  NP  LLLDEP   LD+ T  Q     L+     G+ 
Sbjct: 122 EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ 181

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEG 314
           V+   H     ++ M  ++V+LS G
Sbjct: 182 VLLITHDIEEAVF-MATELVLLSPG 205

Length = 255

>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 56/212 (26%), Positives = 88/212 (41%), Gaps = 45/212 (21%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF-SGKITYNGR---QFSSSLK 170
           +L GV+  +K GE+ A++GP+GSGK+TL   + G  + +   G+I + G          +
Sbjct: 15  ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEER 74

Query: 171 RKTG-FVT-QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
            + G F+  Q     P +   +       LR                             
Sbjct: 75  ARLGIFLAFQYPPEIPGVKNAD------FLR----------------------------- 99

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
                +  G SGGE+KR  I Q +L+ P   +LDEP SGLD    + +   +  L   G+
Sbjct: 100 ----YVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGK 155

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           +V+   H      Y   D+V VL +G  + SG
Sbjct: 156 SVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 89.0 bits (221), Expect = 2e-18
 Identities = 68/231 (29%), Positives = 116/231 (50%), Gaps = 27/231 (11%)

Query: 111 RTV---SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---Q 164
           RTV    V+  +S  ++PGE L ++G SGSGK+T   AL   +  +  G+I ++G+    
Sbjct: 294 RTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ--GEIWFDGQPLHN 351

Query: 165 FSSS----LKRKTGFVTQD--DVLYPHLTVLETLSYAALLRL-PKKLTREEKIEQAEMVI 217
            +      ++ +   V QD    L P L VL+ +     LR+    L+  ++ +Q   V+
Sbjct: 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQII--EEGLRVHQPTLSAAQREQQVIAVM 409

Query: 218 MELGL---TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
            E+GL   TR R            SGG+R+R++I + +++ PS ++LDEPTS LD T   
Sbjct: 410 EEVGLDPETRHRYPA-------EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQA 462

Query: 275 RIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           +I+A L+ L +  +     I      +  +  +V+VL +G  +  G   +V
Sbjct: 463 QILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERV 513

Length = 529

>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit

 Score = 86.8 bits (215), Expect = 2e-18
 Identities = 54/187 (28%), Positives = 88/187 (47%), Gaps = 13/187 (6%)

Query: 131 MLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKRKTGFVTQDDVLYPHLTV 188
           +LGPSG GKTTLL  LAG  +    G I  +G   +      R    V Q   L+PH+TV
Sbjct: 1   LLGPSGCGKTTLLRLLAGFEQPDS-GSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTV 59

Query: 189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSI 248
            E +++        K+ +  + E    V+  L L +        P    +SGG+++RV++
Sbjct: 60  EENVAF------GLKMRKVPRAEIKPRVLEALRLVQLEEFADRKPH--QLSGGQQQRVAL 111

Query: 249 GQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK 307
            + ++  P  LLLDEP S LD     ++   L+ +    G T +   H     +  M D+
Sbjct: 112 ARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAM-TMSDR 170

Query: 308 VVVLSEG 314
           + ++ +G
Sbjct: 171 IAIMRKG 177

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325

>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC

 Score = 84.6 bits (210), Expect = 2e-18
 Identities = 73/228 (32%), Positives = 104/228 (45%), Gaps = 37/228 (16%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF-SGKITYNGRQFSSSLK--- 170
           +L GV+  VK GE+ A++GP+GSGK+TL   +AG    +  SG I + G Q    L+   
Sbjct: 15  ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKG-QDLLELEPDE 73

Query: 171 --RKTGFVT-QDDVLYPHLTVLETLSYAALLRL------PKKLTREEKIEQAEMVIMELG 221
             R   F+  Q     P ++ LE L  A   R       P  L    K+ +A++ ++ + 
Sbjct: 74  RARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMD 133

Query: 222 ---LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
              L R  N         G SGGE+KR  I Q  L+ P   +LDE  SGLD   A +IVA
Sbjct: 134 EEFLNRSVNE--------GFSGGEKKRNEILQMALLEPKLAILDEIDSGLD-IDALKIVA 184

Query: 279 -TLRGLARGGRTVITTIHQPSSRLYRMF-----DKVVVLSEGSPIYSG 320
             +  L    R+ +   H       R+      D V VL +G  + SG
Sbjct: 185 EGINRLREPDRSFLIITHYQ-----RLLNYIKPDYVHVLLDGRIVKSG 227

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243

>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA

 Score = 83.2 bits (206), Expect = 3e-18
 Identities = 60/188 (31%), Positives = 91/188 (48%), Gaps = 20/188 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSSSLKR 171
           +  G+S  +  GE L + GP+G GKTTLL  LAG LR   SG++ +NG    +      R
Sbjct: 15  LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPD-SGEVRWNGTALAEQRDEPHR 73

Query: 172 KTGFVTQDDVLYPHLTVLETLS-YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
              ++     L P L+ LE L  +AA+         +  IE A   +  +GLT   +   
Sbjct: 74  NILYLGHLPGLKPELSALENLHFWAAIHG-----GAQRTIEDA---LAAVGLTGFEDL-- 123

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG-LARGGRT 289
                  +S G+++R+++ +  L      +LDEPT+ LD      +   LR  LARGG  
Sbjct: 124 ---PAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIV 180

Query: 290 VITTIHQP 297
           ++TT HQ 
Sbjct: 181 LLTT-HQD 187

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 86.4 bits (214), Expect = 3e-18
 Identities = 69/220 (31%), Positives = 109/220 (49%), Gaps = 21/220 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS---SLKR 171
           V+NG+S  V  GE   +LGP+G+GK+T+   + G +    +GKIT  G    +     + 
Sbjct: 56  VVNGLSFTVASGECFGLLGPNGAGKSTIARMILG-MTSPDAGKITVLGVPVPARARLARA 114

Query: 172 KTGFVTQDDVLYPHLTVLETL-SYAALLRLPKKLTREEKIEQAEMVIMELG-LTRCRNSV 229
           + G V Q D L    TV E L  +     +    TRE  IE     ++E   L    ++ 
Sbjct: 115 RIGVVPQFDNLDLEFTVRENLLVFGRYFGMS---TRE--IEAVIPSLLEFARLESKADAR 169

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
           V       +SGG ++R+++ + ++ +P  L+LDEPT+GLD      I   LR L   G+T
Sbjct: 170 VSD-----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKT 224

Query: 290 VITTIH--QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           ++ T H  + + RL    D++ VL  G  I  GR   ++D
Sbjct: 225 ILLTTHFMEEAERL---CDRLCVLEAGRKIAEGRPHALID 261

Length = 340

>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family

 Score = 88.2 bits (219), Expect = 3e-18
 Identities = 69/220 (31%), Positives = 115/220 (52%), Gaps = 26/220 (11%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG--- 162
           P  +  T   L G+S  ++ GE LA++GPSGSGK+TL   + G +    SG +  +G   
Sbjct: 327 PGGKKPT---LRGISFSLQAGEALAIIGPSGSGKSTLARLIVG-IWPPTSGSVRLDGADL 382

Query: 163 RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA------EM 215
           +Q+   +  +  G++ QD  L+P  TV E ++     R  +    E+ IE A      E+
Sbjct: 383 KQWDRETFGKHIGYLPQDVELFPG-TVAENIA-----RFGENADPEKIIEAAKLAGVHEL 436

Query: 216 VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           +   L L    ++V+G P    +SGG+R+R+++ + +  +P  ++LDEP S LD    Q 
Sbjct: 437 I---LRLPDGYDTVIG-PGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQA 492

Query: 276 IVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315
           +   ++ L   G TV+   H+PS  L    DK++VL +G 
Sbjct: 493 LANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGR 530

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 85.6 bits (212), Expect = 3e-18
 Identities = 70/228 (30%), Positives = 109/228 (47%), Gaps = 37/228 (16%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSSSLKR 171
           V++G+S  V+ GE   +LGP+G+GKTT L  L G L    +G I+  G      +   ++
Sbjct: 22  VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLG-LTHPDAGSISLCGEPVPSRARHARQ 80

Query: 172 KTGFVTQDDVLYPHLTVLETL---------SYAALLRLPKKLTREEKIEQ-AEMVIMELG 221
           + G V Q D L P  TV E L         S AA   L   L    K+E  A+  + EL 
Sbjct: 81  RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGEL- 139

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
                            SGG ++R+++ + ++ +P  L+LDEPT+GLD      +   LR
Sbjct: 140 -----------------SGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLR 182

Query: 282 GLARGGRTVITTIH--QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            L   G+T++ T H  + + RL    D++ V+ EG  I  G    +++
Sbjct: 183 SLLARGKTILLTTHFMEEAERL---CDRLCVIEEGRKIAEGAPHALIE 227

Length = 306

>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C

 Score = 83.3 bits (207), Expect = 3e-18
 Identities = 57/232 (24%), Positives = 97/232 (41%), Gaps = 60/232 (25%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
            + +  T   L  ++  V  GEL+A++GP GSGK++LL+AL G L  K SG ++  G   
Sbjct: 11  DSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE-KLSGSVSVPGS-- 67

Query: 166 SSSLKRKTGFVTQ-------------------DDVLYPHLTVLETLSYAALLRLPKKLTR 206
                    +V+Q                   D+  Y      + +   AL         
Sbjct: 68  -------IAYVSQEPWIQNGTIRENILFGKPFDEERY-----EKVIKACALEP------- 108

Query: 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEP 264
                  ++ I+  G      + +G    +GI  SGG+++R+S+ + +  +    LLD+P
Sbjct: 109 -------DLEILPDGD----LTEIGE---KGINLSGGQKQRISLARAVYSDADIYLLDDP 154

Query: 265 TSGLDSTTAQRIVAT-LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315
            S +D+   + I    + GL    +T I   HQ     +   D++VVL  G 
Sbjct: 155 LSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH--ADQIVVLDNGR 204

This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204

>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional

 Score = 88.5 bits (220), Expect = 3e-18
 Identities = 72/220 (32%), Positives = 109/220 (49%), Gaps = 32/220 (14%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKR 171
           +  VS   KPG+ +A++GP+G+GK+TL+  L  R+    SG+I  +G    +    SL+R
Sbjct: 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLI-NLLQRVFDPQSGRILIDGTDIRTVTRASLRR 409

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKK-LTREE-----KIEQAEMVIM--ELGLT 223
               V QD  L+         S    +R+ +   T EE     +  QA   I     G  
Sbjct: 410 NIAVVFQDAGLFNR-------SIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGY- 461

Query: 224 RCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
              ++VVG    RG  +SGGER+R++I + +L +P  L+LDE TS LD  T  ++ A L 
Sbjct: 462 ---DTVVGE---RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALD 515

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
            L   GRT     H+ S+   R  D+++V   G  + SG 
Sbjct: 516 EL-MKGRTTFIIAHRLST--VRNADRILVFDNGRVVESGS 552

Length = 588

>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

 Score = 88.1 bits (219), Expect = 3e-18
 Identities = 65/211 (30%), Positives = 108/211 (51%), Gaps = 23/211 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SSLK 170
           +L G+S  ++ GE L ++GPSGSGK+TL   L G      SG +  +G   RQ+    L 
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP-PTSGSVRLDGADLRQWDREQLG 409

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA------EMVIMELGLTR 224
           R  G++ QD  L+   T+ E ++     R  ++   E+ IE A      E++   L L +
Sbjct: 410 RHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELI---LRLPQ 460

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             ++ +G      +SGG+R+R+++ + +  +P  ++LDEP S LDS     + A +    
Sbjct: 461 GYDTRIG-EGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAK 519

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315
             G TV+   H+PS       DK++VL +G 
Sbjct: 520 ARGGTVVVIAHRPS--ALASVDKILVLQDGR 548

Length = 580

>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein

 Score = 84.3 bits (209), Expect = 4e-18
 Identities = 54/195 (27%), Positives = 95/195 (48%), Gaps = 26/195 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFSSS- 168
            L  ++  +   ++ A++GPSG GK+TLL +L  R+       +  GK+ ++G+      
Sbjct: 16  ALKNINLDIPKNQVTALIGPSGCGKSTLLRSL-NRMNDLVPGVRIEGKVLFDGQDIYDKK 74

Query: 169 -----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL- 222
                L+R+ G V Q    +P +++ + ++Y    RL     ++E  E  E  + +  L 
Sbjct: 75  IDVVELRRRVGMVFQKPNPFP-MSIYDNIAYG--PRLHGIKDKKELDEIVEESLKKAALW 131

Query: 223 ----TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
                R  +S +G      +SGG+++R+ I + + V P  LLLDEPTS LD     +I  
Sbjct: 132 DEVKDRLHDSALG------LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEE 185

Query: 279 TLRGLARGGRTVITT 293
            ++ L +    VI T
Sbjct: 186 LIQELKKKYTIVIVT 200

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247

>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein

 Score = 88.2 bits (219), Expect = 4e-18
 Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 22/221 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SSLK 170
            L+G++  V+PGE +A++GPSG+GK+TL   L  R     SG+I  +G   RQ   + L+
Sbjct: 355 ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLL-RFYDPQSGRILLDGVDLRQLDPAELR 413

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME---LGLTRCRN 227
            +   V QD VL+   +V+E + Y          T EE    A           L    +
Sbjct: 414 ARMALVPQDPVLFAA-SVMENIRYGRP-----DATDEEVEAAARAAHAHEFISALPEGYD 467

Query: 228 SVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
           + +G    RG+  SGG+R+R++I + +L +   LLLDE TS LD+ + Q +   L  L +
Sbjct: 468 TYLGE---RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK 524

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            GRT +   H+ ++ L    D++VV+ +G  +  G  A+++
Sbjct: 525 -GRTTLIIAHRLATVLKA--DRIVVMDQGRIVAQGTHAELI 562

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576

>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family

 Score = 87.9 bits (218), Expect = 5e-18
 Identities = 69/218 (31%), Positives = 120/218 (55%), Gaps = 16/218 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS----SSLK 170
           VL+ ++  +KPGE + ++GPSGSGK+TL T L  RL     G++  +G   +    + L+
Sbjct: 472 VLSNLNLDIKPGEFIGIVGPSGSGKSTL-TKLLQRLYTPQHGQVLVDGVDLAIADPAWLR 530

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V Q++VL+   ++ + ++        + +    K+  A   I    L +  N+ V
Sbjct: 531 RQMGVVLQENVLFSR-SIRDNIALCNPGAPFEHVIHAAKLAGAHDFI--SELPQGYNTEV 587

Query: 231 GGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
           G    +G  +SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +R + R GR
Sbjct: 588 GE---KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICR-GR 643

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           TVI   H+ S+   R  D+++VL +G    SGR  +++
Sbjct: 644 TVIIIAHRLST--VRACDRIIVLEKGQIAESGRHEELL 679

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694

>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI

 Score = 84.2 bits (208), Expect = 9e-18
 Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 15/217 (6%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK---R 171
           V+N +S  +  GE   +LGP+G+GK+T+   L G +     GKIT  G    S  +    
Sbjct: 19  VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLG-MISPDRGKITVLGEPVPSRARLARV 77

Query: 172 KTGFVTQDDVLYPHLTVLETL-SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
             G V Q D L P  TV E L  +     +    TRE  IE     ++E      +  V 
Sbjct: 78  AIGVVPQFDNLDPEFTVRENLLVFGRYFGMS---TRE--IEAVIPSLLEFARLESKADVR 132

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
              L    SGG ++R+++ + ++ +P  L+LDEPT+GLD      I   LR L   G+T+
Sbjct: 133 VALL----SGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTI 188

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           + T H       R+ D++ VL  G  I  GR   ++D
Sbjct: 189 LLTTHF-MEEAERLCDRLCVLESGRKIAEGRPHALID 224

This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303

>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

 Score = 82.6 bits (204), Expect = 1e-17
 Identities = 65/232 (28%), Positives = 104/232 (44%), Gaps = 30/232 (12%)

Query: 109 QTRTVSV---LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           Q   V+    L  +SG V+ GE+L ++GP+G+GK+TLL  +AG      SG I + G+  
Sbjct: 5   QLNDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPL 62

Query: 166 S----SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
                + L R   +++Q       + V   L+    L  P K   E   + A  + ++  
Sbjct: 63  EAWSATELARHRAYLSQQQTPPFAMPVWHYLT----LHQPDKTRTELLNDVAGALALDDK 118

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEML-----VNPS--CLLLDEPTSGLDSTTAQ 274
           L R  N          +SGGE +RV +   +L      NP+   LLLDEP + LD     
Sbjct: 119 LGRSTNQ---------LSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS 169

Query: 275 RIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            +   L  L + G  ++ + H  +  L R   +  +L  G  + SGR  +V+
Sbjct: 170 ALDRLLSALCQQGLAIVMSSHDLNHTL-RHAHRAWLLKRGKLLASGRREEVL 220

Length = 248

>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system

 Score = 82.7 bits (205), Expect = 1e-17
 Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 33/253 (13%)

Query: 102 SHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYN 161
           S  E  K+T     +N VS  V+ GE+  ++G SGSGK+TLL  +  RL    SGK+  +
Sbjct: 26  SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCI-NRLIEPTSGKVLID 84

Query: 162 GRQFSS-------SLKRKT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA 213
           G+  ++        L+RK    V Q   L PH TVLE +++   ++    + R E+ E+A
Sbjct: 85  GQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPRAEREERA 141

Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
              +  +GL    +          +SGG ++RV + + + V+P  LL+DE  S LD    
Sbjct: 142 AEALELVGLEGWEHKYPDE-----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIR 196

Query: 274 QRIVATLRGL-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSI 332
           + +   L  L A   +T++   H     L R+ D++ ++ +G  +  G   ++       
Sbjct: 197 REMQDELLRLQAELQKTIVFITHDLDEAL-RLGDRIAIMKDGRLVQVGTPEEI------- 248

Query: 333 GYVPGFNLLNPAD 345
                  L NPA+
Sbjct: 249 -------LTNPAN 254

This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269

>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein

 Score = 82.2 bits (203), Expect = 2e-17
 Identities = 65/229 (28%), Positives = 108/229 (47%), Gaps = 37/229 (16%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS------- 166
           +VL+G++  V  GE +A++GPSGSGK+T+L  L   L     G+I   G Q         
Sbjct: 14  TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILM-TLEPIDEGQIQVEGEQLYHMPGRNG 72

Query: 167 ----------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL--PKKLTREEKIEQAE 214
                       ++ K G V Q   L+PH TVL+ ++ A +L L   +    +  +E  +
Sbjct: 73  PLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLD 132

Query: 215 MVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
           MV    GL    + +        +SGG+++RV+I + + + P  +L DE TS LD     
Sbjct: 133 MV----GLADKADHMPAQ-----LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVG 183

Query: 275 RIVATLRGLARGGR-TVITTIHQP------SSRLYRMFDKVVVLSEGSP 316
            ++  +R LA     T++   H+       + R+   FDK  ++ +G P
Sbjct: 184 EVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC-FFDKGRIVEQGKP 231

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252

>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 81.4 bits (201), Expect = 2e-17
 Identities = 53/205 (25%), Positives = 92/205 (44%), Gaps = 15/205 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           +LN +S  V+ GE +A+ GPSG GK+TLL  +A  L    SG + + G   S+    + +
Sbjct: 18  ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVAS-LISPTSGTLLFEGEDVSTLKPEAYR 76

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           ++  +  Q   L+   TV + L +   +R  +    +       +    L  +    ++ 
Sbjct: 77  QQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP---DRAAALDLLARFALPDSILTKNIT 132

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
                  +SGGE++R+++ + +   P  LLLDE TS LD +  + I   +    R     
Sbjct: 133 E------LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVA 186

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGS 315
           +  I     +  R  DKV+ L  G 
Sbjct: 187 VLWITHDKDQAIRHADKVITLQPGH 211

Length = 223

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 82.9 bits (205), Expect = 2e-17
 Identities = 55/205 (26%), Positives = 105/205 (51%), Gaps = 18/205 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSSSLKR 171
            L+ VS   + G ++  LGP+G+GK+T +  + G L    SG +   G    Q    ++R
Sbjct: 17  ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPD-SGSVQVCGEDVLQNPKEVQR 75

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
             G++ + + LY  + V E L + A +     +  +   ++ E +I  +GL   ++  +G
Sbjct: 76  NIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG 132

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                 +S G R+RV + Q ++ +P  L+LDEPT+GLD      I   ++ + +  +T+I
Sbjct: 133 Q-----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTII 186

Query: 292 --TTIHQPSSRLYRMFDKVVVLSEG 314
             T I Q    +  + D+V+++++G
Sbjct: 187 LSTHIMQ---EVEAICDRVIIINKG 208

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 81.5 bits (201), Expect = 3e-17
 Identities = 60/222 (27%), Positives = 107/222 (48%), Gaps = 16/222 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL--------AGRLRGK--FSGKITYNGRQ 164
            +  V+  +   ++ A++GPSG GKTTLL ++          R+ GK  F G+  Y+ + 
Sbjct: 18  AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77

Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
             +  ++K G V Q    +P +++ + +++   +   K   + ++I   E  + +  L  
Sbjct: 78  DVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRI--VEESLKKAALWD 134

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
              S +  P  R +SGG+++R+ I + + V P  +LLDEPTS LD    QRI   L  L+
Sbjct: 135 EVKSELNKPGTR-LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELS 193

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
                VI T H     + R+ D +  +  G  I  G   +++
Sbjct: 194 ENYTIVIVT-HNIGQAI-RIADYIAFMYRGELIEYGPTREIV 233

Length = 250

>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein

 Score = 80.2 bits (198), Expect = 3e-17
 Identities = 53/186 (28%), Positives = 87/186 (46%), Gaps = 18/186 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSSSLKR 171
           + +G+S  +  GE L + GP+GSGKTTLL  LAG      +G++  NG        S+ R
Sbjct: 15  LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP-PLAGRVLLNGGPLDFQRDSIAR 73

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
              ++     +   L+VLE L +            +E++E+A   +  +GL    +  V 
Sbjct: 74  GLLYLGHAPGIKTTLSVLENLRFWH------ADHSDEQVEEA---LARVGLNGFEDRPVA 124

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                 +S G+++RV++ + +L      +LDEPT+ LD     R    + G    G  V+
Sbjct: 125 Q-----LSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVV 179

Query: 292 TTIHQP 297
            T HQ 
Sbjct: 180 LTTHQD 185

CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201

>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 81.2 bits (200), Expect = 4e-17
 Identities = 62/221 (28%), Positives = 105/221 (47%), Gaps = 21/221 (9%)

Query: 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-----GKFSGKITYNGRQFSS----- 167
            V+  V+ G + A++GPSG GKTT L A+  R+       + +G+I  +G+         
Sbjct: 22  NVNLDVQRGTVNALIGPSGCGKTTFLRAI-NRMHDLTPGARVTGRILLDGQDIYGPRVDP 80

Query: 168 -SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
            +++R+ G V Q    +P ++V + +   A L+L     R+  +E AE  +    L    
Sbjct: 81  VAMRRRVGMVFQKPNPFPTMSVFDNV--VAGLKLAGIRDRDHLMEVAERSLRGAALWDEV 138

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
              +  P   G+SGG+++R+ I + + V P  LL+DEPTS LD  +  RI   +  L + 
Sbjct: 139 KDRLKTPA-TGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKV 197

Query: 287 GRTVITT--IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
              +I T  +HQ +    R+ D       G  +  G   Q+
Sbjct: 198 TTIIIVTHNMHQAA----RVSDTTSFFLVGDLVEHGPTDQL 234

Length = 252

>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional

 Score = 81.2 bits (200), Expect = 5e-17
 Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 26/200 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-------- 166
           VL GVS     G++++++G SGSGK+T L  +   L     G I  NG+  +        
Sbjct: 20  VLKGVSLQANAGDVISIIGSSGSGKSTFLRCI-NFLEKPSEGSIVVNGQTINLVRDKDGQ 78

Query: 167 ---------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI 217
                      L+ +   V Q   L+ H+TVLE +  A +  L   L+++E  E+A   +
Sbjct: 79  LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYL 136

Query: 218 MELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
            ++G+  R +     G     +SGG+++RVSI + + + P  LL DEPTS LD      +
Sbjct: 137 AKVGIDERAQ-----GKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEV 191

Query: 277 VATLRGLARGGRTVITTIHQ 296
           +  ++ LA  G+T++   H+
Sbjct: 192 LRIMQQLAEEGKTMVVVTHE 211

Length = 257

>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional

 Score = 82.6 bits (205), Expect = 5e-17
 Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 17/162 (10%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK-- 170
             V+ G+   V  GE + ++GPSG GK+TLL  +AG L    SG+I   GR   + L+  
Sbjct: 17  TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAG-LERITSGEIWIGGRVV-NELEPA 74

Query: 171 -RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG--LTRCRN 227
            R    V Q+  LYPH++V E ++Y   +R   K   EE++ +A   I+EL   L R   
Sbjct: 75  DRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAAR-ILELEPLLDR--- 130

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
                P  R +SGG+R+RV++G+ ++  P+  L DEP S LD
Sbjct: 131 ----KP--RELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166

Length = 356

>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein

 Score = 84.4 bits (209), Expect = 7e-17
 Identities = 68/220 (30%), Positives = 114/220 (51%), Gaps = 16/220 (7%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----S 168
           V VL G++  + PGE++A++GPSGSGK+T+  AL   L     G++  +G          
Sbjct: 494 VPVLKGLTFTLHPGEVVALVGPSGSGKSTVA-ALLQNLYQPTGGQVLLDGVPLVQYDHHY 552

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRN 227
           L R+   V Q+ VL+   +V E ++Y  L   P  ++    K   A   IME       +
Sbjct: 553 LHRQVALVGQEPVLFSG-SVRENIAY-GLTDTPDEEIMAAAKAANAHDFIME--FPNGYD 608

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
           + V G     +SGG+++R++I + ++  P  L+LDE TS LD    ++++   R  +R  
Sbjct: 609 TEV-GEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALD-AECEQLLQESR--SRAS 664

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           RTV+   H+ S       D+++VL +GS +  G   Q+M+
Sbjct: 665 RTVLLIAHRLS--TVERADQILVLKKGSVVEMGTHKQLME 702

[Transport and binding proteins, Other]. Length = 711

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 79.9 bits (197), Expect = 8e-17
 Identities = 66/212 (31%), Positives = 94/212 (44%), Gaps = 20/212 (9%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVL 182
              GELL +LGP+G+GKTTLL A+ G L     G +   G        R  G+V Q    
Sbjct: 3   ADKGELLGLLGPNGAGKTTLLRAILG-LIPPAKGTVKVAGAS-PGKGWRHIGYVPQRHEF 60

Query: 183 ---YP----HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
              +P    H  +     +   LR P         +    V    GLT   +  VG    
Sbjct: 61  AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV----GLTELADRPVGE--- 113

Query: 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
             +SGG+R+RV + + +   PS LLLDEP +GLD  T + +      LA  G  ++ T H
Sbjct: 114 --LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171

Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
             +  +    D+VV+L+ G  I  G   Q+ D
Sbjct: 172 DLAQAMA-TCDRVVLLN-GRVIADGTPQQLQD 201

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 80.9 bits (199), Expect = 9e-17
 Identities = 63/223 (28%), Positives = 112/223 (50%), Gaps = 17/223 (7%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK-----FSGKITYNGRQFSS- 167
           +VL+ VS       + +++GP+GSGKTT L  L  R+  K     +SG +   GR   + 
Sbjct: 35  TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTL-NRMNDKVSGYRYSGDVLLGGRSIFNY 93

Query: 168 ----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
                 +R+ G + Q    +P +++++ +   A +R  K + R+E    A+  + E+GL 
Sbjct: 94  RDVLEFRRRVGMLFQRPNPFP-MSIMDNV--LAGVRAHKLVPRKEFRGVAQARLTEVGLW 150

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                 +    FR +SGG+++ + + + + VNP  LLLDEPTS LD TT ++I   +R L
Sbjct: 151 DAVKDRLSDSPFR-LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL 209

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           A   R  +  +    ++  R+ D+  +  +G  +  G   Q+ 
Sbjct: 210 A--DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250

Length = 276

>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 78.2 bits (194), Expect = 1e-16
 Identities = 54/211 (25%), Positives = 92/211 (43%), Gaps = 56/211 (26%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF-----SSSL 169
            +  VS  V+ GE++ + G  G+G+T L  AL G LR   SG+IT +G+         ++
Sbjct: 15  AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFG-LRPPASGEITLDGKPVTRRSPRDAI 73

Query: 170 KRKTGFVTQD---DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
           +    +V +D   + L   L+V E ++ ++LL                            
Sbjct: 74  RAGIAYVPEDRKREGLVLDLSVAENIALSSLL---------------------------- 105

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
                       SGG +++V + + +  +P  L+LDEPT G+D      I   +R LA  
Sbjct: 106 ------------SGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADA 153

Query: 287 GRTVITTIHQPSSRL---YRMFDKVVVLSEG 314
           G+ V+      SS L     + D+++V+ EG
Sbjct: 154 GKAVLLI----SSELDELLGLCDRILVMYEG 180

This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182

>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 79.5 bits (196), Expect = 1e-16
 Identities = 70/226 (30%), Positives = 105/226 (46%), Gaps = 34/226 (15%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           +L  +S   + G +  ++GPSG+GK+TL+  L  RL     G I  +G    +     L+
Sbjct: 18  ILKDISVKFEGGAIYTIVGPSGAGKSTLIK-LINRLIDPTEGSILIDGVDIKTIDVIDLR 76

Query: 171 RKTGFVTQDDVLYPHL---TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---R 224
           RK G V Q     PHL   TV + + Y  +L+        EK    E  +  +GL     
Sbjct: 77  RKIGMVFQQ----PHLFEGTVKDNIEYGPMLK-------GEKNVDVEYYLSIVGLNKEYA 125

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
            R+        + +SGGE +RVSI + +  NP  LLLDEPTS LD T+ + I   +  L 
Sbjct: 126 TRD-------VKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLK 178

Query: 285 -RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
            +   TVI   H    +  R+ D    L++G  +     A+  D+F
Sbjct: 179 NKMNLTVIWITHN-MEQAKRIGDYTAFLNKGILV---EYAKTYDFF 220

Length = 241

>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 79.7 bits (196), Expect = 1e-16
 Identities = 59/222 (26%), Positives = 112/222 (50%), Gaps = 16/222 (7%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL------RGKFSGKITYNGRQF-- 165
           ++L  ++  +    +  ++GPSGSGK+TLL  L  RL      + K  GK+ Y G+    
Sbjct: 24  AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVL-NRLIEIYDSKIKVDGKVLYFGKDIFQ 82

Query: 166 --SSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
             +  L+++ G V Q    +PHL++ + ++Y       K+    +KI   E  + ++GL 
Sbjct: 83  IDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI--VEECLRKVGLW 140

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
           +     +  P  + +SGG+++R++I + + + P  LL+DEPTS +D   +Q I   +  L
Sbjct: 141 KEVYDRLNSPASQ-LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL 199

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            +    ++   H P  ++ R+ D V  L  G  +  G + ++
Sbjct: 200 -KNEIAIVIVSHNP-QQVARVADYVAFLYNGELVEWGSSNEI 239

Length = 257

>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 80.2 bits (198), Expect = 1e-16
 Identities = 63/226 (27%), Positives = 107/226 (47%), Gaps = 24/226 (10%)

Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS- 168
           + +   LN ++ +      +A++GP+G+GK+TL     G L+   SG +   G   +   
Sbjct: 14  SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPT-SGSVLIRGEPITKEN 72

Query: 169 ---LKRKTGFVTQ---DDVLYPHLTVLETLSYAALLRLPKKL-TREEKIE-QAEMVIMEL 220
              +++  G V Q   D +  P  TV + +++      P  L   EE +  +    +  L
Sbjct: 73  IREVRKFVGLVFQNPDDQIFSP--TVEQDIAFG-----PINLGLDEETVAHRVSSALHML 125

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           GL   R+ V   P    +SGGE+KRV+I   + + P  L+LDEPT+GLD    + ++  L
Sbjct: 126 GLEELRDRV---P--HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFL 180

Query: 281 RGLA-RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
             L    G TVI + HQ    +  M D + V+ +G  +  G   ++
Sbjct: 181 NDLPETYGMTVIFSTHQ-LDLVPEMADYIYVMDKGRIVAYGTVEEI 225

Length = 277

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 82.6 bits (205), Expect = 2e-16
 Identities = 60/214 (28%), Positives = 107/214 (50%), Gaps = 24/214 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--QFSS---SL 169
            +  VS  V+ GE+L + G  G+G+T L  AL G  R   SG+I  +G+  +  S   ++
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFG-ARPASSGEILLDGKPVRIRSPRDAI 332

Query: 170 KRKTGFVTQD---DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ--AEMVIMELGL-T 223
           K    +V +D   + L   +++ E ++ A+L R  ++   + + E+  AE  I  L + T
Sbjct: 333 KAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKT 392

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                 +G      +SGG +++V + + +  +P  L+LDEPT G+D      I   +R L
Sbjct: 393 PSPEQPIGT-----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL 447

Query: 284 ARGGRTVITTIHQPSSRL---YRMFDKVVVLSEG 314
           A  G+ ++      SS L     + D+++V+ EG
Sbjct: 448 AAEGKAILMI----SSELPELLGLSDRILVMREG 477

Length = 500

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 79.9 bits (198), Expect = 2e-16
 Identities = 58/223 (26%), Positives = 94/223 (42%), Gaps = 57/223 (25%)

Query: 99  FATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158
           F    G    + R V  ++GVS  +K GE L ++G SG GK+TL   +   L    SG+I
Sbjct: 14  FPVGKGF--GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLIL-GLEEPTSGEI 70

Query: 159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIM 218
            + G+                                       KL++EE+ E+   ++ 
Sbjct: 71  LFEGKDI------------------------------------TKLSKEERRERVLELLE 94

Query: 219 ELGLTRCRNSVVGGPLFRG-----ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD-STT 272
           ++GL            F       +SGG+R+R+ I + + +NP  ++ DEP S LD S  
Sbjct: 95  KVGL---------PEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQ 145

Query: 273 AQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           AQ I+  L+ L    G T +   H   S +  + D++ V+  G
Sbjct: 146 AQ-ILNLLKDLQEELGLTYLFISHD-LSVVRYISDRIAVMYLG 186

Length = 268

>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional

 Score = 81.1 bits (201), Expect = 2e-16
 Identities = 64/208 (30%), Positives = 99/208 (47%), Gaps = 31/208 (14%)

Query: 130 AMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL--------KRKTGFVTQDDV 181
           A+ G SG+GKT+L+ A++G  R +  G+I  NGR    +         KR+ G+V QD  
Sbjct: 28  AIFGRSGAGKTSLINAISGLTRPQ-KGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR 86

Query: 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF----RG 237
           L+PH  V   L Y            +  + Q + ++  LG+          PL       
Sbjct: 87  LFPHYKVRGNLRYG---------MAKSMVAQFDKIVALLGI---------EPLLDRYPGS 128

Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
           +SGGE++RV+IG+ +L  P  LL+DEP + LD    + ++  L  LAR     I  +   
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHS 188

Query: 298 SSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
              + R+ D+VVVL +G     G   +V
Sbjct: 189 LDEILRLADRVVVLEQGKVKAFGPLEEV 216

Length = 352

>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D

 Score = 78.7 bits (194), Expect = 2e-16
 Identities = 66/213 (30%), Positives = 107/213 (50%), Gaps = 13/213 (6%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGF 175
           L GV+  ++ GE ++++G SG GK+TLL  ++G L    SG +   G+Q +     +   
Sbjct: 1   LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISG-LAQPTSGGVILEGKQITEPGPDRM-V 58

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
           V Q+  L P LTV E +   A+ R+   L++ E+    E  I  +GLT   +   G    
Sbjct: 59  VFQNYSLLPWLTVRENI-ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQ--- 114

Query: 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR-TVITTI 294
             +SGG ++RV+I + + + P  LLLDEP   LD+ T   +   L  +    R TV+   
Sbjct: 115 --LSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVT 172

Query: 295 HQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           H     L  + D+VV+L+ G     G   Q+++
Sbjct: 173 HDVDEALL-LSDRVVMLTNGPAANIG---QILE 201

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230

>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK

 Score = 79.1 bits (195), Expect = 2e-16
 Identities = 75/234 (32%), Positives = 112/234 (47%), Gaps = 38/234 (16%)

Query: 117 NGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--------QFSSS 168
             VS  + PGE+L ++G SGSGK+TLL  LAGRL     G  TY  R        Q S +
Sbjct: 20  RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPD-HGTATYIMRSGAELELYQLSEA 78

Query: 169 LKRKT-----GFVTQDDVLYPHLTVLETLSYAA-----LLRLPKKL---TREEKIEQAEM 215
            +R+      GFV Q+    P   +   +S  A     L+ +  +     R    +  E 
Sbjct: 79  ERRRLMRTEWGFVHQN----PRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEE 134

Query: 216 VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           V  E+  TR  +      L R  SGG ++R+ I + ++  P  + +DEPT GLD +   R
Sbjct: 135 V--EIDPTRIDD------LPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQAR 186

Query: 276 IVATLRGLARG-GRTVITTIHQPS-SRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           ++  LRGL R  G  VI   H    +RL  +  +++V+ +G  + SG   QV+D
Sbjct: 187 LLDLLRGLVRDLGLAVIIVTHDLGVARL--LAQRLLVMQQGRVVESGLTDQVLD 238

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 57/170 (33%), Positives = 86/170 (50%), Gaps = 14/170 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL---RGKFSGKI-------TYNG 162
           V  ++ VS  VK GE+  ++G SG+GKTTL   +AG L    G+ + ++       T  G
Sbjct: 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356

Query: 163 RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
                  KR  G + Q+  LYPH TVL+ L+ A  L LP +L R + +   +MV    G 
Sbjct: 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMV----GF 412

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272
              +   +       +S GER RV++ Q ++  P  ++LDEPT  +D  T
Sbjct: 413 DEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPIT 462

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 79.0 bits (195), Expect = 2e-16
 Identities = 76/230 (33%), Positives = 116/230 (50%), Gaps = 34/230 (14%)

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--------QFSSSLK 170
           VS  + PGE+L ++G SGSGKTTLL  ++GRL    +G +TY  R          S + +
Sbjct: 25  VSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPD-AGTVTYRMRDGQPRDLYTMSEAER 83

Query: 171 RKT-----GFVTQD--DVLYPHLT----VLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
           R+      GFV Q+  D L   ++    + E L  A   R    + R E  +  E V  E
Sbjct: 84  RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL-MAIGARHYGNI-RAEAQDWLEEV--E 139

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
           + L R  +      L R  SGG ++R+ I + ++  P  + +DEPT GLD +   R++  
Sbjct: 140 IDLDRIDD------LPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDL 193

Query: 280 LRGLAR--GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           LRGL R  G   VI T     +RL  + D+++V+ +G  + SG   +V+D
Sbjct: 194 LRGLVRELGLAVVIVTHDLAVARL--LADRLMVMKQGQVVESGLTDRVLD 241

Length = 258

>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein

 Score = 82.7 bits (205), Expect = 3e-16
 Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 40/230 (17%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ--------FS 166
           ++   S  ++PG+ +A++G SGSGK+T+   +AG L   +SG+I ++G           +
Sbjct: 494 LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAG-LYQPWSGEILFDGIPREEIPREVLA 552

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLE-------TLSYAALLRLPKKLTREEKIEQAEMVIME 219
           +S+      V QD  L+   TV +       T+  A L+R  K     + I         
Sbjct: 553 NSV----AMVDQDIFLFEG-TVRDNLTLWDPTIPDADLVRACKDAAIHDVI--------- 598

Query: 220 LGLTRCRNSVV--GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
                  ++ +  GG     +SGG+R+R+ I + ++ NPS L+LDE TS LD  T + I 
Sbjct: 599 TSRPGGYDAELAEGG---ANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIID 655

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
             LR   R G T I   H+ S+   R  D+++VL  G  +  G   ++  
Sbjct: 656 DNLR---RRGCTCIIVAHRLST--IRDCDEIIVLERGKVVQRGTHEELWA 700

This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710

>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

 Score = 80.9 bits (200), Expect = 3e-16
 Identities = 54/176 (30%), Positives = 89/176 (50%), Gaps = 17/176 (9%)

Query: 102 SHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYN 161
           S  E  K+T  V  +N  S  V+ GE+  ++G SGSGK+TL+  L  RL     G+I  +
Sbjct: 30  SKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLL-NRLIEPTRGEILVD 88

Query: 162 GRQFS----SSL----KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA 213
           G+  +    + L    ++K   V Q   L PH TVLE +++   L + + + + E+ E+A
Sbjct: 89  GKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFG--LEV-QGVPKAEREERA 145

Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
              +  +GL    +          +SGG ++RV + + +  +P  LL+DE  S LD
Sbjct: 146 LEALELVGLEGYADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALD 196

Length = 386

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 81.0 bits (200), Expect = 5e-16
 Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 22/225 (9%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----- 167
           V  L  V+  V PGE+ A+LG +G+GK+TL+  L+G +     G IT N   ++      
Sbjct: 18  VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSG-IHEPTKGTITINNINYNKLDHKL 76

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK-------LTREEKIEQAEMVIMEL 220
           + +   G + Q+  +   LTVLE L      R   K       +   E   +A M+++ +
Sbjct: 77  AAQLGIGIIYQELSVIDELTVLENLYIG---RHLTKKVCGVNIIDWREMRVRAAMMLLRV 133

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           GL    +  V       +S   ++ + I + ++++   +++DEPTS L +     +   +
Sbjct: 134 GLKVDLDEKVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIM 188

Query: 281 RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
             L + G  ++   H+  + + R+ D+  V+ +GS + SG  + V
Sbjct: 189 NQLRKEGTAIVYISHK-LAEIRRICDRYTVMKDGSSVCSGMVSDV 232

Length = 510

>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 77.6 bits (191), Expect = 6e-16
 Identities = 57/207 (27%), Positives = 104/207 (50%), Gaps = 16/207 (7%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-----QFSS 167
           +  L+ VS  +  GE++ ++G +G+GKTTLL  L G  R   SG+I ++G+     Q + 
Sbjct: 18  IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRAT-SGRIVFDGKDITDWQTAK 76

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
            ++     V +   ++  +TV E L+        ++   +E+I+    +   L   R + 
Sbjct: 77  IMREAVAIVPEGRRVFSRMTVEENLAMGGFF--AERDQFQERIKWVYELFPRLHERRIQR 134

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
           +         +SGGE++ ++IG+ ++  P  LLLDEP+ GL     Q+I  T+  L   G
Sbjct: 135 AGT-------MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQG 187

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEG 314
            T I  + Q +++  ++ D+  VL  G
Sbjct: 188 MT-IFLVEQNANQALKLADRGYVLENG 213

Length = 237

>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 77.5 bits (191), Expect = 6e-16
 Identities = 64/236 (27%), Positives = 100/236 (42%), Gaps = 34/236 (14%)

Query: 77  PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSG 136
           P  L   +V+ +  LH   G                + VL  VS  V  GE + + GPSG
Sbjct: 2   PTPLNVSNVSKTFTLHQQGGV--------------RLPVLRNVSLSVNAGECVVLHGPSG 47

Query: 137 SGKTTLLTALAGRLRGKFSGKI------------TYNGRQFSSSLKRKTGFVTQDDVLYP 184
           SGK+TLL +L         G+I            T   R+     +   G+V+Q   + P
Sbjct: 48  SGKSTLLRSLYANYLPD-EGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIP 106

Query: 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERK 244
            ++ L+ ++   L R    + RE    +A  ++  L L     S+         SGGE++
Sbjct: 107 RVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLAPATF----SGGEQQ 159

Query: 245 RVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR 300
           RV+I +  +V+   LLLDEPT+ LD+T    +V  +R     G  ++   H    R
Sbjct: 160 RVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVR 215

Length = 235

>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 78.6 bits (194), Expect = 6e-16
 Identities = 61/218 (27%), Positives = 105/218 (48%), Gaps = 16/218 (7%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS------SSL 169
           L+ V+  ++ GE + ++G +GSGK+TL+  L G L+   SGKI  +G   +      S +
Sbjct: 23  LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPT-SGKIIIDGVDITDKKVKLSDI 81

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL-TREEKIEQAEMVIMEL-GLTRCRN 227
           ++K G V Q    YP   + E      +   P  L   EE+IE      M + GL     
Sbjct: 82  RKKVGLVFQ----YPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDY--E 135

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
                  F  +SGG+++RV+I   + + P  L+LDEPT+GLD      I+  ++ L +  
Sbjct: 136 DYKDKSPFE-LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEY 194

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
              I  +      + ++ D+++V+++G     G   +V
Sbjct: 195 NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREV 232

Length = 287

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 79.0 bits (195), Expect = 8e-16
 Identities = 67/247 (27%), Positives = 106/247 (42%), Gaps = 21/247 (8%)

Query: 95  KGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF 154
           KGS     H    ++ R++  +  +S  +  GE++  LG +G+GK+T L  L G L    
Sbjct: 23  KGSLNHFFH----RKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPT- 77

Query: 155 SGKITYNG----RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL-RLPKKLTREEK 209
           SGK+  NG    R+    L+     + Q   L+  L  L++L    L+  +P     E  
Sbjct: 78  SGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERL 137

Query: 210 IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
               E+    L L       V     R +S G+R R  +   +L  P  L LDEPT GLD
Sbjct: 138 DFLTEI----LDLEGFLKWPV-----RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLD 188

Query: 270 STTAQRIVATLRGL-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
                 I   L+        TV+ T H     +  + D+V+++ +G  ++ G  AQ+ + 
Sbjct: 189 VNAQANIREFLKEYNEERQATVLLTTHIFDD-IATLCDRVLLIDQGQLVFDGTLAQLQEQ 247

Query: 329 FGSIGYV 335
           FG     
Sbjct: 248 FGPYKEF 254

Length = 325

>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

 Score = 80.7 bits (200), Expect = 9e-16
 Identities = 60/216 (27%), Positives = 111/216 (51%), Gaps = 29/216 (13%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS----SSLKRKTGFVTQ 178
           +  G+ +A++GPSG+GKT+LL AL G L   + G +  NG +       S ++   +V Q
Sbjct: 373 LPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGSLKINGIELRELDPESWRKHLSWVGQ 430

Query: 179 DDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-------EMV-IMELGLTRCRNSVV 230
           +  L PH T+ + +       L      +E+++QA       E + ++  GL    ++ +
Sbjct: 431 NPQL-PHGTLRDNV------LLGNPDASDEQLQQALENAWVSEFLPLLPQGL----DTPI 479

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+S G+ +R+++ + +L     LLLDEPT+ LD+ + Q ++  L   +R   T+
Sbjct: 480 GDQA-AGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTL 538

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           + T HQ    L +  D++ V+ +G  +  G  A++ 
Sbjct: 539 MVT-HQ-LEDLAQW-DQIWVMQDGQIVQQGDYAELS 571

Length = 588

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 79.9 bits (198), Expect = 1e-15
 Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 27/224 (12%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ--- 164
           K  R V+ +  VS  V+ GE++ + G +G+G++ L+ A++G LR   SG+I  NG+    
Sbjct: 266 KDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISG-LRKPASGRILLNGKDVLG 324

Query: 165 -FSSSLKRKTG--FVTQD---DVLYPHLT-----VLETLSYAALLRLPKKLTREEKIEQA 213
             S   +R+ G  +V +D     L   L+     VL         R          I + 
Sbjct: 325 RLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSR--GGFLDRRAIRKF 382

Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
              ++E    R  +        R +SGG ++++ + +E+   P  L+  +PT GLD    
Sbjct: 383 ARELIEEFDVRAPSP---DAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAI 439

Query: 274 QRIVATLRGLARGGRTVI---TTIHQPSSRLYRMFDKVVVLSEG 314
           + I   L  L   G+ V+     + +    +  + D++ V+ EG
Sbjct: 440 EFIHERLLELRDAGKAVLLISEDLDE----ILELSDRIAVIYEG 479

Length = 501

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 80.4 bits (199), Expect = 1e-15
 Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 60/217 (27%)

Query: 63  PLVIRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGM 122
           PL  RF    + L  + L+FE+V+   +                        +L  +S  
Sbjct: 305 PLAFRFPPPGKRLGKLVLEFENVSKGYD--------------------GGRLLLKDLSFR 344

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQD-DV 181
           +  G+ +A++GP+G+GK+TLL  LAG L G  SG +   G         K G+  Q  D 
Sbjct: 345 IDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLSGTVKV-GE------TVKIGYFDQHRDE 396

Query: 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG---- 237
           L P  TVLE L              E   +  E  +          + +G   F G    
Sbjct: 397 LDPDKTVLEEL-------------SEGFPDGDEQEVR---------AYLGRFGFTGEDQE 434

Query: 238 -----ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
                +SGGE+ R+ + + +L  P+ LLLDEPT+ LD
Sbjct: 435 KPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471

Length = 530

>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein

 Score = 78.4 bits (193), Expect = 1e-15
 Identities = 65/226 (28%), Positives = 110/226 (48%), Gaps = 22/226 (9%)

Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-- 167
           T+T+  LN VS  V  G++  ++G SG+GK+TL+  +   L    SG +  +G+  ++  
Sbjct: 15  TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCV-NLLERPTSGSVIVDGQDLTTLS 73

Query: 168 -----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL--TREEKIEQAEMVIMEL 220
                  +R+ G + Q   L    TV   ++      LP +L  T +++I++    ++ L
Sbjct: 74  NSELTKARRQIGMIFQHFNLLSSRTVFGNVA------LPLELDNTPKDEIKRKVTELLAL 127

Query: 221 -GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
            GL    +S         +SGG+++RV+I + +  NP  LL DE TS LD  T Q I+  
Sbjct: 128 VGLGDKHDSYPSN-----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILEL 182

Query: 280 LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           L+ + R     I  I      + R+ D V V+S G  I  G  +++
Sbjct: 183 LKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEI 228

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343

>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 73/237 (30%), Positives = 112/237 (47%), Gaps = 46/237 (19%)

Query: 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--------QFSSSL 169
            VS  + PGE+L ++G SGSGKTTLL AL+ RL    +G++ Y  R          S + 
Sbjct: 24  DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPD-AGEVHYRMRDGQLRDLYALSEAE 82

Query: 170 KR---KT--GFVTQD--DVLYPHLT----VLETL------SYAALLRLPKKLTREEKIEQ 212
           +R   +T  GFV Q   D L   ++    + E L       Y  +        R    + 
Sbjct: 83  RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDI--------RATAGDW 134

Query: 213 AEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272
            E V  E+   R  +      L    SGG ++R+ I + ++ +P  + +DEPT GLD + 
Sbjct: 135 LERV--EIDAARIDD------LPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSV 186

Query: 273 AQRIVATLRGLAR--GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
             R++  LRGL R  G   VI T     +RL  +  +++V+ +G  + SG   QV+D
Sbjct: 187 QARLLDLLRGLVRELGLAVVIVTHDLAVARL--LAHRLLVMKQGRVVESGLTDQVLD 241

Length = 258

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 76.2 bits (188), Expect = 2e-15
 Identities = 54/227 (23%), Positives = 105/227 (46%), Gaps = 25/227 (11%)

Query: 117 NGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF----SSSLKRK 172
           N V+  V+  E+++++GP+G+GKTT+   L G  +    G I   G+         + R 
Sbjct: 22  NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPT-GGTILLRGQHIEGLPGHQIARM 80

Query: 173 TGFVT--QDDVLYPHLTVLETL-----------SYAALLRLPKKLTRE-EKIEQAEMVIM 218
            G V   Q   L+  +TV+E L            ++ LL+ P     E E +++A   + 
Sbjct: 81  -GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLE 139

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            +GL    N   G      ++ G+++R+ I + M+  P  L+LDEP +GL+    + +  
Sbjct: 140 RVGLLEHANRQAG-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDE 194

Query: 279 TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            +  L       +  I      +  + D++ V+++G+P+ +G   ++
Sbjct: 195 LIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEI 241

Length = 255

>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 50/150 (33%), Positives = 84/150 (56%), Gaps = 13/150 (8%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--LKRKTGFVTQDD 180
           V+ GE +A+LGPSG+GK+TLL  +AG L    SG +T NG+  +++   +R    + Q++
Sbjct: 22  VERGERVAILGPSGAGKSTLLNLIAGFLTPA-SGSLTLNGQDHTTTPPSRRPVSMLFQEN 80

Query: 181 VLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239
            L+ HLTV + +    L   P  KL   ++ +   +   ++G+      + G      +S
Sbjct: 81  NLFSHLTVAQNI---GLGLNPGLKLNAAQREKLHAIA-RQMGIEDLLARLPG-----QLS 131

Query: 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
           GG+R+RV++ + ++     LLLDEP S LD
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALD 161

Length = 232

>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 76/224 (33%), Positives = 106/224 (47%), Gaps = 29/224 (12%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF-SGKITYNGR---QFSSSLK 170
           +L G++  V+PGE+ A++GP+GSGK+TL   LAGR   +   G + + G+   + S   +
Sbjct: 16  ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDR 75

Query: 171 RKTG--FVTQDDVLYPHLT---VLET-LSYAALLRLPKKLTR-------EEKIEQAEMVI 217
              G     Q  V  P ++    L+T L+     R  + L R       EEKI   +M  
Sbjct: 76  AGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKM-- 133

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            E  LTR  N         G SGGE+KR  I Q  ++ P   +LDE  SGLD   A +IV
Sbjct: 134 PEDLLTRSVNV--------GFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKIV 184

Query: 278 AT-LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           A  +  L  G R+ I   H      Y   D V VL +G  + SG
Sbjct: 185 ADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228

Length = 248

>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 76.0 bits (188), Expect = 2e-15
 Identities = 47/183 (25%), Positives = 83/183 (45%), Gaps = 37/183 (20%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-----GKFSGKITYNGRQFSSS- 168
            L  ++  +   ++ A++GPSG GK+TLL  L  R+       +  G++  +G+      
Sbjct: 22  ALKDINLDIPKNKVTALIGPSGCGKSTLLRCL-NRMNDLIPGARVEGEVLLDGKNIYDPK 80

Query: 169 -----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
                L+R+ G V Q    +P +++ + ++Y   L   K    +E +E +        L 
Sbjct: 81  VDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESS--------LK 131

Query: 224 ----------RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
                     R   S        G+SGG+++R+ I + + V P  LL+DEPTS LD  + 
Sbjct: 132 KAALWDEVKDRLHKSA------LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPIST 185

Query: 274 QRI 276
            +I
Sbjct: 186 LKI 188

Length = 253

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 80.1 bits (197), Expect = 2e-15
 Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 16/213 (7%)

Query: 127  ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL---KRKTGFVTQDDVLY 183
            ++ A LG +G+GKTT L+ L G L    SG +   G+   ++L   ++  G   Q ++L+
Sbjct: 957  QITAFLGHNGAGKTTTLSILTGLLPPT-SGTVLVGGKDIETNLDAVRQSLGMCPQHNILF 1015

Query: 184  PHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGER 243
             HLTV E + + A L   K  + EE   + E ++ + GL   RN        + +SGG +
Sbjct: 1016 HHLTVAEHILFYAQL---KGRSWEEAQLEMEAMLEDTGLHHKRNEEA-----QDLSGGMQ 1067

Query: 244  KRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI-TTIHQPSSRLY 302
            +++S+    + +   ++LDEPTSG+D  + +R +  L    R GRT+I +T H   + L 
Sbjct: 1068 RKLSVAIAFVGDAKVVVLDEPTSGVDPYS-RRSIWDLLLKYRSGRTIIMSTHHMDEADL- 1125

Query: 303  RMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYV 335
             + D++ ++S+G    SG    + + FG+  Y+
Sbjct: 1126 -LGDRIAIISQGRLYCSGTPLFLKNCFGTGFYL 1157

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

 Score = 75.7 bits (187), Expect = 3e-15
 Identities = 54/222 (24%), Positives = 97/222 (43%), Gaps = 26/222 (11%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKR 171
               L  +S  +  GE + ++G +G+GK+TLL  +AG  +   SGK+   G+  +  ++ 
Sbjct: 39  EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPT-SGKVKVTGK-VAPLIEL 96

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI--MELG--LTRCRN 227
             GF        P LT  E +    L+     LTR+E  E+ + +I   ELG  + +   
Sbjct: 97  GAGFD-------PELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQ--- 143

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
                P+ +  S G   R++      V P  LLLDE  +  D+   ++ +  L  L    
Sbjct: 144 -----PV-KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKN 197

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
           +T++   H   + + +  D+ + L  G     G   +V+  +
Sbjct: 198 KTIVLVSHDLGA-IKQYCDRAIWLEHGQIRMEGSPEEVIPAY 238

Length = 249

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 75.3 bits (186), Expect = 3e-15
 Identities = 71/233 (30%), Positives = 112/233 (48%), Gaps = 44/233 (18%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--------- 166
           LN +S  V PGEL  ++GP+G+GKTT++  + G+ R    G + + G   +         
Sbjct: 18  LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD-EGSVLFGGTDLTGLPEHQIAR 76

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAA------LLRLPKKLTREEKIEQAEMVIMEL 220
           + + RK  F  Q   ++ +LTV E L  A          L  +L+ EEK ++ E V+  +
Sbjct: 77  AGIGRK--F--QKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEK-DRIEEVLETI 131

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV--NPSCLLLDEPTSGLDSTTAQRIVA 278
           GL    + + G      +S G+++ + IG  ML+  +P  LLLDEP +G+     ++   
Sbjct: 132 GLADEADRLAG-----LLSHGQKQWLEIG--MLLMQDPKLLLLDEPVAGMTDEETEKTAE 184

Query: 279 TLRGLARGGRTVITTIHQPSSRLYRM-F-----DKVVVLSEGSPIYSGRAAQV 325
            L+ LA G  +V+   H        M F     DKV VL +GS +  G   QV
Sbjct: 185 LLKSLA-GKHSVVVVEHD-------MEFVRSIADKVTVLHQGSVLAEGSLDQV 229

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 75.4 bits (186), Expect = 3e-15
 Identities = 63/224 (28%), Positives = 108/224 (48%), Gaps = 25/224 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK----- 170
           LN +S  V PGEL  ++GP+G+GKTTL+  + G+ R +  G++ ++G    + L      
Sbjct: 21  LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQ-EGEVLFDGDTDLTKLPEHRIA 79

Query: 171 -RKTGFVTQDDVLYPHLTVLETLSYA--------ALLRLPKKLTREEKIEQAEMVIMELG 221
               G   Q   ++ +LTV E L  A        A L    +L  EE+  + + ++  +G
Sbjct: 80  RAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFA--RLRAEER-RRIDELLATIG 136

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
           L   R+ +        +S G+++ + IG  +  +P  LLLDEP +G+     ++    L+
Sbjct: 137 LGDERDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK 191

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            LA    +++   H     +  + DKV VL EGS +  G   +V
Sbjct: 192 SLAG-KHSILVVEHD-MGFVREIADKVTVLHEGSVLAEGSLDEV 233

Length = 249

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 78.1 bits (193), Expect = 4e-15
 Identities = 53/183 (28%), Positives = 82/183 (44%), Gaps = 43/183 (23%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           +L  VS  + PGE + ++G +G+GK+TLL  LAG L    SG++T         L+   G
Sbjct: 18  LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEP-DSGEVTR-----PKGLR--VG 69

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE----------------------- 211
           +++Q+  L P  TVL+ +       L + L   E+                         
Sbjct: 70  YLSQEPPLDPEKTVLDYV-IEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDG 128

Query: 212 -----QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
                +AE  ++ LG       V        +SGG R+RV++ + +L  P  LLLDEPT+
Sbjct: 129 WTLEARAEEALLGLGFPDEDRPV------SSLSGGWRRRVALARALLEEPDLLLLDEPTN 182

Query: 267 GLD 269
            LD
Sbjct: 183 HLD 185

Length = 530

>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 75.6 bits (186), Expect = 4e-15
 Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 26/237 (10%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-------KFSGKITYNGR 163
           R  ++L  +S  ++PG + A+LG +G+GK+TLL ALAG L G       + +G +T NG 
Sbjct: 12  RHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE 71

Query: 164 QFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
             ++     L R    + Q        +  E +    L R P    R   +   +  I  
Sbjct: 72  PLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVL---LGRYPHA-RRAGALTHRDGEIAW 127

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQ---------EMLVNPSCLLLDEPTSGLDS 270
             L     + + G     +SGGE  RV   +         +    P  LLLDEPT+ LD 
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187

Query: 271 TTAQRIVATLRGLARGGRT-VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
               R++ T+R LAR     V+  +H P+    R  D++ +L++G+ +  G  A V+
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHDPNLAA-RHADRIAMLADGAIVAHGAPADVL 243

Length = 272

>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional

 Score = 75.6 bits (186), Expect = 4e-15
 Identities = 69/215 (32%), Positives = 104/215 (48%), Gaps = 27/215 (12%)

Query: 125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDD 180
            G++  ++G +GSGK+TLL  L GR +    G+I  + +   S    +  RK  ++ Q  
Sbjct: 36  AGKVTGLIGHNGSGKSTLLKML-GRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQL 94

Query: 181 VLYPHLTVLETLS------YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
                +TV E ++      + AL R        EK+E+A   I  +GL    + +V    
Sbjct: 95  PAAEGMTVRELVAIGRYPWHGALGRF--GAADREKVEEA---ISLVGLKPLAHRLVDS-- 147

Query: 235 FRGISGGERKRVSIGQEMLV--NPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVI 291
              +SGGER+R  I   MLV  +  CLLLDEPTS LD      ++A +  L++  G TVI
Sbjct: 148 ---LSGGERQRAWIA--MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVI 202

Query: 292 TTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
             +H   +   R  D +V L  G  I  G  A++M
Sbjct: 203 AVLHD-INMAARYCDYLVALRGGEMIAQGTPAELM 236

Length = 265

>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

 Score = 77.7 bits (192), Expect = 6e-15
 Identities = 61/228 (26%), Positives = 105/228 (46%), Gaps = 18/228 (7%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKT----TLLTALAGRLRGKFSGKITYNGRQFSS 167
           TV  + G+S  ++ GE LA++G SGSGK+    ++L  L        SG I ++G    +
Sbjct: 22  TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81

Query: 168 SLKRKTGFVTQDDV----------LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI 217
           + +R+   V  + +          L P  T+ + L  A +LRL + L+R     +A  ++
Sbjct: 82  ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQL--AEVLRLHRGLSRAAARARALELL 139

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
             +G+      +   P    +SGG+R+RV I   +   P  L+ DEPT+ LD T   +I+
Sbjct: 140 ELVGIPEPEKRLDAYP--HELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQIL 197

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
             L+ L       I  I      + +  D+V V+  G  + +G    +
Sbjct: 198 DLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTETL 245

Length = 534

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 76.8 bits (189), Expect = 1e-14
 Identities = 58/211 (27%), Positives = 100/211 (47%), Gaps = 19/211 (9%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-----SSLK 170
           ++ VS  ++ GE+L + G  G+G+T L+ AL G   GKF G +  NG+         +++
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335

Query: 171 RKTGFVTQD---DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
                V +D     + P L V + ++ + L     K+  +     AE+ I+   + R + 
Sbjct: 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRID---AAAELQIIGSAIQRLKV 392

Query: 228 SVVGGPL-FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
                 L    +SGG +++  + + +L NP  L+LDEPT G+D      I   +  LA+ 
Sbjct: 393 KTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQE 452

Query: 287 GRTVITTIHQPSSRLYRMF---DKVVVLSEG 314
           G  +I      SS L  +    D+V+V+ EG
Sbjct: 453 GVAIIVV----SSELAEVLGLSDRVLVIGEG 479

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

 Score = 73.1 bits (180), Expect = 1e-14
 Identities = 51/190 (26%), Positives = 86/190 (45%), Gaps = 19/190 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSLKR 171
           + + +S  +  GE L + GP+G+GKTTLL  LAG LR   +G++ + G   +    S  +
Sbjct: 17  LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQ 75

Query: 172 KTGFVTQDDVLYPHLTVLETLS-YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
              ++     +   LT LE L  +          T  E + Q        GL       +
Sbjct: 76  ALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV-------GLAG-----L 123

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCL-LLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
                  +S G+++RV++ + + ++P+ L +LDEP + LD      + A +   A  G  
Sbjct: 124 EDLPVGQLSAGQQRRVALAR-LWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGI 182

Query: 290 VITTIHQPSS 299
           V+ T HQP  
Sbjct: 183 VLLTTHQPLP 192

Length = 209

>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional

 Score = 74.1 bits (182), Expect = 1e-14
 Identities = 65/223 (29%), Positives = 107/223 (47%), Gaps = 26/223 (11%)

Query: 112 TVSVLNGVSGM------VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           TV+  NG + +      V  G + A++G +GSGK+TL  AL G +R   SGKI+  G+  
Sbjct: 13  TVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLA-SGKISILGQPT 71

Query: 166 SSSLKRK-TGFVTQDD-------VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI 217
             +L++    +V Q +       VL   + ++    +   LR  KK  R+        V 
Sbjct: 72  RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVD 131

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
           M       R+  +G      +SGG++KRV + + +      +LLDEP +G+D  T  RI+
Sbjct: 132 M----VEFRHRQIGE-----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARII 182

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           + LR L   G+T++ + H   S     F    V+ +G+ + SG
Sbjct: 183 SLLRELRDEGKTMLVSTHNLGS--VTEFCDYTVMVKGTVLASG 223

Length = 272

>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein

 Score = 76.9 bits (189), Expect = 1e-14
 Identities = 68/211 (32%), Positives = 104/211 (49%), Gaps = 22/211 (10%)

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTG 174
           VS   K G+ +A++GP+G+GKTTL+  L  R+     G+I  +G   ++    SL++   
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQ-RVYDPTVGQILIDGIDINTVTRESLRKSIA 412

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-IMELGLTRCRN--SVVG 231
            V QD  L+   ++ E +         +  T EE  E A+     +  L R     ++VG
Sbjct: 413 TVFQDAGLFNR-SIRENIRLGR-----EGATDEEVYEAAKAAAAHDFILKRSNGYDTLVG 466

Query: 232 GPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
               RG  +SGGER+R++I + +L N   L+LDE TS LD  T  R+   +  L R  RT
Sbjct: 467 E---RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDAL-RKNRT 522

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
                H+ S+   R  D V+ L +G  I  G
Sbjct: 523 TFIIAHRLST--VRNADLVLFLDQGRLIEKG 551

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585

>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.5 bits (180), Expect = 2e-14
 Identities = 68/233 (29%), Positives = 111/233 (47%), Gaps = 36/233 (15%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFSS 167
              L+G+S   +  EL A++GPSG GK+T L  L  R+       K +G+I + G+    
Sbjct: 17  YEALHGISLDFEEKELTALIGPSGCGKSTFLRCL-NRMNDDIENIKITGEIKFEGQNIYG 75

Query: 168 S------LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP----KKLTR---EEKIEQAE 214
           S      L+++ G V Q    +P  +V + ++Y   L++     K+L     EE ++QA 
Sbjct: 76  SKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYG--LKIAGVKDKELIDQRVEESLKQAA 132

Query: 215 MVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
            +  E      RN+       +  SGG+++R+ I + + V P  +LLDEPTS LD  ++ 
Sbjct: 133 -IWKETKDNLDRNA-------QAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSS 184

Query: 275 RIVATLRGLARGGRTVITTIH--QPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            I  TL  L +   T I   H  Q + R+    D+   L  G  I +G   ++
Sbjct: 185 EIEETLMEL-KHQYTFIMVTHNLQQAGRIS---DQTAFLMNGDLIEAGPTEEM 233

Length = 251

>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 73.3 bits (180), Expect = 2e-14
 Identities = 60/225 (26%), Positives = 108/225 (48%), Gaps = 18/225 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL--------AGRLRG--KFSGKITYNGRQ 164
           V+ GV   +    + A++GPSG GK+TLL             R+ G  +  G+  Y+   
Sbjct: 19  VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV 78

Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL-TREEKIEQAEMVIMELGL- 222
               ++R+ G V Q    +PHLT+ + +  A  ++L   + +++E  E+ E  + +  L 
Sbjct: 79  DPIEVRREVGMVFQYPNPFPHLTIYDNV--AIGVKLNGLVKSKKELDERVEWALKKAALW 136

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
              ++ +   P    +SGG+R+R+ I + + + P  LL+DEPT+ +D     +I   L  
Sbjct: 137 DEVKDRLNDYP--SNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE 194

Query: 283 LARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           L +   T++   H P ++  R+ D V  L  G  I  G   +V +
Sbjct: 195 L-KKEYTIVLVTHSP-AQAARVSDYVAFLYLGKLIEVGPTRKVFE 237

Length = 253

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 74.9 bits (184), Expect = 3e-14
 Identities = 56/181 (30%), Positives = 86/181 (47%), Gaps = 14/181 (7%)

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--SLKRKTGFV 176
           VS  +  GE+ A+LG SG GK+TLL  LAG      +G+I  +G   S     +R    +
Sbjct: 38  VSLTIYKGEIFALLGASGCGKSTLLRMLAG-FEQPTAGQIMLDGVDLSHVPPYQRPINMM 96

Query: 177 TQDDVLYPHLTVLETLSYAALL-RLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
            Q   L+PH+TV + +++     +LPK        E   +V M+    R  +        
Sbjct: 97  FQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQ------- 149

Query: 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI-VATLRGLARGGRTVITTI 294
             +SGG+R+RV++ + +   P  LLLDEP   LD     R+ +  +  L R G T +   
Sbjct: 150 --LSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVT 207

Query: 295 H 295
           H
Sbjct: 208 H 208

Length = 377

>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional

 Score = 74.7 bits (183), Expect = 3e-14
 Identities = 57/214 (26%), Positives = 103/214 (48%), Gaps = 19/214 (8%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG--------RQFSSSLKRKTG 174
           ++ GE+  ++G SGSGK+T++  L  RL     G++  +G         +     ++K  
Sbjct: 51  IEEGEIFVIMGLSGSGKSTMVRLL-NRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIA 109

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
            V Q   L PH+TVL+  ++   L     +  EE+ E+A   + ++GL    N     P 
Sbjct: 110 MVFQSFALMPHMTVLDNTAFGMEL---AGINAEERREKALDALRQVGL---ENYAHSYP- 162

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRTVITT 293
              +SGG R+RV + + + +NP  LL+DE  S LD      +   L  L A+  RT++  
Sbjct: 163 -DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFI 221

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            H     + R+ D++ ++  G  +  G   ++++
Sbjct: 222 SHDLDEAM-RIGDRIAIMQNGEVVQVGTPDEILN 254

Length = 400

>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.3 bits (178), Expect = 5e-14
 Identities = 66/229 (28%), Positives = 110/229 (48%), Gaps = 39/229 (17%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----LK 170
            L  VS  +  GE +A+LG +GSGK+T+   L G L+ + SG+I  +G   S      ++
Sbjct: 24  ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQ-SGEIKIDGITISKENLKEIR 82

Query: 171 RKTGFVTQD-DVLYPHLTV-------LETLSYAALLRLPKKLTREE---KIEQ-AEMVIM 218
           +K G + Q+ D  +   TV       LE           KK+  ++    I+  A+ V M
Sbjct: 83  KKIGIIFQNPDNQFIGATVEDDIAFGLEN----------KKVPPKKMKDIIDDLAKKVGM 132

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
           E  L +        P    +SGG+++RV+I   + +NP  ++ DE TS LD    + I  
Sbjct: 133 EDYLDK-------EPQN--LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKK 183

Query: 279 TLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            +  L +   +T+I+  H     +  + DKV+V SEG  I  G+  +++
Sbjct: 184 IMVDLRKTRKKTLISITHDMDEAI--LADKVIVFSEGKLIAQGKPKEIL 230

Length = 271

>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional

 Score = 71.4 bits (175), Expect = 5e-14
 Identities = 60/210 (28%), Positives = 104/210 (49%), Gaps = 25/210 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-------S 168
           L GV+  ++PGE+  + G SG+GK+TLL  + G  R   +GKI ++G   +         
Sbjct: 18  LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPS-AGKIWFSGHDITRLKNREVPF 76

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-TRCRN 227
           L+R+ G + QD  L    TV + ++   ++      + ++   +    + ++GL  + +N
Sbjct: 77  LRRQIGMIFQDHHLLMDRTVYDNVAIPLII---AGASGDDIRRRVSAALDKVGLLDKAKN 133

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
             +       +SGGE++RV I + ++  P+ LL DEPT  LD   ++ I+       R G
Sbjct: 134 FPIQ------LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVG 187

Query: 288 RTVITTIHQP---SSRLYRMFDKVVVLSEG 314
            TV+   H     S R YR    ++ LS+G
Sbjct: 188 VTVLMATHDIGLISRRSYR----MLTLSDG 213

Length = 222

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 75.8 bits (186), Expect = 6e-14
 Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 22/269 (8%)

Query: 123  VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK---RKTGFVTQD 179
            V+PGE   +LG +G+GKTT    L G      SG  T  G+   +++    +  G+  Q 
Sbjct: 1962 VRPGECFGLLGVNGAGKTTTFKMLTGDTTVT-SGDATVAGKSILTNISDVHQNMGYCPQF 2020

Query: 180  DVLYPHLTVLETLS-YAALLRLPKKLTREEKIEQ-AEMVIMELGLTRCRNSVVGGPLFRG 237
            D +   LT  E L  YA L  +P      E+IE+ A   I  LGL+   + + G      
Sbjct: 2021 DAIDDLLTGREHLYLYARLRGVPA-----EEIEKVANWSIQSLGLSLYADRLAGT----- 2070

Query: 238  ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
             SGG ++++S    ++  P  +LLDEPT+G+D    + +  T+  + R GR V+ T H  
Sbjct: 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHS- 2129

Query: 298  SSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPD 357
                  +  ++ ++ +G+    G    +   FG  GY+    + +P D   DL   + P 
Sbjct: 2130 MEECEALCTRLAIMVKGAFQCLGTIQHLKSKFGD-GYIVTMKIKSPKD---DLLPDLNP- 2184

Query: 358  VKQDDQLEFHGRLEHHDDQNATKQSLISS 386
            V+Q  Q  F G ++     N  +  + SS
Sbjct: 2185 VEQFFQGNFPGSVQRERHYNMLQFQVSSS 2213

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 74.3 bits (183), Expect = 7e-14
 Identities = 60/217 (27%), Positives = 104/217 (47%), Gaps = 24/217 (11%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF-- 165
           KQ   V VL G+   +  GE+ A+LG +G+GK+TL+  +AG +    SG +   G     
Sbjct: 19  KQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAG-IVPPDSGTLEIGGNPCAR 77

Query: 166 -SSSLKRKTG--FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
            + +   + G   V Q+ +L+P+L+V E +    L  LPK+    +K++Q   ++  LG 
Sbjct: 78  LTPAKAHQLGIYLVPQEPLLFPNLSVKENI----LFGLPKRQASMQKMKQ---LLAALG- 129

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
            +       G L       +R+ V I + ++ +   L+LDEPT+ L     +R+ + +R 
Sbjct: 130 CQLDLDSSAGSL----EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRE 185

Query: 283 LARGGRTVITTIH------QPSSRLYRMFDKVVVLSE 313
           L   G  ++   H      Q + R+  M D  + LS 
Sbjct: 186 LLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222

Length = 510

>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 71.5 bits (175), Expect = 7e-14
 Identities = 62/223 (27%), Positives = 107/223 (47%), Gaps = 16/223 (7%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-----RGKFSGKITYNGRQF-- 165
           V VL+GV+  +    + A++GPSGSGK+TLL     RL       + SG++  +G+    
Sbjct: 16  VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVF-NRLIELYPEARVSGEVYLDGQDIFK 74

Query: 166 --SSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL-RLPKKLTREEKIEQAEMVIMELGL 222
                L+R+   V Q     P+L++ E ++    L RL K  +++E  E+    + +  L
Sbjct: 75  MDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVK--SKKELQERVRWALEKAQL 132

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
                  +  P  + +SGG+++R+ I + +   P  LL DEPT+ LD     +I +    
Sbjct: 133 WDEVKDRLDAPAGK-LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191

Query: 283 LARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           L +   T++   H P  +  R+ D V  L +G  +  G   +V
Sbjct: 192 LKK-DMTIVLVTHFP-QQAARISDYVAFLYKGQIVEWGPTREV 232

Length = 250

>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional

 Score = 73.2 bits (180), Expect = 8e-14
 Identities = 59/205 (28%), Positives = 109/205 (53%), Gaps = 17/205 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF--SSSLKRK 172
           V++ ++  +K G ++ +LGPSG GKTT+L  +AG L     G+I  +G      S  +R 
Sbjct: 21  VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAG-LEKPTEGQIFIDGEDVTHRSIQQRD 79

Query: 173 TGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
              V Q   L+PH+++ E + Y   +L +PK+  ++   E  E+V +     R  +    
Sbjct: 80  ICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQ--- 136

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                 ISGG+++RV++ + +++ P  LL DEP S LD+   + +   +R L +  +  I
Sbjct: 137 ------ISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQ--QFNI 188

Query: 292 TTIH--QPSSRLYRMFDKVVVLSEG 314
           T+++     S  + + D V+V+++G
Sbjct: 189 TSLYVTHDQSEAFAVSDTVIVMNKG 213

Length = 351

>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C

 Score = 71.0 bits (174), Expect = 9e-14
 Identities = 60/204 (29%), Positives = 99/204 (48%), Gaps = 12/204 (5%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----LK 170
           VL  VS  + PGE+ A++GPSGSGK+T++ AL         G++  +G+  S      L 
Sbjct: 29  VLQDVSFTLHPGEVTALVGPSGSGKSTVV-ALLENFYQPQGGQVLLDGKPISQYEHKYLH 87

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
            K   V Q+ VL+   ++ + ++Y       + +    +   A   I EL          
Sbjct: 88  SKVSLVGQEPVLFAR-SLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGE 146

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
            G     +SGG+++RV+I + ++ NP  L+LDE TS LD+ + Q++   L       RTV
Sbjct: 147 KGSQ---LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTV 202

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEG 314
           +   H+ S       D+++VL  G
Sbjct: 203 LVIAHRLS--TVERADQILVLDGG 224

TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226

>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 67/227 (29%), Positives = 102/227 (44%), Gaps = 51/227 (22%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----LKR 171
           L  VS  V  GE +A++G +GSGK+TL   L G L  + +G IT  G   S      ++R
Sbjct: 23  LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPE-AGTITVGGMVLSEETVWDVRR 81

Query: 172 KTGFVTQ------------DDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA----EM 215
           + G V Q            DDV +     LE             + REE +E+       
Sbjct: 82  QVGMVFQNPDNQFVGATVQDDVAFG----LEN----------IGVPREEMVERVDQALRQ 127

Query: 216 VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           V ME  L R  +          +SGG+++RV+I   + + P  ++LDE TS LD    + 
Sbjct: 128 VGMEDFLNREPHR---------LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRRE 178

Query: 276 IVATLRGLARGGR-TVITTIHQ-----PSSRLYRMFDKVVVLSEGSP 316
           ++ T+R L      TV++  H       + R+  M +K  +L EG+P
Sbjct: 179 VLETVRQLKEQKGITVLSITHDLDEAAQADRVIVM-NKGEILEEGTP 224

Length = 279

>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 58/240 (24%), Positives = 110/240 (45%), Gaps = 32/240 (13%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT----YNGR 163
           KQ   +  LN +S   +  ++  ++G SGSGK+TL+T   G ++ K+ G I     Y G 
Sbjct: 34  KQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKY-GTIQVGDIYIGD 92

Query: 164 QFSSS----------------LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL--T 205
           + ++                 L+R+   V Q    +P   + +      ++  P  L   
Sbjct: 93  KKNNHELITNPYSKKIKNFKELRRRVSMVFQ----FPEYQLFKDTIEKDIMFGPVALGVK 148

Query: 206 REEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265
           + E  + A+  + ++GL    +S +    F G+SGG+++RV+I   + + P  L+ DEPT
Sbjct: 149 KSEAKKLAKFYLNKMGL---DDSYLERSPF-GLSGGQKRRVAIAGILAIQPEILIFDEPT 204

Query: 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           +GLD      ++  +       +TV    H     L  + D+V+V+ +G  + +G   ++
Sbjct: 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVL-EVADEVIVMDKGKILKTGTPYEI 263

Length = 320

>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional

 Score = 73.9 bits (182), Expect = 1e-13
 Identities = 68/237 (28%), Positives = 122/237 (51%), Gaps = 41/237 (17%)

Query: 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTT---LLTALAGRLRGKFSGKITYNG--- 162
             + V  L  ++  +  G+ +A++G SGSGK+T   LLT    R      G+I  +G   
Sbjct: 352 PGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLT----RFYDIDEGEILLDGHDL 407

Query: 163 RQFS-SSLKRKTGFVTQDDVLYPHL---TVLETLSYAALLRLPKKLTREEKIEQAEMVI- 217
           R ++ +SL+ +   V+Q+     HL   T+   ++YA      ++ +RE+  E A M   
Sbjct: 408 RDYTLASLRNQVALVSQN----VHLFNDTIANNIAYAR----TEQYSREQIEEAARMAYA 459

Query: 218 ------MELGLTRCRNSVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
                 M+ GL    ++V+G  G L   +SGG+R+R++I + +L +   L+LDE TS LD
Sbjct: 460 MDFINKMDNGL----DTVIGENGVL---LSGGQRQRIAIARALLRDSPILILDEATSALD 512

Query: 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           + + + I A L  L +  RT +   H+ S+      D+++V+ +G  +  G  A+++
Sbjct: 513 TESERAIQAALDELQK-NRTSLVIAHRLST--IEKADEILVVEDGEIVERGTHAELL 566

Length = 582

>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 73.6 bits (181), Expect = 1e-13
 Identities = 61/223 (27%), Positives = 108/223 (48%), Gaps = 24/223 (10%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS---- 167
               L  V+  +KPG++L + GP+GSGK+TLL +L  R      G I ++    +     
Sbjct: 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLL-SLIQRHFDVSEGDIRFHDIPLTKLQLD 385

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV--IME--LGLT 223
           S + +   V+Q   L+         + A  + L +    +++IE    +  + +  L L 
Sbjct: 386 SWRSRLAVVSQTPFLFSD-------TVANNIALGRPDATQQEIEHVARLASVHDDILRLP 438

Query: 224 RCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
           +  ++ VG    RG+  SGG+++R+SI + +L+N   L+LD+  S +D  T  +I+  LR
Sbjct: 439 QGYDTEVGE---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLR 495

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQ 324
                GRTVI + H+ S+       +++V+  G     G   Q
Sbjct: 496 QWGE-GRTVIISAHRLSA--LTEASEILVMQHGHIAQRGNHDQ 535

Length = 569

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 72/250 (28%), Positives = 104/250 (41%), Gaps = 30/250 (12%)

Query: 74  SLHPVTLKFE-DVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAML 132
            L  V+  +      S +L            GE          L  VS  V  GE + ++
Sbjct: 2   ELENVSKSYPTYKGGSSSLKKLGILGRKGEVGE-------FWALKDVSFEVPRGERIGLI 54

Query: 133 GPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLE-T 191
           G +G+GK+TLL  LAG      SG +T  GR  SS L    GF        P LT  E  
Sbjct: 55  GRNGAGKSTLLRLLAGIYP-PDSGTVTVRGR-VSSLLGLGGGFN-------PELTGRENI 105

Query: 192 LSYAALLRLPKKLTREEKIEQAEMVIMEL-GLTRCRNSVVGGPLFRGISGGERKRVSIGQ 250
                LL L +K   E+  E     I+E   L    +  V     +  S G + R++   
Sbjct: 106 YLNGRLLGLSRKEIDEKIDE-----IIEFSELGDFIDLPV-----KTYSSGMKARLAFAI 155

Query: 251 EMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV 310
              + P  LL+DE  +  D+   ++    LR L + G+TVI   H PSS + R+ D+ +V
Sbjct: 156 ATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSS-IKRLCDRALV 214

Query: 311 LSEGSPIYSG 320
           L +G   + G
Sbjct: 215 LEKGKIRFDG 224

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 59/211 (27%), Positives = 105/211 (49%), Gaps = 17/211 (8%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----LKR 171
           L G+S  +  G   A+LGP+G+GK+TLL  L G +     G++   GR+ ++     ++ 
Sbjct: 21  LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNG-IYLPQRGRVKVMGREVNAENEKWVRS 79

Query: 172 KTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           K G V QD  D ++   TV + +++  +      L ++E   + E  +  + +   R+  
Sbjct: 80  KVGLVFQDPDDQVFS-STVWDDVAFGPV---NMGLDKDEVERRVEEALKAVRMWDFRDK- 134

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
              P +  +S G++KRV+I   + ++P  ++LDEP + LD    + ++  L  L   G+T
Sbjct: 135 ---PPYH-LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKT 190

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           VI   H          D+V+VL EG  +  G
Sbjct: 191 VIVATHDVDLAA-EWADQVIVLKEGRVLAEG 220

Length = 274

>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 65/236 (27%), Positives = 97/236 (41%), Gaps = 49/236 (20%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF-SGKITYNGR---QFSSSLK 170
           +L G++  +  GE+ A++GP+GSGK+TL   +AG    K   G I + G          +
Sbjct: 22  ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEER 81

Query: 171 RKTGF------------VTQDDVL---------YPHLTVLETLSYAALLRLPKKLTREEK 209
              G             V+  D L         +  L  L+ L +  ++         EK
Sbjct: 82  AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIIN--------EK 133

Query: 210 IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
           ++   M      L+R  N         G SGGE+KR  I Q  L++    +LDE  SGLD
Sbjct: 134 LKLVGM--DPSFLSRNVNE--------GFSGGEKKRNEILQMALLDSELAILDETDSGLD 183

Query: 270 STTAQRIVAT-LRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEGSPIYSGRA 322
              A +I+A  +  L     ++I   H    RL  Y   D V V+  G  I +G A
Sbjct: 184 -IDALKIIAEGINKLMTSENSIILITHYQ--RLLDYIKPDYVHVMQNGKIIKTGDA 236

Length = 252

>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional

 Score = 71.5 bits (176), Expect = 2e-13
 Identities = 54/186 (29%), Positives = 87/186 (46%), Gaps = 35/186 (18%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL----RGKFSGKITYNGR 163
           K  R V  L+GVS  ++ G+ LA++G SG GK+TL      RL         G++ Y G+
Sbjct: 23  KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTL-----ARLLTMIETPTGGELYYQGQ 77

Query: 164 QFS-------SSLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAE 214
                       L++K   V Q+    L P   V + L     L +   L+  E+ E+A 
Sbjct: 78  DLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQIL--EEPLLINTSLSAAERREKAL 135

Query: 215 MVIMELGLTRCRNSVVGGPLFRG-----ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
            ++ ++GL          P          SGG+R+R++I + ++++P  ++ DEP S LD
Sbjct: 136 AMMAKVGLR---------PEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186

Query: 270 -STTAQ 274
            S  AQ
Sbjct: 187 VSVQAQ 192

Length = 327

>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 57/209 (27%), Positives = 92/209 (44%), Gaps = 16/209 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------- 167
           VL  VS  ++ GE + +LG SG GK+TL   L G L     G +++ G+           
Sbjct: 26  VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLG-LEKPAQGTVSFRGQDLYQLDRKQRR 84

Query: 168 SLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
           + +R    V QD    + P +TV + +     LR    L   E+  +   ++  +GL   
Sbjct: 85  AFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGL--- 139

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
             S     L R +SGG+ +R++I + + V P  ++LDE  S LD      I+  LR L +
Sbjct: 140 -RSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQ 198

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
              T    I      +     +V V+ +G
Sbjct: 199 AFGTAYLFITHDLRLVQSFCQRVAVMDKG 227

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265

>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 54/185 (29%), Positives = 83/185 (44%), Gaps = 29/185 (15%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVL 182
           +  GEL+ + GP+G+GKT+LL  LAG L    +G++ + G        R+       D+L
Sbjct: 24  LNAGELVQIEGPNGAGKTSLLRILAG-LARPDAGEVLWQGEPI-----RRQRDEYHQDLL 77

Query: 183 Y--------PHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGLTRCRNSVVGGP 233
           Y          LT LE L +   L  P     +E + +A   V    GL      V    
Sbjct: 78  YLGHQPGIKTELTALENLRFYQRLHGP---GDDEALWEALAQV----GLAG-FEDVPVRQ 129

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG-LARGGRTVIT 292
           L    S G+++RV++ +  L      +LDEP + +D     R+ A L     +GG  ++T
Sbjct: 130 L----SAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILT 185

Query: 293 TIHQP 297
           T HQ 
Sbjct: 186 T-HQD 189

Length = 204

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 72.1 bits (177), Expect = 4e-13
 Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 30/218 (13%)

Query: 117 NGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-----SSLKR 171
             +S  V  GE+L   G  GSG+T L+  L G +  +  G+I  NG+  S      ++K+
Sbjct: 280 RDISFSVCRGEILGFAGLVGSGRTELMNCLFG-VDKRAGGEIRLNGKDISPRSPLDAVKK 338

Query: 172 KTGFVTQ---DDVLYPHLTVLETLSYAALLRLPK--------KLTREEKIEQAEMVIMEL 220
              ++T+   D+  +P+ ++ + ++ +  L+               E++  + +  ++ L
Sbjct: 339 GMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLAL 398

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
                  ++        +SGG +++V I + +   P  ++ DEPT G+D      I   +
Sbjct: 399 KCHSVNQNITE------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVM 452

Query: 281 RGLARGGRTVITTIHQPSSRLYRMF---DKVVVLSEGS 315
           R LA  G+ ++      SS L  +    D++ V  EG 
Sbjct: 453 RQLADDGKVILMV----SSELPEIITVCDRIAVFCEGR 486

Length = 510

>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 69.1 bits (169), Expect = 9e-13
 Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 24/214 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS------- 168
           L+ +S  ++ G  +A++G +GSGK+TL+      L+   SG IT  G   +         
Sbjct: 23  LDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPS-SGTITIAGYHITPETGNKNLK 81

Query: 169 -LKRKTGFVTQ--DDVLYPHLTVLETLSYAALLRLPKKL--TREEKIEQAEMVIMELGLT 223
            L++K   V Q  +  L+ + TVL+ + +      PK    + +E  E+A   + ++GL+
Sbjct: 82  KLRKKVSLVFQFPEAQLFEN-TVLKDVEFG-----PKNFGFSEDEAKEKALKWLKKVGLS 135

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                ++    F  +SGG+ +RV+I   M   P  L LDEP +GLD    + ++   +  
Sbjct: 136 ---EDLISKSPFE-LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY 191

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI 317
            + G TVI   H     +    D V+VL  G  I
Sbjct: 192 QKAGHTVILVTHNMDD-VAEYADDVLVLEHGKLI 224

Length = 287

>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein

 Score = 70.2 bits (172), Expect = 1e-12
 Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 13/222 (5%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAG-RLRGKFSGKITYNGRQFSSSLKR 171
           V  L+G+   V+PGE + + G +G+GK+TL+  L+G    G + G+I ++G    +S  R
Sbjct: 14  VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR 73

Query: 172 KT-----GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTR-EEKIEQAEMVIMELGLTRC 225
            T       + Q+  L P L+V E +     + LP           +A+ ++ EL L   
Sbjct: 74  DTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDAD 133

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
             +   G       GG+++ V I + +      L+LDEP+S L     + ++  +R L  
Sbjct: 134 NVTRPVGDY----GGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA 189

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            G   +   H+  + +  + D + V+ +G  + + +    M 
Sbjct: 190 HGVACVYISHK-LNEVKAVCDTICVIRDGQHVAT-KDMSTMS 229

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500

>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 68.5 bits (167), Expect = 1e-12
 Identities = 58/218 (26%), Positives = 108/218 (49%), Gaps = 19/218 (8%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ---FSS--SLK 170
           L  ++ ++K GE + ++G +GSGK+TL   L G LR +  GK+  +G     FS    ++
Sbjct: 18  LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQ-KGKVLVSGIDTGDFSKLQGIR 76

Query: 171 RKTGFVTQD-DVLYPHLTVLETLSYAAL-LRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
           +  G V Q+ +  +   TV E L++    L LP    R+    + +  + E+GL + R+ 
Sbjct: 77  KLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRK----RVDRALAEIGLEKYRHR 132

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
               P  + +SGG+ + V++   + + P CL+ DE TS LD  +   ++  ++ L   G+
Sbjct: 133 ---SP--KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGK 187

Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           T++   H          D+++V+  G  +  G    V+
Sbjct: 188 TIVYITHNLEE--LHDADRIIVMDRGKIVLEGEPENVL 223

Length = 274

>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.1 bits (166), Expect = 1e-12
 Identities = 59/216 (27%), Positives = 97/216 (44%), Gaps = 24/216 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFSS--- 167
           L G+       E+ A++GPSG GK+T L  L  R+         +G ++  G+   +   
Sbjct: 21  LKGIDLDFNQNEITALIGPSGCGKSTYLRTL-NRMNDLIPGVTITGNVSLRGQNIYAPNE 79

Query: 168 ---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQA--EMVIMELG 221
               L+++ G V Q    +P  ++ E + Y   L   K K   +E +E +  +  I +  
Sbjct: 80  DVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV 138

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
                 S +       +SGG+++RV I + + V P  +LLDEPTS LD  ++ +I   L 
Sbjct: 139 KDHLHESALS------LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLL 192

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI 317
            L R   T+I   H    +  R+ DK      G+ I
Sbjct: 193 EL-RDQYTIILVTHS-MHQASRISDKTAFFLTGNLI 226

Length = 252

>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional

 Score = 69.0 bits (169), Expect = 1e-12
 Identities = 71/239 (29%), Positives = 113/239 (47%), Gaps = 23/239 (9%)

Query: 99  FATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL--RGKFSG 156
           F+T  G+       V+ +N ++  ++ GE L ++G SGSGK+    AL G L   G+  G
Sbjct: 22  FSTPDGD-------VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG 74

Query: 157 KITYNGRQF----SSSLKR----KTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTR 206
             T+NGR+        L +    +   + QD +  L P++ V E L    +L L K +++
Sbjct: 75  SATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQL--MEVLMLHKGMSK 132

Query: 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
            E  E++  ++  + +   R  +   P     SGG R+RV I   +L  P  L+ DEPT+
Sbjct: 133 AEAFEESVRMLDAVKMPEARKRMKMYP--HEFSGGMRQRVMIAMALLCRPKLLIADEPTT 190

Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            LD T   +I+  L  L R   T I  I      +  + DKV+V+  G  +  G A  V
Sbjct: 191 ALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDV 249

Length = 330

>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 68.4 bits (167), Expect = 2e-12
 Identities = 62/207 (29%), Positives = 100/207 (48%), Gaps = 31/207 (14%)

Query: 130 AMLGPSGSGKTTLLTAL------------AGRLRGKFSGKITYNGRQFSSSLKRKTGFVT 177
           A++GPSG GK+T L A+             G L   F G+  Y        L++K G V 
Sbjct: 69  AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALM--FDGEDIYGKFTDEVLLRKKIGMVF 126

Query: 178 QDDVLYPHLTVLETLSYAALLR-LPKKLTREEKIEQA---EMVIMELGLTRCRNSVVGGP 233
           Q    +P  ++ + ++Y   L  +  K   EE +E++     +  E+     +N++    
Sbjct: 127 QKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNAL---- 181

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
              G+SGG+++R+ + + + V P  LLLDEPTS LD     +I   ++ L RG  T++  
Sbjct: 182 ---GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL-RGSYTIMIV 237

Query: 294 IH--QPSSRL--YRMFDKVVVLSEGSP 316
            H  Q +SR+  Y MF    VL E +P
Sbjct: 238 THNMQQASRVSDYTMFFYEGVLVEHAP 264

Length = 286

>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional

 Score = 67.4 bits (165), Expect = 2e-12
 Identities = 55/220 (25%), Positives = 104/220 (47%), Gaps = 30/220 (13%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTAL--------AGRLRGK--FSGKITYNGRQFSSSLKRK 172
           ++  ++ A++GPSG GK+T L  L        + ++ G+    G+  Y      + L+++
Sbjct: 26  IEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKR 85

Query: 173 TGFVTQDDVLYPHLTVLETLSYAAL---LRLPKKLTR--EEKIEQAEMVIMELGLTRCRN 227
            G V Q    +P +++ + ++Y      ++  KKL    E+ ++ A   + +    R + 
Sbjct: 86  VGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGA--ALWDEVKDRLKK 142

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
           S +G      +SGG+++R+ I + + V P  LL+DEPTS LD  +  +I   ++ L +  
Sbjct: 143 SALG------LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196

Query: 288 RTVITT--IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
             VI T  + Q S    R+ DK      G  +  G    +
Sbjct: 197 TIVIVTHNMQQAS----RISDKTAFFLNGEIVEFGDTVDL 232

Length = 250

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 54/174 (31%), Positives = 85/174 (48%), Gaps = 19/174 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-SLKRKT 173
            LNG+S  +  G+ + ++G +G+GK+TLL A+AG L+   SG+I  +G   +  S+ ++ 
Sbjct: 21  ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPT-SGQILIDGVDVTKKSVAKRA 79

Query: 174 GF---VTQD--DVLYPHLTVLETLSYAALLR------LPKKLTREEKIEQAEMVIMELGL 222
                V QD      P LT+ E L+ A   R            R     +  +  + LGL
Sbjct: 80  NLLARVFQDPLAGTAPELTIEENLALAE-SRGKKRGLSSALNERRRSSFRERLARLGLGL 138

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
               +  +G  L    SGG+R+ +S+    L  P  LLLDE T+ LD  TA+ +
Sbjct: 139 ENRLSDRIG--LL---SGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFV 187

Length = 263

>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 67.2 bits (164), Expect = 3e-12
 Identities = 43/161 (26%), Positives = 82/161 (50%), Gaps = 16/161 (9%)

Query: 127 ELLAMLGPSGSGKTTLLTALAGRLRG----KFSGKITYNGRQFSSS------LKRKTGFV 176
           E+ A++GPSG GK+T +  L   ++     K +G++ YNG            L++  G V
Sbjct: 39  EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMV 98

Query: 177 TQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-TRCRNSVVGGPLF 235
            Q    +P  ++ + ++Y    R+     +++  E  E  + ++ L    ++ +    L 
Sbjct: 99  FQKGNPFPQ-SIFDNVAYGP--RIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQAL- 154

Query: 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
             +SGG+++R+ I + +  NP  LL+DEPTS LD  + ++I
Sbjct: 155 -SLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKI 194

Length = 259

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 69.5 bits (170), Expect = 3e-12
 Identities = 58/196 (29%), Positives = 96/196 (48%), Gaps = 16/196 (8%)

Query: 99  FATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI 158
           F    G  N+ TR V  +  VS  + PGE L+++G SGSGK+T   AL  RL     G+I
Sbjct: 323 FPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALL-RLVESQGGEI 381

Query: 159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAAL--LRLPKKLTREEK 209
            +NG++  +       +L+R   F+ QD   Y  L   +T+  + +  LR+   L  +  
Sbjct: 382 IFNGQRIDTLSPGKLQALRRDIQFIFQDP--YASLDPRQTVGDSIMEPLRVHGLLPGKAA 439

Query: 210 IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
             +   ++  +GL    ++      F   SGG+R+R+ I + + +NP  ++ DE  S LD
Sbjct: 440 AARVAWLLERVGL-LPEHAWRYPHEF---SGGQRQRICIARALALNPKVIIADEAVSALD 495

Query: 270 STTAQRIVATLRGLAR 285
            +   +I+  L  L R
Sbjct: 496 VSIRGQIINLLLDLQR 511

Length = 623

>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 59/207 (28%), Positives = 94/207 (45%), Gaps = 35/207 (16%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SL 169
            VL  VS  VK GE + ++G +G+GK+TL+ AL  R      GKI  +G   S+     L
Sbjct: 22  PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALF-RFLEAEEGKIEIDGIDISTIPLEDL 80

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           +     + QD  L+   T+   L        P     +E+I  A + + E GL       
Sbjct: 81  RSSLTIIPQDPTLFSG-TIRSNLD-------PFDEYSDEEIYGA-LRVSEGGLN------ 125

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
                   +S G+R+ + + + +L  P  L+LDE T+ +D  T   I  T+R       T
Sbjct: 126 --------LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNS-T 176

Query: 290 VITTIHQPSSRLYRM--FDKVVVLSEG 314
           ++T  H    RL  +  +DK++V+  G
Sbjct: 177 ILTIAH----RLRTIIDYDKILVMDAG 199

Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 68.8 bits (169), Expect = 4e-12
 Identities = 60/242 (24%), Positives = 101/242 (41%), Gaps = 45/242 (18%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGKFSGKITYNGRQFS 166
           K    V  L+ VS  V+ GE++++ G +G+GK+TL+  L+G    G + G+I + G +  
Sbjct: 13  KTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQ 72

Query: 167 SSLKRKT---GFVT--QDDVLYPHLTVLET------------LSYAALLRLPKKLTREEK 209
           +S  R T   G     Q+  L   L+VLE             + Y A+    +KL  + K
Sbjct: 73  ASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLK 132

Query: 210 IE-QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL 268
           ++      +  LG                   G+++ V I + +      L+LDEPT+ L
Sbjct: 133 LDINPATPVGNLG------------------LGQQQLVEIAKALNKQARLLILDEPTASL 174

Query: 269 DSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF---DKVVVLSEGSPIYSGRAAQV 325
             +    ++  +R L   G   I   H    +L  +    D + V+ +G  I   R A  
Sbjct: 175 TESETAVLLDIIRDLKAHGIACIYISH----KLNEVKAISDTICVIRDGRHI-GTRPAAG 229

Query: 326 MD 327
           M 
Sbjct: 230 MT 231

Length = 506

>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 66.6 bits (162), Expect = 4e-12
 Identities = 54/203 (26%), Positives = 98/203 (48%), Gaps = 19/203 (9%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL--AGRLRG--------KFSGKITYN 161
           T   + G+S  +   ++ A++GPSG GK+T +  L     L G         F G+  Y+
Sbjct: 19  TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYD 78

Query: 162 GRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
            R   + L+R+ G V Q    +P +++ E ++Y   +R+  KL + +  E  E  +    
Sbjct: 79  PRININRLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEIVESALKGAA 135

Query: 222 L-TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           L    ++ +    L  G+SGG+++R+ I + + + P  LL+DEP S LD     ++   +
Sbjct: 136 LWQEVKDKLNKSAL--GLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELI 193

Query: 281 RGLARGGRTVITTIH--QPSSRL 301
             L R   T+    H  Q ++R+
Sbjct: 194 HSL-RSELTIAIVTHNMQQATRV 215

Length = 259

>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional

 Score = 65.9 bits (161), Expect = 5e-12
 Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 15/165 (9%)

Query: 109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS- 167
                 +LN +S  ++ GE   + GPSG GK+TLL  +A  +    SG + + G   S+ 
Sbjct: 16  LAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPT-SGTLLFEGEDISTL 74

Query: 168 ---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
                +++  +  Q   L+   TV + L +   +R       +  I   ++    L  T 
Sbjct: 75  KPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIR---NQQPDPAIFLDDLERFALPDTI 130

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
              ++        +SGGE++R+S+ + +   P  LLLDE TS LD
Sbjct: 131 LTKNI------AELSGGEKQRISLIRNLQFMPKVLLLDEITSALD 169

Length = 225

>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 65.8 bits (160), Expect = 8e-12
 Identities = 53/192 (27%), Positives = 91/192 (47%), Gaps = 22/192 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFSSS-- 168
           LN ++  +    + A++GPSG GK+T L  L  R+       K  G + Y G+   S+  
Sbjct: 23  LNNINIKILKNSITALIGPSGCGKSTFLRTL-NRMNDLVEGIKIEGNVIYEGKNIYSNNF 81

Query: 169 ----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
               L+RK G V Q    +  +++ + +SY      PK    ++K +  E+V   L  + 
Sbjct: 82  DILELRRKIGMVFQTPNPF-LMSIYDNISYG-----PKIHGTKDKKKLDEIVEQSLKKSA 135

Query: 225 CRNSVVGGPLFR---GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
             N V    L      +SGG+++R+ I + + + P+ +L+DEPTS LD  +  +I   + 
Sbjct: 136 LWNEV-KDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELII 194

Query: 282 GLARGGRTVITT 293
            L      +I T
Sbjct: 195 NLKESYTIIIVT 206

Length = 254

>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 53/190 (27%), Positives = 88/190 (46%), Gaps = 18/190 (9%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-----GKFSGKITYNGRQFSSS-- 168
           L G+S  ++   ++A +GPSG GK+T L  L  R+       +  G+I  +GR       
Sbjct: 19  LKGISMEIEEKSVVAFIGPSGCGKSTFLR-LFNRMNDLIPATRLEGEIRIDGRNIYDKGV 77

Query: 169 ----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLT 223
               L++  G V Q    +P  ++ E ++Y   LR+   +     I Q  E  +    L 
Sbjct: 78  QVDELRKNVGMVFQRPNPFPK-SIFENVAYG--LRV-NGVKDNAFIRQRVEETLKGAALW 133

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                 +    F  +SGG+++R+ I + M V+PS LL+DEP S LD  +  ++   +  L
Sbjct: 134 DEVKDKLKESAF-ALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192

Query: 284 ARGGRTVITT 293
            +    VI T
Sbjct: 193 KKDYTIVIVT 202

Length = 250

>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.8 bits (160), Expect = 1e-11
 Identities = 57/220 (25%), Positives = 103/220 (46%), Gaps = 21/220 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS------ 168
           VL G++       +  ++G +G GK+TL   L+G LR +  G + + G+    S      
Sbjct: 16  VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQ-KGAVLWQGKPLDYSKRGLLA 74

Query: 169 LKRKTGFVTQD---DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
           L+++   V QD    + Y  +      S   L     ++TR  ++++A  ++        
Sbjct: 75  LRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITR--RVDEALTLVDAQHFRH- 131

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
                  P+ + +S G++KRV+I   +++    LLLDEPT+GLD     +++A +R +  
Sbjct: 132 ------QPI-QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA 184

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            G  VI + H     +Y + D V VL +G  +  G   +V
Sbjct: 185 QGNHVIISSHD-IDLIYEISDAVYVLRQGQILTHGAPGEV 223

Length = 271

>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein

 Score = 66.7 bits (163), Expect = 1e-11
 Identities = 54/204 (26%), Positives = 93/204 (45%), Gaps = 22/204 (10%)

Query: 105 EPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL-------AGRLRGKFSGK 157
           E   +T  V  ++  S  ++ GE+  ++G SGSGK+TLL A+        G +  K    
Sbjct: 29  EILDRTGLVLGVHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDG 88

Query: 158 ITYNGRQFSSSLKR----KTGFVTQDDVLYPHLTVLETLSYAALLR-LPKKLTREEKIEQ 212
                   +++L+R    +   V Q   L P  TV E +++   ++ +PK   R+   EQ
Sbjct: 89  SVDVANCDAATLRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQ 148

Query: 213 AEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272
            E+V    GL +  +   G      +SGG ++RV + +        LL+DEP S LD   
Sbjct: 149 LELV----GLAQWADRKPG-----ELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLI 199

Query: 273 AQRIVATLRGL-ARGGRTVITTIH 295
             ++   L  L ++  +T++   H
Sbjct: 200 RTQLQDELLELQSKLKKTIVFVSH 223

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382

>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 47/163 (28%), Positives = 75/163 (46%), Gaps = 26/163 (15%)

Query: 130 AMLGPSGSGKTTLLTALAGRLR-----GKFSGKITYNGRQFSSS------LKRKTGFVTQ 178
           A++GPSG GK+T L  L  R+       +  G+I  +G            L+R+ G V Q
Sbjct: 36  ALIGPSGCGKSTFLRCL-NRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQ 94

Query: 179 DDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-----TRCRNSVVGGP 233
               +P  ++ E ++Y   LR+     +    E+ E  +    L      R   S +G  
Sbjct: 95  KPNPFPK-SIFENVAYG--LRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALG-- 149

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
               +SGG+++R+ I + + V P  LL+DEP S LD    Q+I
Sbjct: 150 ----LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKI 188

Length = 253

>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional

 Score = 65.5 bits (160), Expect = 1e-11
 Identities = 61/211 (28%), Positives = 95/211 (45%), Gaps = 20/211 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------- 167
           VLN VS  +K GE +A+LG SG GK+TL   L G L     G +++ G   +        
Sbjct: 27  VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVG-LESPSQGNVSWRGEPLAKLNRAQRK 85

Query: 168 SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
           + +R    V QD +  + P  TV E +     LR    L + E++ +A  ++  + L   
Sbjct: 86  AFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDLDDS 143

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-A 284
                   L    SGG+ +RV + + + V P  L+LDE  S LD      ++  L+ L  
Sbjct: 144 VLDKRPPQL----SGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQ 199

Query: 285 RGGRTVITTIHQPSSRLYRMF-DKVVVLSEG 314
           + G   +   H    RL   F  +V+V+  G
Sbjct: 200 QFGTACLFITH--DLRLVERFCQRVMVMDNG 228

Length = 268

>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.6 bits (160), Expect = 1e-11
 Identities = 62/249 (24%), Positives = 125/249 (50%), Gaps = 37/249 (14%)

Query: 78  VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGS 137
           +T++F++V+Y+      KG+ +                ++ V+   + G+  A++G +GS
Sbjct: 1   MTIRFDNVSYTYQ----KGTPYEHQ------------AIHDVNTEFEQGKYYAIVGQTGS 44

Query: 138 GKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK--------RKTGFVTQDDVLYPHLTVL 189
           GK+TL+  +   L+   +G +T +    +   K        ++ G V Q    +P   + 
Sbjct: 45  GKSTLIQNINALLKPT-TGTVTVDDITITHKTKDKYIRPVRKRIGMVFQ----FPESQLF 99

Query: 190 ETLSYAALLRLPK--KLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVS 247
           E      ++  PK  K+  +E    A  ++M+LG +R    V+    F+ +SGG+ ++++
Sbjct: 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSR---DVMSQSPFQ-MSGGQMRKIA 155

Query: 248 IGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFD 306
           I   + +NP  ++LDEPT+GLD  + ++++  L+ L     +T+I   H   + + R  D
Sbjct: 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD-MNEVARYAD 214

Query: 307 KVVVLSEGS 315
           +V+V+ EGS
Sbjct: 215 EVIVMKEGS 223

Length = 286

>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 65.1 bits (159), Expect = 1e-11
 Identities = 60/208 (28%), Positives = 104/208 (50%), Gaps = 23/208 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----LKR 171
           LN VS  VK GE L+++G +GSGK+T +  + G L  + SG+I  +G   +      ++ 
Sbjct: 23  LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAE-SGQIIIDGDLLTEENVWDIRH 81

Query: 172 KTGFVTQD-DVLYPHLTVLETLSYAALLR-LPKKLTREEKIEQAEMVIMELGLTR--CRN 227
           K G V Q+ D  +   TV + +++    + +P +  +E   E  E+V M+    R   R 
Sbjct: 82  KIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPAR- 140

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARG 286
                     +SGG+++RV+I   + + P  ++LDE TS LD      ++ T++G+    
Sbjct: 141 ----------LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY 190

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
             TVI+  H        + D+V+V+  G
Sbjct: 191 QMTVISITHDLDE--VALSDRVLVMKNG 216

Length = 279

>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 61/208 (29%), Positives = 93/208 (44%), Gaps = 20/208 (9%)

Query: 118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF---SGKITYNGRQFSSS--LKRK 172
            ++  +K GE+LA++G SGSGK+    A+ G L       SG+I  +GR         R 
Sbjct: 4   DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRH 63

Query: 173 TGFVTQD--DVLYPHLTV----LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
              + Q+      P  T+    +ETL     L    K  R   +E  E V +        
Sbjct: 64  IATIMQNPRTAFNPLFTMGNHAIETLR---SLGKLSKQARALILEALEAVGLPDPEE--- 117

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
             V+    F+ +SGG  +RV I   +L+ P  L+ DEPT+ LD     R++  LR L + 
Sbjct: 118 --VLKKYPFQ-LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQL 174

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEG 314
             T I  I      + R+ D+V V+ +G
Sbjct: 175 FGTGILLITHDLGVVARIADEVAVMDDG 202

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230

>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 64.2 bits (156), Expect = 3e-11
 Identities = 56/226 (24%), Positives = 102/226 (45%), Gaps = 28/226 (12%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-----GKFSGKITYNGRQFSS--- 167
           +N +S  ++   + A++GPSG GK+T L ++  R+       +  G+I Y G        
Sbjct: 37  VNDISMDIEKHAVTALIGPSGCGKSTFLRSI-NRMNDLIPSARSEGEILYEGLNILDSNI 95

Query: 168 ---SLKRKTGFVTQDDVLYP---HLTVLETLSYAALLRLPKKLTREEKIEQA--EMVIME 219
              +L+R+ G V Q    +P   +  +   L YA   R   K   +E +E++  +  + +
Sbjct: 96  NVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERR---KSVLDEIVEESLTKAALWD 152

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
               R  +S +       +SGG+++R+ I + + + P+ LLLDEP S LD  +  +I   
Sbjct: 153 EVKDRLHSSALS------LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEEL 206

Query: 280 LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           +  L      +I T H     L R+ D+      G  +   +  Q+
Sbjct: 207 ITELKEEYSIIIVT-HNMQQAL-RVSDRTAFFLNGDLVEYDQTEQI 250

Length = 268

>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.7 bits (158), Expect = 3e-11
 Identities = 61/247 (24%), Positives = 102/247 (41%), Gaps = 45/247 (18%)

Query: 107 NKQTRTV-SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           NK+  T    L+ VS  +  GE +A++G +GSGKTT +  L   L    +G I +     
Sbjct: 13  NKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPD-TGTIEWI--FK 69

Query: 166 SSSLKRKTGF---VTQDDVLYPHLTVLETLSYAALLRLPKKLTR--------------EE 208
               K+KT     V +  V+          +    ++  K++ R              E+
Sbjct: 70  DEKNKKKTKEKEKVLEKLVIQK--------TRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121

Query: 209 KIEQAEM-------VIMELGLTRCRN--SVVGGP---LFR---GISGGERKRVSIGQEML 253
            IE+  +       V  E    R      +VG     L R    +SGG+++RV++   + 
Sbjct: 122 TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181

Query: 254 VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE 313
           + P  L+ DEPT+GLD    + I+     L + G+T+I   H   + L     + +   +
Sbjct: 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT-KRTIFFKD 240

Query: 314 GSPIYSG 320
           G  I  G
Sbjct: 241 GKIIKDG 247

Length = 305

>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional

 Score = 63.3 bits (154), Expect = 3e-11
 Identities = 55/177 (31%), Positives = 94/177 (53%), Gaps = 22/177 (12%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK-RKTGFVTQDDV 181
           V  GE L + G +G+GKTTLL  LAG L  + SG+I  +G+  +   + R   ++     
Sbjct: 34  VDAGEALLVQGDNGAGKTTLLRVLAGLLHVE-SGQIQIDGKTATRGDRSRFMAYLGHLPG 92

Query: 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGG 241
           L   L+ LE L +   L       R +++  + + I  +GL    +++V     R +S G
Sbjct: 93  LKADLSTLENLHFLCGLH----GRRAKQMPGSALAI--VGLAGYEDTLV-----RQLSAG 141

Query: 242 ERKRVSIGQEMLVNPSCL-LLDEPTSGLDS---TTAQRIVAT-LRGLARGGRTVITT 293
           ++KR+++ + + ++P+ L LLDEP + LD    T   R+++  LRG   GG  ++TT
Sbjct: 142 QKKRLALAR-LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRG---GGAALVTT 194

Length = 214

>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2

 Score = 65.6 bits (160), Expect = 4e-11
 Identities = 61/258 (23%), Positives = 104/258 (40%), Gaps = 51/258 (19%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK-FSGKITYN---------- 161
             VL  +S  ++ GE+L +LG SG+GK+ L+  L G  + +  SG+I Y+          
Sbjct: 13  KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYV 72

Query: 162 ------GRQ---------------------FSSSLKRKTGFVTQDD-VLYPHLTVLETLS 193
                 G                           ++++   + Q    LY   TVL+ + 
Sbjct: 73  ERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVL 132

Query: 194 YA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEM 252
            A   +    K      ++  EMV +   +T          + R +SGGE++RV + +++
Sbjct: 133 EALEEIGYEGKEAVGRAVDLIEMVQLSHRITH---------IARDLSGGEKQRVVLARQL 183

Query: 253 LVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL 311
              P   L DEPT  LD  TA+ +   L    +  G +++ T H P   +  + DK + L
Sbjct: 184 AKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEV-IEDLSDKAIWL 242

Query: 312 SEGSPIYSGRAAQVMDYF 329
             G     G   +V+  F
Sbjct: 243 ENGEIKEEGTPDEVVAVF 260

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520

>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional

 Score = 65.7 bits (161), Expect = 4e-11
 Identities = 57/219 (26%), Positives = 104/219 (47%), Gaps = 25/219 (11%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS---- 166
             +  ++ VS  ++ GE+L + G  G+G+T L+  L G   G++ G+I  +G+       
Sbjct: 273 PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP 332

Query: 167 -SSLKRKTGFVTQD---DVLYPHLTVLETLSYAALLRLPKKLTREEKI-EQAEMVIMELG 221
             ++ +    V +D   D + P + V + ++ AAL     + T   +I + AE+  +   
Sbjct: 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAAL----DRFTGGSRIDDAAELKTILES 388

Query: 222 LTRCRNSVVGGPLFRGI---SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
           + R +  V        I   SGG +++  + + +L+NP  L+LDEPT G+D      I  
Sbjct: 389 IQRLK--VKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYK 446

Query: 279 TLRGLARGGRTVITTIHQPSSRLYR---MFDKVVVLSEG 314
            +  L + G  +I      SS L     + D+V+V+ EG
Sbjct: 447 LINQLVQQGVAIIVI----SSELPEVLGLSDRVLVMHEG 481

Length = 506

>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 64.0 bits (155), Expect = 4e-11
 Identities = 56/211 (26%), Positives = 108/211 (51%), Gaps = 17/211 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----S 168
           V+ LNGVS  +  GE ++++G +GSGK+T    + G L  +F GK+  +G   ++    +
Sbjct: 20  VNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDG-LFEEFEGKVKIDGELLTAENVWN 78

Query: 169 LKRKTGFVTQD-DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
           L+RK G V Q+ D  +   TV + +++       + + REE I++ +  ++ + +   + 
Sbjct: 79  LRRKIGMVFQNPDNQFVGATVEDDVAFGME---NQGIPREEMIKRVDEALLAVNMLDFKT 135

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RG 286
                     +SGG+++RV++   + + P  ++LDE TS LD T  Q I+  +  +  + 
Sbjct: 136 REPAR-----LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKY 190

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPI 317
             TV++  H          D+++V+  G  I
Sbjct: 191 QLTVLSITHDLDEAASS--DRILVMKAGEII 219

Length = 277

>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional

 Score = 63.5 bits (155), Expect = 5e-11
 Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 24/162 (14%)

Query: 130 AMLGPSGSGKTTLLT------ALAGRLRGKFSGKITYNGRQFSSS------LKRKTGFVT 177
           A +GPSG GK+TLL        L    R +  G+I  +G    +       L+ K G V 
Sbjct: 43  AFIGPSGCGKSTLLRTFNRMYELYPEQRAE--GEILLDGENILTPKQDIALLRAKVGMVF 100

Query: 178 QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL---TRCRNSVVGGPL 234
           Q    +P +++ + +++   +RL +KL+R E  E+ E  + +  L    + +    G   
Sbjct: 101 QKPTPFP-MSIYDNIAFG--VRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSG--- 154

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
              +SGG+++R+ I + + + P  LLLDEP S LD  +  RI
Sbjct: 155 -YSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRI 195

Length = 260

>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

 Score = 65.4 bits (160), Expect = 5e-11
 Identities = 52/186 (27%), Positives = 82/186 (44%), Gaps = 36/186 (19%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGF--VTQDD 180
           V+PGE L + G SG+GKT+LL ALAG L    SG+I+         L ++      T  +
Sbjct: 416 VRPGERLLITGESGAGKTSLLRALAG-LWPWGSGRISMPADSALLFLPQRPYLPQGTLRE 474

Query: 181 VL--------YPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
            L        +    ++  L    L  L ++L  E++ ++       L            
Sbjct: 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDR------VL------------ 516

Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
                 SGGE++R++  + +L  P  + LDE TS LD  T  R+   L+       TVI+
Sbjct: 517 ------SGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDA-TVIS 569

Query: 293 TIHQPS 298
             H+P+
Sbjct: 570 VGHRPT 575

Length = 604

>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.1 bits (153), Expect = 7e-11
 Identities = 52/196 (26%), Positives = 97/196 (49%), Gaps = 17/196 (8%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAG--------RLRGK--FSGKITYN 161
           T  +L GVS  +   ++ A++GPSG GK+T L  L          R+ G+  F  +  Y 
Sbjct: 19  TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYE 78

Query: 162 GRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAA-LLRLPKKLTREEKIEQAEMVIMEL 220
            R   + L+R+   V     L+P ++V + ++Y   ++    KL  ++ +E A +   +L
Sbjct: 79  RRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESA-LKDADL 136

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
                ++ +    L   +SGG+++R+ I + + V P  LL+DEP  GLD   + ++ + +
Sbjct: 137 -WDEIKHKIHKSAL--DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLI 193

Query: 281 RGLA-RGGRTVITTIH 295
           + L  R   T++   H
Sbjct: 194 QSLRLRSELTMVIVSH 209

Length = 261

>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.7 bits (152), Expect = 7e-11
 Identities = 51/199 (25%), Positives = 97/199 (48%), Gaps = 19/199 (9%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFSS--- 167
           LN ++  +   ++ A++GPSG GK+T L  L  R+       K  G++  +G+       
Sbjct: 20  LNDINLPIYENKITALIGPSGCGKSTFLRCL-NRMNDLISNVKIEGEVLLDGKNIYDKDV 78

Query: 168 ---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-T 223
               L+++ G V Q    +P +++ + ++Y   +   K     +KI   E  + +  L  
Sbjct: 79  DVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKI--VEWALKKAALWD 135

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
             ++ +    L   +SGG+++R+ I + + V P  +L+DEPTS LD  +  +I   +  L
Sbjct: 136 EVKDDLKKSAL--KLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193

Query: 284 ARGGRTVITTIH-QPSSRL 301
            +    VI T + Q +SR+
Sbjct: 194 KKEYTIVIVTHNMQQASRV 212

Length = 251

>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.8 bits (153), Expect = 8e-11
 Identities = 59/221 (26%), Positives = 104/221 (47%), Gaps = 22/221 (9%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-------- 167
           L  V+  ++ G   A +G +GSGK+T++  L G L     G +  +    +S        
Sbjct: 23  LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNG-LHVPTQGSVRVDDTLITSTSKNKDIK 81

Query: 168 SLKRKTGFVTQ--DDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME-LGLTR 224
            +++K G V Q  +  L+   TVL+ +++      P+     +  E+AE +  E L L  
Sbjct: 82  QIRKKVGLVFQFPESQLFEE-TVLKDVAFG-----PQNFGVSQ--EEAEALAREKLALVG 133

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
              S+     F  +SGG+ +RV+I   + + P  L+LDEPT+GLD    + ++   + L 
Sbjct: 134 ISESLFEKNPFE-LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLH 192

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           + G T++   H     +    D V VL +G  + SG+   +
Sbjct: 193 QSGMTIVLVTHLMDD-VANYADFVYVLEKGKLVLSGKPKDI 232

Length = 280

>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 56/204 (27%), Positives = 94/204 (46%), Gaps = 34/204 (16%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALA---GRLRG-KFSGKITYNGRQFSS---- 167
           L GVS  +    + A++GPSG GK+T L  L     R++  +  G +  +G+        
Sbjct: 61  LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120

Query: 168 --SLKRKTGFVTQDDVLYPHLTVLETLSYAA----------LLRLPKKLTREEKIEQAEM 215
              L+++ G V Q    +P  ++ E +SY            L RL   L R++K  + E+
Sbjct: 121 LVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARL---LGRDDKDAEDEL 176

Query: 216 VIMELGLTRC------RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
           V  E  L +        + +    L  G+SGG+++R+ I + + V+P  +L+DEP S LD
Sbjct: 177 V--ERSLRQAALWDEVNDRLDDNAL--GLSGGQQQRLCIARCLAVDPEVILMDEPASALD 232

Query: 270 STTAQRIVATLRGLARGGRTVITT 293
                +I   +  LA     V+ T
Sbjct: 233 PIATSKIEDLIEELAEEYTVVVVT 256

Length = 305

>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D

 Score = 60.2 bits (147), Expect = 1e-10
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 52/191 (27%)

Query: 122 MVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDV 181
            +KPG+ L + GPSG+GK++L  ALAG L    SG+I                F+ Q   
Sbjct: 23  EIKPGDRLLITGPSGTGKSSLFRALAG-LWPWGSGRIGMPEG-------EDLLFLPQRPY 74

Query: 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGG 241
           L P  T+ E L Y                                      P    +SGG
Sbjct: 75  L-PLGTLREQLIY--------------------------------------PWDDVLSGG 95

Query: 242 ERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL 301
           E++R++  + +L  P  + LDE TS LD  +  R+   L+ L   G TVI+  H+PS  L
Sbjct: 96  EQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS--L 150

Query: 302 YRMFDKVVVLS 312
           ++  D+V+ L 
Sbjct: 151 WKFHDRVLDLD 161

Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166

>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 62.7 bits (153), Expect = 1e-10
 Identities = 59/223 (26%), Positives = 105/223 (47%), Gaps = 31/223 (13%)

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--------LK 170
           V+  +  G  +A++G +GSGK+TLL  L G L+   SG +T   R  ++         L+
Sbjct: 26  VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPT-SGTVTIGERVITAGKKNKKLKPLR 84

Query: 171 RKTGFVTQDDVLYPHL-----TVLETLSYAALLRLPKK--LTREEKIEQAEMVIMELGLT 223
           +K G V Q    +P       TV + + +      P    ++ E+  ++A  +I  +GL 
Sbjct: 85  KKVGIVFQ----FPEHQLFEETVEKDICFG-----PMNFGVSEEDAKQKAREMIELVGLP 135

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                ++    F  +SGG+ +RV+I   + + P  L+LDEPT+GLD    + ++     L
Sbjct: 136 E---ELLARSPFE-LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKL 191

Query: 284 AR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            +  G T +   H       R  D++VV+ +G+    G   ++
Sbjct: 192 HKEKGLTTVLVTHSMED-AARYADQIVVMHKGTVFLQGTPREI 233

Length = 290

>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 41/239 (17%)

Query: 101 TSHGEPNKQTRTVSV-------LNGVSGMVKPGELLAMLGPSGSGKTTLLTAL------- 146
            S GE   + R ++V       L+ VS  +   ++ AM+GPSG GK+T L  +       
Sbjct: 33  ASSGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLI 92

Query: 147 -AGRLRGK--FSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK 203
            A R+ G+  F GK  Y+      +L+R+ G V Q    +P  ++ + ++Y   L++   
Sbjct: 93  DAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYG--LKIQG- 148

Query: 204 LTREEKIEQAEMVIMELGLTRC------RNSVVGGPLFRGISGGERKRVSIGQEMLVNPS 257
              +  I++     +E  L R       ++ +    L   +SGG+++R+ I + +  +P 
Sbjct: 149 --YDGDIDE----RVEESLRRAALWDEVKDQLDSSGL--DLSGGQQQRLCIARAIAPDPE 200

Query: 258 CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT--IHQPSSRLYRMFDKVVVLSEG 314
            +L+DEP S LD     +I   +  LA     VI T  + Q +    R+ DK  V   G
Sbjct: 201 VILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAA----RISDKTAVFLTG 255

Length = 285

>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 55/201 (27%), Positives = 94/201 (46%), Gaps = 25/201 (12%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFSSS-- 168
           L  ++  +    + A++GPSG GK+TLL     R+       + +G I YNG     S  
Sbjct: 22  LYDITISIPKNRVTALIGPSGCGKSTLLRCF-NRMNDLIPGCRITGDILYNGENIMDSGA 80

Query: 169 ----LKRKTGFVTQDDVLYPHLTVLETLSYAALLR-LPKKLTREEKIEQA--EMVIMELG 221
               L+RK G V Q    +P  ++ E ++Y   +     K T +  +E++     + +  
Sbjct: 81  DVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEV 139

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
             R  +S +       +SGG+++R+ I + + VNP  +L+DEP S LD     +I   + 
Sbjct: 140 KDRLHDSALS------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIE 193

Query: 282 GLARGGRTVITTIH--QPSSR 300
            L +   TVI   H  Q ++R
Sbjct: 194 DLKK-EYTVIIVTHNMQQAAR 213

Length = 253

>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 61.6 bits (149), Expect = 2e-10
 Identities = 45/179 (25%), Positives = 85/179 (47%), Gaps = 23/179 (12%)

Query: 130 AMLGPSGSGKTTLLTAL--------AGRLRGK--FSGKITYNGRQFSSSLKRKTGFVTQD 179
           A++GPSG GK+T+L ++        + R+ GK        Y+      S++R+ G V Q 
Sbjct: 34  AIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93

Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-----TRCRNSVVGGPL 234
              +P +++ + +   A  +L  ++ R E  E  E  +  + L      R +++ +    
Sbjct: 94  PNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAME--- 148

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
              +SGG+++R+ I + + V P  +L+DEP S LD  +  +I   +  L      +I T
Sbjct: 149 ---LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204

Length = 252

>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C

 Score = 61.8 bits (150), Expect = 2e-10
 Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 49/222 (22%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-----QFS--- 166
           VL  ++  ++ GE+LA+ G +GSGKT+LL  + G L     GKI ++GR     QFS   
Sbjct: 52  VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPS-EGKIKHSGRISFSSQFSWIM 110

Query: 167 -SSLKRKTGF-VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI----EQAEMVIMEL 220
             ++K    F V+ D+  Y + +V+            K    EE I    E+   V+ E 
Sbjct: 111 PGTIKENIIFGVSYDE--YRYKSVV------------KACQLEEDITKFPEKDNTVLGEG 156

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT- 279
           G+T              +SGG+R R+S+ + +  +    LLD P   LD  T + I  + 
Sbjct: 157 GIT--------------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESC 202

Query: 280 -LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
             + +A   R ++T+         +  DK+++L EGS  + G
Sbjct: 203 VCKLMANKTRILVTS----KMEHLKKADKILILHEGSSYFYG 240

The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 63.0 bits (154), Expect = 3e-10
 Identities = 58/213 (27%), Positives = 105/213 (49%), Gaps = 24/213 (11%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--QFSS--- 167
           V  L+ +S   + G++ A++G +G+GK+TLL  L+G  +   +G I  +G+  +F+S   
Sbjct: 17  VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPD-AGSILIDGQEMRFASTTA 75

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK---LTREEKIEQAEMVIMELGLTR 224
           +L      + Q+  L P +TV E L    L +LP K   + R     +A   +  LG+  
Sbjct: 76  ALAAGVAIIYQELHLVPEMTVAENL---YLGQLPHKGGIVNRRLLNYEAREQLEHLGVDI 132

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             ++    PL + +S G+R+ V I + +  N   +  DEPTS L +   +++   +R L 
Sbjct: 133 DPDT----PL-KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELR 187

Query: 285 RGGRTVITTIHQPSSRL---YRMFDKVVVLSEG 314
             GR ++   H    R+   + + D + V  +G
Sbjct: 188 AEGRVILYVSH----RMEEIFALCDAITVFKDG 216

Length = 501

>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 49/190 (25%), Positives = 85/190 (44%), Gaps = 19/190 (10%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAG--------RLRGKFS--GKITYNGRQF 165
           L  VS  +    + A++GPSG GK+T +  L          R+ GK S  G+  Y     
Sbjct: 28  LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87

Query: 166 SSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA--EMVIMELGLT 223
              L++  G V Q    +P +++ + ++Y   +    K   +  +E A     + +    
Sbjct: 88  VVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSD 146

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
           R ++  +       +SGG+++R+ I + + V P  +L DEPTS LD  +  RI   +  L
Sbjct: 147 RLKSPALS------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL 200

Query: 284 ARGGRTVITT 293
            +    VI T
Sbjct: 201 KKDYTIVIVT 210

Length = 258

>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed

 Score = 60.1 bits (146), Expect = 5e-10
 Identities = 55/156 (35%), Positives = 83/156 (53%), Gaps = 23/156 (14%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           VL+ VS  +KPG++L +LGP+G+GK+TL+  + G L     G I  NG       K + G
Sbjct: 19  VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLG-LVAPDEGVIKRNG-------KLRIG 70

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS-VVGGP 233
           +V Q   L   L     L+    LRL +  T++E I  A        L R +   ++  P
Sbjct: 71  YVPQKLYLDTTL----PLTVNRFLRL-RPGTKKEDILPA--------LKRVQAGHLIDAP 117

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
           + + +SGGE +RV + + +L  P  L+LDEPT G+D
Sbjct: 118 M-QKLSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152

Length = 251

>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional

 Score = 61.0 bits (149), Expect = 6e-10
 Identities = 65/231 (28%), Positives = 112/231 (48%), Gaps = 32/231 (13%)

Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFS 166
            RT+  LN VS  +  GE+  ++G SG+GK+TL+      L    SG++  +G+     S
Sbjct: 15  GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIR-CINLLERPTSGRVLVDGQDLTALS 73

Query: 167 SS----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL--TREEKIEQA-----EM 215
                  +R+ G + Q      H  +L + +    + LP +L  T + +I+       E+
Sbjct: 74  EKELRKARRQIGMIFQ------HFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLEL 127

Query: 216 VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR 275
           V    GL+   +     P    +SGG+++RV+I + +  NP  LL DE TS LD  T + 
Sbjct: 128 V----GLSDKADRY---P--AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178

Query: 276 IVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           I+  L+ + R  G T++   H+    + R+ D+V V+  G  +  G  ++V
Sbjct: 179 ILELLKDINRELGLTIVLITHE-MDVVKRICDRVAVIDAGRLVEQGTVSEV 228

Length = 343

>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional

 Score = 61.8 bits (150), Expect = 8e-10
 Identities = 59/239 (24%), Positives = 117/239 (48%), Gaps = 27/239 (11%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALA-GRLRGKFSGKITYN----- 161
           ++ + ++ +  +S  ++ GE LA++G SGSGK+  +TALA  RL  +  G +  +     
Sbjct: 24  QEQQKIAAVRNLSFSLQRGETLAIVGESGSGKS--VTALALMRLLEQAGGLVQCDKMLLR 81

Query: 162 ---------GRQFSSSLKRKTG----FVTQDDV--LYPHLTVLETLSYAALLRLPKKLTR 206
                      Q ++ ++   G     + Q+ +  L P  TV E +  A  +RL +  +R
Sbjct: 82  RRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQI--AESIRLHQGASR 139

Query: 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
           EE + +A+ ++ ++ +   +  +   P    +SGG R+RV I   +   P+ L+ DEPT+
Sbjct: 140 EEAMVEAKRMLDQVRIPEAQTILSRYP--HQLSGGMRQRVMIAMALSCRPAVLIADEPTT 197

Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            LD T   +I+  ++ L +     +  I      +  + D+V+V+ +G  + +G   Q+
Sbjct: 198 ALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQI 256

Length = 623

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 62.2 bits (151), Expect = 8e-10
 Identities = 58/213 (27%), Positives = 104/213 (48%), Gaps = 31/213 (14%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-QFSSSLKRKT 173
           VL  +S  ++ G+LLA+ G +GSGK++LL  + G L     GKI ++GR  FS       
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPS-EGKIKHSGRISFSPQTSWIM 499

Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI----EQAEMVIMELGLTRCRNSV 229
               +D++++  L+  E   Y +++   K    EE I    E+ + V+ E G+T      
Sbjct: 500 PGTIKDNIIF-GLSYDE-YRYTSVI---KACQLEEDIALFPEKDKTVLGEGGIT------ 548

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARGG 287
                   +SGG+R R+S+ + +  +    LLD P + LD  T + I  +   + ++   
Sbjct: 549 --------LSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKT 600

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           R ++T+  +   +     DK+++L EG   + G
Sbjct: 601 RILVTSKLEHLKKA----DKILLLHEGVCYFYG 629

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR

 Score = 59.9 bits (145), Expect = 8e-10
 Identities = 65/212 (30%), Positives = 102/212 (48%), Gaps = 29/212 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           VL  V   +KPG+ + + G +GSGK++L  A   R+   F GKI  +G   S     +L+
Sbjct: 36  VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFF-RMVDIFDGKIVIDGIDISKLPLHTLR 94

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTRE---EKIEQAEMVIMELGLTRCRN 227
            +   + QD +L+       + S    L    K T +   E +E A++  M   L    +
Sbjct: 95  SRLSIILQDPILF-------SGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLD 147

Query: 228 SVV--GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA---QRIVATLRG 282
           +VV  GG  F   S G+R+   + +  +   S L++DE T+ +D  T    Q++V T   
Sbjct: 148 AVVTEGGENF---SVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT--- 201

Query: 283 LARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
            A   RTV+T  H+ S+ L    D V+VLS G
Sbjct: 202 -AFADRTVVTIAHRVSTILDA--DLVLVLSRG 230

The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257

>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional

 Score = 61.4 bits (150), Expect = 9e-10
 Identities = 47/171 (27%), Positives = 75/171 (43%), Gaps = 50/171 (29%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           +   ++ +++ GE LA++G +G GKTTLL  L G L    SG + +       S     G
Sbjct: 334 LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPD-SGTVKW-------SENANIG 385

Query: 175 FVTQDDVLYPH-------LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
           +  QD     H       LT+ + +S         +  +E   EQA          R   
Sbjct: 386 YYAQD-----HAYDFENDLTLFDWMS---------QWRQEGDDEQA---------VR--- 419

Query: 228 SVVGGPLFRG---------ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
             +G  LF           +SGGE+ R+  G+ M+  P+ L++DEPT+ +D
Sbjct: 420 GTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470

Length = 530

>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 35/165 (21%)

Query: 121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLR------GKFSGKITYNGRQFSSSLKRKTG 174
           G +   E++ +LGP+G GKTT +  LAG L+            ++Y  +   +  +    
Sbjct: 20  GSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYE---- 75

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
             T  D+L        T  Y        ++ +  +IEQ    I++  +            
Sbjct: 76  -GTVRDLLSSITKDFYTHPY-----FKTEIAKPLQIEQ----ILDREVPE---------- 115

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
              +SGGE +RV+I   +  +    LLDEP++ LD    QR++A+
Sbjct: 116 ---LSGGELQRVAIAACLSKDADIYLLDEPSAYLDV--EQRLMAS 155

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 60.7 bits (148), Expect = 1e-09
 Identities = 63/224 (28%), Positives = 102/224 (45%), Gaps = 57/224 (25%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           P K+     +L  +S    PG  + +LG +G+GK+TLL  +AG +  +F+G+        
Sbjct: 16  PKKE-----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKEFNGEAR------ 63

Query: 166 SSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI--------------- 210
             +   K G++ Q+  L P  TV E +    +  +   L R  +I               
Sbjct: 64  -PAPGIKVGYLPQEPQLDPTKTVRENVE-EGVAEIKDALDRFNEISAKFAEPDADMDALL 121

Query: 211 -EQAEM--VI-----------MELGLT--RC--RNSVVGGPLFRGISGGERKRVSIGQEM 252
            EQAE+  +I           +E+ +   RC   ++ V       +SGGER+RV++ + +
Sbjct: 122 AEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTK-----LSGGERRRVALCRLL 176

Query: 253 LVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRTVITTIH 295
           L  P  LLLDEPT+ LD+ +    VA L + L     TV+   H
Sbjct: 177 LSKPDMLLLDEPTNHLDAES----VAWLEQHLQEYPGTVVAVTH 216

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 49/171 (28%), Positives = 76/171 (44%), Gaps = 26/171 (15%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFS--- 166
            L  +S  +    + A +GPSG GK+TLL     R+       +  G+I  +G+      
Sbjct: 40  ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCF-NRMNDLVDNCRIEGEIRLDGQNIYDKK 98

Query: 167 ---SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL- 222
              + L+R+ G V Q    +P  ++ E + Y   LRL     R    E  E  +    L 
Sbjct: 99  VDVAELRRRVGMVFQRPNPFPK-SIYENVVYG--LRLQGINNRRVLDEAVERSLRGAALW 155

Query: 223 ----TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
                R   +        G+SGG+++R+ I + + + P  LLLDEPTS LD
Sbjct: 156 DEVKDRLHENAF------GLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200

Length = 272

>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 61/216 (28%), Positives = 106/216 (49%), Gaps = 18/216 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL--RGKFSGKITYNGRQFSS--- 167
              LN +S  +  G   A++G +GSGK+T+   + G L      + KIT +G   ++   
Sbjct: 20  KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV 79

Query: 168 -SLKRKTGFVTQD-DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
             ++ K G V Q+ D  +   TV + +++    R    + R E I+    V+ ++G+   
Sbjct: 80  WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDY 136

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
            +S    P    +SGG+++RV+I   + V P  ++LDE TS LD    ++I+  +R L +
Sbjct: 137 IDS---EP--ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKK 191

Query: 286 -GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
               TVI+  H        M D+V+VL +G  +  G
Sbjct: 192 KNNLTVISITHDIDEA--NMADQVLVLDDGKLLAQG 225

Length = 282

>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 46/179 (25%), Positives = 88/179 (49%), Gaps = 13/179 (7%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLR---GKFSGKITYNGRQFSS----SLKRKTGF 175
           ++  ++ A++G SG GK+T L     R+     K  G +   G+   +    +L++  G 
Sbjct: 25  IEQNKITALIGASGCGKSTFLRCF-NRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGM 83

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-TRCRNSVVGGPL 234
           V Q   ++   ++ E +SYA  L    K  ++E+       + ++GL    ++ +    L
Sbjct: 84  VFQQPNVFVK-SIYENISYAPKLHGMIK-NKDEEEALVVDCLQKVGLFEEVKDKLKQNAL 141

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
              +SGG+++R+ I + + + P  LLLDEPTS LD  ++  I   L+ L+     ++ T
Sbjct: 142 --ALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVT 198

Length = 246

>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional

 Score = 58.2 bits (141), Expect = 3e-09
 Identities = 49/170 (28%), Positives = 82/170 (48%), Gaps = 21/170 (12%)

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTAL--------AGRLRGK--FSGKITYNGRQFSSS 168
           V+  ++P  + A +GPSG GK+T+L  L          R+ G+    G+  Y       +
Sbjct: 23  VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL---TRC 225
           ++R  G V Q    +P +++ + +   A L+L     +++  E  E  +    L    + 
Sbjct: 83  VRRTIGMVFQRPNPFPTMSIRDNV--VAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKD 140

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD--STTA 273
           R    GG    G+SGG+++R+ I + + V P  LL+DEP S LD  ST A
Sbjct: 141 RLDKPGG----GLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLA 186

Length = 258

>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 25/190 (13%)

Query: 127 ELLAMLGPSGSGKTTLLTALAGRLR-----GKFSGKITYNGRQF------SSSLKRKTGF 175
           +++A +GPSG GK+TLL     R+       K  G++ Y  R        S  L+R+ G 
Sbjct: 47  KIIAFIGPSGCGKSTLLRCF-NRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGM 105

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
           V Q    +P  ++ E +++A     P+    +  ++  E+V   L        V      
Sbjct: 106 VFQRPNPFPK-SIYENIAFA-----PRANGYKGNLD--ELVEDSLRRAAIWEEVKDKLKE 157

Query: 236 RG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
           +G  +SGG+++R+ I + + + P  LL+DEP S LD  +  R V  L    +   T+I  
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPIST-RQVEELCLELKEQYTIIMV 216

Query: 294 IH--QPSSRL 301
            H  Q +SR+
Sbjct: 217 THNMQQASRV 226

Length = 274

>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 58.2 bits (140), Expect = 3e-09
 Identities = 57/213 (26%), Positives = 93/213 (43%), Gaps = 18/213 (8%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS----GKITYNGRQFSSSLK---RKTGF 175
           VK G   A++G +GSGK+TLL  L G L+        G I  +       +K   +K G 
Sbjct: 29  VKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGV 88

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKK--LTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
           V Q    +P   + E      +   P+   + +E+  + A   +  +GL          P
Sbjct: 89  VFQ----FPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLAD--EFWEKSP 142

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
               +SGG+ +RV+I   + + P  L+LDEPT+GLD      ++     + + G+TV+  
Sbjct: 143 F--ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            H     +    D V +L +G  I  G  + V 
Sbjct: 201 THLMDD-VADYADYVYLLEKGHIISCGTPSDVF 232

Length = 288

>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 58/211 (27%), Positives = 96/211 (45%), Gaps = 21/211 (9%)

Query: 126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF----SSSLKRKTGFVTQDDV 181
           G   A++GP+G GK+TLL  L+ RL     G +  +G       S  + R+ G + Q+  
Sbjct: 33  GHFTAIIGPNGCGKSTLLRTLS-RLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNAT 91

Query: 182 LYPHLTVLETLSYAALLRLPKK--LTREEKIEQAEMVIMEL---GLTRCRNSVVGGPLFR 236
               +TV E ++     R P +   TR  K E  E V   +   G+T   +  V      
Sbjct: 92  TPGDITVQELVARG---RYPHQPLFTRWRK-EDEEAVTKAMQATGITHLADQSVDT---- 143

Query: 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIH 295
            +SGG+R+R  I   +    + +LLDEPT+ LD +    ++  L  L R  G T+   +H
Sbjct: 144 -LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202

Query: 296 QPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
              ++  R    ++ L EG  +  G   +++
Sbjct: 203 D-LNQACRYASHLIALREGKIVAQGAPKEIV 232

Length = 265

>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 56/212 (26%), Positives = 98/212 (46%), Gaps = 23/212 (10%)

Query: 127 ELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQF-----SSSLKRKTGFV 176
           ++ A++GPSG GK+TLL  L  R+       K +GK+T +G         + L+ K G V
Sbjct: 30  QVTALIGPSGCGKSTLLRCL-NRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMV 88

Query: 177 TQDDVLYPHLTVLETLSYAALLR---LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
            Q    +P +++ E ++Y   LR   +  K   +E +E++   +    L       +   
Sbjct: 89  FQKPNPFP-MSIYENVAYG--LRAQGIKDKKVLDEVVERS---LRGAALWDEVKDRLKSH 142

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
            F G+SGG+++R+ I + + + P  +L+DEPTS LD     +I   +  L +    VI T
Sbjct: 143 AF-GLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVT 201

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
                +R  R+ D+      G  +       +
Sbjct: 202 HSMQQAR--RISDRTAFFLMGELVEHDDTQVI 231

Length = 249

>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional

 Score = 56.8 bits (137), Expect = 9e-09
 Identities = 44/171 (25%), Positives = 79/171 (46%), Gaps = 28/171 (16%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRG----KFSGKITYNGRQ-FSSS-----LKRK 172
           +   E+ A++GPSG GK+T +  L   +      K +GKI Y  +  F  S     L+  
Sbjct: 47  IHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTN 106

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
            G V Q    +P  ++ + ++Y      PK    ++K       + E+     R + +  
Sbjct: 107 VGMVFQKPNPFPK-SIYDNVTYG-----PKIHGIKDK-----KTLDEIVEKSLRGAAIWD 155

Query: 233 PL-------FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
            L         G+SGG+++R+ I + + + P  +L+DEPTS LD  +  ++
Sbjct: 156 ELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKV 206

Length = 271

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 54.7 bits (133), Expect = 9e-09
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
           +S GER+ V I + +  N   L+LDEPT+ L     +R+   +R L   G  VI   H  
Sbjct: 83  LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH-- 140

Query: 298 SSRL---YRMFDKVVVLSEG 314
             RL   + + D+V VL +G
Sbjct: 141 --RLDEVFEIADRVTVLRDG 158

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional

 Score = 56.7 bits (137), Expect = 1e-08
 Identities = 44/170 (25%), Positives = 80/170 (47%), Gaps = 23/170 (13%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG-------RQFS 166
            + + +S  V  G++ A++GPSG GKTTLL  + G++     G+I ++G       R   
Sbjct: 21  CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPD-HGEILFDGENIPAMSRSRL 79

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLR----LPKKLTREEKIEQAEMVIMELGL 222
            +++++   + Q   L+  + V + ++Y   LR    LP  L           V+M+L  
Sbjct: 80  YTVRKRMSMLFQSGALFTDMNVFDNVAYP--LREHTQLPAPLLH-------STVMMKLEA 130

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272
              R +    P    +SGG  +R ++ + + + P  ++ DEP  G D  T
Sbjct: 131 VGLRGAAKLMP--SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178

Length = 269

>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 52/211 (24%), Positives = 93/211 (44%), Gaps = 20/211 (9%)

Query: 127 ELLAMLGPSGSGKTTLLTAL--------AGRLRGK--FSGKITYNGRQFSSSLKRKTGFV 176
           ++ A++GPSG GK+TLL AL          RL G      +  Y+      +L+++ G V
Sbjct: 31  QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMV 90

Query: 177 TQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR 236
            Q    +P  ++ + +++      P+ L    +    E+V   L      + V       
Sbjct: 91  FQQPNPFPK-SIFDNVAFG-----PRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKS 144

Query: 237 G--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
           G  +SGG+++R+ I + + + P  +L+DEP S LD  +  RI   ++ L +     I T 
Sbjct: 145 GLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTH 204

Query: 295 HQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           +   +   R  D    L  G  +  GR  ++
Sbjct: 205 NMQQAA--RASDWTGFLLTGDLVEYGRTGEI 233

Length = 251

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 58.5 bits (141), Expect = 1e-08
 Identities = 30/82 (36%), Positives = 51/82 (62%), Gaps = 3/82 (3%)

Query: 232  GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTV 290
            GP  + +SGG+++R++I + +L  P  LLLDE TS LDS + + I  T+  +  +  +T+
Sbjct: 1353 GPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI 1412

Query: 291  ITTIHQPSSRLYRMFDKVVVLS 312
            IT  H+ +S   +  DK+VV +
Sbjct: 1413 ITIAHRIAS--IKRSDKIVVFN 1432

Length = 1466

>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 61/229 (26%), Positives = 107/229 (46%), Gaps = 30/229 (13%)

Query: 105 EPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ 164
           E N+++     L+ V+  VK GE L +LG +GSGK+T+   +   L     GK+  +G  
Sbjct: 15  ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS-EGKVYVDGLD 73

Query: 165 FSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
            S       ++ K G V Q+    P   ++ T+    +   P+ L     I   E+    
Sbjct: 74  TSDEENLWDIRNKAGMVFQN----PDNQIVATIVEEDVAFGPENL----GIPPEEI---- 121

Query: 220 LGLTRCRNSV--VGGPLFRG-----ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272
               R   S+  VG   +R      +SGG+++RV+I   + + P C++ DEPT+ LD + 
Sbjct: 122 --RERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG 179

Query: 273 AQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
            + +V T++ L +  G T+I   H     +    D+++V+  G  +  G
Sbjct: 180 RREVVNTIKELNKKYGITIILITHYMEEAVEA--DRIIVMDSGKVVMEG 226

Length = 280

>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 30/189 (15%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLR---GKFSGKITYNGRQFSSSLKRKTGFVTQD 179
            + G++L ++GP+G GK+T L  LAG+L+   GKF     ++       L    G   Q+
Sbjct: 23  PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDE-----ILDEFRGSELQN 77

Query: 180 ---DVLYPHLTVLETLSYAALLRLPKK--------LTREEKIEQAEMVIMELGLTRCRNS 228
               +L   + V+    Y  L+  PK         L ++++  + + ++ +L L    + 
Sbjct: 78  YFTKLLEGDVKVIVKPQYVDLI--PKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDR 135

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA--TLRGLARG 286
            +       +SGGE +RV+I   +  +      DEP+S LD    QR+ A   +R LA  
Sbjct: 136 NI-----DQLSGGELQRVAIAAALARDADFYFFDEPSSYLD--IKQRLNAARLIRELAED 188

Query: 287 GRTVITTIH 295
              V+   H
Sbjct: 189 DNYVLVVEH 197

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255

>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 52/205 (25%), Positives = 94/205 (45%), Gaps = 22/205 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           VL  ++  +KPG+++A++G SG+GKTTLL  + G  +G+  G+  Y        + + T 
Sbjct: 398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGR--GEEKYRPDSGKVEVPKNTV 455

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
                    P            +L   +  T +  +  A  ++   GL+   ++V+    
Sbjct: 456 SALIPGEYEP------EFGEVTILEHLRSKTGD--LNAAVEILNRAGLS---DAVLYRRK 504

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITT 293
           F  +S G+++R  + + +   P+ LL+DE  + LD  TA R+   +  LAR  G T+I  
Sbjct: 505 FSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVV 564

Query: 294 IH--------QPSSRLYRMFDKVVV 310
            H        +P + +   + KV V
Sbjct: 565 THRPEVGNALRPDTLILVGYGKVPV 589

Length = 593

>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 56.3 bits (135), Expect = 2e-08
 Identities = 54/220 (24%), Positives = 96/220 (43%), Gaps = 28/220 (12%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTL---LTALAGRLRGK-------FSGKITY 160
           RT  VL+ ++  +K  ++ A +GPSG GK+T    L  L   + G        F G  T 
Sbjct: 93  RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTR 152

Query: 161 NGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL 220
           + +  S  L+ + G V Q    +  +++ + ++Y             EKI +  +    L
Sbjct: 153 SKKISSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL 211

Query: 221 ------GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
                  L +  N+         +SGG+++R+ I + + + P  LL+DEPTS LD     
Sbjct: 212 WDEVKDDLDKAGNA---------LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATA 262

Query: 275 RIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
           +I   +  L +    +I T     ++  R+ D+ V   +G
Sbjct: 263 KIEELILELKKKYSIIIVT--HSMAQAQRISDETVFFYQG 300

Length = 329

>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP)

 Score = 57.3 bits (138), Expect = 2e-08
 Identities = 61/278 (21%), Positives = 115/278 (41%), Gaps = 45/278 (16%)

Query: 66  IRFSILRESLHPVTLKFEDV----AYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSG 121
           +R  +  E L P +++   +      SI +H +    F  +   P         LNG++ 
Sbjct: 610 LRIFLSHEELEPDSIERRTIKPGEGNSITVHNAT---FTWARDLP-------PTLNGITF 659

Query: 122 MVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVT---- 177
            +  G L+A++G  G GK++LL+AL   +  K  G +   G   S +   +  ++     
Sbjct: 660 SIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVHMKG---SVAYVPQQAWIQNDSL 715

Query: 178 QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-IMELGLTRCRNSVVGGPLFR 236
           ++++L+     L    Y  +L     L   E +   +   I E G+              
Sbjct: 716 RENILFGK--ALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVN------------- 760

Query: 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI---VATLRGLARGGRTVITT 293
            +SGG+++RVS+ + +  N    L D+P S +D+   + I   V    G+ +  +T I  
Sbjct: 761 -LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLK-NKTRILV 818

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS 331
            H  S       D ++V+S G     G   +++   G+
Sbjct: 819 THGIS--YLPQVDVIIVMSGGKISEMGSYQELLQRDGA 854

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 56.9 bits (138), Expect = 2e-08
 Identities = 54/187 (28%), Positives = 90/187 (48%), Gaps = 26/187 (13%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLR---GKFSGKITYNGRQFSSSLKRKTGFVTQD 179
            +PG+++ +LGP+G GK+T L  LAG L+   G++    +++       +KR  G   Q+
Sbjct: 97  PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWD-----EVIKRFRGTELQN 151

Query: 180 ---DVLYPHLTVLETLSYAALL-RLPKKLTRE--EKIEQ---AEMVIMELGLTRCRNSVV 230
               +    L  +    Y  L+ ++ K    E  +K+++    + V+  LGL    +  V
Sbjct: 152 YFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDV 211

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARGGR 288
                  +SGGE +RV+I   +L +      DEP+S LD    QR+ A   +R LA  G+
Sbjct: 212 -----SELSGGELQRVAIAAALLRDADVYFFDEPSSYLD--IRQRLNAARVIRELAEDGK 264

Query: 289 TVITTIH 295
            VI   H
Sbjct: 265 YVIVVEH 271

Length = 591

>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 55.2 bits (133), Expect = 2e-08
 Identities = 53/219 (24%), Positives = 96/219 (43%), Gaps = 35/219 (15%)

Query: 127 ELLAMLGPSGSGKTTLLTALAGRLRG-----KFSGKITYNGRQFSSS------LKRKTGF 175
           E+ A +GPSG GK+T L     R+       K  G++  +G    S       L+ K G 
Sbjct: 32  EVTAFIGPSGCGKSTFLRCF-NRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGM 90

Query: 176 VTQDDVLYPHLTVLETLSYA----ALLRLPKKLTREEKIEQAEMVIMELGL-----TRCR 226
           V Q    +P  ++ + ++Y      L +  KKL  +E +E++   +  +GL      R +
Sbjct: 91  VFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKL--DEIVEKS---LTSVGLWEELGDRLK 144

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
           +S         +SGG+++R+ I + + V P+ LL+DEP S LD      I   ++ L + 
Sbjct: 145 DSAFE------LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK- 197

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
               I  +     +  ++ D+V     G  +      ++
Sbjct: 198 -NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235

Length = 251

>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 54/209 (25%), Positives = 99/209 (47%), Gaps = 41/209 (19%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-----GKFSGKITYNGRQFSSS-- 168
           + G+    +  ++ A++GPSGSGK+T L +L  R+       + +G+I Y G   +    
Sbjct: 36  IKGIDMQFEKNKITALIGPSGSGKSTYLRSL-NRMNDTIDIARVTGQILYRGIDINRKEI 94

Query: 169 ----LKRKTGFVTQDDVLYPHLTVLETLSYA---ALLRLPKKLTR--EEKIEQA---EMV 216
               +++  G V Q    +   ++ E +++A   A ++  K L    E  ++QA   + V
Sbjct: 95  NVYEMRKHIGMVFQRPNPFAK-SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV 153

Query: 217 IMEL---GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
             +L    LT              +SGG+++R+ I + + V P  LL+DEP S LD  + 
Sbjct: 154 KDDLHKSALT--------------LSGGQQQRLCIARAIAVKPDILLMDEPASALDPIST 199

Query: 274 QRIVATLRGLARGGRTVITTIH--QPSSR 300
            ++  T+  L +   T+I   H  Q ++R
Sbjct: 200 MQLEETMFEL-KKNYTIIIVTHNMQQAAR 227

Length = 267

>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.6 bits (131), Expect = 3e-08
 Identities = 50/200 (25%), Positives = 86/200 (43%), Gaps = 36/200 (18%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL--------AGRLRGKFS--GKITYNGRQ 164
           +L  V+  +    + A++GPSG GK+T +  L          R  G     G   Y+   
Sbjct: 18  ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV 77

Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
               L++K G V Q    +P  ++ + ++Y   LR+  +   E+ IE+           R
Sbjct: 78  DVVELRKKVGMVFQKPNPFPK-SIFDNVAYG--LRIHGE-DDEDFIEE-----------R 122

Query: 225 CRNSVVGGPLFR-----------GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
              S+    L+            G+SGG+++R+ I + + V+P  +L+DEP S LD  + 
Sbjct: 123 VEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPIST 182

Query: 274 QRIVATLRGLARGGRTVITT 293
            +I   +  L      VI T
Sbjct: 183 TKIEDLIHKLKEDYTIVIVT 202

Length = 250

>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional

 Score = 54.4 bits (131), Expect = 5e-08
 Identities = 53/217 (24%), Positives = 99/217 (45%), Gaps = 30/217 (13%)

Query: 109 QTRTVSV-------LNGVSGMVKPGELLAMLGPSGSGKTTLLTAL--------AGRLRGK 153
           +T  ++V       +  V   +   ++ A +GPSG GK+T+L             R+ GK
Sbjct: 12  RTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGK 71

Query: 154 --FSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
             F GK  Y        ++R+ G V Q    +P  ++ + ++Y A +    K   +E +E
Sbjct: 72  VTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARI-NGYKGDMDELVE 129

Query: 212 QA--EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
           ++  +  + +    + + S +       +SGG+++R+ I + + V P  +L+DEP S LD
Sbjct: 130 RSLRQAALWDEVKDKLKQSGLS------LSGGQQQRLCIARAIAVQPEVILMDEPCSALD 183

Query: 270 STTAQRIVATLRGLARGGRTVITTIH--QPSSRLYRM 304
             +  RI   +  L      +I T H  Q ++R+  M
Sbjct: 184 PISTLRIEELMHELKEQYTIIIVT-HNMQQAARVSDM 219

Length = 264

>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional

 Score = 55.5 bits (134), Expect = 6e-08
 Identities = 65/225 (28%), Positives = 109/225 (48%), Gaps = 26/225 (11%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKT-TLLTALAGRLRGK-----FSGKITYN 161
           +Q    +V+N VS  ++ GE LA++G SGSGK+ T L+ L  RL         SG I ++
Sbjct: 17  QQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSIL--RLLPSPPVVYPSGDIRFH 74

Query: 162 GRQF----SSSLKR----KTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIE 211
           G         +L+     K   + Q+ +  L P  T+ + L    +L L + + RE    
Sbjct: 75  GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQL--YEVLSLHRGMRREAA-- 130

Query: 212 QAEMV--IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
           + E++  +  +G+ +    +   P    +SGGER+RV I   +L  P  L+ DEPT+ LD
Sbjct: 131 RGEILNCLDRVGIRQAAKRLTDYP--HQLSGGERQRVMIAMALLTRPELLIADEPTTALD 188

Query: 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
            +   +I+  LR L +     +  I    S + ++ D+V V+  G
Sbjct: 189 VSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNG 233

Length = 529

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 55.9 bits (135), Expect = 7e-08
 Identities = 66/227 (29%), Positives = 98/227 (43%), Gaps = 58/227 (25%)

Query: 115  VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
            VL GVS  + P E + ++G +GSGK+TLL     R+     G+I  NGR+  +     L+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFM-RMVEVCGGEIRVNGREIGAYGLRELR 1383

Query: 171  RKTGFVTQDDVLY---------PHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG 221
            R+   + QD VL+         P L       +AAL                E+V    G
Sbjct: 1384 RQFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAAL----------------ELV----G 1423

Query: 222  LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCL------------LLDEPTSGLD 269
            L     S   G   R + GG     S+GQ  L+   C+            L+DE T+ +D
Sbjct: 1424 LRERVASESEGIDSRVLEGGS--NYSVGQRQLM---CMARALLKKGSGFILMDEATANID 1478

Query: 270  STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM--FDKVVVLSEG 314
                ++I AT+   A    TVIT  H    RL+ +  +DK++V+  G
Sbjct: 1479 PALDRQIQATVMS-AFSAYTVITIAH----RLHTVAQYDKIIVMDHG 1520

Length = 1560

>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 46/237 (19%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTAL--------AGRLRGK--FSGKITYNGRQFSSSLKRK 172
           +  G++ A++GPSG GK+T+L +L           L+G+  F G   Y+ R     ++R+
Sbjct: 36  IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRR 95

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPK----KLTREEKIEQAEMVIMELGLTRCRNS 228
            G V Q    +P  ++ E +++ A +        +L  E  + +A +         C++ 
Sbjct: 96  IGMVFQQPNPFPK-SIYENIAFGARINGYTGDMDELV-ERSLRKAAV------WDECKDK 147

Query: 229 V--VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
           +   G  L    SGG+++R+ I + + + P  +L+DEP S LD  +  +I  T+  L + 
Sbjct: 148 LNESGYSL----SGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKN 203

Query: 287 GRTVITTIH--QPSSRLYRM--FDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFN 339
              VI T H  Q + R+  M  F     +  GS              G +GY+  FN
Sbjct: 204 FTIVIVT-HNMQQAVRVSDMTAFFNAEEVEGGSG-------------GKVGYLVEFN 246

Length = 269

>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

 Score = 55.0 bits (133), Expect = 8e-08
 Identities = 57/215 (26%), Positives = 88/215 (40%), Gaps = 38/215 (17%)

Query: 120 SGMVKPGELLAMLGPSGSGKTTLLTALAGRL---RGKFSG-KITYNGRQFSSSLKRKTGF 175
            G +  GE++ +LGP+G GKTT +  LAG +    G     K++Y           K  +
Sbjct: 361 EGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSY-----------KPQY 409

Query: 176 VTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF 235
           ++ D   Y   TV + L  A          + E       ++  L L       V     
Sbjct: 410 ISPD---YDG-TVEDLLRSAIRSAFGSSYFKTE-------IVKPLNLEDLLERPV----- 453

Query: 236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARG-GRTVIT 292
             +SGGE +RV+I   +       LLDEP++ LD    QRI+    +R       +T + 
Sbjct: 454 DELSGGELQRVAIAAALSREADLYLLDEPSAYLDVE--QRIIVAKVIRRFIENNEKTALV 511

Query: 293 TIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
             H      Y + D+++V  EG P   G A+  M 
Sbjct: 512 VDHDIYMIDY-VSDRLIVF-EGEPGKHGHASPPMS 544

Length = 591

>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 53.9 bits (129), Expect = 8e-08
 Identities = 46/183 (25%), Positives = 86/183 (46%), Gaps = 23/183 (12%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-----RGKFSGKITY---NGRQFSS 167
           L  ++ MV   ++ A++GPSG GK+T L     R+        + G+I     N    S 
Sbjct: 32  LKNINMMVHEKQVTALIGPSGCGKSTFLRCF-NRMHDLYPGNHYEGEIILHPDNVNILSP 90

Query: 168 SL-----KRKTGFVTQDDVLYPHLTVLETLSYAALLR-LPKKLTREEKIEQAEMVIMELG 221
            +     + +   V Q    +P  ++ E ++Y   +R + ++   EE++E A        
Sbjct: 91  EVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWD 149

Query: 222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD---STTAQRIVA 278
             + R     G L   +SGG+++R+ I + +  +P  LL DEPTS LD   + + + +++
Sbjct: 150 EVKDRL----GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELIS 205

Query: 279 TLR 281
            L+
Sbjct: 206 DLK 208

Length = 265

>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional

 Score = 54.8 bits (132), Expect = 1e-07
 Identities = 66/232 (28%), Positives = 100/232 (43%), Gaps = 43/232 (18%)

Query: 105 EPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTAL-------AGRLRGKFSGK 157
           EP    R VSV       V  G+L  +LG +GSGK+TLL +L        GR+  + S  
Sbjct: 671 EPKVLLRDVSV------SVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS-- 722

Query: 158 ITYNGRQ---FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAE 214
           I Y  +Q    +++++    F  ++D       V  +   A L +L   L  E       
Sbjct: 723 IAYVPQQAWIMNATVRGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETE------- 775

Query: 215 MVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
             I E G+               +SGG++ RVS+ + +  N    LLD+P S LD+   +
Sbjct: 776 --IGEKGVN--------------LSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGE 819

Query: 275 RIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           R+V      A  G+T +   HQ    +    D VV L +G   +SG +A  M
Sbjct: 820 RVVEECFLGALAGKTRVLATHQ--VHVVPRADYVVALGDGRVEFSGSSADFM 869

Length = 1560

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 62/225 (27%), Positives = 105/225 (46%), Gaps = 21/225 (9%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-------Q 164
           TV  +  VS  ++ G+ LA++G +GSGK+TL   LAG +    SG+I  N          
Sbjct: 25  TVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGEILINDHPLHFGDYS 83

Query: 165 FSSSLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
           F S   R    + QD    L P L + + L     LRL   L  E++ +Q    +  +GL
Sbjct: 84  FRSKRIR---MIFQDPNTSLNPRLRIGQILD--FPLRLNTDLEPEQRRKQIFETLRMVGL 138

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD-STTAQRIVATLR 281
                +     L    + G+++RV++ + +++ P  ++ DE  + LD S  +Q I   L 
Sbjct: 139 LPDHANYYPHML----APGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLE 194

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
              + G + I  + Q    +  + D+V+V+ EG  +  G  A V+
Sbjct: 195 LQEKQGISYI-YVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238

Length = 267

>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional

 Score = 53.6 bits (129), Expect = 1e-07
 Identities = 50/185 (27%), Positives = 95/185 (51%), Gaps = 17/185 (9%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSS 167
           +T+  ++GV+  +  GE L ++G SG GK+T   A+ G ++    G++ + G+       
Sbjct: 32  KTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKAT-DGEVAWLGKDLLGMKD 90

Query: 168 SLKRKT----GFVTQDDV--LYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMEL 220
              R        + QD +  L P +T+ E +  A  LR    KL+R+E  ++ + +++++
Sbjct: 91  DEWRAVRSDIQMIFQDPLASLNPRMTIGEII--AEPLRTYHPKLSRQEVKDRVKAMMLKV 148

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           GL    N +   P     SGG+ +R+ I + +++ P  ++ DEP S LD +   ++V  L
Sbjct: 149 GLLP--NLINRYP--HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLL 204

Query: 281 RGLAR 285
           + L R
Sbjct: 205 QQLQR 209

Length = 331

>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 17/185 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL---KR 171
           +L  +S  +  G LL + G +G+GKTTLL  +AG L  +  G+I +  +     L   ++
Sbjct: 16  LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPE-KGEILFERQSIKKDLCTYQK 74

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
           +  FV     + P+LT+ E   Y            +       + I EL        ++ 
Sbjct: 75  QLCFVGHRSGINPYLTLRENCLY------------DIHFSPGAVGITELCRLFSLEHLID 122

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
            P    +S G++++V++ +  +      LLDEP   LD  +   I+  ++     G  V+
Sbjct: 123 YPCGL-LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVL 181

Query: 292 TTIHQ 296
            T HQ
Sbjct: 182 LTSHQ 186

Length = 200

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 36/153 (23%), Positives = 61/153 (39%), Gaps = 9/153 (5%)

Query: 478 LLFFFSIFWGFFPLNNAIFVFPQERAMLIKER--SSGMYRLSSYYFARMVGDLPMELVLP 535
           LL                    +E+   IKER   SG+     Y   +++GDL + L+  
Sbjct: 97  LLGLLLFLLILIGALIIALSIVEEKESRIKERLLVSGV-SPLKYLLGKILGDLLVGLI-- 153

Query: 536 TIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTML 595
            + I +    G   P     LL L  +L+  L   +LG LLG++  + + A  + S+ +L
Sbjct: 154 QLLIILLLLFGLGIPFGNLLLLLLLFLLY-GLAYIALGALLGSLFKNSEAAILVISILIL 212

Query: 596 VF--LMAGGYYIQHMSPFIAW-LKYISFSHYCY 625
           +      G + + +M  F+ W    I F     
Sbjct: 213 LLSGFFGGLFPLPNMPSFLQWIFSIIPFFAPID 245

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
           SGGE+ R+++ + +L NP+ LLLDEPT+ LD  + + +   L+       TVI   H
Sbjct: 72  SGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYP---GTVILVSH 125

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 57/201 (28%), Positives = 89/201 (44%), Gaps = 45/201 (22%)

Query: 104 GEPNKQTRTVSV-------LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR----- 151
            E   + R VSV       L  V   +    + A +GPSG GK+T L  L  R+      
Sbjct: 16  TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCL-NRMNDTIDG 74

Query: 152 GKFSGKITYNGRQFSSS------LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK--K 203
            + +GKIT +G            L+ + G V Q    +P  ++ E ++Y      P+   
Sbjct: 75  CRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYG-----PRIHG 128

Query: 204 LTREEKIEQAEM-VIMELGLTRC--------RNSVVGGPLFRGISGGERKRVSIGQEMLV 254
           L R     +AE+  I+E  L +         R    G     G+SGG+++R+ I + + V
Sbjct: 129 LARS----KAELDEIVETSLRKAGLWEEVKDRLHEPG----TGLSGGQQQRLCIARAIAV 180

Query: 255 NPSCLLLDEPTSGLDS-TTAQ 274
           +P  +L+DEP S LD   TA+
Sbjct: 181 SPEVILMDEPCSALDPIATAK 201

Length = 267

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 52.3 bits (126), Expect = 5e-07
 Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 25/214 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLK 170
           +N VS  ++ GE+L + G  G+G+T L+  L G L  + SG +T +G +  +      L 
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP-RTSGYVTLDGHEVVTRSPQDGLA 326

Query: 171 RKTGFVTQD---DVLYPHLTVLETLSYAALLRLPKKLTR----EEKIEQAEMVIMELGLT 223
               ++++D   D L   ++V E +S  AL    +        +E+   ++ + +    T
Sbjct: 327 NGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKT 386

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                 +G      +SGG +++V+I + ++  P  L+LDEPT G+D    + I   +   
Sbjct: 387 PSMEQAIGL-----LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF 441

Query: 284 ARGGRTVITTIHQPSSRLYR---MFDKVVVLSEG 314
              G ++I      SS +     M D+++V+ EG
Sbjct: 442 KAEGLSIILV----SSEMPEVLGMSDRILVMHEG 471

Length = 501

>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA

 Score = 49.6 bits (119), Expect = 6e-07
 Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 14/141 (9%)

Query: 188 VLETLSYAALLRLPKKLTREEK-----IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGE 242
           V E L  +   RL   L +  +     I+Q + +I ++GL       +G  L   +SGGE
Sbjct: 38  VNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLI-DVGLGYLT---LGQKL-STLSGGE 92

Query: 243 RKRVSIGQEMLVNP--SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR 300
            +RV +  E+   P  +  +LDEP++GL      +++  ++GL   G TVI   H     
Sbjct: 93  LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNL--D 150

Query: 301 LYRMFDKVVVLSEGSPIYSGR 321
           +    D ++    GS    G+
Sbjct: 151 VLSSADWIIDFGPGSGKSGGK 171

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176

>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed

 Score = 52.0 bits (126), Expect = 7e-07
 Identities = 58/199 (29%), Positives = 90/199 (45%), Gaps = 56/199 (28%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           P KQ     +L  +S    PG  + +LG +G+GK+TLL  +AG +  +F G+      + 
Sbjct: 18  PKKQ-----ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAG-VDKEFEGEA-----RP 66

Query: 166 SSSLKRKTGFVTQDDVLYPHLTVLETLS------YAALLR-----------------LPK 202
           +  +K   G++ Q+  L P  TV E +        AAL R                 L  
Sbjct: 67  APGIKV--GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAA 124

Query: 203 KLTR-EEKIE---------QAEMVIMELGLTRC--RNSVVGGPLFRGISGGERKRVSIGQ 250
           +    +E I+         Q E+ +  L   RC   ++ V       +SGGER+RV++ +
Sbjct: 125 EQGELQEIIDAADAWDLDSQLEIAMDAL---RCPPWDAKVTK-----LSGGERRRVALCR 176

Query: 251 EMLVNPSCLLLDEPTSGLD 269
            +L  P  LLLDEPT+ LD
Sbjct: 177 LLLEKPDMLLLDEPTNHLD 195

Length = 556

>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional

 Score = 52.4 bits (126), Expect = 7e-07
 Identities = 51/201 (25%), Positives = 91/201 (45%), Gaps = 34/201 (16%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVL 182
           V  G L+A++G +G GKT+L++A+ G L  +    +   G            +V Q   +
Sbjct: 640 VPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGT---------VAYVPQVSWI 690

Query: 183 YPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF----RG- 237
           + + TV + +    L   P    R E+       I    L    + + GG L     RG 
Sbjct: 691 F-NATVRDNI----LFGSPFDPERYER------AIDVTALQHDLDLLPGGDLTEIGERGV 739

Query: 238 -ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT-LRGLARGGRTVITT-- 293
            ISGG+++RVS+ + +  N    + D+P S LD+   +++    ++   RG   V+ T  
Sbjct: 740 NISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQ 799

Query: 294 IHQPSSRLYRMFDKVVVLSEG 314
           +H  S       D+++++ EG
Sbjct: 800 LHFLSQ-----VDRIILVHEG 815

Length = 1622

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 48.9 bits (116), Expect = 8e-07
 Identities = 45/197 (22%), Positives = 66/197 (33%), Gaps = 63/197 (31%)

Query: 125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYP 184
           PGE++ ++GP GSGKTTL  ALA  L     G I  +G                      
Sbjct: 1   PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDG---------------------- 38

Query: 185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERK 244
                E +    L +L   +   +K   +  + + L L   R                  
Sbjct: 39  -----EDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKL---------------- 77

Query: 245 RVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG------LARGGRTVITTIHQP- 297
                      P  L+LDE TS LD+     ++            +    TVI T +   
Sbjct: 78  ----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEK 127

Query: 298 ---SSRLYRMFDKVVVL 311
               + L R FD+ +VL
Sbjct: 128 DLGPALLRRRFDRRIVL 144

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 51.9 bits (125), Expect = 8e-07
 Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 36/175 (20%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SL 169
           +L+ +S  V PGE   ++GP+G+GK+TLL+ + G     +S  +T  GR+  S      +
Sbjct: 275 ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI 334

Query: 170 KRKTGFVTQDDVLYPHL------TVLET-LS--------YAALLRLPKKLTREEKIEQAE 214
           K+  G+V+       HL      +V    LS        Y A+    +KL ++       
Sbjct: 335 KKHIGYVSSS----LHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQ------- 383

Query: 215 MVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
             +  LG+          P F  +S G+++   I + ++ +P+ L+LDEP  GLD
Sbjct: 384 -WLDILGID---KRTADAP-FHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLD 433

Length = 490

>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional

 Score = 50.8 bits (121), Expect = 8e-07
 Identities = 43/165 (26%), Positives = 76/165 (46%), Gaps = 18/165 (10%)

Query: 123 VKPGELLAMLGPSGSGKTTLLTAL--------AGRLRGK--FSGKITYNGRQFSSSLKRK 172
           ++  E+   +GPSG GK+T+L +L          R  G   F G+  Y        ++R 
Sbjct: 31  IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVG 231
            G V Q    +  +++ + +++   LRL + K    ++++ A          + +  V G
Sbjct: 91  IGMVFQQPNPFS-MSIFDNVAFG--LRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSG 147

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
             L    SGG+++R+ I + +   P  LLLDEP S LD    +R+
Sbjct: 148 LSL----SGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRV 188

Length = 261

>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 46/196 (23%), Positives = 93/196 (47%), Gaps = 20/196 (10%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRK 172
           ++ L+ ++  +  G+L  ++G  G GK++LL A+ G ++    GK+ ++ +  S      
Sbjct: 14  LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ-TLEGKVHWSNKNESEPSFEA 72

Query: 173 TGFVTQDDVLY----PHL---TVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTR 224
           T    +  V Y    P L   TV E +++ +     + K   +    Q ++ ++  G   
Sbjct: 73  TRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFG--- 129

Query: 225 CRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV--ATL 280
              + +G    RGI  SGG+R+R+ + + +  N + + LD+P S LD   +  ++    L
Sbjct: 130 -DQTEIGE---RGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGIL 185

Query: 281 RGLARGGRTVITTIHQ 296
           + L    RT++   H+
Sbjct: 186 KFLQDDKRTLVLVTHK 201

The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 51.5 bits (124), Expect = 9e-07
 Identities = 59/224 (26%), Positives = 103/224 (45%), Gaps = 39/224 (17%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-----S 167
           V  L+G +  V PG ++A++G +G+GK+T++  L G +  + +G I Y G++ +     S
Sbjct: 17  VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTG-IYTRDAGSILYLGKEVTFNGPKS 75

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTRE-----------EKIEQAEMV 216
           S +   G + Q+  L P LT+ E +           L RE           +   +A+ +
Sbjct: 76  SQEAGIGIIHQELNLIPQLTIAENIF----------LGREFVNRFGRIDWKKMYAEADKL 125

Query: 217 IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
           +  L L    + +VG      +S GE++ V I + +      +++DEPT  L  T  + +
Sbjct: 126 LARLNLRFSSDKLVG-----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESL 180

Query: 277 VATLRGLARGGRTVITTIHQPSSRLYRMF---DKVVVLSEGSPI 317
              +R L   GR ++   H    RL  +F   D V V  +G  I
Sbjct: 181 FRVIRELKSQGRGIVYISH----RLKEIFEICDDVTVFRDGQFI 220

Length = 501

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 51.7 bits (125), Expect = 1e-06
 Identities = 62/226 (27%), Positives = 95/226 (42%), Gaps = 60/226 (26%)

Query: 120 SGMVKPGELLAMLGPSGSGKTTLLTALAGRL---RGKFSG--KITYNGRQFSSSLKRKTG 174
            G +  GE++ ++GP+G GKTT    LAG L    G+     KI+Y           K  
Sbjct: 359 GGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISY-----------KPQ 407

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
           ++  D       TV + L       +   L       ++E +I  L L R  +  V    
Sbjct: 408 YIKPD----YDGTVEDLLR-----SITDDL--GSSYYKSE-IIKPLQLERLLDKNV---- 451

Query: 235 FRGISGGERKRVSIGQEMLVNPSCL-------LLDEPTSGLDSTTAQRIVAT--LRGLAR 285
            + +SGGE +RV+I        +CL       LLDEP++ LD    QR+     +R +A 
Sbjct: 452 -KDLSGGELQRVAIA-------ACLSRDADLYLLDEPSAHLDVE--QRLAVAKAIRRIAE 501

Query: 286 G-GRTVITTIHQPSSRLYRM---FDKVVVLSEGSPIYSGRAAQVMD 327
               T +   H     +Y +    D+++V  EG P   G A+  MD
Sbjct: 502 EREATALVVDHD----IYMIDYISDRLMVF-EGEPGKHGHASGPMD 542

Length = 590

>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional

 Score = 51.3 bits (124), Expect = 1e-06
 Identities = 54/190 (28%), Positives = 87/190 (45%), Gaps = 31/190 (16%)

Query: 122 MVKPGELLAMLGPSGSGKTTLLTALAGRLR---GKFSGKITYNGRQFSSSLKRKTGFVTQ 178
           + K G++  +LGP+G GKTT +  L+G L    G +  + +++       LKR  G   Q
Sbjct: 95  IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDE-----VLKRFRGTELQ 149

Query: 179 D---DVLYPHLTVLETLSYAALLRLPKKL---TRE--EKIEQAEM---VIMELGLTRCRN 227
           +    +    + V+    Y  L  +PK      RE  +K+++      V+  LGL    +
Sbjct: 150 NYFKKLYNGEIKVVHKPQYVDL--IPKVFKGKVRELLKKVDERGKLDEVVERLGLENILD 207

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA--TLRGLAR 285
             +       +SGGE +RV+I   +L +      DEPTS LD    QR+     +R LA 
Sbjct: 208 RDI-----SELSGGELQRVAIAAALLRDADFYFFDEPTSYLD--IRQRLNVARLIRELAE 260

Query: 286 GGRTVITTIH 295
            G+ V+   H
Sbjct: 261 -GKYVLVVEH 269

Length = 590

>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 53/218 (24%), Positives = 104/218 (47%), Gaps = 17/218 (7%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS----LKR 171
           L  VS  +  G+  +++G +GSGK+T+   + G  + K SG+I YN +  +      L++
Sbjct: 25  LKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVK-SGEIFYNNQAITDDNFEKLRK 83

Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-EQAEMVIMELGLTRCRNSVV 230
             G V Q+     +  V   + Y     L       +++  +    + ++ +    +   
Sbjct: 84  HIGIVFQNP---DNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADY-- 138

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRT 289
             P    +SGG+++RV+I   + +NPS ++LDE TS LD    Q ++  +R + +    T
Sbjct: 139 -EP--NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNIT 195

Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           +I+  H  S  +    D V+V+++G+    G   ++ D
Sbjct: 196 IISITHDLSEAMEA--DHVIVMNKGTVYKEGTPTEIFD 231

Length = 269

>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 14/213 (6%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG------KITYNGRQFSS-- 167
           LN  S   K  ++  ++G +GSGK+T++    G +  +          I  N ++     
Sbjct: 27  LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
            L+++ G V Q    +P   + +      +   P  L  E K E  + V   L L +   
Sbjct: 87  RLRKEIGLVFQ----FPEYQLFQETIEKDIAFGPVNLG-ENKQEAYKKVPELLKLVQLPE 141

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
             V    F  +SGG+++RV++   + ++ + L+LDEPT GLD    +  +     L +  
Sbjct: 142 DYVKRSPFE-LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEY 200

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           +  I  +     ++ R+ D+V+V+ EG  I  G
Sbjct: 201 KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233

Length = 289

>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 18/127 (14%)

Query: 187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRV 246
           T+L+ +  A         TR     +A       G      S         +SGGE++  
Sbjct: 36  TILDAIGLALGGAQSA--TRRRSGVKA-------GCIVAAVSAELIFTRLQLSGGEKELS 86

Query: 247 SIG---QEMLVNPSCL-LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP----- 297
           ++        + P  L +LDE   GLD    Q +   +      G  VI   H P     
Sbjct: 87  ALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAEL 146

Query: 298 SSRLYRM 304
           + +L  +
Sbjct: 147 ADKLIHI 153

ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162

>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

 Score = 50.4 bits (121), Expect = 2e-06
 Identities = 58/211 (27%), Positives = 95/211 (45%), Gaps = 28/211 (13%)

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKR-KTGF 175
           +S  V+ GE+L + G  G+G+T L   L G LR    G+I  NG++ +  S+ +R   G 
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYG-LRPARGGRIMLNGKEINALSTAQRLARGL 340

Query: 176 V-----TQDDVLYPHLTVLETLSYAALL--RLP--KKLTREEKIEQAEMVIMELGLTRCR 226
           V      Q   LY  L      +  AL   R     K  RE  + +     + +      
Sbjct: 341 VYLPEDRQSSGLY--LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAE 398

Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
            +       R +SGG +++V I + +  +P  L++DEPT G+D +    I   +R +A  
Sbjct: 399 QAA------RTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQ 452

Query: 287 GRTVITTIHQPSSRLY---RMFDKVVVLSEG 314
              V+      SS L    +M D+V+V+ +G
Sbjct: 453 NVAVLFI----SSDLEEIEQMADRVLVMHQG 479

Length = 510

>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 22/203 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           VLN +   +  G+ +A++G SG GK+TLL  LAG L    +G++   G    +  +  T 
Sbjct: 27  VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAG-LETPSAGEL-LAGTAPLAEAREDTR 84

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
            + QD  L P   V++ +     L L     + +  + A   +  +GL    N       
Sbjct: 85  LMFQDARLLPWKKVIDNVG----LGL-----KGQWRDAALQALAAVGLADRANEWPAA-- 133

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT---AQRIVATLRGLARGGRTVI 291
              +SGG+++RV++ + ++  P  LLLDEP   LD+ T    Q ++ +L    + G TV+
Sbjct: 134 ---LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESL--WQQHGFTVL 188

Query: 292 TTIHQPSSRLYRMFDKVVVLSEG 314
              H  S  +  M D+V+++ EG
Sbjct: 189 LVTHDVSEAV-AMADRVLLIEEG 210

Length = 257

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 49.7 bits (119), Expect = 3e-06
 Identities = 54/214 (25%), Positives = 95/214 (44%), Gaps = 25/214 (11%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL------ 169
           +  VS  +  GE+L + G  G+ +T ++  L G +R K +G IT +G++ ++        
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFG-IREKSAGTITLHGKKINNHNANEAIN 322

Query: 170 ---------KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL 220
                    +R TG     D+ +  L +    +Y   + L   L         + VI  +
Sbjct: 323 HGFALVTEERRSTGIYAYLDIGFNSL-ISNIRNYKNKVGL---LDNSRMKSDTQWVIDSM 378

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
            +    +    G L    SGG +++V IG+ +L  P  L+LDEPT G+D      I   +
Sbjct: 379 RVKTPGHRTQIGSL----SGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLI 434

Query: 281 RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
             LA+  + +I  I      L  + D+++V+S G
Sbjct: 435 AELAKKDKGII-IISSEMPELLGITDRILVMSNG 467

Length = 491

>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family

 Score = 49.5 bits (119), Expect = 4e-06
 Identities = 54/181 (29%), Positives = 84/181 (46%), Gaps = 47/181 (25%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           +++ +S  + PG ++ ++GP+G+GK+TL   + G+ +   SG I         ++K    
Sbjct: 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPD-SGTIK-----IGETVK--LA 388

Query: 175 FVTQD-DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS--VVG 231
           +V Q  D L P+ TV E +S                    +  I++LG  R   S   VG
Sbjct: 389 YVDQSRDALDPNKTVWEEIS-----------------GGLD--IIQLG-KREVPSRAYVG 428

Query: 232 GPLFRG---------ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
              F+G         +SGGER RV + + +    + LLLDEPT+ LD       V TLR 
Sbjct: 429 RFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD-------VETLRA 481

Query: 283 L 283
           L
Sbjct: 482 L 482

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552

>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional

 Score = 48.6 bits (116), Expect = 5e-06
 Identities = 55/222 (24%), Positives = 103/222 (46%), Gaps = 21/222 (9%)

Query: 119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--GKFSG-KITYNGR---QFSSSLKRK 172
           +S  VK GE++ ++G SGSGK+    A+ G +   G+    K+ +NG+   + S   +R 
Sbjct: 26  ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRN 85

Query: 173 -----TGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL--T 223
                   + QD +  L P  TV   +  A  +++ +   ++ + ++A  ++ ++G+   
Sbjct: 86  LVGAEVAMIFQDPMTSLNPCYTVGFQIMEA--IKVHQGGNKKTRRQRAIDLLNQVGIPDP 143

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
             R  V    L    SGG  +RV I   +   P  L+ DEPT+ LD T   +I+  L  L
Sbjct: 144 ASRLDVYPHQL----SGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL 199

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            +     +  I    + +     K++V+  G  + +G+A  +
Sbjct: 200 QQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241

Length = 326

>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 64/235 (27%), Positives = 103/235 (43%), Gaps = 51/235 (21%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF---SGKITYNGRQFSS---- 167
           VL  ++  V     +A++G +GSGK+TL    A  L G +    G+I  +GR  SS    
Sbjct: 356 VLQNINLSVPSRGFVALVGHTGSGKSTL----ASLLMGYYPLTEGEIRLDGRPLSSLSHS 411

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGLTRCR 226
            L++    V QD V      VL   ++ A + L + ++ EE++ QA E V +        
Sbjct: 412 VLRQGVAMVQQDPV------VLAD-TFLANVTLGRDIS-EEQVWQALETVQL-------- 455

Query: 227 NSVVGGPLFRGISGGERKRV-------SIGQEMLV--------NPSCLLLDEPTSGLDST 271
                  L R +  G    +       S+GQ+ L+         P  L+LDE T+ +DS 
Sbjct: 456 -----AELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510

Query: 272 TAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           T Q I   L    R   T++   H+ S+ +    D ++VL  G  +  G   Q++
Sbjct: 511 TEQAIQQALA-AVREHTTLVVIAHRLSTIVEA--DTILVLHRGQAVEQGTHQQLL 562

Length = 592

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 45.5 bits (109), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 6/71 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----- 167
           V  L+GVS  V+ GE+ A+LG +G+GK+TL+  L+G L    SG+I  +G++ S      
Sbjct: 13  VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSG-LYKPDSGEILVDGKEVSFASPRD 71

Query: 168 SLKRKTGFVTQ 178
           + +     V Q
Sbjct: 72  ARRAGIAMVYQ 82

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 50/222 (22%), Positives = 103/222 (46%), Gaps = 13/222 (5%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS---- 166
           +TV  +  +S  ++ G+ LA++G +GSGK+TL   LAG +    SG++  +         
Sbjct: 24  QTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT-SGELLIDDHPLHFGDY 82

Query: 167 SSLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
           S   ++   + QD    L P   + + L +   LRL   L  E++ +Q    + ++GL  
Sbjct: 83  SYRSQRIRMIFQDPSTSLNPRQRISQILDFP--LRLNTDLEPEQREKQIIETLRQVGLLP 140

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
              S     L    + G+++R+ + + +++ P  ++ DE  + LD +   +++  +  L 
Sbjct: 141 DHASYYPHML----APGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQ 196

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
                    + Q    +  + D+V+V+ +G  +  G  A V+
Sbjct: 197 EKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238

Length = 267

>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR)

 Score = 47.6 bits (113), Expect = 2e-05
 Identities = 51/181 (28%), Positives = 91/181 (50%), Gaps = 29/181 (16%)

Query: 114  SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-SLK-- 170
            +VL  +S  V+ G+ + +LG +GSGK+TLL+AL  RL     G+I  +G  ++S +L+  
Sbjct: 1233 AVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALL-RLLST-EGEIQIDGVSWNSVTLQTW 1290

Query: 171  RKT-GFVTQDDVLYP-----HLTVLETLSYAALLRLPKKLTREEKIEQ----AEMVIMEL 220
            RK  G + Q   ++      +L   E  S   + ++ +++  +  IEQ     + V+++ 
Sbjct: 1291 RKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDG 1350

Query: 221  GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
            G                +S G ++ + + + +L     LLLDEP++ LD  T Q I  TL
Sbjct: 1351 GYV--------------LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTL 1396

Query: 281  R 281
            +
Sbjct: 1397 K 1397

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490

>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F

 Score = 44.7 bits (107), Expect = 2e-05
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-------QFS 166
           +L  +S  + PG+ + ++G +G+GK+TLL  +AG L     G +T+          Q S
Sbjct: 15  LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE-PDEGIVTWGSTVKIGYFEQLS 72

Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144

>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 53/196 (27%), Positives = 94/196 (47%), Gaps = 30/196 (15%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-SLK-- 170
           +VL  +S  + PG+ + +LG +GSGK+TLL+A    L  +  G I  +G  ++S  L+  
Sbjct: 18  AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE--GDIQIDGVSWNSVPLQKW 75

Query: 171 RKT-GFVTQDDVLYP-----HLTVLETLSYAALLRLPKKLTREEKIEQ----AEMVIMEL 220
           RK  G + Q   ++      +L      S   + ++ +++  +  IEQ     + V+++ 
Sbjct: 76  RKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDG 135

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           G                +S G ++ + + + +L     LLLDEP++ LD  T Q I  TL
Sbjct: 136 GCV--------------LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTL 181

Query: 281 RGLARGGRTVITTIHQ 296
           +  A    TVI + H+
Sbjct: 182 KQ-AFADCTVILSEHR 196

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275

>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional

 Score = 46.9 bits (111), Expect = 3e-05
 Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
           +SGG+++R+SI + ++ NP  L+LDE TS LD+ +   +  T+  L +G    IT I   
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNL-KGNENRITIIIAH 638

Query: 298 SSRLYRMFDKVVVLS 312
                R  + + VLS
Sbjct: 639 RLSTIRYANTIFVLS 653

Length = 1466

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 47.3 bits (112), Expect = 3e-05
 Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 16/189 (8%)

Query: 126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPH 185
           G L+A++G +G GKT+L++A+ G L    +  +   G            +V Q   ++ +
Sbjct: 643 GSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG---------SVAYVPQVSWIF-N 692

Query: 186 LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKR 245
            TV E + + +      +  R  +      +  +L L   R+    G     ISGG+++R
Sbjct: 693 ATVRENILFGSDF----ESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQR 748

Query: 246 VSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF 305
           VS+ + +  N    + D+P S LD+  A ++  +       G+T +   +Q       + 
Sbjct: 749 VSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQ--LHFLPLM 806

Query: 306 DKVVVLSEG 314
           D+++++SEG
Sbjct: 807 DRIILVSEG 815

Length = 1495

>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

 Score = 45.9 bits (109), Expect = 6e-05
 Identities = 52/210 (24%), Positives = 98/210 (46%), Gaps = 18/210 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--QFSSS-- 168
           V  L+ V+  V+P  + A++G +G+GK+TLL  L G +  K SG I + G+   F SS  
Sbjct: 11  VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFG-IYQKDSGSILFQGKEIDFKSSKE 69

Query: 169 -LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK--LTREEKI-EQAEMVIMELGLTR 224
            L+     V Q+  L    +V++ +    L R P K     ++K+    + +  EL +  
Sbjct: 70  ALENGISMVHQELNLVLQRSVMDNM---WLGRYPTKGMFVDQDKMYRDTKAIFDELDIDI 126

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
              + V       +S  + + + I +    N   +++DEPTS L       +   +R L 
Sbjct: 127 DPRAKVA-----TLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLK 181

Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
             G  ++   H+    ++++ D++ +L +G
Sbjct: 182 ERGCGIVYISHK-MEEIFQLCDEITILRDG 210

Length = 491

>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 28/195 (14%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
           P  + +T   L+ +S     G+++ ++G +GSGK+TL   + G L     GK+  NG   
Sbjct: 30  PKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPT-VGKVDRNGE-- 86

Query: 166 SSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL-----RLPKKLTREEKIEQAEMVIMEL 220
            S +    G   Q       LT +E + +  L      +  K +T  + IE       EL
Sbjct: 87  VSVIAISAGLSGQ-------LTGIENIEFKMLCMGFKRKEIKAMT-PKIIE-----FSEL 133

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
           G        +  P+ +  S G R ++     + VNP  L++DE  S  D T AQ+ +  +
Sbjct: 134 G------EFIYQPV-KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI 186

Query: 281 RGLARGGRTVITTIH 295
                  +T+    H
Sbjct: 187 YEFKEQNKTIFFVSH 201

Length = 264

>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional

 Score = 45.0 bits (107), Expect = 1e-04
 Identities = 52/231 (22%), Positives = 84/231 (36%), Gaps = 73/231 (31%)

Query: 90  NLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR 149
           +L  S+G  F  S       T+T+ +    S  +  G+  A +G +GSGK+ L  ALAG 
Sbjct: 3   SLQISQG-TFRLS------DTKTLQL---PSLTLNAGDSWAFVGANGSGKSALARALAGE 52

Query: 150 LRGKFSGKITYNGRQFSS-------SLKRKTGFVTQD------DVLYPH-----LTVLET 191
           L          +G + S        S ++    V+ +      D+L P       T  E 
Sbjct: 53  L-------PLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEI 105

Query: 192 -----------LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISG 240
                         A    +   L R                            F+ +S 
Sbjct: 106 IQDEVKDPARCEQLAQQFGITALLDRR---------------------------FKYLST 138

Query: 241 GERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
           GE ++  + Q ++  P  L+LDEP  GLD  + Q++   L  L + G T++
Sbjct: 139 GETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLV 189

Length = 490

>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 58/223 (26%), Positives = 100/223 (44%), Gaps = 32/223 (14%)

Query: 115  VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS----SSLK 170
            VL+G+S  V P E + ++G +G+GK+++L AL  R+     G+I  +    +    + L+
Sbjct: 1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALF-RIVELEKGRIMIDDCDVAKFGLTDLR 1309

Query: 171  RKTGFVTQDDVLYPHLTV---LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
            R    + Q  VL+   TV   ++  S      L + L R    +  +     L       
Sbjct: 1310 RVLSIIPQSPVLFSG-TVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSE- 1367

Query: 228  SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
               GG  F   S G+R+ +S+ + +L     L+LDE T+ +D  T   I  T+R   +  
Sbjct: 1368 ---GGENF---SVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421

Query: 288  RTVITTIHQPSSRLYRMF--DKVVVLSEGSPIYSGRAAQVMDY 328
              ++      + RL  +   DK++VLS G         QV++Y
Sbjct: 1422 TMLVI-----AHRLNTIIDCDKILVLSSG---------QVLEY 1450

Length = 1495

>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 33/102 (32%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT---LRG 282
             + V  P +  +SGGE +RV+I   +L N +  L DEP++ LD    QR+ A     R 
Sbjct: 60  GITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE--QRLNAARAIRRL 117

Query: 283 LARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQ 324
              G +T +   H  +   Y + D++ V  EG P   G A+Q
Sbjct: 118 SEEGKKTALVVEHDLAVLDY-LSDRIHVF-EGEPGVYGIASQ 157

The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177

>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 42/194 (21%), Positives = 81/194 (41%), Gaps = 20/194 (10%)

Query: 126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPH 185
           G+++ ++G +G GK+TL     G    +  G+I  +G   S+         ++DD  Y  
Sbjct: 368 GDIVFIVGENGCGKSTLAKLFCGLYIPQ-EGEILLDGAAVSAD--------SRDD--YRD 416

Query: 186 LTVLETLSYAALLRLPKKLTREE-KIEQAEMVIMELGLTRCRNSVVGG--PLFRGISGGE 242
           L       +     L      E   ++ A+  +  L +   +  +  G       +S G+
Sbjct: 417 LFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIAD-KVKIEDGGFSTTTALSTGQ 475

Query: 243 RKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT--LRGLARGGRTVITTIHQPSSR 300
           +KR+++    L +   LL DE  +  D    +R      L  L R G+T+I   H    +
Sbjct: 476 QKRLALICAWLEDRPILLFDEWAADQDPAF-KRFFYEELLPDLKRQGKTIIIISH--DDQ 532

Query: 301 LYRMFDKVVVLSEG 314
            + + D+++ L+ G
Sbjct: 533 YFELADQIIKLAAG 546

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555

>gnl|CDD|226425 COG3910, COG3910, Predicted ATPase [General function prediction only]

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 40/170 (23%), Positives = 61/170 (35%), Gaps = 30/170 (17%)

Query: 133 GPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192
           G +GSGK+TLL A+A  +    +G     G+ F   L                 +    +
Sbjct: 44  GENGSGKSTLLEAIAAGMGFNAAG----GGKNFKGELD---------------ASHSALV 84

Query: 193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV-----VGGPLFRGISGGERKRVS 247
            YA L +  K         +AE       +    +        GG     +S GE   ++
Sbjct: 85  DYAKLHKRKKPPIG--FFLRAESF---YNVASYLDEADGEANYGGRSLHHMSHGE-SFLA 138

Query: 248 IGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP 297
           I           +LDEP + L  +    ++A LR LA  G  +I   H P
Sbjct: 139 IFHNRFNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP 188

Length = 233

>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 38/150 (25%), Positives = 52/150 (34%), Gaps = 36/150 (24%)

Query: 133 GPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL 192
           G +G+GKTT++ AL   L G+        G      L R+                 E  
Sbjct: 29  GQNGAGKTTIIEALKYALTGELP--PNSKGGAHDPKLIREG----------------EVR 70

Query: 193 SYAAL---LRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI---SGGERK-- 244
           +   L       KK T    +   E VI       C       PL       SGGE+   
Sbjct: 71  AQVKLAFENANGKKYTITRSLAILENVIF------CHQGESNWPLLDMRGRCSGGEKVLA 124

Query: 245 ----RVSIGQEMLVNPSCLLLDEPTSGLDS 270
               R+++ +    N   L LDEPT+ LD 
Sbjct: 125 SLIIRLALAETFGSNCGILALDEPTTNLDE 154

The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 44.0 bits (104), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 14/68 (20%)

Query: 239 SGGERKRVSI-----------GQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
           SGGER   S+           G+  L     L LDEP   LD    +++   L  L   G
Sbjct: 817 SGGERFLASLALRLALSDLLQGRARL---ELLFLDEPFGTLDEERLEKLAEILEELLSDG 873

Query: 288 RTVITTIH 295
           R +I   H
Sbjct: 874 RQIIIISH 881

Length = 908

>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed

 Score = 43.8 bits (104), Expect = 3e-04
 Identities = 52/176 (29%), Positives = 78/176 (44%), Gaps = 54/176 (30%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGF 175
           +   S  V+ G+ +A++GP+G GKTTLL  + G+L+   SG+I               G 
Sbjct: 335 VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQAD-SGRI-------------HCG- 379

Query: 176 VTQDDVLY---------PHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
            T+ +V Y         P  TV++ L+             E K E     +M  G  R  
Sbjct: 380 -TKLEVAYFDQHRAELDPEKTVMDNLA-------------EGKQE-----VMVNGRPRHV 420

Query: 227 NSVVGGPLF---------RGISGGERKRVSIGQEMLVNPSCLL-LDEPTSGLDSTT 272
              +   LF         + +SGGER R+ + + + + PS LL LDEPT+ LD  T
Sbjct: 421 LGYLQDFLFHPKRAMTPVKALSGGERNRLLLAR-LFLKPSNLLILDEPTNDLDVET 475

Length = 635

>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional

 Score = 43.2 bits (102), Expect = 4e-04
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 39/165 (23%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY-NGRQFSSSLKRKT 173
           +L+ +   + PG  + +LG +G+GK+TL+  LAG L    SG+I    G +     + + 
Sbjct: 327 ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA-PVSGEIGLAKGIKLGYFAQHQL 385

Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
            F+  D+    HL            RL  +   E+K+                   +GG 
Sbjct: 386 EFLRADESPLQHLA-----------RLAPQEL-EQKLR----------------DYLGGF 417

Query: 234 LFRG---------ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
            F+G          SGGE+ R+ +   +   P+ LLLDEPT+ LD
Sbjct: 418 GFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLD 462

Length = 638

>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional

 Score = 42.2 bits (99), Expect = 0.001
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 28/163 (17%)

Query: 129 LAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTV 188
           +AM+GP+G GK+T+L  ++G L+         +G  F S+  R   F         H+  
Sbjct: 538 IAMVGPNGIGKSTILKLISGELQ-------PSSGTVFRSAKVRMAVFSQH------HVDG 584

Query: 189 LETLSYAALLRLPKKL--TREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRV 246
           L+ LS   LL + +      E+K+         LG      ++   P++  +SGG++ RV
Sbjct: 585 LD-LSSNPLLYMMRCFPGVPEQKLRA------HLGSFGVTGNLALQPMYT-LSGGQKSRV 636

Query: 247 SIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA--RGG 287
           +  +     P  LLLDEP++ LD    +   A ++GL   +GG
Sbjct: 637 AFAKITFKKPHILLLDEPSNHLDLDAVE---ALIQGLVLFQGG 676

Length = 718

>gnl|CDD|222036 pfam13304, AAA_21, AAA domain

 Score = 40.9 bits (95), Expect = 0.001
 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 234 LFRGISGGERKRVSIG---QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           L +GIS G ++ +++       L   S LL+DEP +GL     +++V  L+ L+  G  +
Sbjct: 186 LIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKGAQL 245

Query: 291 ITTIHQPS 298
           I T H P 
Sbjct: 246 IFTTHSPL 253

Length = 256

>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional

 Score = 41.4 bits (97), Expect = 0.002
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 4/69 (5%)

Query: 230 VGGPLFRGISGGERKRVSIGQEMLV---NPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
           +G PL   +SGGE +R+ +  E+L     P+  +LDEPT+GL +   + ++  L+ L   
Sbjct: 803 LGRPLS-SLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861

Query: 287 GRTVITTIH 295
           G TV+   H
Sbjct: 862 GHTVVIIEH 870

Length = 1809

>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional

 Score = 40.7 bits (96), Expect = 0.003
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 15/88 (17%)

Query: 234 LFRGISGGERKRVSIG----QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
           L   +SGG +++  +G    ++M V    +LLDEPT G+D      I   +  LA  G  
Sbjct: 393 LIMNLSGGNQQKAILGRWLSEDMKV----ILLDEPTRGIDVGAKHEIYNVIYELAAQGVA 448

Query: 290 VITTIHQPSSRLYRMF---DKVVVLSEG 314
           V+      SS L  +    D++VV+ EG
Sbjct: 449 VLFV----SSDLPEVLGVADRIVVMREG 472

Length = 501

>gnl|CDD|221706 pfam12679, ABC2_membrane_2, ABC-2 family transporter protein

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 41/202 (20%), Positives = 67/202 (33%), Gaps = 31/202 (15%)

Query: 447 YLRIFQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLI 506
            L     L   + SGL    S          +     I     PL  A+         + 
Sbjct: 30  ALAFLPSLGDDLFSGLK---SAVELDSAFEYVSAGSGIIAFLIPLIAAVLGS----DAIA 82

Query: 507 KERSSGMYRL--------SSYYFARMVGDLPMELVLPTIFITVAY-----WMGGLKPSL- 552
            E+  G  +L        S     +++G L + L+L  I I V           L  SL 
Sbjct: 83  GEKERGTLKLLLSRPVSRSEILLGKLIGLLAVGLIL-AIAILVGVLLALAVTAALGDSLS 141

Query: 553 ---ITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGY------ 603
              +  L+  S++L   L+  SLGLL+  ++     A A A     V  +  G       
Sbjct: 142 LGDLLLLVLASVLLLLALLFLSLGLLISTVLRSTATAAAAALGLFFVLSILSGILLAGIL 201

Query: 604 YIQHMSPFIAWLKYISFSHYCY 625
            ++ +  F+ +L   S  +   
Sbjct: 202 KLEELLDFLLFLNPTSPYNTLL 223

This family is related to the ABC-2 membrane transporter family. Length = 263

>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA

 Score = 39.9 bits (94), Expect = 0.003
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 5/62 (8%)

Query: 239 SGGERKRVSIGQEMLVNPSC----LLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
           SGGE +R+ + +E L   S      +LDEPT+GL     ++++  L+ L   G TV+   
Sbjct: 171 SGGEAQRIKLAKE-LSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIE 229

Query: 295 HQ 296
           H 
Sbjct: 230 HN 231

Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	691
PLN03211	659	ABC transporter G-25; Provisional	100.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	100.0
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
PLN03140	1470	ABC transporter G family member; Provisional	100.0
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	100.0
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	100.0
COG0411	250	LivG ABC-type branched-chain amino acid transport	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
cd03234	226	ABCG_White The White subfamily represents ABC tran	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	100.0
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	100.0
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	100.0
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	100.0
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	100.0
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	100.0
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	100.0
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	100.0
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	100.0
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	100.0
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	100.0
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
PRK09984	262	phosphonate/organophosphate ester transporter subu	100.0
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	100.0
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	100.0
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	100.0
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	100.0
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	100.0
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	100.0
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	100.0
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	100.0
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4559	259	ABC-type hemin transport system, ATPase component	100.0
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	100.0
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	100.0
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	100.0
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	100.0
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03299	235	ABC_ModC_like Archeal protein closely related to M	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	100.0
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	100.0
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	100.0
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	100.0
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	100.0
COG1123	539	ATPase components of various ABC-type transport sy	100.0
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	100.0
COG4598	256	HisP ABC-type histidine transport system, ATPase c	100.0
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	100.0
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	100.0
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	100.0
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	100.0
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	100.0
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	100.0
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	100.0
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	100.0
COG4988	559	CydD ABC-type transport system involved in cytochr	100.0
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	100.0
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	100.0
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	100.0
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
COG4181	228	Predicted ABC-type transport system involved in ly	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	100.0
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	100.0
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	100.0
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	100.0
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	100.0
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	100.0
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	100.0
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	100.0
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	100.0
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	100.0
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	100.0
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	100.0
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
PRK10261	623	glutathione transporter ATP-binding protein; Provi	100.0
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	100.0
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	100.0
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	100.0
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	100.0
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	100.0
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	100.0
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	100.0
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	100.0
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
PRK03695	248	vitamin B12-transporter ATPase; Provisional	100.0
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	100.0
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	100.0
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	100.0
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	100.0
COG4987	573	CydC ABC-type transport system involved in cytochr	100.0
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	100.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	100.0
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	100.0
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	100.0
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	100.0
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	100.0
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	100.0
PRK13546	264	teichoic acids export protein ATP-binding subunit;	100.0
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	100.0
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	100.0
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	100.0
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	100.0
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	100.0
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	100.0
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	100.0
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	100.0
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	100.0
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03215	182	ABC_Carb_Monos_II This family represents domain II	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	100.0
cd03246	173	ABCC_Protease_Secretion This family represents the	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	100.0
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	100.0
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	100.0
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	100.0
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	100.0
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	100.0
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	100.0
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	100.0
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	100.0
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	100.0
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	100.0
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	100.0
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	100.0
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	100.0
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	100.0
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	100.0
COG3845	501	ABC-type uncharacterized transport systems, ATPase	100.0
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	100.0
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	100.0
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
cd03216	163	ABC_Carb_Monos_I This family represents the domain	100.0
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	100.0
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	100.0
COG4619	223	ABC-type uncharacterized transport system, ATPase	100.0
PRK10535	648	macrolide transporter ATP-binding /permease protei	100.0
COG4172	534	ABC-type uncharacterized transport system, duplica	100.0
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	100.0
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	100.0
PRK10522	547	multidrug transporter membrane component/ATP-bindi	100.0
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
PTZ00243	1560	ABC transporter; Provisional	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK10938	490	putative molybdenum transport ATP-binding protein	100.0
COG4674	249	Uncharacterized ABC-type transport system, ATPase	100.0
COG4586	325	ABC-type uncharacterized transport system, ATPase	100.0
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	100.0
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	100.0
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	100.0
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	100.0
PRK15064	530	ABC transporter ATP-binding protein; Provisional	100.0
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	100.0
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	100.0
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	100.0
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	100.0
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	100.0
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	100.0
PLN03232	1495	ABC transporter C family member; Provisional	100.0
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	100.0
PLN03073	718	ABC transporter F family; Provisional	100.0
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	100.0
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
PLN03130	1622	ABC transporter C family member; Provisional	100.0
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	100.0
PRK11147	635	ABC transporter ATPase component; Reviewed	100.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	100.0
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	100.0
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	100.0
PRK13409	590	putative ATPase RIL; Provisional	100.0
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	100.0
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	100.0
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.98
COG0488	530	Uup ATPase components of ABC transporters with dup	99.98
PLN03073	718	ABC transporter F family; Provisional	99.97
PTZ00243	1560	ABC transporter; Provisional	99.97
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.97
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.97
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.97
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.97
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.97
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.97
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.96
COG0488	530	Uup ATPase components of ABC transporters with dup	99.96
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.96
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.95
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.94
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.94
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.93
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.93
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.93
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.93
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.93
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.92
COG4178	604	ABC-type uncharacterized transport system, permeas	99.92
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.92
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.91
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.9
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.9
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.89
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.88
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.88
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.87
KOG0062	582	consensus ATPase component of ABC transporters wit	99.86
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.85
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.84
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.83
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.83
PF01061	210	ABC2_membrane: ABC-2 type transporter; InterPro: I	99.83
KOG0062	582	consensus ATPase component of ABC transporters wit	99.82
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.81
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.8
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.8
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.78
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.78
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.78
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.78
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.76
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.76
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.75
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.73
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.72
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.71
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.7
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.69
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.67
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.62
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	99.6
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.58
PRK00064	361	recF recombination protein F; Reviewed	99.48
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.45
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.44
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.4
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	99.39
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	99.39
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.37
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.36
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	99.36
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.34
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.31
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	99.29
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	99.27
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	99.24
cd01128	249	rho_factor Transcription termination factor rho is	99.24
PRK10869	553	recombination and repair protein; Provisional	99.24
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.21
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	99.19
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	99.18
PRK00409	782	recombination and DNA strand exchange inhibitor pr	99.18
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	99.18
PHA02562	562	46 endonuclease subunit; Provisional	99.17
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	99.16
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.15
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	99.12
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	99.11
PRK13695	174	putative NTPase; Provisional	99.08
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	99.08
COG3910	233	Predicted ATPase [General function prediction only	99.05
PRK15066	257	inner membrane transport permease; Provisional	99.03
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	99.01
PRK03918	880	chromosome segregation protein; Provisional	99.0
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.99
PRK13830	818	conjugal transfer protein TrbE; Provisional	98.99
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.92
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.89
PRK01156	895	chromosome segregation protein; Provisional	98.88
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.86
PRK06067	234	flagellar accessory protein FlaH; Validated	98.83
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.79
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.79
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.78
smart00382	148	AAA ATPases associated with a variety of cellular	98.76
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.76
PRK02224	880	chromosome segregation protein; Provisional	98.69
COG0842	286	ABC-type multidrug transport system, permease comp	98.68
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.67
TIGR01248	152	drrC daunorubicin resistance protein C. The model	98.58
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.58
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	98.57
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.56
PRK13891	852	conjugal transfer protein TrbE; Provisional	98.56
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.54
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.52
TIGR00611	365	recf recF protein. All proteins in this family for	98.48
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.47
PRK14079	349	recF recombination protein F; Provisional	98.4
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.37
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.36
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	98.35
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.34
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.32
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	98.32
PRK09825	176	idnK D-gluconate kinase; Provisional	98.26
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	98.21
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.14
PRK06315	442	type III secretion system ATPase; Provisional	98.13
PRK13873	811	conjugal transfer ATPase TrbE; Provisional	98.13
COG1682	263	TagG ABC-type polysaccharide/polyol phosphate expo	98.1
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.09
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.08
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	98.07
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.05
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.05
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	98.02
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.01
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.01
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.99
PF13558	90	SbcCD_C: Putative exonuclease SbcCD, C subunit; PD	97.98
PRK03846	198	adenylylsulfate kinase; Provisional	97.97
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	97.96
TIGR00767	415	rho transcription termination factor Rho. Members	97.94

>PLN03211 ABC transporter G-25; Provisional

Probab=100.00  E-value=9.5e-109  Score=956.44  Aligned_cols=604  Identities=53%  Similarity=0.926  Sum_probs=503.1

Q ss_pred             cccCccceEEEEEeEEEEEccCCCCCc------ccccC--CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHH
Q 005545           71 LRESLHPVTLKFEDVAYSINLHTSKGS------CFATS--HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTL  142 (691)
Q Consensus        71 ~~~~~~~~~l~~~~ls~~~~~~~~~~~------~~~~~--~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTL  142 (691)
                      ......++.++|.|++|+++.......      +....  .....++++++.+|+|+|+++++||++||+||||||||||
T Consensus        31 ~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTL  110 (659)
T PLN03211         31 LLSSCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTL  110 (659)
T ss_pred             hcCCCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHH
Confidence            334456899999999999975431100      00000  0112345667889999999999999999999999999999


Q ss_pred             HHHHHcCCCC-CCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 005545          143 LTALAGRLRG-KFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG  221 (691)
Q Consensus       143 L~~L~G~~~~-~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg  221 (691)
                      ||+|+|+.++ ..+|+|.+||+++....++++|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+|
T Consensus       111 L~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lg  190 (659)
T PLN03211        111 LNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELG  190 (659)
T ss_pred             HHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence            9999998753 258999999999866566789999999999999999999999887776655566677788999999999


Q ss_pred             CCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545          222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL  301 (691)
Q Consensus       222 L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i  301 (691)
                      |.+++|+++|+...++|||||||||+||++|+.+|+||+|||||+|||+.++.++++.|++++++|+|||+++|||+.++
T Consensus       191 L~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i  270 (659)
T PLN03211        191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRV  270 (659)
T ss_pred             ChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHH
Confidence            99999999999888999999999999999999999999999999999999999999999999988999999999998778


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQ  381 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (691)
                      +++||++++|++|++++.|+++++.+||+++|++||. +.|||||++|+++....... .          .+.+.....+
T Consensus       271 ~~~~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~-~~NpADf~ldv~~~~~~~~~-~----------~~~~~~~~~~  338 (659)
T PLN03211        271 YQMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSF-PMNPADFLLDLANGVCQTDG-V----------SEREKPNVKQ  338 (659)
T ss_pred             HHhhceEEEecCCcEEEECCHHHHHHHHHHCCCCCCC-CCCHHHHHHHHcCccccCCC-c----------cccccchHHH
Confidence            8999999999999999999999999999999999999 89999999999874221100 0          0001111223


Q ss_pred             HHHHHHHhhcchhHHHHhhhhc--CCCCC-----CCCCCCCCCCCCccCcHHHHHHHHHHHHHHHhhcchhHHHHHHHHH
Q 005545          382 SLISSYKKNLHPALMAEIQQNV--GDPIA-----SGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIFQVL  454 (691)
Q Consensus       382 ~l~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i  454 (691)
                      .+.+.|++...+...+.+....  .....     ..+..+. ....+.++||+|+.+|++|+++++|++.+...|+++.+
T Consensus       339 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i  417 (659)
T PLN03211        339 SLVASYNTLLAPKVKAAIEMSHFPQANARFVGSASTKEHRS-SDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVI  417 (659)
T ss_pred             HHHHHHHhhccHHHHHHHhhhhhhcchhhhhhccccccccc-CCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            4455555433322222211100  00000     0000000 11235678999999999999999999998889999999


Q ss_pred             HHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHH
Q 005545          455 SVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVL  534 (691)
Q Consensus       455 ~~all~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~  534 (691)
                      ++|+++|++||+++.+++++|.|++||+++++++.+++.+++.|+.||++|+||+.+|+|++++|++||+++|+|+.++.
T Consensus       418 ~~~ll~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~  497 (659)
T PLN03211        418 AAALLAGLMWWHSDFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELIL  497 (659)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998889999999999999999988888999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhccccCCcchhhh
Q 005545          535 PTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQHMSPFIAW  614 (691)
Q Consensus       535 ~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~ip~~~~W  614 (691)
                      +++|++|+|||+||++++.+|++|++++++..++++++|+++|+++||..+|+.+++++++++++||||++++||+||+|
T Consensus       498 ~~if~~i~Y~m~Gl~~~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W  577 (659)
T PLN03211        498 PTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAW  577 (659)
T ss_pred             HHHHHhheeEcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhCHHHHHHHHHHHHHhCCCc----eeccCCC-----ccccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHH
Q 005545          615 LKYISFSHYCYKLLVGVQYSANE----VYACGSG-----LHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTL  685 (691)
Q Consensus       615 l~yiSp~~Y~~~~l~~nef~~~~----~~~C~~~-----~~c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L  685 (691)
                      ++|+||++||||+++.|||++..    .++|...     ..|.....   ..++..+.|.|+++|++++++||+++|++|
T Consensus       578 ~~ylS~~~y~~eal~~nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L  654 (659)
T PLN03211        578 IKYISTTFYSYRLLINVQYGEGKRISSLLGCSLPHGSDRASCKFVEE---DVAGQISPATSVSVLIFMFVGYRLLAYLAL  654 (659)
T ss_pred             HHHhCHHHHHHHHHHHHhcCCccccccccCCCCcccCCCCCCccchh---hhhcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999997643    2578532     23432211   122334689999999999999999999999


Q ss_pred             HhcCC
Q 005545          686 RMRQP  690 (691)
Q Consensus       686 ~~~~~  690 (691)
                      +++++
T Consensus       655 ~~~~~  659 (659)
T PLN03211        655 RRIKH  659 (659)
T ss_pred             HhccC
Confidence            98764

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.2e-107  Score=935.07  Aligned_cols=577  Identities=46%  Similarity=0.783  Sum_probs=503.5

Q ss_pred             ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--
Q 005545           75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--  152 (691)
Q Consensus        75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--  152 (691)
                      ..++.++|+|++++.+.+..                ..+++|+|||++++|||++||||||||||||||++|+|+..+  
T Consensus        21 ~~~~~~~~~~~~~~~~~~~~----------------~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~   84 (613)
T KOG0061|consen   21 LEPVKLSFRNLTLSSKEKSK----------------KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGL   84 (613)
T ss_pred             cccceeEEEEEEEEecCCCC----------------ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCC
Confidence            35688999999999974321                357899999999999999999999999999999999999853  


Q ss_pred             CCceEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          153 KFSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      ..+|+|++||++... .+++.+|||.|||.++|++||+|+|.|+|.+|+|+..++++++++|+++++++||.+|+|+++|
T Consensus        85 ~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig  164 (613)
T KOG0061|consen   85 KLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIG  164 (613)
T ss_pred             cceEEEEECCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceec
Confidence            579999999977654 6788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      +...||+||||||||+||.+|++||+||+|||||||||+.++.+++++|+++|++|+|||+|+|||+.+++++||++++|
T Consensus       165 ~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lL  244 (613)
T KOG0061|consen  165 NPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLL  244 (613)
T ss_pred             CCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhh
Confidence            98889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhhc
Q 005545          312 SEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNL  391 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  391 (691)
                      ++|+++|+|+++++.+||++.|++||. +.|||||++|+++.. .+ . ...           ............++.  
T Consensus       245 s~G~~vy~G~~~~~~~ff~~~G~~~P~-~~Npadf~l~l~s~~-~~-~-~~~-----------~~~~~~~~~~~~~~~--  307 (613)
T KOG0061|consen  245 SEGEVVYSGSPRELLEFFSSLGFPCPE-LENPADFLLDLLSVD-SG-T-REL-----------EEAVRIAKLINKFSQ--  307 (613)
T ss_pred             cCCcEEEecCHHHHHHHHHhCCCCCCC-cCChHHHHHHHHccC-CC-c-hhH-----------HhHHHHHHHhhhccc--
Confidence            999999999999999999999999999 899999999998853 01 0 000           000011111111110  


Q ss_pred             chhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC-
Q 005545          392 HPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR-  469 (691)
Q Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~-  469 (691)
                      .....+.........    ....+ ......++||.|+++|++|.+++ +|++.+...|+++.+++|+++|++||+.+. 
T Consensus       308 ~~~~~~~~~~~~~~~----~~~~~-~~~~~~~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~  382 (613)
T KOG0061|consen  308 TDNLKKTLEALEKSL----STSKK-VEIGTSPSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGND  382 (613)
T ss_pred             cchhhhhHHHHhhhc----ccccc-cccccCCcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence            000000000000000    00000 01111789999999999999998 688889999999999999999999999977 


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCc
Q 005545          470 -SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGL  548 (691)
Q Consensus       470 -~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl  548 (691)
                       .++++|.|++||++.++.+.+++++++.|++||++|.||+.+|+|+.++||+|++++++|+.++.|++|++|+|||+|+
T Consensus       383 ~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl  462 (613)
T KOG0061|consen  383 AKGIQNRLGLFFFILSFMTFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGL  462 (613)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccC
Confidence             5778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHH
Q 005545          549 KPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYK  626 (691)
Q Consensus       549 ~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~  626 (691)
                      +++..+|++|++++++..++++++|+++|+++||...|+.++++++++|++|+||+++  +||.||+|++|+||++|+||
T Consensus       463 ~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e  542 (613)
T KOG0061|consen  463 NPGLSRFLYFLLIILLSSLVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFE  542 (613)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998  99999999999999999999


Q ss_pred             HHHHHHhCCCceeccCCC--ccccccccccceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          627 LLVGVQYSANEVYACGSG--LHCSVMEFPAIKYLGV--DNKLIDVAALTMMLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       627 ~l~~nef~~~~~~~C~~~--~~c~~~~~~~~~~~g~--~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~  690 (691)
                      +++.|||.+ ....|...  ..|...+...++..++  .+.|.|++++++++++||+++|++|++..|
T Consensus       543 ~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~  609 (613)
T KOG0061|consen  543 ALLINQFSG-GSSRCFLSGNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVK  609 (613)
T ss_pred             HHHHHHhhc-cccccccCcCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999987 46778654  3565555566777776  579999999999999999999999998654

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=100.00  E-value=9.1e-103  Score=905.04  Aligned_cols=563  Identities=34%  Similarity=0.599  Sum_probs=486.2

Q ss_pred             cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--CceEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 005545          111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--FSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLT  187 (691)
Q Consensus       111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~--~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lT  187 (691)
                      +++.+|+|+|+++++||++||+|||||||||||++|+|+.++.  .+|+|.+||++++. ..++.+|||+|+|.+++.+|
T Consensus        36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT  115 (617)
T TIGR00955        36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT  115 (617)
T ss_pred             CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence            3567999999999999999999999999999999999987432  48999999999864 56788999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC-CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP-LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS  266 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts  266 (691)
                      |+|||.|++.++.+...++++++++++++++.+||.+++|+++|++ ..++|||||||||+||+||+.+|++|+|||||+
T Consensus       116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts  195 (617)
T TIGR00955       116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS  195 (617)
T ss_pred             HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence            9999999998888877777888889999999999999999999975 368999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHH
Q 005545          267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADF  346 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~  346 (691)
                      |||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++|+++|.|+++++.+||+++|++||. +.|||||
T Consensus       196 gLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g~~~p~-~~n~ad~  274 (617)
T TIGR00955       196 GLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLGHPCPE-NYNPADF  274 (617)
T ss_pred             chhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcCCCCCC-CCChHHH
Confidence            999999999999999999889999999999988899999999999999999999999999999999999999 8999999


Q ss_pred             HHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcH
Q 005545          347 LLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKN-LHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASW  425 (691)
Q Consensus       347 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  425 (691)
                      ++|+++....+               +.+.....+.+.+.|++. ...+..+.......................+..+|
T Consensus       275 ~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (617)
T TIGR00955       275 YVQVLAVIPGS---------------ENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNASW  339 (617)
T ss_pred             HHHHhhcCccc---------------ccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCCH
Confidence            99998642111               001111223344444432 11222221111110000000000000223567899


Q ss_pred             HHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 005545          426 WEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQER  502 (691)
Q Consensus       426 ~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR  502 (691)
                      ++|+.+|++|+++. +||+.+...|+++.+++|+++|++||+++.  +++++|.|++|++.++++|.+++.++..|+.||
T Consensus       340 ~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er  419 (617)
T TIGR00955       340 WTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAEL  419 (617)
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999986 789999999999999999999999999876  689999999999999998888888899999999


Q ss_pred             HHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          503 AMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMD  582 (691)
Q Consensus       503 ~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~  582 (691)
                      ++|.||+.+|+|++++|++|++++|+|+.++.+++|.+|+|||+|+++++..||+|++++++..++++++|+++++++|+
T Consensus       420 ~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~  499 (617)
T TIGR00955       420 PVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSS  499 (617)
T ss_pred             HHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCC---cccccccccccee
Q 005545          583 VKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSG---LHCSVMEFPAIKY  657 (691)
Q Consensus       583 ~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~---~~c~~~~~~~~~~  657 (691)
                      ..+|+.+++++++++++|+||+++  +||+||+|++|+||++|+|++++.|||.+....+|..+   ..|...+...++.
T Consensus       500 ~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~  579 (617)
T TIGR00955       500 TSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILET  579 (617)
T ss_pred             hHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHh
Confidence            999999999999999999999997  99999999999999999999999999988644578642   3587555556677


Q ss_pred             cCCC--chHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005545          658 LGVD--NKLIDVAALTMMLVGYRLLAYVTLRMRQ  689 (691)
Q Consensus       658 ~g~~--~~w~~~~iL~~~~~~~~~l~~l~L~~~~  689 (691)
                      +|++  +.|.|+++|+++.++|++++|++||+..
T Consensus       580 ~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~  613 (617)
T TIGR00955       580 LSFRNADLYLDLIGLVILIFFFRLLAYFALRIRI  613 (617)
T ss_pred             cCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7764  6899999999999999999999998743

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=1.1e-98  Score=931.71  Aligned_cols=602  Identities=26%  Similarity=0.406  Sum_probs=492.3

Q ss_pred             cceEEEEEeEEEEEccCCCC--Ccc-------cc-cCC-CCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHH
Q 005545           76 HPVTLKFEDVAYSINLHTSK--GSC-------FA-TSH-GEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLT  144 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~--~~~-------~~-~~~-~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~  144 (691)
                      +.+.++|+||+++.......  +..       .. ... ...+++..++.+|+|+|+.+++||+++|+||||||||||||
T Consensus        26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk  105 (1394)
T TIGR00956        26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK  105 (1394)
T ss_pred             CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence            46789999999988432211  000       00 000 00122334577999999999999999999999999999999


Q ss_pred             HHHcCCC---CCCceEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC----CCCHHHHHHH-H
Q 005545          145 ALAGRLR---GKFSGKITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK----KLTREEKIEQ-A  213 (691)
Q Consensus       145 ~L~G~~~---~~~~G~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~----~~~~~~~~~~-v  213 (691)
                      +|+|+..   .+.+|+|.+||+++.+   ..++.++||+|+|.+++.+||+|||.|++.++.|.    ..+++++.++ +
T Consensus       106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~  185 (1394)
T TIGR00956       106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA  185 (1394)
T ss_pred             HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence            9999863   3579999999998743   34567999999999999999999999998877653    2344554444 4


Q ss_pred             HHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEE
Q 005545          214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVIT  292 (691)
Q Consensus       214 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~  292 (691)
                      +++++.+||.+++|+++|+..+++|||||||||+||++|+.+|+|++|||||+|||+.++.++++.|++++++ |+|||+
T Consensus       186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii  265 (1394)
T TIGR00956       186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV  265 (1394)
T ss_pred             HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999974 999999


Q ss_pred             EeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCc
Q 005545          293 TIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEH  372 (691)
Q Consensus       293 ~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~  372 (691)
                      ++|||+.+++++||+|++|++|+++|+|+++++.+||+++||+||+ +.|||||++|+++...   +....       ..
T Consensus       266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~-~~n~aDfl~~~~~~~~---~~~~~-------~~  334 (1394)
T TIGR00956       266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPD-RQTTADFLTSLTSPAE---RQIKP-------GY  334 (1394)
T ss_pred             EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCC-CCChHHHHHhccChhh---hhccc-------cc
Confidence            9999988899999999999999999999999999999999999999 8999999999976421   11000       00


Q ss_pred             ccchhHHHHHHHHHHHhhc-chhHHHHhhhhcCC--C----------CCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH
Q 005545          373 HDDQNATKQSLISSYKKNL-HPALMAEIQQNVGD--P----------IASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE  439 (691)
Q Consensus       373 ~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~  439 (691)
                      +.......+.+.+.|+++. .+...++++.....  .          ......+.......+..|+|+|+++|++|++++
T Consensus       335 e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~  414 (1394)
T TIGR00956       335 EKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLR  414 (1394)
T ss_pred             cccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence            0111112334555554321 12222222211000  0          000000001123467889999999999999987


Q ss_pred             -hhcchhHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCCh
Q 005545          440 -RKHESYSYLRIFQVLSVSILSGLLWWHSDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRL  516 (691)
Q Consensus       440 -~r~~~~~~~r~~~~i~~all~G~lf~~~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~  516 (691)
                       +||+.++..|+++.+++|+++|++||+++.  +++++|.|++||++++.++.++ ..+..++.||+||+||+.+|+|++
T Consensus       415 ~~Rd~~~~~~r~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~-~~i~~~~~eR~i~~re~~~~~Y~~  493 (1394)
T TIGR00956       415 MKGNPSFTLFMVFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSL-LEIASMYEARPIVEKHRKYALYHP  493 (1394)
T ss_pred             HhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCcceeeeccccccCH
Confidence             788889999999999999999999999976  6899999999999999888775 567777789999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 005545          517 SSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLV  596 (691)
Q Consensus       517 ~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~  596 (691)
                      ++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++++..+++.++++++|+++||..+|+.++++++++
T Consensus       494 ~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~  573 (1394)
T TIGR00956       494 SADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLA  573 (1394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCC--------------Cccccccc---------
Q 005545          597 FLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGS--------------GLHCSVME---------  651 (691)
Q Consensus       597 ~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~--------------~~~c~~~~---------  651 (691)
                      +++|+||+++  +||+||+|++|+||++|+||+++.|||++. .++|..              +..|...+         
T Consensus       574 ~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~-~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~  652 (1394)
T TIGR00956       574 LSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGR-RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVD  652 (1394)
T ss_pred             HHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCC-cccccccccCCCCCCCCCccCccccCCCCcCCccccc
Confidence            9999999998  999999999999999999999999999986 689951              34575211         


Q ss_pred             -cccce-ecCC--CchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          652 -FPAIK-YLGV--DNKLIDVAALTMMLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       652 -~~~~~-~~g~--~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~  690 (691)
                       ...++ .+++  ++.|+|+++|++++++|++++++++.++++
T Consensus       653 G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~~  695 (1394)
T TIGR00956       653 GDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNKG  695 (1394)
T ss_pred             HHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence             11122 3444  579999999999999999999999999774

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.9e-97  Score=917.98  Aligned_cols=583  Identities=27%  Similarity=0.452  Sum_probs=488.4

Q ss_pred             ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C
Q 005545           75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K  153 (691)
Q Consensus        75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~  153 (691)
                      ..|+.+.|+||+|+++.+....        ..+.+.+++.+|+|||++++|||++||+||||||||||||+|+|+..+ +
T Consensus       863 ~~~~~~~~~~v~y~v~~~~~~~--------~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~  934 (1470)
T PLN03140        863 FTPLAMSFDDVNYFVDMPAEMK--------EQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY  934 (1470)
T ss_pred             CCcceEEEEEEEEEEccCcccc--------ccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCc
Confidence            3567899999999998543210        011123446799999999999999999999999999999999998642 5


Q ss_pred             CceEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          154 FSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       154 ~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      .+|+|.+||++... ..++.+|||+|+|.+++.+||+|||.|++.++++...+++++.++++++++.+||.+++|+.+|+
T Consensus       935 ~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~ 1014 (1470)
T PLN03140        935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL 1014 (1470)
T ss_pred             ccceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCC
Confidence            78999999998754 45678999999999999999999999998888776666777778899999999999999999998


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      +.+++|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+.++++.||++++|+
T Consensus      1015 ~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~ 1094 (1470)
T PLN03140       1015 PGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMK 1094 (1470)
T ss_pred             CCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEc
Confidence            77789999999999999999999999999999999999999999999999998899999999999877889999999999


Q ss_pred             C-CeEEEecCH----hHHHHHhhhc-CCC-CCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHH
Q 005545          313 E-GSPIYSGRA----AQVMDYFGSI-GYV-PGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLIS  385 (691)
Q Consensus       313 ~-G~iv~~G~~----~~~~~~f~~~-g~~-~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  385 (691)
                      + |+++|+|+.    +++.+||+++ |++ ||+ +.|||||++|+++...   ...                 ....+.+
T Consensus      1095 ~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~-~~NPAd~~l~v~~~~~---~~~-----------------~~~d~~~ 1153 (1470)
T PLN03140       1095 RGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKE-KYNPATWMLEVSSLAA---EVK-----------------LGIDFAE 1153 (1470)
T ss_pred             CCCEEEEECCcccccccHHHHHHhcCCCCCCCC-CCCchhhhhhhhcccc---ccc-----------------ccchHHH
Confidence            6 899999996    6899999998 664 787 8999999999876311   000                 0012333


Q ss_pred             HHHhhc-chhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHH
Q 005545          386 SYKKNL-HPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLL  463 (691)
Q Consensus       386 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~l  463 (691)
                      .|+++. +....+.+....... ...+..  ....+|++|+|+|+.+|++|+++. ||+|.+...|+++.+++|+++|++
T Consensus      1154 ~~~~s~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~ 1230 (1470)
T PLN03140       1154 HYKSSSLYQRNKALVKELSTPP-PGASDL--YFATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTI 1230 (1470)
T ss_pred             HHhccHHHHHHHHHHHHhccCC-CCcccc--ccCccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence            443321 122222222111100 000000  013467899999999999999986 899999999999999999999999


Q ss_pred             hhCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHH
Q 005545          464 WWHSDR-----SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIF  538 (691)
Q Consensus       464 f~~~~~-----~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if  538 (691)
                      ||+++.     .+++++.|++|+++++.++..+...++.|..||++|+|||++|+|++++|++|++++|+|+.++.+++|
T Consensus      1231 f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if 1310 (1470)
T PLN03140       1231 FWKVGTKRSNANDLTMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYY 1310 (1470)
T ss_pred             hhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999875     367789999999999988877777788999999999999999999999999999999999999999999


Q ss_pred             hhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhh
Q 005545          539 ITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLK  616 (691)
Q Consensus       539 ~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~  616 (691)
                      .+|+|||+||++++..||+|+++++++.++++++|+++++++|+.++|+.++++++.++++|+||+++  +||+||+|++
T Consensus      1311 ~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~ 1390 (1470)
T PLN03140       1311 TLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYY 1390 (1470)
T ss_pred             HHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998  9999999999


Q ss_pred             hhCHHHHHHHHHHHHHhCCCceeccCCCc-cc-cccccccceecCC--CchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          617 YISFSHYCYKLLVGVQYSANEVYACGSGL-HC-SVMEFPAIKYLGV--DNKLIDVAALTMMLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       617 yiSp~~Y~~~~l~~nef~~~~~~~C~~~~-~c-~~~~~~~~~~~g~--~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~  690 (691)
                      |+||++|++++++.|||++. ...|...+ .. ...+....+++|+  ++.|++++++++++++|++++++++|+++.
T Consensus      1391 ~isp~~y~~~~l~~~~f~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~ 1467 (1470)
T PLN03140       1391 WICPVAWTVYGLIVSQYGDV-EDTIKVPGGAPDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNF 1467 (1470)
T ss_pred             HcCHHHHHHhhhHHHHhCCC-CCcccCCCCCCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999875 44443110 00 0001112456776  468999999999999999999999998764

>PLN03140 ABC transporter G family member; Provisional

Probab=100.00  E-value=1.2e-96  Score=911.06  Aligned_cols=601  Identities=22%  Similarity=0.380  Sum_probs=485.2

Q ss_pred             ccceEEEEEeEEEEEccCCCCCcc---c----c---c---CCC-CCCccccccceeeceEEEEeCCeEEEEEcCCCCcHH
Q 005545           75 LHPVTLKFEDVAYSINLHTSKGSC---F----A---T---SHG-EPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKT  140 (691)
Q Consensus        75 ~~~~~l~~~~ls~~~~~~~~~~~~---~----~---~---~~~-~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKS  140 (691)
                      .+.+.++|+||++......+....   .    .   .   ..+ ...|+ .++.||+|+|+.++|||+++|+||||||||
T Consensus       127 ~~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k~-~~~~IL~~vs~~i~~Ge~~~llGpnGSGKS  205 (1470)
T PLN03140        127 LPTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAKK-TKLTILKDASGIIKPSRMTLLLGPPSSGKT  205 (1470)
T ss_pred             CCCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCCC-ccceeccCCeEEEeCCeEEEEEcCCCCCHH
Confidence            345789999999987632221100   0    0   0   001 01222 357899999999999999999999999999


Q ss_pred             HHHHHHHcCCCC--CCceEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------CCCHHHH-
Q 005545          141 TLLTALAGRLRG--KFSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-------KLTREEK-  209 (691)
Q Consensus       141 TLL~~L~G~~~~--~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------~~~~~~~-  209 (691)
                      ||||+|+|++++  ..+|+|.+||+++.+ ..++.++||+|+|.+++.+||+|||.|++.++.+.       ..+++++ 
T Consensus       206 TLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~  285 (1470)
T PLN03140        206 TLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKD  285 (1470)
T ss_pred             HHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHh
Confidence            999999998742  138999999998854 34678999999999999999999999998765321       1112221 


Q ss_pred             -----------------------HHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545          210 -----------------------IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS  266 (691)
Q Consensus       210 -----------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts  266 (691)
                                             ...++++++.+||++++||.+|+..+++|||||||||+||++|+.+|++|||||||+
T Consensus       286 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTs  365 (1470)
T PLN03140        286 AGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEIST  365 (1470)
T ss_pred             ccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCc
Confidence                                   123578999999999999999999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCChHH
Q 005545          267 GLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPAD  345 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~npad  345 (691)
                      |||+.++.++++.|+++++ .|+|+|+++|||..+++++||+|++|++|+++|+|+++++.+||+++||+||+ +.||||
T Consensus       366 GLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~-~~n~AD  444 (1470)
T PLN03140        366 GLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPE-RKGTAD  444 (1470)
T ss_pred             CccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCC-CCChHH
Confidence            9999999999999999987 58999999999988899999999999999999999999999999999999999 899999


Q ss_pred             HHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhhc-chhHHHHhhhhcCCCCCCCCCCCCCCCCCccCc
Q 005545          346 FLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNL-HPALMAEIQQNVGDPIASGKSSRKNCDNEWTAS  424 (691)
Q Consensus       346 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  424 (691)
                      |++|+++.....  .    .+... .... .....+.+.++|++.. ...+.+++....+...   ..+.......|..+
T Consensus       445 Fl~~v~s~~~~~--~----~~~~~-~~p~-~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~---~~~~~~~~~~y~~s  513 (1470)
T PLN03140        445 FLQEVTSKKDQE--Q----YWADR-NKPY-RYISVSEFAERFKSFHVGMQLENELSVPFDKSQ---SHKAALVFSKYSVP  513 (1470)
T ss_pred             HHHHhcCchhhh--h----hhhcc-CCcc-ccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhh---cccccccCCCCcCC
Confidence            999998741110  0    00000 0000 0012345666776532 2233333322111000   00011123468899


Q ss_pred             HHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC-----chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          425 WWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR-----SHIQDQVGLLFFFSIFWGFFPLNNAIFVF  498 (691)
Q Consensus       425 ~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~-----~~~~~r~g~lff~~~~~~~~~~~~~i~~f  498 (691)
                      ++.|++.|++|+++. +||+..+..|+++.+++|+++|++||+++.     .+.+.+.|++||++++.++.+ +..+..+
T Consensus       514 ~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~-~~~l~~~  592 (1470)
T PLN03140        514 KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNG-FAELALM  592 (1470)
T ss_pred             HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            999999999999987 688888899999999999999999999853     345778899999988887655 5778899


Q ss_pred             HHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          499 PQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGA  578 (691)
Q Consensus       499 ~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a  578 (691)
                      +.||+||+|||++++|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++++++++
T Consensus       593 ~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a  672 (1470)
T PLN03140        593 IQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIAS  672 (1470)
T ss_pred             HhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceec-cCCCccccccccccc
Q 005545          579 IIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYA-CGSGLHCSVMEFPAI  655 (691)
Q Consensus       579 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~-C~~~~~c~~~~~~~~  655 (691)
                      ++|+..+|+.+++++++++++|+||+|+  +||+||+|++|+||++|||+|++.|||.+. .+. |.....+...+...+
T Consensus       673 ~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~-~~~~~~~~~~~~~~G~~~L  751 (1470)
T PLN03140        673 VCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP-RWMNKMASDNSTRLGTAVL  751 (1470)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCc-cccCcccCCCCcccHHHHH
Confidence            9999999999999999999999999998  999999999999999999999999999775 332 210011122233345


Q ss_pred             eecCCC----chHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          656 KYLGVD----NKLIDVAALTMMLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       656 ~~~g~~----~~w~~~~iL~~~~~~~~~l~~l~L~~~~~  690 (691)
                      +.+|+.    ..|+++++|++++++|++++|++|+++++
T Consensus       752 ~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~~  790 (1470)
T PLN03140        752 NIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLNP  790 (1470)
T ss_pred             HhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            666753    35999999999999999999999998763

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=100.00  E-value=2.5e-95  Score=901.79  Aligned_cols=569  Identities=27%  Similarity=0.443  Sum_probs=476.4

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCc
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFS  155 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~  155 (691)
                      ..|+|+||+|+++.+.                 +++.+|+|||+++++||++||+||||||||||||+|+|+.++  +.+
T Consensus       758 ~~l~~~nl~~~~~~~~-----------------~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~  820 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKK-----------------EKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITG  820 (1394)
T ss_pred             ceEEEEeeEEEecCCC-----------------CCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcce
Confidence            4689999999986321                 135699999999999999999999999999999999998742  567


Q ss_pred             eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      |+|.+||+++...+++.+|||+|++.+++.+||+|||.|++.++.|...+++++.++++++++.+||.+++|+.+|+.. 
T Consensus       821 G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~-  899 (1394)
T TIGR00956       821 GDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPG-  899 (1394)
T ss_pred             eEEEECCEECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCC-
Confidence            9999999998766788999999999999999999999999888877666777777889999999999999999998543 


Q ss_pred             cccCHHHHHHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          236 RGISGGERKRVSIGQEMLVNPS-CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~-iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      ++|||||||||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++|
T Consensus       900 ~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~G  979 (1394)
T TIGR00956       900 EGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG  979 (1394)
T ss_pred             CCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCC
Confidence            4899999999999999999997 999999999999999999999999999889999999999987778899999999997


Q ss_pred             -eEEEecCH----hHHHHHhhhcCC-CCCCCCCChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHH
Q 005545          315 -SPIYSGRA----AQVMDYFGSIGY-VPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYK  388 (691)
Q Consensus       315 -~iv~~G~~----~~~~~~f~~~g~-~~~~~~~npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  388 (691)
                       +++|.|++    +++.+||++.|+ +||+ +.|||||++|+++.....   ..                 .+.+.+.|+
T Consensus       980 G~iv~~G~~~~~~~~~~~yf~~~G~~~~p~-~~NpAd~~ldvi~~~~~~---~~-----------------~~~~~~~~~ 1038 (1394)
T TIGR00956       980 GQTVYFGDLGENSHTIINYFEKHGAPKCPE-DANPAEWMLEVIGAAPGA---HA-----------------NQDYHEVWR 1038 (1394)
T ss_pred             CEEEEECCcccccchHHHHHHhcCCCCCCC-CCCHHHHHHHHhhccccc---ch-----------------hccHHHHHh
Confidence             99999997    678999999996 8998 899999999997641111   00                 011223333


Q ss_pred             hh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCCccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhC
Q 005545          389 KN-LHPALMAEIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWH  466 (691)
Q Consensus       389 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~  466 (691)
                      .+ ......++++...................++++|||+|+++|++|++++ ||++.+...|+++.+++|+++|++||+
T Consensus      1039 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~ 1118 (1394)
T TIGR00956      1039 NSSEYQAVKNELDRLEAELSKAEDDNDPDALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFK 1118 (1394)
T ss_pred             cCHHHHHHHHHHHHhhcccccCccccccccccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            21 1111122222111100000000000012467899999999999999986 899999999999999999999999999


Q ss_pred             CCC--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-HHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 005545          467 SDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERAML-IKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAY  543 (691)
Q Consensus       467 ~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~v~-~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y  543 (691)
                      ++.  .++|+|+|++|+++++..+. +...++.|+.||.+| +||+.+|+|++++|++|++++|+|+.++.+++|++|+|
T Consensus      1119 ~~~~~~~i~~~~g~~f~~~~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y 1197 (1394)
T TIGR00956      1119 VGTSLQGLQNQMFAVFMATVLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWY 1197 (1394)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhee
Confidence            976  68999999999988877654 456778898988886 99999999999999999999999999999999999999


Q ss_pred             cccCccccHHH-------HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhh
Q 005545          544 WMGGLKPSLIT-------FLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAW  614 (691)
Q Consensus       544 ~m~Gl~~~~~~-------F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~W  614 (691)
                      ||+||++++..       |++|++++++..++++++|+++++++|+..+|+.++++++.++++|+||+++  +||.||+|
T Consensus      1198 ~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w 1277 (1394)
T TIGR00956      1198 YPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIF 1277 (1394)
T ss_pred             ecccccCcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhH
Confidence            99999988765       9999999999999999999999999999999999999999999999999998  99999999


Q ss_pred             hhhhCHHHHHHHHHHHHHhCCCceeccCC----------Ccccc---------------------------c-cccccce
Q 005545          615 LKYISFSHYCYKLLVGVQYSANEVYACGS----------GLHCS---------------------------V-MEFPAIK  656 (691)
Q Consensus       615 l~yiSp~~Y~~~~l~~nef~~~~~~~C~~----------~~~c~---------------------------~-~~~~~~~  656 (691)
                      ++|+||++|++++++.|||.+. .++|.+          +.+|.                           . .+...++
T Consensus      1278 ~~~~sp~~y~~~~l~~~~~~~~-~~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~ 1356 (1394)
T TIGR00956      1278 MYRCSPFTYLVQALLSTGLADV-PVTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLE 1356 (1394)
T ss_pred             HHhcCHHHHHHHHHHHHHcCCC-eeecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHH
Confidence            9999999999999999999886 677754          23442                           1 1112234


Q ss_pred             ecC--CCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005545          657 YLG--VDNKLIDVAALTMMLVGYRLLAYVTLRMR  688 (691)
Q Consensus       657 ~~g--~~~~w~~~~iL~~~~~~~~~l~~l~L~~~  688 (691)
                      .++  .++.|+|+++++++++++ ++++++|++.
T Consensus      1357 ~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~l~~~ 1389 (1394)
T TIGR00956      1357 PISSKYSGRWRNFGIFIAFIFFN-IIATVFFYWL 1389 (1394)
T ss_pred             HcCCcccccccchhhhhHHHHHH-HHHHHhhheE
Confidence            344  467999999999999999 8888888664

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=3.3e-92  Score=823.78  Aligned_cols=508  Identities=31%  Similarity=0.504  Sum_probs=447.5

Q ss_pred             cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEEEECCEeCC-hhccccEEEEccCCCCCCCCCH
Q 005545          111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKITYNGRQFS-SSLKRKTGFVTQDDVLYPHLTV  188 (691)
Q Consensus       111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I~~~G~~~~-~~~~~~igyv~Q~~~l~~~lTV  188 (691)
                      +++++|+|||+.++||.++||||+||||||||||+|+||.. +..+|+|++||.+.. +.++|.+|||.|+|.|.+.+||
T Consensus       802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV  881 (1391)
T KOG0065|consen  802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV  881 (1391)
T ss_pred             cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence            45789999999999999999999999999999999999964 567999999999998 6789999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC-CEEEEeCCCCC
Q 005545          189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP-SCLLLDEPTSG  267 (691)
Q Consensus       189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P-~iLlLDEPtsg  267 (691)
                      +|.|.|+|.+|+|.+.+.+++.+.|+++++.++|++++|..||.+. +|||.+||||++||.+|+.+| .||+|||||||
T Consensus       882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG  960 (1391)
T KOG0065|consen  882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQRKRLTIGVELVANPSSILFLDEPTSG  960 (1391)
T ss_pred             HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence            9999999999999999999999999999999999999999999987 999999999999999999999 89999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-CeEEEecCHh----HHHHHhhhcC-CCCCCCCC
Q 005545          268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-GSPIYSGRAA----QVMDYFGSIG-YVPGFNLL  341 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-G~iv~~G~~~----~~~~~f~~~g-~~~~~~~~  341 (691)
                      ||+.++..|++.+|+++++|+|||||+|||+.++++.||++++|++ |+.||.|+..    .+++||+++| .+|+. ..
T Consensus       961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~YFes~~~~~~~~-~~ 1039 (1391)
T KOG0065|consen  961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIEYFESIGGVKCIS-DE 1039 (1391)
T ss_pred             ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHHHHHhcCCccCCC-CC
Confidence            9999999999999999999999999999999999999999999987 8999999864    4778999987 67887 56


Q ss_pred             ChHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCC
Q 005545          342 NPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKN-LHPALMAEIQQNVGDPIASGKSSRKNCDNE  420 (691)
Q Consensus       342 npad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (691)
                      |||||++|++......  .                  ....+.+.|+++ .++..++++.........  .........+
T Consensus      1040 NPA~~mLevi~~~~~~--~------------------~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~--~~~~~~~~~~ 1097 (1391)
T KOG0065|consen 1040 NPAEWMLEVIGAGAEA--S------------------LSVDFAEIWKNSEEYKRNKELVKELSQPPPG--FSTDLEFKTR 1097 (1391)
T ss_pred             ChHHHHHhhccccccc--c------------------cCccHHHHHhccHHHHHHHHHHHHHhcCCcc--CCcccccccc
Confidence            9999999997641111  0                  011234445542 233344444433321111  0111113456


Q ss_pred             ccCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCCC--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          421 WTASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSDR--SHIQDQVGLLFFFSIFWGFFPLNNAIFV  497 (691)
Q Consensus       421 ~~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~~--~~~~~r~g~lff~~~~~~~~~~~~~i~~  497 (691)
                      |++|+|.|++.+++|++.. ||+|.+..+|++..++.|+++|+.||+.+.  .++||.+|++|+.+++.+....-.....
T Consensus      1098 fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~ 1177 (1391)
T KOG0065|consen 1098 FAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQQPA 1177 (1391)
T ss_pred             cchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Confidence            8999999999999999875 899999999999999999999999999987  7999999999998887643222123456


Q ss_pred             HHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          498 FPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLG  577 (691)
Q Consensus       498 f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~  577 (691)
                      +..||.+++||+++|+|++.+|++|++++|+|+.++++++|.+++|+|+|+..++.+|+.|++.+++..++.+.+|+++.
T Consensus      1178 v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~ 1257 (1391)
T KOG0065|consen 1178 VATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLV 1257 (1391)
T ss_pred             HhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCC
Q 005545          578 AIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGS  643 (691)
Q Consensus       578 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~  643 (691)
                      +++||.++|..+++.+..++.+|+|++++  .||.||+|++|+||+.|..++++..++++. ...|..
T Consensus      1258 s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~-~v~c~~ 1324 (1391)
T KOG0065|consen 1258 SLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDV-EVTCED 1324 (1391)
T ss_pred             HhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCC-ceeeec
Confidence            99999999999999999999999999998  999999999999999999999999999975 567864

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-86  Score=776.48  Aligned_cols=565  Identities=29%  Similarity=0.510  Sum_probs=477.6

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEECCEeCChh-ccccEEEEccCCCCCCCCCH
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSGKITYNGRQFSSS-LKRKTGFVTQDDVLYPHLTV  188 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G~I~~~G~~~~~~-~~~~igyv~Q~~~l~~~lTV  188 (691)
                      ...+|+|+|+.++|||++.++||+||||||||++|+|.++.  ...|+|.+||++.++. .++.++|+.|+|.|+|+|||
T Consensus       127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV  206 (1391)
T KOG0065|consen  127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV  206 (1391)
T ss_pred             cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence            45799999999999999999999999999999999997642  2368999999998763 36789999999999999999


Q ss_pred             HHHHHHHHhhcCCCC----CCHHHHHH-HHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005545          189 LETLSYAALLRLPKK----LTREEKIE-QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDE  263 (691)
Q Consensus       189 ~E~l~~~~~~~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE  263 (691)
                      +|+|.|+++++.+..    .++.++.+ ..+.+++.+||++|+||+||+..+||+||||||||+||..++.+++++++||
T Consensus       207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De  286 (1391)
T KOG0065|consen  207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE  286 (1391)
T ss_pred             eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence            999999999988732    33344333 5678999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhhcCCCCCCCCCC
Q 005545          264 PTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLN  342 (691)
Q Consensus       264 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~~~~~~~~n  342 (691)
                      +|+|||+.++.++++.||++++ .+.|++++.|||+++++++||+|++|++|+++|+||.+++++||+++||.||+ +.+
T Consensus       287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~-r~~  365 (1391)
T KOG0065|consen  287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPP-RKG  365 (1391)
T ss_pred             ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCC-ccC
Confidence            9999999999999999999998 48999999999999999999999999999999999999999999999999999 899


Q ss_pred             hHHHHHHhhcCCCCCCcccchhhhccccCcccchhHHHHHHHHHHHhh-cchhHHHHhhhhcCCCCCCCCCCCCCCCCCc
Q 005545          343 PADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKN-LHPALMAEIQQNVGDPIASGKSSRKNCDNEW  421 (691)
Q Consensus       343 pad~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (691)
                      +|||+.++++..  +..+.    +..+  ..........++.+.|.+. .+..+..+++...+...   ..++....++|
T Consensus       366 ~ADfLt~vts~k--~~~~~----~~~~--~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k---~~~~al~s~~y  434 (1391)
T KOG0065|consen  366 TADFLTEVTSKK--DQEQY----WNKR--SKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSK---KHKAALVSSKY  434 (1391)
T ss_pred             HHHHHHHhhcCc--ccccc----cccc--CCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhh---ccchhhcCCce
Confidence            999999998731  11110    0000  0001111224455555542 23344444432221110   11111145678


Q ss_pred             cCcHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCCC-C--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          422 TASWWEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHSD-R--SHIQDQVGLLFFFSIFWGFFPLNNAIFV  497 (691)
Q Consensus       422 ~~s~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~~-~--~~~~~r~g~lff~~~~~~~~~~~~~i~~  497 (691)
                      ..+.|.|++.|++|.+.. .||..++..++++.+++|+++|++|++.+ .  .+.+.|.|++||.+++.++.++ ..+..
T Consensus       435 ~v~~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~l-aEi~~  513 (1391)
T KOG0065|consen  435 SVPYWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGL-AEIAL  513 (1391)
T ss_pred             eccHHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhH-HHHHH
Confidence            999999999999999976 56667778899999999999999999987 4  5689999999999999887665 56766


Q ss_pred             HHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          498 FPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLG  577 (691)
Q Consensus       498 f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~  577 (691)
                      ..+.||||+|||...+|+++||.++.+++++|+.++..++|.+|+||++||++++++||.++++++++++++.+++++++
T Consensus       514 ~~~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia  593 (1391)
T KOG0065|consen  514 TFQRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIA  593 (1391)
T ss_pred             HHhhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCC-----------C
Q 005545          578 AIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGS-----------G  644 (691)
Q Consensus       578 a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~-----------~  644 (691)
                      +++++...|++++++.++++.+++||+|+  +||+||+|++|+||+.||||+++.|||.++ .+.|.+           +
T Consensus       594 ~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~-~~~c~p~gp~y~n~~~~~  672 (1391)
T KOG0065|consen  594 SLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGR-RWPCSPSGPAYDNISIEN  672 (1391)
T ss_pred             HhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcc-cCCCCCCCCccccccccc
Confidence            99999999999999999999999999998  999999999999999999999999999986 788972           2


Q ss_pred             ccccc-cccccceec------------CCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          645 LHCSV-MEFPAIKYL------------GVDNKLIDVAALTMMLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       645 ~~c~~-~~~~~~~~~------------g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~  690 (691)
                      ..|.. +..++.+.+            ...+.|+++++++|+.++|.++..+++-|+++
T Consensus       673 ~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p  731 (1391)
T KOG0065|consen  673 KVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKP  731 (1391)
T ss_pred             ccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCc
Confidence            35642 222222211            13468999999999999999999999988774

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-53  Score=416.96  Aligned_cols=219  Identities=34%  Similarity=0.564  Sum_probs=199.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|.                     ...+|+|||++|++||+++|+||||||||||||+|.++. .+++|+|
T Consensus         2 mi~i~~l~K~fg---------------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE-~~~~G~I   59 (240)
T COG1126           2 MIEIKNLSKSFG---------------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE-EPDSGSI   59 (240)
T ss_pred             eEEEEeeeEEeC---------------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc-CCCCceE
Confidence            588999999886                     356999999999999999999999999999999999965 5789999


Q ss_pred             EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..     .+|+++|+|||+..|||++||.||+..+...  -++.++++.++++.++|+++||.+.+|.+.   
T Consensus        60 ~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~--v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP---  134 (240)
T COG1126          60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVK--VKKLSKAEAREKALELLEKVGLADKADAYP---  134 (240)
T ss_pred             EECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHH--HcCCCHHHHHHHHHHHHHHcCchhhhhhCc---
Confidence            999987642     4788999999999999999999999987532  235688899999999999999999998765   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        .+|||||||||+|||||+.+|+++++|||||+|||....++++.+++|+++|.|+|++||++. .+.+.+|||++|++
T Consensus       135 --~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~  211 (240)
T COG1126         135 --AQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQ  211 (240)
T ss_pred             --cccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeC
Confidence              579999999999999999999999999999999999999999999999999999999999965 68899999999999


Q ss_pred             CeEEEecCHhHHHH
Q 005545          314 GSPIYSGRAAQVMD  327 (691)
Q Consensus       314 G~iv~~G~~~~~~~  327 (691)
                      |++++.|++++++.
T Consensus       212 G~iie~g~p~~~f~  225 (240)
T COG1126         212 GKIIEEGPPEEFFD  225 (240)
T ss_pred             CEEEEecCHHHHhc
Confidence            99999999998854

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.7e-51  Score=415.72  Aligned_cols=223  Identities=29%  Similarity=0.463  Sum_probs=201.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||++.|...                ..+...+|+|||++|++||+++|+|.||||||||+|++.++. .|++|+|
T Consensus         1 mI~l~~vsK~~~~~----------------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le-~PtsG~v   63 (339)
T COG1135           1 MIELENVSKTFGQT----------------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLE-RPTSGSV   63 (339)
T ss_pred             CeEEEeeeeeeccC----------------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccC-CCCCceE
Confidence            47999999998742                112356999999999999999999999999999999999865 5789999


Q ss_pred             EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      .++|+++..       ..|++||++||++.|+...||+||+.|+..+.   +.++++++++|.++++.+||++..+.+. 
T Consensus        64 ~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-  139 (339)
T COG1135          64 FVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-  139 (339)
T ss_pred             EEcCEecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-
Confidence            999988753       46789999999999999999999999997765   4678999999999999999999888765 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          .+|||||||||+|||||+.+|+|||+|||||+|||.+.+.|+++|+++.++ |.||+++||++ +.+.++||||.+
T Consensus       140 ----~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVav  214 (339)
T COG1135         140 ----AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAV  214 (339)
T ss_pred             ----hhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheE
Confidence                479999999999999999999999999999999999999999999999875 99999999996 578999999999


Q ss_pred             ecCCeEEEecCHhHHHH
Q 005545          311 LSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++++.|+..+++.
T Consensus       215 m~~G~lvE~G~v~~vF~  231 (339)
T COG1135         215 LDQGRLVEEGTVSEVFA  231 (339)
T ss_pred             eeCCEEEEeccHHHhhc
Confidence            99999999999998854

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=4.7e-50  Score=399.63  Aligned_cols=218  Identities=28%  Similarity=0.517  Sum_probs=198.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+|+|||+.|.                     .+.+++|+|++|++||+++++|||||||||+||+|.+++ .|++|+|
T Consensus         1 MI~~~nvsk~y~---------------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLi-ept~G~I   58 (309)
T COG1125           1 MIEFENVSKRYG---------------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLI-EPTSGEI   58 (309)
T ss_pred             CceeeeeehhcC---------------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhccc-CCCCceE
Confidence            478999998886                     256999999999999999999999999999999999977 4789999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--CRNSVVGG  232 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~  232 (691)
                      ++||+++..    ++|++||||-|+-.|||++||.||+.+...+.   +.++++.+++++++++.+||+.  ..++    
T Consensus        59 ~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~R----  131 (309)
T COG1125          59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYADR----  131 (309)
T ss_pred             EECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhhc----
Confidence            999999864    68999999999999999999999999876553   5678889999999999999974  4444    


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                       ++.+|||||+|||.+||||+.+|++|++|||+++|||.++.++-+.+++++++ |+|||++|||. +++++++|||.+|
T Consensus       132 -yP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm  209 (309)
T COG1125         132 -YPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVM  209 (309)
T ss_pred             -CchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEe
Confidence             45689999999999999999999999999999999999999999999999975 99999999996 5688999999999


Q ss_pred             cCCeEEEecCHhHHHH
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      ++|+++..++|++++.
T Consensus       210 ~~G~i~Q~~~P~~il~  225 (309)
T COG1125         210 DAGEIVQYDTPDEILA  225 (309)
T ss_pred             cCCeEEEeCCHHHHHh
Confidence            9999999999999954

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.6e-48  Score=412.73  Aligned_cols=225  Identities=37%  Similarity=0.593  Sum_probs=200.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .++++||++.|..                    .+.+|+||||+|++||++||+||||||||||+|+|+|++. |++|+|
T Consensus         4 ~i~~~~l~k~~~~--------------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~-p~~G~i   62 (293)
T COG1131           4 VIEVRNLTKKYGG--------------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK-PTSGEI   62 (293)
T ss_pred             eeeecceEEEeCC--------------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC-CCceEE
Confidence            4678888888861                    2569999999999999999999999999999999999874 689999


Q ss_pred             EECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          159 TYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       159 ~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      .++|.+...   ..++++||++|++.+++.+||+|+|.|.+.++...   .....++++++++.+||.+..++++     
T Consensus        63 ~i~G~~~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~-----  134 (293)
T COG1131          63 LVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKV-----  134 (293)
T ss_pred             EEcCEeCccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcch-----
Confidence            999998864   56789999999999999999999999998887432   2455678999999999998555555     


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG-RTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      ++||+|||||++||+||+++|++|||||||+||||.++.++.++|++++++| +||++|||++. ++..+||+|++|++|
T Consensus       135 ~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G  213 (293)
T COG1131         135 RTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDG  213 (293)
T ss_pred             hhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCC
Confidence            5799999999999999999999999999999999999999999999999987 89999999975 688899999999999


Q ss_pred             eEEEecCHhHHHHHhhhcC
Q 005545          315 SPIYSGRAAQVMDYFGSIG  333 (691)
Q Consensus       315 ~iv~~G~~~~~~~~f~~~g  333 (691)
                      ++++.|+++++...+....
T Consensus       214 ~~~~~g~~~~l~~~~~~~~  232 (293)
T COG1131         214 KIIAEGTPEELKEKFGGKG  232 (293)
T ss_pred             EEEEeCCHHHHHHhhccCc
Confidence            9999999999887765543

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1e-48  Score=388.48  Aligned_cols=221  Identities=33%  Similarity=0.498  Sum_probs=199.6

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...|++++|++++.                     .+.|++|||++|++||+++||||||||||||||+|.|++ .|++|
T Consensus         6 ~~~I~vr~v~~~fG---------------------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll-~P~~G   63 (263)
T COG1127           6 EPLIEVRGVTKSFG---------------------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL-RPDKG   63 (263)
T ss_pred             cceEEEeeeeeecC---------------------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC-CCCCC
Confidence            46799999999885                     357999999999999999999999999999999999988 47899


Q ss_pred             EEEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 005545          157 KITYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-RNS  228 (691)
Q Consensus       157 ~I~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~  228 (691)
                      +|+++|+++..       ..++++|++||+..||..+||+||+.|..+-  ....+++..++.+..-|+.+||... .+.
T Consensus        64 eI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre--~~~lp~~~i~~lv~~KL~~VGL~~~~~~~  141 (263)
T COG1127          64 EILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE--HTKLPESLIRELVLMKLELVGLRGAAADL  141 (263)
T ss_pred             eEEEcCcchhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHh--hccCCHHHHHHHHHHHHHhcCCChhhhhh
Confidence            99999998752       4678999999999999999999999997643  3457788888889999999999865 443


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~  307 (691)
                           ++.+|||||+||++||||++.||++|++||||+||||.++..+.+++++|.+. |.|++++|||.. .++.+|||
T Consensus       142 -----~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Dr  215 (263)
T COG1127         142 -----YPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADR  215 (263)
T ss_pred             -----CchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhce
Confidence                 45689999999999999999999999999999999999999999999999985 999999999965 68999999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|.+|+++..|+++++.+
T Consensus       216 v~~L~~gkv~~~Gt~~el~~  235 (263)
T COG1127         216 VAVLADGKVIAEGTPEELLA  235 (263)
T ss_pred             EEEEeCCEEEEeCCHHHHHh
Confidence            99999999999999999865

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.2e-48  Score=399.76  Aligned_cols=220  Identities=33%  Similarity=0.481  Sum_probs=194.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+.+||+++|+                     ++.+|+|+||++++||+++|+||||||||||||+|+|.+ +|.+|+|
T Consensus         2 ~L~~~~ls~~y~---------------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l-~p~~G~V   59 (258)
T COG1120           2 MLEVENLSFGYG---------------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLL-KPKSGEV   59 (258)
T ss_pred             eeEEEEEEEEEC---------------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccC-CCCCCEE
Confidence            589999999997                     256999999999999999999999999999999999987 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    ++.+.+|||||.......+||+|.+.++..-... .....+++++.+++.|+.+|+.+.+++.+.  
T Consensus        60 ~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~--  137 (258)
T COG1120          60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD--  137 (258)
T ss_pred             EECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc--
Confidence            999999853    5678999999999888899999999887431111 011234445589999999999999998774  


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         +|||||||||.|||||+.+|++|+||||||.||..++.+++++++++++ +|+|||+++||++ .+.++||++++|+
T Consensus       138 ---~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk  213 (258)
T COG1120         138 ---ELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLK  213 (258)
T ss_pred             ---ccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence               6999999999999999999999999999999999999999999999995 5999999999986 5789999999999


Q ss_pred             CCeEEEecCHhHHH
Q 005545          313 EGSPIYSGRAAQVM  326 (691)
Q Consensus       313 ~G~iv~~G~~~~~~  326 (691)
                      +|+++..|++++++
T Consensus       214 ~G~i~a~G~p~evl  227 (258)
T COG1120         214 DGKIVAQGTPEEVL  227 (258)
T ss_pred             CCeEEeecCcchhc
Confidence            99999999998875

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-48  Score=415.24  Aligned_cols=221  Identities=31%  Similarity=0.517  Sum_probs=201.2

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...|+++||+++|.                     ...+|+|+|++|++||+++|+||||||||||||+|+|+. .|++|
T Consensus         3 ~~~l~i~~v~k~yg---------------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe-~p~~G   60 (352)
T COG3842           3 KPALEIRNVSKSFG---------------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE-QPSSG   60 (352)
T ss_pred             CceEEEEeeeeecC---------------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCc
Confidence            35689999999886                     246999999999999999999999999999999999976 57899


Q ss_pred             EEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          157 KITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       157 ~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      +|.++|++++.  ..+|.+|+|||+..|||+|||+||+.|+.+.+  +...+++.+++++++++.++|++..++++    
T Consensus        61 ~I~l~G~~i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p----  134 (352)
T COG3842          61 EILLDGEDITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP----  134 (352)
T ss_pred             eEEECCEECCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh----
Confidence            99999999975  56889999999999999999999999997633  44566778889999999999999888766    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                       .+|||||||||+|||||+.+|++||||||.|+||..-+.++...|+++.+ .|.|.|++|||. +++..++|||.+|++
T Consensus       135 -~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~  212 (352)
T COG3842         135 -HQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMND  212 (352)
T ss_pred             -hhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccC
Confidence             47999999999999999999999999999999999999999999999987 499999999996 568899999999999


Q ss_pred             CeEEEecCHhHHHH
Q 005545          314 GSPIYSGRAAQVMD  327 (691)
Q Consensus       314 G~iv~~G~~~~~~~  327 (691)
                      |+|...|+++++..
T Consensus       213 G~I~Q~gtP~eiY~  226 (352)
T COG3842         213 GRIEQVGTPEEIYE  226 (352)
T ss_pred             CceeecCCHHHHhh
Confidence            99999999999943

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=3.5e-48  Score=410.53  Aligned_cols=219  Identities=32%  Similarity=0.503  Sum_probs=201.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     ..+|+|+|++|++||+++|+||||||||||||+|||+. .+++|+|
T Consensus         3 ~i~l~~v~K~yg~---------------------~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe-~~~~G~I   60 (338)
T COG3839           3 ELELKNVRKSFGS---------------------FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE-EPTSGEI   60 (338)
T ss_pred             EEEEeeeEEEcCC---------------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence            6899999999872                     12899999999999999999999999999999999976 5789999


Q ss_pred             EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      .++|++++.  ..+|.|++|||+..|||+|||+||+.|+.+.+   +.++++.+++++++.+.++|++..|++.     +
T Consensus        61 ~i~g~~vt~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~  132 (338)
T COG3839          61 LIDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----L  132 (338)
T ss_pred             EECCEECCCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----c
Confidence            999999975  45789999999999999999999999998765   5578888999999999999999999876     5


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +|||||||||+|||||+.+|+++|+|||+|.||+..+..+...|+++.++ |.|+|++|||. .++..++||+.+|++|+
T Consensus       133 ~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~  211 (338)
T COG3839         133 QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGR  211 (338)
T ss_pred             cCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCe
Confidence            79999999999999999999999999999999999999999999999875 89999999996 56889999999999999


Q ss_pred             EEEecCHhHHHHH
Q 005545          316 PIYSGRAAQVMDY  328 (691)
Q Consensus       316 iv~~G~~~~~~~~  328 (691)
                      +...|++.++.++
T Consensus       212 i~Q~g~p~ely~~  224 (338)
T COG3839         212 IQQVGTPLELYER  224 (338)
T ss_pred             eeecCChHHHhhC
Confidence            9999999999654

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.1e-47  Score=385.77  Aligned_cols=209  Identities=35%  Similarity=0.574  Sum_probs=181.4

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      ++++||+..|..+..                 ...+|+|+|++|++||++||+|||||||||||++|+|+.. |++|+|.
T Consensus         2 i~~~~v~k~y~~~~~-----------------~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~-pt~G~v~   63 (226)
T COG1136           2 IELKNVSKIYGLGGE-----------------KVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK-PTSGEVL   63 (226)
T ss_pred             cEEeeeEEEeccCCc-----------------ceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-CCCceEE
Confidence            578999999874311                 1569999999999999999999999999999999999764 6899999


Q ss_pred             ECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-ccc
Q 005545          160 YNGRQFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN-SVV  230 (691)
Q Consensus       160 ~~G~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~v  230 (691)
                      ++|+++..       .+ ++.+|||+|+..|.|++||.||+.+++.+.   .....+.+++++++++.+||.+..+ +++
T Consensus        64 i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~---~~~~~~~~~~~~~l~~~lgl~~~~~~~~p  140 (226)
T COG1136          64 INGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIA---GKSAGRRKRAAEELLEVLGLEDRLLKKKP  140 (226)
T ss_pred             ECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHc---CCChhHHHHHHHHHHHhcCChhhhccCCc
Confidence            99988752       23 457999999999999999999999876554   2223256678899999999987666 444


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                           .+|||||||||+|||||+.+|++|++||||.+||+.++..|+++|++++++ |+|||++|||+  .+...|||++
T Consensus       141 -----~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i  213 (226)
T COG1136         141 -----SELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVI  213 (226)
T ss_pred             -----hhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEE
Confidence                 579999999999999999999999999999999999999999999999875 99999999996  4678999999


Q ss_pred             EecCCeE
Q 005545          310 VLSEGSP  316 (691)
Q Consensus       310 ~L~~G~i  316 (691)
                      .|.+|++
T Consensus       214 ~l~dG~~  220 (226)
T COG1136         214 ELKDGKI  220 (226)
T ss_pred             EEeCCee
Confidence            9999993

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.7e-48  Score=384.56  Aligned_cols=222  Identities=29%  Similarity=0.503  Sum_probs=195.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      .+|+++||+..|+.                    .+++|+|||++|++||++||+||||||||||||+|.|+. ++.+|+
T Consensus         2 ~~i~~~nl~k~yp~--------------------~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~-d~t~G~   60 (258)
T COG3638           2 MMIEVKNLSKTYPG--------------------GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLV-DPTSGE   60 (258)
T ss_pred             ceEEEeeeeeecCC--------------------CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhccc-CCCcce
Confidence            47999999999972                    256999999999999999999999999999999999976 577999


Q ss_pred             EEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHHHcCCCc
Q 005545          158 ITYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK------KLTREEKIEQAEMVIMELGLTR  224 (691)
Q Consensus       158 I~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~------~~~~~~~~~~v~~~l~~lgL~~  224 (691)
                      |.+||.++.+       .+|+++||++|++.|.+.+||.+|+..+..-+.+.      -.+++ .+.++-+.|+++|+.+
T Consensus        61 i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~-dk~~Al~aLervgi~~  139 (258)
T COG3638          61 ILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE-DKAQALDALERVGILD  139 (258)
T ss_pred             EEecccchhccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHH-HHHHHHHHHHHcCcHH
Confidence            9999987742       46789999999999999999999998765433221      12344 4557788999999999


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHh
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~  303 (691)
                      .+.++.+     .|||||+|||+|||||+.+|+++|.|||+++|||.+++++|+.|+++++ +|.|||++.||. +.+.+
T Consensus       140 ~A~qra~-----~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~  213 (258)
T COG3638         140 KAYQRAS-----TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKK  213 (258)
T ss_pred             HHHHHhc-----cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHH
Confidence            9888875     5999999999999999999999999999999999999999999999986 699999999996 46889


Q ss_pred             cCCEEEEecCCeEEEecCHhHHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +|||++-|++|+++|+|+++++-+
T Consensus       214 Y~~Riigl~~G~ivfDg~~~el~~  237 (258)
T COG3638         214 YADRIIGLKAGRIVFDGPASELTD  237 (258)
T ss_pred             HHhhheEecCCcEEEeCChhhhhH
Confidence            999999999999999999988754

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-48  Score=376.21  Aligned_cols=234  Identities=32%  Similarity=0.426  Sum_probs=207.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+..+|+.+|+..                    .++++||||+++.||+++|+|||||||||+||+|++++. |++|+|
T Consensus         1 Ml~v~~l~K~y~~~--------------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~-P~~G~v   59 (245)
T COG4555           1 MLEVTDLTKSYGSK--------------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI-PDSGKV   59 (245)
T ss_pred             CeeeeehhhhccCH--------------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc-CCCceE
Confidence            36778888877632                    248999999999999999999999999999999999884 779999


Q ss_pred             EECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          159 TYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       159 ~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      +++|.+..+   ..|++||.++.+..+|..||++|||.|.+++.   .+.+.+.+++++++.+.++|.++.|+++|    
T Consensus        60 ~idg~d~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~----  132 (245)
T COG4555          60 TIDGVDTVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG----  132 (245)
T ss_pred             EEeecccccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh----
Confidence            999988753   57899999998888999999999999988764   66788888999999999999999999997    


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                       ++|.|+||||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.+ +++.++||+|++|++|+
T Consensus       133 -~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m-~EvealCDrvivlh~Ge  210 (245)
T COG4555         133 -EFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIM-QEVEALCDRVIVLHKGE  210 (245)
T ss_pred             -hhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccH-HHHHHhhheEEEEecCc
Confidence             5999999999999999999999999999999999999999999999999999999999995 57889999999999999


Q ss_pred             EEEecCHhHHHHHhhhcCCCCCCCCCChHHHHHHhh
Q 005545          316 PIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDLA  351 (691)
Q Consensus       316 iv~~G~~~~~~~~f~~~g~~~~~~~~npad~~l~l~  351 (691)
                      +++.|+.+++...-.         ..|+.+-+++..
T Consensus       211 vv~~gs~~~l~~r~~---------~~~le~~f~~~l  237 (245)
T COG4555         211 VVLEGSIEALDARTV---------LRNLEEIFAFAL  237 (245)
T ss_pred             EEEcCCHHHHHHHHh---------hcCHHHHHHHhh
Confidence            999999988865421         356655555543

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-47  Score=386.44  Aligned_cols=205  Identities=35%  Similarity=0.513  Sum_probs=184.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..+++++|+++|..                     ..+|+|+|++|++||+++|+||||||||||||+|+|+. .+.+|+
T Consensus         2 ~~l~i~~v~~~f~~---------------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~-~p~~G~   59 (248)
T COG1116           2 ALLEIEGVSKSFGG---------------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE-KPTSGE   59 (248)
T ss_pred             ceEEEEeeEEEeCc---------------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCce
Confidence            35889999998872                     46999999999999999999999999999999999977 578999


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      |.++|+++ ......++||+|++.++|.+||+||+.++...+   ..++++.++++++.|+.+||.+..+...     ++
T Consensus        60 V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~---~~~~~e~~~~a~~~L~~VgL~~~~~~~P-----~q  130 (248)
T COG1116          60 VLLDGRPV-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELR---GKSKAEARERAKELLELVGLAGFEDKYP-----HQ  130 (248)
T ss_pred             EEECCccc-CCCCCCEEEEeccCcccchhhHHhhheehhhcc---ccchHhHHHHHHHHHHHcCCcchhhcCc-----cc
Confidence            99999998 445678999999999999999999999987654   2456777779999999999998888654     68


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      |||||||||+|||||+.+|++|+||||+++||+.|+.++.+.|.++.+ .++||+++|||.. ++..++|||++|+++
T Consensus       131 LSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~-EAv~LsdRivvl~~~  207 (248)
T COG1116         131 LSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVD-EAVYLADRVVVLSNR  207 (248)
T ss_pred             cChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHhhhCEEEEecCC
Confidence            999999999999999999999999999999999999999999999986 5899999999975 677899999999984

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-47  Score=387.16  Aligned_cols=219  Identities=30%  Similarity=0.521  Sum_probs=189.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.|..                     .++|+||||++++|++++|+||||||||||+|+|.|++ .|.+|+
T Consensus         3 ~~i~v~nl~v~y~~---------------------~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll-~p~~G~   60 (254)
T COG1121           3 PMIEVENLTVSYGN---------------------RPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL-KPSSGE   60 (254)
T ss_pred             cEEEEeeeEEEECC---------------------EeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCcce
Confidence            46899999999972                     14999999999999999999999999999999999987 477999


Q ss_pred             EEECCEeCChhc-cccEEEEccCC---CCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          158 ITYNGRQFSSSL-KRKTGFVTQDD---VLYPHLTVLETLSYAALLRLP--KKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       158 I~~~G~~~~~~~-~~~igyv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      |.++|++..+.. +.+||||||..   .-|| +||+|.+..+...+..  ...++ +.++.++++|+.+|+.+.+|+.+|
T Consensus        61 i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~  138 (254)
T COG1121          61 IKIFGKPVRKRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG  138 (254)
T ss_pred             EEEccccccccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc
Confidence            999999876532 46899999954   3354 7999999886432221  12233 346789999999999999999997


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                           +|||||+|||.|||||+.+|++|+|||||+|+|+.++..++++|++++++|+||++++||+. .+.+.||+|+.|
T Consensus       139 -----~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~L  212 (254)
T COG1121         139 -----ELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICL  212 (254)
T ss_pred             -----ccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEE
Confidence                 59999999999999999999999999999999999999999999999999999999999975 588999999999


Q ss_pred             cCCeEEEecCHhHHHH
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      + +++++.|+++++.+
T Consensus       213 n-~~~~~~G~~~~~~~  227 (254)
T COG1121         213 N-RHLIASGPPEEVLT  227 (254)
T ss_pred             c-CeeEeccChhhccC
Confidence            5 67889999988854

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.3e-47  Score=367.43  Aligned_cols=213  Identities=31%  Similarity=0.444  Sum_probs=193.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+|+||++.|+.+                    +.+|+||||+|++||++-|+||||||||||||+|.+.. .|+.|+|
T Consensus         1 mI~f~~V~k~Y~~g--------------------~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e-~pt~G~i   59 (223)
T COG2884           1 MIRFENVSKAYPGG--------------------REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEE-RPTRGKI   59 (223)
T ss_pred             CeeehhhhhhcCCC--------------------chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhh-cCCCceE
Confidence            47999999999832                    46999999999999999999999999999999999966 5789999


Q ss_pred             EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      +++|++++.       .+|++||+|+||..|.++.||+||+.|+.+..   +.+.++.++++.++|+.+||.+..+... 
T Consensus        60 ~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-  135 (223)
T COG2884          60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-  135 (223)
T ss_pred             EECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-
Confidence            999999863       36899999999999999999999999987654   5577888899999999999998887644 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                          .+|||||||||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|.|||++||| ...+..+-.|++.|
T Consensus       136 ----~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd-~~lv~~~~~rvl~l  210 (223)
T COG2884         136 ----SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHD-LELVNRMRHRVLAL  210 (223)
T ss_pred             ----cccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEecc-HHHHHhccCcEEEE
Confidence                5799999999999999999999999999999999999999999999999999999999999 45677788899999


Q ss_pred             cCCeEEEecC
Q 005545          312 SEGSPIYSGR  321 (691)
Q Consensus       312 ~~G~iv~~G~  321 (691)
                      ++|+++.+..
T Consensus       211 ~~Grl~~d~~  220 (223)
T COG2884         211 EDGRLVRDES  220 (223)
T ss_pred             eCCEEEeccc
Confidence            9999987654

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.5e-47  Score=387.79  Aligned_cols=209  Identities=34%  Similarity=0.535  Sum_probs=188.7

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCE---eCCh--hccccEEEEccCCCCCCCC
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR---QFSS--SLKRKTGFVTQDDVLYPHL  186 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~---~~~~--~~~~~igyv~Q~~~l~~~l  186 (691)
                      ...+++|||++|+.||++||+||||||||||||+|+|+. .|++|.|.+||+   +.++  ...|+||||+|+..+|++|
T Consensus        14 ~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe-~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm   92 (345)
T COG1118          14 AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE-TPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM   92 (345)
T ss_pred             cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC-CCCCceEEECCEeccchhccchhhcceeEEEechhhcccc
Confidence            456899999999999999999999999999999999977 578999999999   5443  2346899999999999999


Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545          187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS  266 (691)
Q Consensus       187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts  266 (691)
                      ||.||+.|+...+ ....++.+.+.+++++|+.+.|++..+.+.     .+|||||||||++||||+.+|++||||||++
T Consensus        93 tVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----~QLSGGQrQRVALARALA~eP~vLLLDEPf~  166 (345)
T COG1118          93 TVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRYP-----AQLSGGQRQRVALARALAVEPKVLLLDEPFG  166 (345)
T ss_pred             hHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcCc-----hhcChHHHHHHHHHHHhhcCCCeEeecCCch
Confidence            9999999998765 233456778889999999999998877654     6799999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHH
Q 005545          267 GLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~  328 (691)
                      +||..-+.++.+.|+++.++ |.|+|++|||+ +++.++||||++|++|+|...|+++|+.+.
T Consensus       167 ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~Ieqvg~p~ev~~~  228 (345)
T COG1118         167 ALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDEVYDH  228 (345)
T ss_pred             hhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCeeeeeCCHHHHhcC
Confidence            99999999999999999875 99999999996 578999999999999999999999999654

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=4.8e-46  Score=396.65  Aligned_cols=220  Identities=30%  Similarity=0.447  Sum_probs=196.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|..                     +.+|+||||+|++||++||+||||||||||+++|+|++ .+++|+
T Consensus         6 ~~i~i~~l~k~~~~---------------------~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~-~p~~G~   63 (306)
T PRK13537          6 APIDFRNVEKRYGD---------------------KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT-HPDAGS   63 (306)
T ss_pred             ceEEEEeEEEEECC---------------------eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceE
Confidence            46999999999861                     35999999999999999999999999999999999977 477999


Q ss_pred             EEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          158 ITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       158 I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      |.++|.++..   ..++++||++|++.+++.+||+||+.|.+..+   ..+..+..++++++++.++|.+..++.++   
T Consensus        64 v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---  137 (306)
T PRK13537         64 ISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG---  137 (306)
T ss_pred             EEECCEecccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh---
Confidence            9999998753   35678999999999999999999999766543   23444555678899999999988888774   


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                        +||||||||++||+||+.+|++|+|||||+|||+.++..+.++|++++++|+|||++||++. ++.++||+|++|++|
T Consensus       138 --~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G  214 (306)
T PRK13537        138 --ELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEG  214 (306)
T ss_pred             --hCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence              69999999999999999999999999999999999999999999999878999999999964 688999999999999


Q ss_pred             eEEEecCHhHHHHH
Q 005545          315 SPIYSGRAAQVMDY  328 (691)
Q Consensus       315 ~iv~~G~~~~~~~~  328 (691)
                      ++++.|+++++..-
T Consensus       215 ~i~~~g~~~~l~~~  228 (306)
T PRK13537        215 RKIAEGAPHALIES  228 (306)
T ss_pred             EEEEECCHHHHHhc
Confidence            99999999998653

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.5e-46  Score=399.55  Aligned_cols=221  Identities=28%  Similarity=0.453  Sum_probs=194.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|+.+.                 +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+. ++++|+|
T Consensus         1 mI~~~~lsk~y~~~~-----------------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~-~p~~G~I   62 (343)
T TIGR02314         1 MIKLSNITKVFHQGT-----------------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTSGSV   62 (343)
T ss_pred             CEEEEEEEEEECCCC-----------------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEE
Confidence            379999999996211                 1235999999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      .++|+++..       ..++.+||++|+..+++.+||+||+.++....   ..++++.++++.++++.+||.+..+..+ 
T Consensus        63 ~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-  138 (343)
T TIGR02314        63 IVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-  138 (343)
T ss_pred             EECCEECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-
Confidence            999998853       24678999999999999999999999875432   2355666778999999999998877665 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          ++|||||||||+|||||+.+|++|+|||||||||+.++..++++|++++++ |.|||++||++ +.+.++||++++
T Consensus       139 ----~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~v  213 (343)
T TIGR02314       139 ----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAV  213 (343)
T ss_pred             ----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence                479999999999999999999999999999999999999999999999875 99999999996 467899999999


Q ss_pred             ecCCeEEEecCHhHHH
Q 005545          311 LSEGSPIYSGRAAQVM  326 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~  326 (691)
                      |++|++++.|+++++.
T Consensus       214 l~~G~iv~~g~~~~v~  229 (343)
T TIGR02314       214 ISNGELIEQGTVSEIF  229 (343)
T ss_pred             EECCEEEEEcCHHHHH
Confidence            9999999999998875

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-45  Score=400.95  Aligned_cols=219  Identities=31%  Similarity=0.481  Sum_probs=195.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                    ++.+|+|+||++++||+++|+||||||||||||+|+|+. .+++|+|
T Consensus         3 ~l~i~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~-~p~~G~I   61 (356)
T PRK11650          3 GLKLQAVRKSYDG--------------------KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE-RITSGEI   61 (356)
T ss_pred             EEEEEeEEEEeCC--------------------CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEE
Confidence            5899999999841                    135899999999999999999999999999999999976 5789999


Q ss_pred             EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      .++|+++..  ..++.+|||+|++.+||++||+||+.|+...+   ..++.+..++++++++.+||.+..++.+     +
T Consensus        62 ~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~  133 (356)
T PRK11650         62 WIGGRVVNELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----R  133 (356)
T ss_pred             EECCEECCCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----h
Confidence            999998853  34578999999999999999999999986432   2455666678999999999998887766     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +|||||||||+|||||+.+|++||||||||+||+.++..+.+.|+++.++ |.|+|++|||+ .++.+++|++++|++|+
T Consensus       134 ~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~  212 (356)
T PRK11650        134 ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGV  212 (356)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence            79999999999999999999999999999999999999999999999875 99999999996 46889999999999999


Q ss_pred             EEEecCHhHHHH
Q 005545          316 PIYSGRAAQVMD  327 (691)
Q Consensus       316 iv~~G~~~~~~~  327 (691)
                      ++..|+++++.+
T Consensus       213 i~~~g~~~~~~~  224 (356)
T PRK11650        213 AEQIGTPVEVYE  224 (356)
T ss_pred             EEEECCHHHHHh
Confidence            999999998854

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.6e-46  Score=371.26  Aligned_cols=223  Identities=28%  Similarity=0.402  Sum_probs=191.5

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+.+||++.|+.+..                 ...+|+||||+|++||+++|+|+||||||||.++|+|+. .+.+|+
T Consensus         2 ~~l~v~nl~~~y~~~~~-----------------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~-~p~~G~   63 (252)
T COG1124           2 TLLSVRNLSIVYGGGKF-----------------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE-KPSSGS   63 (252)
T ss_pred             ceEEEeceEEEecCCcc-----------------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc-CCCCce
Confidence            36899999999984321                 125999999999999999999999999999999999976 578999


Q ss_pred             EEECCEeCCh-----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      |.++|++...     ..++.+.+||||+.  +.|..||++.|.-+...   .+.++.+  +++.++++.+||.+..-.+ 
T Consensus        64 I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R-  137 (252)
T COG1124          64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDR-  137 (252)
T ss_pred             EEECCcccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhc-
Confidence            9999987754     35778999999985  89999999998766532   2334433  3489999999997644333 


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                         ++.+||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|++|||. ..+..+||||+
T Consensus       138 ---~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~  213 (252)
T COG1124         138 ---RPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIA  213 (252)
T ss_pred             ---CchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhhee
Confidence               23579999999999999999999999999999999999999999999999974 88999999995 56899999999


Q ss_pred             EecCCeEEEecCHhHHHHH
Q 005545          310 VLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~~  328 (691)
                      +|++|++++.++.+++.+.
T Consensus       214 Vm~~G~ivE~~~~~~l~~~  232 (252)
T COG1124         214 VMDNGQIVEIGPTEELLSH  232 (252)
T ss_pred             eeeCCeEEEeechhhhhcC
Confidence            9999999999999998653

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2.3e-45  Score=396.07  Aligned_cols=224  Identities=30%  Similarity=0.429  Sum_probs=198.2

Q ss_pred             CccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 005545           74 SLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK  153 (691)
Q Consensus        74 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~  153 (691)
                      .+..+.|+++||+++|+.                     +.+|+|+||+|++||++||+||||||||||+++|+|++ .|
T Consensus        36 ~~~~~~i~i~nl~k~y~~---------------------~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~-~p   93 (340)
T PRK13536         36 SMSTVAIDLAGVSKSYGD---------------------KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMT-SP   93 (340)
T ss_pred             cCCceeEEEEEEEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CC
Confidence            445678999999999961                     35999999999999999999999999999999999987 47


Q ss_pred             CceEEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545          154 FSGKITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       154 ~~G~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      ++|+|.++|+++..   ..++.+||++|++.+++.+||.||+.+.....   .....+..++++++++.++|.+..++++
T Consensus        94 ~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~  170 (340)
T PRK13536         94 DAGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARV  170 (340)
T ss_pred             CceEEEECCEECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCCh
Confidence            79999999998753   35678999999999999999999998765433   2234445567888999999998888877


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                      +     .|||||||||+||+||+++|++|||||||+|||+.++..+.++|++++++|+|||++||++ +++.++||+|++
T Consensus       171 ~-----~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l-~e~~~~~d~i~i  244 (340)
T PRK13536        171 S-----DLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFM-EEAERLCDRLCV  244 (340)
T ss_pred             h-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEE
Confidence            4     6999999999999999999999999999999999999999999999988899999999996 468899999999


Q ss_pred             ecCCeEEEecCHhHHHHH
Q 005545          311 LSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~~  328 (691)
                      |++|++++.|+++++...
T Consensus       245 l~~G~i~~~g~~~~l~~~  262 (340)
T PRK13536        245 LEAGRKIAEGRPHALIDE  262 (340)
T ss_pred             EECCEEEEEcCHHHHHhh
Confidence            999999999999998654

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.8e-45  Score=398.82  Aligned_cols=218  Identities=32%  Similarity=0.513  Sum_probs=196.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+|||||||||||++|+|+. .+++|+|
T Consensus         4 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~-~p~~G~I   61 (353)
T TIGR03265         4 YLSIDNIRKRFGA---------------------FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE-RQTAGTI   61 (353)
T ss_pred             EEEEEEEEEEeCC---------------------eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCceEE
Confidence            6899999999861                     35899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      .++|+++..  ..++.+|||+|+..+||++||+||+.|+...+   ..++.+..++++++++.+||.+..++.+     +
T Consensus        62 ~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~  133 (353)
T TIGR03265        62 YQGGRDITRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----G  133 (353)
T ss_pred             EECCEECCCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----h
Confidence            999998853  34678999999999999999999999986532   3456667788999999999998888765     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +|||||||||+|||||+.+|++||||||+++||+.++.++.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+
T Consensus       134 ~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~  212 (353)
T TIGR03265       134 QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGV  212 (353)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence            79999999999999999999999999999999999999999999999875 899999999964 6889999999999999


Q ss_pred             EEEecCHhHHHH
Q 005545          316 PIYSGRAAQVMD  327 (691)
Q Consensus       316 iv~~G~~~~~~~  327 (691)
                      +++.|+++++.+
T Consensus       213 i~~~g~~~~~~~  224 (353)
T TIGR03265       213 IEQVGTPQEIYR  224 (353)
T ss_pred             EEEEcCHHHHHh
Confidence            999999998864

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.2e-45  Score=377.21  Aligned_cols=217  Identities=32%  Similarity=0.519  Sum_probs=188.7

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~   58 (235)
T cd03261           1 IELRGLTKSFGG---------------------RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL-RPDSGEVL   58 (235)
T ss_pred             CeEEEEEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            468999998851                     35999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..       ..++.++||+|++.+++.+||+||+.+.....  ...+.++..++++++++.+||.+..++.+  
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  134 (235)
T cd03261          59 IDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREH--TRLSEEEIREIVLEKLEAVGLRGAEDLYP--  134 (235)
T ss_pred             ECCEEccccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhc--cCCCHHHHHHHHHHHHHHcCCchhhcCCh--
Confidence            99988742       24668999999999999999999998864321  12344455667889999999987777665  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                         +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|
T Consensus       135 ---~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l  210 (235)
T cd03261         135 ---AELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVL  210 (235)
T ss_pred             ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEE
Confidence               46999999999999999999999999999999999999999999999987 4899999999965 577899999999


Q ss_pred             cCCeEEEecCHhHHH
Q 005545          312 SEGSPIYSGRAAQVM  326 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~  326 (691)
                      ++|++++.|+++++.
T Consensus       211 ~~G~i~~~g~~~~~~  225 (235)
T cd03261         211 YDGKIVAEGTPEELR  225 (235)
T ss_pred             ECCeEEEecCHHHHc
Confidence            999999999988764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-45  Score=396.74  Aligned_cols=218  Identities=25%  Similarity=0.468  Sum_probs=195.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+|+++++||+++|+||||||||||||+|+|+. .+++|+|
T Consensus         6 ~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I   63 (351)
T PRK11432          6 FVVLKNITKRFGS---------------------NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE-KPTEGQI   63 (351)
T ss_pred             EEEEEeEEEEECC---------------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC-CCCceEE
Confidence            6999999999851                     35899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      .++|+++..  ..++.+|||+|++.+||++||+||+.|+...+   ..++.+..++++++++.+||.+..++.+     +
T Consensus        64 ~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~  135 (351)
T PRK11432         64 FIDGEDVTHRSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----D  135 (351)
T ss_pred             EECCEECCCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----h
Confidence            999998854  34578999999999999999999999986543   3456667788999999999988777665     5


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      .|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++ |+|+|++|||+. ++.+++|++++|++|+
T Consensus       136 ~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~  214 (351)
T PRK11432        136 QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGK  214 (351)
T ss_pred             hCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence            79999999999999999999999999999999999999999999999875 899999999964 6889999999999999


Q ss_pred             EEEecCHhHHHH
Q 005545          316 PIYSGRAAQVMD  327 (691)
Q Consensus       316 iv~~G~~~~~~~  327 (691)
                      ++..|+++++..
T Consensus       215 i~~~g~~~~~~~  226 (351)
T PRK11432        215 IMQIGSPQELYR  226 (351)
T ss_pred             EEEEcCHHHHHh
Confidence            999999998854

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.6e-46  Score=363.59  Aligned_cols=223  Identities=23%  Similarity=0.397  Sum_probs=192.0

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR----  151 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~----  151 (691)
                      ....++++||++.|..                     +.+|+|||+.|++++++|+|||||||||||||+|.....    
T Consensus         4 ~~~~~~~~~l~~yYg~---------------------~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~   62 (253)
T COG1117           4 KIPAIEVRDLNLYYGD---------------------KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPG   62 (253)
T ss_pred             ccceeEecceeEEECc---------------------hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcC
Confidence            3467899999999972                     469999999999999999999999999999999987432    


Q ss_pred             CCCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545          152 GKFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       152 ~~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~  225 (691)
                      ...+|+|.++|+++..      .+|+++|+|||.|.-|| +|++||+.|+.++.   +...++.++.|+..|+...|.+.
T Consensus        63 ~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~---g~~~~~ldeiVe~sLk~AaLWdE  138 (253)
T COG1117          63 ARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH---GIKDKELDEIVESSLKKAALWDE  138 (253)
T ss_pred             ceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhh---ccchHHHHHHHHHHHHHhHhHHH
Confidence            1358999999999853      57999999999999998 99999999997764   22336677889999999888543


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      -..+.. ....+|||||+||++|||||+.+|+|||||||||+|||.+...|-+++.+|++ .-|||++||.+ ..+.+++
T Consensus       139 VKDrL~-~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~-~yTIviVTHnm-qQAaRvS  215 (253)
T COG1117         139 VKDRLH-KSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK-KYTIVIVTHNM-QQAARVS  215 (253)
T ss_pred             hHHHhh-CCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh-ccEEEEEeCCH-HHHHHHh
Confidence            322222 12357999999999999999999999999999999999999999999999985 58999999996 4688999


Q ss_pred             CEEEEecCCeEEEecCHhHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      |+..++..|+++++|++++++
T Consensus       216 D~taFf~~G~LvE~g~T~~iF  236 (253)
T COG1117         216 DYTAFFYLGELVEFGPTDKIF  236 (253)
T ss_pred             HhhhhhcccEEEEEcCHHhhh
Confidence            999999999999999999984

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=5e-45  Score=396.12  Aligned_cols=218  Identities=27%  Similarity=0.470  Sum_probs=195.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc--e
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS--G  156 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~--G  156 (691)
                      .|+++||+++|..                     +.+|+|+|++|++||+++|+|||||||||||++|+|+. .+++  |
T Consensus         5 ~l~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~-~p~~~~G   62 (362)
T TIGR03258         5 GIRIDHLRVAYGA---------------------NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV-KAAGLTG   62 (362)
T ss_pred             EEEEEEEEEEECC---------------------eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCE
Confidence            4889999999861                     35899999999999999999999999999999999976 4678  9


Q ss_pred             EEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          157 KITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       157 ~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      +|.++|+++..  ..++.+|||+|++.+||++||+||+.|+...+   ..++.+..++++++++.+||++..++++    
T Consensus        63 ~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~----  135 (362)
T TIGR03258        63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLP----  135 (362)
T ss_pred             EEEECCEECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCCh----
Confidence            99999998753  34578999999999999999999999986533   3455666778999999999998888766    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG--GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                       ++|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++  |+|+|++|||+ .++..++|+|++|+
T Consensus       136 -~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~  213 (362)
T TIGR03258       136 -AQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMK  213 (362)
T ss_pred             -hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence             479999999999999999999999999999999999999999999999876  79999999996 46889999999999


Q ss_pred             CCeEEEecCHhHHHH
Q 005545          313 EGSPIYSGRAAQVMD  327 (691)
Q Consensus       313 ~G~iv~~G~~~~~~~  327 (691)
                      +|+++..|+++++.+
T Consensus       214 ~G~i~~~g~~~~~~~  228 (362)
T TIGR03258       214 DGRLAAHGEPQALYD  228 (362)
T ss_pred             CCEEEEEcCHHHHHh
Confidence            999999999998854

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=9.1e-45  Score=393.34  Aligned_cols=221  Identities=30%  Similarity=0.476  Sum_probs=194.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+|++|++||+++|+||||||||||||+|+|+. ++++|+|
T Consensus         2 ~L~i~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~I   59 (353)
T PRK10851          2 SIEIANIKKSFGR---------------------TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE-HQTSGHI   59 (353)
T ss_pred             EEEEEEEEEEeCC---------------------eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            5889999999851                     35899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      +++|+++..  ..++.++||+|++.++|++||+||+.|+...... ...++++..++++++++.++|.+..++++     
T Consensus        60 ~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----  134 (353)
T PRK10851         60 RFHGTDVSRLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----  134 (353)
T ss_pred             EECCEECCCCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----
Confidence            999998853  3456899999999999999999999987543110 12345566678999999999988877765     


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++ .++.++||++++|++|
T Consensus       135 ~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G  213 (353)
T PRK10851        135 AQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQG  213 (353)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence            479999999999999999999999999999999999999999999999875 89999999996 4688999999999999


Q ss_pred             eEEEecCHhHHHH
Q 005545          315 SPIYSGRAAQVMD  327 (691)
Q Consensus       315 ~iv~~G~~~~~~~  327 (691)
                      ++++.|+++++..
T Consensus       214 ~i~~~g~~~~i~~  226 (353)
T PRK10851        214 NIEQAGTPDQVWR  226 (353)
T ss_pred             EEEEEcCHHHHHh
Confidence            9999999998854

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=9.9e-45  Score=395.26  Aligned_cols=220  Identities=27%  Similarity=0.455  Sum_probs=196.1

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +..|+++||+++|..                     +.+|+|+|+++++||+++|+|||||||||||++|+|+. .+.+|
T Consensus        12 ~~~L~l~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~-~p~~G   69 (375)
T PRK09452         12 SPLVELRGISKSFDG---------------------KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE-TPDSG   69 (375)
T ss_pred             CceEEEEEEEEEECC---------------------eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCce
Confidence            346999999999861                     35899999999999999999999999999999999977 57799


Q ss_pred             EEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          157 KITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       157 ~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      +|.++|+++..  ..++.+|||+|++.+||++||+||+.|+...+   ..++.+..++++++++.+||.+..++++    
T Consensus        70 ~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p----  142 (375)
T PRK09452         70 RIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP----  142 (375)
T ss_pred             EEEECCEECCCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh----
Confidence            99999998853  34678999999999999999999999976432   2345566678899999999998888766    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                       .+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++|||+ .++..++|++++|++
T Consensus       143 -~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~  220 (375)
T PRK09452        143 -HQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRD  220 (375)
T ss_pred             -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence             479999999999999999999999999999999999999999999999875 99999999996 468899999999999


Q ss_pred             CeEEEecCHhHHHH
Q 005545          314 GSPIYSGRAAQVMD  327 (691)
Q Consensus       314 G~iv~~G~~~~~~~  327 (691)
                      |+++..|+++++..
T Consensus       221 G~i~~~g~~~~i~~  234 (375)
T PRK09452        221 GRIEQDGTPREIYE  234 (375)
T ss_pred             CEEEEEcCHHHHHh
Confidence            99999999998854

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.7e-44  Score=384.60  Aligned_cols=219  Identities=31%  Similarity=0.428  Sum_probs=192.8

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      +.|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus         3 ~~i~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~   60 (303)
T TIGR01288         3 VAIDLVGVSKSYGD---------------------KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI-SPDRGK   60 (303)
T ss_pred             cEEEEEeEEEEeCC---------------------eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceE
Confidence            46899999999861                     35899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          158 ITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       158 I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      |.++|+++..   ..++.+||++|++.+++.+||+||+.+.....   ..+..+..++++++++.++|.+..++.++   
T Consensus        61 i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~---  134 (303)
T TIGR01288        61 ITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA---  134 (303)
T ss_pred             EEECCEECcccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh---
Confidence            9999998743   34678999999999999999999998654332   22344445677889999999988887764   


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                        .|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|
T Consensus       135 --~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G  211 (303)
T TIGR01288       135 --LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESG  211 (303)
T ss_pred             --hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence              69999999999999999999999999999999999999999999999888999999999964 678899999999999


Q ss_pred             eEEEecCHhHHHH
Q 005545          315 SPIYSGRAAQVMD  327 (691)
Q Consensus       315 ~iv~~G~~~~~~~  327 (691)
                      ++++.|+++++..
T Consensus       212 ~i~~~g~~~~~~~  224 (303)
T TIGR01288       212 RKIAEGRPHALID  224 (303)
T ss_pred             EEEEEcCHHHHHh
Confidence            9999999998864

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=8.3e-45  Score=386.74  Aligned_cols=210  Identities=30%  Similarity=0.463  Sum_probs=186.2

Q ss_pred             ccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh---hccccEEEEccCCCCCCCC
Q 005545          110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS---SLKRKTGFVTQDDVLYPHL  186 (691)
Q Consensus       110 ~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~l  186 (691)
                      ++.+.+|+|+||+|++||++||+||||||||||+|+|+|++ ++++|+|.++|+++..   ..++.+||++|++.+++.+
T Consensus         3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~   81 (302)
T TIGR01188         3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLL-RPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDL   81 (302)
T ss_pred             eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCC
Confidence            34467999999999999999999999999999999999987 4779999999998743   3466899999999999999


Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545          187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS  266 (691)
Q Consensus       187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts  266 (691)
                      ||+||+.+.+..+   .....+..++++++++.+||.+..++.++     .|||||||||+||+||+.+|++|||||||+
T Consensus        82 tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~  153 (302)
T TIGR01188        82 TGRENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTT  153 (302)
T ss_pred             cHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence            9999999876543   23344555678999999999988887764     699999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHh
Q 005545          267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF  329 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f  329 (691)
                      |||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++.+.+
T Consensus       154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~  215 (302)
T TIGR01188       154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRRL  215 (302)
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHhc
Confidence            99999999999999999888999999999964 688899999999999999999999886543

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.3e-45  Score=371.04  Aligned_cols=220  Identities=30%  Similarity=0.461  Sum_probs=195.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .++++|++|+|+..                    +.+|+|+|+++++||.++|+|+||||||||+++|+|++ .|.+|+|
T Consensus         3 ~i~~~~l~~~y~~~--------------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl-~p~~G~v   61 (235)
T COG1122           3 MIEAENLSFRYPGR--------------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLL-KPTSGEV   61 (235)
T ss_pred             eEEEEEEEEEcCCC--------------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcC-cCCCCEE
Confidence            58899999999731                    35999999999999999999999999999999999988 4679999


Q ss_pred             EECCEeCC-----hhccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          159 TYNGRQFS-----SSLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       159 ~~~G~~~~-----~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      .++|.+..     ..+++++|||+|++. .+-.-||.|.+.|+....   ..++++.+++++++++.+||.+.+++.+  
T Consensus        62 ~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p--  136 (235)
T COG1122          62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP--  136 (235)
T ss_pred             EECCeeccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc--
Confidence            99999865     257889999999973 333569999999987532   5567788899999999999999887765  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                         ..|||||||||+||.+|+.+|++|+|||||||||+..+.++++++++|.++ |+|||++|||. ..+..++|++++|
T Consensus       137 ---~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl  212 (235)
T COG1122         137 ---FNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVL  212 (235)
T ss_pred             ---cccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEE
Confidence               469999999999999999999999999999999999999999999999987 79999999996 5688999999999


Q ss_pred             cCCeEEEecCHhHHHHH
Q 005545          312 SEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~~  328 (691)
                      ++|+++++|+++++.+.
T Consensus       213 ~~G~i~~~g~p~~i~~~  229 (235)
T COG1122         213 DDGKILADGDPAEIFND  229 (235)
T ss_pred             ECCEEeecCCHHHHhhh
Confidence            99999999999887653

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.9e-44  Score=366.60  Aligned_cols=215  Identities=30%  Similarity=0.465  Sum_probs=187.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|..                     +.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++++|+|.
T Consensus         1 i~~~~~~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~   58 (220)
T cd03265           1 IEVENLVKKYGD---------------------FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL-KPTSGRAT   58 (220)
T ss_pred             CEEEEEEEEECC---------------------EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            468899998851                     35999999999999999999999999999999999976 46799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|.++..   ..++.++|++|++.+++.+||+||+.+....+   .....+..++++++++.+||.+..++.+     +
T Consensus        59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~  130 (220)
T cd03265          59 VAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLV-----K  130 (220)
T ss_pred             ECCEecCcChHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence            99988742   34568999999999999999999998865432   2234445567899999999987777766     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      .||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|+
T Consensus       131 ~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~  209 (220)
T cd03265         131 TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGR  209 (220)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCE
Confidence            69999999999999999999999999999999999999999999999876 899999999964 5778999999999999


Q ss_pred             EEEecCHhHH
Q 005545          316 PIYSGRAAQV  325 (691)
Q Consensus       316 iv~~G~~~~~  325 (691)
                      +++.|+++++
T Consensus       210 i~~~~~~~~~  219 (220)
T cd03265         210 IIAEGTPEEL  219 (220)
T ss_pred             EEEeCChHHc
Confidence            9999987653

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1.5e-44  Score=365.43  Aligned_cols=210  Identities=35%  Similarity=0.557  Sum_probs=182.4

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~   58 (213)
T cd03259           1 LELKGLSKTYGS---------------------VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE-RPDSGEIL   58 (213)
T ss_pred             CeeeeeEEEeCC---------------------eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence            468899998851                     35899999999999999999999999999999999977 47799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|+++..  ..++.++|++|++.+++.+||+||+.+.....   .....+..++++++++.+||.+..++.+     ..
T Consensus        59 ~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  130 (213)
T cd03259          59 IDGRDVTGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYP-----HE  130 (213)
T ss_pred             ECCEEcCcCchhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hh
Confidence            99998753  23567999999999999999999998765322   1234445567889999999987777665     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++
T Consensus       131 LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i  209 (213)
T cd03259         131 LSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRI  209 (213)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999987 4899999999964 57789999999999999


Q ss_pred             EEec
Q 005545          317 IYSG  320 (691)
Q Consensus       317 v~~G  320 (691)
                      ++.|
T Consensus       210 ~~~g  213 (213)
T cd03259         210 VQVG  213 (213)
T ss_pred             EecC
Confidence            8765

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-44  Score=391.91  Aligned_cols=218  Identities=30%  Similarity=0.499  Sum_probs=193.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+|+++++||+++|+||||||||||||+|+|++ .+++|+|
T Consensus         3 ~l~i~~l~~~~~~---------------------~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~-~p~~G~I   60 (369)
T PRK11000          3 SVTLRNVTKAYGD---------------------VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-DITSGDL   60 (369)
T ss_pred             EEEEEEEEEEeCC---------------------eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEE
Confidence            4899999999861                     35899999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      .++|+++..  ..++.+|||+|++.+++++||+||+.|+...+   ..+.++..++++++++.+||.+..++.+     .
T Consensus        61 ~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~-----~  132 (369)
T PRK11000         61 FIGEKRMNDVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKP-----K  132 (369)
T ss_pred             EECCEECCCCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCCh-----h
Confidence            999998753  23567999999999999999999999876432   2344556678899999999988777766     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++|||+. ++.++||++++|++|+
T Consensus       133 ~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~  211 (369)
T PRK11000        133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGR  211 (369)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            69999999999999999999999999999999999999999999999875 899999999964 6789999999999999


Q ss_pred             EEEecCHhHHHH
Q 005545          316 PIYSGRAAQVMD  327 (691)
Q Consensus       316 iv~~G~~~~~~~  327 (691)
                      ++..|+++++..
T Consensus       212 i~~~g~~~~i~~  223 (369)
T PRK11000        212 VAQVGKPLELYH  223 (369)
T ss_pred             EEEEcCHHHHHh
Confidence            999999998854

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=1.9e-44  Score=365.37  Aligned_cols=208  Identities=27%  Similarity=0.454  Sum_probs=180.7

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+..                   .+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~~-------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   61 (216)
T TIGR00960         2 IRFEQVSKAYPGG-------------------HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE-KPTRGKIR   61 (216)
T ss_pred             eEEEEEEEEecCC-------------------CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            7899999999521                   135999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..       ..++.++|++|++.+++.+||+||+.+....+   ....++..++++++++.+||.+..++.+  
T Consensus        62 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  136 (216)
T TIGR00960        62 FNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALP--  136 (216)
T ss_pred             ECCEehhhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh--
Confidence            99998742       14568999999999999999999998875432   2233445567889999999987777665  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+
T Consensus       137 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~  212 (216)
T TIGR00960       137 ---MQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLS  212 (216)
T ss_pred             ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence               469999999999999999999999999999999999999999999999877999999999964 5778999999999


Q ss_pred             CCeE
Q 005545          313 EGSP  316 (691)
Q Consensus       313 ~G~i  316 (691)
                      +|++
T Consensus       213 ~G~i  216 (216)
T TIGR00960       213 RGRL  216 (216)
T ss_pred             CCcC
Confidence            9974

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-44  Score=388.11  Aligned_cols=222  Identities=26%  Similarity=0.449  Sum_probs=193.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|+.+.                 ..+.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus         1 mi~i~~l~~~y~~~~-----------------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~-~p~~G~I   62 (343)
T PRK11153          1 MIELKNISKVFPQGG-----------------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLE-RPTSGRV   62 (343)
T ss_pred             CEEEEeEEEEeCCCC-----------------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceEE
Confidence            378999999996211                 1246999999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      .++|+++..       ..++.+|||+|++.+++.+||+||+.+....+   ..+..+..++++++++.+||.+..++.+ 
T Consensus        63 ~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-  138 (343)
T PRK11153         63 LVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-  138 (343)
T ss_pred             EECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-
Confidence            999998752       23578999999999999999999999875432   2344555668899999999988777665 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++
T Consensus       139 ----~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~  213 (343)
T PRK11153        139 ----AQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAV  213 (343)
T ss_pred             ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence                469999999999999999999999999999999999999999999999864 899999999964 57889999999


Q ss_pred             ecCCeEEEecCHhHHHH
Q 005545          311 LSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++++.|+++++..
T Consensus       214 l~~G~i~~~g~~~~~~~  230 (343)
T PRK11153        214 IDAGRLVEQGTVSEVFS  230 (343)
T ss_pred             EECCEEEEEcCHHHHHh
Confidence            99999999999988753

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=3.6e-44  Score=369.20  Aligned_cols=220  Identities=30%  Similarity=0.457  Sum_probs=188.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                     +.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i   59 (239)
T cd03296           2 SIEVRNVSKRFGD---------------------FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE-RPDSGTI   59 (239)
T ss_pred             EEEEEeEEEEECC---------------------EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence            5899999999861                     35999999999999999999999999999999999976 4679999


Q ss_pred             EECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      .++|+++..  ..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.+     
T Consensus        60 ~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----  134 (239)
T cd03296          60 LFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYP-----  134 (239)
T ss_pred             EECCEECCcCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcCh-----
Confidence            999998753  2356799999999999999999999886532210 00123344567889999999987777665     


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      ..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||++++|++|
T Consensus       135 ~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G  213 (239)
T cd03296         135 AQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKG  213 (239)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence            469999999999999999999999999999999999999999999999875 899999999964 577899999999999


Q ss_pred             eEEEecCHhHHH
Q 005545          315 SPIYSGRAAQVM  326 (691)
Q Consensus       315 ~iv~~G~~~~~~  326 (691)
                      ++++.|+++++.
T Consensus       214 ~i~~~~~~~~~~  225 (239)
T cd03296         214 RIEQVGTPDEVY  225 (239)
T ss_pred             eEEEecCHHHHh
Confidence            999999988763

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-44  Score=391.03  Aligned_cols=219  Identities=25%  Similarity=0.431  Sum_probs=195.5

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++|++++|..                     +.+|+|+|+++++||+++|+||||||||||||+|+|+. .+.+|+
T Consensus        18 ~~l~l~~v~~~~~~---------------------~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~-~p~~G~   75 (377)
T PRK11607         18 PLLEIRNLTKSFDG---------------------QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE-QPTAGQ   75 (377)
T ss_pred             ceEEEEeEEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCceE
Confidence            36999999999851                     35899999999999999999999999999999999977 577999


Q ss_pred             EEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          158 ITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       158 I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      |.++|+++..  ..++.+|||+|++.+||++||.||+.|+...+   ..++.+..++++++++.++|.+..++.+     
T Consensus        76 I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----  147 (377)
T PRK11607         76 IMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----  147 (377)
T ss_pred             EEECCEECCCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----
Confidence            9999998753  35678999999999999999999999976432   3355666778999999999998777665     


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      ++|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+++.+ .|.|+|++|||+. ++..++|++++|++|
T Consensus       148 ~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G  226 (377)
T PRK11607        148 HQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRG  226 (377)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCC
Confidence            47999999999999999999999999999999999999999999999876 4899999999964 688999999999999


Q ss_pred             eEEEecCHhHHHH
Q 005545          315 SPIYSGRAAQVMD  327 (691)
Q Consensus       315 ~iv~~G~~~~~~~  327 (691)
                      +++..|+++++..
T Consensus       227 ~i~~~g~~~~~~~  239 (377)
T PRK11607        227 KFVQIGEPEEIYE  239 (377)
T ss_pred             EEEEEcCHHHHHh
Confidence            9999999998854

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=3.3e-44  Score=368.38  Aligned_cols=219  Identities=30%  Similarity=0.481  Sum_probs=187.8

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   58 (236)
T cd03219           1 LEVRGLTKRFGG---------------------LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL-RPTSGSVL   58 (236)
T ss_pred             CeeeeeEEEECC---------------------EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCceEE
Confidence            468899998851                     35899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCC-------CCHHHHHHHHHHHHHHcCCCcccc
Q 005545          160 YNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK-------LTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       160 ~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      ++|+++..    . .++.++|++|++.+++.+||+||+.+.........       ....+..++++++++.+||.+..+
T Consensus        59 ~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  138 (236)
T cd03219          59 FDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLAD  138 (236)
T ss_pred             ECCEECCCCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhh
Confidence            99998753    1 24579999999999999999999988654321110       013344567889999999987777


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+     +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||+
T Consensus       139 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~  212 (236)
T cd03219         139 RPA-----GELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADR  212 (236)
T ss_pred             CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence            655     479999999999999999999999999999999999999999999999878899999999975 57789999


Q ss_pred             EEEecCCeEEEecCHhHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++|++++.|+++++.
T Consensus       213 i~~l~~G~i~~~~~~~~~~  231 (236)
T cd03219         213 VTVLDQGRVIAEGTPDEVR  231 (236)
T ss_pred             EEEEeCCEEEeecCHHHhc
Confidence            9999999999999988763

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=3.7e-44  Score=361.77  Aligned_cols=210  Identities=31%  Similarity=0.568  Sum_probs=183.8

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|+++.|.                     ++.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~---------------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (210)
T cd03269           1 LEVENVTKRFG---------------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII-LPDSGEVL   58 (210)
T ss_pred             CEEEEEEEEEC---------------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            46889999885                     135899999999999999999999999999999999976 47799999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS  239 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS  239 (691)
                      ++|+++....++.++|++|++.+++.+||+||+.+....+   .....+..++++++++.+||.+..++.+     ++||
T Consensus        59 ~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS  130 (210)
T cd03269          59 FDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELS  130 (210)
T ss_pred             ECCCchhHHHHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCC
Confidence            9999876555678999999999999999999998765432   2233445567889999999987777655     4699


Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEe
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS  319 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~  319 (691)
                      ||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.
T Consensus       131 ~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~  209 (210)
T cd03269         131 KGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLY  209 (210)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEec
Confidence            99999999999999999999999999999999999999999999877899999999964 57789999999999999876


Q ss_pred             c
Q 005545          320 G  320 (691)
Q Consensus       320 G  320 (691)
                      |
T Consensus       210 ~  210 (210)
T cd03269         210 G  210 (210)
T ss_pred             C
Confidence            4

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=100.00  E-value=6.6e-45  Score=346.31  Aligned_cols=215  Identities=31%  Similarity=0.484  Sum_probs=188.8

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |...||+|+|..-                       ==.++++|+.||++||+||||||||||||+|+|.. .|.+|+|+
T Consensus         2 l~L~~V~~~y~~~-----------------------~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~-~P~~G~i~   57 (231)
T COG3840           2 LALDDVRFSYGHL-----------------------PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE-TPASGEIL   57 (231)
T ss_pred             ccccceEEeeCcc-----------------------eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhcc-CCCCceEE
Confidence            5677888888732                       13578999999999999999999999999999976 47799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      +||++.+.  ...|-+++++||.++|.++||.+|+.++..   |.-.-.++.+++++.++.++||..+.++..+     +
T Consensus        58 i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~---P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----~  129 (231)
T COG3840          58 INGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLS---PGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----E  129 (231)
T ss_pred             EcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCC---cccccCHHHHHHHHHHHHHhChhhHhhhCcc-----c
Confidence            99999864  467789999999999999999999987643   2222234556789999999999999887765     6


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      |||||||||++||+|+.+-+||+||||+|+|||.-+.++..++.++++ ++.|++++||+|+ ++.+++|+++++++|||
T Consensus       130 LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri  208 (231)
T COG3840         130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRI  208 (231)
T ss_pred             cCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEE
Confidence            999999999999999999999999999999999999999999999996 5899999999986 57899999999999999


Q ss_pred             EEecCHhHHHH
Q 005545          317 IYSGRAAQVMD  327 (691)
Q Consensus       317 v~~G~~~~~~~  327 (691)
                      .+.|+.++.+.
T Consensus       209 ~~~g~~~~~~~  219 (231)
T COG3840         209 AAQGSTQELLS  219 (231)
T ss_pred             EeeccHHHHhc
Confidence            99999988754

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.1e-45  Score=356.74  Aligned_cols=210  Identities=29%  Similarity=0.499  Sum_probs=188.6

Q ss_pred             ccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCC
Q 005545          110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYP  184 (691)
Q Consensus       110 ~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~  184 (691)
                      |+++++++|||+++++||+++|+|||||||||.+.++.|+. .+++|+|.+||.+++.     ..|..+||+||++..|.
T Consensus        14 y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv-~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr   92 (243)
T COG1137          14 YKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLV-RPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFR   92 (243)
T ss_pred             hCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEE-ecCCceEEECCcccccCChHHHhhcCcccccccchHhh
Confidence            34567999999999999999999999999999999999987 5789999999999874     34568999999999999


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545          185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP  264 (691)
Q Consensus       185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP  264 (691)
                      .|||+|||......+. +...+.+.+++++++|++++|.+.++++-.     .||||||+|+.|||||+.+|+.++||||
T Consensus        93 ~LtV~dNi~~vlE~~~-~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGERRR~EIARaLa~~P~fiLLDEP  166 (243)
T COG1137          93 KLTVEDNIMAVLEIRE-KDLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGERRRVEIARALAANPKFILLDEP  166 (243)
T ss_pred             cCcHHHHHHHHHhhhh-cchhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccchHHHHHHHHHHhcCCCEEEecCC
Confidence            9999999987766542 122334566678899999999999998764     5999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|.||.+..+|.++++.|++.|..|++|-|+-. +...+|||.+++++|+++.+|+++++.+
T Consensus       167 FAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVR-EtL~i~dRaYIi~~G~vla~G~p~ei~~  228 (243)
T COG1137         167 FAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVR-ETLDICDRAYIISDGKVLAEGSPEEIVN  228 (243)
T ss_pred             ccCCCchhHHHHHHHHHHHHhCCceEEEccccHH-HHHhhhheEEEEecCeEEecCCHHHHhc
Confidence            9999999999999999999999999999999965 5789999999999999999999999854

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=100.00  E-value=3.9e-44  Score=388.42  Aligned_cols=209  Identities=26%  Similarity=0.437  Sum_probs=186.4

Q ss_pred             cccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hc----cccEEEEccCC
Q 005545          109 QTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SL----KRKTGFVTQDD  180 (691)
Q Consensus       109 ~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~----~~~igyv~Q~~  180 (691)
                      +++.+.+|+|+||+|++||+++|+|||||||||||++|+|+. ++++|+|+++|+++..    ..    ++.++||+|++
T Consensus         2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~-~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~   80 (363)
T TIGR01186         2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLI-EPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF   80 (363)
T ss_pred             ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCC-CCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence            345567999999999999999999999999999999999977 5789999999999853    23    57899999999


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEE
Q 005545          181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLL  260 (691)
Q Consensus       181 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl  260 (691)
                      .+++++||+||+.|.....   ..++++..+++.++++.+||++..++.+     ..|||||||||+|||||+.+|++||
T Consensus        81 ~l~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p-----~~LSGGq~QRV~lARAL~~~p~iLL  152 (363)
T TIGR01186        81 ALFPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYP-----DELSGGMQQRVGLARALAAEPDILL  152 (363)
T ss_pred             cCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            9999999999999876542   3456667778999999999988777665     4699999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          261 LDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       261 LDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |||||+|||+.++..+.+.|++++++ |+|||++|||+. ++.++||+|++|++|+++..|+++++..
T Consensus       153 lDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~~  219 (363)
T TIGR01186       153 MDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEILR  219 (363)
T ss_pred             EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHHh
Confidence            99999999999999999999999864 899999999964 5789999999999999999999998754

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.3e-44  Score=376.20  Aligned_cols=233  Identities=28%  Similarity=0.404  Sum_probs=195.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|+...                ...+.+|+|+|++|++||+++|+||||||||||+++|+|++ .+.+|+|
T Consensus         1 mi~~~~v~~~y~~~~----------------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   63 (288)
T PRK13643          1 MIKFEKVNYTYQPNS----------------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLL-QPTEGKV   63 (288)
T ss_pred             CEEEEEEEEEeCCCC----------------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC-CCCCcEE
Confidence            378999999996211                01135999999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545          159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN  227 (691)
Q Consensus       159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~  227 (691)
                      +++|.++..        ..++.+|||+|++  .+++ .||.||+.|+....   ..++++..+++.++++.+||. +..+
T Consensus        64 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~  139 (288)
T PRK13643         64 TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWE  139 (288)
T ss_pred             EECCEECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhcc
Confidence            999998741        3467899999986  5665 69999999875432   234566667889999999996 3555


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+     +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus       140 ~~~-----~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dr  213 (288)
T PRK13643        140 KSP-----FELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADY  213 (288)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCE
Confidence            544     579999999999999999999999999999999999999999999999878999999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHHH---HhhhcCCCCCC
Q 005545          308 VVVLSEGSPIYSGRAAQVMD---YFGSIGYVPGF  338 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~~  338 (691)
                      |++|++|++++.|+++++..   .+...|+.+|.
T Consensus       214 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~  247 (288)
T PRK13643        214 VYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPK  247 (288)
T ss_pred             EEEEECCEEEEECCHHHHHcCHHHHHHcCCCCCh
Confidence            99999999999999998753   34556776554

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=6.2e-44  Score=365.41  Aligned_cols=216  Identities=32%  Similarity=0.519  Sum_probs=187.7

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+                     .+.+|+|+||++++||+++|+|||||||||||++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~---------------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~   58 (232)
T cd03218           1 LRAENLSKRYG---------------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV-KPDSGKIL   58 (232)
T ss_pred             CeEEEEEEEeC---------------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence            46889999885                     135899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          160 YNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       160 ~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      ++|+++..    . .++.++|++|++.+++.+||+||+.+....+   .....+..++++++++.+|+.+..++.+    
T Consensus        59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----  131 (232)
T cd03218          59 LDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKA----  131 (232)
T ss_pred             ECCEecccCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh----
Confidence            99998642    1 2457999999999999999999998764322   1233445567889999999987777665    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                       +.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|
T Consensus       132 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G  209 (232)
T cd03218         132 -SSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEG  209 (232)
T ss_pred             -hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence             469999999999999999999999999999999999999999999999888999999999975 578999999999999


Q ss_pred             eEEEecCHhHHH
Q 005545          315 SPIYSGRAAQVM  326 (691)
Q Consensus       315 ~iv~~G~~~~~~  326 (691)
                      ++++.|+.+++.
T Consensus       210 ~i~~~~~~~~~~  221 (232)
T cd03218         210 KVLAEGTPEEIA  221 (232)
T ss_pred             eEEEEeCHHHhh
Confidence            999999988763

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=6.2e-44  Score=365.82  Aligned_cols=220  Identities=29%  Similarity=0.454  Sum_probs=189.5

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+...                 +.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         2 i~~~~l~~~~~~~~-----------------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~   63 (233)
T cd03258           2 IELKNVSKVFGDTG-----------------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE-RPTSGSVL   63 (233)
T ss_pred             eEEecceEEccCCC-----------------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            78999999986210                 0126999999999999999999999999999999999987 46799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..       ..++.++|++|++.+++.+|++||+.+....+   .....+..+.++++++.+||.+..++.+  
T Consensus        64 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  138 (233)
T cd03258          64 VDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP--  138 (233)
T ss_pred             ECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh--
Confidence            99998742       13568999999999999999999998865432   2234445567889999999987777655  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                         +.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|
T Consensus       139 ---~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l  214 (233)
T cd03258         139 ---AQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVM  214 (233)
T ss_pred             ---hhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence               469999999999999999999999999999999999999999999999875 899999999964 577899999999


Q ss_pred             cCCeEEEecCHhHHH
Q 005545          312 SEGSPIYSGRAAQVM  326 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~  326 (691)
                      ++|++++.|+.+++.
T Consensus       215 ~~G~i~~~~~~~~~~  229 (233)
T cd03258         215 EKGEVVEEGTVEEVF  229 (233)
T ss_pred             ECCEEEEecCHHHHh
Confidence            999999999988764

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=5.5e-44  Score=362.42  Aligned_cols=214  Identities=35%  Similarity=0.537  Sum_probs=185.4

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+...                 ....+|+|+|+++++||+++|+|+||||||||+++|+|++ ++.+|+|.
T Consensus         2 l~~~~v~~~~~~~~-----------------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   63 (218)
T cd03266           2 ITADALTKRFRDVK-----------------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL-EPDAGFAT   63 (218)
T ss_pred             eEEEEEEEecCCCC-----------------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCceEE
Confidence            78999999986210                 0125999999999999999999999999999999999976 46799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++.+||+||+.+....+   .....+..++++++++.+||.+..++.+     +
T Consensus        64 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~  135 (218)
T cd03266          64 VDGFDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRV-----G  135 (218)
T ss_pred             ECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhh-----h
Confidence            99998753   35678999999999999999999998765432   2334455667889999999987777665     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      .||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++
T Consensus       136 ~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i  214 (218)
T cd03266         136 GFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRV  214 (218)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence            69999999999999999999999999999999999999999999999877999999999964 57889999999999999


Q ss_pred             EEec
Q 005545          317 IYSG  320 (691)
Q Consensus       317 v~~G  320 (691)
                      ++.|
T Consensus       215 ~~~~  218 (218)
T cd03266         215 VYEG  218 (218)
T ss_pred             eecC
Confidence            8764

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=8.8e-44  Score=378.64  Aligned_cols=218  Identities=23%  Similarity=0.435  Sum_probs=193.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .++++|++++|..                     +.+|+|+||++++||++||+||||||||||+|+|+|++ ++++|+|
T Consensus         2 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~-~~~~G~i   59 (301)
T TIGR03522         2 SIRVSSLTKLYGT---------------------QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYL-PPDSGSV   59 (301)
T ss_pred             EEEEEEEEEEECC---------------------EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence            4889999999851                     35999999999999999999999999999999999977 5789999


Q ss_pred             EECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          159 TYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       159 ~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      .++|+++..   ..++.+||++|++.+++.+||.||+.+.+.++   ....++..++++++++.+||.+..++.+     
T Consensus        60 ~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----  131 (301)
T TIGR03522        60 QVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKI-----  131 (301)
T ss_pred             EECCEEcccChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCch-----
Confidence            999998753   35678999999999999999999999876543   2334455567899999999998888776     


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++++|++|+
T Consensus       132 ~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~  209 (301)
T TIGR03522       132 GQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGK  209 (301)
T ss_pred             hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCE
Confidence            46999999999999999999999999999999999999999999999975 799999999964 6889999999999999


Q ss_pred             EEEecCHhHHHHH
Q 005545          316 PIYSGRAAQVMDY  328 (691)
Q Consensus       316 iv~~G~~~~~~~~  328 (691)
                      +++.|+.+++...
T Consensus       210 i~~~g~~~~~~~~  222 (301)
T TIGR03522       210 IVADKKLDELSAA  222 (301)
T ss_pred             EEEeCCHHHHHHh
Confidence            9999999998653

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=7.7e-44  Score=362.13  Aligned_cols=216  Identities=33%  Similarity=0.504  Sum_probs=185.2

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+...                 ..+.+|+|+|++|++||+++|+||||||||||+|+|+|+. ++.+|+|.
T Consensus         1 l~~~~l~~~~~~~~-----------------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   62 (220)
T cd03293           1 LEVRNVSKTYGGGG-----------------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE-RPTSGEVL   62 (220)
T ss_pred             CeEEEEEEEcCCCC-----------------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            46899999886210                 1146999999999999999999999999999999999976 46799999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS  239 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS  239 (691)
                      ++|+++.. .++.++||+|++.+++.+||+||+.+....+   ....++..++++++++.+||.+..++.+     +.||
T Consensus        63 ~~g~~~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS  133 (220)
T cd03293          63 VDGEPVTG-PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYP-----HQLS  133 (220)
T ss_pred             ECCEECcc-ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----ccCC
Confidence            99998753 4678999999999999999999998865432   2233444567889999999987777665     4699


Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec--CCeE
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS--EGSP  316 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~--~G~i  316 (691)
                      ||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|+  +|++
T Consensus       134 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i  212 (220)
T cd03293         134 GGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRI  212 (220)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEE
Confidence            9999999999999999999999999999999999999999999975 5899999999974 5778999999999  7999


Q ss_pred             EEecCHh
Q 005545          317 IYSGRAA  323 (691)
Q Consensus       317 v~~G~~~  323 (691)
                      ++.++.+
T Consensus       213 ~~~~~~~  219 (220)
T cd03293         213 VAEVEVD  219 (220)
T ss_pred             EEEEEec
Confidence            9887653

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=6.9e-44  Score=360.39  Aligned_cols=210  Identities=31%  Similarity=0.526  Sum_probs=182.9

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 i~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~v~   58 (213)
T cd03301           1 VELENVTKRFGN---------------------VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE-EPTSGRIY   58 (213)
T ss_pred             CEEEeeEEEECC---------------------eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            468999998861                     35899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|+++..  ..++.++|++|++.+++.+||+||+.+....+   ....++..++++++++.+||.+..++.+     +.
T Consensus        59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  130 (213)
T cd03301          59 IGGRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKP-----KQ  130 (213)
T ss_pred             ECCEECCcCCcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCCh-----hh
Confidence            99998753  23457999999999998999999998865432   2234455567889999999987777665     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++
T Consensus       131 LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~  209 (213)
T cd03301         131 LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQI  209 (213)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999874 899999999964 57789999999999999


Q ss_pred             EEec
Q 005545          317 IYSG  320 (691)
Q Consensus       317 v~~G  320 (691)
                      ++.|
T Consensus       210 ~~~g  213 (213)
T cd03301         210 QQIG  213 (213)
T ss_pred             EecC
Confidence            9876

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-43  Score=374.09  Aligned_cols=223  Identities=26%  Similarity=0.442  Sum_probs=189.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+...                ...+.+|+||||+|++||++||+||||||||||+++|+|++ .+.+|+|
T Consensus         2 ~l~~~~l~~~y~~~~----------------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~-~p~~G~i   64 (287)
T PRK13637          2 SIKIENLTHIYMEGT----------------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL-KPTSGKI   64 (287)
T ss_pred             EEEEEEEEEECCCCC----------------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCccEE
Confidence            489999999996311                01245999999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh------hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccc
Q 005545          159 TYNGRQFSS------SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT--RCRNSV  229 (691)
Q Consensus       159 ~~~G~~~~~------~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~  229 (691)
                      .++|+++..      ..++.+|||+|++. .+...||+||+.+.....   ..++++..++++++++.+||.  +..++.
T Consensus        65 ~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  141 (287)
T PRK13637         65 IIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKS  141 (287)
T ss_pred             EECCEECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCC
Confidence            999998753      34678999999973 333579999999865322   345566667889999999997  455655


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      +     +.||||||||++|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. ++.++||++
T Consensus       142 ~-----~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv  215 (287)
T PRK13637        142 P-----FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRI  215 (287)
T ss_pred             c-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEE
Confidence            4     579999999999999999999999999999999999999999999999875 999999999964 577899999


Q ss_pred             EEecCCeEEEecCHhHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++|++++.|+++++.+
T Consensus       216 ~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13637        216 IVMNKGKCELQGTPREVFK  234 (287)
T ss_pred             EEEECCEEEEECCHHHHHh
Confidence            9999999999999998754

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=8.1e-44  Score=361.69  Aligned_cols=216  Identities=32%  Similarity=0.512  Sum_probs=187.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|...                   ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 l~~~~l~~~~~~~-------------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   60 (220)
T cd03263           1 LQIRNLTKTYKKG-------------------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL-RPTSGTAY   60 (220)
T ss_pred             CEEEeeEEEeCCC-------------------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence            4789999988521                   135999999999999999999999999999999999976 47799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++.+||+||+.+....+   .....+..++++++++.++|.+..++.+     +
T Consensus        61 ~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~  132 (220)
T cd03263          61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRA-----R  132 (220)
T ss_pred             ECCEecccchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChh-----h
Confidence            99998743   34667999999999999999999998865432   2233444567889999999987777665     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      .||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||++++|++|++
T Consensus       133 ~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i  210 (220)
T cd03263         133 TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKL  210 (220)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEE
Confidence            6999999999999999999999999999999999999999999999986 599999999975 57789999999999999


Q ss_pred             EEecCHhHH
Q 005545          317 IYSGRAAQV  325 (691)
Q Consensus       317 v~~G~~~~~  325 (691)
                      ++.|+++++
T Consensus       211 ~~~~~~~~~  219 (220)
T cd03263         211 RCIGSPQEL  219 (220)
T ss_pred             EecCCHHHc
Confidence            999988764

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1.3e-43  Score=367.32  Aligned_cols=218  Identities=32%  Similarity=0.515  Sum_probs=188.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i   60 (250)
T PRK11264          3 AIEVKNLVKKFHG---------------------QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE-QPEAGTI   60 (250)
T ss_pred             cEEEeceEEEECC---------------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEE
Confidence            5899999999861                     35899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545          159 TYNGRQFSS------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR  226 (691)
Q Consensus       159 ~~~G~~~~~------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~  226 (691)
                      .++|+++..            ..++.++|++|++.+++.+||+||+.++....  .....++..++++++++.+||.+..
T Consensus        61 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~  138 (250)
T PRK11264         61 RVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIV--KGEPKEEATARARELLAKVGLAGKE  138 (250)
T ss_pred             EECCEEccccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchh
Confidence            999988641            23568999999999999999999998754211  1223444556788999999998776


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.+     +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus       139 ~~~~-----~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d  212 (250)
T PRK11264        139 TSYP-----RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVAD  212 (250)
T ss_pred             hCCh-----hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcC
Confidence            6655     479999999999999999999999999999999999999999999999877999999999964 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++++|++|++++.|+++++.
T Consensus       213 ~i~~l~~G~i~~~~~~~~~~  232 (250)
T PRK11264        213 RAIFMDQGRIVEQGPAKALF  232 (250)
T ss_pred             EEEEEECCEEEEeCCHHHHh
Confidence            99999999999999988774

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.5e-43  Score=364.76  Aligned_cols=217  Identities=27%  Similarity=0.499  Sum_probs=188.9

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~---------------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~   59 (240)
T PRK09493          2 IEFKNVSKHFGP---------------------TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE-EITSGDLI   59 (240)
T ss_pred             EEEEeEEEEECC---------------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            789999998851                     35999999999999999999999999999999999976 57799999


Q ss_pred             ECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          160 YNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       160 ~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      ++|.++..      ..++.++|++|++.+++.+||+||+.+.....  ......+..+++.++++.+||++..++.+   
T Consensus        60 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~---  134 (240)
T PRK09493         60 VDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP---  134 (240)
T ss_pred             ECCEECCcCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh---
Confidence            99998752      24568999999999999999999998764211  12234445567889999999987777655   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus       135 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~  211 (240)
T PRK09493        135 --SELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDK  211 (240)
T ss_pred             --hhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence              469999999999999999999999999999999999999999999999877999999999965 57789999999999


Q ss_pred             CeEEEecCHhHHH
Q 005545          314 GSPIYSGRAAQVM  326 (691)
Q Consensus       314 G~iv~~G~~~~~~  326 (691)
                      |++++.|+.+++.
T Consensus       212 G~i~~~g~~~~~~  224 (240)
T PRK09493        212 GRIAEDGDPQVLI  224 (240)
T ss_pred             CEEEeeCCHHHHh
Confidence            9999999988764

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=6.6e-44  Score=364.19  Aligned_cols=216  Identities=26%  Similarity=0.397  Sum_probs=183.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC----CCCc
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR----GKFS  155 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~----~~~~  155 (691)
                      |+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|+..    ++.+
T Consensus         1 i~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~   59 (227)
T cd03260           1 IELRDLNVYYGD---------------------KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDE   59 (227)
T ss_pred             CEEEEEEEEcCC---------------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCC
Confidence            468899998851                     358999999999999999999999999999999999761    4679


Q ss_pred             eEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545          156 GKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV  229 (691)
Q Consensus       156 G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~  229 (691)
                      |+|.++|+++..      ..++.++|++|++.++ .+||+||+.++...+.  .....+..++++++++.+||.+..++.
T Consensus        60 G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~  136 (227)
T cd03260          60 GEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDR  136 (227)
T ss_pred             eEEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence            999999998742      2456899999999888 7999999988654321  112223456788999999998766654


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +.   +++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+.++||+++
T Consensus       137 ~~---~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~  211 (227)
T cd03260         137 LH---ALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTA  211 (227)
T ss_pred             CC---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEE
Confidence            30   2579999999999999999999999999999999999999999999999887 99999999964 5778999999


Q ss_pred             EecCCeEEEecCHhH
Q 005545          310 VLSEGSPIYSGRAAQ  324 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~  324 (691)
                      +|++|++++.|++++
T Consensus       212 ~l~~G~i~~~g~~~~  226 (227)
T cd03260         212 FLLNGRLVEFGPTEQ  226 (227)
T ss_pred             EEeCCEEEEecCccc
Confidence            999999999998765

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=8.9e-44  Score=366.17  Aligned_cols=220  Identities=30%  Similarity=0.490  Sum_probs=185.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|..                    ++.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   59 (241)
T cd03256           1 IEVENLSKTYPN--------------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV-EPTSGSVL   59 (241)
T ss_pred             CEEeeEEEecCC--------------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEE
Confidence            468899988851                    135999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL-----PKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      ++|+++..       ..++.++|++|++.+++.+||+||+.+......     .......+..++++++++.++|.+..+
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  139 (241)
T cd03256          60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAY  139 (241)
T ss_pred             ECCEeccccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhC
Confidence            99998742       245689999999999999999999987532110     001112234457888999999987666


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||
T Consensus       140 ~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d  213 (241)
T cd03256         140 QRA-----DQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYAD  213 (241)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence            655     47999999999999999999999999999999999999999999999986 4899999999975 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++++|++|++++.|+++++.
T Consensus       214 ~v~~l~~G~i~~~~~~~~~~  233 (241)
T cd03256         214 RIVGLKDGRIVFDGPPAELT  233 (241)
T ss_pred             EEEEEECCEEEeecCHHHhh
Confidence            99999999999999988763

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-43  Score=370.19  Aligned_cols=217  Identities=27%  Similarity=0.416  Sum_probs=187.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                    .+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus         4 ~l~~~~l~~~~~~--------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   62 (274)
T PRK13647          4 IIEVEDLHFRYKD--------------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIY-LPQRGRV   62 (274)
T ss_pred             eEEEEEEEEEeCC--------------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCceEE
Confidence            5899999999851                    134899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    ..++.+||++|++. .++..||.||+.|.....   ...+.+..++++++++.+||.+..++.+   
T Consensus        63 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~---  136 (274)
T PRK13647         63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPP---  136 (274)
T ss_pred             EECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCh---
Confidence            999998753    34568999999973 445689999998864321   2344455567899999999987777765   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        ..|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+.++||++++|++
T Consensus       137 --~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~  213 (274)
T PRK13647        137 --YHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKE  213 (274)
T ss_pred             --hhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence              469999999999999999999999999999999999999999999999877999999999964 57789999999999


Q ss_pred             CeEEEecCHhHH
Q 005545          314 GSPIYSGRAAQV  325 (691)
Q Consensus       314 G~iv~~G~~~~~  325 (691)
                      |++++.|+++++
T Consensus       214 G~i~~~g~~~~~  225 (274)
T PRK13647        214 GRVLAEGDKSLL  225 (274)
T ss_pred             CEEEEECCHHHh
Confidence            999999998654

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=1.1e-43  Score=389.35  Aligned_cols=220  Identities=29%  Similarity=0.463  Sum_probs=191.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|.                     .+.+|+|+||++++||+++|+||||||||||||+|+|++ ++.+|+|
T Consensus         3 ~L~~~nls~~y~---------------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll-~p~sG~I   60 (402)
T PRK09536          3 MIDVSDLSVEFG---------------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTL-TPTAGTV   60 (402)
T ss_pred             eEEEeeEEEEEC---------------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCC-CCCCcEE
Confidence            589999999986                     245999999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    ..++++|||+|++.+++.+||+||+.++....... .....+..++++++++.+||.+..++.+   
T Consensus        61 ~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~---  137 (402)
T PRK09536         61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPV---  137 (402)
T ss_pred             EECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCCh---
Confidence            999998753    45678999999999988999999998764211000 1012344567899999999998887765   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.|||||||||+|||||+++|++|||||||+|||+.++.+++++|++++++|+|||+++|++. ++.++|||+++|++
T Consensus       138 --~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~  214 (402)
T PRK09536        138 --TSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLAD  214 (402)
T ss_pred             --hhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEEC
Confidence              579999999999999999999999999999999999999999999999877899999999964 68899999999999


Q ss_pred             CeEEEecCHhHHH
Q 005545          314 GSPIYSGRAAQVM  326 (691)
Q Consensus       314 G~iv~~G~~~~~~  326 (691)
                      |++++.|++++++
T Consensus       215 G~iv~~G~~~ev~  227 (402)
T PRK09536        215 GRVRAAGPPADVL  227 (402)
T ss_pred             CEEEEecCHHHHh
Confidence            9999999999853

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=2.2e-43  Score=369.83  Aligned_cols=219  Identities=21%  Similarity=0.427  Sum_probs=189.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|.                     ++.+|+|+||+|++||+++|+||||||||||+++|+|+. ++.+|+
T Consensus         6 ~~l~~~~l~~~~~---------------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~   63 (269)
T PRK11831          6 NLVDMRGVSFTRG---------------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI-APDHGE   63 (269)
T ss_pred             ceEEEeCeEEEEC---------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCce
Confidence            4699999999885                     135899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545          158 ITYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       158 I~~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      |.++|+++..       ..++.++|++|++.+++.+||.||+.+.....  ......+..+++.++++.+||.+..++.+
T Consensus        64 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~  141 (269)
T PRK11831         64 ILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREH--TQLPAPLLHSTVMMKLEAVGLRGAAKLMP  141 (269)
T ss_pred             EEECCEEccccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHcCChhhhhCCh
Confidence            9999998742       13567999999999999999999998764321  11234444567888999999988777765


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                           ..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++ ..+.++||+++
T Consensus       142 -----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~  215 (269)
T PRK11831        142 -----SELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAY  215 (269)
T ss_pred             -----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEE
Confidence                 469999999999999999999999999999999999999999999999865 89999999996 45788999999


Q ss_pred             EecCCeEEEecCHhHHH
Q 005545          310 VLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~  326 (691)
                      +|++|++++.|+++++.
T Consensus       216 ~l~~G~i~~~g~~~~~~  232 (269)
T PRK11831        216 IVADKKIVAHGSAQALQ  232 (269)
T ss_pred             EEECCEEEEeCCHHHHh
Confidence            99999999999988764

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-43  Score=372.63  Aligned_cols=232  Identities=27%  Similarity=0.426  Sum_probs=192.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+....                ..+.+|+|||++|++||+++|+||||||||||+++|+|++ .+.+|+|
T Consensus         2 ~l~~~~l~~~y~~~~~----------------~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   64 (290)
T PRK13634          2 DITFQKVEHRYQYKTP----------------FERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLL-QPTSGTV   64 (290)
T ss_pred             EEEEEEEEEEECCCCc----------------ccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEE
Confidence            3899999999963210                1135999999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545          159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN  227 (691)
Q Consensus       159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~  227 (691)
                      .++|+++..        ..++.+|||+|++  .++ ..||+||+.|+....   ..+.++..++++++++.+||. +..+
T Consensus        65 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~  140 (290)
T PRK13634         65 TIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLA  140 (290)
T ss_pred             EECCEECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhh
Confidence            999998741        3456899999986  455 479999999875422   234555566889999999996 4556


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++ |.|||++||++. .+.++||
T Consensus       141 ~~~-----~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~d  214 (290)
T PRK13634        141 RSP-----FELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYAD  214 (290)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence            554     579999999999999999999999999999999999999999999999864 899999999964 6788999


Q ss_pred             EEEEecCCeEEEecCHhHHHH---HhhhcCCCCC
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD---YFGSIGYVPG  337 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~  337 (691)
                      ||++|++|++++.|+++++.+   .+...+..+|
T Consensus       215 rv~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~  248 (290)
T PRK13634        215 QIVVMHKGTVFLQGTPREIFADPDELEAIGLDLP  248 (290)
T ss_pred             EEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence            999999999999999988753   2334454433

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=2.8e-43  Score=378.78  Aligned_cols=235  Identities=25%  Similarity=0.428  Sum_probs=194.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ++.|+++||+++|+...+..++        .+..+...+|+||||+|++||+++|+|+||||||||+++|+|++ .+.+|
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~--------~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~-~p~~G   76 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWF--------WQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLV-KATDG   76 (331)
T ss_pred             CceEEEeCeEEEECCCCccccc--------cccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCc
Confidence            4579999999999742211000        00112346999999999999999999999999999999999987 46799


Q ss_pred             EEEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545          157 KITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCR  226 (691)
Q Consensus       157 ~I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~  226 (691)
                      +|.++|+++..       ..++.++||+|++  .++|.+||.||+.+...... ...++++..++++++++.+||. +..
T Consensus        77 ~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~-~~~~~~~~~~~~~~~l~~vgl~~~~~  155 (331)
T PRK15079         77 EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYH-PKLSRQEVKDRVKAMMLKVGLLPNLI  155 (331)
T ss_pred             EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHHcCCChHHh
Confidence            99999998742       2456899999997  58899999999988654321 1245566677889999999994 345


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~  305 (691)
                      ++.+     .+|||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.++|
T Consensus       156 ~~~p-----~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~  229 (331)
T PRK15079        156 NRYP-----HEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHIS  229 (331)
T ss_pred             cCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhC
Confidence            5544     579999999999999999999999999999999999999999999999874 899999999964 577899


Q ss_pred             CEEEEecCCeEEEecCHhHHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |+|++|++|++++.|+++++.+
T Consensus       230 dri~vl~~G~ive~g~~~~i~~  251 (331)
T PRK15079        230 DRVLVMYLGHAVELGTYDEVYH  251 (331)
T ss_pred             CEEEEEECCEEEEEcCHHHHHc
Confidence            9999999999999999988853

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.9e-43  Score=364.52  Aligned_cols=217  Identities=28%  Similarity=0.530  Sum_probs=187.4

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+..                    +.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~~--------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   59 (242)
T cd03295           1 IEFENVTKRYGGG--------------------KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI-EPTSGEIF   59 (242)
T ss_pred             CEEEEEEEEeCCc--------------------ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEE
Confidence            4688999988620                    34899999999999999999999999999999999977 47799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--cccccccCC
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--CRNSVVGGP  233 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~  233 (691)
                      ++|+++..    ..++.++|++|++.+++.+||+||+.+....+   ....++..++++++++.+||.+  ..++.+   
T Consensus        60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~---  133 (242)
T cd03295          60 IDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP---  133 (242)
T ss_pred             ECCeEcCcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh---
Confidence            99998743    34568999999999999999999998765432   2234445567889999999985  555544   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                        +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+++|++++|+
T Consensus       134 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~  210 (242)
T cd03295         134 --HELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMK  210 (242)
T ss_pred             --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence              579999999999999999999999999999999999999999999999874 899999999974 5778999999999


Q ss_pred             CCeEEEecCHhHHH
Q 005545          313 EGSPIYSGRAAQVM  326 (691)
Q Consensus       313 ~G~iv~~G~~~~~~  326 (691)
                      +|++++.|+++++.
T Consensus       211 ~G~i~~~~~~~~~~  224 (242)
T cd03295         211 NGEIVQVGTPDEIL  224 (242)
T ss_pred             CCEEEEecCHHHHH
Confidence            99999999988764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=100.00  E-value=1.3e-43  Score=360.40  Aligned_cols=214  Identities=31%  Similarity=0.528  Sum_probs=183.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+                     .+.+|+|+||++++||++||+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   58 (222)
T cd03224           1 LEVENLNAGYG---------------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL-PPRSGSIR   58 (222)
T ss_pred             CEEeeEEeecC---------------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            46889998875                     135899999999999999999999999999999999987 46799999


Q ss_pred             ECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCccccccccCC
Q 005545          160 YNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL-GLTRCRNSVVGGP  233 (691)
Q Consensus       160 ~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~  233 (691)
                      ++|+++..    . .++.++|++|++.+++.+|++||+.+.....   .  ..+..++++++++.+ ++.+..++.+   
T Consensus        59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~--~~~~~~~~~~~l~~~~~l~~~~~~~~---  130 (222)
T cd03224          59 FDGRDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYAR---R--RAKRKARLERVYELFPRLKERRKQLA---  130 (222)
T ss_pred             ECCEEcCCCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhc---C--chhHHHHHHHHHHHHHhhhhhhhCch---
Confidence            99988743    1 2567999999999999999999998865432   1  122344567788888 5766666655   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus       131 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~  207 (222)
T cd03224         131 --GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLER  207 (222)
T ss_pred             --hhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeC
Confidence              469999999999999999999999999999999999999999999999877899999999964 57899999999999


Q ss_pred             CeEEEecCHhHHH
Q 005545          314 GSPIYSGRAAQVM  326 (691)
Q Consensus       314 G~iv~~G~~~~~~  326 (691)
                      |++++.|+++++.
T Consensus       208 G~i~~~~~~~~~~  220 (222)
T cd03224         208 GRVVLEGTAAELL  220 (222)
T ss_pred             CeEEEeCCHHHHh
Confidence            9999999887764

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.3e-44  Score=358.29  Aligned_cols=222  Identities=29%  Similarity=0.494  Sum_probs=196.0

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..++.+||+.++.                     ...+++||||++++||+++||||||||||||+|+|+|.+ +|++|+
T Consensus         3 ~lL~v~~l~k~FG---------------------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~-~P~~G~   60 (250)
T COG0411           3 PLLEVRGLSKRFG---------------------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFY-KPSSGT   60 (250)
T ss_pred             ceeeeccceeecC---------------------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccc-cCCCce
Confidence            3567778777664                     467999999999999999999999999999999999987 578999


Q ss_pred             EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhc--------CCCC-CCHHHHHHHHHHHHHHcCCC
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLR--------LPKK-LTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~--------~~~~-~~~~~~~~~v~~~l~~lgL~  223 (691)
                      |.++|++++.     ..+..++--||...+|++|||.||+..++..+        .+.. ...++..+++.++|+.+||.
T Consensus        61 v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~  140 (250)
T COG0411          61 VIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLG  140 (250)
T ss_pred             EEECCcccCCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCc
Confidence            9999999864     24668999999999999999999999875432        1111 13456678899999999999


Q ss_pred             ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHH
Q 005545          224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLY  302 (691)
Q Consensus       224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~  302 (691)
                      +.+|++.|     +||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|+++++ .|.||+++.||+. .+.
T Consensus       141 ~~a~~~A~-----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm  214 (250)
T COG0411         141 ELADRPAG-----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVM  214 (250)
T ss_pred             hhhcchhh-----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHh
Confidence            99999886     4999999999999999999999999999999999999999999999998 4799999999964 689


Q ss_pred             hcCCEEEEecCCeEEEecCHhHHHH
Q 005545          303 RMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       303 ~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .+||||+||+.|+++.+|+++++.+
T Consensus       215 ~l~dri~Vl~~G~~IAeG~P~eV~~  239 (250)
T COG0411         215 GLADRIVVLNYGEVIAEGTPEEVRN  239 (250)
T ss_pred             hhccEEEeccCCcCcccCCHHHHhc
Confidence            9999999999999999999999853

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-43  Score=370.98  Aligned_cols=228  Identities=25%  Similarity=0.414  Sum_probs=193.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+..                  ..+.+|+|+|++|++||++||+||||||||||+++|+|++ .+.+|+|
T Consensus         4 ~l~~~~l~~~~~~~------------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   64 (279)
T PRK13650          4 IIEVKNLTFKYKED------------------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLL-EAESGQI   64 (279)
T ss_pred             eEEEEeEEEEcCCC------------------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence            58999999999621                  0135899999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    ..++.+|||+|++. .++.+||+||+.|+....   ..+.++..++++++++.+||.+..+..+   
T Consensus        65 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~---  138 (279)
T PRK13650         65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP---  138 (279)
T ss_pred             EECCEECCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc---
Confidence            999998853    34678999999973 677789999998865322   3455566678899999999987777665   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                        +.||||||||++|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||++. .+ ..||++++|+
T Consensus       139 --~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~-~~-~~~dri~~l~  214 (279)
T PRK13650        139 --ARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD-EV-ALSDRVLVMK  214 (279)
T ss_pred             --ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEEEEEE
Confidence              469999999999999999999999999999999999999999999999875 999999999975 45 5899999999


Q ss_pred             CCeEEEecCHhHHHH---HhhhcCCC
Q 005545          313 EGSPIYSGRAAQVMD---YFGSIGYV  335 (691)
Q Consensus       313 ~G~iv~~G~~~~~~~---~f~~~g~~  335 (691)
                      +|+++..|+++++.+   .+...|+.
T Consensus       215 ~G~i~~~g~~~~~~~~~~~~~~~~~~  240 (279)
T PRK13650        215 NGQVESTSTPRELFSRGNDLLQLGLD  240 (279)
T ss_pred             CCEEEEECCHHHHHcChHHHHHcCCC
Confidence            999999999988753   23344544

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=100.00  E-value=1.1e-43  Score=371.98  Aligned_cols=211  Identities=28%  Similarity=0.457  Sum_probs=183.2

Q ss_pred             CccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----h----ccccEEEEcc
Q 005545          107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----S----LKRKTGFVTQ  178 (691)
Q Consensus       107 ~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~----~~~~igyv~Q  178 (691)
                      .++++.+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++..    .    .++.++|++|
T Consensus        31 ~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~-~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q  109 (269)
T cd03294          31 LKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLI-EPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ  109 (269)
T ss_pred             hhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccChhhhhhhhcCcEEEEec
Confidence            44566778999999999999999999999999999999999977 4679999999998742    1    1357999999


Q ss_pred             CCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCE
Q 005545          179 DDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSC  258 (691)
Q Consensus       179 ~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~i  258 (691)
                      ++.+++.+||+||+.+.....   .....+..++++++++.+||.+..++.+     +.|||||||||+|||||+.+|++
T Consensus       110 ~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~Gq~qrv~lAral~~~p~i  181 (269)
T cd03294         110 SFALLPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYP-----DELSGGMQQRVGLARALAVDPDI  181 (269)
T ss_pred             CcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCE
Confidence            999999999999998865432   2233445567889999999988777766     46999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          259 LLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       259 LlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+++++.+
T Consensus       182 llLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~~  250 (269)
T cd03294         182 LLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEILT  250 (269)
T ss_pred             EEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHHh
Confidence            9999999999999999999999999764 899999999964 5788999999999999999999887743

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=1.7e-43  Score=358.89  Aligned_cols=209  Identities=33%  Similarity=0.550  Sum_probs=178.1

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+...                 +.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~~~-----------------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~   62 (218)
T cd03255           1 IELKNLSKTYGGGG-----------------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD-RPTSGEVR   62 (218)
T ss_pred             CeEeeeEEEecCCC-----------------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc-CCCceeEE
Confidence            46899999986210                 0145999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh-------h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          160 YNGRQFSS-------S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       160 ~~G~~~~~-------~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      ++|+++..       . .++.++|++|++.+++.+||+||+.+....+   .....+..++++++++.+||.+..++.+ 
T Consensus        63 ~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-  138 (218)
T cd03255          63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-  138 (218)
T ss_pred             ECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-
Confidence            99998742       1 2457999999999999999999999875432   2233444567889999999987777655 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. ++. .||++++
T Consensus       139 ----~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~v~~  212 (218)
T cd03255         139 ----SELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPE-LAE-YADRIIE  212 (218)
T ss_pred             ----hhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHh-hhcEEEE
Confidence                46999999999999999999999999999999999999999999999987 5899999999975 454 9999999


Q ss_pred             ecCCeE
Q 005545          311 LSEGSP  316 (691)
Q Consensus       311 L~~G~i  316 (691)
                      |++|++
T Consensus       213 l~~G~i  218 (218)
T cd03255         213 LRDGKI  218 (218)
T ss_pred             eeCCcC
Confidence            999974

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.8e-43  Score=374.79  Aligned_cols=233  Identities=22%  Similarity=0.389  Sum_probs=193.2

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+....                ..+.+|+|+|++|++||++||+|+||||||||+++|+|++ ++.+|+
T Consensus        20 ~~l~~~nl~~~y~~~~~----------------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~-~p~~G~   82 (320)
T PRK13631         20 IILRVKNLYCVFDEKQE----------------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLI-KSKYGT   82 (320)
T ss_pred             ceEEEEeEEEEeCCCCc----------------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCe
Confidence            46999999999963210                1235999999999999999999999999999999999987 477999


Q ss_pred             EEECCEeCCh--------------------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH
Q 005545          158 ITYNGRQFSS--------------------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM  215 (691)
Q Consensus       158 I~~~G~~~~~--------------------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~  215 (691)
                      |+++|.++..                    ..++.+|||+|++  .+++ .||+||+.|+....   ..+.++..+++++
T Consensus        83 I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~  158 (320)
T PRK13631         83 IQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKF  158 (320)
T ss_pred             EEECCEEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHH
Confidence            9999987632                    2467899999987  4665 59999998865321   2345555678899


Q ss_pred             HHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEe
Q 005545          216 VIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI  294 (691)
Q Consensus       216 ~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~  294 (691)
                      +++.+||. +..++.+     ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|
T Consensus       159 ~l~~~gL~~~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~Tiiivt  233 (320)
T PRK13631        159 YLNKMGLDDSYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVIT  233 (320)
T ss_pred             HHHHcCCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence            99999996 4555443     57999999999999999999999999999999999999999999999987899999999


Q ss_pred             CCCchHHHhcCCEEEEecCCeEEEecCHhHHHH---HhhhcCCCCC
Q 005545          295 HQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD---YFGSIGYVPG  337 (691)
Q Consensus       295 H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~---~f~~~g~~~~  337 (691)
                      |++. .+.+.||++++|++|++++.|+++++..   .+...|...|
T Consensus       234 Hd~~-~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p  278 (320)
T PRK13631        234 HTME-HVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVP  278 (320)
T ss_pred             cCHH-HHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCC
Confidence            9964 5778999999999999999999998753   2334455433

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-43  Score=365.01  Aligned_cols=219  Identities=29%  Similarity=0.452  Sum_probs=185.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|..                    .+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~--------------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   60 (243)
T TIGR02315         2 LEVENLSKVYPN--------------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV-EPSSGSIL   60 (243)
T ss_pred             eEEEeeeeecCC--------------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCccEEE
Confidence            688999988851                    135899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcC--C---CCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL--P---KKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      ++|+++..       ..++.++|++|++.+++.+||+||+.++.....  .   ......+..+++.++++.+||.+..+
T Consensus        61 ~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  140 (243)
T TIGR02315        61 LEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAY  140 (243)
T ss_pred             ECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhc
Confidence            99998742       245689999999999999999999976431100  0   00112334567888999999987766


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||
T Consensus       141 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d  214 (243)
T TIGR02315       141 QRA-----DQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYAD  214 (243)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcC
Confidence            655     469999999999999999999999999999999999999999999999764 899999999965 5778999


Q ss_pred             EEEEecCCeEEEecCHhHH
Q 005545          307 KVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~  325 (691)
                      ++++|++|++++.|+++++
T Consensus       215 ~v~~l~~G~i~~~~~~~~~  233 (243)
T TIGR02315       215 RIVGLKAGEIVFDGAPSEL  233 (243)
T ss_pred             eEEEEECCEEEecCCHHHh
Confidence            9999999999999988775

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=1.5e-40  Score=414.74  Aligned_cols=227  Identities=26%  Similarity=0.435  Sum_probs=199.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...|+++||++.|+.+                   ++.+|+|+|+++++||+++|+||||||||||+|+|+|++ .|++|
T Consensus       926 ~~~L~I~nLsK~y~~~-------------------~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl-~PtsG  985 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPS-------------------GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLL-PPTSG  985 (2272)
T ss_pred             CceEEEEeEEEEecCC-------------------CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCC-CCCce
Confidence            4579999999999521                   246999999999999999999999999999999999987 47799


Q ss_pred             EEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          157 KITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       157 ~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      +|.++|+++..   ..|+.+||++|++.+++.+||+||+.+.++++   ..+.++.+++++++++.+||.+..++.++  
T Consensus       986 ~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-- 1060 (2272)
T TIGR01257       986 TVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-- 1060 (2272)
T ss_pred             EEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh--
Confidence            99999998853   35678999999999999999999999876654   23344556678999999999988887764  


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                         .|||||||||+||+||+.+|++|||||||+|||+.+++.+.++|++++ +|+|||++||++ +++..++||+++|++
T Consensus      1061 ---~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdm-dea~~laDrI~iL~~ 1135 (2272)
T TIGR01257      1061 ---DLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHM-DEADLLGDRIAIISQ 1135 (2272)
T ss_pred             ---hCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEEC
Confidence               699999999999999999999999999999999999999999999995 589999999996 467889999999999


Q ss_pred             CeEEEecCHhHHHHHhhhcCC
Q 005545          314 GSPIYSGRAAQVMDYFGSIGY  334 (691)
Q Consensus       314 G~iv~~G~~~~~~~~f~~~g~  334 (691)
                      |+++..|+++++.+.|+. ||
T Consensus      1136 GkL~~~Gs~~~Lk~~~g~-gy 1155 (2272)
T TIGR01257      1136 GRLYCSGTPLFLKNCFGT-GF 1155 (2272)
T ss_pred             CEEEEecCHHHHHHhcCC-cE
Confidence            999999999999887753 44

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=4.3e-44  Score=354.83  Aligned_cols=224  Identities=27%  Similarity=0.514  Sum_probs=207.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|++++|++++.                     .+.+++|+||++++|++++++|||||||||.+|+|.|++ .+++|+|
T Consensus         2 ~L~ie~vtK~Fg---------------------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILgll-e~~~G~I   59 (300)
T COG4152           2 ALEIEGVTKSFG---------------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLL-EPTEGEI   59 (300)
T ss_pred             ceEEecchhccC---------------------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccC-CccCceE
Confidence            467777776664                     467999999999999999999999999999999999988 4779999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI  238 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L  238 (691)
                      .++|.+++...+.+|||+|.+..||+.+||.|.|.|.+.++   ++++++.+++++.+|+++++......+|     ++|
T Consensus        60 ~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kI-----k~L  131 (300)
T COG4152          60 TWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKI-----KEL  131 (300)
T ss_pred             EEcCcchhhhhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchH-----HHh
Confidence            99999999888889999999999999999999999998875   7888999999999999999998887776     579


Q ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEE
Q 005545          239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIY  318 (691)
Q Consensus       239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~  318 (691)
                      |.|++|++.+..+++++|++++||||+|||||.+.+.+-+.+.+++++|.|||+++|.+ +.+.++||++++|++|+.|.
T Consensus       132 SKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~  210 (300)
T COG4152         132 SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRM-EHVEELCDRLLMLKKGQTVL  210 (300)
T ss_pred             hhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchH-HHHHHHhhhhheecCCceEE
Confidence            99999999999999999999999999999999999999999999999999999999996 56999999999999999999


Q ss_pred             ecCHhHHHHHhhhcC
Q 005545          319 SGRAAQVMDYFGSIG  333 (691)
Q Consensus       319 ~G~~~~~~~~f~~~g  333 (691)
                      +|+.+++..-|+.--
T Consensus       211 ~G~v~~ir~~~Gkk~  225 (300)
T COG4152         211 YGTVEDIRRSFGKKR  225 (300)
T ss_pred             eccHHHHHHhcCCce
Confidence            999999988666543

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=2e-43  Score=355.86  Aligned_cols=206  Identities=32%  Similarity=0.515  Sum_probs=180.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   58 (208)
T cd03268           1 LKTNDLTKTYGK---------------------KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI-KPDSGEIT   58 (208)
T ss_pred             CEEEEEEEEECC---------------------eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEE
Confidence            468999998851                     35999999999999999999999999999999999977 47799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|+++..  ..++.++|++|++.+++.+||+||+.+....+   ..    ..++++++++.++|.+..++.+     +.
T Consensus        59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~-----~~  126 (208)
T cd03268          59 FDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKV-----KG  126 (208)
T ss_pred             ECCCcccchHHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhH-----hh
Confidence            99987743  34567999999999999999999998865422   11    1346788999999988777665     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI  317 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv  317 (691)
                      |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|+++
T Consensus       127 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~  205 (208)
T cd03268         127 FSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLI  205 (208)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEE
Confidence            9999999999999999999999999999999999999999999999888899999999964 577899999999999998


Q ss_pred             Eec
Q 005545          318 YSG  320 (691)
Q Consensus       318 ~~G  320 (691)
                      +.|
T Consensus       206 ~~g  208 (208)
T cd03268         206 EEG  208 (208)
T ss_pred             ecC
Confidence            765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-43  Score=373.78  Aligned_cols=223  Identities=24%  Similarity=0.410  Sum_probs=188.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+...                .....+|+|+|++|++||++||+||||||||||+++|+|++ ++.+|+|
T Consensus         2 ~i~~~~l~~~y~~~~----------------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~-~p~~G~i   64 (305)
T PRK13651          2 QIKVKNIVKIFNKKL----------------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALL-LPDTGTI   64 (305)
T ss_pred             EEEEEEEEEEECCCC----------------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCcEE
Confidence            489999999996321                01235899999999999999999999999999999999987 4679999


Q ss_pred             EECCEeCC----------------------------hhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHH
Q 005545          159 TYNGRQFS----------------------------SSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEK  209 (691)
Q Consensus       159 ~~~G~~~~----------------------------~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~  209 (691)
                      +++|++..                            ...++.+|||+|++ ..+...||+||+.|+....   ...+++.
T Consensus        65 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~---~~~~~~~  141 (305)
T PRK13651         65 EWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM---GVSKEEA  141 (305)
T ss_pred             EEeceecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc---CCCHHHH
Confidence            99987541                            13466899999985 2333579999999875432   3455666


Q ss_pred             HHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc
Q 005545          210 IEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR  288 (691)
Q Consensus       210 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~  288 (691)
                      .++++++++.+||. +..++.+     ..|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+
T Consensus       142 ~~~~~~~l~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~  216 (305)
T PRK13651        142 KKRAAKYIELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK  216 (305)
T ss_pred             HHHHHHHHHHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence            77899999999996 5666655     47999999999999999999999999999999999999999999999987899


Q ss_pred             EEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       289 tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |||++|||+. .+.+.|||+++|++|++++.|+++++..
T Consensus       217 tiiivtHd~~-~~~~~adrv~vl~~G~i~~~g~~~~~~~  254 (305)
T PRK13651        217 TIILVTHDLD-NVLEWTKRTIFFKDGKIIKDGDTYDILS  254 (305)
T ss_pred             EEEEEeeCHH-HHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence            9999999964 5789999999999999999999998753

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=351.11  Aligned_cols=217  Identities=30%  Similarity=0.508  Sum_probs=187.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+..|.                     ...+|+|||+++++||+++|+|+||+|||||||+|+|+. ++.+|+|
T Consensus         3 mL~v~~l~~~YG---------------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~-~~~~G~I   60 (237)
T COG0410           3 MLEVENLSAGYG---------------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLV-RPRSGRI   60 (237)
T ss_pred             ceeEEeEeeccc---------------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeeE
Confidence            588999998886                     246999999999999999999999999999999999977 4569999


Q ss_pred             EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccC
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-LTRCRNSVVGG  232 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~  232 (691)
                      .++|++++.     ..|+.++||||...+||.|||+|||..++..+..    ++......+++.+.|- |.+.++++.| 
T Consensus        61 ~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-  135 (237)
T COG0410          61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-  135 (237)
T ss_pred             EECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-
Confidence            999999964     3577999999999999999999999987654311    1112222677777774 6667777766 


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                          .|||||||.++|||||+.+|++|+|||||.||-|.-.++|.+.+++++++ |.||+++-++. ..+.+++||.++|
T Consensus       136 ----~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvl  210 (237)
T COG0410         136 ----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVL  210 (237)
T ss_pred             ----CCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEE
Confidence                49999999999999999999999999999999999999999999999975 78999998885 5688999999999


Q ss_pred             cCCeEEEecCHhHHHH
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      .+|+++++|+.+++.+
T Consensus       211 e~Griv~~G~~~eL~~  226 (237)
T COG0410         211 ENGRIVLSGTAAELLA  226 (237)
T ss_pred             eCCEEEEecCHHHHhc
Confidence            9999999999998853

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=100.00  E-value=3.9e-43  Score=358.46  Aligned_cols=220  Identities=48%  Similarity=0.768  Sum_probs=185.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCce
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSG  156 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G  156 (691)
                      .++|+||++.++...                 ..+.+|+|+|+++++||+++|+||||||||||+|+|+|+++.  +.+|
T Consensus         3 ~~~~~~~~~~~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G   65 (226)
T cd03234           3 VLPWWDVGLKAKNWN-----------------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG   65 (226)
T ss_pred             cceeecceeeeecCc-----------------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce
Confidence            367999999996311                 135699999999999999999999999999999999998741  6799


Q ss_pred             EEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-HHHHcCCCccccccccCCC
Q 005545          157 KITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-VIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       157 ~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~  234 (691)
                      +|.++|+++.. ..++.++|++|++.+++.+||+||+.+......+.....+...+++++ .++.+++.+..++.+    
T Consensus        66 ~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----  141 (226)
T cd03234          66 QILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV----  141 (226)
T ss_pred             EEEECCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc----
Confidence            99999998754 456789999999999999999999998754432222222233334555 899999887666554    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                       +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.++||++++|++|
T Consensus       142 -~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G  220 (226)
T cd03234         142 -KGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSG  220 (226)
T ss_pred             -cCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence             5799999999999999999999999999999999999999999999998778999999999755688999999999999


Q ss_pred             eEEEec
Q 005545          315 SPIYSG  320 (691)
Q Consensus       315 ~iv~~G  320 (691)
                      ++++.|
T Consensus       221 ~i~~~g  226 (226)
T cd03234         221 EIVYSG  226 (226)
T ss_pred             EEEecC
Confidence            999875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-43  Score=358.78  Aligned_cols=217  Identities=31%  Similarity=0.457  Sum_probs=183.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+...                 ..+.+|+|+||+|++||+++|+||||||||||+++|+|++ ++++|+
T Consensus         4 ~~l~~~~l~~~~~~~~-----------------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~   65 (233)
T PRK11629          4 ILLQCDNLCKRYQEGS-----------------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD-TPTSGD   65 (233)
T ss_pred             ceEEEEeEEEEcCCCC-----------------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCceE
Confidence            3699999999996210                 0135999999999999999999999999999999999977 477999


Q ss_pred             EEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545          158 ITYNGRQFSS----S---L-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV  229 (691)
Q Consensus       158 I~~~G~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~  229 (691)
                      |+++|+++..    .   . ++.++|++|++.+++.+||+||+.+....+   ....++..++++++++.+||.+..++.
T Consensus        66 i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~  142 (233)
T PRK11629         66 VIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHR  142 (233)
T ss_pred             EEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCC
Confidence            9999998753    1   2 257999999999999999999998865432   223344556788999999998777665


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      +     +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. ++.. +|++
T Consensus       143 ~-----~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~-~~~~-~~~~  215 (233)
T PRK11629        143 P-----SELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQ-LAKR-MSRQ  215 (233)
T ss_pred             h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHh-hCEE
Confidence            5     46999999999999999999999999999999999999999999999976 5899999999975 4544 6899


Q ss_pred             EEecCCeEEEecCH
Q 005545          309 VVLSEGSPIYSGRA  322 (691)
Q Consensus       309 ~~L~~G~iv~~G~~  322 (691)
                      ++|++|++++.|+.
T Consensus       216 ~~l~~G~i~~~~~~  229 (233)
T PRK11629        216 LEMRDGRLTAELSL  229 (233)
T ss_pred             EEEECCEEEEEecc
Confidence            99999999988763

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=3.2e-43  Score=355.77  Aligned_cols=206  Identities=33%  Similarity=0.527  Sum_probs=179.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                    ++.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~--------------------~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~   60 (214)
T TIGR02673         2 IEFHNVSKAYPG--------------------GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL-TPSRGQVR   60 (214)
T ss_pred             EEEEeeeEEeCC--------------------CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            789999999841                    135999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..       ..++.++|++|++.+++.+||.||+.+....+   .....+..++++++++.++|.+..++.+  
T Consensus        61 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  135 (214)
T TIGR02673        61 IAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP--  135 (214)
T ss_pred             ECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh--
Confidence            99998742       24568999999999999999999998875432   2233444567889999999987666655  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|+
T Consensus       136 ---~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~  211 (214)
T TIGR02673       136 ---EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILD  211 (214)
T ss_pred             ---hhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEec
Confidence               469999999999999999999999999999999999999999999999877999999999974 5778999999999


Q ss_pred             CCe
Q 005545          313 EGS  315 (691)
Q Consensus       313 ~G~  315 (691)
                      +|+
T Consensus       212 ~G~  214 (214)
T TIGR02673       212 DGR  214 (214)
T ss_pred             CCC
Confidence            985

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-43  Score=361.22  Aligned_cols=218  Identities=28%  Similarity=0.491  Sum_probs=189.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i   60 (241)
T PRK10895          3 TLTAKNLAKAYKG---------------------RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV-PRDAGNI   60 (241)
T ss_pred             eEEEeCcEEEeCC---------------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            5889999998851                     35999999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|.++..     ..++.++|++|++.+++.+||.||+.+....+  .....++..++++++++.+||.+..++.+   
T Consensus        61 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---  135 (241)
T PRK10895         61 IIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMG---  135 (241)
T ss_pred             EECCEECCCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcch---
Confidence            999998742     23568999999999999999999998754322  12233445567889999999987666554   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+.||++++|++
T Consensus       136 --~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~  212 (241)
T PRK10895        136 --QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQ  212 (241)
T ss_pred             --hhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeC
Confidence              579999999999999999999999999999999999999999999999878999999999964 57899999999999


Q ss_pred             CeEEEecCHhHHH
Q 005545          314 GSPIYSGRAAQVM  326 (691)
Q Consensus       314 G~iv~~G~~~~~~  326 (691)
                      |++++.|+++++.
T Consensus       213 G~i~~~~~~~~~~  225 (241)
T PRK10895        213 GHLIAHGTPTEIL  225 (241)
T ss_pred             CeEEeeCCHHHHh
Confidence            9999999988764

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.9e-43  Score=369.74  Aligned_cols=222  Identities=25%  Similarity=0.454  Sum_probs=188.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+....                ..+.+|+|||++|++||+++|+||||||||||+++|+|++ .+.+|+|
T Consensus         2 ~l~~~~l~~~y~~~~~----------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~-~p~~G~i   64 (286)
T PRK13646          2 TIRFDNVSYTYQKGTP----------------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL-KPTTGTV   64 (286)
T ss_pred             EEEEEEEEEEECCCCc----------------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence            4899999999962110                1135999999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545          159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN  227 (691)
Q Consensus       159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~  227 (691)
                      .++|+++..        ..++.+|||+|++  .+++ .||.||+.|+....   ..+.++..++++++++.+||. +..+
T Consensus        65 ~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~  140 (286)
T PRK13646         65 TVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMS  140 (286)
T ss_pred             EECCEECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence            999998742        3567899999986  4565 59999999865321   234555667889999999996 5666


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     +.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.++|+++++ .|+|||++||++. .+.++||
T Consensus       141 ~~~-----~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~d  214 (286)
T PRK13646        141 QSP-----FQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYAD  214 (286)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCC
Confidence            554     57999999999999999999999999999999999999999999999986 4899999999964 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++++|++|++++.|+++++.+
T Consensus       215 ri~~l~~G~i~~~g~~~~~~~  235 (286)
T PRK13646        215 EVIVMKEGSIVSQTSPKELFK  235 (286)
T ss_pred             EEEEEECCEEEEECCHHHHHh
Confidence            999999999999999988754

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=3.8e-43  Score=355.07  Aligned_cols=207  Identities=29%  Similarity=0.473  Sum_probs=179.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                    .+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~--------------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   59 (214)
T cd03292           1 IEFINVTKTYPN--------------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE-LPTSGTIR   59 (214)
T ss_pred             CEEEEEEEEeCC--------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEE
Confidence            468899998851                    135899999999999999999999999999999999976 47799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..       ..++.++|++|++.+++.+|++||+.+....+   ....++..++++++++.+||++..++.+  
T Consensus        60 ~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  134 (214)
T cd03292          60 VNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALP--  134 (214)
T ss_pred             ECCEEcccCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCh--
Confidence            99998742       24568999999999999999999998875432   2234445567889999999987777655  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         ++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+
T Consensus       135 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~  210 (214)
T cd03292         135 ---AELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALE  210 (214)
T ss_pred             ---hhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence               469999999999999999999999999999999999999999999999877999999999964 5778999999999


Q ss_pred             CCeE
Q 005545          313 EGSP  316 (691)
Q Consensus       313 ~G~i  316 (691)
                      +|++
T Consensus       211 ~G~~  214 (214)
T cd03292         211 RGKL  214 (214)
T ss_pred             CCcC
Confidence            9974

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=8.2e-43  Score=358.40  Aligned_cols=216  Identities=34%  Similarity=0.539  Sum_probs=186.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                     +.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         2 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i~   59 (236)
T TIGR03864         2 LEVAGLSFAYGA---------------------RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY-VAQEGQIS   59 (236)
T ss_pred             EEEEeeEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEE
Confidence            688999998851                     35999999999999999999999999999999999976 57799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|.++..   ..++.++|++|++.+++.+|++||+.+....+   .....+..++++++++.+||.+..++.++     
T Consensus        60 ~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----  131 (236)
T TIGR03864        60 VAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----  131 (236)
T ss_pred             ECCEEcccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----
Confidence            99988743   23357999999999888999999998765432   22344445678899999999877776654     


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      .||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||++||++.. +. .+|++++|++|+
T Consensus       132 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~  209 (236)
T TIGR03864       132 ELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGR  209 (236)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCe
Confidence            6999999999999999999999999999999999999999999999985 58999999999754 54 599999999999


Q ss_pred             EEEecCHhHHHH
Q 005545          316 PIYSGRAAQVMD  327 (691)
Q Consensus       316 iv~~G~~~~~~~  327 (691)
                      +++.|+++++.+
T Consensus       210 i~~~~~~~~~~~  221 (236)
T TIGR03864       210 VLADGAAAELRG  221 (236)
T ss_pred             EEEeCCHHHHHH
Confidence            999999887754

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=100.00  E-value=7.3e-43  Score=361.20  Aligned_cols=216  Identities=25%  Similarity=0.454  Sum_probs=185.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC----
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~----  154 (691)
                      .|+++||+++|..                     +.+|+|+||+|++||+++|+|+||||||||+++|+|++. +.    
T Consensus         1 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~-p~~~~~   58 (247)
T TIGR00972         1 AIEIENLNLFYGE---------------------KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND-LVPGVR   58 (247)
T ss_pred             CEEEEEEEEEECC---------------------eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC-CCcCCC
Confidence            3789999999861                     248999999999999999999999999999999999874 55    


Q ss_pred             -ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----
Q 005545          155 -SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT----  223 (691)
Q Consensus       155 -~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----  223 (691)
                       +|+|.++|+++..      ..++.++|++|++.+++ +||+||+.+....+  ......+..++++++++.+||.    
T Consensus        59 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  135 (247)
T TIGR00972        59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLH--GIKDKKELDEIVEESLKKAALWDEVK  135 (247)
T ss_pred             CceEEEECCEEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCcchh
Confidence             9999999998742      24568999999999988 99999998865432  1123445556788999999997    


Q ss_pred             ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                      +..++.+     +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. ++.+
T Consensus       136 ~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~-~~~~  208 (247)
T TIGR00972       136 DRLHDSA-----LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQ-QAAR  208 (247)
T ss_pred             hHhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHH-HHHH
Confidence            5555544     579999999999999999999999999999999999999999999999874 89999999964 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++|++++|++|++++.|+++++.
T Consensus       209 ~~d~i~~l~~G~i~~~~~~~~~~  231 (247)
T TIGR00972       209 ISDRTAFFYDGELVEYGPTEQIF  231 (247)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999988774

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-43  Score=374.19  Aligned_cols=230  Identities=27%  Similarity=0.404  Sum_probs=193.2

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.|....+.  +         ...+...+|+||||+|++||++||+|+||||||||+++|+|++ ++.+|+
T Consensus         4 ~~l~v~nl~~~~~~~~~~--~---------~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~-~p~~G~   71 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGL--F---------KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIE-TPTGGE   71 (327)
T ss_pred             ceEEEeeeEEEEcCCCCc--c---------ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCC-CCCCcE
Confidence            469999999999742110  0         0011246999999999999999999999999999999999987 467999


Q ss_pred             EEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccc
Q 005545          158 ITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRN  227 (691)
Q Consensus       158 I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~  227 (691)
                      |.++|+++..       ..++.++||+|++  .+.|.+||.+++.......  ....+.+..+++.++++.+||.+ ..+
T Consensus        72 i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~  149 (327)
T PRK11308         72 LYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYD  149 (327)
T ss_pred             EEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhc
Confidence            9999998742       2456899999998  5899999999997754432  12345566678999999999963 455


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     ++|||||||||+|||||+.+|++||+||||+|||..++.+++++|++++++ |.|||++|||.. .+.++||
T Consensus       150 ~~p-----~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~ad  223 (327)
T PRK11308        150 RYP-----HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIAD  223 (327)
T ss_pred             CCC-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCC
Confidence            544     579999999999999999999999999999999999999999999999874 999999999964 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++|++++.|+.+++.+
T Consensus       224 rv~vm~~G~ive~g~~~~~~~  244 (327)
T PRK11308        224 EVMVMYLGRCVEKGTKEQIFN  244 (327)
T ss_pred             EEEEEECCEEEEECCHHHHhc
Confidence            999999999999999998854

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.6e-43  Score=369.35  Aligned_cols=222  Identities=30%  Similarity=0.482  Sum_probs=190.6

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .|..|+++||+++|+.                    ++.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+
T Consensus         2 ~~~~l~~~~l~~~~~~--------------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~-~p~~   60 (283)
T PRK13636          2 EDYILKVEELNYNYSD--------------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGIL-KPSS   60 (283)
T ss_pred             CCceEEEEeEEEEeCC--------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence            3457999999999951                    135999999999999999999999999999999999977 4779


Q ss_pred             eEEEECCEeCC------hhccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          156 GKITYNGRQFS------SSLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       156 G~I~~~G~~~~------~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      |+|.++|+++.      ...++.+||++|++. .+...||+||+.+.....   ..+..+..++++++++.+||.+..++
T Consensus        61 G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~  137 (283)
T PRK13636         61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDK  137 (283)
T ss_pred             cEEEECCEECCCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhC
Confidence            99999999873      135678999999973 334579999998764321   23455555678999999999887776


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .+     +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||+
T Consensus       138 ~~-----~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dr  211 (283)
T PRK13636        138 PT-----HCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDN  211 (283)
T ss_pred             Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCE
Confidence            65     579999999999999999999999999999999999999999999999875 899999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++..
T Consensus       212 i~~l~~G~i~~~g~~~~~~~  231 (283)
T PRK13636        212 VFVMKEGRVILQGNPKEVFA  231 (283)
T ss_pred             EEEEECCEEEEeCCHHHHhc
Confidence            99999999999999988754

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=100.00  E-value=9.4e-43  Score=362.54  Aligned_cols=219  Identities=28%  Similarity=0.421  Sum_probs=188.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      -.|+++||++.|+.                     +.+|+|+||++++||+++|+|+||||||||+++|+|++ ++.+|+
T Consensus         4 ~~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~   61 (257)
T PRK10619          4 NKLNVIDLHKRYGE---------------------HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGS   61 (257)
T ss_pred             ccEEEeeeEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeE
Confidence            35899999999861                     35999999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCCh-----------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc
Q 005545          158 ITYNGRQFSS-----------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL  220 (691)
Q Consensus       158 I~~~G~~~~~-----------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l  220 (691)
                      |.++|+++..                 ..++.++|++|++.+++.+||+||+.++.... . .....+..+++.++++.+
T Consensus        62 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~  139 (257)
T PRK10619         62 IVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV-L-GLSKQEARERAVKYLAKV  139 (257)
T ss_pred             EEECCEEcccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHc
Confidence            9999987631                 23568999999999999999999998754211 1 223445566788999999


Q ss_pred             CCCccc-cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545          221 GLTRCR-NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       221 gL~~~~-~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      ||.+.. ++.+     +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. 
T Consensus       140 gl~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-  213 (257)
T PRK10619        140 GIDERAQGKYP-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-  213 (257)
T ss_pred             CCChhhhhCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-
Confidence            997653 4433     579999999999999999999999999999999999999999999999877999999999964 


Q ss_pred             HHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          300 RLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       300 ~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      .+.++||++++|++|++++.|+++++.
T Consensus       214 ~~~~~~d~i~~l~~G~i~~~~~~~~~~  240 (257)
T PRK10619        214 FARHVSSHVIFLHQGKIEEEGAPEQLF  240 (257)
T ss_pred             HHHHhcCEEEEEECCEEEEeCCHHHhh
Confidence            577899999999999999999988764

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=5.1e-43  Score=360.06  Aligned_cols=216  Identities=27%  Similarity=0.478  Sum_probs=185.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+
T Consensus         4 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~   61 (237)
T PRK11614          4 VMLSFDKVSAHYGK---------------------IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP-RATSGR   61 (237)
T ss_pred             cEEEEEeEEEeeCC---------------------ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCce
Confidence            36999999998851                     35899999999999999999999999999999999976 577999


Q ss_pred             EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccc
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL-GLTRCRNSVVG  231 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg  231 (691)
                      |.++|+++..     ..++.++|++|++.+++.+||.||+.++....     ...+..++++++++.+ ++.+..++.+ 
T Consensus        62 i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-  135 (237)
T PRK11614         62 IVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-  135 (237)
T ss_pred             EEECCEecCCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-
Confidence            9999998743     24567999999999999999999998754221     1222334567778877 4765555544 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                          +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|
T Consensus       136 ----~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l  210 (237)
T PRK11614        136 ----GTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVL  210 (237)
T ss_pred             ----hhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEE
Confidence                469999999999999999999999999999999999999999999999888999999999964 578999999999


Q ss_pred             cCCeEEEecCHhHHH
Q 005545          312 SEGSPIYSGRAAQVM  326 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~  326 (691)
                      ++|++++.|+++++.
T Consensus       211 ~~G~i~~~~~~~~~~  225 (237)
T PRK11614        211 ENGHVVLEDTGDALL  225 (237)
T ss_pred             eCCEEEeeCCHHHHh
Confidence            999999999998874

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=1.1e-42  Score=374.13  Aligned_cols=229  Identities=29%  Similarity=0.446  Sum_probs=192.3

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--C
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--F  154 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~--~  154 (691)
                      ...|+++||+++|....                 +...+|+||||+|++||++||+|+||||||||+++|+|++.+.  .
T Consensus        10 ~~~L~i~~l~~~~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~   72 (330)
T PRK09473         10 DALLDVKDLRVTFSTPD-----------------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRI   72 (330)
T ss_pred             CceEEEeCeEEEEecCC-----------------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCC
Confidence            35799999999996321                 1245999999999999999999999999999999999987432  4


Q ss_pred             ceEEEECCEeCCh----h---cc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545          155 SGKITYNGRQFSS----S---LK-RKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR  224 (691)
Q Consensus       155 ~G~I~~~G~~~~~----~---~~-~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~  224 (691)
                      +|+|.++|+++..    .   .| +.++||+|++  .++|.+|+.+++.......  ...++++..+++.++++.+||.+
T Consensus        73 sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~--~~~~~~~~~~~~~~~L~~vgL~~  150 (330)
T PRK09473         73 GGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLH--KGMSKAEAFEESVRMLDAVKMPE  150 (330)
T ss_pred             CeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCCC
Confidence            9999999998742    1   22 4799999998  6889999999997654332  12355666678899999999975


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHh
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~  303 (691)
                      ..+. . +.++++|||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++ |.|+|++|||+. .+.+
T Consensus       151 ~~~~-~-~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~  227 (330)
T PRK09473        151 ARKR-M-KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAG  227 (330)
T ss_pred             hHHH-h-cCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHH
Confidence            3322 1 2355789999999999999999999999999999999999999999999999875 899999999964 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++++|++|++++.|+++++..
T Consensus       228 ~~Dri~vm~~G~ive~g~~~~i~~  251 (330)
T PRK09473        228 ICDKVLVMYAGRTMEYGNARDVFY  251 (330)
T ss_pred             hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999998854

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-42  Score=367.69  Aligned_cols=222  Identities=28%  Similarity=0.435  Sum_probs=188.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||++.|.....                ..+.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus         2 ~i~~~~l~~~~~~~~~----------------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~-~p~~G~i   64 (287)
T PRK13641          2 SIKFENVDYIYSPGTP----------------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALL-KPSSGTI   64 (287)
T ss_pred             EEEEEEEEEEcCCCCC----------------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence            5889999999962110                0135999999999999999999999999999999999977 4789999


Q ss_pred             EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545          159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN  227 (691)
Q Consensus       159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~  227 (691)
                      .++|+++..        ..++.++|++|++  .++ .+||.||+.++....   ....++..++++++++.+||. +..+
T Consensus        65 ~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~  140 (287)
T PRK13641         65 TIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLIS  140 (287)
T ss_pred             EECCEECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhh
Confidence            999998732        2356899999997  355 589999998765422   234555566789999999996 5666


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+     +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus       141 ~~~-----~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~  214 (287)
T PRK13641        141 KSP-----FELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADD  214 (287)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCE
Confidence            655     469999999999999999999999999999999999999999999999877999999999964 57899999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++..
T Consensus       215 v~~l~~G~i~~~g~~~~~~~  234 (287)
T PRK13641        215 VLVLEHGKLIKHASPKEIFS  234 (287)
T ss_pred             EEEEECCEEEEeCCHHHHhc
Confidence            99999999999999888753

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-42  Score=358.51  Aligned_cols=216  Identities=30%  Similarity=0.472  Sum_probs=186.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||++.|..                     +.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i   59 (242)
T PRK11124          2 SIQLNGINCFYGA---------------------HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE-MPRSGTL   59 (242)
T ss_pred             EEEEEeeEEEECC---------------------eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence            5899999999861                     35999999999999999999999999999999999976 5679999


Q ss_pred             EECCEeCC----------hhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          159 TYNGRQFS----------SSLKRKTGFVTQDDVLYPHLTVLETLSYAA-LLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       159 ~~~G~~~~----------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      .++|+++.          ...++.++|++|++.+++.+||.||+.+.. ...   .....+..+++.++++.+||.+..+
T Consensus        60 ~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~  136 (242)
T PRK11124         60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYAD  136 (242)
T ss_pred             EECCEecccccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhh
Confidence            99999762          124568999999999999999999997532 211   1233444567889999999987777


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+     +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. ++.+++|+
T Consensus       137 ~~~-----~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~  210 (242)
T PRK11124        137 RFP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASR  210 (242)
T ss_pred             CCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCE
Confidence            655     479999999999999999999999999999999999999999999999877999999999975 56788999


Q ss_pred             EEEecCCeEEEecCHhHH
Q 005545          308 VVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~  325 (691)
                      +++|++|++++.|+++++
T Consensus       211 i~~l~~g~i~~~~~~~~~  228 (242)
T PRK11124        211 VVYMENGHIVEQGDASCF  228 (242)
T ss_pred             EEEEECCEEEEeCCHHHh
Confidence            999999999999988764

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=5.2e-43  Score=353.63  Aligned_cols=208  Identities=33%  Similarity=0.549  Sum_probs=180.5

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|..                     +.+|+|+||++++| +++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 i~~~~~~~~~~~---------------------~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   57 (211)
T cd03264           1 LQLENLTKRYGK---------------------KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLT-PPSSGTIR   57 (211)
T ss_pred             CEEEEEEEEECC---------------------EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCC-CCCccEEE
Confidence            478999998851                     35999999999999 99999999999999999999977 46799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++.+||+||+.+....+   ...+++..++++++++.+||.+..++.+     .
T Consensus        58 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~  129 (211)
T cd03264          58 IDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKI-----G  129 (211)
T ss_pred             ECCCccccchHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCch-----h
Confidence            99987643   34678999999999999999999998865432   2233444567889999999987777665     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      .||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|++
T Consensus       130 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i  207 (211)
T cd03264         130 SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKL  207 (211)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEE
Confidence            6999999999999999999999999999999999999999999999986 589999999964 57789999999999999


Q ss_pred             EEec
Q 005545          317 IYSG  320 (691)
Q Consensus       317 v~~G  320 (691)
                      ++.|
T Consensus       208 ~~~g  211 (211)
T cd03264         208 VFEG  211 (211)
T ss_pred             EecC
Confidence            8765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-42  Score=361.58  Aligned_cols=218  Identities=24%  Similarity=0.398  Sum_probs=185.4

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----  152 (691)
                      ...|+++||++.|..                     +.+|+|+||+|++||++||+|+||||||||+++|+|+.++    
T Consensus        10 ~~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~   68 (258)
T PRK14268         10 QPQIKVENLNLWYGE---------------------KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC   68 (258)
T ss_pred             ceeEEEeeeEEEeCC---------------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCC
Confidence            347999999998851                     3589999999999999999999999999999999997643    


Q ss_pred             CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC---
Q 005545          153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---  223 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---  223 (691)
                      +++|+|.++|+++..      ..++.++|++|++.+++ +||+||+.+....+   ..+.++..++++++++.+++.   
T Consensus        69 ~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~  144 (258)
T PRK14268         69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDET  144 (258)
T ss_pred             CcceEEEECCEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcch
Confidence            379999999988642      24568999999998887 89999999865332   223444455788899999984   


Q ss_pred             -ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545          224 -RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY  302 (691)
Q Consensus       224 -~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~  302 (691)
                       +..++.+     +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.
T Consensus       145 ~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~  217 (258)
T PRK14268        145 SDRLKSPA-----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAA  217 (258)
T ss_pred             hhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHH
Confidence             3334433     57999999999999999999999999999999999999999999999975 799999999964 577


Q ss_pred             hcCCEEEEecCCeEEEecCHhHHH
Q 005545          303 RMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       303 ~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++||++++|++|++++.|+++++.
T Consensus       218 ~~~d~i~~l~~G~i~~~~~~~~~~  241 (258)
T PRK14268        218 RISDYTGFFLMGELIEFGQTRQIF  241 (258)
T ss_pred             HhCCEEEEEECCEEEEeCCHHHHh
Confidence            899999999999999999998874

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-42  Score=365.39  Aligned_cols=220  Identities=28%  Similarity=0.437  Sum_probs=190.1

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.|...                   .+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus         4 ~~l~~~~l~~~~~~~-------------------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~-~p~~G~   63 (279)
T PRK13635          4 EIIRVEHISFRYPDA-------------------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLL-LPEAGT   63 (279)
T ss_pred             ceEEEEEEEEEeCCC-------------------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcE
Confidence            469999999999521                   135899999999999999999999999999999999987 467999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      |.++|+++..    ..++.+||++|++. +++..||.||+.+.....   ....++..++++++++.+||.+..++.+  
T Consensus        64 i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~--  138 (279)
T PRK13635         64 ITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREP--  138 (279)
T ss_pred             EEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCc--
Confidence            9999998753    34568999999973 666789999998865332   2344555677899999999988777766  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                         +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+. .||++++|
T Consensus       139 ---~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~-~~~-~~d~i~~l  213 (279)
T PRK13635        139 ---HRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLD-EAA-QADRVIVM  213 (279)
T ss_pred             ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHH-HHH-cCCEEEEE
Confidence               469999999999999999999999999999999999999999999999875 899999999975 454 59999999


Q ss_pred             cCCeEEEecCHhHHHH
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      ++|++++.|+.+++..
T Consensus       214 ~~G~i~~~g~~~~~~~  229 (279)
T PRK13635        214 NKGEILEEGTPEEIFK  229 (279)
T ss_pred             ECCEEEEECCHHHHhc
Confidence            9999999999988754

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-42  Score=360.80  Aligned_cols=221  Identities=23%  Similarity=0.396  Sum_probs=187.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.|+.                     +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+
T Consensus         4 ~~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~   61 (255)
T PRK11300          4 PLLSVSGLMMRFGG---------------------LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY-KPTGGT   61 (255)
T ss_pred             ceEEEeeEEEEECC---------------------EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc-CCCcce
Confidence            46999999998851                     35999999999999999999999999999999999976 577999


Q ss_pred             EEECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-----------C-CCCHHHHHHHHHHHHHHc
Q 005545          158 ITYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-----------K-KLTREEKIEQAEMVIMEL  220 (691)
Q Consensus       158 I~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-----------~-~~~~~~~~~~v~~~l~~l  220 (691)
                      |.++|+++..    . .+..++|++|++.+++.+||+||+.++......           . .....+..++++++++.+
T Consensus        62 i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  141 (255)
T PRK11300         62 ILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV  141 (255)
T ss_pred             EEECCEECCCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC
Confidence            9999998743    1 234699999999999999999999986421100           0 001123345678899999


Q ss_pred             CCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCch
Q 005545          221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSS  299 (691)
Q Consensus       221 gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~  299 (691)
                      ||.+..++.+     +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. 
T Consensus       142 gl~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-  215 (255)
T PRK11300        142 GLLEHANRQA-----GNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-  215 (255)
T ss_pred             ChhhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-
Confidence            9987777665     469999999999999999999999999999999999999999999999875 899999999964 


Q ss_pred             HHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          300 RLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       300 ~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++.++||++++|++|++++.|+++++.
T Consensus       216 ~~~~~~d~i~~l~~g~i~~~~~~~~~~  242 (255)
T PRK11300        216 LVMGISDRIYVVNQGTPLANGTPEEIR  242 (255)
T ss_pred             HHHHhCCEEEEEECCeEEecCCHHHHh
Confidence            577899999999999999999988763

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.1e-42  Score=365.00  Aligned_cols=218  Identities=24%  Similarity=0.399  Sum_probs=186.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|..                     +.+|+|+|+++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus         1 ml~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   58 (271)
T PRK13638          1 MLATSDLWFRYQD---------------------EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLL-RPQKGAV   58 (271)
T ss_pred             CeEEEEEEEEcCC---------------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCccEE
Confidence            3789999999851                     34899999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh------hccccEEEEccCCCC-CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          159 TYNGRQFSS------SLKRKTGFVTQDDVL-YPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~------~~~~~igyv~Q~~~l-~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      .++|+++..      ..++.++||+|++.. +...|+.||+.+.....   ....++..++++++++.+||.+..++.+ 
T Consensus        59 ~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-  134 (271)
T PRK13638         59 LWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-  134 (271)
T ss_pred             EECCEEcccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-
Confidence            999998731      245679999999752 34568999998764322   2234444567888999999987777655 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                          +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|
T Consensus       135 ----~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l  209 (271)
T PRK13638        135 ----QCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVL  209 (271)
T ss_pred             ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence                469999999999999999999999999999999999999999999999877899999999964 577899999999


Q ss_pred             cCCeEEEecCHhHHHH
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      ++|++++.|+++++..
T Consensus       210 ~~G~i~~~g~~~~~~~  225 (271)
T PRK13638        210 RQGQILTHGAPGEVFA  225 (271)
T ss_pred             ECCEEEEeCCHHHHhc
Confidence            9999999999988743

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=1.3e-42  Score=353.57  Aligned_cols=208  Identities=28%  Similarity=0.444  Sum_probs=180.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                    .+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   60 (222)
T PRK10908          2 IRFEHVSKAYLG--------------------GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE-RPSAGKIW   60 (222)
T ss_pred             EEEEeeEEEecC--------------------CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            789999999841                    135899999999999999999999999999999999977 57799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..       ..++.++|++|++.+++.+||+||+.+....+   ....++..++++++++.++|.+..++.+  
T Consensus        61 ~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  135 (222)
T PRK10908         61 FSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP--  135 (222)
T ss_pred             ECCEEcccCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc--
Confidence            99998742       14568999999999888999999998865432   2234444557888999999987666655  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         ..||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ++...+|++++|+
T Consensus       136 ---~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~  211 (222)
T PRK10908        136 ---IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLS  211 (222)
T ss_pred             ---hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence               469999999999999999999999999999999999999999999999877899999999965 5778999999999


Q ss_pred             CCeEE
Q 005545          313 EGSPI  317 (691)
Q Consensus       313 ~G~iv  317 (691)
                      +|+++
T Consensus       212 ~G~i~  216 (222)
T PRK10908        212 DGHLH  216 (222)
T ss_pred             CCEEc
Confidence            99975

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-42  Score=365.18  Aligned_cols=216  Identities=26%  Similarity=0.466  Sum_probs=187.1

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                    .+.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|+
T Consensus         2 l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~   60 (274)
T PRK13644          2 IRLENVSYSYPD--------------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLL-RPQKGKVL   60 (274)
T ss_pred             EEEEEEEEEcCC--------------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEE
Confidence            789999999851                    134899999999999999999999999999999999977 47799999


Q ss_pred             ECCEeCCh-----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          160 YNGRQFSS-----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       160 ~~G~~~~~-----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      ++|.++..     ..++.++|++|++. .+...||.||+.+.....   ..+..+..++++++++.+||.+..++.+   
T Consensus        61 ~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~---  134 (274)
T PRK13644         61 VSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSP---  134 (274)
T ss_pred             ECCEECCccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCc---
Confidence            99998742     34568999999975 356689999998765322   2345555667889999999988777665   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+ ..||++++|++
T Consensus       135 --~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~-~~-~~~d~v~~l~~  210 (274)
T PRK13644        135 --KTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLE-EL-HDADRIIVMDR  210 (274)
T ss_pred             --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-hhCCEEEEEEC
Confidence              469999999999999999999999999999999999999999999999878999999999975 45 57999999999


Q ss_pred             CeEEEecCHhHHH
Q 005545          314 GSPIYSGRAAQVM  326 (691)
Q Consensus       314 G~iv~~G~~~~~~  326 (691)
                      |++++.|+++++.
T Consensus       211 G~i~~~g~~~~~~  223 (274)
T PRK13644        211 GKIVLEGEPENVL  223 (274)
T ss_pred             CEEEEECCHHHHh
Confidence            9999999998874

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=100.00  E-value=1.6e-42  Score=357.33  Aligned_cols=221  Identities=30%  Similarity=0.380  Sum_probs=184.2

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKI  158 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I  158 (691)
                      |+++||+++|+.                     +.+|+|+|++|++||+++|+||||||||||+|+|+|+.. ++.+|+|
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i   59 (243)
T TIGR01978         1 LKIKDLHVSVED---------------------KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTI   59 (243)
T ss_pred             CeEeeEEEEECC---------------------EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceE
Confidence            478999998851                     358999999999999999999999999999999999752 4779999


Q ss_pred             EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC--C--CCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545          159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP--K--KLTREEKIEQAEMVIMELGLT-RCRNS  228 (691)
Q Consensus       159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~  228 (691)
                      .++|+++..    . .+..++|++|++.+++.+|++|++.+.......  .  .....+..++++++++.+||. +..++
T Consensus        60 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  139 (243)
T TIGR01978        60 LFKGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNR  139 (243)
T ss_pred             EECCEecCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhccc
Confidence            999998743    2 234599999999999999999999876432110  0  112333456788999999997 34555


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc-CCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM-FDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~-~D~  307 (691)
                      .++    ..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... ||+
T Consensus       140 ~~~----~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~  214 (243)
T TIGR01978       140 SVN----EGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDY  214 (243)
T ss_pred             ccc----cCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCe
Confidence            443    249999999999999999999999999999999999999999999999878899999999975 56677 899


Q ss_pred             EEEecCCeEEEecCHhHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++|++++.|+++++.
T Consensus       215 i~~l~~G~i~~~g~~~~~~  233 (243)
T TIGR01978       215 VHVLLDGRIVKSGDVELAK  233 (243)
T ss_pred             EEEEeCCEEEEecCHHHhc
Confidence            9999999999999987553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-42  Score=359.83  Aligned_cols=217  Identities=29%  Similarity=0.486  Sum_probs=187.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+||+|++||+++|+||||||||||+|+|+|++ .+.+|+|.
T Consensus         1 i~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (252)
T TIGR03005         1 VRFSDVTKRFGI---------------------LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE-PIDEGQIQ   58 (252)
T ss_pred             CEEEEEEEEeCC---------------------eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            478999998851                     35899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh-----------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005545          160 YNGRQFSS-----------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL  222 (691)
Q Consensus       160 ~~G~~~~~-----------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL  222 (691)
                      ++|+++..                 ..++.++|++|++.+++.+||.||+.++....  ......+..++++++++.+|+
T Consensus        59 ~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl  136 (252)
T TIGR03005        59 VEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGL  136 (252)
T ss_pred             ECCEEccccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCC
Confidence            99987631                 24668999999999999999999998753211  122344455678899999999


Q ss_pred             CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545          223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL  301 (691)
Q Consensus       223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i  301 (691)
                      .+..++.+     +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. ++
T Consensus       137 ~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~  210 (252)
T TIGR03005       137 ADKADHMP-----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FA  210 (252)
T ss_pred             hhHhhcCh-----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence            87766554     579999999999999999999999999999999999999999999999874 899999999964 57


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      .+++|++++|++|++++.|+.+++.
T Consensus       211 ~~~~d~i~~l~~G~i~~~g~~~~~~  235 (252)
T TIGR03005       211 REFADRVCFFDKGRIVEQGKPDEIF  235 (252)
T ss_pred             HHhcCEEEEEECCEEEEeCCHHHHh
Confidence            7899999999999999999988774

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=100.00  E-value=1.8e-42  Score=357.06  Aligned_cols=219  Identities=28%  Similarity=0.442  Sum_probs=186.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                     +.+|+|+||++++||+++|+|||||||||||++|+|.+ ++.+|+|
T Consensus         2 ~i~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i   59 (242)
T TIGR03411         2 ILYLEGLSVSFDG---------------------FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKT-RPDEGSV   59 (242)
T ss_pred             eEEEEeeEEEcCC---------------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCeE
Confidence            4789999998851                     35899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC--C---CCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP--K---KLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      .++|.++..     ..++.++|++|++.+++.+||+||+.+.......  .   ....++..++++++++.+|+.+..++
T Consensus        60 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~  139 (242)
T TIGR03411        60 LFGGTDLTGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADR  139 (242)
T ss_pred             EECCeecCCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcC
Confidence            999988742     1245799999999999999999999886431100  0   01123345678899999999877776


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .+     +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++
T Consensus       140 ~~-----~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i  212 (242)
T TIGR03411       140 LA-----GLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKV  212 (242)
T ss_pred             Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEE
Confidence            55     46999999999999999999999999999999999999999999999976 689999999964 578899999


Q ss_pred             EEecCCeEEEecCHhHHH
Q 005545          309 VVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~  326 (691)
                      ++|++|++++.|+++++.
T Consensus       213 ~~l~~g~~~~~~~~~~~~  230 (242)
T TIGR03411       213 TVLHQGSVLAEGSLDQVQ  230 (242)
T ss_pred             EEEECCeEEeeCCHHHHh
Confidence            999999999999988763

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-42  Score=357.93  Aligned_cols=219  Identities=26%  Similarity=0.420  Sum_probs=186.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~  154 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||+++|+|++.+    +.
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~   61 (250)
T PRK14247          3 KIEIRDLKVSFGQ---------------------VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV   61 (250)
T ss_pred             eEEEEeeEEEECC---------------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCC
Confidence            5899999998851                     3589999999999999999999999999999999998743    36


Q ss_pred             ceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----cc
Q 005545          155 SGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR----CR  226 (691)
Q Consensus       155 ~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----~~  226 (691)
                      +|+|.++|+++..    ..++.++|++|++.+++.+||.||+.+....+. ......+..++++++++.+||.+    ..
T Consensus        62 ~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~  140 (250)
T PRK14247         62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRL  140 (250)
T ss_pred             ceEEEECCEECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhh
Confidence            9999999998742    346789999999988889999999988653221 11133445567889999999864    23


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.     +.+|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ |+|+|++||++. .+.+.||
T Consensus       141 ~~~-----~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d  213 (250)
T PRK14247        141 DAP-----AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISD  213 (250)
T ss_pred             cCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcC
Confidence            443     357999999999999999999999999999999999999999999999965 799999999975 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++++|++|++++.|+++++.
T Consensus       214 ~i~~l~~G~i~~~g~~~~~~  233 (250)
T PRK14247        214 YVAFLYKGQIVEWGPTREVF  233 (250)
T ss_pred             EEEEEECCeEEEECCHHHHH
Confidence            99999999999999998874

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.8e-42  Score=360.18  Aligned_cols=213  Identities=29%  Similarity=0.447  Sum_probs=184.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++++|+|
T Consensus         1 ml~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   58 (255)
T PRK11248          1 MLQISHLYADYGG---------------------KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV-PYQHGSI   58 (255)
T ss_pred             CEEEEEEEEEeCC---------------------eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            3789999998851                     35899999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI  238 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L  238 (691)
                      .++|+++.. .++.++|++|++.+++.+||.||+.+....+   .....+..++++++++.+||.+..++.+     ..|
T Consensus        59 ~~~g~~~~~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~L  129 (255)
T PRK11248         59 TLDGKPVEG-PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQL  129 (255)
T ss_pred             EECCEECCC-CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhC
Confidence            999998753 3346899999999999999999998764322   2334445567889999999987776655     469


Q ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec--CCe
Q 005545          239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS--EGS  315 (691)
Q Consensus       239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~--~G~  315 (691)
                      ||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++. .+.++||++++|+  +|+
T Consensus       130 SgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~  208 (255)
T PRK11248        130 SGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGR  208 (255)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcE
Confidence            99999999999999999999999999999999999999999999965 5899999999965 5788999999998  599


Q ss_pred             EEEecCHh
Q 005545          316 PIYSGRAA  323 (691)
Q Consensus       316 iv~~G~~~  323 (691)
                      ++..++.+
T Consensus       209 i~~~~~~~  216 (255)
T PRK11248        209 VVERLPLN  216 (255)
T ss_pred             EEEEecCC
Confidence            99887654

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=6.3e-43  Score=351.60  Aligned_cols=191  Identities=32%  Similarity=0.476  Sum_probs=165.5

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-hccccEEEEccCCC-CCCCCCHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-SLKRKTGFVTQDDV-LYPHLTVLE  190 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~-l~~~lTV~E  190 (691)
                      +.+|+|+||++++||+++|+|||||||||||++|+|++ ++.+|+|.++|+++.. ..++.++|++|++. .+..+||+|
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~tv~e   91 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI-KESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDSVRE   91 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhccHHH
Confidence            35899999999999999999999999999999999977 4789999999998753 34568999999974 334679999


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545          191 TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS  270 (691)
Q Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~  270 (691)
                      |+.+.....   .  .  ..++++++++.+||.+..++.+     +.||||||||++|||+|+.+|++|+|||||+|||+
T Consensus        92 ~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  159 (205)
T cd03226          92 ELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHP-----LSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY  159 (205)
T ss_pred             HHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCc-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence            998754321   1  1  1246788999999988777665     46999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE
Q 005545          271 TTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI  317 (691)
Q Consensus       271 ~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv  317 (691)
                      .++..+.+.|++++++|+|||++||++. ++.++||++++|++|+++
T Consensus       160 ~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv  205 (205)
T cd03226         160 KNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV  205 (205)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence            9999999999999877999999999965 577899999999999975

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-42  Score=360.99  Aligned_cols=217  Identities=32%  Similarity=0.498  Sum_probs=186.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~p~~G~i   59 (258)
T PRK13548          2 MLEARNLSVRLGG---------------------RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL-SPDSGEV   59 (258)
T ss_pred             eEEEEeEEEEeCC---------------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence            4889999999861                     35899999999999999999999999999999999976 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      .++|.++..    ..++.++|++|++.+++.+||+||+.+.....   ....++..++++++++.+||.+..++.+    
T Consensus        60 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~----  132 (258)
T PRK13548         60 RLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDY----  132 (258)
T ss_pred             EECCEEcccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCc----
Confidence            999988743    34567999999998888899999998754211   1122334456788999999987777765    


Q ss_pred             CcccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCE
Q 005545          235 FRGISGGERKRVSIGQEML------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                       ..|||||||||+||++|+      .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+.++||+
T Consensus       133 -~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~  210 (258)
T PRK13548        133 -PQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADR  210 (258)
T ss_pred             -ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCE
Confidence             469999999999999999      5999999999999999999999999999998 57899999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++|++++.|+++++.
T Consensus       211 i~~l~~G~i~~~~~~~~~~  229 (258)
T PRK13548        211 IVLLHQGRLVADGTPAEVL  229 (258)
T ss_pred             EEEEECCEEEeeCCHHHHh
Confidence            9999999999999988764

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1.1e-42  Score=351.57  Aligned_cols=207  Identities=32%  Similarity=0.536  Sum_probs=178.9

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (213)
T cd03262           1 IEIKNLHKSFGD---------------------FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE-EPDSGTII   58 (213)
T ss_pred             CEEEEEEEEECC---------------------eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            468999998861                     35899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          160 YNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       160 ~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      ++|+++..      ..++.++|++|++.+++.+|++||+.+.....  .....++..++++++++.+|+.+..++.+   
T Consensus        59 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---  133 (213)
T cd03262          59 IDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP---  133 (213)
T ss_pred             ECCEECCccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc---
Confidence            99998731      34678999999999999999999998764211  12234445567889999999987777665   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus       134 --~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~  210 (213)
T cd03262         134 --AQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDD  210 (213)
T ss_pred             --cccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeC
Confidence              469999999999999999999999999999999999999999999999887899999999964 57789999999999


Q ss_pred             CeE
Q 005545          314 GSP  316 (691)
Q Consensus       314 G~i  316 (691)
                      |++
T Consensus       211 g~i  213 (213)
T cd03262         211 GRI  213 (213)
T ss_pred             CcC
Confidence            974

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.1e-42  Score=371.60  Aligned_cols=224  Identities=22%  Similarity=0.352  Sum_probs=189.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCc
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---KFS  155 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---~~~  155 (691)
                      .|+++||++.|....                 +...+|+||||+|++||++||+|+||||||||+++|+|++.+   +.+
T Consensus         3 ~L~v~~l~~~~~~~~-----------------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~   65 (326)
T PRK11022          3 LLNVDKLSVHFGDES-----------------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMA   65 (326)
T ss_pred             eEEEeCeEEEECCCC-----------------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcc
Confidence            589999999996321                 124699999999999999999999999999999999998743   369


Q ss_pred             eEEEECCEeCCh----hc----cccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 005545          156 GKITYNGRQFSS----SL----KRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-  224 (691)
Q Consensus       156 G~I~~~G~~~~~----~~----~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-  224 (691)
                      |+|.++|+++..    ..    ++.++||+|++  .++|.+||.+++.......  ....+++..+++.++++.+||.+ 
T Consensus        66 G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~  143 (326)
T PRK11022         66 EKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDP  143 (326)
T ss_pred             eEEEECCEECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCCh
Confidence            999999998742    11    24699999998  4889999999887654322  12345566778999999999974 


Q ss_pred             --cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHH
Q 005545          225 --CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRL  301 (691)
Q Consensus       225 --~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i  301 (691)
                        ..+.     .+.+|||||||||+|||||+.+|++||+||||+|||+.++.+++++|+++++ .|.|+|++|||+. .+
T Consensus       144 ~~~l~~-----~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~  217 (326)
T PRK11022        144 ASRLDV-----YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LV  217 (326)
T ss_pred             HHHHhC-----CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence              2333     3467999999999999999999999999999999999999999999999987 5899999999964 57


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .+++|+|++|++|++++.|+++++.+
T Consensus       218 ~~~adri~vm~~G~ive~g~~~~~~~  243 (326)
T PRK11022        218 AEAAHKIIVMYAGQVVETGKAHDIFR  243 (326)
T ss_pred             HHhCCEEEEEECCEEEEECCHHHHhh
Confidence            78999999999999999999998854

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-42  Score=357.61  Aligned_cols=219  Identities=27%  Similarity=0.421  Sum_probs=185.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~  154 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||+++|+|++++    +.
T Consensus         4 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~   62 (253)
T PRK14267          4 AIETVNLRVYYGS---------------------NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARV   62 (253)
T ss_pred             eEEEEeEEEEeCC---------------------eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCC
Confidence            5899999999851                     3589999999999999999999999999999999998743    25


Q ss_pred             ceEEEECCEeCC--h----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----
Q 005545          155 SGKITYNGRQFS--S----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR----  224 (691)
Q Consensus       155 ~G~I~~~G~~~~--~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----  224 (691)
                      +|+|.++|+++.  .    ..++.++|++|++.+++.+||.||+.++...+. .....++..++++++++.+||..    
T Consensus        63 ~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~  141 (253)
T PRK14267         63 EGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNG-LVKSKKELDERVEWALKKAALWDEVKD  141 (253)
T ss_pred             ceEEEECCEEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcC-ccCCHHHHHHHHHHHHHHcCCccchhh
Confidence            999999999874  1    345689999999999999999999987653221 11123444557888999999853    


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~  304 (691)
                      ..++.     ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++
T Consensus       142 ~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~  214 (253)
T PRK14267        142 RLNDY-----PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARV  214 (253)
T ss_pred             hhccC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhh
Confidence            23333     357999999999999999999999999999999999999999999999976 699999999964 57789


Q ss_pred             CCEEEEecCCeEEEecCHhHHH
Q 005545          305 FDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       305 ~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ||++++|++|++++.|+++++.
T Consensus       215 ~d~i~~l~~G~i~~~~~~~~~~  236 (253)
T PRK14267        215 SDYVAFLYLGKLIEVGPTRKVF  236 (253)
T ss_pred             CCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999988874

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=1.7e-42  Score=353.59  Aligned_cols=215  Identities=30%  Similarity=0.477  Sum_probs=177.5

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|....                 ....+|+|+|+++++||+++|+|||||||||||++|+|++ ++.+|+|.
T Consensus         2 l~~~~v~~~~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   63 (228)
T cd03257           2 LEVKNLSVSFPTGG-----------------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL-KPTSGSII   63 (228)
T ss_pred             eEEEeeeEeccCCC-----------------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            78999999986210                 0125899999999999999999999999999999999977 57799999


Q ss_pred             ECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-HHHHHHHcCCC-ccccc
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLT-RCRNS  228 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~  228 (691)
                      ++|+++..       ..++.++|++|++  .+++.+||+||+.+......+ . ...+..+. ++++++.+++. +..++
T Consensus        64 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~  141 (228)
T cd03257          64 FDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNR  141 (228)
T ss_pred             ECCEEccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhC
Confidence            99998742       2456899999998  467789999999876433211 1 12222222 36889999995 45565


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .+     ..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+.||+
T Consensus       142 ~~-----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~  215 (228)
T cd03257         142 YP-----HELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADR  215 (228)
T ss_pred             Cc-----hhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCe
Confidence            54     469999999999999999999999999999999999999999999999875 899999999974 57779999


Q ss_pred             EEEecCCeEEEec
Q 005545          308 VVVLSEGSPIYSG  320 (691)
Q Consensus       308 v~~L~~G~iv~~G  320 (691)
                      +++|++|+++..|
T Consensus       216 i~~l~~G~i~~~g  228 (228)
T cd03257         216 VAVMYAGKIVEEG  228 (228)
T ss_pred             EEEEeCCEEEecC
Confidence            9999999998765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-42  Score=361.14  Aligned_cols=226  Identities=28%  Similarity=0.453  Sum_probs=192.7

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-C---CCc
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-G---KFS  155 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~---~~~  155 (691)
                      |+++||+.+|....+                 ...+++||||++++||++||+|.|||||||+.++|+|+++ +   -.+
T Consensus         2 L~v~nL~v~f~~~~g-----------------~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~   64 (316)
T COG0444           2 LEVKNLSVSFPTDAG-----------------VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVG   64 (316)
T ss_pred             ceEeeeEEEEecCCc-----------------cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEee
Confidence            689999999985321                 3469999999999999999999999999999999999885 2   257


Q ss_pred             eEEEECCEeCCh----h---c-cccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHHHHcCCCc
Q 005545          156 GKITYNGRQFSS----S---L-KRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKL-TREEKIEQAEMVIMELGLTR  224 (691)
Q Consensus       156 G~I~~~G~~~~~----~---~-~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~-~~~~~~~~v~~~l~~lgL~~  224 (691)
                      |+|.++|+++.+    .   + .+.|+|||||+.  |.|.+||.+.+.-.....  ... .+++..+++.++|+.+||++
T Consensus        65 G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--~~~~~~~ea~~~a~~~L~~Vgi~~  142 (316)
T COG0444          65 GEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--GKGLSKKEAKERAIELLELVGIPD  142 (316)
T ss_pred             eEEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--hcchhhHHHHHHHHHHHHHcCCCC
Confidence            999999997632    1   2 247999999974  899999999887665432  222 46677889999999999986


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHh
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~  303 (691)
                      ...  +-+.++.+|||||||||.||.||+.+|++||+||||++||...+.+|+++|+++++ .|.++|++|||.. .+.+
T Consensus       143 ~~~--~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~  219 (316)
T COG0444         143 PER--RLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAE  219 (316)
T ss_pred             HHH--HHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence            421  22345678999999999999999999999999999999999999999999999997 6999999999964 6889


Q ss_pred             cCCEEEEecCCeEEEecCHhHHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +||||+||..|++|+.|+++++++
T Consensus       220 ~aDri~VMYaG~iVE~g~~~~i~~  243 (316)
T COG0444         220 IADRVAVMYAGRIVEEGPVEEIFK  243 (316)
T ss_pred             hcceEEEEECcEEEEeCCHHHHhc
Confidence            999999999999999999998854

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=1.8e-42  Score=351.97  Aligned_cols=210  Identities=33%  Similarity=0.503  Sum_probs=177.9

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+...                 +.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         2 l~~~~v~~~~~~~~-----------------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~   63 (221)
T TIGR02211         2 LKCENLGKRYQEGK-----------------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD-NPTSGEVL   63 (221)
T ss_pred             EEEEeeeEEccCCC-----------------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence            68899999986211                 1245999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh----h---cc-ccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          160 YNGRQFSS----S---LK-RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       160 ~~G~~~~~----~---~~-~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      ++|+++..    .   .+ +.++|++|++.+++.+||+||+.+....+   .....+..+++.++++.+||.+..++.+ 
T Consensus        64 ~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-  139 (221)
T TIGR02211        64 FNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRP-  139 (221)
T ss_pred             ECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-
Confidence            99998743    1   22 57999999999999999999998865332   1233344567889999999987777655 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+ +.+|++++
T Consensus       140 ----~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~-~~~d~v~~  213 (221)
T TIGR02211       140 ----SELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LA-KKLDRVLE  213 (221)
T ss_pred             ----hhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEE
Confidence                46999999999999999999999999999999999999999999999986 4899999999975 45 45899999


Q ss_pred             ecCCeEE
Q 005545          311 LSEGSPI  317 (691)
Q Consensus       311 L~~G~iv  317 (691)
                      |++|+++
T Consensus       214 l~~G~i~  220 (221)
T TIGR02211       214 MKDGQLF  220 (221)
T ss_pred             EeCCEec
Confidence            9999975

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.9e-42  Score=358.14  Aligned_cols=218  Identities=24%  Similarity=0.398  Sum_probs=184.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~  153 (691)
                      ..|+++||+++|+.                     +.+|+|+||+|++||+++|+|+||||||||+|+|+|++++    +
T Consensus         6 ~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~   64 (254)
T PRK14273          6 AIIETENLNLFYTD---------------------FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK   64 (254)
T ss_pred             ceEEEeeeEEEeCC---------------------ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCC
Confidence            36999999999861                     3489999999999999999999999999999999998753    2


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT----  223 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----  223 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++ +||+||+.+.....  ......+..++++++++.+++.    
T Consensus        65 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~  141 (254)
T PRK14273         65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIH--GTKDKKKLDEIVEQSLKKSALWNEVK  141 (254)
T ss_pred             CceEEEECCEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhCCchhhH
Confidence            58999999988631      34668999999998885 89999998865332  1112334456788889999873    


Q ss_pred             ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                      +..++.+     +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus       142 ~~~~~~~-----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~  214 (254)
T PRK14273        142 DKLNTNA-----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGR  214 (254)
T ss_pred             HHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHH
Confidence            3345443     57999999999999999999999999999999999999999999999965 799999999975 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++|++++|++|+++..|+++++.
T Consensus       215 ~~d~i~~l~~G~i~~~g~~~~~~  237 (254)
T PRK14273        215 ISDRTAFFLNGCIEEESSTDELF  237 (254)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999998874

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3e-42  Score=357.72  Aligned_cols=224  Identities=25%  Similarity=0.397  Sum_probs=185.3

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C-
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G-  152 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~-  152 (691)
                      .|..|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||||+|+|+..  + 
T Consensus         3 ~~~~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~   61 (253)
T PRK14242          3 SPPKMEARGLSFFYGD---------------------FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPG   61 (253)
T ss_pred             CCcEEEEeeeEEEECC---------------------eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCC
Confidence            3567999999999851                     348999999999999999999999999999999999753  2 


Q ss_pred             -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545          153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~  225 (691)
                       +.+|+|.++|+++..      ..++.++|++|++.+++ .||+||+.+....+  .....++..++++++++.+||.+.
T Consensus        62 ~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~  138 (253)
T PRK14242         62 ARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVN--GVKDKAYLAERVERSLRHAALWDE  138 (253)
T ss_pred             CCCceEEEECCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCchh
Confidence             479999999998742      24568999999998887 59999998865332  111233445678889999998542


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      ..... +..++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. ++.++|
T Consensus       139 ~~~~~-~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~  215 (253)
T PRK14242        139 VKDRL-HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVS  215 (253)
T ss_pred             hhHHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhC
Confidence            21111 123457999999999999999999999999999999999999999999999965 799999999964 577899


Q ss_pred             CEEEEecCCeEEEecCHhHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      |++++|++|++++.|+++++.
T Consensus       216 d~v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14242        216 DVTAFFYMGKLIEVGPTEQIF  236 (253)
T ss_pred             CEEEEEECCEEEEeCCHHHHH
Confidence            999999999999999988764

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-42  Score=362.73  Aligned_cols=219  Identities=28%  Similarity=0.446  Sum_probs=188.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                    .+.+|+|+||++++||+++|+|+||||||||+|+|+|++ ++.+|+|
T Consensus         3 ~l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i   61 (277)
T PRK13652          3 LIETRDLCYSYSG--------------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGIL-KPTSGSV   61 (277)
T ss_pred             eEEEEEEEEEeCC--------------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEE
Confidence            4889999999952                    124899999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    ..++.++|++|++. .+...||.||+.+.....   ....++..++++++++.+||.+..++.+   
T Consensus        62 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---  135 (277)
T PRK13652         62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVP---  135 (277)
T ss_pred             EECCEECCcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCc---
Confidence            999998742    34568999999974 333679999998765321   2344555567889999999987777765   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                        +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+
T Consensus       136 --~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~  212 (277)
T PRK13652        136 --HHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMD  212 (277)
T ss_pred             --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence              479999999999999999999999999999999999999999999999875 899999999964 5778999999999


Q ss_pred             CCeEEEecCHhHHHH
Q 005545          313 EGSPIYSGRAAQVMD  327 (691)
Q Consensus       313 ~G~iv~~G~~~~~~~  327 (691)
                      +|++++.|+++++.+
T Consensus       213 ~G~i~~~g~~~~~~~  227 (277)
T PRK13652        213 KGRIVAYGTVEEIFL  227 (277)
T ss_pred             CCeEEEECCHHHHhc
Confidence            999999999998854

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-43  Score=362.17  Aligned_cols=241  Identities=25%  Similarity=0.380  Sum_probs=203.7

Q ss_pred             ceEEEEEeEEEEEccCCCCC--cccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 005545           77 PVTLKFEDVAYSINLHTSKG--SCFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK  153 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~  153 (691)
                      ++.|+++||++-+.......  ...++. +..-.++.+-..-++|+|++++.||+..|||-||||||||+|+|.++. .|
T Consensus         2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLi-ep   80 (386)
T COG4175           2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLI-EP   80 (386)
T ss_pred             CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccC-CC
Confidence            35689999988876432110  000000 000112233345689999999999999999999999999999999876 57


Q ss_pred             CceEEEECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545          154 FSGKITYNGRQFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       154 ~~G~I~~~G~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~  225 (691)
                      ++|+|+++|.++.+       ++ |+++++|||...|+|+.||.||..|+...+   +.+++++++++.++|+.+||+.+
T Consensus        81 t~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~  157 (386)
T COG4175          81 TRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGY  157 (386)
T ss_pred             CCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhh
Confidence            89999999998853       23 468999999999999999999999998765   67899999999999999999999


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhc
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~  304 (691)
                      .+.++     .+|||||||||.|||||+.+|+|||+|||+|+|||--+.++.+.|.+|+++ ++|||++|||. +++.++
T Consensus       158 ~~~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlri  231 (386)
T COG4175         158 ADKYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRI  231 (386)
T ss_pred             hhcCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhc
Confidence            88766     579999999999999999999999999999999999999999999999875 89999999996 568899


Q ss_pred             CCEEEEecCCeEEEecCHhHHHH
Q 005545          305 FDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       305 ~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .|||.+|++|+++..|+++|++.
T Consensus       232 G~rIaimkdG~ivQ~Gtp~eIl~  254 (386)
T COG4175         232 GDRIAIMKDGEIVQVGTPEEILL  254 (386)
T ss_pred             cceEEEecCCeEEEeCCHHHHHc
Confidence            99999999999999999999953

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-42  Score=361.08  Aligned_cols=218  Identities=31%  Similarity=0.483  Sum_probs=187.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|..                    .+.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~--------------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i~   60 (275)
T PRK13639          2 LETRDLKYSYPD--------------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGIL-KPTSGEVL   60 (275)
T ss_pred             EEEEEEEEEeCC--------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEE
Confidence            789999999851                    134899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh------hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS------SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~------~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..      ..++.++|++|++. .+...||.||+.+.....   ....++..+++.++++.+||.+..++.+  
T Consensus        61 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~--  135 (275)
T PRK13639         61 IKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPP--  135 (275)
T ss_pred             ECCEECccccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCCh--
Confidence            99998741      24568999999973 333579999998764321   2344555567889999999988777765  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+
T Consensus       136 ---~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~  211 (275)
T PRK13639        136 ---HHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMS  211 (275)
T ss_pred             ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence               469999999999999999999999999999999999999999999999877999999999964 5778999999999


Q ss_pred             CCeEEEecCHhHHHH
Q 005545          313 EGSPIYSGRAAQVMD  327 (691)
Q Consensus       313 ~G~iv~~G~~~~~~~  327 (691)
                      +|++++.|+++++..
T Consensus       212 ~G~i~~~g~~~~~~~  226 (275)
T PRK13639        212 DGKIIKEGTPKEVFS  226 (275)
T ss_pred             CCEEEEeCCHHHHhc
Confidence            999999999998753

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-42  Score=378.32  Aligned_cols=239  Identities=24%  Similarity=0.390  Sum_probs=196.9

Q ss_pred             EEEEEeEEEEEccCCCCC-c-ccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           79 TLKFEDVAYSINLHTSKG-S-CFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .|+++||++.|....... . ..... ...-.+.++...+|+|+||+|++||+++|+||||||||||||+|+|++ .+.+
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~-~p~s   82 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLI-EPTR   82 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCC-CCCC
Confidence            589999999987532110 0 00000 001123445556899999999999999999999999999999999987 4779


Q ss_pred             eEEEECCEeCCh----h----ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          156 GKITYNGRQFSS----S----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       156 G~I~~~G~~~~~----~----~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      |+|+++|+++..    .    .++.++||+|++.+++++||+||+.+....+   ....++..++++++++.+||.+..+
T Consensus        83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~  159 (400)
T PRK10070         83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAH  159 (400)
T ss_pred             CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhh
Confidence            999999998752    1    1357999999999999999999999876432   2344555667889999999988777


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+++|
T Consensus       160 ~~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~D  233 (400)
T PRK10070        160 SYP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGD  233 (400)
T ss_pred             cCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCC
Confidence            665     47999999999999999999999999999999999999999999999986 5899999999964 5788999


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++++|++|++++.|+++++..
T Consensus       234 ri~vL~~G~i~~~g~~~~l~~  254 (400)
T PRK10070        234 RIAIMQNGEVVQVGTPDEILN  254 (400)
T ss_pred             EEEEEECCEEEecCCHHHHHh
Confidence            999999999999999988743

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-42  Score=378.62  Aligned_cols=237  Identities=22%  Similarity=0.365  Sum_probs=196.7

Q ss_pred             EEEEeEEEEEccCCCCC-c-ccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           80 LKFEDVAYSINLHTSKG-S-CFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~-~-~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      |+++||.+-+..+.... . ...+. .....++++...+|+|+||+|++||+++|+|+||||||||+|+|+|++ ++.+|
T Consensus         1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~-~p~~G   79 (382)
T TIGR03415         1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLN-PVSRG   79 (382)
T ss_pred             CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCc
Confidence            57899988886432211 0 00010 011235677788999999999999999999999999999999999987 47799


Q ss_pred             EEEECCE----eCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545          157 KITYNGR----QFSS----S---L-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR  224 (691)
Q Consensus       157 ~I~~~G~----~~~~----~---~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~  224 (691)
                      +|+++|+    ++..    .   . ++.++||+|++.+++.+||+||+.++...+   ..++++..++++++++.+||.+
T Consensus        80 ~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~  156 (382)
T TIGR03415        80 SVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQ  156 (382)
T ss_pred             EEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCch
Confidence            9999996    3321    1   2 257999999999999999999999876432   2345666678899999999988


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHh
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~  303 (691)
                      ..++.++     .|||||||||+|||||+.+|+||||||||+|||+.++.++.+.|++++++ |+|||++|||+. ++.+
T Consensus       157 ~~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~  230 (382)
T TIGR03415       157 WADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALK  230 (382)
T ss_pred             hhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHH
Confidence            8777664     69999999999999999999999999999999999999999999999875 999999999964 6789


Q ss_pred             cCCEEEEecCCeEEEecCHhHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++|++++|++|+++..|+++++.
T Consensus       231 l~DrI~vl~~G~iv~~g~~~ei~  253 (382)
T TIGR03415       231 IGNRIAIMEGGRIIQHGTPEEIV  253 (382)
T ss_pred             hCCEEEEEECCEEEEecCHHHHh
Confidence            99999999999999999998885

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.9e-42  Score=361.58  Aligned_cols=222  Identities=25%  Similarity=0.406  Sum_probs=186.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+...                ...+.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~~~----------------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~p~~G~i   64 (280)
T PRK13649          2 GINLQNVSYTYQAGT----------------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLH-VPTQGSV   64 (280)
T ss_pred             eEEEEEEEEEcCCCC----------------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence            488999999996211                00135899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh--------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccc
Q 005545          159 TYNGRQFSS--------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRN  227 (691)
Q Consensus       159 ~~~G~~~~~--------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~  227 (691)
                      .++|+++..        ..++.++|++|++  .+++ .||+||+.+.....   ....++..++++++++.+||.+ ..+
T Consensus        65 ~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~  140 (280)
T PRK13649         65 RVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFE  140 (280)
T ss_pred             EECCEEccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhh
Confidence            999998742        2456799999996  4554 69999998764322   2234445567889999999973 455


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+     +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+
T Consensus       141 ~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~  214 (280)
T PRK13649        141 KNP-----FELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADF  214 (280)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCE
Confidence            544     469999999999999999999999999999999999999999999999877899999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++.+
T Consensus       215 i~~l~~G~i~~~g~~~~~~~  234 (280)
T PRK13649        215 VYVLEKGKLVLSGKPKDIFQ  234 (280)
T ss_pred             EEEEECCEEEEeCCHHHHhc
Confidence            99999999999999988743

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=1.3e-42  Score=350.59  Aligned_cols=193  Identities=35%  Similarity=0.563  Sum_probs=166.8

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCC-CCCCCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLT  187 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lT  187 (691)
                      +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++..    ..++.++|++|++. .++.+|
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t   92 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL-GPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPT   92 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCc
Confidence            35999999999999999999999999999999999977 4679999999988742    34568999999975 366789


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg  267 (691)
                      |+||+.+.....   .....+..++++++++.+||.+..++.+     +.|||||||||+|||||+.+|++|+|||||+|
T Consensus        93 ~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~  164 (211)
T cd03225          93 VEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAG  164 (211)
T ss_pred             HHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence            999998764322   2233444567889999999987766655     46999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      ||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|+
T Consensus       165 LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~  211 (211)
T cd03225         165 LDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK  211 (211)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence            9999999999999999877999999999964 5778899999999885

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.7e-43  Score=396.29  Aligned_cols=218  Identities=34%  Similarity=0.551  Sum_probs=189.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|.|+...                  ...||+|+||+|+|||++||+||||+||||+.++|-.++ .|.+|+|
T Consensus       465 ~IeF~~VsFaYP~Rp------------------~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY-~PtsG~I  525 (716)
T KOG0058|consen  465 VIEFEDVSFAYPTRP------------------DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY-DPTSGRI  525 (716)
T ss_pred             eEEEEEeeeecCCCC------------------CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeE
Confidence            699999999999532                  357999999999999999999999999999999999765 6889999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCcccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCRNSV  229 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~  229 (691)
                      .+||+|+.+    .+|++||+|.|||.||. -||+|||.|+..     ..+.++..+.     +.+.+.  ++++..||.
T Consensus       526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs-~sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~  597 (716)
T KOG0058|consen  526 LLDGVPISDINHKYLRRKIGLVGQEPVLFS-GSIRENIAYGLD-----NATDEEIEAAAKMANAHEFIT--NFPDGYNTV  597 (716)
T ss_pred             EECCeehhhcCHHHHHHHeeeeeccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCccccccc
Confidence            999999964    47899999999999996 499999999753     3344443322     233444  568889999


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      ||+ ....||||||||++|||||++||.||||||.||+||+.+...+-+.|.++.+ ++|||++.|..+.  .+.+|+|+
T Consensus       598 VGE-kG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST--V~~Ad~Iv  673 (716)
T KOG0058|consen  598 VGE-KGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST--VRHADQIV  673 (716)
T ss_pred             cCC-ccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH--hhhccEEE
Confidence            996 3346999999999999999999999999999999999999999999999876 5999999999753  58999999


Q ss_pred             EecCCeEEEecCHhHHHH
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~  327 (691)
                      ++++|++++.|.++|+++
T Consensus       674 vi~~G~V~E~G~h~eLl~  691 (716)
T KOG0058|consen  674 VIDKGRVVEMGTHDELLS  691 (716)
T ss_pred             EEcCCeEEecccHHHHhh
Confidence            999999999999999975

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.4e-42  Score=359.02  Aligned_cols=220  Identities=27%  Similarity=0.417  Sum_probs=187.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|+.                     +.+|+|+||++++||+++|+|+||||||||+++|+|++ ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i   59 (255)
T PRK11231          2 TLRTENLTVGYGT---------------------KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLL-TPQSGTV   59 (255)
T ss_pred             EEEEEeEEEEECC---------------------EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCCcEE
Confidence            5889999998861                     35999999999999999999999999999999999976 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    ..++.++|++|++.+++.+|+.||+.++...... ......+..++++++++.+||.+..++.+   
T Consensus        60 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---  136 (255)
T PRK11231         60 FLGDKPISMLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL---  136 (255)
T ss_pred             EECCEEhHHCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc---
Confidence            999988642    3456799999999988889999999875311000 01112233456788999999987777665   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++
T Consensus       137 --~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~  213 (255)
T PRK11231        137 --TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLAN  213 (255)
T ss_pred             --ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEEC
Confidence              469999999999999999999999999999999999999999999999877999999999965 57899999999999


Q ss_pred             CeEEEecCHhHHH
Q 005545          314 GSPIYSGRAAQVM  326 (691)
Q Consensus       314 G~iv~~G~~~~~~  326 (691)
                      |++++.|+.+++.
T Consensus       214 G~i~~~~~~~~~~  226 (255)
T PRK11231        214 GHVMAQGTPEEVM  226 (255)
T ss_pred             CeEEEEcCHHHhc
Confidence            9999999887763

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-42  Score=359.31  Aligned_cols=208  Identities=26%  Similarity=0.380  Sum_probs=181.8

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|+
T Consensus        11 ~~l~i~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~-~p~~G~   68 (257)
T PRK11247         11 TPLLLNAVSKRYGE---------------------RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE-TPSAGE   68 (257)
T ss_pred             CcEEEEEEEEEECC---------------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeE
Confidence            45999999999861                     35899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      |.++|.++. ..++.++|++|++.+++.+||+||+.+...     .    ...++++++++.+||.+..+..+     ..
T Consensus        69 i~~~g~~~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~  133 (257)
T PRK11247         69 LLAGTAPLA-EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AA  133 (257)
T ss_pred             EEECCEEHH-HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence            999998764 356789999999999998999999987421     1    12346788999999987776655     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. .+.++||++++|++|++
T Consensus       134 LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i  212 (257)
T PRK11247        134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKI  212 (257)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999975 5899999999964 57789999999999999


Q ss_pred             EEecCHh
Q 005545          317 IYSGRAA  323 (691)
Q Consensus       317 v~~G~~~  323 (691)
                      ++.|+.+
T Consensus       213 ~~~~~~~  219 (257)
T PRK11247        213 GLDLTVD  219 (257)
T ss_pred             Eeecccc
Confidence            9887653

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-42  Score=361.53  Aligned_cols=222  Identities=27%  Similarity=0.451  Sum_probs=189.7

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      +..+|+++|++++|+..                   ++.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+
T Consensus         4 ~~~~l~~~nl~~~~~~~-------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~   63 (271)
T PRK13632          4 KSVMIKVENVSFSYPNS-------------------ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLL-KPQS   63 (271)
T ss_pred             cceEEEEEeEEEEcCCC-------------------CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCC
Confidence            34579999999998521                   135899999999999999999999999999999999977 4679


Q ss_pred             eEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545          156 GKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       156 G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      |+|.++|+++..    .+++.++|++|++. .++.+||+||+.+.....   ....++..++++++++.+||.+..++.+
T Consensus        64 G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~  140 (271)
T PRK13632         64 GEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEP  140 (271)
T ss_pred             ceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCc
Confidence            999999998753    35678999999974 677799999998764321   2234445567889999999987777765


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                           +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ ++|||++||++.. + ..||+++
T Consensus       141 -----~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~-~~~d~v~  213 (271)
T PRK13632        141 -----QNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-A-ILADKVI  213 (271)
T ss_pred             -----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-H-hhCCEEE
Confidence                 479999999999999999999999999999999999999999999999876 5999999999754 5 4799999


Q ss_pred             EecCCeEEEecCHhHHHH
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++++.|+.+++.+
T Consensus       214 ~l~~G~i~~~g~~~~~~~  231 (271)
T PRK13632        214 VFSEGKLIAQGKPKEILN  231 (271)
T ss_pred             EEECCEEEEecCHHHHhc
Confidence            999999999999887643

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.5e-42  Score=361.04  Aligned_cols=221  Identities=29%  Similarity=0.401  Sum_probs=187.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+
T Consensus        10 ~~l~i~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~   67 (265)
T PRK10575         10 TTFALRNVSFRVPG---------------------RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ-PPSEGE   67 (265)
T ss_pred             ceEEEeeEEEEECC---------------------EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCE
Confidence            46999999999851                     35999999999999999999999999999999999976 477999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      |.++|+++..    ..++.++|++|++.+++.+||.||+.+........ ........++++++++.++|.+..++.++ 
T Consensus        68 i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-  146 (265)
T PRK10575         68 ILLDAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-  146 (265)
T ss_pred             EEECCEehhhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-
Confidence            9999988742    34568999999988888999999998753211000 01112334568899999999877776654 


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                          .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|
T Consensus       147 ----~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l  221 (265)
T PRK10575        147 ----SLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVAL  221 (265)
T ss_pred             ----cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEE
Confidence                69999999999999999999999999999999999999999999999864 899999999964 577899999999


Q ss_pred             cCCeEEEecCHhHHH
Q 005545          312 SEGSPIYSGRAAQVM  326 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~  326 (691)
                      ++|++++.|+.+++.
T Consensus       222 ~~G~i~~~~~~~~~~  236 (265)
T PRK10575        222 RGGEMIAQGTPAELM  236 (265)
T ss_pred             ECCeEEEecCHHHhc
Confidence            999999999987763

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-42  Score=369.43  Aligned_cols=229  Identities=20%  Similarity=0.277  Sum_probs=186.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCc
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---KFS  155 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---~~~  155 (691)
                      .|+++||+++|+...                 +...+|+||||+|++||+++|+|+||||||||+++|+|++.+   +.+
T Consensus         3 ~L~v~~l~~~y~~~~-----------------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~   65 (330)
T PRK15093          3 LLDIRNLTIEFKTSD-----------------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTA   65 (330)
T ss_pred             eEEEeeeEEEEeCCC-----------------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcc
Confidence            589999999996321                 124599999999999999999999999999999999998742   468


Q ss_pred             eEEEECCEeCCh----h----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCC---CCHHHHHHHHHHHHHHcCC
Q 005545          156 GKITYNGRQFSS----S----LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKK---LTREEKIEQAEMVIMELGL  222 (691)
Q Consensus       156 G~I~~~G~~~~~----~----~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~---~~~~~~~~~v~~~l~~lgL  222 (691)
                      |+|.++|+++..    .    .++.++||+|++.  +.|.+||.+++.+.........   ....+..+++.++++.+||
T Consensus        66 G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL  145 (330)
T PRK15093         66 DRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGI  145 (330)
T ss_pred             eEEEECCEECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCC
Confidence            999999998742    1    1347999999985  6888999999976432110000   1123445678899999999


Q ss_pred             CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545          223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL  301 (691)
Q Consensus       223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i  301 (691)
                      .+..+  ..+..+.+|||||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+ ..+
T Consensus       146 ~~~~~--~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v  222 (330)
T PRK15093        146 KDHKD--AMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QML  222 (330)
T ss_pred             CChHH--HHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHH
Confidence            75321  012234679999999999999999999999999999999999999999999999874 99999999996 467


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .++||++++|++|++++.|+.+++..
T Consensus       223 ~~~~dri~vm~~G~ive~g~~~~i~~  248 (330)
T PRK15093        223 SQWADKINVLYCGQTVETAPSKELVT  248 (330)
T ss_pred             HHhCCEEEEEECCEEEEECCHHHHHh
Confidence            78999999999999999999988753

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=100.00  E-value=3.8e-42  Score=359.66  Aligned_cols=228  Identities=25%  Similarity=0.388  Sum_probs=188.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+....            .+..+.+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~~~~------------~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   68 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGL------------FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLE-KPAQGTV   68 (265)
T ss_pred             eEEEEeEEEEeccCcc------------ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            4889999999963110            00111346999999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNS  228 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~  228 (691)
                      .++|+++..       ..++.++|++|++  .+++.+||+||+.+.....  ......+..++++++++.+||. ...+.
T Consensus        69 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~  146 (265)
T TIGR02769        69 SFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADK  146 (265)
T ss_pred             EECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence            999998742       1356799999997  4677899999998754321  1223334456788999999996 55565


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .+     ++|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|+
T Consensus       147 ~~-----~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~  220 (265)
T TIGR02769       147 LP-----RQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQR  220 (265)
T ss_pred             Ch-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcE
Confidence            54     479999999999999999999999999999999999999999999999875 899999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++..
T Consensus       221 i~~l~~G~i~~~g~~~~~~~  240 (265)
T TIGR02769       221 VAVMDKGQIVEECDVAQLLS  240 (265)
T ss_pred             EEEEeCCEEEEECCHHHHcC
Confidence            99999999999999988753

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.8e-42  Score=358.52  Aligned_cols=221  Identities=23%  Similarity=0.374  Sum_probs=189.0

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      ++..|+++|++++|+..                   .+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+
T Consensus         4 ~~~~l~i~~l~~~~~~~-------------------~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~-~~~~   63 (269)
T PRK13648          4 KNSIIVFKNVSFQYQSD-------------------ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIE-KVKS   63 (269)
T ss_pred             CCceEEEEEEEEEcCCC-------------------CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc
Confidence            34579999999998621                   134899999999999999999999999999999999977 4679


Q ss_pred             eEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545          156 GKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       156 G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      |+|.++|+++..    ..++.++|++|++. +++..|+.+|+.+.....   ....++..++++++++.+|+.+..++.+
T Consensus        64 G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~  140 (269)
T PRK13648         64 GEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP  140 (269)
T ss_pred             eEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc
Confidence            999999998743    35678999999974 677889999998764321   2234445567889999999987777655


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                           +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++. .+|+++
T Consensus       141 -----~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~-~~~-~~d~i~  213 (269)
T PRK13648        141 -----NALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS-EAM-EADHVI  213 (269)
T ss_pred             -----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch-HHh-cCCEEE
Confidence                 479999999999999999999999999999999999999999999999864 899999999975 455 499999


Q ss_pred             EecCCeEEEecCHhHHH
Q 005545          310 VLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~  326 (691)
                      +|++|++++.|+++++.
T Consensus       214 ~l~~G~i~~~g~~~~~~  230 (269)
T PRK13648        214 VMNKGTVYKEGTPTEIF  230 (269)
T ss_pred             EEECCEEEEecCHHHHh
Confidence            99999999999998874

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=100.00  E-value=1.8e-42  Score=356.19  Aligned_cols=230  Identities=27%  Similarity=0.411  Sum_probs=186.6

Q ss_pred             EEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEE
Q 005545           81 KFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY  160 (691)
Q Consensus        81 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~  160 (691)
                      +.+|+++.|.......+..+...+...++++.+.+|+|+||++++||+++|+||||||||||+++|+|++ ++++|+|.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~   80 (236)
T cd03267           2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLL-QPTSGEVRV   80 (236)
T ss_pred             ceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCceEEEE
Confidence            4678888887532111111111111235566778999999999999999999999999999999999977 477999999


Q ss_pred             CCEeCCh---hccccEEEEc-cCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          161 NGRQFSS---SLKRKTGFVT-QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       161 ~G~~~~~---~~~~~igyv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      +|++...   ..++.++|++ |++.+++.+||+|++.+....+   ....++..++++++++.+||.+..++.+.     
T Consensus        81 ~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----  152 (236)
T cd03267          81 AGLVPWKRRKKFLRRIGVVFGQKTQLWWDLPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----  152 (236)
T ss_pred             CCEEccccchhhcccEEEEcCCccccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----
Confidence            9987532   3456899998 5567888999999998765432   22344455677889999999888887664     


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|++|+
T Consensus       153 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~  231 (236)
T cd03267         153 QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGR  231 (236)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCE
Confidence            69999999999999999999999999999999999999999999999864 899999999974 5788999999999999


Q ss_pred             EEEec
Q 005545          316 PIYSG  320 (691)
Q Consensus       316 iv~~G  320 (691)
                      +++.|
T Consensus       232 i~~~g  236 (236)
T cd03267         232 LLYDG  236 (236)
T ss_pred             EEecC
Confidence            98765

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=1.1e-42  Score=351.83  Aligned_cols=199  Identities=31%  Similarity=0.506  Sum_probs=167.0

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCC--CCCCHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLY--PHLTVLE  190 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~--~~lTV~E  190 (691)
                      +.+|+|+|+++++||+++|+||||||||||+++|+|++ ++++|+|.++|+++. ..++.++|++|++.++  ..+||+|
T Consensus        12 ~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~i~~~g~~~~-~~~~~i~~v~q~~~~~~~~~~tv~e   89 (213)
T cd03235          12 HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL-KPTSGSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRD   89 (213)
T ss_pred             EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEEECCccHH-HHHhheEEeccccccccCCCCcHHH
Confidence            35899999999999999999999999999999999977 467999999998764 3567899999998763  3489999


Q ss_pred             HHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          191 TLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       191 ~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                      |+.+....... .....++..++++++++.+||.+..++.+     ..||||||||++|||||+.+|++|+|||||+|||
T Consensus        90 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD  164 (213)
T cd03235          90 VVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQI-----GELSGGQQQRVLLARALVQDPDLLLLDEPFAGVD  164 (213)
T ss_pred             HHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCC
Confidence            99875432110 00112334457889999999987777655     4699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545          270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG  320 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G  320 (691)
                      +.++..+.+.|++++++|+|||++||++. ++.++||++++|++| +++.|
T Consensus       165 ~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g  213 (213)
T cd03235         165 PKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG  213 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence            99999999999999878899999999964 577899999999876 66654

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.2e-42  Score=361.24  Aligned_cols=221  Identities=28%  Similarity=0.435  Sum_probs=189.7

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS-  155 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~-  155 (691)
                      ...|+++||++.|+..                   .+.+|+|+|++|++||+++|+||||||||||+++|+|++. +.+ 
T Consensus         3 ~~~l~i~~l~~~~~~~-------------------~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~-p~~g   62 (282)
T PRK13640          3 DNIVEFKHVSFTYPDS-------------------KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL-PDDN   62 (282)
T ss_pred             CceEEEEEEEEEcCCC-------------------CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC-CCCC
Confidence            3469999999998621                   1348999999999999999999999999999999999874 445 


Q ss_pred             --eEEEECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          156 --GKITYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       156 --G~I~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                        |+|.++|+++..    ..++.+||++|++. .++..||.||+.|.....   ..+.++..++++++++.+||.+..++
T Consensus        63 ~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~  139 (282)
T PRK13640         63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDS  139 (282)
T ss_pred             CCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcC
Confidence              999999998853    34568999999974 667799999998764322   23455666788999999999877776


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .+     +.||||||||++||+||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. + ..||+
T Consensus       140 ~~-----~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~  212 (282)
T PRK13640        140 EP-----ANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQ  212 (282)
T ss_pred             Cc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCE
Confidence            55     579999999999999999999999999999999999999999999999874 8999999999754 5 57999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++..
T Consensus       213 i~~l~~G~i~~~g~~~~~~~  232 (282)
T PRK13640        213 VLVLDDGKLLAQGSPVEIFS  232 (282)
T ss_pred             EEEEECCEEEEeCCHHHHhc
Confidence            99999999999999988754

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-42  Score=359.24  Aligned_cols=222  Identities=24%  Similarity=0.394  Sum_probs=188.6

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ..+|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|
T Consensus         5 ~~~l~i~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G   62 (265)
T PRK10253          5 VARLRGEQLTLGYGK---------------------YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLM-TPAHG   62 (265)
T ss_pred             ccEEEEEEEEEEECC---------------------EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCc
Confidence            357999999999961                     35899999999999999999999999999999999977 46799


Q ss_pred             EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      +|.++|+++..    ..++.++|++|++.+++.+||+||+.+......+. ....+...++++++++.+||.+..++.+ 
T Consensus        63 ~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-  141 (265)
T PRK10253         63 HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-  141 (265)
T ss_pred             EEEECCEEhhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-
Confidence            99999998743    34567999999999998999999998752111000 0011233456889999999987767655 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          +.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.++||++++
T Consensus       142 ----~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~  216 (265)
T PRK10253        142 ----DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIA  216 (265)
T ss_pred             ----ccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEE
Confidence                579999999999999999999999999999999999999999999999874 899999999964 58899999999


Q ss_pred             ecCCeEEEecCHhHHH
Q 005545          311 LSEGSPIYSGRAAQVM  326 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~  326 (691)
                      |++|++++.|+++++.
T Consensus       217 l~~G~i~~~g~~~~~~  232 (265)
T PRK10253        217 LREGKIVAQGAPKEIV  232 (265)
T ss_pred             EECCEEEEeCCHHHHh
Confidence            9999999999988764

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=100.00  E-value=4e-42  Score=351.73  Aligned_cols=212  Identities=26%  Similarity=0.387  Sum_probs=180.5

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||++.|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (230)
T TIGR03410         1 LEVSNLNVYYGQ---------------------SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL-PVKSGSIR   58 (230)
T ss_pred             CEEEeEEEEeCC---------------------eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEEE
Confidence            468999998861                     35999999999999999999999999999999999977 47799999


Q ss_pred             ECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-CCccccccccCC
Q 005545          160 YNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-LTRCRNSVVGGP  233 (691)
Q Consensus       160 ~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~  233 (691)
                      ++|.++..     ..++.++|++|++.+++.+|+.||+.++...+   ...   ..+.++++++.++ +.+..++.+   
T Consensus        59 ~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~---  129 (230)
T TIGR03410        59 LDGEDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRG---  129 (230)
T ss_pred             ECCEECCCCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCCh---
Confidence            99998742     13467999999999999999999998765432   111   1234566777776 555555554   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                        +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++||++++|+
T Consensus       130 --~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~  206 (230)
T TIGR03410       130 --GDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVME  206 (230)
T ss_pred             --hhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEE
Confidence              569999999999999999999999999999999999999999999999874 899999999964 5778999999999


Q ss_pred             CCeEEEecCHhHH
Q 005545          313 EGSPIYSGRAAQV  325 (691)
Q Consensus       313 ~G~iv~~G~~~~~  325 (691)
                      +|++++.|+.+++
T Consensus       207 ~g~i~~~~~~~~~  219 (230)
T TIGR03410       207 RGRVVASGAGDEL  219 (230)
T ss_pred             CCEEEEECCHHHc
Confidence            9999999998876

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-42  Score=355.45  Aligned_cols=219  Identities=21%  Similarity=0.374  Sum_probs=185.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~  154 (691)
                      .|+++||+++|+.                     +.+|+|+|+++++||+++|+||||||||||+++|+|+..+    ++
T Consensus         4 ~l~i~~v~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~   62 (258)
T PRK14241          4 RIDVKDLNIYYGS---------------------FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARV   62 (258)
T ss_pred             cEEEeeEEEEECC---------------------EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCc
Confidence            5899999999861                     3589999999999999999999999999999999997743    26


Q ss_pred             ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----c
Q 005545          155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT----R  224 (691)
Q Consensus       155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----~  224 (691)
                      +|+|.++|+++..      ..++.++|++|++.+++.+||+||+.+....+  .....++..++++++++.+||.    +
T Consensus        63 ~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~  140 (258)
T PRK14241         63 EGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLN--GVRNKKDLDELVEKSLRGANLWNEVKD  140 (258)
T ss_pred             ceEEEECCEeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhh
Confidence            9999999988731      34568999999999999999999998765432  1113344556788899999984    2


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~  304 (691)
                      ..++.     ++.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++
T Consensus       141 ~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~  213 (258)
T PRK14241        141 RLDKP-----GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARV  213 (258)
T ss_pred             HhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHh
Confidence            33433     357999999999999999999999999999999999999999999999965 689999999964 57789


Q ss_pred             CCEEEEec------CCeEEEecCHhHHHH
Q 005545          305 FDKVVVLS------EGSPIYSGRAAQVMD  327 (691)
Q Consensus       305 ~D~v~~L~------~G~iv~~G~~~~~~~  327 (691)
                      ||++++|+      +|++++.|+++++..
T Consensus       214 ~d~i~~l~~~~~~~~g~i~~~~~~~~~~~  242 (258)
T PRK14241        214 SDQTAFFNLEATGKPGRLVEIDDTEKIFS  242 (258)
T ss_pred             CCEEEEEecccCCCCceEEecCCHHHHHh
Confidence            99999997      799999999988743

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=7.4e-42  Score=349.29  Aligned_cols=214  Identities=32%  Similarity=0.477  Sum_probs=181.4

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+...                 ..+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus         5 ~~l~~~~l~~~~~~~~-----------------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~-~p~~G~   66 (228)
T PRK10584          5 NIVEVHHLKKSVGQGE-----------------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLD-DGSSGE   66 (228)
T ss_pred             ceEEEeeeEEEccCCC-----------------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCee
Confidence            4699999999986210                 0124899999999999999999999999999999999976 577999


Q ss_pred             EEECCEeCCh----h---c-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545          158 ITYNGRQFSS----S---L-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV  229 (691)
Q Consensus       158 I~~~G~~~~~----~---~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~  229 (691)
                      |.++|+++..    .   . ++.++|++|++.+++.+||.||+.+....+   .....+..++++++++.++|.+..++.
T Consensus        67 i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~  143 (228)
T PRK10584         67 VSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHL  143 (228)
T ss_pred             EEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCC
Confidence            9999998743    1   1 257999999999999999999998765332   223444566789999999998777766


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      +     ..||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+ +.+|++
T Consensus       144 ~-----~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~-~~~d~i  216 (228)
T PRK10584        144 P-----AQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LA-ARCDRR  216 (228)
T ss_pred             h-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HH-HhCCEE
Confidence            5     469999999999999999999999999999999999999999999999764 899999999975 45 559999


Q ss_pred             EEecCCeEEEe
Q 005545          309 VVLSEGSPIYS  319 (691)
Q Consensus       309 ~~L~~G~iv~~  319 (691)
                      ++|++|++++.
T Consensus       217 ~~l~~g~i~~~  227 (228)
T PRK10584        217 LRLVNGQLQEE  227 (228)
T ss_pred             EEEECCEEEec
Confidence            99999998753

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=100.00  E-value=5.9e-42  Score=357.56  Aligned_cols=220  Identities=31%  Similarity=0.515  Sum_probs=185.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC--Cce
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK--FSG  156 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~--~~G  156 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||+++|+|.+.+.  .+|
T Consensus         4 ~l~~~nl~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G   62 (262)
T PRK09984          4 IIRVEKLAKTFNQ---------------------HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS   62 (262)
T ss_pred             EEEEeeEEEEeCC---------------------eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCce
Confidence            6899999999851                     35899999999999999999999999999999999977432  369


Q ss_pred             EEEECCEeCCh---------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCC
Q 005545          157 KITYNGRQFSS---------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-----KLTREEKIEQAEMVIMELGL  222 (691)
Q Consensus       157 ~I~~~G~~~~~---------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL  222 (691)
                      +|.++|+++..         ..++.++|++|++.+++.+||+||+.+......+.     ....++.+++++++++.+||
T Consensus        63 ~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l  142 (262)
T PRK09984         63 HIELLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGM  142 (262)
T ss_pred             EEEECCEecccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCC
Confidence            99999988632         23567999999999999999999998754211000     01123345678899999999


Q ss_pred             CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHH
Q 005545          223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRL  301 (691)
Q Consensus       223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i  301 (691)
                      .+..++.+     +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++. .+
T Consensus       143 ~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~  216 (262)
T PRK09984        143 VHFAHQRV-----STLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YA  216 (262)
T ss_pred             HHHHhCCc-----cccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence            87777665     46999999999999999999999999999999999999999999999986 4899999999964 57


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      .++||++++|++|++++.|+++++
T Consensus       217 ~~~~d~i~~l~~g~i~~~g~~~~~  240 (262)
T PRK09984        217 LRYCERIVALRQGHVFYDGSSQQF  240 (262)
T ss_pred             HHhCCEEEEEECCEEEEeCCHHHh
Confidence            889999999999999999998764

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-41  Score=356.42  Aligned_cols=224  Identities=23%  Similarity=0.385  Sum_probs=185.6

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----  152 (691)
                      ...|+++||+++|..                     +.+|+|+|++|++||+++|+||||||||||+++|+|+..+    
T Consensus        17 ~~~l~~~nl~~~~~~---------------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~   75 (267)
T PRK14235         17 EIKMRARDVSVFYGE---------------------KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGC   75 (267)
T ss_pred             CceEEEEeEEEEECC---------------------EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC
Confidence            347999999999861                     3599999999999999999999999999999999997743    


Q ss_pred             CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545          153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR  226 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~  226 (691)
                      +.+|+|+++|+++..      ..++.++|++|++.+++. ||.||+.+....+. ......+..++++++++.+||.+..
T Consensus        76 ~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~  153 (267)
T PRK14235         76 RVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHG-LARSKAELDEIVETSLRKAGLWEEV  153 (267)
T ss_pred             CCceEEEECCEECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCchhh
Confidence            479999999998742      245689999999988875 99999988654321 1112334456788899999996421


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      .... +..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||
T Consensus       154 ~~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d  230 (267)
T PRK14235        154 KDRL-HEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQ  230 (267)
T ss_pred             hHHh-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCC
Confidence            1111 123357999999999999999999999999999999999999999999999976 689999999964 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++++|++|++++.|+++++.
T Consensus       231 ~v~~l~~G~i~~~g~~~~~~  250 (267)
T PRK14235        231 RTAFFHLGNLVEVGDTEKMF  250 (267)
T ss_pred             EEEEEECCEEEEeCCHHHHH
Confidence            99999999999999988774

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=100.00  E-value=5.3e-42  Score=356.72  Aligned_cols=219  Identities=30%  Similarity=0.444  Sum_probs=185.8

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                     +.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~   59 (256)
T TIGR03873         2 LRLSRVSWSAGG---------------------RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGAL-RPDAGTVD   59 (256)
T ss_pred             ceEEeEEEEECC---------------------EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCCEEE
Confidence            678999998861                     35999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      ++|+++..    ..++.++|++|++.+++.+||+||+.+....... ......+..+++.++++.+++.+..++.+    
T Consensus        60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----  135 (256)
T TIGR03873        60 LAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDM----  135 (256)
T ss_pred             ECCEEcccCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCc----
Confidence            99998743    3356799999998888889999999875311000 00111233457889999999987777665    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                       ..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++. .+.++||++++|++|
T Consensus       136 -~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G  213 (256)
T TIGR03873       136 -STLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGG  213 (256)
T ss_pred             -ccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence             469999999999999999999999999999999999999999999999877899999999975 577899999999999


Q ss_pred             eEEEecCHhHHH
Q 005545          315 SPIYSGRAAQVM  326 (691)
Q Consensus       315 ~iv~~G~~~~~~  326 (691)
                      ++++.|+.+++.
T Consensus       214 ~i~~~g~~~~~~  225 (256)
T TIGR03873       214 RVVAAGPPREVL  225 (256)
T ss_pred             CEEEecCHHHhh
Confidence            999999988763

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-41  Score=352.97  Aligned_cols=223  Identities=23%  Similarity=0.381  Sum_probs=184.0

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC--CCC--
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL--RGK--  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~--~~~--  153 (691)
                      +.|+++|+++.|..                     +.+|+|+||++++||+++|+||||||||||+++|+|+.  .++  
T Consensus         2 ~~l~~~~~~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~   60 (250)
T PRK14245          2 VKIDARDVNFWYGD---------------------FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR   60 (250)
T ss_pred             cEEEEEEEEEEECC---------------------EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCC
Confidence            47899999998851                     35899999999999999999999999999999999962  233  


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++ .|+.||+.+....+  .....+...++++++++.+||.+...
T Consensus        61 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  137 (250)
T PRK14245         61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVN--GVKDNAFIRQRVEETLKGAALWDEVK  137 (250)
T ss_pred             CceEEEECCEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCcchh
Confidence            48999999998742      34568999999998887 69999998765432  11122334456788999999864321


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .... ..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.||+
T Consensus       138 ~~~~-~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~  214 (250)
T PRK14245        138 DKLK-ESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQ-QAARVSDK  214 (250)
T ss_pred             hhhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCE
Confidence            1111 23457999999999999999999999999999999999999999999999964 799999999965 57789999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++.+
T Consensus       215 v~~l~~G~~~~~~~~~~~~~  234 (250)
T PRK14245        215 TAFFYMGEMVEYDDTKKIFT  234 (250)
T ss_pred             EEEEECCEEEEECCHHHHhc
Confidence            99999999999999998853

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.5e-42  Score=360.26  Aligned_cols=222  Identities=26%  Similarity=0.445  Sum_probs=188.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|+...+               ...+.+|+|+||+|++||+++|+|+||||||||+++|+|++ ++.+|+|
T Consensus         4 ~l~~~~l~~~~~~~~~---------------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i   67 (280)
T PRK13633          4 MIKCKNVSYKYESNEE---------------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALL-IPSEGKV   67 (280)
T ss_pred             eEEEeeeEEEcCCCCC---------------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence            5899999999963210               01245999999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh-----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      .++|+++..     ..++.+||++|++.  ++ ..||.|++.|.....   .....+..++++++++.+||.+..++.+ 
T Consensus        68 ~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-  142 (280)
T PRK13633         68 YVDGLDTSDEENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAP-  142 (280)
T ss_pred             EECCEeccccccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-
Confidence            999998742     34678999999974  44 469999998865322   2344555667899999999988777766 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          +.||||||||++||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++.. +. .||++++
T Consensus       143 ----~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~-~~d~v~~  216 (280)
T PRK13633        143 ----HLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AV-EADRIIV  216 (280)
T ss_pred             ----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hh-cCCEEEE
Confidence                46999999999999999999999999999999999999999999999986 49999999999764 54 4999999


Q ss_pred             ecCCeEEEecCHhHHHH
Q 005545          311 LSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++++.|+++++..
T Consensus       217 l~~G~i~~~g~~~~~~~  233 (280)
T PRK13633        217 MDSGKVVMEGTPKEIFK  233 (280)
T ss_pred             EECCEEEEecCHHHHhc
Confidence            99999999999998754

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=100.00  E-value=4.4e-42  Score=346.87  Aligned_cols=208  Identities=29%  Similarity=0.466  Sum_probs=177.1

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                     +.  .|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 i~~~~l~~~~~~---------------------~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~-~~~~G~i~   56 (211)
T cd03298           1 VRLDKIRFSYGE---------------------QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFE-TPQSGRVL   56 (211)
T ss_pred             CEEEeEEEEeCC---------------------Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            468999998851                     11  2999999999999999999999999999999977 57799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|+++..  ..++.++|++|++.+++.+||+||+.+....+.  .. .++.+++++++++.+||.+..++.+     ..
T Consensus        57 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  128 (211)
T cd03298          57 INGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GE  128 (211)
T ss_pred             ECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----cc
Confidence            99998753  235679999999999999999999987542111  11 1234457889999999987777665     47


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++||++++|++|++
T Consensus       129 LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i  207 (211)
T cd03298         129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRI  207 (211)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999986 4899999999964 57789999999999999


Q ss_pred             EEec
Q 005545          317 IYSG  320 (691)
Q Consensus       317 v~~G  320 (691)
                      ++.|
T Consensus       208 ~~~~  211 (211)
T cd03298         208 AAQG  211 (211)
T ss_pred             eecC
Confidence            8764

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=100.00  E-value=7.2e-42  Score=348.37  Aligned_cols=210  Identities=29%  Similarity=0.453  Sum_probs=182.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+                     .+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         1 l~l~~v~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (223)
T TIGR03740         1 LETKNLSKRFG---------------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGIL-RPTSGEII   58 (223)
T ss_pred             CEEEeEEEEEC---------------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            46889998875                     135899999999999999999999999999999999977 57899999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS  239 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS  239 (691)
                      ++|+++....++.++|++|++.+++.+|++||+.+....+   ...    .+++.++++.+||.+..++.+     +.||
T Consensus        59 ~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS  126 (223)
T TIGR03740        59 FDGHPWTRKDLHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKA-----KQFS  126 (223)
T ss_pred             ECCEeccccccccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhH-----hhCC
Confidence            9999875433357999999999999999999998765432   111    235778899999988777655     4699


Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEe
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS  319 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~  319 (691)
                      ||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.||++++|++|++++.
T Consensus       127 ~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~  205 (223)
T TIGR03740       127 LGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQ  205 (223)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEe
Confidence            99999999999999999999999999999999999999999999877899999999975 57789999999999999999


Q ss_pred             cCHhH
Q 005545          320 GRAAQ  324 (691)
Q Consensus       320 G~~~~  324 (691)
                      |++.+
T Consensus       206 ~~~~~  210 (223)
T TIGR03740       206 GKINK  210 (223)
T ss_pred             cChhh
Confidence            98653

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-41  Score=355.30  Aligned_cols=219  Identities=25%  Similarity=0.427  Sum_probs=185.5

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--  152 (691)
                      ...|+++|++++|+.                     +.+|+|+|++|++||+++|+||||||||||+++|+|++.  +  
T Consensus        11 ~~~l~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~   69 (260)
T PRK10744         11 PSKIQVRNLNFYYGK---------------------FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQ   69 (260)
T ss_pred             CceEEEEEEEEEeCC---------------------eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCC
Confidence            356999999999861                     248999999999999999999999999999999999764  1  


Q ss_pred             CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc--
Q 005545          153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR--  224 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~--  224 (691)
                      +++|+|.++|+++..      ..++.++|++|++.+++ .||+||+.+.....  ...+.++..++++++++.+++.+  
T Consensus        70 p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~  146 (260)
T PRK10744         70 RAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLF--EKLSRAEMDERVEWALTKAALWNEV  146 (260)
T ss_pred             CcceEEEECCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhc--CCCCHHHHHHHHHHHHHHcCCChhh
Confidence            479999999988741      34678999999998887 89999998765322  12334445567889999999843  


Q ss_pred             --cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545          225 --CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY  302 (691)
Q Consensus       225 --~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~  302 (691)
                        ..++.     ...||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.
T Consensus       147 ~~~~~~~-----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~  219 (260)
T PRK10744        147 KDKLHQS-----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAA  219 (260)
T ss_pred             HHHHhcC-----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHH
Confidence              23333     357999999999999999999999999999999999999999999999964 789999999964 577


Q ss_pred             hcCCEEEEecCCeEEEecCHhHHH
Q 005545          303 RMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       303 ~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++++|++|++++.|+++++.
T Consensus       220 ~~~d~i~~l~~G~i~~~g~~~~~~  243 (260)
T PRK10744        220 RCSDYTAFMYLGELIEFGNTDTIF  243 (260)
T ss_pred             HhCCEEEEEECCEEEEeCCHHHHH
Confidence            899999999999999999988874

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.1e-41  Score=350.51  Aligned_cols=216  Identities=31%  Similarity=0.483  Sum_probs=188.1

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                     +.+|+|+|+++.+||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         1 i~i~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~   58 (237)
T TIGR00968         1 IEIANISKRFGS---------------------FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLE-QPDSGRIR   58 (237)
T ss_pred             CEEEEEEEEECC---------------------eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEE
Confidence            468999998861                     35999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|.++..  ..++.++|++|++.+++.+|+.||+.+....+   ........+.++++++.+++.+..++.+     +.
T Consensus        59 i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  130 (237)
T TIGR00968        59 LNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYP-----NQ  130 (237)
T ss_pred             ECCEEcCcCChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCh-----hh
Confidence            99998753  33568999999999999999999998765432   1233344567789999999987777655     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      |||||+||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|++|++
T Consensus       131 lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i  209 (237)
T TIGR00968       131 LSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKI  209 (237)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999875 899999999964 57889999999999999


Q ss_pred             EEecCHhHHH
Q 005545          317 IYSGRAAQVM  326 (691)
Q Consensus       317 v~~G~~~~~~  326 (691)
                      ++.|+.+++.
T Consensus       210 ~~~~~~~~~~  219 (237)
T TIGR00968       210 EQIGSPDEVY  219 (237)
T ss_pred             EEecCHHHHH
Confidence            9999988874

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=100.00  E-value=1.3e-41  Score=348.62  Aligned_cols=216  Identities=32%  Similarity=0.505  Sum_probs=188.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||++++..                     +.+|+|+|+++++||+++|+|+||||||||+++|+|.+ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~-~~~~G~i~   58 (232)
T cd03300           1 IELENVSKFYGG---------------------FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFE-TPTSGEIL   58 (232)
T ss_pred             CEEEeEEEEeCC---------------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCceEEE
Confidence            468999998851                     35999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|+++..  ..++.++|++|++.+++.+|++||+.+....+   ........++++++++.+||.+..++.+     +.
T Consensus        59 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  130 (232)
T cd03300          59 LDGKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQ  130 (232)
T ss_pred             ECCEEcCcCChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hh
Confidence            99998753  23568999999999998999999998765432   1233444567888999999987777655     47


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. ++.+.||++++|++|++
T Consensus       131 lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~  209 (232)
T cd03300         131 LSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKI  209 (232)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999874 899999999964 57889999999999999


Q ss_pred             EEecCHhHHH
Q 005545          317 IYSGRAAQVM  326 (691)
Q Consensus       317 v~~G~~~~~~  326 (691)
                      ++.|+.+++.
T Consensus       210 ~~~~~~~~~~  219 (232)
T cd03300         210 QQIGTPEEIY  219 (232)
T ss_pred             EecCCHHHHH
Confidence            9999887764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.3e-41  Score=351.79  Aligned_cols=222  Identities=23%  Similarity=0.356  Sum_probs=184.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CCCce
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--GKFSG  156 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~~~~G  156 (691)
                      .++++||++.|+.                     +.+|+|+|+++++||+++|+||||||||||+|+|+|++.  ++.+|
T Consensus         2 ~~~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G   60 (246)
T PRK14269          2 IAKTTNLNLFYGK---------------------KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG   60 (246)
T ss_pred             ceeeeeeEEEECC---------------------EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce
Confidence            4789999999861                     358999999999999999999999999999999999763  35799


Q ss_pred             EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      +|.++|+++..    ..++.++|++|++.+++ .||+||+.++...+- ......+..++++++++.++|.+...... +
T Consensus        61 ~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~  137 (246)
T PRK14269         61 LVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKL-K  137 (246)
T ss_pred             EEEECCEecccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHh-c
Confidence            99999998753    34668999999998887 699999988643321 00122334456788999999953211111 1


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      ...+.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+.+.+|++++|+
T Consensus       138 ~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~  215 (246)
T PRK14269        138 QNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFH  215 (246)
T ss_pred             CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEE
Confidence            23357999999999999999999999999999999999999999999999975 899999999964 5778999999999


Q ss_pred             CCeEEEecCHhHHH
Q 005545          313 EGSPIYSGRAAQVM  326 (691)
Q Consensus       313 ~G~iv~~G~~~~~~  326 (691)
                      +|++++.|+.+++.
T Consensus       216 ~G~i~~~g~~~~~~  229 (246)
T PRK14269        216 LGELIEFGESKEFF  229 (246)
T ss_pred             CCEEEEECCHHHHH
Confidence            99999999988874

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-41  Score=360.42  Aligned_cols=221  Identities=22%  Similarity=0.385  Sum_probs=185.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.+..                ....+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus         6 ~l~i~nl~~~~~~~~~----------------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i   68 (289)
T PRK13645          6 DIILDNVSYTYAKKTP----------------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI-ISETGQT   68 (289)
T ss_pred             eEEEEEEEEEeCCCCc----------------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceE
Confidence            5899999999962110                0134899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCC---------hhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545          159 TYNGRQFS---------SSLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCR  226 (691)
Q Consensus       159 ~~~G~~~~---------~~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~  226 (691)
                      .++|+++.         ...++.++|++|++.  ++ ..||+||+.+.....   ....++..++++++++.++|. +..
T Consensus        69 ~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-~~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~  144 (289)
T PRK13645         69 IVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF-QETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYV  144 (289)
T ss_pred             EECCEEccccccccccHHHHhccEEEEEeCcchhhh-hhHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHh
Confidence            99998863         134568999999973  44 469999998865321   223444456788899999994 556


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~  305 (691)
                      ++.+     +.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.++|
T Consensus       145 ~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~  218 (289)
T PRK13645        145 KRSP-----FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIA  218 (289)
T ss_pred             cCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhC
Confidence            6554     47999999999999999999999999999999999999999999999986 4899999999964 578899


Q ss_pred             CEEEEecCCeEEEecCHhHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      |++++|++|++++.|+++++.
T Consensus       219 d~i~~l~~G~i~~~g~~~~~~  239 (289)
T PRK13645        219 DEVIVMHEGKVISIGSPFEIF  239 (289)
T ss_pred             CEEEEEECCEEEEeCCHHHHh
Confidence            999999999999999988774

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.8e-41  Score=351.77  Aligned_cols=222  Identities=23%  Similarity=0.379  Sum_probs=184.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--CC
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--KF  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~~  154 (691)
                      .|+++||+++|+.                     +.+|+|+|++|++||+++|+|+||||||||+++|+|+++  +  ++
T Consensus         4 ~l~~~nl~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~   62 (252)
T PRK14256          4 KVKLEQLNVHFGK---------------------NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARV   62 (252)
T ss_pred             EEEEEEEEEEeCC---------------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCC
Confidence            4899999999861                     358999999999999999999999999999999999864  2  25


Q ss_pred             ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      +|+|.++|+++..      ..++.++|++|++.+++.+||+||+.+.....  ......+..++++++++.+++.+....
T Consensus        63 ~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~  140 (252)
T PRK14256         63 TGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKD  140 (252)
T ss_pred             ceEEEECCEEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhH
Confidence            8999999998742      34678999999999999999999998754321  112333445678889999998642211


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      ... ..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++||++
T Consensus       141 ~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i  217 (252)
T PRK14256        141 RLK-SNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYT  217 (252)
T ss_pred             Hhh-CCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEE
Confidence            111 23457999999999999999999999999999999999999999999999976 589999999964 577899999


Q ss_pred             EEecCCeEEEecCHhHHH
Q 005545          309 VVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~  326 (691)
                      ++|++|++++.|+++++.
T Consensus       218 ~~l~~G~i~~~~~~~~~~  235 (252)
T PRK14256        218 AFFYMGDLVECGETKKIF  235 (252)
T ss_pred             EEEECCEEEEeCCHHHHH
Confidence            999999999999988874

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.8e-42  Score=352.01  Aligned_cols=212  Identities=31%  Similarity=0.469  Sum_probs=182.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   60 (241)
T PRK14250          3 EIEFKEVSYSSFG---------------------KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI-DPTEGSI   60 (241)
T ss_pred             eEEEEeEEEEeCC---------------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            5899999998851                     34899999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~  233 (691)
                      .++|+++..    ..++.++|++|++.+++ .||+||+.+....+   .  .  ..+++.++++.+||. +..++.+   
T Consensus        61 ~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~---  129 (241)
T PRK14250         61 LIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G--E--KNVDVEYYLSIVGLNKEYATRDV---  129 (241)
T ss_pred             EECCEEhhhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C--c--HHHHHHHHHHHcCCCHHHhhCCc---
Confidence            999998742    34668999999998886 69999988653221   1  1  134677899999996 4455543   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                        ..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++|+
T Consensus       130 --~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~  206 (241)
T PRK14250        130 --KNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLN  206 (241)
T ss_pred             --ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEe
Confidence              579999999999999999999999999999999999999999999999874 899999999964 5778999999999


Q ss_pred             CCeEEEecCHhHHH
Q 005545          313 EGSPIYSGRAAQVM  326 (691)
Q Consensus       313 ~G~iv~~G~~~~~~  326 (691)
                      +|++++.|+++++.
T Consensus       207 ~G~i~~~~~~~~~~  220 (241)
T PRK14250        207 KGILVEYAKTYDFF  220 (241)
T ss_pred             CCEEEEeCCHHHHh
Confidence            99999999988874

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=9.6e-42  Score=349.62  Aligned_cols=215  Identities=27%  Similarity=0.463  Sum_probs=184.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +  ..|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         2 l~~~~l~~~~~~---------------------~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   57 (232)
T PRK10771          2 LKLTDITWLYHH---------------------L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFL-TPASGSLT   57 (232)
T ss_pred             eEEEEEEEEECC---------------------c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            789999999961                     1  13899999999999999999999999999999976 57799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|+++..  ..++.++|++|++.+++.+|+.||+.+......  .. .+...++++++++.+||++..++.+     +.
T Consensus        58 ~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  129 (232)
T PRK10771         58 LNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KL-NAAQREKLHAIARQMGIEDLLARLP-----GQ  129 (232)
T ss_pred             ECCeecCcCChhhccEEEEecccccccCCcHHHHHhccccccc--CC-CHHHHHHHHHHHHHcCcHHHHhCCc-----cc
Confidence            99998753  234679999999999999999999987532110  11 2234557889999999987777766     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++. ++.+.+|++++|++|++
T Consensus       130 LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i  208 (232)
T PRK10771        130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRI  208 (232)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence            999999999999999999999999999999999999999999999976 4899999999964 57789999999999999


Q ss_pred             EEecCHhHHHH
Q 005545          317 IYSGRAAQVMD  327 (691)
Q Consensus       317 v~~G~~~~~~~  327 (691)
                      ++.|+.+++.+
T Consensus       209 ~~~g~~~~~~~  219 (232)
T PRK10771        209 AWDGPTDELLS  219 (232)
T ss_pred             EEeCCHHHHHh
Confidence            99999887743

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=356.30  Aligned_cols=221  Identities=22%  Similarity=0.400  Sum_probs=184.8

Q ss_pred             CccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-
Q 005545           74 SLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-  152 (691)
Q Consensus        74 ~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-  152 (691)
                      +..++.|+++||+++|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|+..+ 
T Consensus         8 ~~~~~~l~i~nl~~~~~~---------------------~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~   66 (269)
T PRK14259          8 ISKNIIISLQNVTISYGT---------------------FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLI   66 (269)
T ss_pred             CCCCceEEEEeEEEEECC---------------------EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccc
Confidence            345578999999999862                     3589999999999999999999999999999999997642 


Q ss_pred             ---CCceEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545          153 ---KFSGKITYNGRQFS------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       153 ---~~~G~I~~~G~~~~------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~  223 (691)
                         +++|+|.++|+++.      ...++.++|++|++.+++ .||+||+.+.+..+   .... +..++++++++.+++.
T Consensus        67 ~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~  141 (269)
T PRK14259         67 EGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFP-KSIYENIAFGARIN---GYTG-DMDELVERSLRKAAVW  141 (269)
T ss_pred             CCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCccch-hhHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCc
Confidence               57999999998863      134568999999999887 49999998865432   1122 2345677788888874


Q ss_pred             c----cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545          224 R----CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       224 ~----~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      .    ..++.     ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.++|+++++ ++|||++||++. 
T Consensus       142 ~~l~~~~~~~-----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-  214 (269)
T PRK14259        142 DECKDKLNES-----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-  214 (269)
T ss_pred             chhhhhhCCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-
Confidence            2    23433     357999999999999999999999999999999999999999999999965 689999999964 


Q ss_pred             HHHhcCCEEEEecC-----------CeEEEecCHhHHHH
Q 005545          300 RLYRMFDKVVVLSE-----------GSPIYSGRAAQVMD  327 (691)
Q Consensus       300 ~i~~~~D~v~~L~~-----------G~iv~~G~~~~~~~  327 (691)
                      .+.++||++++|++           |++++.|+++++.+
T Consensus       215 ~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~~  253 (269)
T PRK14259        215 QAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKIFN  253 (269)
T ss_pred             HHHHhcCEEEEEeccccccccccccceEEEeCCHHHHHh
Confidence            67899999999996           67899999988854

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.9e-42  Score=337.00  Aligned_cols=218  Identities=34%  Similarity=0.528  Sum_probs=188.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+.+||||++.                     .+++|++||++++|||++||+||||||||||||.|+|.+ .|.+|++
T Consensus         1 mi~a~nls~~~~---------------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel-~p~~G~v   58 (259)
T COG4559           1 MIRAENLSYSLA---------------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGEL-SPDSGEV   58 (259)
T ss_pred             CeeeeeeEEEee---------------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCcc-CCCCCeE
Confidence            478999999987                     256999999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC--CHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL--TREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~--~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      .+||.+++.    ++.+.-+.++|+..+-...||.|-+.++..   |...  ...+..+.+++.|+..++.+.+.+.+  
T Consensus        59 ~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~---p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y--  133 (259)
T COG4559          59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRI---PHRSGREPEEDERIAAQALAATDLSGLAGRDY--  133 (259)
T ss_pred             eeCCcChhhCCHHHHHHHhhhcccCcccccceEHHHHHHhccc---ccccCCCchhhHHHHHHHHHHcChhhhhccch--
Confidence            999999864    456678999999887666899999998753   3322  22345556788999999988776654  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          233 PLFRGISGGERKRVSIGQEMLV------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                         +.|||||||||.+||.|+.      ++++|+||||||+||...+..++++.++++++|..|+++.||.+. ...+||
T Consensus       134 ---~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaD  209 (259)
T COG4559         134 ---RTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYAD  209 (259)
T ss_pred             ---hhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhh
Confidence               5799999999999999985      446999999999999999999999999999999999999999764 678999


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ||++|++||++..|++++++.
T Consensus       210 rivll~~Grv~a~g~p~~vlt  230 (259)
T COG4559         210 RIVLLHQGRVIASGSPQDVLT  230 (259)
T ss_pred             eeeeeeCCeEeecCCHHHhcC
Confidence            999999999999999998853

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-41  Score=354.15  Aligned_cols=224  Identities=22%  Similarity=0.349  Sum_probs=186.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----  152 (691)
                      +..|+++||+++|+.                     +.+|+|+|+++++||+++|+|||||||||||++|+|++.+    
T Consensus        18 ~~~l~~~nl~~~~~~---------------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~   76 (267)
T PRK14237         18 EIALSTKDLHVYYGK---------------------KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIA   76 (267)
T ss_pred             CeEEEEeeEEEEECC---------------------eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCC
Confidence            457999999999851                     3589999999999999999999999999999999998742    


Q ss_pred             CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545          153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR  226 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~  226 (691)
                      +++|+|.++|+++..      ..++.++|++|++.+++ .||+||+.++....  ....+++..+++.++++.++|.+..
T Consensus        77 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i  153 (267)
T PRK14237         77 RVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQV  153 (267)
T ss_pred             CcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchh
Confidence            579999999998742      24668999999998887 69999998864321  1123344456788899999985422


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      +... +..++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.++|+++++ +.|||++||++. ++.++||
T Consensus       154 ~~~~-~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d  230 (267)
T PRK14237        154 KDDL-HKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASD  230 (267)
T ss_pred             hhhh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcC
Confidence            2222 123467999999999999999999999999999999999999999999999964 789999999975 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++++|++|++++.|+++++..
T Consensus       231 ~i~~l~~G~i~~~g~~~~~~~  251 (267)
T PRK14237        231 YTAFFYLGDLIEYDKTRNIFT  251 (267)
T ss_pred             EEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999988743

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=100.00  E-value=1.5e-41  Score=355.52  Aligned_cols=227  Identities=21%  Similarity=0.369  Sum_probs=188.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..+.+            ..+.+.+.+|+|+|+++++||+++|+|||||||||||++|+|++ ++.+|+|
T Consensus         4 ~l~~~~l~~~~~~~~~------------~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~-~p~~G~i   70 (267)
T PRK15112          4 LLEVRNLSKTFRYRTG------------WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEL   70 (267)
T ss_pred             eEEEeceEEEecCCCC------------cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence            5899999999962110            00011246999999999999999999999999999999999987 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg  231 (691)
                      .++|.++..    ..++.++|++|++.  +++.+||.|++.+......  .....+..++++++++.+||. +..++.+ 
T Consensus        71 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-  147 (267)
T PRK15112         71 LIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-  147 (267)
T ss_pred             EECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-
Confidence            999998752    23457999999975  6788899999987654321  223444456788999999994 5555544 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. .+.++||++++
T Consensus       148 ----~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~  222 (267)
T PRK15112        148 ----HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLV  222 (267)
T ss_pred             ----hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence                469999999999999999999999999999999999999999999999874 899999999964 57789999999


Q ss_pred             ecCCeEEEecCHhHHH
Q 005545          311 LSEGSPIYSGRAAQVM  326 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~  326 (691)
                      |++|++++.|+++++.
T Consensus       223 l~~G~i~~~~~~~~~~  238 (267)
T PRK15112        223 MHQGEVVERGSTADVL  238 (267)
T ss_pred             EECCEEEecCCHHHHh
Confidence            9999999999988764

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.2e-41  Score=344.56  Aligned_cols=209  Identities=28%  Similarity=0.438  Sum_probs=179.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      ++++||++.|+.                       +++|+|+++++||+++|+||||||||||+|+|+|.+ ++.+|+|.
T Consensus         1 ~~~~~l~~~~~~-----------------------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   56 (213)
T TIGR01277         1 LALDKVRYEYEH-----------------------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFI-EPASGSIK   56 (213)
T ss_pred             CeEEeeeEEeCC-----------------------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEE
Confidence            468999988851                       357999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|+++..  ..++.++|++|++.+++.+|+.||+.+......  . ...+..++++++++.+||.+..++.+     +.
T Consensus        57 ~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  128 (213)
T TIGR01277        57 VNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQ  128 (213)
T ss_pred             ECCEEcccCChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----cc
Confidence            99998753  356789999999999999999999987542111  1 12223456788999999987777655     47


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.+|++++|++|++
T Consensus       129 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i  207 (213)
T TIGR01277       129 LSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKI  207 (213)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeE
Confidence            9999999999999999999999999999999999999999999999864 899999999964 56789999999999999


Q ss_pred             EEecC
Q 005545          317 IYSGR  321 (691)
Q Consensus       317 v~~G~  321 (691)
                      ++.|.
T Consensus       208 ~~~~~  212 (213)
T TIGR01277       208 KVVSD  212 (213)
T ss_pred             EEecC
Confidence            98875

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=100.00  E-value=1.2e-42  Score=402.53  Aligned_cols=219  Identities=34%  Similarity=0.522  Sum_probs=188.2

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      -.++|+||+|+|....                   ..+|+|+|++|++||.+||+|+||||||||+|+|+|++ .|.+|+
T Consensus       470 g~I~~~nvsf~y~~~~-------------------~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly-~p~~G~  529 (709)
T COG2274         470 GEIEFENVSFRYGPDD-------------------PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY-KPQQGR  529 (709)
T ss_pred             ceEEEEEEEEEeCCCC-------------------cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCce
Confidence            3699999999998431                   25899999999999999999999999999999999987 577999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCRNS  228 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~  228 (691)
                      |++||.+++.    .+|+++|||+||+.+|. -|++||+.++..     ..+.++..+.     +.+.++  .++...+|
T Consensus       530 I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-gSI~eNi~l~~p-----~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t  601 (709)
T COG2274         530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-GSIRENIALGNP-----EATDEEIIEAAQLAGAHEFIE--NLPMGYDT  601 (709)
T ss_pred             EEECCEeHHhcCHHHHHhheeEEcccchhhc-CcHHHHHhcCCC-----CCCHHHHHHHHHHhCcHHHHH--hccccccc
Confidence            9999999864    58999999999999995 599999987642     2333333222     233333  45677899


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .+|+ ...+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|.++.+ |+|+|+++|+++  ..+.||||
T Consensus       602 ~v~E-~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrI  677 (709)
T COG2274         602 PVGE-GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRI  677 (709)
T ss_pred             cccc-CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEE
Confidence            9985 4567999999999999999999999999999999999999999999999876 699999999975  47899999


Q ss_pred             EEecCCeEEEecCHhHHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~~  328 (691)
                      ++|++|+++++|+++|+++.
T Consensus       678 iVl~~Gkiv~~gs~~ell~~  697 (709)
T COG2274         678 IVLDQGKIVEQGSHEELLAQ  697 (709)
T ss_pred             EEccCCceeccCCHHHHHHh
Confidence            99999999999999999864

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-41  Score=352.14  Aligned_cols=223  Identities=21%  Similarity=0.395  Sum_probs=184.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C---
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K---  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~---  153 (691)
                      ..|+++||++.|..                     +.+|+|+||+|++||+++|+||||||||||+++|+|++.+ +   
T Consensus        11 ~~l~i~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~   69 (259)
T PRK14274         11 EVYQINGMNLWYGQ---------------------HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVK   69 (259)
T ss_pred             ceEEEeeEEEEECC---------------------eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCC
Confidence            46999999999861                     3589999999999999999999999999999999997642 2   


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++. ||+||+.+....+  ....+++..++++++++.+++.+...
T Consensus        70 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  146 (259)
T PRK14274         70 LTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVK  146 (259)
T ss_pred             CceEEEECCEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhh
Confidence            58999999998741      345689999999988875 9999998764322  11123444566788999999853211


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      ... +...++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|+|++||++. .+.+.||+
T Consensus       147 ~~l-~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~  223 (259)
T PRK14274        147 DRL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQ  223 (259)
T ss_pred             hhh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCE
Confidence            111 123357999999999999999999999999999999999999999999999975 789999999964 57889999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|+++..|+++++.+
T Consensus       224 i~~l~~G~i~~~g~~~~~~~  243 (259)
T PRK14274        224 TAFFYMGELVECNDTNKMFS  243 (259)
T ss_pred             EEEEECCEEEEECCHHHHhh
Confidence            99999999999999988743

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=100.00  E-value=2.4e-41  Score=347.54  Aligned_cols=216  Identities=34%  Similarity=0.555  Sum_probs=187.2

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|+++.|.                     . ++|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~---------------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~-~p~~G~v~   57 (235)
T cd03299           1 LKVENLSKDWK---------------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFI-KPDSGKIL   57 (235)
T ss_pred             CeeEeEEEEeC---------------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc-CCCceEEE
Confidence            46788888875                     1 2799999999999999999999999999999999977 57799999


Q ss_pred             ECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      ++|.++..  ..++.++|++|++.+++.+|+.||+.+.....   .....+..+++.++++.+||.+..++.+     +.
T Consensus        58 i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~  129 (235)
T cd03299          58 LNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ET  129 (235)
T ss_pred             ECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----cc
Confidence            99998753  23568999999999999999999998764322   2234455567788999999987777765     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||||||||++|||+|+.+|++++|||||+|||+.+++.+.+.|++++++ |+|||++||++. ++.+.||++++|++|++
T Consensus       130 LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i  208 (235)
T cd03299         130 LSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKL  208 (235)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence            9999999999999999999999999999999999999999999999865 899999999964 57789999999999999


Q ss_pred             EEecCHhHHHH
Q 005545          317 IYSGRAAQVMD  327 (691)
Q Consensus       317 v~~G~~~~~~~  327 (691)
                      ++.|+.+++.+
T Consensus       209 ~~~~~~~~~~~  219 (235)
T cd03299         209 IQVGKPEEVFK  219 (235)
T ss_pred             EEecCHHHHHh
Confidence            99999887643

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=8.2e-42  Score=388.32  Aligned_cols=220  Identities=23%  Similarity=0.384  Sum_probs=189.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCceE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-KFSGK  157 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~~~G~  157 (691)
                      +|+++||+++|.                     ++.+|+|+||++++||+++|+||||||||||+|+|+|++++ +++|+
T Consensus         5 ~l~~~nl~~~~~---------------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~   63 (506)
T PRK13549          5 LLEMKNITKTFG---------------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGE   63 (506)
T ss_pred             eEEEeeeEEEeC---------------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence            699999999985                     13599999999999999999999999999999999998753 47999


Q ss_pred             EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      |.++|+++..     ..++.+|||+|++.+++.+||+||+.++...+.......++..++++++++.+||.+..++.+  
T Consensus        64 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  141 (506)
T PRK13549         64 IIFEGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPV--  141 (506)
T ss_pred             EEECCEECCCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccch--
Confidence            9999998753     134679999999999999999999988643221111233444567889999999987777766  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+.++||++++|+
T Consensus       142 ---~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~  217 (506)
T PRK13549        142 ---GNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIR  217 (506)
T ss_pred             ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEE
Confidence               469999999999999999999999999999999999999999999999878999999999964 5778999999999


Q ss_pred             CCeEEEecCHhHH
Q 005545          313 EGSPIYSGRAAQV  325 (691)
Q Consensus       313 ~G~iv~~G~~~~~  325 (691)
                      +|++++.|+++++
T Consensus       218 ~G~i~~~~~~~~~  230 (506)
T PRK13549        218 DGRHIGTRPAAGM  230 (506)
T ss_pred             CCEEeeecccccC
Confidence            9999999987664

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-41  Score=368.97  Aligned_cols=194  Identities=32%  Similarity=0.522  Sum_probs=173.7

Q ss_pred             ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      |+||++++||+++|+||||||||||||+|+|++ ++++|+|.++|+++..        ..++.++||+|++.+++++||+
T Consensus        16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   94 (352)
T PRK11144         16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLT-RPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVR   94 (352)
T ss_pred             EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHH
Confidence            899999999999999999999999999999977 4679999999988642        2467899999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                      ||+.|+..         ....++++++++.+||.+..++.+     +.|||||||||+|||||+.+|++|||||||+|||
T Consensus        95 enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD  160 (352)
T PRK11144         95 GNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLD  160 (352)
T ss_pred             HHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence            99987532         112356889999999988777765     4699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          270 STTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +.++..+.+.|++++++ |+|+|++||++. ++.++||++++|++|+++..|+++++..
T Consensus       161 ~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~i~~  218 (352)
T PRK11144        161 LPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAFGPLEEVWA  218 (352)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence            99999999999999875 899999999964 6889999999999999999999998854

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-41  Score=350.18  Aligned_cols=218  Identities=22%  Similarity=0.382  Sum_probs=184.4

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~  153 (691)
                      +.|+++||++.|+.                     +.+|+|+|+++++||+++|+|+||||||||+++|+|+..+    +
T Consensus         3 ~~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~   61 (251)
T PRK14270          3 IKMESKNLNLWYGE---------------------KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK   61 (251)
T ss_pred             cEEEEEEeEEEECC---------------------eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCC
Confidence            46899999998851                     3589999999999999999999999999999999997643    2


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---  224 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---  224 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++ +|++||+.+.....  ......+..++++++++.++|.+   
T Consensus        62 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  138 (251)
T PRK14270         62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIH--GIKDKKELDKIVEWALKKAALWDEVK  138 (251)
T ss_pred             CccEEEECCEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHcCCchhhh
Confidence            68999999998742      24567999999999887 89999998865332  11123344567788999998842   


Q ss_pred             -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                       ..++.     ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus       139 ~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~  211 (251)
T PRK14270        139 DDLKKS-----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASR  211 (251)
T ss_pred             hHhhCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHH
Confidence             23333     457999999999999999999999999999999999999999999999976 589999999964 6788


Q ss_pred             cCCEEEEecCCeEEEecCHhHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +||++++|++|++++.|+++++.
T Consensus       212 ~~d~v~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14270        212 VSDYTAFFLMGDLIEFNKTEKIF  234 (251)
T ss_pred             hcCEEEEEECCeEEEeCCHHHHh
Confidence            99999999999999999998874

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.3e-41  Score=356.10  Aligned_cols=219  Identities=26%  Similarity=0.456  Sum_probs=188.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+..                  ..+.+|+|+|+++++||+++|+|+||||||||+++|+|.+ ++.+|+|
T Consensus         4 ~l~~~~l~~~~~~~------------------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~-~~~~G~i   64 (277)
T PRK13642          4 ILEVENLVFKYEKE------------------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLF-EEFEGKV   64 (277)
T ss_pred             eEEEEEEEEEcCCC------------------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCCEE
Confidence            68999999999621                  0134899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCC-CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDV-LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    ..++.+||++|++. .++..||.||+.+.....   ....++..++++++++.+||.+..++.+   
T Consensus        65 ~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~---  138 (277)
T PRK13642         65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP---  138 (277)
T ss_pred             EECCEECCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc---
Confidence            999998753    34678999999974 566789999998764321   2344455567889999999987777655   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                        ..||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++.. +. .+|++++|+
T Consensus       139 --~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~  214 (277)
T PRK13642        139 --ARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMK  214 (277)
T ss_pred             --ccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEE
Confidence              479999999999999999999999999999999999999999999999875 9999999999754 54 699999999


Q ss_pred             CCeEEEecCHhHHH
Q 005545          313 EGSPIYSGRAAQVM  326 (691)
Q Consensus       313 ~G~iv~~G~~~~~~  326 (691)
                      +|++++.|+++++.
T Consensus       215 ~G~i~~~g~~~~~~  228 (277)
T PRK13642        215 AGEIIKEAAPSELF  228 (277)
T ss_pred             CCEEEEeCCHHHHh
Confidence            99999999998875

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.2e-41  Score=349.72  Aligned_cols=221  Identities=29%  Similarity=0.430  Sum_probs=182.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CC---C
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GK---F  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~---~  154 (691)
                      .|+++||+++|..                     +.+|+|+|+++++||+++|+||||||||||+++|+|+.. .+   .
T Consensus         5 ~l~~~~l~~~~~~---------------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~   63 (252)
T PRK14239          5 ILQVSDLSVYYNK---------------------KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTI   63 (252)
T ss_pred             eEEEEeeEEEECC---------------------eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCc
Confidence            6899999999861                     358999999999999999999999999999999999742 23   4


Q ss_pred             ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      +|+|.++|+++..      .+++.++||+|++.+++ +||+||+.+....+ + ....+...++++++++.+++.+....
T Consensus        64 ~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~  140 (252)
T PRK14239         64 TGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKD  140 (252)
T ss_pred             cceEEECCEECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHH
Confidence            8999999998731      34668999999998887 89999998764332 1 11223344567888999987532111


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .. +..++.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+.||++
T Consensus       141 ~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i  217 (252)
T PRK14239        141 RL-HDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRT  217 (252)
T ss_pred             HH-hcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEE
Confidence            11 123357999999999999999999999999999999999999999999999975 689999999964 578899999


Q ss_pred             EEecCCeEEEecCHhHHH
Q 005545          309 VVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~  326 (691)
                      ++|++|++++.|+.+++.
T Consensus       218 ~~l~~G~i~~~g~~~~~~  235 (252)
T PRK14239        218 GFFLDGDLIEYNDTKQMF  235 (252)
T ss_pred             EEEECCEEEEeCCHHHHH
Confidence            999999999999998874

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.6e-41  Score=369.00  Aligned_cols=198  Identities=34%  Similarity=0.498  Sum_probs=175.7

Q ss_pred             ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      |+||++++||+++|+||||||||||||+|+|++ ++++|+|.++|+++..        ..++.++|++|++.+++++||+
T Consensus        15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~-~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~   93 (354)
T TIGR02142        15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLT-RPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVR   93 (354)
T ss_pred             EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHH
Confidence            999999999999999999999999999999977 4679999999998742        2456899999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                      ||+.|+....     ...+..++++++++.+||.+..++.+     +.|||||||||+|||||+.+|++|||||||+|||
T Consensus        94 enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD  163 (354)
T TIGR02142        94 GNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLP-----GRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALD  163 (354)
T ss_pred             HHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCC
Confidence            9998865321     12334557889999999988777765     4699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          270 STTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|+++++..
T Consensus       164 ~~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~  221 (354)
T TIGR02142       164 DPRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVWA  221 (354)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHhc
Confidence            99999999999999875 899999999964 5788999999999999999999988854

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=1.5e-41  Score=341.23  Aligned_cols=194  Identities=42%  Similarity=0.688  Sum_probs=166.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCce
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSG  156 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G  156 (691)
                      ++.|+||+|.|+.+.                 +++.+|+|+||++++||+++|+||||||||||+++|+|+..+  +.+|
T Consensus         3 ~~~~~~~~~~~~~~~-----------------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G   65 (202)
T cd03233           3 TLSWRNISFTTGKGR-----------------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG   65 (202)
T ss_pred             eEEEEccEEEeccCC-----------------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce
Confidence            589999999998421                 235699999999999999999999999999999999998742  6799


Q ss_pred             EEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          157 KITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       157 ~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      +|.++|+++..   ..++.++|++|++.+++.+||+||+.+.+...                          .++     
T Consensus        66 ~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~-----  114 (202)
T cd03233          66 DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNE-----  114 (202)
T ss_pred             EEEECCEECccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------ccc-----
Confidence            99999998753   35668999999999999999999998753210                          222     


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      .+..||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++ +.|+|+++|+...++.+.||++++|+
T Consensus       115 ~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~  194 (202)
T cd03233         115 FVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLY  194 (202)
T ss_pred             chhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEE
Confidence            23569999999999999999999999999999999999999999999999875 67777776664556889999999999


Q ss_pred             CCeEEEec
Q 005545          313 EGSPIYSG  320 (691)
Q Consensus       313 ~G~iv~~G  320 (691)
                      +|++++.|
T Consensus       195 ~G~i~~~g  202 (202)
T cd03233         195 EGRQIYYG  202 (202)
T ss_pred             CCEEEecC
Confidence            99998765

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.6e-41  Score=349.31  Aligned_cols=220  Identities=27%  Similarity=0.416  Sum_probs=184.0

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC----
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK----  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~----  153 (691)
                      +.|+++||+++|+.                     +.+|+|+||+|++||+++|+||||||||||+|+|+|++.+.    
T Consensus         3 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~   61 (252)
T PRK14272          3 LLLSAQDVNIYYGD---------------------KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGAR   61 (252)
T ss_pred             EEEEEeeeEEEECC---------------------EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCC
Confidence            46899999999861                     35899999999999999999999999999999999986432    


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC----
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT----  223 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~----  223 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++.+|+.||+.+.....  ....+++..+.++++++.+++.    
T Consensus        62 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~  139 (252)
T PRK14272         62 VTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVK  139 (252)
T ss_pred             CceeEEECCEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhh
Confidence            38999999998742      34567999999999999999999998764322  1112333445677777777763    


Q ss_pred             ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                      +..++.     ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus       140 ~~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~  212 (252)
T PRK14272        140 DRLKTP-----ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAAR  212 (252)
T ss_pred             hhhcCC-----cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHH
Confidence            233443     357999999999999999999999999999999999999999999999975 699999999965 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .||++++|++|++++.|+++++..
T Consensus       213 ~~d~i~~l~~G~i~~~~~~~~~~~  236 (252)
T PRK14272        213 VSDTTSFFLVGDLVEHGPTDQLFT  236 (252)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999999988743

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=1.2e-41  Score=376.59  Aligned_cols=233  Identities=27%  Similarity=0.417  Sum_probs=197.3

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      ....++++||+..|..+.+  ++        .+..+...+++||||++++||++||+|+||||||||.|+|+|+.. |.+
T Consensus       277 ~~~ll~V~~l~k~y~~~~~--~~--------~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~-P~~  345 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKG--LF--------VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP-PSS  345 (539)
T ss_pred             cCceeEeeeeeeeeccccc--cc--------cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC-CCC
Confidence            4567999999999985431  11        011234679999999999999999999999999999999999874 689


Q ss_pred             eEEEECCEeCC------hhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cc
Q 005545          156 GKITYNGRQFS------SSLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CR  226 (691)
Q Consensus       156 G~I~~~G~~~~------~~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~  226 (691)
                      |+|.++|.+..      ...++++.+|+||+.  +.|.+||++.|........  .....++++++.++++.+||.. ..
T Consensus       346 G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~--~~~~~~~~~rv~~ll~~VgL~~~~l  423 (539)
T COG1123         346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHG--GGSGAERRARVAELLELVGLPPEFL  423 (539)
T ss_pred             ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhc--ccchHHHHHHHHHHHHHcCCCHHHH
Confidence            99999998731      135678999999975  9999999999987655432  2235666778999999999985 34


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~  305 (691)
                      ++     ++.+||||||||++|||||+.+|++|++|||||.||+..+.+++++|++++++ |.|.|++|||. ..+.++|
T Consensus       424 ~r-----yP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~~i~  497 (539)
T COG1123         424 DR-----YPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVRYIA  497 (539)
T ss_pred             hc-----CchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHhhC
Confidence            43     45689999999999999999999999999999999999999999999999975 99999999996 5689999


Q ss_pred             CEEEEecCCeEEEecCHhHHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |||++|++|++|+.|+.+++++
T Consensus       498 drv~vm~~G~iVE~G~~~~v~~  519 (539)
T COG1123         498 DRVAVMYDGRIVEEGPTEKVFE  519 (539)
T ss_pred             ceEEEEECCeEEEeCCHHHHhc
Confidence            9999999999999999998854

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-41  Score=348.19  Aligned_cols=222  Identities=24%  Similarity=0.402  Sum_probs=184.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~  154 (691)
                      .|+++||++.|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|+..+    +.
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~   61 (250)
T PRK14262          3 IIEIENFSAYYGE---------------------KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRV   61 (250)
T ss_pred             eEEEEeeEEEeCC---------------------ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCc
Confidence            5899999999851                     3589999999999999999999999999999999997642    37


Q ss_pred             ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      +|+|.++|.++..      ..++.++|++|++.+++ .||+||+.+.....  .....+...+.++++++.+|+.+..+.
T Consensus        62 ~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~  138 (250)
T PRK14262         62 EGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIH--GVKSKHKLDRIVEESLKKAALWDEVKS  138 (250)
T ss_pred             ceEEEECCEEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHcCCCchhHH
Confidence            9999999988742      24568999999999887 89999998765322  111233345567888999998542111


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      . .+..+++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++
T Consensus       139 ~-~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i  215 (250)
T PRK14262        139 E-LNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYI  215 (250)
T ss_pred             H-HhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEE
Confidence            1 1223467999999999999999999999999999999999999999999999975 789999999965 577899999


Q ss_pred             EEecCCeEEEecCHhHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++|+++..|+++++.+
T Consensus       216 ~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14262        216 AFMYRGELIEYGPTREIVE  234 (250)
T ss_pred             EEEECCEEEEecCHHHHHh
Confidence            9999999999999988753

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.1e-41  Score=347.96  Aligned_cols=217  Identities=23%  Similarity=0.402  Sum_probs=182.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C---C
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K---F  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~---~  154 (691)
                      .|+++||++.|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|+..+ +   +
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~   61 (250)
T PRK14240          3 KISVKDLDLFYGD---------------------FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKI   61 (250)
T ss_pred             eEEEEEEEEEECC---------------------ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCC
Confidence            4889999999861                     2489999999999999999999999999999999997532 2   6


Q ss_pred             ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----
Q 005545          155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR----  224 (691)
Q Consensus       155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----  224 (691)
                      +|+|.++|+++..      ..++.++|++|++.+++ +|++||+.+....+  .....++..++++++++.+++.+    
T Consensus        62 ~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~  138 (250)
T PRK14240         62 EGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTH--GIKDKKKLDEIVEKSLKGAALWDEVKD  138 (250)
T ss_pred             ceEEEECCEEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhHH
Confidence            8999999998742      34668999999998887 89999998865332  11123344567888899988743    


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~  304 (691)
                      ..++.     ++.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.
T Consensus       139 ~~~~~-----~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~  211 (250)
T PRK14240        139 RLKKS-----ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRI  211 (250)
T ss_pred             HHhcC-----CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhh
Confidence            23333     357999999999999999999999999999999999999999999999965 799999999964 57889


Q ss_pred             CCEEEEecCCeEEEecCHhHHH
Q 005545          305 FDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       305 ~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +|++++|++|++++.|+++++.
T Consensus       212 ~d~v~~l~~G~i~~~~~~~~~~  233 (250)
T PRK14240        212 SDKTAFFLNGEIVEFGDTVDLF  233 (250)
T ss_pred             CCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999988774

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=100.00  E-value=2e-41  Score=374.82  Aligned_cols=227  Identities=30%  Similarity=0.452  Sum_probs=197.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---Cc
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK---FS  155 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~---~~  155 (691)
                      .|+++||+.+|...+                 +...+++||||++++||++||+|.|||||||+.++|.|+++..   .+
T Consensus         5 lL~V~nL~v~~~~~~-----------------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~   67 (539)
T COG1123           5 LLEVENLTVEFATDG-----------------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITS   67 (539)
T ss_pred             eEEEeceEEEEecCC-----------------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccc
Confidence            799999999998531                 1246999999999999999999999999999999999988533   48


Q ss_pred             eEEEECCEeCCh-------h-ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545          156 GKITYNGRQFSS-------S-LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       156 G~I~~~G~~~~~-------~-~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~  225 (691)
                      |+|.++|+++..       . ..+.|+||||++.  +.|-+||.+.+.-....+.  ..+.++.++++.++|+++||++.
T Consensus        68 G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~  145 (539)
T COG1123          68 GEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDP  145 (539)
T ss_pred             eEEEECCcchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCCh
Confidence            999999997632       1 2358999999974  7888999998876655442  33478888899999999999876


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhc
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~  304 (691)
                      ...   +.++.+|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.++
T Consensus       146 ~~~---~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~  221 (539)
T COG1123         146 ERR---DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAEL  221 (539)
T ss_pred             hhh---ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHh
Confidence            654   456789999999999999999999999999999999999999999999999996 5999999999974 68899


Q ss_pred             CCEEEEecCCeEEEecCHhHHHHH
Q 005545          305 FDKVVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       305 ~D~v~~L~~G~iv~~G~~~~~~~~  328 (691)
                      ||||+||++|++++.|+++++++.
T Consensus       222 aDrv~Vm~~G~iVE~G~~~~i~~~  245 (539)
T COG1123         222 ADRVVVMYKGEIVETGPTEEILSN  245 (539)
T ss_pred             cCeEEEEECCEEEEecCHHHHHhc
Confidence            999999999999999999999864

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5.2e-41  Score=351.60  Aligned_cols=218  Identities=23%  Similarity=0.378  Sum_probs=182.2

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~  153 (691)
                      ..|+++||+++|+.                     +.+|+|+|+++++||+++|+|+||||||||+++|+|+..  +  +
T Consensus        20 ~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~   78 (268)
T PRK14248         20 HILEVKDLSIYYGE---------------------KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR   78 (268)
T ss_pred             ceEEEEEEEEEeCC---------------------ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCC
Confidence            36999999999861                     358999999999999999999999999999999999652  1  5


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---  224 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---  224 (691)
                      ++|+|.++|+++..      ..++.++|++|++.+++. ||+||+.+.....  .........+.+.+.++.+++.+   
T Consensus        79 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  155 (268)
T PRK14248         79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVK  155 (268)
T ss_pred             CceEEEECCEEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchH
Confidence            79999999998742      245689999999988875 9999998764322  11122233456778888888852   


Q ss_pred             -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                       ..++.     ++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. ++.+
T Consensus       156 ~~~~~~-----~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~  228 (268)
T PRK14248        156 DRLHSS-----ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALR  228 (268)
T ss_pred             HHHhcC-----cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHH
Confidence             23333     357999999999999999999999999999999999999999999999976 689999999964 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +||++++|++|++++.|+++++.
T Consensus       229 ~~d~v~~l~~G~i~~~~~~~~~~  251 (268)
T PRK14248        229 VSDRTAFFLNGDLVEYDQTEQIF  251 (268)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999988774

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-41  Score=355.11  Aligned_cols=219  Identities=29%  Similarity=0.410  Sum_probs=183.8

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC-----
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF-----  154 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~-----  154 (691)
                      |+++||+++|.                     .+.+|+|+||+|++||+++|+||||||||||+|+|+|+++ +.     
T Consensus         2 l~~~nl~~~~~---------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~-p~~~~~~   59 (272)
T PRK13547          2 LTADHLHVARR---------------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT-GGGAPRG   59 (272)
T ss_pred             eEEEEEEEEEC---------------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-Ccccccc
Confidence            78999999885                     1358999999999999999999999999999999999874 44     


Q ss_pred             ---ceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccc
Q 005545          155 ---SGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCR  226 (691)
Q Consensus       155 ---~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~  226 (691)
                         +|+|.++|+++..    ..++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..
T Consensus        60 ~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~  139 (272)
T PRK13547         60 ARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALV  139 (272)
T ss_pred             cCCceEEEECCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhh
Confidence               8999999998742    3455789999998766679999999875321100 0111123445688899999998766


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQ  296 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~  296 (691)
                      ++.+     ..|||||||||+|||+|+         .+|++|+|||||+|||+.++..+.+.|++++++ |+|||+++|+
T Consensus       140 ~~~~-----~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~  214 (272)
T PRK13547        140 GRDV-----TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHD  214 (272)
T ss_pred             cCCc-----ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            6655     469999999999999999         599999999999999999999999999999875 8999999999


Q ss_pred             CchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          297 PSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       297 p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +. .+.++||++++|++|++++.|+++++.
T Consensus       215 ~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  243 (272)
T PRK13547        215 PN-LAARHADRIAMLADGAIVAHGAPADVL  243 (272)
T ss_pred             HH-HHHHhCCEEEEEECCeEEEecCHHHHc
Confidence            65 577899999999999999999988763

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-42  Score=328.29  Aligned_cols=211  Identities=30%  Similarity=0.493  Sum_probs=187.3

Q ss_pred             CccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----------------hc
Q 005545          107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----------------SL  169 (691)
Q Consensus       107 ~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----------------~~  169 (691)
                      .|+|+...+|++||++.++|+++.|||.|||||||+|+||.- +..|..|.|.+||+.+.-                 .+
T Consensus        13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~-LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~   91 (256)
T COG4598          13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINF-LEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRL   91 (256)
T ss_pred             HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHh-hcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHH
Confidence            345667789999999999999999999999999999999986 446789999999987630                 24


Q ss_pred             cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHH
Q 005545          170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIG  249 (691)
Q Consensus       170 ~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA  249 (691)
                      |.+.|+|+|..+++.++||.||+.-+..--  -..++.+..++++..|.++|+.+..+.+..     .|||||+||++||
T Consensus        92 Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV--Lg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~-----~LSGGQQQR~aIA  164 (256)
T COG4598          92 RTRLGMVFQHFNLWSHMTVLENVIEAPVHV--LGVSKAEAIERAEKYLAKVGIAEKADAYPA-----HLSGGQQQRVAIA  164 (256)
T ss_pred             HHHhhHhhhhcchhHHHHHHHHHHhcchHh--hcCCHHHHHHHHHHHHHHhCchhhhhcCcc-----ccCchHHHHHHHH
Confidence            557999999999999999999987543211  145788888999999999999998886554     6999999999999


Q ss_pred             HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          250 QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       250 ~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      |||+.+|+++++|||||+|||.-.-++++.+++|+++|+|++++||.+. .+.+...+|++|++|.+-+.|++++++
T Consensus       165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~fLh~G~iEE~G~P~qvf  240 (256)
T COG4598         165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIFLHQGKIEEEGPPEQVF  240 (256)
T ss_pred             HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEEeecceecccCChHHHh
Confidence            9999999999999999999999999999999999999999999999964 578899999999999999999999984

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.8e-41  Score=347.93  Aligned_cols=221  Identities=23%  Similarity=0.379  Sum_probs=182.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~  154 (691)
                      .|+++||++.|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|+.++    ++
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~   61 (249)
T PRK14253          3 KFNIENLDLFYGE---------------------NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKI   61 (249)
T ss_pred             eEEEeccEEEECC---------------------eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCC
Confidence            5889999998861                     3589999999999999999999999999999999997643    35


Q ss_pred             ceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545          155 SGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV  229 (691)
Q Consensus       155 ~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~  229 (691)
                      +|+|.++|.++..     ..++.++|++|++.+++ .||.||+.+.....  ....++...+++.+.++.+++.+.....
T Consensus        62 ~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~  138 (249)
T PRK14253         62 TGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDR  138 (249)
T ss_pred             ceEEEECCEEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHH
Confidence            8999999988731     34668999999999887 89999998764321  1112333445677888888875322111


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      . +..+..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+++
T Consensus       139 ~-~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~  215 (249)
T PRK14253        139 L-KSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTA  215 (249)
T ss_pred             h-hcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEE
Confidence            1 123357999999999999999999999999999999999999999999999976 589999999964 6788999999


Q ss_pred             EecCCeEEEecCHhHHH
Q 005545          310 VLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~  326 (691)
                      +|++|++++.|+.+++.
T Consensus       216 ~l~~G~i~~~g~~~~~~  232 (249)
T PRK14253        216 FFLMGELVEHDDTQVIF  232 (249)
T ss_pred             EEECCEEEEeCCHHHHH
Confidence            99999999999988763

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=6.9e-42  Score=395.78  Aligned_cols=216  Identities=26%  Similarity=0.407  Sum_probs=181.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+|+||+|.+..                    ++.+|+|+|+++++||.+||+||||||||||+++|+|.+  |.+|+
T Consensus       348 ~~i~~~~vsf~~~~--------------------~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~--p~~G~  405 (588)
T PRK11174        348 VTIEAEDLEILSPD--------------------GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL--PYQGS  405 (588)
T ss_pred             ceEEEEeeEEeccC--------------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC--CCCcE
Confidence            36999999987642                    135899999999999999999999999999999999976  46999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRNS  228 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~  228 (691)
                      |.+||+++.+    .+|+.++||+|++.+|+ -|++|||.++.    | +.++++..+.+     ++.++  .|++..||
T Consensus       406 I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-~TI~eNI~~g~----~-~~~~eei~~al~~a~l~~~i~--~lp~G~dT  477 (588)
T PRK11174        406 LKINGIELRELDPESWRKHLSWVGQNPQLPH-GTLRDNVLLGN----P-DASDEQLQQALENAWVSEFLP--LLPQGLDT  477 (588)
T ss_pred             EEECCEecccCCHHHHHhheEEecCCCcCCC-cCHHHHhhcCC----C-CCCHHHHHHHHHHhCHHHHHH--hccccccc
Confidence            9999998863    57889999999999996 59999998852    1 23444333222     22222  24567789


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .+|+. ...||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++  ..+.+|+|
T Consensus       478 ~vge~-G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~-~~TvIiItHrl~--~i~~aD~I  553 (588)
T PRK11174        478 PIGDQ-AAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR-RQTTLMVTHQLE--DLAQWDQI  553 (588)
T ss_pred             ccccC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecChH--HHHhCCEE
Confidence            99863 466999999999999999999999999999999999999999999999864 799999999974  35789999


Q ss_pred             EEecCCeEEEecCHhHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++|++++.|+++++.+
T Consensus       554 ivl~~G~i~e~G~~~eL~~  572 (588)
T PRK11174        554 WVMQDGQIVQQGDYAELSQ  572 (588)
T ss_pred             EEEeCCeEeecCCHHHHHh
Confidence            9999999999999999864

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.3e-41  Score=347.56  Aligned_cols=223  Identities=22%  Similarity=0.368  Sum_probs=182.8

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~  153 (691)
                      +--+++||+++|+                     .+.+|+|+||+|++||+++|+|+||||||||+++|+|+..  +  +
T Consensus         4 ~~~~~~~l~~~~~---------------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~   62 (251)
T PRK14244          4 IHASVKNLNLWYG---------------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCK   62 (251)
T ss_pred             eEEEeeeEEEEEC---------------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCC
Confidence            3457899999885                     1358999999999999999999999999999999999763  1  3


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++. ||+||+.+....+ .......+..+.+.++++.+||.+...
T Consensus        63 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~  140 (251)
T PRK14244         63 VKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELG  140 (251)
T ss_pred             cceEEEECCEehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhh
Confidence            69999999988642      246689999999988875 9999998764332 111123344456788999999965321


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +... ..++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++. .+.++||+
T Consensus       141 ~~~~-~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~  217 (251)
T PRK14244        141 DRLK-DSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDR  217 (251)
T ss_pred             hHhh-cChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCE
Confidence            1111 23357999999999999999999999999999999999999999999999965 899999999965 57789999


Q ss_pred             EEEecCCeEEEecCHhHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++|++++.|+++++.
T Consensus       218 i~~l~~G~i~~~~~~~~~~  236 (251)
T PRK14244        218 VAFFQSGRIVEYNTTQEIF  236 (251)
T ss_pred             EEEEECCEEEEeCCHHHHh
Confidence            9999999999999988774

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=100.00  E-value=5.8e-41  Score=349.28  Aligned_cols=218  Identities=27%  Similarity=0.400  Sum_probs=183.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus         6 ~l~~~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i   63 (258)
T PRK11701          6 LLSVRGLTKLYGP---------------------RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL-APDAGEV   63 (258)
T ss_pred             eEEEeeeEEEcCC---------------------ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence            6999999999861                     35899999999999999999999999999999999977 4779999


Q ss_pred             EECCEe-----CCh----h----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545          159 TYNGRQ-----FSS----S----LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       159 ~~~G~~-----~~~----~----~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~  223 (691)
                      .++|++     +..    .    .++.++|++|++.  +++.+|++||+.+..... . .....+..+++.++++.+++.
T Consensus        64 ~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~  141 (258)
T PRK11701         64 HYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEID  141 (258)
T ss_pred             EECCccccccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCC
Confidence            999987     532    1    2457999999974  677889999987643211 1 112233456788999999996


Q ss_pred             c-cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545          224 R-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL  301 (691)
Q Consensus       224 ~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i  301 (691)
                      + ..++.+     +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||++. .+
T Consensus       142 ~~~~~~~~-----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~  215 (258)
T PRK11701        142 AARIDDLP-----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VA  215 (258)
T ss_pred             hhHHhCCC-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HH
Confidence            4 455544     579999999999999999999999999999999999999999999999874 899999999964 57


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      .+.+|++++|++|++++.|+++++.
T Consensus       216 ~~~~d~i~~l~~g~i~~~~~~~~~~  240 (258)
T PRK11701        216 RLLAHRLLVMKQGRVVESGLTDQVL  240 (258)
T ss_pred             HHhcCEEEEEECCEEEEeCCHHHHh
Confidence            7899999999999999999988764

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=6.6e-41  Score=347.29  Aligned_cols=218  Identities=28%  Similarity=0.441  Sum_probs=182.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~  153 (691)
                      ..|+++||+++|+.                     +.+|+|+|++|++||+++|+|+||||||||+++|+|+..+    +
T Consensus         3 ~~l~~~~l~~~~~~---------------------~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~   61 (251)
T PRK14251          3 NIISAKDVHLSYGN---------------------YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK   61 (251)
T ss_pred             ceEEEEeeEEEECC---------------------eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCC
Confidence            36899999999861                     3589999999999999999999999999999999997642    3


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---  224 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---  224 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++ .||+||+.+.....  .....+...++++++++.+++..   
T Consensus        62 ~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  138 (251)
T PRK14251         62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETK  138 (251)
T ss_pred             cceEEEECCEEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchH
Confidence            69999999998742      24667999999998886 79999998764322  11122333456788899999842   


Q ss_pred             -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                       ..+.     .++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus       139 ~~~~~-----~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~  211 (251)
T PRK14251        139 DNLDR-----NAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGR  211 (251)
T ss_pred             HHhcc-----ChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHh
Confidence             2333     3357999999999999999999999999999999999999999999999965 689999999964 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      .+|++++|++|+++..|+++++.
T Consensus       212 ~~d~i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14251        212 ISDQTAFLMNGDLIEAGPTEEMF  234 (251)
T ss_pred             hcCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999988874

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=2.5e-41  Score=383.82  Aligned_cols=219  Identities=25%  Similarity=0.442  Sum_probs=188.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||||+|+|++ ++++|+|
T Consensus         4 ~i~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~i   61 (501)
T PRK10762          4 LLQLKGIDKAFPG---------------------VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIY-TRDAGSI   61 (501)
T ss_pred             eEEEeeeEEEeCC---------------------eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            5899999999851                     35899999999999999999999999999999999987 4679999


Q ss_pred             EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      .++|+++..    . .++.++||+|++.+++.+||+||+.++...+.. ......+.+++++++++.+||.+..++.++ 
T Consensus        62 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-  140 (501)
T PRK10762         62 LYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-  140 (501)
T ss_pred             EECCEECCCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-
Confidence            999998742    1 246799999999999999999999886432110 112334445678899999999887777664 


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                          .|||||||||+||+||+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. ++.++||++++|+
T Consensus       141 ----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~  215 (501)
T PRK10762        141 ----ELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFR  215 (501)
T ss_pred             ----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEe
Confidence                69999999999999999999999999999999999999999999999878999999999964 5788999999999


Q ss_pred             CCeEEEecCHhHH
Q 005545          313 EGSPIYSGRAAQV  325 (691)
Q Consensus       313 ~G~iv~~G~~~~~  325 (691)
                      +|+++..|+++++
T Consensus       216 ~G~i~~~~~~~~~  228 (501)
T PRK10762        216 DGQFIAEREVADL  228 (501)
T ss_pred             CCEEEEecCcCcC
Confidence            9999999987654

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.8e-41  Score=352.78  Aligned_cols=221  Identities=23%  Similarity=0.377  Sum_probs=184.1

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C-
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G-  152 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~-  152 (691)
                      ....|+++||+++|..                     +.+|+|+|++|++||+++|+||||||||||+++|+|+..  + 
T Consensus        36 ~~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~   94 (286)
T PRK14275         36 GKPHVVAKNFSIYYGE---------------------FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPS   94 (286)
T ss_pred             CceEEEEeeeEEEECC---------------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence            3457999999999851                     248999999999999999999999999999999999752  2 


Q ss_pred             -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--
Q 005545          153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT--  223 (691)
Q Consensus       153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--  223 (691)
                       +.+|+|.++|+++..      ..++.++|++|++.+++. ||.||+.+....+  ...+.....+++.++++.+|+.  
T Consensus        95 ~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~  171 (286)
T PRK14275         95 CHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLH--GINDKKQLEEIVEKSLRKAALWDE  171 (286)
T ss_pred             CCCceEEEECCEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhc--CCCcHHHHHHHHHHHHHHhCCccc
Confidence             379999999988642      246689999999988875 9999999865332  1112233345677888988874  


Q ss_pred             --ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545          224 --RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL  301 (691)
Q Consensus       224 --~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i  301 (691)
                        +..++.     +..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+
T Consensus       172 l~~~~~~~-----~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~  244 (286)
T PRK14275        172 VSDRLDKN-----ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QA  244 (286)
T ss_pred             hhhHhhCC-----hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HH
Confidence              333433     357999999999999999999999999999999999999999999999976 589999999964 57


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .++||++++|++|++++.|+++++..
T Consensus       245 ~~~~d~i~~L~~G~i~~~g~~~~~~~  270 (286)
T PRK14275        245 SRVSDYTMFFYEGVLVEHAPTAQLFT  270 (286)
T ss_pred             HHhCCEEEEEECCEEEEeCCHHHHHh
Confidence            78999999999999999999888743

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-41  Score=384.44  Aligned_cols=220  Identities=25%  Similarity=0.422  Sum_probs=189.0

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+
T Consensus         4 ~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~-~p~~G~   61 (510)
T PRK09700          4 PYISMAGIGKSFGP---------------------VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIH-EPTKGT   61 (510)
T ss_pred             ceEEEeeeEEEcCC---------------------eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCc-CCCccE
Confidence            46999999999851                     35899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhc--C-CC-CCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLR--L-PK-KLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~--~-~~-~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      |.++|+++..     ..++.++||+|++.+++.+||+||+.++....  . .. ....++..++++++++.+||.+..++
T Consensus        62 i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~  141 (510)
T PRK09700         62 ITINNINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDE  141 (510)
T ss_pred             EEECCEECCCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCccc
Confidence            9999998753     12457999999999999999999998753210  0 00 01234445678899999999887777


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .++     +|||||||||+||++|+.+|++|||||||+|||+.++..+.++|++++++|+|||++||++. .+..+||++
T Consensus       142 ~~~-----~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v  215 (510)
T PRK09700        142 KVA-----NLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRY  215 (510)
T ss_pred             chh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence            664     69999999999999999999999999999999999999999999999888999999999964 577899999


Q ss_pred             EEecCCeEEEecCHhHH
Q 005545          309 VVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~  325 (691)
                      ++|++|++++.|+++++
T Consensus       216 ~~l~~G~i~~~g~~~~~  232 (510)
T PRK09700        216 TVMKDGSSVCSGMVSDV  232 (510)
T ss_pred             EEEECCEEeeecchhhC
Confidence            99999999999988765

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=9.7e-41  Score=351.08  Aligned_cols=224  Identities=27%  Similarity=0.424  Sum_probs=187.0

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----  152 (691)
                      ...|+++||+++|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|++++    
T Consensus        19 ~~~l~i~nl~~~~~~---------------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~   77 (276)
T PRK14271         19 APAMAAVNLTLGFAG---------------------KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGY   77 (276)
T ss_pred             CcEEEEeeEEEEECC---------------------EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCC
Confidence            347899999999962                     3589999999999999999999999999999999998743    


Q ss_pred             CCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          153 KFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      +.+|+|.++|.++..     ..++.++|++|++.+++ .||+||+.+.....  ...+..+..+++.++++.++|.+..+
T Consensus        78 ~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  154 (276)
T PRK14271         78 RYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVK  154 (276)
T ss_pred             CCceEEEECCEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhh
Confidence            469999999988742     34678999999998887 89999998764321  11234444556788899999875322


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +... ..++.||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|+++++ ++|||++||++. ++.+++|+
T Consensus       155 ~~l~-~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dr  231 (276)
T PRK14271        155 DRLS-DSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDR  231 (276)
T ss_pred             hHhh-CCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCE
Confidence            2111 23457999999999999999999999999999999999999999999999986 489999999964 57889999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++.+
T Consensus       232 i~~l~~G~i~~~g~~~~~~~  251 (276)
T PRK14271        232 AALFFDGRLVEEGPTEQLFS  251 (276)
T ss_pred             EEEEECCEEEEeCCHHHHHh
Confidence            99999999999999988743

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=100.00  E-value=4.4e-41  Score=340.43  Aligned_cols=190  Identities=31%  Similarity=0.485  Sum_probs=166.4

Q ss_pred             ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCHH
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      |+|+++++ |+++|+||||||||||+++|+|++ ++.+|+|.++|.++..        ..++.++|++|++.+++.+|++
T Consensus        16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~   93 (214)
T cd03297          16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLE-KPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVR   93 (214)
T ss_pred             CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHH
Confidence            99999999 999999999999999999999987 4679999999988641        2356899999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                      ||+.+.....     .....+++++++++.+|+.+..++.+     +.||||||||++||++|+.+|++|+|||||+|||
T Consensus        94 ~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD  163 (214)
T cd03297          94 ENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALD  163 (214)
T ss_pred             HHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence            9998764321     22334567889999999987666655     4699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545          270 STTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG  320 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G  320 (691)
                      +.++..+.+.|++++++ |+|||++||++. ++.+++|++++|++|++++.|
T Consensus       164 ~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g  214 (214)
T cd03297         164 RALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG  214 (214)
T ss_pred             HHHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence            99999999999999875 899999999964 577899999999999998765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=349.64  Aligned_cols=222  Identities=24%  Similarity=0.363  Sum_probs=184.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~  153 (691)
                      ..|+++|++++|..                     +.+|+|+||+|++||+++|+||||||||||+++|+|++.+    +
T Consensus        24 ~~l~~~nl~~~~~~---------------------~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~   82 (272)
T PRK14236         24 TALEVRNLNLFYGD---------------------KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR   82 (272)
T ss_pred             cEEEEEEEEEEECC---------------------eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCC
Confidence            36999999999851                     3589999999999999999999999999999999998643    4


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++. ||+||+.+.....  ....+++..++++++++.+++.+...
T Consensus        83 ~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~  159 (272)
T PRK14236         83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVK  159 (272)
T ss_pred             CceEEEECCEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHH
Confidence            79999999998742      346789999999998886 9999998764332  11123334456788899999863211


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.. +..++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. ++.+.||+
T Consensus       160 ~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~  236 (272)
T PRK14236        160 DRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDY  236 (272)
T ss_pred             HHh-hCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCE
Confidence            111 123357999999999999999999999999999999999999999999999986 689999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++|++++.|+++++.
T Consensus       237 i~~l~~G~i~~~g~~~~~~  255 (272)
T PRK14236        237 TAFMYMGKLVEYGDTDTLF  255 (272)
T ss_pred             EEEEECCEEEecCCHHHHh
Confidence            9999999999999988774

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=100.00  E-value=5e-41  Score=334.76  Aligned_cols=188  Identities=46%  Similarity=0.792  Sum_probs=165.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGK  157 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~  157 (691)
                      .|+++|+++.|+...                 +.+.+|+|+|+++++||+++|+||||||||||+++|+|+.. ++.+|+
T Consensus         3 ~l~~~~l~~~~~~~~-----------------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~   65 (192)
T cd03232           3 VLTWKNLNYTVPVKG-----------------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE   65 (192)
T ss_pred             EEEEeeeEEEecCCC-----------------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Confidence            589999999996310                 11458999999999999999999999999999999999753 467999


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      |.++|+++....++.++|++|++.+++.+||+||+.+....                   +                  .
T Consensus        66 i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~  108 (192)
T cd03232          66 ILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------G  108 (192)
T ss_pred             EEECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------c
Confidence            99999987655567899999999999999999999864310                   0                  4


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-CeE
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-GSP  316 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-G~i  316 (691)
                      ||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++..++.+.||++++|++ |++
T Consensus       109 LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i  188 (192)
T cd03232         109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKT  188 (192)
T ss_pred             CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeE
Confidence            8999999999999999999999999999999999999999999999877999999999976446789999999999 999


Q ss_pred             EEec
Q 005545          317 IYSG  320 (691)
Q Consensus       317 v~~G  320 (691)
                      ++.|
T Consensus       189 ~~~g  192 (192)
T cd03232         189 VYFG  192 (192)
T ss_pred             EeCC
Confidence            9876

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=100.00  E-value=1.5e-41  Score=349.09  Aligned_cols=214  Identities=29%  Similarity=0.512  Sum_probs=172.5

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|...                   .+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 i~~~~l~~~~~~~-------------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i~   60 (237)
T cd03252           1 ITFEHVRFRYKPD-------------------GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFY-VPENGRVL   60 (237)
T ss_pred             CEEEEEEEecCCC-------------------CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEEE
Confidence            4689999988521                   135899999999999999999999999999999999987 46799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccc
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-----EQAEMVIMEL--GLTRCRNS  228 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~  228 (691)
                      ++|.++..    ..++.++|++|++.+++ .||.||+.+...     ........     ..+.++++.+  ++....+.
T Consensus        61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  134 (237)
T cd03252          61 VDGHDLALADPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGE  134 (237)
T ss_pred             ECCeehHhcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhc
Confidence            99988742    34678999999998775 699999976421     11111111     1123344444  33333333


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                           .++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+ ..||++
T Consensus       135 -----~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~-~~~d~v  206 (237)
T cd03252         135 -----QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLS-TV-KNADRI  206 (237)
T ss_pred             -----CCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HH-HhCCEE
Confidence                 3357999999999999999999999999999999999999999999999975 899999999975 45 569999


Q ss_pred             EEecCCeEEEecCHhHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++|++++.|+++++.+
T Consensus       207 ~~l~~G~i~~~~~~~~~~~  225 (237)
T cd03252         207 IVMEKGRIVEQGSHDELLA  225 (237)
T ss_pred             EEEECCEEEEEcCHHHHHh
Confidence            9999999999999888754

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=100.00  E-value=1.1e-40  Score=346.59  Aligned_cols=216  Identities=23%  Similarity=0.358  Sum_probs=181.8

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK---  153 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~---  153 (691)
                      |..|+++||+++|.                      +.+|+|+|+++++||+++|+||||||||||+++|+|+.+ +   
T Consensus         2 ~~~l~~~~l~~~~~----------------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-~~~~   58 (254)
T PRK10418          2 PQQIELRNIALQAA----------------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP-AGVR   58 (254)
T ss_pred             CcEEEEeCeEEEec----------------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCCC
Confidence            45799999999882                      248999999999999999999999999999999999874 4   


Q ss_pred             -CceEEEECCEeCCh-h-ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---c
Q 005545          154 -FSGKITYNGRQFSS-S-LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---C  225 (691)
Q Consensus       154 -~~G~I~~~G~~~~~-~-~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---~  225 (691)
                       ++|+|.++|+++.. . .++.++||+|++.  +.+.+|+.+++.+.+...   ....  ..+++.++++.++|.+   .
T Consensus        59 ~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~  133 (254)
T PRK10418         59 QTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARV  133 (254)
T ss_pred             CcCCEEEECCeeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhh
Confidence             79999999998753 2 2357999999974  456689999987643221   1112  2256888999999975   2


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhc
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~  304 (691)
                      .++.+     +.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++||++. ++.++
T Consensus       134 ~~~~~-----~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~  207 (254)
T PRK10418        134 LKLYP-----FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARL  207 (254)
T ss_pred             hhcCC-----cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHh
Confidence            34443     579999999999999999999999999999999999999999999999864 899999999964 57789


Q ss_pred             CCEEEEecCCeEEEecCHhHHH
Q 005545          305 FDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       305 ~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +|++++|++|++++.|+++++.
T Consensus       208 ~d~v~~l~~G~i~~~~~~~~~~  229 (254)
T PRK10418        208 ADDVAVMSHGRIVEQGDVETLF  229 (254)
T ss_pred             CCEEEEEECCEEEEecCHHHHh
Confidence            9999999999999999988874

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=347.28  Aligned_cols=217  Identities=25%  Similarity=0.430  Sum_probs=183.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--C--C
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--K--F  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~--~  154 (691)
                      .|+++||++.|..                     +.+|+|+|+++++||+++|+|+||||||||+|+|+|++++  +  +
T Consensus         7 ~l~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~   65 (259)
T PRK14260          7 AIKVKDLSFYYNT---------------------SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKV   65 (259)
T ss_pred             eEEEEEEEEEECC---------------------eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCcc
Confidence            6899999999861                     3489999999999999999999999999999999997642  2  4


Q ss_pred             ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc----
Q 005545          155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR----  224 (691)
Q Consensus       155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~----  224 (691)
                      +|+|.++|+++..      ..++.++|++|++.+++ +||+||+.+....+  ....+.+..++++++++.+++.+    
T Consensus        66 ~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~  142 (259)
T PRK14260         66 EGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRIS--AKLPQADLDEIVESALKGAALWQEVKD  142 (259)
T ss_pred             ceEEEECCEeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCcchhhh
Confidence            8999999998742      34568999999999887 89999998765432  11233344556788899998842    


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~  304 (691)
                      ..++     .++.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++
T Consensus       143 ~~~~-----~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~  215 (259)
T PRK14260        143 KLNK-----SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRV  215 (259)
T ss_pred             HhcC-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHh
Confidence            3333     3457999999999999999999999999999999999999999999999976 689999999975 68899


Q ss_pred             CCEEEEec-----CCeEEEecCHhHHH
Q 005545          305 FDKVVVLS-----EGSPIYSGRAAQVM  326 (691)
Q Consensus       305 ~D~v~~L~-----~G~iv~~G~~~~~~  326 (691)
                      ||++++|+     +|++++.|+++++.
T Consensus       216 ~d~i~~l~~~~~~~G~i~~~~~~~~~~  242 (259)
T PRK14260        216 SDFTAFFSTDESRIGQMVEFGVTTQIF  242 (259)
T ss_pred             cCeEEEEeccCCCCceEEEeCCHHHHh
Confidence            99999998     59999999999874

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=358.04  Aligned_cols=225  Identities=22%  Similarity=0.349  Sum_probs=188.0

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----  152 (691)
                      +..|+++|++++|...                   .+.+|+|+||+|++||++||+||||||||||+++|+|....    
T Consensus        78 ~~~i~~~nls~~y~~~-------------------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~  138 (329)
T PRK14257         78 ANVFEIRNFNFWYMNR-------------------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGT  138 (329)
T ss_pred             CceEEEEeeEEEecCC-------------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCC
Confidence            3479999999999621                   13589999999999999999999999999999999997642    


Q ss_pred             CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHHcCCCcc
Q 005545          153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLT-REEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~~~  225 (691)
                      +.+|+|.++|+++..      .+++.++||+|++.+++ .|++||+.|+....   ... ++...+.++++++.++|.+.
T Consensus       139 p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~  214 (329)
T PRK14257        139 SHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDE  214 (329)
T ss_pred             CCceEEEECCEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcch
Confidence            468999999999852      35678999999999885 79999999864321   122 22234457788899888654


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      .++.++ +....||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++.+ ++|||++||++. .+.++|
T Consensus       215 l~~~~~-~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~  291 (329)
T PRK14257        215 VKDDLD-KAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRIS  291 (329)
T ss_pred             hhhhhh-CCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhC
Confidence            444443 34567999999999999999999999999999999999999999999999976 699999999964 577889


Q ss_pred             CEEEEecCCeEEEecCHhHHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |||++|++|++++.|+++++..
T Consensus       292 Driivl~~G~i~e~g~~~~l~~  313 (329)
T PRK14257        292 DETVFFYQGWIEEAGETKTIFI  313 (329)
T ss_pred             CEEEEEECCEEEEeCCHHHHhc
Confidence            9999999999999999999853

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-40  Score=345.81  Aligned_cols=222  Identities=24%  Similarity=0.368  Sum_probs=182.9

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C---
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K---  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~---  153 (691)
                      ..|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|+... +   
T Consensus         5 ~~i~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~   63 (253)
T PRK14261          5 IILSTKNLNLWYGE---------------------KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR   63 (253)
T ss_pred             ceEEEeeeEEEECC---------------------eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCC
Confidence            36999999999861                     3589999999999999999999999999999999997532 2   


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++. ||+||+.+....+.  .....+.++.+.++++.+++.+...
T Consensus        64 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~  140 (253)
T PRK14261         64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVK  140 (253)
T ss_pred             cceEEEECCEEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhH
Confidence            48999999998742      235679999999998874 99999998754321  1123334456788889888853211


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.. +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|+
T Consensus       141 ~~~-~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~  217 (253)
T PRK14261        141 DRL-HDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDY  217 (253)
T ss_pred             HHh-hcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCE
Confidence            111 123457999999999999999999999999999999999999999999999976 589999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++|+++..|+++++.
T Consensus       218 v~~l~~G~i~~~g~~~~~~  236 (253)
T PRK14261        218 TGFMYLGKLIEFDKTTQIF  236 (253)
T ss_pred             EEEEECCEEEEcCCHHHHH
Confidence            9999999999999998874

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.4e-40  Score=345.06  Aligned_cols=220  Identities=23%  Similarity=0.362  Sum_probs=181.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC----
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~----  154 (691)
                      .|+++||+++|..                     +.+|+|+|++|++||+++|+||||||||||+++|+|+++ +.    
T Consensus         4 ~l~~~~l~~~~~~---------------------~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~-~~~~~~   61 (251)
T PRK14249          4 KIKIRGVNFFYHK---------------------HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND-IVSGAR   61 (251)
T ss_pred             eEEEEEEEEEECC---------------------eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC-ccccCC
Confidence            5889999999861                     348999999999999999999999999999999999774 43    


Q ss_pred             -ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          155 -SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       155 -~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                       +|+|.++|+++..      ..++.++|++|++.+++. ||+||+.+....+.  ...+++..++++++++.++|.+...
T Consensus        62 ~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~  138 (251)
T PRK14249         62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVK  138 (251)
T ss_pred             cccEEEECCEEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhh
Confidence             6999999988742      346789999999998875 99999988654321  1112233456777888888753211


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      ... +..+..|||||||||+|||+|+.+|++|+|||||+|||+.++..+.++|++++ +++|||++||++. .+.+.||+
T Consensus       139 ~~~-~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~  215 (251)
T PRK14249        139 DNL-HKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDW  215 (251)
T ss_pred             hHh-hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCE
Confidence            111 12345799999999999999999999999999999999999999999999995 5899999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~  326 (691)
                      +++|++|++++.|+++++.
T Consensus       216 i~~l~~G~i~~~~~~~~~~  234 (251)
T PRK14249        216 TGFLLTGDLVEYGRTGEIF  234 (251)
T ss_pred             EEEEeCCeEEEeCCHHHHH
Confidence            9999999999999988874

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-41  Score=372.71  Aligned_cols=217  Identities=29%  Similarity=0.480  Sum_probs=187.7

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .++.++.+||+|.|+.+                    +++++|+|+++++|+.+||+|+||||||||+++|+|+. ++.+
T Consensus       317 ~~~ei~~~~l~~~y~~g--------------------~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~-~~~~  375 (559)
T COG4988         317 PPIEISLENLSFRYPDG--------------------KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFL-APTQ  375 (559)
T ss_pred             CCceeeecceEEecCCC--------------------CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcC-CCCC
Confidence            46788889999999842                    25899999999999999999999999999999999987 4689


Q ss_pred             eEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC------Ccc
Q 005545          156 GKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL------TRC  225 (691)
Q Consensus       156 G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL------~~~  225 (691)
                      |+|.+||++..+    .++++++||+|++.+++. |++||+.++..     ..+++    .+.+++++.||      ++.
T Consensus       376 G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~G  445 (559)
T COG4988         376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDG  445 (559)
T ss_pred             ceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCc
Confidence            999999988753    689999999999999975 99999987632     23343    34455555555      346


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      .|+.+|+ ..++|||||+|||++||||+.+++++++||||++||.++.+.|.+.|.+++++ +|+|++||++.  ...-+
T Consensus       446 Ldt~ige-~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~--~~~~~  521 (559)
T COG4988         446 LDTVIGE-GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLE--DAADA  521 (559)
T ss_pred             ccchhcc-CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChH--HHhcC
Confidence            6788875 55789999999999999999999999999999999999999999999999985 99999999964  35789


Q ss_pred             CEEEEecCCeEEEecCHhHHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |+|++|++|++++.|.++++.+
T Consensus       522 D~I~vld~G~l~~~g~~~~L~~  543 (559)
T COG4988         522 DRIVVLDNGRLVEQGTHEELSE  543 (559)
T ss_pred             CEEEEecCCceeccCCHHHHhh
Confidence            9999999999999999999854

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=100.00  E-value=3.9e-41  Score=344.85  Aligned_cols=201  Identities=31%  Similarity=0.470  Sum_probs=172.4

Q ss_pred             eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 005545          116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYA  195 (691)
Q Consensus       116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~  195 (691)
                      |+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++... ....+|++|++.+++.+||+||+.+.
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~   78 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLA-QPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALA   78 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHH
Confidence            57999999999999999999999999999999987 47799999999987542 22358999999999999999999876


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005545          196 ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR  275 (691)
Q Consensus       196 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~  275 (691)
                      .....+ ...+.+..++++++++.+||.+..++.+     ++||||||||++|||+|+.+|++|||||||+|||+.++..
T Consensus        79 ~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~  152 (230)
T TIGR01184        79 VDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRP-----GQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGN  152 (230)
T ss_pred             HHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHH
Confidence            321111 2334455567889999999987777665     4699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          276 IVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       276 i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      +.+.|++++++ |+|||++||++. ++.++||++++|++|++++.|+..++
T Consensus       153 l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  202 (230)
T TIGR01184       153 LQEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV  202 (230)
T ss_pred             HHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence            99999999874 899999999964 57889999999999999988865544

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=100.00  E-value=2e-40  Score=343.84  Aligned_cols=222  Identities=27%  Similarity=0.347  Sum_probs=182.9

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCce
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGKFSG  156 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~-~~~~~G  156 (691)
                      ..|+++||++.|+.                     +.+|+|+||++++||++||+|+||||||||+++|+|+. .++.+|
T Consensus         6 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G   64 (252)
T CHL00131          6 PILEIKNLHASVNE---------------------NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG   64 (252)
T ss_pred             ceEEEEeEEEEeCC---------------------EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCc
Confidence            46999999999861                     34899999999999999999999999999999999963 246799


Q ss_pred             EEEECCEeCCh----hccc-cEEEEccCCCCCCCCCHHHHHHHHHhhcCC----CCCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545          157 KITYNGRQFSS----SLKR-KTGFVTQDDVLYPHLTVLETLSYAALLRLP----KKLTREEKIEQAEMVIMELGLT-RCR  226 (691)
Q Consensus       157 ~I~~~G~~~~~----~~~~-~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~  226 (691)
                      +|.++|.++..    ..++ .++|++|++.+++.+|+.|++.+.......    ......+..++++++++.+|+. ...
T Consensus        65 ~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  144 (252)
T CHL00131         65 DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFL  144 (252)
T ss_pred             eEEECCEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhh
Confidence            99999998753    1222 488999999999999999998875431100    0112223345678899999997 345


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc-C
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM-F  305 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~-~  305 (691)
                      ++.++    .+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +
T Consensus       145 ~~~~~----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~-~~~~~~~  219 (252)
T CHL00131        145 SRNVN----EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR-LLDYIKP  219 (252)
T ss_pred             ccccc----cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHhhhC
Confidence            55443    249999999999999999999999999999999999999999999999877999999999965 45555 8


Q ss_pred             CEEEEecCCeEEEecCHhHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~  325 (691)
                      |++++|++|++++.|+++.+
T Consensus       220 d~i~~l~~G~i~~~~~~~~~  239 (252)
T CHL00131        220 DYVHVMQNGKIIKTGDAELA  239 (252)
T ss_pred             CEEEEEeCCEEEEecChhhh
Confidence            99999999999999998844

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.8e-40  Score=349.13  Aligned_cols=218  Identities=24%  Similarity=0.399  Sum_probs=183.1

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---  152 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---  152 (691)
                      .+..|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||+++|+|++.+   
T Consensus        36 ~~~~l~i~~l~~~~~~---------------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~   94 (285)
T PRK14254         36 GETVIEARDLNVFYGD---------------------EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDA   94 (285)
T ss_pred             CCceEEEEEEEEEECC---------------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccC
Confidence            3457999999999851                     3589999999999999999999999999999999998642   


Q ss_pred             -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 005545          153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-  224 (691)
Q Consensus       153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-  224 (691)
                       +.+|+|.++|+++..      ..++.++|++|++.+++. ||+||+.+....+   .... +..++++++++.+||.+ 
T Consensus        95 ~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~  169 (285)
T PRK14254         95 ARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQ---GYDG-DIDERVEESLRRAALWDE  169 (285)
T ss_pred             CCCceEEEECCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHc---CCcH-HHHHHHHHHHHHcCCCch
Confidence             579999999988631      346789999999988875 9999998765432   1122 33456889999999853 


Q ss_pred             ---cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545          225 ---CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL  301 (691)
Q Consensus       225 ---~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i  301 (691)
                         ..+..     +..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ +|||++||++. .+
T Consensus       170 i~~~~~~~-----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i  242 (285)
T PRK14254        170 VKDQLDSS-----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QA  242 (285)
T ss_pred             hHHHHhCC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HH
Confidence               33443     3579999999999999999999999999999999999999999999999874 89999999964 57


Q ss_pred             HhcCCEEE-EecCCeEEEecCHhHHH
Q 005545          302 YRMFDKVV-VLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       302 ~~~~D~v~-~L~~G~iv~~G~~~~~~  326 (691)
                      .+++|+++ +|++|++++.|+++++.
T Consensus       243 ~~~~dri~v~l~~G~i~~~g~~~~~~  268 (285)
T PRK14254        243 ARISDKTAVFLTGGELVEFDDTDKIF  268 (285)
T ss_pred             HhhcCEEEEEeeCCEEEEeCCHHHHH
Confidence            78999975 67999999999988764

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-40  Score=348.65  Aligned_cols=219  Identities=21%  Similarity=0.367  Sum_probs=181.5

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--  152 (691)
                      +..|+++||++.|+.                     +.+|+|+|++|++||+++|+|+||||||||+++|+|++.  +  
T Consensus        22 ~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~   80 (271)
T PRK14238         22 KVVFDTQNLNLWYGE---------------------DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSV   80 (271)
T ss_pred             ceEEEEeeeEEEECC---------------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCC
Confidence            347999999999862                     248999999999999999999999999999999999764  2  


Q ss_pred             CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC---
Q 005545          153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---  223 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---  223 (691)
                      +++|+|.++|+++..      ..++.++|++|++.+++ .||+||+.++...+  ....+....+.+.+.++.+++.   
T Consensus        81 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l  157 (271)
T PRK14238         81 KTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDEL  157 (271)
T ss_pred             CCceeEEECCEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchH
Confidence            579999999998731      34668999999998887 59999998865322  1112223344567777777543   


Q ss_pred             -ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545          224 -RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY  302 (691)
Q Consensus       224 -~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~  302 (691)
                       +..+.     .++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+.
T Consensus       158 ~~~~~~-----~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~  230 (271)
T PRK14238        158 KDRLHD-----NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAA  230 (271)
T ss_pred             HHHHhc-----CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHH
Confidence             22333     3457999999999999999999999999999999999999999999999976 799999999964 577


Q ss_pred             hcCCEEEEecCCeEEEecCHhHHH
Q 005545          303 RMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       303 ~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++||++++|++|++++.|+++++.
T Consensus       231 ~~~d~i~~l~~G~i~~~g~~~~~~  254 (271)
T PRK14238        231 RISDKTAFFLNGYVNEYDDTDKIF  254 (271)
T ss_pred             HhCCEEEEEECCEEEEeCCHHHHH
Confidence            899999999999999999988773

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-40  Score=343.68  Aligned_cols=219  Identities=26%  Similarity=0.367  Sum_probs=181.5

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CC---
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GK---  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~---  153 (691)
                      ++|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+++|+|+.. .+   
T Consensus         4 ~~l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~   62 (252)
T PRK14255          4 KIITSSDVHLFYGK---------------------FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT   62 (252)
T ss_pred             ceEEEEeEEEEECC---------------------eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCC
Confidence            46899999999861                     358999999999999999999999999999999999753 13   


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---  224 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---  224 (691)
                      .+|+|.++|+++..      ..++.++|++|++.+++ .||+||+.+....+.  ....+...+++.+.++.+++..   
T Consensus        63 ~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i~  139 (252)
T PRK14255         63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAG--VKDKAVLDEAVETSLKQAAIWDEVK  139 (252)
T ss_pred             cccEEEEcCEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCccchh
Confidence            48999999998731      34568999999998887 699999987653321  1122223345677888887642   


Q ss_pred             -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                       ..+.     .++.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+
T Consensus       140 ~~~~~-----~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~  212 (252)
T PRK14255        140 DHLHE-----SALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASR  212 (252)
T ss_pred             hHHhc-----CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHH
Confidence             2333     3357999999999999999999999999999999999999999999999976 589999999964 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .+|++++|++|+++..|++.++..
T Consensus       213 ~~d~i~~l~~G~i~~~~~~~~~~~  236 (252)
T PRK14255        213 ISDKTAFFLTGNLIEFADTKQMFL  236 (252)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHhc
Confidence            999999999999999999888743

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-40  Score=345.67  Aligned_cols=223  Identities=22%  Similarity=0.392  Sum_probs=184.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC----C
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK----F  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~----~  154 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+|+||||||||+++|+|+.++.    .
T Consensus         7 ~l~~~nl~~~~~~---------------------~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~   65 (261)
T PRK14258          7 AIKVNNLSFYYDT---------------------QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRV   65 (261)
T ss_pred             eEEEeeEEEEeCC---------------------eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccc
Confidence            5899999999851                     24899999999999999999999999999999999987421    3


Q ss_pred             ceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          155 SGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       155 ~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      +|+|.++|+++..      ..++.++|++|++.+++ +|++||+.+.....  ...+..+..+++.++++.+++.+..+.
T Consensus        66 ~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~  142 (261)
T PRK14258         66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIV--GWRPKLEIDDIVESALKDADLWDEIKH  142 (261)
T ss_pred             cceEEECCEEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchhhh
Confidence            7999999988631      34667999999998888 89999998764322  111233444577889999998542211


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .. +..+..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ .++.++||+
T Consensus       143 ~~-~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~  220 (261)
T PRK14258        143 KI-HKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDF  220 (261)
T ss_pred             Hh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCE
Confidence            11 123457999999999999999999999999999999999999999999999975 589999999996 468899999


Q ss_pred             EEEecC-----CeEEEecCHhHHHH
Q 005545          308 VVVLSE-----GSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~-----G~iv~~G~~~~~~~  327 (691)
                      +++|++     |++++.|+++++.+
T Consensus       221 i~~l~~~~~~~G~i~~~~~~~~~~~  245 (261)
T PRK14258        221 TAFFKGNENRIGQLVEFGLTKKIFN  245 (261)
T ss_pred             EEEEccCCCcCceEEEeCCHHHHHh
Confidence            999999     99999999999844

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=7.6e-41  Score=380.60  Aligned_cols=213  Identities=25%  Similarity=0.439  Sum_probs=187.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||||+|+|++ ++.+|+|
T Consensus        11 ~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i   68 (510)
T PRK15439         11 LLCARSISKQYSG---------------------VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIV-PPDSGTL   68 (510)
T ss_pred             eEEEEeEEEEeCC---------------------ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence            6999999999861                     35999999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    . .++.+|||+|++.+++.+||+||+.+...    .   ..+..++++++++.+||.+..++.++  
T Consensus        69 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~----~---~~~~~~~~~~~l~~~~l~~~~~~~~~--  139 (510)
T PRK15439         69 EIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP----K---RQASMQKMKQLLAALGCQLDLDSSAG--  139 (510)
T ss_pred             EECCEECCCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc----c---chHHHHHHHHHHHHcCCCccccCChh--
Confidence            999998743    1 23469999999999999999999987531    1   12334678899999999887777664  


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                         .|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++
T Consensus       140 ---~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~  215 (510)
T PRK15439        140 ---SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRD  215 (510)
T ss_pred             ---hCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence               69999999999999999999999999999999999999999999999888999999999964 57789999999999


Q ss_pred             CeEEEecCHhHHH
Q 005545          314 GSPIYSGRAAQVM  326 (691)
Q Consensus       314 G~iv~~G~~~~~~  326 (691)
                      |++++.|+++++.
T Consensus       216 G~i~~~g~~~~~~  228 (510)
T PRK15439        216 GTIALSGKTADLS  228 (510)
T ss_pred             CEEEEecChHHcC
Confidence            9999999987653

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=1.4e-41  Score=320.40  Aligned_cols=212  Identities=33%  Similarity=0.495  Sum_probs=184.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+.++++..+....                 +...||++|++.|++||.+||+|||||||||||-+|+|+. .+++|+|
T Consensus         6 ii~~~~l~ktvg~~~-----------------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd-~~ssGeV   67 (228)
T COG4181           6 IIEVHHLSKTVGQGE-----------------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLD-DPSSGEV   67 (228)
T ss_pred             eeehhhhhhhhcCCC-----------------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCC-CCCCceE
Confidence            578888888876432                 2457999999999999999999999999999999999965 5789999


Q ss_pred             EECCEeCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545          159 TYNGRQFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       159 ~~~G~~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      .+.|+++.+       .+ .+.+|+|||...+.|+||..||+...+.++-   .+..+....+.+.|+.+||.+..+.+.
T Consensus        68 ~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~g---e~~~~~~~~A~~lL~~vGLg~Rl~HyP  144 (228)
T COG4181          68 RLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRG---ESSADSRAGAKALLEAVGLGKRLTHYP  144 (228)
T ss_pred             EEcCcchhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcC---CccccHHHHHHHHHHHhCcccccccCc
Confidence            999999853       23 3589999999999999999999998887752   233444567889999999998776554


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                           .+|||||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||.  +...|||.+
T Consensus       145 -----~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~  217 (228)
T COG4181         145 -----AQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQL  217 (228)
T ss_pred             -----cccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhhee
Confidence                 57999999999999999999999999999999999999999999999986 5999999999974  567899999


Q ss_pred             EecCCeEEE
Q 005545          310 VLSEGSPIY  318 (691)
Q Consensus       310 ~L~~G~iv~  318 (691)
                      -|..|+++.
T Consensus       218 r~~~G~l~~  226 (228)
T COG4181         218 RLRSGRLVE  226 (228)
T ss_pred             eeecceecc
Confidence            999999875

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=7.7e-41  Score=336.29  Aligned_cols=188  Identities=30%  Similarity=0.474  Sum_probs=163.7

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCC---h-----hccccEEEEccCCCCCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS---S-----SLKRKTGFVTQDDVLYP  184 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~---~-----~~~~~igyv~Q~~~l~~  184 (691)
                      +.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.++|+++.   .     ..++.++|++|++.+++
T Consensus        11 ~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~   89 (206)
T TIGR03608        11 KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE-KFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIE   89 (206)
T ss_pred             EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhhcc
Confidence            35999999999999999999999999999999999977 477999999999853   1     23568999999999999


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545          185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP  264 (691)
Q Consensus       185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP  264 (691)
                      .+|++||+.+.....   .....+..++++++++.+||.+..++.+     ++||||||||++|||+|+.+|++|+||||
T Consensus        90 ~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qr~~laral~~~p~llllDEP  161 (206)
T TIGR03608        90 NETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKI-----YELSGGEQQRVALARAILKDPPLILADEP  161 (206)
T ss_pred             CCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            999999999865432   2234445567889999999987777665     46999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      |+|||+.++..+.+.|++++++|+|||++||++. . .+.||++++|
T Consensus       162 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~-~~~~d~i~~l  206 (206)
T TIGR03608       162 TGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-V-AKQADRVIEL  206 (206)
T ss_pred             cCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-H-HhhcCEEEeC
Confidence            9999999999999999999877999999999974 3 4689999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=100.00  E-value=1.6e-41  Score=391.14  Aligned_cols=217  Identities=34%  Similarity=0.530  Sum_probs=186.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      -.|+|+||+|.|+.                    ++.+|+|+||++++||.+||+||||||||||+++|.|.+ .+.+|+
T Consensus       327 ~~I~f~~vsf~y~~--------------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~-~~~~G~  385 (567)
T COG1132         327 GSIEFENVSFSYPG--------------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLY-DPTSGE  385 (567)
T ss_pred             CeEEEEEEEEEcCC--------------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCe
Confidence            34999999999983                    246999999999999999999999999999999999976 467999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRNS  228 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~  228 (691)
                      |.+||+++..    .+|+.++||+||+.+|. -||+||+.++..     +.++++..+.+     .+.++.  +++..||
T Consensus       386 I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~~--lp~g~dt  457 (567)
T COG1132         386 ILIDGIDIRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIAN--LPDGYDT  457 (567)
T ss_pred             EEECCEehhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHh--Ccccccc
Confidence            9999999864    57899999999999997 799999998742     23444443333     333443  4667899


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .+|+ ....||||||||++||||++.+|++|+||||||+||+.+...+.+.++++. +++|+|+++|+++. + +.+|+|
T Consensus       458 ~vge-~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i-~~aD~I  533 (567)
T COG1132         458 IVGE-RGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-I-KNADRI  533 (567)
T ss_pred             eecC-CCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-H-HhCCEE
Confidence            9994 446799999999999999999999999999999999999999999999887 56899999999854 4 559999


Q ss_pred             EEecCCeEEEecCHhHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++|++++.|++++++.
T Consensus       534 iVl~~G~i~e~G~h~eLl~  552 (567)
T COG1132         534 IVLDNGRIVERGTHEELLA  552 (567)
T ss_pred             EEEECCEEEEecCHHHHHH
Confidence            9999999999999999976

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.4e-41  Score=369.30  Aligned_cols=213  Identities=35%  Similarity=0.551  Sum_probs=183.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+++|..+                    ++||+++||+|++||-+||+|+|||||||++|+|.+...  .+|+|
T Consensus       351 ~I~F~dV~f~y~~k--------------------~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I  408 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPK--------------------RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSI  408 (591)
T ss_pred             cEEEEeeEEEeCCC--------------------CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcE
Confidence            49999999999732                    359999999999999999999999999999999998763  69999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~  227 (691)
                      ++||+++.+    .+|+.|||||||..||. -||.+|+.|+..     ..+.++    |.++.++.|       +++...
T Consensus       409 ~IdG~dik~~~~~SlR~~Ig~VPQd~~LFn-dTIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~  478 (591)
T KOG0057|consen  409 LIDGQDIKEVSLESLRQSIGVVPQDSVLFN-DTILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQ  478 (591)
T ss_pred             EECCeeHhhhChHHhhhheeEeCCcccccc-hhHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccch
Confidence            999999864    57899999999999995 599999999753     233333    333334433       356778


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ....|||||||||+||||++.||+|+++|||||.||+.+..++++.+.+. ..|+|+|++.|+.+  ..+-||+
T Consensus       479 T~VGe-rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~-~~~rTvI~IvH~l~--ll~~~Dk  554 (591)
T KOG0057|consen  479 TLVGE-RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDV-MSGRTVIMIVHRLD--LLKDFDK  554 (591)
T ss_pred             hhHhh-cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHh-cCCCeEEEEEecch--hHhcCCE
Confidence            88986 33569999999999999999999999999999999999999999999994 35899999999953  5689999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++.+.|+++|++.
T Consensus       555 I~~l~nG~v~e~gth~ell~  574 (591)
T KOG0057|consen  555 IIVLDNGTVKEYGTHSELLA  574 (591)
T ss_pred             EEEEECCeeEEeccHHHHhh
Confidence            99999999999999999976

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=100.00  E-value=1.6e-40  Score=347.94  Aligned_cols=228  Identities=25%  Similarity=0.383  Sum_probs=187.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||++.|.....           .+ ...++.+|+|+||+|++||+++|+||||||||||+++|+|+. .+.+|+|
T Consensus         3 ~l~~~nl~~~~~~~~~-----------~~-~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~sG~i   69 (268)
T PRK10419          3 LLNVSGLSHHYAHGGL-----------SG-KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLE-SPSQGNV   69 (268)
T ss_pred             eEEEeceEEEecCCcc-----------cc-ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            5899999999962100           00 001246999999999999999999999999999999999976 4779999


Q ss_pred             EECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNS  228 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~  228 (691)
                      .++|+++..       ..++.++|++|++  .+++..|+.|++.+.....  ......+..++++++++.+|+. ...++
T Consensus        70 ~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~  147 (268)
T PRK10419         70 SWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDK  147 (268)
T ss_pred             EECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence            999998742       2456899999997  4677899999987653211  1223444556789999999996 45555


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .+     +.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.++||+
T Consensus       148 ~~-----~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~  221 (268)
T PRK10419        148 RP-----PQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQR  221 (268)
T ss_pred             CC-----ccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCE
Confidence            44     469999999999999999999999999999999999999999999999875 899999999964 57789999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++..
T Consensus       222 i~~l~~G~i~~~g~~~~~~~  241 (268)
T PRK10419        222 VMVMDNGQIVETQPVGDKLT  241 (268)
T ss_pred             EEEEECCEEeeeCChhhccC
Confidence            99999999999999988653

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=100.00  E-value=1.7e-40  Score=337.64  Aligned_cols=210  Identities=29%  Similarity=0.481  Sum_probs=180.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||++.|..+.                 +.+.+|+|+||++++||+++|+|+||||||||+++|+|.+ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~~~-----------------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~-~~~~G~i~   63 (220)
T TIGR02982         2 ISIRNLNHYYGHGS-----------------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLR-SVQEGSLK   63 (220)
T ss_pred             EEEEEEEEEccCCC-----------------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence            68999999885210                 1246999999999999999999999999999999999976 57899999


Q ss_pred             ECCEeCCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          160 YNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      ++|+++..       ..++.++|++|++.+++.+|+.||+.++....  .....++..++++++++.+||.+..++.+  
T Consensus        64 ~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--  139 (220)
T TIGR02982        64 VLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQ--PNLSYQEARERARAMLEAVGLGDHLDYYP--  139 (220)
T ss_pred             ECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCChhhhhcCh--
Confidence            99998742       24578999999999999999999999865422  11334555567899999999987777655  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                         +.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++.  +.++||++++|
T Consensus       140 ---~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l  214 (220)
T TIGR02982       140 ---HNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHM  214 (220)
T ss_pred             ---hhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEE
Confidence               57999999999999999999999999999999999999999999999986 5899999999974  45899999999


Q ss_pred             cCCeE
Q 005545          312 SEGSP  316 (691)
Q Consensus       312 ~~G~i  316 (691)
                      ++|++
T Consensus       215 ~~g~~  219 (220)
T TIGR02982       215 EDGKL  219 (220)
T ss_pred             ECCEE
Confidence            99986

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=100.00  E-value=1.4e-40  Score=332.06  Aligned_cols=191  Identities=53%  Similarity=0.847  Sum_probs=166.1

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCce
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSG  156 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G  156 (691)
                      +.|+++||+++|+...+               ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ ++.+|
T Consensus         2 ~~l~~~~ls~~~~~~~~---------------~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G   66 (194)
T cd03213           2 VTLSFRNLTVTVKSSPS---------------KSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG   66 (194)
T ss_pred             cEEEEEeeEEEEecCCC---------------cccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence            46899999999963100               012459999999999999999999999999999999999761 46799


Q ss_pred             EEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          157 KITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       157 ~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      +|.++|+++.. ..++.++|++|++.+++.+|++||+.+.....                                    
T Consensus        67 ~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~------------------------------------  110 (194)
T cd03213          67 EVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR------------------------------------  110 (194)
T ss_pred             EEEECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc------------------------------------
Confidence            99999998864 45678999999999999999999997642110                                    


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                       .||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|++..++.+.+|++++|++|+
T Consensus       111 -~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~  189 (194)
T cd03213         111 -GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGR  189 (194)
T ss_pred             -cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCE
Confidence             4899999999999999999999999999999999999999999999987799999999998656778999999999999


Q ss_pred             EEEec
Q 005545          316 PIYSG  320 (691)
Q Consensus       316 iv~~G  320 (691)
                      +++.|
T Consensus       190 i~~~~  194 (194)
T cd03213         190 VIYFG  194 (194)
T ss_pred             EEecC
Confidence            98764

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.8e-41  Score=397.19  Aligned_cols=212  Identities=32%  Similarity=0.480  Sum_probs=181.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|+|+..                   ++.+|+|+|++|++||.+||+|+||||||||+|+|+|++ .|.+|+|
T Consensus       451 ~I~~~nvsf~Y~~~-------------------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I  510 (686)
T TIGR03797       451 AIEVDRVTFRYRPD-------------------GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFE-TPESGSV  510 (686)
T ss_pred             eEEEEEEEEEcCCC-------------------CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence            59999999999631                   135899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||+++.+    .+|+.+|||+||+.+|+ -|++|||.++.    +  .+.+    ++.++++..|+       ++..|
T Consensus       511 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTI~eNi~~~~----~--~~~e----~i~~al~~a~l~~~i~~lp~G~d  579 (686)
T TIGR03797       511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMS-GSIFENIAGGA----P--LTLD----EAWEAARMAGLAEDIRAMPMGMH  579 (686)
T ss_pred             EECCEEcCcCCHHHHHhccEEEccCCccCc-ccHHHHHhcCC----C--CCHH----HHHHHHHHcCcHHHHHhcccccc
Confidence            999999863    57889999999999996 49999998752    1  2333    34445555554       45678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+. ...||||||||++|||||+++|++|+||||||+||+.+++++.+.|+++   ++|+|++||+++  ..+.+|+
T Consensus       580 t~ige~-G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~--~i~~~D~  653 (686)
T TIGR03797       580 TVISEG-GGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLS--TIRNADR  653 (686)
T ss_pred             ccccCC-CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChH--HHHcCCE
Confidence            888753 4679999999999999999999999999999999999999999999887   589999999974  3578999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus       654 Iivl~~G~iv~~G~~~~Ll~  673 (686)
T TIGR03797       654 IYVLDAGRVVQQGTYDELMA  673 (686)
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=100.00  E-value=2.4e-40  Score=343.53  Aligned_cols=218  Identities=29%  Similarity=0.420  Sum_probs=181.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||++.|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus         3 ~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i   60 (253)
T TIGR02323         3 LLQVSGLSKSYGG---------------------GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL-APDHGTA   60 (253)
T ss_pred             eEEEeeeEEEeCC---------------------ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            5899999999862                     24899999999999999999999999999999999976 4679999


Q ss_pred             EECCEe-----CCh---h-----ccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545          159 TYNGRQ-----FSS---S-----LKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       159 ~~~G~~-----~~~---~-----~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~  223 (691)
                      .++|++     +..   .     .++.++|++|++.  +++.+|+.||+.+.... .. .....+..++++++++.+|+.
T Consensus        61 ~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~-~~-~~~~~~~~~~~~~~l~~l~l~  138 (253)
T TIGR02323        61 TYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA-IG-ARHYGNIRAAAHDWLEEVEID  138 (253)
T ss_pred             EEecccccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHH-hc-ccchHHHHHHHHHHHHHcCCC
Confidence            999976     431   1     2357999999974  45678999998754321 11 111123346788999999996


Q ss_pred             c-cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545          224 R-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL  301 (691)
Q Consensus       224 ~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i  301 (691)
                      + ..++.+     +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+
T Consensus       139 ~~~~~~~~-----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~  212 (253)
T TIGR02323       139 PTRIDDLP-----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VA  212 (253)
T ss_pred             hhhhhcCc-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH
Confidence            3 555544     579999999999999999999999999999999999999999999998764 899999999964 57


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      .+.+|++++|++|++++.|+++++.
T Consensus       213 ~~~~d~~~~l~~G~i~~~~~~~~~~  237 (253)
T TIGR02323       213 RLLAQRLLVMQQGRVVESGLTDQVL  237 (253)
T ss_pred             HHhcCEEEEEECCEEEEECCHHHHh
Confidence            7899999999999999999988774

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-40  Score=342.55  Aligned_cols=223  Identities=22%  Similarity=0.375  Sum_probs=184.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--C--C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--G--K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~--~  153 (691)
                      +.|+++||++.|..                     +.+|+|+|++|++||+++|+||||||||||+++|+|+..  +  +
T Consensus         2 ~~l~~~~v~~~~~~---------------------~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~   60 (250)
T PRK14266          2 YRIEVENLNTYFDD---------------------AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR   60 (250)
T ss_pred             cEEEEEeEEEEeCC---------------------eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCC
Confidence            35889999998851                     358999999999999999999999999999999999753  2  3


Q ss_pred             CceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          154 FSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       154 ~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      ++|+|.++|+++..      ..++.++|++|++.+++. |+.||+.+.....  .....+...+++.++++.+||.+...
T Consensus        61 ~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~  137 (250)
T PRK14266         61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVK  137 (250)
T ss_pred             CccEEEECCEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHH
Confidence            79999999998742      346789999999998875 9999998764321  11223344567888999999854221


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      ... +...+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++...+|+
T Consensus       138 ~~~-~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~  214 (250)
T PRK14266        138 DKL-DKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKY  214 (250)
T ss_pred             HHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCE
Confidence            111 223467999999999999999999999999999999999999999999999965 789999999964 57899999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++..
T Consensus       215 i~~l~~G~i~~~g~~~~~~~  234 (250)
T PRK14266        215 TSFFLNGEIIESGLTDQIFI  234 (250)
T ss_pred             EEEEECCeEEEeCCHHHHHh
Confidence            99999999999999988743

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=100.00  E-value=1.3e-40  Score=340.81  Aligned_cols=203  Identities=26%  Similarity=0.380  Sum_probs=172.5

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---CCceEEEECCEeCCh-hc-cccEEEEccCCC--CCCCCC
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---KFSGKITYNGRQFSS-SL-KRKTGFVTQDDV--LYPHLT  187 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---~~~G~I~~~G~~~~~-~~-~~~igyv~Q~~~--l~~~lT  187 (691)
                      +|+|+|+++++||+++|+||||||||||+|+|+|+.++   +.+|+|.++|+++.. .. ++.++|++|++.  +++.+|
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t   80 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT   80 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence            57899999999999999999999999999999998743   179999999998754 22 357999999984  567789


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC---ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT---RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP  264 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP  264 (691)
                      ++|++.+.....   .....+..++++++++.++|.   +..++.+     +.|||||||||+|||+|+.+|++|+||||
T Consensus        81 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP  152 (230)
T TIGR02770        81 MGNHAIETLRSL---GKLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP  152 (230)
T ss_pred             HHHHHHHHHHHc---CccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            999997754322   112233456788999999997   3445444     56999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          265 TSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       265 tsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      |+|||+.++..+.+.|++++++ |+|||+++|++. ++.+++|++++|++|+++..|+++++.
T Consensus       153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~  214 (230)
T TIGR02770       153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF  214 (230)
T ss_pred             ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence            9999999999999999999874 899999999965 577899999999999999999988874

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=100.00  E-value=5.3e-41  Score=344.21  Aligned_cols=215  Identities=33%  Similarity=0.506  Sum_probs=175.1

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+..                   ++.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 i~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~p~~G~i~   60 (234)
T cd03251           1 VEFKNVTFRYPGD-------------------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFY-DVDSGRIL   60 (234)
T ss_pred             CEEEEEEEEeCCC-------------------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-cCCCCEEE
Confidence            4689999988621                   125899999999999999999999999999999999987 47799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHc--CCCccccc
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-----EQAEMVIMEL--GLTRCRNS  228 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~  228 (691)
                      ++|+++..    ..++.++|++|++.+++ .||+||+.+....     ....+..     ..+++.++.+  ++....+.
T Consensus        61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  134 (234)
T cd03251          61 IDGHDVRDYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGE  134 (234)
T ss_pred             ECCEEhhhCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeecc
Confidence            99988742    34668999999998886 6999999875321     1111111     1234555555  55544443


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .     +..||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. .+. .||++
T Consensus       135 ~-----~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~v  206 (234)
T cd03251         135 R-----GVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLS-TIE-NADRI  206 (234)
T ss_pred             C-----CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHh-hCCEE
Confidence            3     357999999999999999999999999999999999999999999999975 899999999975 454 49999


Q ss_pred             EEecCCeEEEecCHhHHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~~  328 (691)
                      ++|++|++++.|+.+++.+.
T Consensus       207 ~~l~~G~i~~~~~~~~~~~~  226 (234)
T cd03251         207 VVLEDGKIVERGTHEELLAQ  226 (234)
T ss_pred             EEecCCeEeeeCCHHHHHHc
Confidence            99999999999998887554

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=100.00  E-value=4.5e-41  Score=388.51  Aligned_cols=216  Identities=27%  Similarity=0.447  Sum_probs=184.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                   .+.+|+|+|++|++||.+||+|+||||||||+|+|+|++ +|.+|+|
T Consensus       341 ~i~~~~vsf~y~~~-------------------~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~-~p~~G~I  400 (582)
T PRK11176        341 DIEFRNVTFTYPGK-------------------EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFY-DIDEGEI  400 (582)
T ss_pred             eEEEEEEEEecCCC-------------------CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCceE
Confidence            59999999999732                   135999999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~  227 (691)
                      .+||+++.+    .+++.++||+||+.+|+ -|++|||.++.    +...+++    +++++++..|       |++..|
T Consensus       401 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gld  471 (582)
T PRK11176        401 LLDGHDLRDYTLASLRNQVALVSQNVHLFN-DTIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLD  471 (582)
T ss_pred             EECCEEhhhcCHHHHHhhceEEccCceeec-chHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccC
Confidence            999999864    56789999999999996 59999998752    2222333    3444444444       456678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+. .+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++  ..+.||+
T Consensus       472 t~ig~~-g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~  547 (582)
T PRK11176        472 TVIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADE  547 (582)
T ss_pred             ceeCCC-CCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCE
Confidence            999863 467999999999999999999999999999999999999999999999854 699999999974  4678999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++.+
T Consensus       548 Ii~l~~g~i~e~g~~~~l~~  567 (582)
T PRK11176        548 ILVVEDGEIVERGTHAELLA  567 (582)
T ss_pred             EEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999864

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.2e-41  Score=400.29  Aligned_cols=220  Identities=33%  Similarity=0.543  Sum_probs=187.2

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...|+|+||+|+|+...                  +..||+|+|+.|++|+.+||+|||||||||++++|.+.+ .|.+|
T Consensus       348 ~g~ief~nV~FsYPsRp------------------dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfy-dP~~G  408 (1228)
T KOG0055|consen  348 KGEIEFRNVCFSYPSRP------------------DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFY-DPTSG  408 (1228)
T ss_pred             ccceEEEEEEecCCCCC------------------cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCc
Confidence            35799999999998431                  356999999999999999999999999999999999866 57899


Q ss_pred             EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCcccc
Q 005545          157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRN  227 (691)
Q Consensus       157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~  227 (691)
                      +|++||.++..    .+|.+||.|.|+|.+| ..||+||+.|+..     +.++++..+..     .+.+.  .|++..+
T Consensus       409 ~V~idG~di~~~~~~~lr~~iglV~QePvlF-~~tI~eNI~~G~~-----dat~~~i~~a~k~ana~~fi~--~lp~g~~  480 (1228)
T KOG0055|consen  409 EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLF-ATTIRENIRYGKP-----DATREEIEEAAKAANAHDFIL--KLPDGYD  480 (1228)
T ss_pred             eEEEcCccchhcchHHHHhhcCeeeechhhh-cccHHHHHhcCCC-----cccHHHHHHHHHHccHHHHHH--hhHHhhc
Confidence            99999999864    5788999999999888 5799999998632     33344333322     22233  4578899


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+..+ +||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.+..+ |+|.|+++|+.+. + +.+|+
T Consensus       481 T~vge~g~-qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~-grTTivVaHRLSt-I-rnaD~  556 (1228)
T KOG0055|consen  481 TLVGERGV-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASK-GRTTIVVAHRLST-I-RNADK  556 (1228)
T ss_pred             ccccCCCC-CCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhc-CCeEEEEeeehhh-h-hccCE
Confidence            99997433 3999999999999999999999999999999999999999999988765 8999999999754 5 55999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++|+++
T Consensus       557 I~v~~~G~IvE~G~h~ELi~  576 (1228)
T KOG0055|consen  557 IAVMEEGKIVEQGTHDELIA  576 (1228)
T ss_pred             EEEEECCEEEEecCHHHHHh
Confidence            99999999999999999986

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-40  Score=342.97  Aligned_cols=223  Identities=21%  Similarity=0.358  Sum_probs=186.0

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---  152 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---  152 (691)
                      .|..+.++++++.|.                     ++.+|+|+||++++||+++|+|+||||||||+++|+|++.+   
T Consensus         5 ~~~~~~~~~~~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~   63 (261)
T PRK14263          5 APIVMDCKLDKIFYG---------------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKG   63 (261)
T ss_pred             CCceEEEEeEEEEeC---------------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccC
Confidence            466788999988875                     24599999999999999999999999999999999998743   


Q ss_pred             -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545          153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~  225 (691)
                       +.+|+|.++|+++..      ..++.++|++|++.++ .+|++||+.+....+.   . ..+..++++++++.++|.+.
T Consensus        64 ~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~  138 (261)
T PRK14263         64 FRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDE  138 (261)
T ss_pred             CCCceEEEECCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchh
Confidence             369999999998742      3456799999999888 5999999988754321   1 22334578889999998643


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      .+.... ...+.||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. ++.++|
T Consensus       139 i~~~~~-~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~  215 (261)
T PRK14263        139 VKDKLK-VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVA  215 (261)
T ss_pred             hhhhhh-CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhC
Confidence            322221 24467999999999999999999999999999999999999999999999964 789999999975 577899


Q ss_pred             CEEEEec--------CCeEEEecCHhHHHH
Q 005545          306 DKVVVLS--------EGSPIYSGRAAQVMD  327 (691)
Q Consensus       306 D~v~~L~--------~G~iv~~G~~~~~~~  327 (691)
                      |++++|+        +|++++.|+++++.+
T Consensus       216 d~v~~l~~~~~~~~~~G~i~~~g~~~~~~~  245 (261)
T PRK14263        216 DTTAFFSVDISQGTRTGYLVEMGPTAQIFQ  245 (261)
T ss_pred             CEEEEEecccccccCCceEEEeCCHHHHHh
Confidence            9999995        899999999988753

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.6e-40  Score=347.13  Aligned_cols=220  Identities=25%  Similarity=0.397  Sum_probs=181.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+.                    ++.+|+|+|++|++||+++|+||||||||||+|+|+|++ ++.+|+
T Consensus         5 ~~l~~~~l~~~~~~--------------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~   63 (272)
T PRK15056          5 AGIVVNDVTVTWRN--------------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFV-RLASGK   63 (272)
T ss_pred             ceEEEEeEEEEecC--------------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceE
Confidence            36999999999951                    135899999999999999999999999999999999977 477999


Q ss_pred             EEECCEeCChhcc-ccEEEEccCCCCC--CCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          158 ITYNGRQFSSSLK-RKTGFVTQDDVLY--PHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       158 I~~~G~~~~~~~~-~~igyv~Q~~~l~--~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      |.++|+++....+ +.++|++|++.+.  ...+++|++.++...... ......+..++++++++.+||.+..++.++  
T Consensus        64 i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~--  141 (272)
T PRK15056         64 ISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG--  141 (272)
T ss_pred             EEECCEEhHHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc--
Confidence            9999998754333 4699999997652  235788988653211000 011122334567889999999887777664  


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                         .||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||+++++ +
T Consensus       142 ---~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~  216 (272)
T PRK15056        142 ---ELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-K  216 (272)
T ss_pred             ---cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-C
Confidence               69999999999999999999999999999999999999999999999877999999999964 578899999877 8


Q ss_pred             CeEEEecCHhHH
Q 005545          314 GSPIYSGRAAQV  325 (691)
Q Consensus       314 G~iv~~G~~~~~  325 (691)
                      |++++.|+++++
T Consensus       217 G~i~~~g~~~~~  228 (272)
T PRK15056        217 GTVLASGPTETT  228 (272)
T ss_pred             CEEEeecCHHhc
Confidence            999999998876

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=100.00  E-value=6.6e-41  Score=344.47  Aligned_cols=216  Identities=31%  Similarity=0.495  Sum_probs=172.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|+++.|...                  .++.+|+|+||++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~i~~l~~~~~~~------------------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~   61 (238)
T cd03249           1 IEFKNVSFRYPSR------------------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFY-DPTSGEIL   61 (238)
T ss_pred             CeEEEEEEecCCC------------------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccC-CCCCCEEE
Confidence            4689999988621                  1135899999999999999999999999999999999977 47799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHc--CCCccccc
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE-----QAEMVIMEL--GLTRCRNS  228 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~  228 (691)
                      ++|.++..    ..++.++|++|++.+++ .||+||+.+....+     ..++..+     .+.+.++.+  ++....+.
T Consensus        62 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  135 (238)
T cd03249          62 LDGVDIRDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDA-----TDEEVEEAAKKANIHDFIMSLPDGYDTLVGE  135 (238)
T ss_pred             ECCEehhhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCC-----CHHHHHHHHHHcChHHHHHhhccccceeecc
Confidence            99988742    23567999999998886 69999998743211     1111111     112223333  33322332


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                           .++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++. ++ ..||++
T Consensus       136 -----~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~-~~-~~~d~v  207 (238)
T cd03249         136 -----RGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLS-TI-RNADLI  207 (238)
T ss_pred             -----CCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HH-hhCCEE
Confidence                 346799999999999999999999999999999999999999999999997 7899999999975 45 489999


Q ss_pred             EEecCCeEEEecCHhHHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~~  328 (691)
                      ++|++|++++.|+.+++.++
T Consensus       208 ~~l~~G~i~~~~~~~~~~~~  227 (238)
T cd03249         208 AVLQNGQVVEQGTHDELMAQ  227 (238)
T ss_pred             EEEECCEEEEeCCHHHHhhc
Confidence            99999999999998887654

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.9e-40  Score=376.60  Aligned_cols=218  Identities=23%  Similarity=0.420  Sum_probs=185.2

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCceEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-KFSGKI  158 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~~~G~I  158 (691)
                      |+++||+++|.                     .+.+|+|+||++++||+++|+||||||||||+|+|+|+.++ +.+|+|
T Consensus         2 l~i~~l~~~~~---------------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i   60 (500)
T TIGR02633         2 LEMKGIVKTFG---------------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEI   60 (500)
T ss_pred             EEEEeEEEEeC---------------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence            78999999985                     13589999999999999999999999999999999997743 369999


Q ss_pred             EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-ccccc
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-KLTREEKIEQAEMVIMELGLTRCR-NSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg  231 (691)
                      .++|+++..     ..++.++||+|++.+++.+||+||+.++....... ....++..++++++++.+||.+.. ++.+ 
T Consensus        61 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-  139 (500)
T TIGR02633        61 YWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-  139 (500)
T ss_pred             EECCEECCCCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-
Confidence            999998753     13467999999999999999999998764322111 123344456788999999997654 3444 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                          +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|
T Consensus       140 ----~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l  214 (500)
T TIGR02633       140 ----GDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVI  214 (500)
T ss_pred             ----hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEE
Confidence                469999999999999999999999999999999999999999999999888999999999964 578899999999


Q ss_pred             cCCeEEEecCHhH
Q 005545          312 SEGSPIYSGRAAQ  324 (691)
Q Consensus       312 ~~G~iv~~G~~~~  324 (691)
                      ++|++++.|++++
T Consensus       215 ~~G~i~~~~~~~~  227 (500)
T TIGR02633       215 RDGQHVATKDMST  227 (500)
T ss_pred             eCCeEeeecCccc
Confidence            9999999987654

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=100.00  E-value=4.1e-40  Score=340.52  Aligned_cols=228  Identities=30%  Similarity=0.388  Sum_probs=182.4

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKI  158 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I  158 (691)
                      |+++||++.|+.                     +.+|+|+|++|++||+++|+||||||||||+++|+|+.. ++.+|+|
T Consensus         2 i~~~nl~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i   60 (248)
T PRK09580          2 LSIKDLHVSVED---------------------KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV   60 (248)
T ss_pred             eEEEEEEEEeCC---------------------eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEE
Confidence            789999999861                     358999999999999999999999999999999999752 4779999


Q ss_pred             EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHh-hcC--CC-CCCHHHHHHHHHHHHHHcCCC-ccccc
Q 005545          159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAAL-LRL--PK-KLTREEKIEQAEMVIMELGLT-RCRNS  228 (691)
Q Consensus       159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~-~~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~  228 (691)
                      .++|+++..    . .++.++|++|++.+++.+|+.+++.+... .+.  .. .....+..+++++.++.+++. +..++
T Consensus        61 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  140 (248)
T PRK09580         61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTR  140 (248)
T ss_pred             EECCCccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhccc
Confidence            999987642    1 23569999999998888888777654321 110  00 011223345678899999995 34444


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc-CCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM-FDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~-~D~  307 (691)
                      .+.    +.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+... +|+
T Consensus       141 ~~~----~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~  215 (248)
T PRK09580        141 SVN----VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDY  215 (248)
T ss_pred             CCC----CCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCE
Confidence            332    369999999999999999999999999999999999999999999999877899999999965 45555 899


Q ss_pred             EEEecCCeEEEecCHhHHHHHhhhcCC
Q 005545          308 VVVLSEGSPIYSGRAAQVMDYFGSIGY  334 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~~f~~~g~  334 (691)
                      +++|++|++++.|+++.+ ..+...++
T Consensus       216 i~~l~~g~i~~~g~~~~~-~~~~~~~~  241 (248)
T PRK09580        216 VHVLYQGRIVKSGDFTLV-KQLEEQGY  241 (248)
T ss_pred             EEEEECCeEEEeCCHHHH-HHHHhcCC
Confidence            999999999999998865 34444444

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.5e-40  Score=382.98  Aligned_cols=230  Identities=27%  Similarity=0.394  Sum_probs=191.4

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.|....+  .+        ....+.+.+|+||||+|++||+++|+|+||||||||+|+|+|++ ++.+|+
T Consensus       312 ~~L~~~~l~~~y~~~~~--~~--------~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~-~p~~G~  380 (623)
T PRK10261        312 PILQVRNLVTRFPLRSG--LL--------NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLV-ESQGGE  380 (623)
T ss_pred             ceEEEeeeEEEEcCCCc--cc--------cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCcE
Confidence            46999999999963110  00        00001246999999999999999999999999999999999987 467999


Q ss_pred             EEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545          158 ITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN  227 (691)
Q Consensus       158 I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~  227 (691)
                      |.++|+++..       ..++.++||+|++  .+++.+||.|++.+....+  ....+++..++++++++.+||. +..+
T Consensus       381 I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~  458 (623)
T PRK10261        381 IIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAW  458 (623)
T ss_pred             EEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhh
Confidence            9999998742       2356899999997  5889999999998764332  1112344556789999999996 4566


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     .+|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||+. .+.++||
T Consensus       459 ~~~-----~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~d  532 (623)
T PRK10261        459 RYP-----HEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISH  532 (623)
T ss_pred             CCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCC
Confidence            655     479999999999999999999999999999999999999999999999875 899999999964 6789999


Q ss_pred             EEEEecCCeEEEecCHhHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +|++|++|++++.|+++++.
T Consensus       533 ri~vl~~G~iv~~g~~~~i~  552 (623)
T PRK10261        533 RVAVMYLGQIVEIGPRRAVF  552 (623)
T ss_pred             EEEEEECCEEEEecCHHHHh
Confidence            99999999999999999885

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=1.6e-40  Score=384.73  Aligned_cols=213  Identities=25%  Similarity=0.396  Sum_probs=184.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++|+|+.                    ++.+|+|+|+++++||.+||+|+||||||||+|+|+|++ +|.+|+|
T Consensus       340 ~i~~~~v~f~y~~--------------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~-~p~~G~I  398 (592)
T PRK10790        340 RIDIDNVSFAYRD--------------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYY-PLTEGEI  398 (592)
T ss_pred             eEEEEEEEEEeCC--------------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCceE
Confidence            5899999999962                    124899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||.++.+    .+++.++||+||+.+|+. |++|||.++.      ..++    ++++++++.+|+       ++..|
T Consensus       399 ~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gld  467 (592)
T PRK10790        399 RLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLY  467 (592)
T ss_pred             EECCEEhhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhcccccc
Confidence            999999864    578899999999999975 9999998752      1222    245556666664       45568


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ....||||||||++|||||+.+|+||+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++  ..+.||+
T Consensus       468 t~i~e-~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~  543 (592)
T PRK10790        468 TPLGE-QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADT  543 (592)
T ss_pred             ccccC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCE
Confidence            88876 3466999999999999999999999999999999999999999999999875 699999999974  4578999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus       544 ii~l~~G~i~~~G~~~~L~~  563 (592)
T PRK10790        544 ILVLHRGQAVEQGTHQQLLA  563 (592)
T ss_pred             EEEEECCEEEEEcCHHHHHh
Confidence            99999999999999999864

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=100.00  E-value=1.1e-40  Score=340.86  Aligned_cols=215  Identities=33%  Similarity=0.492  Sum_probs=172.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++++|+.                    .+.+|+|+||++++||+++|+|||||||||||++|+|++ ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~--------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i   60 (229)
T cd03254           2 EIEFENVNFSYDE--------------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFY-DPQKGQI   60 (229)
T ss_pred             eEEEEEEEEecCC--------------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEE
Confidence            4789999998851                    124899999999999999999999999999999999987 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc------
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS------  228 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~------  228 (691)
                      .++|.++..    ..++.++|++|++.+++. ||+||+.+...     ....    +++++.++.+++.+..+.      
T Consensus        61 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~-----~~~~----~~~~~~~~~~~l~~~~~~~~~~~~  130 (229)
T cd03254          61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRP-----NATD----EEVIEAAKEAGAHDFIMKLPNGYD  130 (229)
T ss_pred             EECCEeHHHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCC-----CCCH----HHHHHHHHHhChHHHHHhCccccc
Confidence            999988742    346679999999988875 99999976421     1111    123333444444322211      


Q ss_pred             -cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          229 -VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 -~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                       ..+ ..++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++ +|+|||++||++. .+ ..||+
T Consensus       131 ~~~~-~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~  206 (229)
T cd03254         131 TVLG-ENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLS-TI-KNADK  206 (229)
T ss_pred             CHhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHH-HH-hhCCE
Confidence             111 2346799999999999999999999999999999999999999999999996 4899999999975 45 46999


Q ss_pred             EEEecCCeEEEecCHhHHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~~  328 (691)
                      +++|++|++++.|+.+++...
T Consensus       207 i~~l~~g~~~~~~~~~~~~~~  227 (229)
T cd03254         207 ILVLDDGKIIEEGTHDELLAK  227 (229)
T ss_pred             EEEEeCCeEEEeCCHHHHHhh
Confidence            999999999999988777543

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.3e-40  Score=374.76  Aligned_cols=215  Identities=24%  Similarity=0.382  Sum_probs=185.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|
T Consensus         4 ~l~~~~l~~~~~~---------------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~I   61 (501)
T PRK11288          4 YLSFDGIGKTFPG---------------------VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNY-QPDAGSI   61 (501)
T ss_pred             eEEEeeeEEEECC---------------------EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCCEE
Confidence            6899999999851                     35999999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..     ..++.++||+|++.+++.+||+||+.++...+........+..++++++++.+||.+..++.+   
T Consensus        62 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---  138 (501)
T PRK11288         62 LIDGQEMRFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPL---  138 (501)
T ss_pred             EECCEECCCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCch---
Confidence            999998742     245689999999999999999999988532111111233445567889999999987666655   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        ..|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|++
T Consensus       139 --~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~  215 (501)
T PRK11288        139 --KYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKD  215 (501)
T ss_pred             --hhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC
Confidence              469999999999999999999999999999999999999999999999888999999999964 57789999999999


Q ss_pred             CeEEEecC
Q 005545          314 GSPIYSGR  321 (691)
Q Consensus       314 G~iv~~G~  321 (691)
                      |+++..++
T Consensus       216 G~i~~~~~  223 (501)
T PRK11288        216 GRYVATFD  223 (501)
T ss_pred             CEEEeecC
Confidence            99987665

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7e-40  Score=344.25  Aligned_cols=218  Identities=23%  Similarity=0.345  Sum_probs=181.6

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC---
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG---  152 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~---  152 (691)
                      .+..|+++||+++|..                     +.+|+|+|++|++||+++|+||||||||||+++|+|+..+   
T Consensus        17 ~~~~l~~~nl~~~~~~---------------------~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~   75 (274)
T PRK14265         17 DHSVFEVEGVKVFYGG---------------------FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPG   75 (274)
T ss_pred             CCceEEEeeEEEEeCC---------------------eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccC
Confidence            3457999999999861                     3589999999999999999999999999999999997642   


Q ss_pred             -CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC--
Q 005545          153 -KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT--  223 (691)
Q Consensus       153 -~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~--  223 (691)
                       +.+|+|.++|+++..      ..++.++|++|++.+++. ||.||+.+....+   ... ....+.+++.++.+++.  
T Consensus        76 ~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~  150 (274)
T PRK14265         76 AKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEE  150 (274)
T ss_pred             CCcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchh
Confidence             258999999988731      346789999999988874 9999998764322   111 12234566778888874  


Q ss_pred             --ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545          224 --RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL  301 (691)
Q Consensus       224 --~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i  301 (691)
                        +..++     .+..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||+++|++. .+
T Consensus       151 l~~~~~~-----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~  223 (274)
T PRK14265        151 VKDKLKE-----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QA  223 (274)
T ss_pred             hHHHhcC-----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HH
Confidence              22333     3457999999999999999999999999999999999999999999999975 689999999964 57


Q ss_pred             HhcCCEEEEec---------CCeEEEecCHhHHH
Q 005545          302 YRMFDKVVVLS---------EGSPIYSGRAAQVM  326 (691)
Q Consensus       302 ~~~~D~v~~L~---------~G~iv~~G~~~~~~  326 (691)
                      .++||++++|+         +|++++.|+++++.
T Consensus       224 ~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~  257 (274)
T PRK14265        224 SRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF  257 (274)
T ss_pred             HHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence            89999999997         79999999999884

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.7e-40  Score=343.75  Aligned_cols=221  Identities=23%  Similarity=0.375  Sum_probs=181.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----C
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----K  153 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~  153 (691)
                      ..|+++||+++|..                     +.+|+|+|++|++||+++|+|+||||||||+|+|+|+..+    +
T Consensus         9 ~~l~i~~v~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~   67 (264)
T PRK14243          9 TVLRTENLNVYYGS---------------------FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFR   67 (264)
T ss_pred             eEEEEeeeEEEECC---------------------EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCC
Confidence            36999999999851                     3589999999999999999999999999999999997532    3


Q ss_pred             CceEEEECCEeCC------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 005545          154 FSGKITYNGRQFS------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN  227 (691)
Q Consensus       154 ~~G~I~~~G~~~~------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~  227 (691)
                      ++|+|.++|+++.      ...++.++|++|++.+++ .||.||+.+....+   ... .+..++++++++.+++.+..+
T Consensus        68 ~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~  142 (264)
T PRK14243         68 VEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVK  142 (264)
T ss_pred             CceEEEECCEEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHH
Confidence            6899999998873      134668999999998887 59999998765322   111 223345677788888743211


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      ... +..++.||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++. .+.++||+
T Consensus       143 ~~~-~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~  219 (264)
T PRK14243        143 DKL-KQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDM  219 (264)
T ss_pred             HHh-cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCE
Confidence            111 123457999999999999999999999999999999999999999999999976 589999999964 68899999


Q ss_pred             EEEec---------CCeEEEecCHhHHHH
Q 005545          308 VVVLS---------EGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~---------~G~iv~~G~~~~~~~  327 (691)
                      +++|+         +|++++.|+++++.+
T Consensus       220 v~~l~~~~~~~~~~~g~i~~~~~~~~~~~  248 (264)
T PRK14243        220 TAFFNVELTEGGGRYGYLVEFDRTEKIFN  248 (264)
T ss_pred             EEEEecccccccccCceEEEeCCHHHHHh
Confidence            99998         799999999988853

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.7e-40  Score=374.54  Aligned_cols=206  Identities=22%  Similarity=0.366  Sum_probs=177.4

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLT  187 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lT  187 (691)
                      +.+|+|+||++++||+++|+||||||||||+|+|+|++ ++.+|+|.++|+++..     ..++.++||+|++.+++.+|
T Consensus        11 ~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t   89 (491)
T PRK10982         11 VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIY-QKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVLQRS   89 (491)
T ss_pred             EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCceEEEECCEECCCCCHHHHHhCCEEEEecccccccCCC
Confidence            45999999999999999999999999999999999977 4679999999998742     23567999999998999999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg  267 (691)
                      |+||+.++...........++..++++++++.+|+.+..++.+     ..|||||||||+|||+|+.+|++|||||||+|
T Consensus        90 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~  164 (491)
T PRK10982         90 VMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKV-----ATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSS  164 (491)
T ss_pred             HHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCch-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence            9999987532110101133444567889999999987777665     46999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      ||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+++++
T Consensus       165 LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~  221 (491)
T PRK10982        165 LTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL  221 (491)
T ss_pred             CCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence            9999999999999999888999999999964 57789999999999999999987664

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=100.00  E-value=6.9e-41  Score=395.39  Aligned_cols=213  Identities=27%  Similarity=0.430  Sum_probs=181.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                   .+.+|+|+|++|++||.+||+||||||||||+|+|+|++ .|.+|+|
T Consensus       477 ~I~~~~vsf~y~~~-------------------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~-~p~~G~I  536 (710)
T TIGR03796       477 YVELRNITFGYSPL-------------------EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY-QPWSGEI  536 (710)
T ss_pred             eEEEEEEEEecCCC-------------------CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence            69999999999732                   235899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||.++.+    .+|+.+|||+|++.+|+ .|++|||.++.    + ..+.++    +.++++..|+       ++..|
T Consensus       537 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~-gTi~eNi~l~~----~-~~~~~~----i~~al~~~~l~~~i~~lp~gl~  606 (710)
T TIGR03796       537 LFDGIPREEIPREVLANSVAMVDQDIFLFE-GTVRDNLTLWD----P-TIPDAD----LVRACKDAAIHDVITSRPGGYD  606 (710)
T ss_pred             EECCEeHHHCCHHHHHhheeEEecCChhhh-ccHHHHhhCCC----C-CCCHHH----HHHHHHHhCCHHHHHhCcCccc
Confidence            999999853    57899999999999996 59999998642    1 223333    3344444443       45678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ....||||||||++|||||+++|++|+||||||+||+.++..+.+.|++   .++|+|++||+++.  .+.||+
T Consensus       607 t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~--i~~~D~  680 (710)
T TIGR03796       607 AELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST--IRDCDE  680 (710)
T ss_pred             ceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH--HHhCCE
Confidence            88875 3467999999999999999999999999999999999999999999986   47999999999753  567999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus       681 Iivl~~G~i~~~G~~~~Ll~  700 (710)
T TIGR03796       681 IIVLERGKVVQRGTHEELWA  700 (710)
T ss_pred             EEEEeCCEEEEecCHHHHHH
Confidence            99999999999999999875

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=100.00  E-value=3.3e-40  Score=336.85  Aligned_cols=211  Identities=25%  Similarity=0.395  Sum_probs=175.5

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +..|+++||+++|..                     +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|
T Consensus         5 ~~~i~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G   62 (225)
T PRK10247          5 SPLLQLQNVGYLAGD---------------------AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI-SPTSG   62 (225)
T ss_pred             CceEEEeccEEeeCC---------------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCC
Confidence            346999999998851                     35899999999999999999999999999999999976 57799


Q ss_pred             EEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 005545          157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVG  231 (691)
Q Consensus       157 ~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg  231 (691)
                      +|.++|.++..    ..++.++|++|++.+++ .||+||+.+....+.   ...  ..++++++++.+||. ...++.+ 
T Consensus        63 ~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~-  135 (225)
T PRK10247         63 TLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-DTVYDNLIFPWQIRN---QQP--DPAIFLDDLERFALPDTILTKNI-  135 (225)
T ss_pred             eEEECCEEcCcCCHHHHHhccEEEeccccccc-ccHHHHHHhHHhhcC---CCh--HHHHHHHHHHHcCCChHHhcCCc-
Confidence            99999988742    24568999999998887 599999987543321   111  234577899999996 3455554 


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                          +.|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++. .+ +.||++++
T Consensus       136 ----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~-~~-~~~d~i~~  209 (225)
T PRK10247        136 ----AELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKD-EI-NHADKVIT  209 (225)
T ss_pred             ----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChH-HH-HhCCEEEE
Confidence                57999999999999999999999999999999999999999999999986 4899999999975 45 56999999


Q ss_pred             ec-CCeEEEecCH
Q 005545          311 LS-EGSPIYSGRA  322 (691)
Q Consensus       311 L~-~G~iv~~G~~  322 (691)
                      |+ ++..+.+|..
T Consensus       210 l~~~~~~~~~~~~  222 (225)
T PRK10247        210 LQPHAGEMQEARY  222 (225)
T ss_pred             EecccchHhhhhh
Confidence            95 4656666654

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=4e-40  Score=410.84  Aligned_cols=228  Identities=27%  Similarity=0.433  Sum_probs=201.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      .-.|+++||+++|+.+                   .+.+|+|+|+.|++||++||+||||||||||+|+|+|.+ .+++|
T Consensus      1935 ~~~L~v~nLsK~Y~~~-------------------~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll-~ptsG 1994 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGT-------------------SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDT-TVTSG 1994 (2272)
T ss_pred             CceEEEEEEEEEECCC-------------------CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCC-CCCcc
Confidence            3469999999999621                   246999999999999999999999999999999999987 47799


Q ss_pred             EEEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          157 KITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       157 ~I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      +|.++|+++..   ..++.+||++|++.+++.+||+|+|.+.+.++   +.++++.+++++++++.+||.+.+|++++  
T Consensus      1995 ~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-- 2069 (2272)
T TIGR01257      1995 DATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-- 2069 (2272)
T ss_pred             EEEECCEECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh--
Confidence            99999998853   34678999999999999999999999876554   23445556678899999999988888775  


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                         .|||||||||+||+||+.+|+||||||||+|||+.+++.++++|++++++|+|||++||++ +++.++|||+++|++
T Consensus      2070 ---~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~m-ee~e~lcDrV~IL~~ 2145 (2272)
T TIGR01257      2070 ---TYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM-EECEALCTRLAIMVK 2145 (2272)
T ss_pred             ---hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEEC
Confidence               6999999999999999999999999999999999999999999999988899999999996 568899999999999


Q ss_pred             CeEEEecCHhHHHHHhhhcCC
Q 005545          314 GSPIYSGRAAQVMDYFGSIGY  334 (691)
Q Consensus       314 G~iv~~G~~~~~~~~f~~~g~  334 (691)
                      |+++..|+++++.+.|.. ||
T Consensus      2146 G~i~~~Gs~q~Lk~~~g~-g~ 2165 (2272)
T TIGR01257      2146 GAFQCLGTIQHLKSKFGD-GY 2165 (2272)
T ss_pred             CEEEEECCHHHHHHHhCC-ce
Confidence            999999999999888763 44

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=100.00  E-value=1.7e-40  Score=382.92  Aligned_cols=216  Identities=32%  Similarity=0.529  Sum_probs=185.5

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+|+||+|+|+..                   ++.+|+|+|+++++||.+||+||||||||||+|+|+|.. ++.+|+
T Consensus       337 ~~i~~~~v~f~y~~~-------------------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~p~~G~  396 (574)
T PRK11160        337 VSLTLNNVSFTYPDQ-------------------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAW-DPQQGE  396 (574)
T ss_pred             CeEEEEEEEEECCCC-------------------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCce
Confidence            469999999999631                   135899999999999999999999999999999999977 577999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC------cccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT------RCRN  227 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~------~~~~  227 (691)
                      |++||+++.+    .+|+.++||+||+.+|+ .|++||+.++.    + ..++    +.+.++++..++.      +..|
T Consensus       397 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~Gld  466 (574)
T PRK11160        397 ILLNGQPIADYSEAALRQAISVVSQRVHLFS-ATLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLN  466 (574)
T ss_pred             EEECCEEhhhCCHHHHHhheeEEcccchhhc-ccHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccC
Confidence            9999998864    56889999999999996 59999998753    1 1222    3456677777764      3467


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ..+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|+++|+++.  .+.+|+
T Consensus       467 T~vge-~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~-~~tviiitHr~~~--~~~~d~  542 (574)
T PRK11160        467 AWLGE-GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQ-NKTVLMITHRLTG--LEQFDR  542 (574)
T ss_pred             chhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecChhH--HHhCCE
Confidence            88875 3567999999999999999999999999999999999999999999999864 7999999999754  467999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++++
T Consensus       543 i~~l~~G~i~~~g~~~~l~~  562 (574)
T PRK11160        543 ICVMDNGQIIEQGTHQELLA  562 (574)
T ss_pred             EEEEeCCeEEEeCCHHHHHh
Confidence            99999999999999999864

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=5.3e-40  Score=374.69  Aligned_cols=220  Identities=28%  Similarity=0.434  Sum_probs=186.2

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCceEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKI  158 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G~I  158 (691)
                      |+++||+++|.                     ++.+|+|+||++++||+++|+||||||||||||+|+|++. ++.+|+|
T Consensus         1 l~~~~l~~~~~---------------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i   59 (520)
T TIGR03269         1 IEVKNLTKKFD---------------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI   59 (520)
T ss_pred             CEEEEEEEEEC---------------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEE
Confidence            47899999885                     1359999999999999999999999999999999999752 4779999


Q ss_pred             EEC-----------------------CEeC----------C----hhccccEEEEccC-CCCCCCCCHHHHHHHHHhhcC
Q 005545          159 TYN-----------------------GRQF----------S----SSLKRKTGFVTQD-DVLYPHLTVLETLSYAALLRL  200 (691)
Q Consensus       159 ~~~-----------------------G~~~----------~----~~~~~~igyv~Q~-~~l~~~lTV~E~l~~~~~~~~  200 (691)
                      .++                       |.++          .    ...++.++||+|+ +.+++.+||+||+.+..... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-  138 (520)
T TIGR03269        60 IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-  138 (520)
T ss_pred             EEeccccccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-
Confidence            997                       2221          0    0235679999997 67888899999998865422 


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 005545          201 PKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL  280 (691)
Q Consensus       201 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L  280 (691)
                        ..+.++..++++++++.+||++..++.+     +.|||||||||+|||||+.+|++|||||||+|||+.++..++++|
T Consensus       139 --~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l  211 (520)
T TIGR03269       139 --GYEGKEAVGRAVDLIEMVQLSHRITHIA-----RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNAL  211 (520)
T ss_pred             --CCCHHHHHHHHHHHHHHcCChhhhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHH
Confidence              2334455678899999999987777655     469999999999999999999999999999999999999999999


Q ss_pred             HHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHh
Q 005545          281 RGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF  329 (691)
Q Consensus       281 ~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f  329 (691)
                      +++++ .|+|||++|||+. .+.++||++++|++|++++.|+++++...+
T Consensus       212 ~~l~~~~g~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~  260 (520)
T TIGR03269       212 EEAVKASGISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF  260 (520)
T ss_pred             HHHHHhcCcEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence            99976 4899999999964 577899999999999999999998886654

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=100.00  E-value=5e-40  Score=381.74  Aligned_cols=223  Identities=25%  Similarity=0.384  Sum_probs=188.5

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|....                 +...+|+|+||++++||++||+||||||||||+|+|+|++ ++.+|+
T Consensus        11 ~~l~v~~l~~~y~~~~-----------------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll-~p~~G~   72 (623)
T PRK10261         11 DVLAVENLNIAFMQEQ-----------------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLL-EQAGGL   72 (623)
T ss_pred             ceEEEeceEEEecCCC-----------------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCeE
Confidence            3699999999996321                 1236999999999999999999999999999999999987 467999


Q ss_pred             EEECCEeCC-------------h----hcc-ccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 005545          158 ITYNGRQFS-------------S----SLK-RKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI  217 (691)
Q Consensus       158 I~~~G~~~~-------------~----~~~-~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l  217 (691)
                      |.++|..+.             .    ..+ +.+|||+|++  .+++.+||.||+.++....  ...+..+.++++.+++
T Consensus        73 i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~--~~~~~~~~~~~~~~~l  150 (623)
T PRK10261         73 VQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLH--QGASREEAMVEAKRML  150 (623)
T ss_pred             EEECCEEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHH
Confidence            999986431             1    122 4799999998  6888999999999876432  1234555667889999


Q ss_pred             HHcCCCc---cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEE
Q 005545          218 MELGLTR---CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITT  293 (691)
Q Consensus       218 ~~lgL~~---~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~  293 (691)
                      +.+||.+   ..+..+     .+|||||||||+||+||+.+|++|||||||+|||+.++.++.++|++++++ |+|||++
T Consensus       151 ~~~gL~~~~~~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~i  225 (623)
T PRK10261        151 DQVRIPEAQTILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFI  225 (623)
T ss_pred             HHCCCCChhhHHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence            9999963   345544     579999999999999999999999999999999999999999999999865 8999999


Q ss_pred             eCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       294 ~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      |||+ ..+.++||||++|++|++++.|+++++.
T Consensus       226 tHdl-~~~~~~adri~vl~~G~i~~~g~~~~~~  257 (623)
T PRK10261        226 THDM-GVVAEIADRVLVMYQGEAVETGSVEQIF  257 (623)
T ss_pred             cCCH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence            9996 4577999999999999999999988874

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.2e-39  Score=339.31  Aligned_cols=219  Identities=26%  Similarity=0.455  Sum_probs=182.2

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++|++++|.                     .+.+|+|+||++++||+++|+||||||||||+++|+|+.. +.+|+
T Consensus         9 ~~i~~~~~~~~~~---------------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~-~~~G~   66 (257)
T PRK14246          9 DVFNISRLYLYIN---------------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE-IYDSK   66 (257)
T ss_pred             hheeeeeEEEecC---------------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-CCcCc
Confidence            3599999999985                     2358999999999999999999999999999999999764 55655


Q ss_pred             EEECC------EeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 005545          158 ITYNG------RQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR---  224 (691)
Q Consensus       158 I~~~G------~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~---  224 (691)
                      |.++|      +++..    ..++.++|++|++.+++.+||+||+.+.....  ....+++..++++++++.+++.+   
T Consensus        67 v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~  144 (257)
T PRK14246         67 IKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSH--GIKEKREIKKIVEECLRKVGLWKEVY  144 (257)
T ss_pred             eeEcCEEEECCcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCCccch
Confidence            55554      55421    34678999999999999999999998864321  11123445567889999999963   


Q ss_pred             -cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          225 -CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       225 -~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                       ..+.     .++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+
T Consensus       145 ~~~~~-----~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~  217 (257)
T PRK14246        145 DRLNS-----PASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVAR  217 (257)
T ss_pred             hhhcC-----CcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHH
Confidence             2333     3357999999999999999999999999999999999999999999999975 699999999964 5778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .||++++|++|+++..|+.+++.+
T Consensus       218 ~~d~v~~l~~g~i~~~g~~~~~~~  241 (257)
T PRK14246        218 VADYVAFLYNGELVEWGSSNEIFT  241 (257)
T ss_pred             hCCEEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999988753

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=100.00  E-value=3e-40  Score=335.46  Aligned_cols=209  Identities=33%  Similarity=0.537  Sum_probs=172.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++++|...                   .+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i   61 (220)
T cd03245           2 RIEFRNVSFSYPNQ-------------------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLY-KPTSGSV   61 (220)
T ss_pred             eEEEEEEEEEcCCC-------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCeE
Confidence            37899999988521                   135899999999999999999999999999999999976 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc---
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG---  231 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg---  231 (691)
                      .++|+++..    ..++.++|++|++.+++ .||.||+.+...     ...    .+.+.++++.+++.+..+..+.   
T Consensus        62 ~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~  131 (220)
T cd03245          62 LLDGTDIRQLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLD  131 (220)
T ss_pred             EECCEEhHHCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhcccccc
Confidence            999998742    24568999999998886 699999876421     111    2245677888888765554321   


Q ss_pred             ---CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          232 ---GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       232 ---~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                         ......||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .+ ++||++
T Consensus       132 ~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v  208 (220)
T cd03245         132 LQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRI  208 (220)
T ss_pred             ceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEE
Confidence               1124579999999999999999999999999999999999999999999999775 89999999975 44 799999


Q ss_pred             EEecCCeEEEec
Q 005545          309 VVLSEGSPIYSG  320 (691)
Q Consensus       309 ~~L~~G~iv~~G  320 (691)
                      ++|++|++++.|
T Consensus       209 ~~l~~g~i~~~~  220 (220)
T cd03245         209 IVMDSGRIVADG  220 (220)
T ss_pred             EEEeCCeEeecC
Confidence            999999998764

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=100.00  E-value=1.5e-40  Score=391.55  Aligned_cols=216  Identities=30%  Similarity=0.518  Sum_probs=184.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|+|+..                   .+.+|+|+|++|++||.+||+|+||||||||+|+|+|++ .|.+|+|
T Consensus       463 ~I~~~~vsf~Y~~~-------------------~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~-~p~~G~I  522 (694)
T TIGR03375       463 EIEFRNVSFAYPGQ-------------------ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY-QPTEGSV  522 (694)
T ss_pred             eEEEEEEEEEeCCC-------------------CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceE
Confidence            59999999999631                   235899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~  227 (691)
                      .+||.++.+    .+|+.++||+|++.+|+ .|++|||.++.    + ..+.++    +.++++..+       |++..|
T Consensus       523 ~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~-~TI~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl~  592 (694)
T TIGR03375       523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFY-GTLRDNIALGA----P-YADDEE----ILRAAELAGVTEFVRRHPDGLD  592 (694)
T ss_pred             EECCEEhhhCCHHHHHhccEEECCChhhhh-hhHHHHHhCCC----C-CCCHHH----HHHHHHHcChHHHHHhCccccc
Confidence            999999864    57889999999999997 59999998752    1 233333    333444443       355678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ....||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++  ..+.||+
T Consensus       593 T~i~e-~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~  668 (694)
T TIGR03375       593 MQIGE-RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDR  668 (694)
T ss_pred             ceecC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCE
Confidence            88886 3467999999999999999999999999999999999999999999999875 799999999975  3578999


Q ss_pred             EEEecCCeEEEecCHhHHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~~  328 (691)
                      |++|++|++++.|+++++++.
T Consensus       669 iivl~~G~i~e~G~~~eLl~~  689 (694)
T TIGR03375       669 IIVMDNGRIVADGPKDQVLEA  689 (694)
T ss_pred             EEEEeCCEEEeeCCHHHHHHH
Confidence            999999999999999998764

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=100.00  E-value=7.4e-40  Score=334.18  Aligned_cols=223  Identities=28%  Similarity=0.337  Sum_probs=176.4

Q ss_pred             EEEEeEEEEEccCCCCCc-ccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           80 LKFEDVAYSINLHTSKGS-CFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~-~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      |+.+|+++.|+...+... ..+.......++++.+.+|+|+||+|++||+++|+||||||||||+++|+|.. ++.+|+|
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~p~~G~i   79 (224)
T cd03220           1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIY-PPDSGTV   79 (224)
T ss_pred             CceeecceeccccccCcchhhhhhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence            356788888874321100 00000011234566778999999999999999999999999999999999976 4779999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI  238 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L  238 (691)
                      .++|+++..        ..+...+.+.+||+||+.+.....   .....+..++++++++.++|.+..++.+     ++|
T Consensus        80 ~~~g~~~~~--------~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~L  143 (224)
T cd03220          80 TVRGRVSSL--------LGLGGGFNPELTGRENIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPV-----KTY  143 (224)
T ss_pred             EECCEEchh--------hcccccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhC
Confidence            999987531        111234556799999998765432   1233444567888999999988777766     469


Q ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEE
Q 005545          239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIY  318 (691)
Q Consensus       239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~  318 (691)
                      |||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++|++|++++
T Consensus       144 SgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~  222 (224)
T cd03220         144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRF  222 (224)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence            999999999999999999999999999999999999999999999877899999999964 5778999999999999987


Q ss_pred             ec
Q 005545          319 SG  320 (691)
Q Consensus       319 ~G  320 (691)
                      .|
T Consensus       223 ~g  224 (224)
T cd03220         223 DG  224 (224)
T ss_pred             cC
Confidence            65

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.6e-39  Score=346.63  Aligned_cols=225  Identities=25%  Similarity=0.396  Sum_probs=183.4

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----  152 (691)
                      +..|+++||+++|..                     +.+|+|+||+|++||+++|+|+|||||||||++|+|++.+    
T Consensus        43 ~~~l~i~nl~~~~~~---------------------~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~  101 (305)
T PRK14264         43 DAKLSVEDLDVYYGD---------------------DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAA  101 (305)
T ss_pred             CceEEEEEEEEEeCC---------------------eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCC
Confidence            347999999999862                     3589999999999999999999999999999999997642    


Q ss_pred             CCceEEEECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC--C-------CCC-HHHHHHHHHHH
Q 005545          153 KFSGKITYNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP--K-------KLT-REEKIEQAEMV  216 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~--~-------~~~-~~~~~~~v~~~  216 (691)
                      +.+|+|.++|+++..      ..++.++|++|++.+++ .||+||+.++...+..  .       ... .....++++++
T Consensus       102 p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (305)
T PRK14264        102 RIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERS  180 (305)
T ss_pred             CCceEEEECCEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHH
Confidence            579999999988742      24568999999998887 5999999986432100  0       011 12334568889


Q ss_pred             HHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005545          217 IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ  296 (691)
Q Consensus       217 l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~  296 (691)
                      ++.+++.+...... +..++.|||||||||+||+||+.+|+||||||||+|||+.++..+.+.|+++++ ++|||++||+
T Consensus       181 l~~~~l~~~~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~-~~tiiivtH~  258 (305)
T PRK14264        181 LRQAALWDEVNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE-EYTVVVVTHN  258 (305)
T ss_pred             HHHcCCchhhhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence            99998853222222 223467999999999999999999999999999999999999999999999987 4899999999


Q ss_pred             CchHHHhcCCEE-EEecCCeEEEecCHhHHH
Q 005545          297 PSSRLYRMFDKV-VVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       297 p~~~i~~~~D~v-~~L~~G~iv~~G~~~~~~  326 (691)
                      +. .+.++||++ ++|++|++++.|+++++.
T Consensus       259 ~~-~i~~~~d~i~~~l~~G~i~~~g~~~~~~  288 (305)
T PRK14264        259 MQ-QAARISDQTAVFLTGGELVEYDDTDKIF  288 (305)
T ss_pred             HH-HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence            64 577899997 578999999999988774

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=8e-40  Score=331.52  Aligned_cols=204  Identities=27%  Similarity=0.364  Sum_probs=175.9

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .+..|+++|++++++.                     +.+|+|+||++++||+++|+||||||||||+++|+|+. ++.+
T Consensus         8 ~~~~l~~~~l~~~~~~---------------------~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~   65 (214)
T PRK13543          8 APPLLAAHALAFSRNE---------------------EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLL-HVES   65 (214)
T ss_pred             CcceEEEeeEEEecCC---------------------ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCC
Confidence            3457999999998851                     35899999999999999999999999999999999976 4679


Q ss_pred             eEEEECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          156 GKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       156 G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      |+|.++|+++.. ..++.++|++|++.+++.+|++||+.+....+   ...   ..+.++++++.++|.+..++.+    
T Consensus        66 G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~---~~~~~~~~l~~~~l~~~~~~~~----  135 (214)
T PRK13543         66 GQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GRR---AKQMPGSALAIVGLAGYEDTLV----  135 (214)
T ss_pred             eeEEECCEEccchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CCc---HHHHHHHHHHHcCChhhccCCh----
Confidence            999999998753 23457999999999999999999998765332   111   2345678899999987777765    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                       +.||||||||++|||+++.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++.+++|++++++.
T Consensus       136 -~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~  212 (214)
T PRK13543        136 -RQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA  212 (214)
T ss_pred             -hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence             469999999999999999999999999999999999999999999999888999999999964 68899999999863

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=8.3e-40  Score=328.92  Aligned_cols=198  Identities=26%  Similarity=0.369  Sum_probs=170.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||++++..                     +.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~---------------------~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~p~~G~v~   59 (204)
T PRK13538          2 LEARNLACERDE---------------------RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA-RPDAGEVL   59 (204)
T ss_pred             eEEEEEEEEECC---------------------EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence            788999998851                     35899999999999999999999999999999999977 47799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++.+||.||+.+....+   ..   +..++++++++.+||.+..++.+     +
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~-----~  128 (204)
T PRK13538         60 WQGEPIRRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPV-----R  128 (204)
T ss_pred             ECCEEcccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCCh-----h
Confidence            99998742   35678999999999999999999998765432   11   22356788999999987777655     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      .||||||||++||++|+.+|++++|||||+|||+.++..+.++|++++++|+|||++||++. .+....+|++.+
T Consensus       129 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~  202 (204)
T PRK13538        129 QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL  202 (204)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence            69999999999999999999999999999999999999999999999877899999999975 465666677766

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=100.00  E-value=3.6e-40  Score=338.47  Aligned_cols=213  Identities=35%  Similarity=0.523  Sum_probs=170.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                    .+.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 l~~~~l~~~~~~--------------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~v~   59 (236)
T cd03253           1 IEFENVTFAYDP--------------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFY-DVSSGSIL   59 (236)
T ss_pred             CEEEEEEEEeCC--------------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEEE
Confidence            468999998851                    134899999999999999999999999999999999976 57799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccc
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------RNS  228 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~  228 (691)
                      ++|+++..    ..++.++|++|++.+++ .||+||+.+...     .....+    +.+.++..++.+.       .++
T Consensus        60 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~  129 (236)
T cd03253          60 IDGQDIREVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDT  129 (236)
T ss_pred             ECCEEhhhCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccc
Confidence            99988743    34567999999998885 699999987532     111211    2222333333211       122


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      ... ..++.|||||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+ ..||++
T Consensus       130 ~~~-~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~-~~~d~~  205 (236)
T cd03253         130 IVG-ERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLS-TI-VNADKI  205 (236)
T ss_pred             hhh-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HH-HhCCEE
Confidence            221 12467999999999999999999999999999999999999999999999987 999999999975 45 459999


Q ss_pred             EEecCCeEEEecCHhHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++|++++.|+.+++.+
T Consensus       206 ~~l~~g~i~~~~~~~~~~~  224 (236)
T cd03253         206 IVLKDGRIVERGTHEELLA  224 (236)
T ss_pred             EEEECCEEEeeCCHHHHhh
Confidence            9999999999998877654

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.3e-40  Score=316.42  Aligned_cols=215  Identities=32%  Similarity=0.490  Sum_probs=189.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      ++..++++.+|+..                   .+.+|+|+|++|.+||.++++||||||||||||+++|.. .|..|+|
T Consensus         3 ~l~~~~~sl~y~g~-------------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~-~P~~G~i   62 (259)
T COG4525           3 MLNVSHLSLSYEGK-------------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV-TPSRGSI   62 (259)
T ss_pred             eeehhheEEecCCc-------------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc-CcccceE
Confidence            35567777777621                   145899999999999999999999999999999999987 5779999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCccc
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI  238 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L  238 (691)
                      .+||++++.. -..-|.|+|++.++|.+||.||+.|+..++   .+.+.++.+++.+.+..+||++..++.+     -+|
T Consensus        63 ~l~~r~i~gP-gaergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qL  133 (259)
T COG4525          63 QLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQL  133 (259)
T ss_pred             EECCEeccCC-CccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----Eee
Confidence            9999998642 223589999999999999999999998876   6788999999999999999998777665     479


Q ss_pred             CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC--Ce
Q 005545          239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE--GS  315 (691)
Q Consensus       239 SGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~--G~  315 (691)
                      ||||||||.|||||+.+|++|+||||+++||.-+++++.++|-++++ .|+.++++||+.. ++.-+++++++|+-  ||
T Consensus       134 SGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ie-EAlflatrLvvlsp~pgR  212 (259)
T COG4525         134 SGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIE-EALFLATRLVVLSPGPGR  212 (259)
T ss_pred             cchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHhhhheeEEecCCCce
Confidence            99999999999999999999999999999999999999999999986 5999999999975 45669999999985  89


Q ss_pred             EEEecCHh
Q 005545          316 PIYSGRAA  323 (691)
Q Consensus       316 iv~~G~~~  323 (691)
                      ++..-+++
T Consensus       213 vv~~~~~d  220 (259)
T COG4525         213 VVERLPLD  220 (259)
T ss_pred             eeEecCCC
Confidence            99877766

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=100.00  E-value=7.1e-40  Score=343.73  Aligned_cols=214  Identities=25%  Similarity=0.349  Sum_probs=178.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+..                   ...+|+|+||+|++||+++|+|+||||||||+++|+|++.  .+|+|
T Consensus         2 ~i~~~nls~~~~~~-------------------~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I   60 (275)
T cd03289           2 QMTVKDLTAKYTEG-------------------GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN--TEGDI   60 (275)
T ss_pred             eEEEEEEEEEeCCC-------------------CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEE
Confidence            47899999999631                   1348999999999999999999999999999999999874  58999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC--
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG--  232 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~--  232 (691)
                      +++|.++..    .+++.++||+|++.+++. ||+||+....      ....    +++.+.++.+||.+..+..++.  
T Consensus        61 ~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~  129 (275)
T cd03289          61 QIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLD  129 (275)
T ss_pred             EECCEEhhhCCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCccccc
Confidence            999998743    457789999999999974 9999996321      1122    2456677888886554443321  


Q ss_pred             ----CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          233 ----PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       233 ----~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                          +..+.||||||||++|||||+.+|+||+|||||++||+.+...+.+.|+++. +++|||+++|++. .+. .||||
T Consensus       130 ~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri  206 (275)
T cd03289         130 FVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRF  206 (275)
T ss_pred             ceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEE
Confidence                1335699999999999999999999999999999999999999999999875 4899999999974 454 59999


Q ss_pred             EEecCCeEEEecCHhHHHH
Q 005545          309 VVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++|++|++++.|++++++.
T Consensus       207 ~vl~~G~i~~~g~~~~l~~  225 (275)
T cd03289         207 LVIEENKVRQYDSIQKLLN  225 (275)
T ss_pred             EEecCCeEeecCCHHHHhh
Confidence            9999999999999999865

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.3e-39  Score=338.67  Aligned_cols=222  Identities=23%  Similarity=0.366  Sum_probs=181.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-C--
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-K--  153 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~--  153 (691)
                      +..|+++||+++|+.                     +.+|+|+|++|++||+++|+|+||||||||+++|+|+..+ +  
T Consensus        14 ~~~l~~~~l~~~~~~---------------------~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~   72 (265)
T PRK14252         14 QQKSEVNKLNFYYGG---------------------YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGN   72 (265)
T ss_pred             CceEEEEEEEEEECC---------------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCC
Confidence            456999999999861                     3599999999999999999999999999999999997642 2  


Q ss_pred             -CceEEEECCEeCC--------hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCC-HHHHHHHHHHHHHHcCCC
Q 005545          154 -FSGKITYNGRQFS--------SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLT-REEKIEQAEMVIMELGLT  223 (691)
Q Consensus       154 -~~G~I~~~G~~~~--------~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~-~~~~~~~v~~~l~~lgL~  223 (691)
                       .+|+|.++|+++.        ...++.++|++|++.+++. ||+||+.+.....   ... .....++++++++.+++.
T Consensus        73 ~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~  148 (265)
T PRK14252         73 HYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALW  148 (265)
T ss_pred             CcccEEEEcCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCc
Confidence             6999999997653        1346689999999998885 9999998764322   111 222345677888888874


Q ss_pred             ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                      +...... +.....||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+
T Consensus       149 ~~l~~~~-~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~-~~~~~  225 (265)
T PRK14252        149 DEVKDRL-GDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNM-QQAAR  225 (265)
T ss_pred             hhhhHHH-hCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCH-HHHHH
Confidence            2111111 123357999999999999999999999999999999999999999999999976 68999999996 45778


Q ss_pred             cCCEEEEecCCeEEEecCHhHHH
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +||++++|++|++++.|+.+++.
T Consensus       226 ~~d~i~~l~~G~i~~~g~~~~~~  248 (265)
T PRK14252        226 VSDYTAYMYMGELIEFGATDTIF  248 (265)
T ss_pred             hCCEEEEEECCEEEEeCCHHHHH
Confidence            99999999999999999988774

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=100.00  E-value=1.5e-40  Score=392.38  Aligned_cols=214  Identities=28%  Similarity=0.442  Sum_probs=181.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+.                    ++.+|+|+|++|++||.+||+||||||||||+|+|+|++ .|.+|+|
T Consensus       473 ~I~~~~vsf~y~~--------------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~-~p~~G~I  531 (708)
T TIGR01193       473 DIVINDVSYSYGY--------------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFF-QARSGEI  531 (708)
T ss_pred             cEEEEEEEEEcCC--------------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccC-CCCCcEE
Confidence            5999999999962                    135899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~  227 (691)
                      ++||.++.+    .+|+.+|||+|++.+|+. |++|||.++..   + ..+.++    +.++++..+       +++..|
T Consensus       532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~~----i~~a~~~a~l~~~i~~lp~gld  602 (708)
T TIGR01193       532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQDE----IWAACEIAEIKDDIENMPLGYQ  602 (708)
T ss_pred             EECCEEHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHHH----HHHHHHHhCCHHHHHhcccccC
Confidence            999998853    578899999999999965 99999987521   1 223332    333344333       345678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ....||||||||++|||||+++|++|+||||||+||+.+++.+.+.|+++  +|+|+|+++|+++  ..+.+|+
T Consensus       603 t~i~e-~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~  677 (708)
T TIGR01193       603 TELSE-EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDK  677 (708)
T ss_pred             cEecC-CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCE
Confidence            88875 34679999999999999999999999999999999999999999999986  4799999999975  3578999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus       678 i~~l~~G~i~~~G~~~~L~~  697 (708)
T TIGR01193       678 IIVLDHGKIIEQGSHDELLD  697 (708)
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999999875

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.2e-40  Score=374.30  Aligned_cols=224  Identities=23%  Similarity=0.397  Sum_probs=186.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+..                  +++.+|+|+||+|++||+++|+||||||||||+|+|+|+++++.+|+
T Consensus       258 ~~l~~~~l~~~~~~~------------------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~  319 (506)
T PRK13549        258 VILEVRNLTAWDPVN------------------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGE  319 (506)
T ss_pred             ceEEEecCccccccc------------------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcE
Confidence            368999999887411                  12358999999999999999999999999999999999874347999


Q ss_pred             EEECCEeCCh-----hccccEEEEccCC---CCCCCCCHHHHHHHHHhhcCCC--CCCHHHHHHHHHHHHHHcCCC-ccc
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHLTVLETLSYAALLRLPK--KLTREEKIEQAEMVIMELGLT-RCR  226 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~lTV~E~l~~~~~~~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~  226 (691)
                      |.++|+++..     ..++.++|++|++   .+++.+||.||+.+........  ....++..++++++++.++|. +..
T Consensus       320 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  399 (506)
T PRK13549        320 IFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASP  399 (506)
T ss_pred             EEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCc
Confidence            9999988742     2355799999995   4788899999998753211111  012334456788999999996 466


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.++     .|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. ++.++||
T Consensus       400 ~~~~~-----~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d  473 (506)
T PRK13549        400 ELAIA-----RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSD  473 (506)
T ss_pred             ccccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCC
Confidence            76664     69999999999999999999999999999999999999999999999988999999999964 6789999


Q ss_pred             EEEEecCCeEEEecCHhHH
Q 005545          307 KVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~  325 (691)
                      ++++|++|+++..|+++++
T Consensus       474 ~v~~l~~G~i~~~~~~~~~  492 (506)
T PRK13549        474 RVLVMHEGKLKGDLINHNL  492 (506)
T ss_pred             EEEEEECCEEEEEeccccC
Confidence            9999999999999877654

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-40  Score=309.75  Aligned_cols=216  Identities=31%  Similarity=0.497  Sum_probs=189.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|+++.|.                     ..++|.|++++.+.||.+.++||||+|||||+|.|.= +.-|.+|+.
T Consensus         2 sirv~~in~~yg---------------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnl-le~p~sg~l   59 (242)
T COG4161           2 SIQLNGINCFYG---------------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNL-LEMPRSGTL   59 (242)
T ss_pred             ceEEcccccccc---------------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHH-HhCCCCCeE
Confidence            467777777775                     3468999999999999999999999999999999984 555779999


Q ss_pred             EECCEeCC-------h---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 005545          159 TYNGRQFS-------S---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       159 ~~~G~~~~-------~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~  228 (691)
                      .+.|...+       +   .+|+.+|+|+|+..++|++||.|||.-+. .+. .++++++.+.++.++|+++.|.+.+|+
T Consensus        60 ~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr  137 (242)
T COG4161          60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADR  137 (242)
T ss_pred             EecccccccccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhcccccccc
Confidence            99886542       1   46889999999999999999999986543 222 256788888899999999999999887


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      ..     -.|||||+|||+|||||+.+|++|++||||++|||.-..++++++++|+..|.|-+++||.. ....+.+.+|
T Consensus       138 ~p-----lhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev-~va~k~as~v  211 (242)
T COG4161         138 YP-----LHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEV-EVARKTASRV  211 (242)
T ss_pred             Cc-----eecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeeh-hHHHhhhhhe
Confidence            55     36999999999999999999999999999999999999999999999999999999999995 4678999999


Q ss_pred             EEecCCeEEEecCHhH
Q 005545          309 VVLSEGSPIYSGRAAQ  324 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~  324 (691)
                      +.|.+|+|++.|+.+-
T Consensus       212 vyme~g~ive~g~a~~  227 (242)
T COG4161         212 VYMENGHIVEQGDASC  227 (242)
T ss_pred             EeeecCeeEeecchhh
Confidence            9999999999998753

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=1.3e-39  Score=372.10  Aligned_cols=224  Identities=27%  Similarity=0.420  Sum_probs=187.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----CC
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----KF  154 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----~~  154 (691)
                      +|+++||+++|+...                 ..+.+|+|+||++++||++||+||||||||||+|+|+|.+++    ++
T Consensus         5 ~l~~~~l~~~~~~~~-----------------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~   67 (529)
T PRK15134          5 LLAIENLSVAFRQQQ-----------------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYP   67 (529)
T ss_pred             eEEEeceEEEecCCC-----------------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCcc
Confidence            689999999996210                 124699999999999999999999999999999999998753    26


Q ss_pred             ceEEEECCEeCCh-------hcc-ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545          155 SGKITYNGRQFSS-------SLK-RKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR  224 (691)
Q Consensus       155 ~G~I~~~G~~~~~-------~~~-~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~  224 (691)
                      +|+|.++|+++..       ..+ +.+|||+|++.  +++.+||.|++.+.....  ...+..+..++++++++.+||.+
T Consensus        68 ~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~  145 (529)
T PRK15134         68 SGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLH--RGMRREAARGEILNCLDRVGIRQ  145 (529)
T ss_pred             ceEEEECCEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCC
Confidence            9999999998742       122 47999999974  677789999987643221  12344556678899999999975


Q ss_pred             c---ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchH
Q 005545          225 C---RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSR  300 (691)
Q Consensus       225 ~---~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~  300 (691)
                      .   .++++     .+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++ |+|||++||++. .
T Consensus       146 ~~~~~~~~~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~  219 (529)
T PRK15134        146 AAKRLTDYP-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-I  219 (529)
T ss_pred             hHHHHhhCC-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-H
Confidence            2   35554     579999999999999999999999999999999999999999999999875 899999999964 5


Q ss_pred             HHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          301 LYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       301 i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +.++||+|++|++|++++.|+++++..
T Consensus       220 ~~~~~dri~~l~~G~i~~~g~~~~~~~  246 (529)
T PRK15134        220 VRKLADRVAVMQNGRCVEQNRAATLFS  246 (529)
T ss_pred             HHHhcCEEEEEECCEEEEeCCHHHHhh
Confidence            778999999999999999999887743

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=100.00  E-value=9.2e-40  Score=338.49  Aligned_cols=200  Identities=31%  Similarity=0.462  Sum_probs=173.8

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHH
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLE  190 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E  190 (691)
                      +|+|+||++++||+++|+||||||||||+++|+|+. ++ +|+|.++|+++..    ..++.++|++|++.+++.+||+|
T Consensus        11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~-~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~   88 (248)
T PRK03695         11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-PG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQ   88 (248)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CC-CeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHH
Confidence            799999999999999999999999999999999976 34 8999999998743    23457999999988888899999


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh-------CCCEEEEeC
Q 005545          191 TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV-------NPSCLLLDE  263 (691)
Q Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~-------~P~iLlLDE  263 (691)
                      |+.+....    ....++..++++++++.+||.+..++.+     +.||||||||++||++|+.       +|++|||||
T Consensus        89 nl~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDE  159 (248)
T PRK03695         89 YLTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDE  159 (248)
T ss_pred             HHHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcC
Confidence            99875321    1223344567889999999987766655     4699999999999999998       679999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ||+|||+.++..+.+.|++++++|+|||++||++. ++.++||++++|++|++++.|+.+++.
T Consensus       160 Pt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~  221 (248)
T PRK03695        160 PMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEVL  221 (248)
T ss_pred             CcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHHh
Confidence            99999999999999999999877999999999964 578999999999999999999987763

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=100.00  E-value=7.6e-40  Score=320.87  Aligned_cols=170  Identities=34%  Similarity=0.616  Sum_probs=154.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~   58 (173)
T cd03230           1 IEVRNLSKRYGK---------------------KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL-KPDSGEIK   58 (173)
T ss_pred             CEEEEEEEEECC---------------------eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence            468999998851                     24899999999999999999999999999999999976 46799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++.+||.||+.                                           
T Consensus        59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-------------------------------------------   95 (173)
T cd03230          59 VLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK-------------------------------------------   95 (173)
T ss_pred             ECCEEcccchHhhhccEEEEecCCccccCCcHHHHhh-------------------------------------------
Confidence            99998753   35678999999999999999999963                                           


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                       ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||++. ++.+.+|++++|++|++
T Consensus        96 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i  173 (173)
T cd03230          96 -LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI  173 (173)
T ss_pred             -cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence             7999999999999999999999999999999999999999999999877899999999964 57789999999999974

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=100.00  E-value=1.6e-40  Score=391.57  Aligned_cols=214  Identities=30%  Similarity=0.491  Sum_probs=179.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|+|+...                  ++.+|+|+|++|+|||.+||+||||||||||+|+|+|.+ +|.+|+|
T Consensus       478 ~I~~~nVsf~Y~~~~------------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I  538 (711)
T TIGR00958       478 LIEFQDVSFSYPNRP------------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLY-QPTGGQV  538 (711)
T ss_pred             eEEEEEEEEECCCCC------------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCEE
Confidence            599999999997321                  235899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||+++.+    .++++++||+||+.+|+ .|++|||.++..     ..+++    ++.++++..++       ++..|
T Consensus       539 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~~-----~~~~e----~i~~al~~a~l~~~i~~lp~Gld  608 (711)
T TIGR00958       539 LLDGVPLVQYDHHYLHRQVALVGQEPVLFS-GSVRENIAYGLT-----DTPDE----EIMAAAKAANAHDFIMEFPNGYD  608 (711)
T ss_pred             EECCEEHHhcCHHHHHhhceEEecCccccc-cCHHHHHhcCCC-----CCCHH----HHHHHHHHcCCHHHHHhCCCccC
Confidence            999999853    56789999999999996 699999987531     22222    34455555554       44578


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ....||||||||++|||||+++|+||+||||||+||+.+.+.+.+ ..  ..+++|+|+++|+++  ..+.+|+
T Consensus       609 T~ige-~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~--~i~~aD~  682 (711)
T TIGR00958       609 TEVGE-KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLS--TVERADQ  682 (711)
T ss_pred             CcccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHH--HHHhCCE
Confidence            88875 346799999999999999999999999999999999999999988 22  235899999999974  3578999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus       683 IivL~~G~ive~Gt~~eL~~  702 (711)
T TIGR00958       683 ILVLKKGSVVEMGTHKQLME  702 (711)
T ss_pred             EEEEECCEEEEeeCHHHHHh
Confidence            99999999999999999875

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=9e-40  Score=342.87  Aligned_cols=234  Identities=27%  Similarity=0.468  Sum_probs=202.5

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .++.|+.+||...|+.+.+  ++.        ......++++++|+++++||.++|+|.||||||||-.+|.+++. + +
T Consensus       273 ~~~ll~~~~v~v~f~i~~g--~~~--------r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~-s-~  340 (534)
T COG4172         273 APVLLEVEDLRVWFPIKGG--FLR--------RTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIP-S-Q  340 (534)
T ss_pred             CCceEEecceEEEEecCCc--ccc--------ccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcC-c-C
Confidence            6788999999999987632  111        12234579999999999999999999999999999999999773 3 6


Q ss_pred             eEEEECCEeCCh-------hccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545          156 GKITYNGRQFSS-------SLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR  226 (691)
Q Consensus       156 G~I~~~G~~~~~-------~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~  226 (691)
                      |+|.++|+++..       .+|+++..|||||.  +.|.+||.|-+.-+....-| ..++.++.+++.++|+++||+...
T Consensus       341 G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~  419 (534)
T COG4172         341 GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT  419 (534)
T ss_pred             ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH
Confidence            999999999863       36789999999986  89999999999887665533 568899999999999999997543


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~  305 (691)
                      ..+    ++.+.|||||||++|||||+.+|++++||||||+||-+-+.+|+++|++|++ .|.+-++++||. ..+..+|
T Consensus       420 r~R----YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrAl~  494 (534)
T COG4172         420 RNR----YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRALC  494 (534)
T ss_pred             hhc----CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHHhh
Confidence            332    3457899999999999999999999999999999999999999999999986 499999999995 5688999


Q ss_pred             CEEEEecCCeEEEecCHhHHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |+|+||++|+||+.|+.+++++
T Consensus       495 ~~viVm~~GkiVE~G~~~~if~  516 (534)
T COG4172         495 HRVIVMRDGKIVEQGPTEAVFA  516 (534)
T ss_pred             ceEEEEeCCEEeeeCCHHHHhc
Confidence            9999999999999999999954

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=100.00  E-value=1.1e-39  Score=327.37  Aligned_cols=195  Identities=29%  Similarity=0.418  Sum_probs=169.8

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||++.|+.                     +.+|+|+|++|++||++||+|+||||||||+++|+|+. ++.+|+|.
T Consensus         1 l~i~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (201)
T cd03231           1 LEADELTCERDG---------------------RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLS-PPLAGRVL   58 (201)
T ss_pred             CEEEEEEEEeCC---------------------ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEE
Confidence            468899998851                     35899999999999999999999999999999999977 57799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++.+||+||+.+....      .   ..++++++++.+||.+..++.+     +
T Consensus        59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~-----~  124 (201)
T cd03231          59 LNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD------H---SDEQVEEALARVGLNGFEDRPV-----A  124 (201)
T ss_pred             ECCEecccccHHhhhheEEeccccccCCCcCHHHHHHhhccc------c---cHHHHHHHHHHcCChhhhcCch-----h
Confidence            99988642   4567899999999999999999999874311      1   2346788999999987776655     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      .||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||++. +....+|+++++
T Consensus       125 ~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~~~~~~~  198 (201)
T cd03231         125 QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDL-GLSEAGARELDL  198 (201)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch-hhhhccceeEec
Confidence            69999999999999999999999999999999999999999999999888999999999976 467899999887

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=100.00  E-value=9.5e-40  Score=373.31  Aligned_cols=230  Identities=27%  Similarity=0.452  Sum_probs=188.9

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|+...+.          ..++.+.+.+|+|+||+|++||+++|+||||||||||+|+|+|++ + .+|+
T Consensus       274 ~~l~~~~l~~~~~~~~~~----------~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~-~~G~  341 (529)
T PRK15134        274 PLLDVEQLQVAFPIRKGI----------LKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-N-SQGE  341 (529)
T ss_pred             CcccccCcEEEeecCccc----------cccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-C-CCcE
Confidence            369999999999521000          000001246999999999999999999999999999999999976 3 6999


Q ss_pred             EEECCEeCCh-------hccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccc
Q 005545          158 ITYNGRQFSS-------SLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRN  227 (691)
Q Consensus       158 I~~~G~~~~~-------~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~  227 (691)
                      |+++|+++..       .+++.++||+|++  .+++.+||.||+.++...+. ......+.+++++++++.+||. +..+
T Consensus       342 i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~  420 (529)
T PRK15134        342 IWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQ-PTLSAAQREQQVIAVMEEVGLDPETRH  420 (529)
T ss_pred             EEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhcc-ccCChHHHHHHHHHHHHHcCCCHHHHh
Confidence            9999988742       1256799999997  48888999999988653221 1123344556788999999997 4566


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+     +.|||||||||+|||+|+.+|++|||||||+|||+.++..++++|++++++ |+|||++|||+. .+.++||
T Consensus       421 ~~~-----~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d  494 (529)
T PRK15134        421 RYP-----AEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCH  494 (529)
T ss_pred             cCC-----ccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcC
Confidence            655     469999999999999999999999999999999999999999999999875 899999999964 5778999


Q ss_pred             EEEEecCCeEEEecCHhHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++++|++|++++.|+++++.
T Consensus       495 ~i~~l~~G~i~~~~~~~~~~  514 (529)
T PRK15134        495 QVIVLRQGEVVEQGDCERVF  514 (529)
T ss_pred             eEEEEECCEEEEEcCHHHHh
Confidence            99999999999999998874

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=100.00  E-value=1.3e-39  Score=326.58  Aligned_cols=192  Identities=30%  Similarity=0.429  Sum_probs=163.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCceEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGKFSGKI  158 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~-~~~~~G~I  158 (691)
                      |+++||+++|+.                     +.+|+|+||++++||+++|+|+||||||||+++|+|.. ..+.+|+|
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i   59 (200)
T cd03217           1 LEIKDLHVSVGG---------------------KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEI   59 (200)
T ss_pred             CeEEEEEEEeCC---------------------EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEE
Confidence            468999998851                     35899999999999999999999999999999999974 24679999


Q ss_pred             EECCEeCCh----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          159 TYNGRQFSS----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       159 ~~~G~~~~~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      .++|+++..    . .++.++|++|++.+++..|+++++.                                  .     
T Consensus        60 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----  100 (200)
T cd03217          60 LFKGEDITDLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----  100 (200)
T ss_pred             EECCEECCcCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----
Confidence            999998753    1 2346999999999998888887750                                  0     


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh-cCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR-MFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~-~~D~v~~L~  312 (691)
                      ..+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+ .+|++++|+
T Consensus       101 ~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~  179 (200)
T cd03217         101 VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLY  179 (200)
T ss_pred             ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEE
Confidence            01359999999999999999999999999999999999999999999999877899999999975 4656 799999999


Q ss_pred             CCeEEEecCHhHHHHHhhhcC
Q 005545          313 EGSPIYSGRAAQVMDYFGSIG  333 (691)
Q Consensus       313 ~G~iv~~G~~~~~~~~f~~~g  333 (691)
                      +|++++.|+.+ +...|.+.|
T Consensus       180 ~G~i~~~~~~~-~~~~~~~~~  199 (200)
T cd03217         180 DGRIVKSGDKE-LALEIEKKG  199 (200)
T ss_pred             CCEEEEEccHH-HHhhhcccc
Confidence            99999999544 655554443

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.8e-41  Score=362.87  Aligned_cols=215  Identities=32%  Similarity=0.505  Sum_probs=186.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .++++||+|+|+.+                   ..++|+|+||++++||.+||+|+||||||||+++|+|.. ++.+|+|
T Consensus       336 ~l~~~~vsF~y~~~-------------------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~-~~~~G~i  395 (573)
T COG4987         336 ALELRNVSFTYPGQ-------------------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAW-DPQQGSI  395 (573)
T ss_pred             eeeeccceeecCCC-------------------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhcc-CCCCCee
Confidence            79999999999853                   235999999999999999999999999999999999976 5789999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-------RCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~  227 (691)
                      .+||.++..    .+++.+++++|...+|. -|+++||..+.    | +.+.+    .+.++++++||+       +..|
T Consensus       396 ~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~-~Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~  465 (573)
T COG4987         396 TLNGVEIASLDEQALRETISVLTQRVHLFS-GTLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLN  465 (573)
T ss_pred             eECCcChhhCChhhHHHHHhhhccchHHHH-HHHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhh
Confidence            999998753    46789999999999996 49999998753    2 23333    455667777774       3556


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ..+.||||||||++|||+|++|.++++|||||.|||+.+.+++++.|.+-++ |+|+|++||+...  .+.|||
T Consensus       466 t~lge-~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~--le~~dr  541 (573)
T COG4987         466 TWLGE-GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG--LERMDR  541 (573)
T ss_pred             chhcc-CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc--HhhcCE
Confidence            77775 4577999999999999999999999999999999999999999999999776 8999999999764  588999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|+++++|.+++++.
T Consensus       542 Iivl~~Gkiie~G~~~~Ll~  561 (573)
T COG4987         542 IIVLDNGKIIEEGTHAELLA  561 (573)
T ss_pred             EEEEECCeeeecCCHHhhhc
Confidence            99999999999999999875

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=100.00  E-value=2.1e-39  Score=369.77  Aligned_cols=224  Identities=28%  Similarity=0.423  Sum_probs=186.4

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +..|+++||+++|+...                .+.+.+|+|+||+|++||+++|+||||||||||+|+|+|++ ++.+|
T Consensus       277 ~~~l~~~~l~~~~~~~~----------------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~-~p~~G  339 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVD----------------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVL-EPTSG  339 (520)
T ss_pred             CceEEEeccEEEeccCC----------------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCe
Confidence            34799999999995210                01245999999999999999999999999999999999977 46799


Q ss_pred             EEEEC-CEe---CCh-------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-
Q 005545          157 KITYN-GRQ---FSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-  224 (691)
Q Consensus       157 ~I~~~-G~~---~~~-------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-  224 (691)
                      +|.++ |.+   +..       ..++.++|++|++.+++.+||+||+.+.....    ...++..++++++++.+||.+ 
T Consensus       340 ~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~  415 (520)
T TIGR03269       340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEE  415 (520)
T ss_pred             EEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCc
Confidence            99996 532   211       23457999999999999999999998754321    223334467889999999975 


Q ss_pred             ----cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCch
Q 005545          225 ----CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSS  299 (691)
Q Consensus       225 ----~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~  299 (691)
                          ..++.+     ..|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+. 
T Consensus       416 ~~~~~~~~~~-----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-  489 (520)
T TIGR03269       416 KAEEILDKYP-----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-  489 (520)
T ss_pred             cchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-
Confidence                345544     579999999999999999999999999999999999999999999999864 899999999964 


Q ss_pred             HHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          300 RLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       300 ~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .+.++||++++|++|++++.|+++++.+
T Consensus       490 ~~~~~~d~i~~l~~G~i~~~g~~~~~~~  517 (520)
T TIGR03269       490 FVLDVCDRAALMRDGKIVKIGDPEEIVE  517 (520)
T ss_pred             HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence            5788999999999999999999888754

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.2e-41  Score=323.97  Aligned_cols=208  Identities=28%  Similarity=0.443  Sum_probs=185.7

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCC
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLT  187 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lT  187 (691)
                      .+.+|+|+|++|++|.+++++|||||||||||.+++.++ +.++|+|+++|.++..    ++.++++.+-|+..+...+|
T Consensus        13 ~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~-~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~rlT   91 (252)
T COG4604          13 TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLL-KKDSGEITIDGLELTSTPSKELAKKLSILKQENHINSRLT   91 (252)
T ss_pred             CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhc-cccCceEEEeeeecccCChHHHHHHHHHHHhhchhhheeE
Confidence            467999999999999999999999999999999999766 5789999999999853    56778999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg  267 (691)
                      |+|-+.|+.. ...++...++.+..+++.++.++|++..|+..     .+||||||||.-||+.|+.+.+.++||||.++
T Consensus        92 V~dLv~FGRf-PYSqGRlt~eD~~~I~~aieyl~L~~l~dryL-----d~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNN  165 (252)
T COG4604          92 VRDLVGFGRF-PYSQGRLTKEDRRIINEAIEYLHLEDLSDRYL-----DELSGGQRQRAFIAMVLAQDTDYVLLDEPLNN  165 (252)
T ss_pred             HHHHhhcCCC-cccCCCCchHHHHHHHHHHHHhcccchHHHhH-----HhcccchhhhhhhheeeeccCcEEEecCcccc
Confidence            9999998742 11123344566778999999999999888766     47999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          268 LDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ||-+.+.+++++|++++++ |+||+++.||.+ .+..++|+|+-|++|+++..|++++++.
T Consensus       166 LDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~~eii~  225 (252)
T COG4604         166 LDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSPDEIIQ  225 (252)
T ss_pred             cchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCHHHhcC
Confidence            9999999999999999986 999999999976 4678999999999999999999999864

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=100.00  E-value=5.8e-40  Score=376.34  Aligned_cols=218  Identities=31%  Similarity=0.504  Sum_probs=181.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .++++|++|+|+..                   .+.+|+|+|+++++||.++|+||||||||||+|+|+|.+ +|.+|+|
T Consensus       316 ~i~~~~v~~~y~~~-------------------~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i  375 (544)
T TIGR01842       316 HLSVENVTIVPPGG-------------------KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIW-PPTSGSV  375 (544)
T ss_pred             eEEEEEEEEEcCCC-------------------CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence            69999999999631                   135899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHH-----HHHHHHHHcCCCcccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE-----QAEMVIMELGLTRCRNSV  229 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~  229 (691)
                      .+||+++..    .+++.++||+|++.+++. |++||+.+..     ...++++..+     ..++.++.+  ++..|+.
T Consensus       376 ~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~  447 (544)
T TIGR01842       376 RLDGADLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTV  447 (544)
T ss_pred             EECCEehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccc
Confidence            999998753    467899999999999975 9999997532     1223332221     123344433  4455777


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +|+ ..+.||||||||++|||||+++|++|+|||||||||+.++..+.+.|+++..+|+|+|+++|+++  ..+.||+++
T Consensus       448 ~~~-~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~  524 (544)
T TIGR01842       448 IGP-GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKIL  524 (544)
T ss_pred             cCC-CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEE
Confidence            765 35679999999999999999999999999999999999999999999999766899999999975  357899999


Q ss_pred             EecCCeEEEecCHhHHHH
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++++.|+++++.+
T Consensus       525 ~l~~G~i~~~g~~~~l~~  542 (544)
T TIGR01842       525 VLQDGRIARFGERDEVLA  542 (544)
T ss_pred             EEECCEEEeeCCHHHHhh
Confidence            999999999999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=100.00  E-value=8.5e-40  Score=378.31  Aligned_cols=214  Identities=32%  Similarity=0.510  Sum_probs=181.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                    +.+|+|+|++++|||.++|+|+||||||||+|+|+|+. +|.+|+|
T Consensus       334 ~I~~~~vsf~y~~~--------------------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~p~~G~I  392 (588)
T PRK13657        334 AVEFDDVSFSYDNS--------------------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVF-DPQSGRI  392 (588)
T ss_pred             eEEEEEEEEEeCCC--------------------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCCEE
Confidence            59999999999621                    24899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~  227 (691)
                      .+||+++.+    .+++.++||+|++.+|+ .|++||+.++.    + +.++++    +.++++..+       +++..|
T Consensus       393 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gld  462 (588)
T PRK13657        393 LIDGTDIRTVTRASLRRNIAVVFQDAGLFN-RSIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYD  462 (588)
T ss_pred             EECCEEhhhCCHHHHHhheEEEecCccccc-ccHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCccccc
Confidence            999998864    56789999999999996 59999998752    1 223332    333444444       345578


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ..+.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++.+ ++|+|++||+++  ..+.+|+
T Consensus       463 t~i~~-~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~  538 (588)
T PRK13657        463 TVVGE-RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADR  538 (588)
T ss_pred             chhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCE
Confidence            88875 3466999999999999999999999999999999999999999999999864 799999999974  4588999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++.+
T Consensus       539 ii~l~~G~i~~~g~~~~l~~  558 (588)
T PRK13657        539 ILVFDNGRVVESGSFDELVA  558 (588)
T ss_pred             EEEEECCEEEEeCCHHHHHH
Confidence            99999999999999998864

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=100.00  E-value=2.2e-39  Score=324.20  Aligned_cols=194  Identities=28%  Similarity=0.403  Sum_probs=165.8

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|.                     .+.+|+|+||++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         1 l~~~~l~~~~~---------------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (198)
T TIGR01189         1 LAARNLACSRG---------------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL-RPDSGEVR   58 (198)
T ss_pred             CEEEEEEEEEC---------------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCccEEE
Confidence            46889998885                     135899999999999999999999999999999999976 57799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++.+||.||+.+....+   . . +  .++++++++.+||.+..++.++     
T Consensus        59 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~-~-~--~~~~~~~l~~~~l~~~~~~~~~-----  126 (198)
T TIGR01189        59 WNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIH---G-G-A--QRTIEDALAAVGLTGFEDLPAA-----  126 (198)
T ss_pred             ECCEEcccchHHhhhheEEeccCcccccCCcHHHHHHHHHHHc---C-C-c--HHHHHHHHHHcCCHHHhcCChh-----
Confidence            99988643   34568999999998998899999998764332   1 1 1  2357789999999887777664     


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                      .||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++..   -.+++++.
T Consensus       127 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~  197 (198)
T TIGR01189       127 QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR  197 (198)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence            699999999999999999999999999999999999999999999998789999999999754   35677664

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.2e-39  Score=356.40  Aligned_cols=218  Identities=28%  Similarity=0.449  Sum_probs=193.8

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .+..++.+|++++|+                     ..++|+||||++++||++||+|.||||||||+|+|+|.+ +|++
T Consensus         5 ~~~ll~~~~i~K~Fg---------------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~-~p~~   62 (500)
T COG1129           5 TPPLLELRGISKSFG---------------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVY-PPDS   62 (500)
T ss_pred             ccceeeeecceEEcC---------------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcc-cCCC
Confidence            345789999999887                     246999999999999999999999999999999999976 5889


Q ss_pred             eEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc
Q 005545          156 GKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNSV  229 (691)
Q Consensus       156 G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~  229 (691)
                      |+|++||++...     .....|+.|+||..+.|+|||.||+.++...+.+ .-++++...+++.++|+.+|+....+++
T Consensus        63 G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~  142 (500)
T COG1129          63 GEILIDGKPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTL  142 (500)
T ss_pred             ceEEECCEEccCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhh
Confidence            999999998752     3456899999999999999999999876543321 2356777788899999999996457777


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      ++     .||+||||.|.|||||..+++||+||||||+|+......+.+++++|+++|.+||++||.. .+++++|||+.
T Consensus       143 v~-----~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl-~Ei~~i~Drit  216 (500)
T COG1129         143 VG-----DLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRL-DEVFEIADRIT  216 (500)
T ss_pred             hh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcH-HHHHHhcCEEE
Confidence            76     5999999999999999999999999999999999999999999999999999999999995 67999999999


Q ss_pred             EecCCeEEEecC
Q 005545          310 VLSEGSPIYSGR  321 (691)
Q Consensus       310 ~L~~G~iv~~G~  321 (691)
                      ||.+|+.+..++
T Consensus       217 VlRDG~~v~~~~  228 (500)
T COG1129         217 VLRDGRVVGTRP  228 (500)
T ss_pred             EEeCCEEeeecc
Confidence            999999998877

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=100.00  E-value=3.1e-39  Score=335.09  Aligned_cols=202  Identities=30%  Similarity=0.412  Sum_probs=173.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|+|
T Consensus         4 ~l~~~~l~~~~~~---------------------~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~-~p~~G~i   61 (251)
T PRK09544          4 LVSLENVSVSFGQ---------------------RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLV-APDEGVI   61 (251)
T ss_pred             EEEEeceEEEECC---------------------ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCceEE
Confidence            6899999999861                     35899999999999999999999999999999999987 4679999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCC--CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPH--LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~--lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      .++|       +..++|++|++.+++.  .|+.+++.+.      ....    .+++.++++.+||.+..++.+     +
T Consensus        62 ~~~~-------~~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~  119 (251)
T PRK09544         62 KRNG-------KLRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----Q  119 (251)
T ss_pred             EECC-------ccCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----h
Confidence            9987       3469999999887775  4777776431      1111    235678999999988777655     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      .|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. ++.+.||++++|+ |+
T Consensus       120 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~-~~  197 (251)
T PRK09544        120 KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLN-HH  197 (251)
T ss_pred             hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEC-Cc
Confidence            69999999999999999999999999999999999999999999999875 899999999964 5778999999996 57


Q ss_pred             EEEecCHhHHH
Q 005545          316 PIYSGRAAQVM  326 (691)
Q Consensus       316 iv~~G~~~~~~  326 (691)
                      +++.|+++++.
T Consensus       198 i~~~g~~~~~~  208 (251)
T PRK09544        198 ICCSGTPEVVS  208 (251)
T ss_pred             eEeeCCHHHHh
Confidence            99999988763

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=1.2e-38  Score=332.95  Aligned_cols=229  Identities=22%  Similarity=0.306  Sum_probs=186.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccC-CCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATS-HGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~-~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +.|+++||+.+|+......  .+.. +..+......+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~-~p~~G   79 (264)
T PRK13546          3 VSVNIKNVTKEYRIYRTNK--ERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSL-SPTVG   79 (264)
T ss_pred             ceEEEeeeEEEEEecccch--HHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-CCCce
Confidence            6789999999998532110  0000 000111224467999999999999999999999999999999999977 47799


Q ss_pred             EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      +|.++|+         ++++.|+..+.+.+|+.||+.+.....   ....++..+.++++++.++|.+..++.+     +
T Consensus        80 ~I~~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~  142 (264)
T PRK13546         80 KVDRNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----K  142 (264)
T ss_pred             EEEECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----c
Confidence            9999985         457778877788899999998754332   2234445556778899999987777655     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      .||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++|++|++
T Consensus       143 ~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i  221 (264)
T PRK13546        143 KYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKL  221 (264)
T ss_pred             cCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEE
Confidence            69999999999999999999999999999999999999999999999878999999999964 57789999999999999


Q ss_pred             EEecCHhHHHH
Q 005545          317 IYSGRAAQVMD  327 (691)
Q Consensus       317 v~~G~~~~~~~  327 (691)
                      ++.|+.+++.+
T Consensus       222 ~~~g~~~~~~~  232 (264)
T PRK13546        222 KDYGELDDVLP  232 (264)
T ss_pred             EEeCCHHHHHH
Confidence            99999988765

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.5e-39  Score=370.25  Aligned_cols=215  Identities=23%  Similarity=0.403  Sum_probs=180.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.+.                       .+|+|+||+|++||+++|+||||||||||+|+|+|++ ++++|+
T Consensus       264 ~~l~~~~l~~~~~-----------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~p~~G~  319 (510)
T PRK09700        264 TVFEVRNVTSRDR-----------------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVD-KRAGGE  319 (510)
T ss_pred             cEEEEeCccccCC-----------------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-cCCCCe
Confidence            4689999986431                       2799999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCCh-----hccccEEEEccC---CCCCCCCCHHHHHHHHHhhc---CCC--C-CCHHHHHHHHHHHHHHcCCC
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQD---DVLYPHLTVLETLSYAALLR---LPK--K-LTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~---~~l~~~lTV~E~l~~~~~~~---~~~--~-~~~~~~~~~v~~~l~~lgL~  223 (691)
                      |.++|+++..     ..++.+|||+|+   ..+++.+||+||+.+....+   ...  . ....+..++++++++.+||.
T Consensus       320 I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  399 (510)
T PRK09700        320 IRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALK  399 (510)
T ss_pred             EEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCC
Confidence            9999988742     235679999998   46888999999998753211   000  0 12233345678999999996


Q ss_pred             -ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHH
Q 005545          224 -RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLY  302 (691)
Q Consensus       224 -~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~  302 (691)
                       +..++.++     .|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|+|||++|||+. .+.
T Consensus       400 ~~~~~~~~~-----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~  473 (510)
T PRK09700        400 CHSVNQNIT-----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EII  473 (510)
T ss_pred             CCCccCccc-----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHH
Confidence             66777664     69999999999999999999999999999999999999999999999888999999999964 678


Q ss_pred             hcCCEEEEecCCeEEEecCH
Q 005545          303 RMFDKVVVLSEGSPIYSGRA  322 (691)
Q Consensus       303 ~~~D~v~~L~~G~iv~~G~~  322 (691)
                      ++||++++|++|++++.++.
T Consensus       474 ~~~d~i~~l~~G~i~~~~~~  493 (510)
T PRK09700        474 TVCDRIAVFCEGRLTQILTN  493 (510)
T ss_pred             hhCCEEEEEECCEEEEEecC
Confidence            99999999999999988765

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=100.00  E-value=4.8e-39  Score=327.66  Aligned_cols=209  Identities=30%  Similarity=0.441  Sum_probs=170.9

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+....              ...++.+|+|+||+|++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         2 l~~~~l~~~~~~~~~--------------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~i~   66 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQ--------------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANY-LPDSGRIL   66 (224)
T ss_pred             EEEEeeEEEeecccC--------------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeEE
Confidence            789999999963210              001246999999999999999999999999999999999977 46799999


Q ss_pred             EC--CE--eCCh-------hc-cccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-c
Q 005545          160 YN--GR--QFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-R  226 (691)
Q Consensus       160 ~~--G~--~~~~-------~~-~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~  226 (691)
                      ++  |.  ++..       .. ++.++|++|++.+++.+||+|++.+.....   .....+..+++.++++.+||.+. .
T Consensus        67 ~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~  143 (224)
T TIGR02324        67 VRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLW  143 (224)
T ss_pred             EecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhh
Confidence            98  43  4321       12 357999999999999999999998754321   22334445678889999999753 3


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      +..+     ++||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++ ..+.++||
T Consensus       144 ~~~~-----~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~-~~~~~~~d  217 (224)
T TIGR02324       144 HLPP-----ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDE-EVRELVAD  217 (224)
T ss_pred             hCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcc
Confidence            4443     57999999999999999999999999999999999999999999999987799999999995 45667999


Q ss_pred             EEEEec
Q 005545          307 KVVVLS  312 (691)
Q Consensus       307 ~v~~L~  312 (691)
                      +++.+.
T Consensus       218 ~i~~~~  223 (224)
T TIGR02324       218 RVMDVT  223 (224)
T ss_pred             eeEecC
Confidence            998763

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=100.00  E-value=1e-39  Score=376.39  Aligned_cols=216  Identities=28%  Similarity=0.476  Sum_probs=183.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                   ++.+|+|+|+++++||.++|+|+||||||||+|+|+|+. .+.+|+|
T Consensus       330 ~i~~~~v~f~y~~~-------------------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~-~~~~G~I  389 (571)
T TIGR02203       330 DVEFRNVTFRYPGR-------------------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFY-EPDSGQI  389 (571)
T ss_pred             eEEEEEEEEEcCCC-------------------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeE
Confidence            59999999999631                   135899999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      ++||.++++    .+++.++||+|++.+|+ .|++|||.++.    +++.+++    +++++++.+|+       ++..|
T Consensus       390 ~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~-~Ti~~Ni~~~~----~~~~~~~----~i~~~l~~~~l~~~i~~lp~gld  460 (571)
T TIGR02203       390 LLDGHDLADYTLASLRRQVALVSQDVVLFN-DTIANNIAYGR----TEQADRA----EIERALAAAYAQDFVDKLPLGLD  460 (571)
T ss_pred             EECCEeHHhcCHHHHHhhceEEccCccccc-ccHHHHHhcCC----CCCCCHH----HHHHHHHHcChHHHHHhCcCccc
Confidence            999998753    56788999999999996 49999998652    1123333    34455555554       45578


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+. .+.||||||||++|||+++.+|++++||||||+||+.+++.+++.|+++++ ++|+|++||++.  ..+.||+
T Consensus       461 t~i~~~-g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~-~~tiIiitH~~~--~~~~~D~  536 (571)
T TIGR02203       461 TPIGEN-GVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQ-GRTTLVIAHRLS--TIEKADR  536 (571)
T ss_pred             ceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhC-CCEEEEEehhhH--HHHhCCE
Confidence            888864 467999999999999999999999999999999999999999999999854 699999999974  4688999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|+++..|+++++.+
T Consensus       537 ii~l~~g~i~~~g~~~~l~~  556 (571)
T TIGR02203       537 IVVMDDGRIVERGTHNELLA  556 (571)
T ss_pred             EEEEeCCEEEeeCCHHHHHH
Confidence            99999999999999999853

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=100.00  E-value=2.1e-39  Score=319.17  Aligned_cols=171  Identities=42%  Similarity=0.684  Sum_probs=153.7

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.
T Consensus         1 i~~~~l~~~~~~---------------------~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (178)
T cd03229           1 LELKNVSKRYGQ---------------------KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE-EPDSGSIL   58 (178)
T ss_pred             CEEEEEEEEECC---------------------eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceEEE
Confidence            468899998851                     35899999999999999999999999999999999976 56799999


Q ss_pred             ECCEeCCh------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          160 YNGRQFSS------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       160 ~~G~~~~~------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      ++|+++..      ..++.++|++|++.+++.+|++||+.+.                                      
T Consensus        59 ~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------  100 (178)
T cd03229          59 IDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------  100 (178)
T ss_pred             ECCEEccccchhHHHHhhcEEEEecCCccCCCCCHHHheeec--------------------------------------
Confidence            99988742      3457899999999999899999997532                                      


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                          ||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+.+|++++|+
T Consensus       101 ----lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~  175 (178)
T cd03229         101 ----LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLR  175 (178)
T ss_pred             ----CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEe
Confidence                7999999999999999999999999999999999999999999999887 899999999964 5777999999999


Q ss_pred             CCe
Q 005545          313 EGS  315 (691)
Q Consensus       313 ~G~  315 (691)
                      +|+
T Consensus       176 ~g~  178 (178)
T cd03229         176 DGK  178 (178)
T ss_pred             CCC
Confidence            885

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.9e-39  Score=368.56  Aligned_cols=222  Identities=24%  Similarity=0.392  Sum_probs=184.1

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++|++++|...                  +++.+|+|+||++++||+++|+||||||||||||+|+|.++++.+|+
T Consensus       256 ~~l~~~~l~~~~~~~------------------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~  317 (500)
T TIGR02633       256 VILEARNLTCWDVIN------------------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN  317 (500)
T ss_pred             ceEEEeCCccccccc------------------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            368999999876311                  01358999999999999999999999999999999999874347999


Q ss_pred             EEECCEeCCh-----hccccEEEEccCC---CCCCCCCHHHHHHHHHhhcCC--CCCCHHHHHHHHHHHHHHcCCCc-cc
Q 005545          158 ITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHLTVLETLSYAALLRLP--KKLTREEKIEQAEMVIMELGLTR-CR  226 (691)
Q Consensus       158 I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~lTV~E~l~~~~~~~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~  226 (691)
                      |.++|+++..     ..++.+|||+|+.   .+++.+||+||+.++......  ......+.+++++++++.++|.+ ..
T Consensus       318 i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~  397 (500)
T TIGR02633       318 VFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASP  397 (500)
T ss_pred             EEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCc
Confidence            9999998742     2356899999995   588999999999875321111  01223334567889999999964 46


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.++     .|||||||||+|||+|+.+|++|||||||+|||+.++..+.++|++++++|.|||++|||+. ++.++||
T Consensus       398 ~~~~~-----~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d  471 (500)
T TIGR02633       398 FLPIG-----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSD  471 (500)
T ss_pred             cCccc-----cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCC
Confidence            66664     69999999999999999999999999999999999999999999999988999999999964 6889999


Q ss_pred             EEEEecCCeEEEecCHh
Q 005545          307 KVVVLSEGSPIYSGRAA  323 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~  323 (691)
                      ++++|++|+++..++.+
T Consensus       472 ~v~~l~~G~i~~~~~~~  488 (500)
T TIGR02633       472 RVLVIGEGKLKGDFVNH  488 (500)
T ss_pred             EEEEEECCEEEEEEccc
Confidence            99999999999877544

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=100.00  E-value=2.8e-39  Score=328.55  Aligned_cols=208  Identities=27%  Similarity=0.398  Sum_probs=170.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++++++..                   ++.+|+|+||++++||+++|+||||||||||+++|+|.. ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i   61 (221)
T cd03244           2 DIEFKNVSLRYRPN-------------------LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV-ELSSGSI   61 (221)
T ss_pred             cEEEEEEEEecCCC-------------------CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEE
Confidence            37899999998621                   135899999999999999999999999999999999976 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN-------  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------  227 (691)
                      .++|.++..    ..++.++|++|++.+++ .||+||+.+..      ....    +++.+.++.+++.+..+       
T Consensus        62 ~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~  130 (221)
T cd03244          62 LIDGVDISKIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLD  130 (221)
T ss_pred             EECCEEhHhCCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhcccccc
Confidence            999998743    35678999999998776 59999986421      1121    23455566666654332       


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.. +..++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+. .||+
T Consensus       131 ~~~-~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~-~~d~  206 (221)
T cd03244         131 TVV-EEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLD-TII-DSDR  206 (221)
T ss_pred             ccc-ccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHH-HHh-hCCE
Confidence            111 124568999999999999999999999999999999999999999999999865 689999999975 454 5999


Q ss_pred             EEEecCCeEEEecC
Q 005545          308 VVVLSEGSPIYSGR  321 (691)
Q Consensus       308 v~~L~~G~iv~~G~  321 (691)
                      +++|++|++++.|+
T Consensus       207 i~~l~~g~~~~~~~  220 (221)
T cd03244         207 ILVLDKGRVVEFDS  220 (221)
T ss_pred             EEEEECCeEEecCC
Confidence            99999999998875

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=100.00  E-value=3.3e-39  Score=320.81  Aligned_cols=176  Identities=34%  Similarity=0.537  Sum_probs=152.1

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh------hccccEEEEccCCC--CCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------SLKRKTGFVTQDDV--LYP  184 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~------~~~~~igyv~Q~~~--l~~  184 (691)
                      +.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.++|+++..      ..++.++|++|++.  ++ 
T Consensus         5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-   82 (190)
T TIGR01166         5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLL-RPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-   82 (190)
T ss_pred             cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence            46999999999999999999999999999999999977 4679999999998741      24567999999973  45 


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 005545          185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEP  264 (691)
Q Consensus       185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEP  264 (691)
                      ..||+||+.+.....   ....++..++++++++.+||.+..++.+     +.||||||||++|||||+.+|++++||||
T Consensus        83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llllDEP  154 (190)
T TIGR01166        83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPT-----HCLSGGEKKRVAIAGAVAMRPDVLLLDEP  154 (190)
T ss_pred             cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence            579999998865322   2234445567889999999987777665     46999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545          265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      |+|||+.++..+.+.|++++++|+|||++||++.
T Consensus       155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~  188 (190)
T TIGR01166       155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD  188 (190)
T ss_pred             cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence            9999999999999999999888999999999964

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=1.4e-39  Score=382.86  Aligned_cols=220  Identities=31%  Similarity=0.513  Sum_probs=189.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|.|+..                  ....||+|+|+++++|+.+||+|||||||||.+-+|-..+ .|++|+|
T Consensus       987 ~I~~~~V~F~YPsR------------------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfY-dp~~G~V 1047 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTR------------------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFY-DPDAGKV 1047 (1228)
T ss_pred             EEEEeeeEeeCCCC------------------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhc-CCCCCeE
Confidence            59999999999942                  2357999999999999999999999999999999998654 6789999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH-HH--HcCCCcccccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-IM--ELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~-l~--~lgL~~~~~~~vg  231 (691)
                      .+||+++.+    .+|+++|.|.|+|.||. -|++|||.|+.    . +.+.+|..+.++.. +.  ..+|++..||.+|
T Consensus      1048 ~IDg~dik~lnl~~LR~~i~lVsQEP~LF~-~TIrENI~YG~----~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFN-GTIRENIAYGS----E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG 1121 (1228)
T ss_pred             EECCcccccCCHHHHHHhcceeccCchhhc-ccHHHHHhccC----C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC
Confidence            999999864    57999999999999995 69999999982    1 24555544333221 11  1378999999999


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      + ...+||||||||++||||+++||+||||||.||+||+++.+.+-+.|.+... |+|.|++.|+++.  .+.||.|.|+
T Consensus      1122 e-rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~-gRT~IvIAHRLST--IqnaD~I~Vi 1197 (1228)
T KOG0055|consen 1122 E-RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAME-GRTTIVIAHRLST--IQNADVIAVL 1197 (1228)
T ss_pred             c-ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhc-CCcEEEEecchhh--hhcCCEEEEE
Confidence            6 3456999999999999999999999999999999999999999999999765 8999999999764  5899999999


Q ss_pred             cCCeEEEecCHhHHHH
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      ++|++++.|+++++++
T Consensus      1198 ~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1198 KNGKVVEQGTHDELLA 1213 (1228)
T ss_pred             ECCEEEecccHHHHHh
Confidence            9999999999999986

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=100.00  E-value=1.4e-39  Score=332.12  Aligned_cols=208  Identities=30%  Similarity=0.478  Sum_probs=169.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      -.|+++|++++|+...                  .+.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+|+
T Consensus        10 ~~l~~~~l~~~~~~~~------------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~   70 (226)
T cd03248          10 GIVKFQNVTFAYPTRP------------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFY-QPQGGQ   70 (226)
T ss_pred             ceEEEEEEEEEeCCCC------------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-CCCCcE
Confidence            4689999999996311                  135899999999999999999999999999999999977 577999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTR---EEKIEQAEMVIMEL--GLTRCRNS  228 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~  228 (691)
                      |.++|+++..    ..++.++|++|++.+++ .||+||+.++...   .....   ......++++++.+  |+.+..+.
T Consensus        71 i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~---~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~  146 (226)
T cd03248          71 VLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQS---CSFECVKEAAQKAHAHSFISELASGYDTEVGE  146 (226)
T ss_pred             EEECCCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCC---CCHHHHHHHHHHcCcHHHHHhccccccchhhc
Confidence            9999987642    34568999999998886 6999999875321   11111   11112356778888  77665555


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .+     +.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+ ..||++
T Consensus       147 ~~-----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~-~~~d~i  218 (226)
T cd03248         147 KG-----SQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLS-TV-ERADQI  218 (226)
T ss_pred             CC-----CcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHH-HH-HhCCEE
Confidence            43     57999999999999999999999999999999999999999999999876 689999999975 45 459999


Q ss_pred             EEecCCeE
Q 005545          309 VVLSEGSP  316 (691)
Q Consensus       309 ~~L~~G~i  316 (691)
                      ++|++|++
T Consensus       219 ~~l~~g~i  226 (226)
T cd03248         219 LVLDGGRI  226 (226)
T ss_pred             EEecCCcC
Confidence            99999974

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=4.2e-39  Score=322.81  Aligned_cols=193  Identities=23%  Similarity=0.310  Sum_probs=165.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|..                     +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|+
T Consensus         2 l~~~~l~~~~~~---------------------~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~   59 (200)
T PRK13540          2 LDVIELDFDYHD---------------------QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL-NPEKGEIL   59 (200)
T ss_pred             EEEEEEEEEeCC---------------------eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeeEE
Confidence            789999998851                     35999999999999999999999999999999999976 57899999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|+..+++.+||+||+.+....  .    ..  ..+++++++.+++.+..++.+     .
T Consensus        60 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~-----~  126 (200)
T PRK13540         60 FERQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPC-----G  126 (200)
T ss_pred             ECCCccccCHHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCCh-----h
Confidence            99988752   3567899999999998899999999876421  1    11  236788999999987666655     3


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      .||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++..  .+.+|...
T Consensus       127 ~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--~~~~d~~~  197 (200)
T PRK13540        127 LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP--LNKADYEE  197 (200)
T ss_pred             hcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh--ccccchhh
Confidence            699999999999999999999999999999999999999999999998779999999999653  45677543

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=5.6e-39  Score=323.69  Aligned_cols=198  Identities=27%  Similarity=0.389  Sum_probs=168.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.                     +.+|+|+||+|++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus         2 ~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i   59 (207)
T PRK13539          2 MLEGEDLACVRGG---------------------RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL-PPAAGTI   59 (207)
T ss_pred             EEEEEeEEEEECC---------------------eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence            5899999999851                     35899999999999999999999999999999999976 4679999


Q ss_pred             EECCEeCCh-hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcc
Q 005545          159 TYNGRQFSS-SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       159 ~~~G~~~~~-~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~  237 (691)
                      .++|.++.. ..++.++|++|++.+++.+||+||+.+....+   ...    .++++++++.+||.+..++.+     +.
T Consensus        60 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~  127 (207)
T PRK13539         60 KLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GY  127 (207)
T ss_pred             EECCEeCcchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hh
Confidence            999987642 25678999999998888999999998754322   111    234788999999987666655     46


Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. ++..  |+++.+..
T Consensus       128 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~--~~~~~~~~  200 (207)
T PRK13539        128 LSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPL-GLPG--ARELDLGP  200 (207)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCch-hhcc--CcEEeecC
Confidence            9999999999999999999999999999999999999999999999878999999999965 4544  88887743

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=5.2e-39  Score=317.55  Aligned_cols=160  Identities=31%  Similarity=0.523  Sum_probs=144.8

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL  186 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l  186 (691)
                      +|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|.++|+++..     ..++.++|++|++   .+++.+
T Consensus        15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~   93 (182)
T cd03215          15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLR-PPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL   93 (182)
T ss_pred             eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC
Confidence            589999999999999999999999999999999977 4779999999988753     2456899999984   578889


Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545          187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS  266 (691)
Q Consensus       187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts  266 (691)
                      |++||+.+...                                        ||||||||++|||||+.+|++|||||||+
T Consensus        94 t~~e~l~~~~~----------------------------------------LS~G~~qrl~la~al~~~p~llllDEP~~  133 (182)
T cd03215          94 SVAENIALSSL----------------------------------------LSGGNQQKVVLARWLARDPRVLILDEPTR  133 (182)
T ss_pred             cHHHHHHHHhh----------------------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCc
Confidence            99999876421                                        79999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      |||+.++..+.+.|++++++|+|+|+++|++ +++.++||++++|++|++
T Consensus       134 ~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~-~~~~~~~d~v~~l~~G~i  182 (182)
T cd03215         134 GVDVGAKAEIYRLIRELADAGKAVLLISSEL-DELLGLCDRILVMYEGRI  182 (182)
T ss_pred             CCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH-HHHHHhCCEEEEecCCcC
Confidence            9999999999999999987789999999996 468889999999999974

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=2.9e-39  Score=366.10  Aligned_cols=209  Identities=22%  Similarity=0.332  Sum_probs=179.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|+.                     +.+|+|+|+++++||+++|+||||||||||||+|+|++ ++++|+|
T Consensus         3 ~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~-~p~~G~i   60 (490)
T PRK10938          3 SLQISQGTFRLSD---------------------TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGEL-PLLSGER   60 (490)
T ss_pred             eEEEEeEEEEcCC---------------------eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCceE
Confidence            5899999999851                     24899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCC--C-C-----CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVL--Y-P-----HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR  226 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l--~-~-----~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~  226 (691)
                      .++|.++..    ..++.++|++|++..  + +     .+||+|++.+.           .+..++++++++.+||.+..
T Consensus        61 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~  129 (490)
T PRK10938         61 QSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALL  129 (490)
T ss_pred             EECCcccccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhh
Confidence            999976532    234569999998643  1 1     47888876431           12245688999999998877


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.++     .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||
T Consensus       130 ~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d  203 (490)
T PRK10938        130 DRRFK-----YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQ  203 (490)
T ss_pred             hCCcc-----cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCC
Confidence            77664     69999999999999999999999999999999999999999999999888999999999964 5789999


Q ss_pred             EEEEecCCeEEEecCHhHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~  326 (691)
                      ++++|++|+++..|+++++.
T Consensus       204 ~v~~l~~G~i~~~~~~~~~~  223 (490)
T PRK10938        204 FAGVLADCTLAETGEREEIL  223 (490)
T ss_pred             EEEEEECCEEEEeCCHHHHh
Confidence            99999999999999988764

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=100.00  E-value=1.9e-39  Score=382.09  Aligned_cols=216  Identities=31%  Similarity=0.516  Sum_probs=182.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+|+|+..                   .+.+|+|+|+++++||.+||+|+||||||||+|+|+|+. .|.+|+
T Consensus       454 ~~i~~~~vsf~y~~~-------------------~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~-~p~~G~  513 (694)
T TIGR01846       454 GAITFENIRFRYAPD-------------------SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLY-TPQHGQ  513 (694)
T ss_pred             CeEEEEEEEEEcCCC-------------------CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCce
Confidence            369999999999732                   135899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCR  226 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~  226 (691)
                      |++||+++.+    .+|+.++||+|++.+++ .|++|||.++.    + ..+.++    +.++++..+       |++..
T Consensus       514 I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~-~ti~eNi~~~~----~-~~~~~~----i~~a~~~~~l~~~i~~lp~gl  583 (694)
T TIGR01846       514 VLVDGVDLAIADPAWLRRQMGVVLQENVLFS-RSIRDNIALCN----P-GAPFEH----VIHAAKLAGAHDFISELPQGY  583 (694)
T ss_pred             EEECCEehhhCCHHHHHHhCeEEccCCeehh-hhHHHHHhcCC----C-CCCHHH----HHHHHHHcChHHHHHhCcCcc
Confidence            9999999864    57889999999999996 59999997642    1 223332    333344433       34557


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ||.+|+. .+.||||||||++|||||+++|++|+||||||+||+.++..+.+.|+++. +++|+|++||+++.  .+.||
T Consensus       584 ~t~i~~~-g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~--~~~~d  659 (694)
T TIGR01846       584 NTEVGEK-GANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST--VRACD  659 (694)
T ss_pred             CcEecCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH--HHhCC
Confidence            8888763 46799999999999999999999999999999999999999999999985 47999999999753  46799


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++++|++|++++.|+++++.+
T Consensus       660 ~ii~l~~G~i~~~g~~~~l~~  680 (694)
T TIGR01846       660 RIIVLEKGQIAESGRHEELLA  680 (694)
T ss_pred             EEEEEeCCEEEEeCCHHHHHH
Confidence            999999999999999999864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=100.00  E-value=4.6e-39  Score=315.39  Aligned_cols=169  Identities=36%  Similarity=0.606  Sum_probs=151.1

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+..                   ++.+++|+|+++++||+++|+||||||||||+++|+|.. ++.+|+|.
T Consensus         1 i~~~~l~~~~~~~-------------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~   60 (173)
T cd03246           1 LEVENVSFRYPGA-------------------EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLL-RPTSGRVR   60 (173)
T ss_pred             CEEEEEEEEcCCC-------------------CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCeEE
Confidence            4689999988621                   135899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      ++|.++..    ..++.++|++|++.+++ .||+||+                                           
T Consensus        61 ~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l-------------------------------------------   96 (173)
T cd03246          61 LDGADISQWDPNELGDHVGYLPQDDELFS-GSIAENI-------------------------------------------   96 (173)
T ss_pred             ECCEEcccCCHHHHHhheEEECCCCcccc-CcHHHHC-------------------------------------------
Confidence            99988743    34678999999998887 4999986                                           


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                        ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+ +.||++++|++|+
T Consensus        97 --LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~  172 (173)
T cd03246          97 --LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGR  172 (173)
T ss_pred             --cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCC
Confidence              7999999999999999999999999999999999999999999999877999999999974 45 6899999999997


Q ss_pred             E
Q 005545          316 P  316 (691)
Q Consensus       316 i  316 (691)
                      +
T Consensus       173 i  173 (173)
T cd03246         173 V  173 (173)
T ss_pred             C
Confidence            4

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=1.1e-39  Score=406.16  Aligned_cols=220  Identities=27%  Similarity=0.451  Sum_probs=184.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC------
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG------  152 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~------  152 (691)
                      .|+|+||+|+|+...                  .+.+|+|+||+|++|+.+||+||||||||||+++|.|++.+      
T Consensus      1165 ~I~f~nVsF~Y~~~~------------------~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~ 1226 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRP------------------NVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHI 1226 (1466)
T ss_pred             eEEEEEEEEECCCCC------------------CCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccc
Confidence            599999999997321                  23599999999999999999999999999999999998753      


Q ss_pred             -----------------------------------------------CCceEEEECCEeCCh----hccccEEEEccCCC
Q 005545          153 -----------------------------------------------KFSGKITYNGRQFSS----SLKRKTGFVTQDDV  181 (691)
Q Consensus       153 -----------------------------------------------~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~  181 (691)
                                                                     +.+|+|++||+++.+    .+|+.+|||+|++.
T Consensus      1227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~ 1306 (1466)
T PTZ00265       1227 VFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPM 1306 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCc
Confidence                                                           159999999999853    57899999999999


Q ss_pred             CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH-----HHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545          182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQA-----EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP  256 (691)
Q Consensus       182 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P  256 (691)
                      +|+ .|++|||.|+.    + ..+.++.++.+     ++.++  .|++..||.+|+ ....||||||||++|||||+++|
T Consensus      1307 LF~-gTIreNI~~g~----~-~at~eeI~~A~k~A~l~~fI~--~LP~GydT~VGe-~G~~LSGGQkQRIaIARALlr~p 1377 (1466)
T PTZ00265       1307 LFN-MSIYENIKFGK----E-DATREDVKRACKFAAIDEFIE--SLPNKYDTNVGP-YGKSLSGGQKQRIAIARALLREP 1377 (1466)
T ss_pred             ccc-ccHHHHHhcCC----C-CCCHHHHHHHHHHcCCHHHHH--hCccccCCccCC-CCCcCCHHHHHHHHHHHHHhcCC
Confidence            995 79999999863    1 23444332222     22222  457788999995 44669999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCEEEEecC----CeEE-EecCHhHHHH
Q 005545          257 SCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDKVVVLSE----GSPI-YSGRAAQVMD  327 (691)
Q Consensus       257 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~~  327 (691)
                      +|||||||||+||+.+.+.|.+.|+++. .+++|+|+++|+++.  .+.||+|++|++    |+++ +.|+++++++
T Consensus      1378 ~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst--i~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265       1378 KILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS--IKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred             CEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH--HHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence            9999999999999999999999999997 368999999999743  578999999999    9955 8999999864

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=100.00  E-value=4.7e-39  Score=316.64  Aligned_cols=175  Identities=34%  Similarity=0.531  Sum_probs=154.1

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+..                   .+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 i~~~~~~~~~~~~-------------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~   60 (178)
T cd03247           1 LSINNVSFSYPEQ-------------------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL-KPQQGEIT   60 (178)
T ss_pred             CEEEEEEEEeCCC-------------------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCEEE
Confidence            4789999988621                   124899999999999999999999999999999999976 46799999


Q ss_pred             ECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          160 YNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       160 ~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      ++|+++..   ..++.++|++|++.+++ .|++||+                                          +.
T Consensus        61 ~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~   97 (178)
T cd03247          61 LDGVPVSDLEKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GR   97 (178)
T ss_pred             ECCEEHHHHHHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cc
Confidence            99997742   34678999999998886 6999886                                          13


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      .||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|++++ +++|||++||++. .+ ..+|++++|++|++
T Consensus        98 ~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~-~~-~~~d~~~~l~~g~i  174 (178)
T cd03247          98 RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLT-GI-EHMDKILFLENGKI  174 (178)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH-HH-HhCCEEEEEECCEE
Confidence            699999999999999999999999999999999999999999999996 4899999999975 45 57999999999999


Q ss_pred             EEec
Q 005545          317 IYSG  320 (691)
Q Consensus       317 v~~G  320 (691)
                      ++.|
T Consensus       175 ~~~~  178 (178)
T cd03247         175 IMQG  178 (178)
T ss_pred             EecC
Confidence            8764

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=100.00  E-value=3.8e-39  Score=371.37  Aligned_cols=215  Identities=28%  Similarity=0.457  Sum_probs=181.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++|+|+..                   ++.+|+|+|+++++||.++|+||||||||||+++|+|.+ +|.+|+|
T Consensus       313 ~I~~~~v~~~y~~~-------------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~-~p~~G~i  372 (569)
T PRK10789        313 ELDVNIRQFTYPQT-------------------DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHF-DVSEGDI  372 (569)
T ss_pred             cEEEEEEEEECCCC-------------------CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCEE
Confidence            58999999999731                   135899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~  227 (691)
                      .+||+++..    .+++.++||+|++.+|+. |++||+.++.    + ..+.++    ++++++..+       +++..+
T Consensus       373 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~~----~~~~~~~~~l~~~i~~lp~gl~  442 (569)
T PRK10789        373 RFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-DATQQE----IEHVARLASVHDDILRLPQGYD  442 (569)
T ss_pred             EECCEEHhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCcCccc
Confidence            999998753    567889999999999974 9999998642    1 223332    333344433       345668


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+. ...||||||||++|||||+++|++|+|||||++||+.++..+.+.|+++. +|+|+|+++|+++.  .+.+|+
T Consensus       443 t~~~~~-g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~--~~~~d~  518 (569)
T PRK10789        443 TEVGER-GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA--LTEASE  518 (569)
T ss_pred             ceecCC-CCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH--HHcCCE
Confidence            888763 46799999999999999999999999999999999999999999999986 58999999999743  477999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++.+
T Consensus       519 i~~l~~G~i~~~g~~~~l~~  538 (569)
T PRK10789        519 ILVMQHGHIAQRGNHDQLAQ  538 (569)
T ss_pred             EEEEeCCEEEEecCHHHHHH
Confidence            99999999999999998864

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-38  Score=350.24  Aligned_cols=198  Identities=25%  Similarity=0.332  Sum_probs=169.8

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      +.+|+|+||+|++||+++|+|||||||||||++|+|++ ++.+|+|.++|.+.         ++.+...+.+.+||+||+
T Consensus        37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl-~P~sGeI~I~G~~~---------~i~~~~~l~~~lTV~EnL  106 (549)
T PRK13545         37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVT-MPNKGTVDIKGSAA---------LIAISSGLNGQLTGIENI  106 (549)
T ss_pred             ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCC-CCCceEEEECCEee---------eEEeccccCCCCcHHHHH
Confidence            46999999999999999999999999999999999977 47799999999752         122344566779999999


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT  272 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~  272 (691)
                      .+.....   ..+.++..++++++++.++|.+..++.+     +.||||||||++|||||+.+|++|||||||+|||+.+
T Consensus       107 ~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~-----~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~s  178 (549)
T PRK13545        107 ELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPV-----KTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTF  178 (549)
T ss_pred             Hhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCc-----ccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence            8754322   2334455567788999999988777665     4699999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHh
Q 005545          273 AQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF  329 (691)
Q Consensus       273 ~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f  329 (691)
                      +..+++.|++++++|+|||++||++. .+.++||++++|++|++++.|+++++...|
T Consensus       179 r~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~~~  234 (549)
T PRK13545        179 TKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVDHY  234 (549)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHhhH
Confidence            99999999999878999999999964 578899999999999999999998886543

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=100.00  E-value=1.1e-38  Score=331.96  Aligned_cols=215  Identities=25%  Similarity=0.342  Sum_probs=171.9

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      -.|+++|++++|+..                   .+.+|+|+||++++||+++|+|+||||||||+++|+|++ ++.+|+
T Consensus        18 ~~i~~~~l~~~~~~~-------------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~   77 (257)
T cd03288          18 GEIKIHDLCVRYENN-------------------LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMV-DIFDGK   77 (257)
T ss_pred             ceEEEEEEEEEeCCC-------------------CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHccc-CCCCCe
Confidence            359999999999621                   135899999999999999999999999999999999977 577999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------c
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------R  226 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~  226 (691)
                      |.++|+++..    ..++.++|++|++.+++ .|++||+....      .....    .+.+.++.+++.+.       .
T Consensus        78 i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~----~~~~~l~~~~l~~~~~~~~~~l  146 (257)
T cd03288          78 IVIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDD----RLWEALEIAQLKNMVKSLPGGL  146 (257)
T ss_pred             EEECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHH----HHHHHHHHhCcHHHHhhccccc
Confidence            9999998753    35678999999998886 59999975321      11111    12223333333221       1


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.++ ...+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++.+ +.|||++||++.. +. .||
T Consensus       147 ~~~~~-~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~-~~d  222 (257)
T cd03288         147 DAVVT-EGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFA-DRTVVTIAHRVST-IL-DAD  222 (257)
T ss_pred             CcEec-cCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcC-CCEEEEEecChHH-HH-hCC
Confidence            22222 23467999999999999999999999999999999999999999999999754 8999999999764 54 499


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++++|++|++++.|+++++.+
T Consensus       223 ri~~l~~G~i~~~g~~~~~~~  243 (257)
T cd03288         223 LVLVLSRGILVECDTPENLLA  243 (257)
T ss_pred             EEEEEECCEEEEeCCHHHHHh
Confidence            999999999999999988754

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=100.00  E-value=6.9e-39  Score=370.16  Aligned_cols=216  Identities=30%  Similarity=0.436  Sum_probs=179.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                    +.+|+|+|+++++||.+||+||||||||||+++|+|.. ++.+|+|
T Consensus       334 ~i~~~~v~~~y~~~--------------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~i  392 (585)
T TIGR01192       334 AVEFRHITFEFANS--------------------SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVY-DPTVGQI  392 (585)
T ss_pred             eEEEEEEEEECCCC--------------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCC-CCCCCEE
Confidence            59999999999621                    24899999999999999999999999999999999977 5789999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHH-----HHHHcCCCcccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-----VIMELGLTRCRNSV  229 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~-----~l~~lgL~~~~~~~  229 (691)
                      .+||.++.+    .+++.++||+|++.+++ .|++||+.++.    + ..+.++..+..+.     .+.  .+.+..++.
T Consensus       393 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~~a~~~~~~~~~i~--~l~~g~~t~  464 (585)
T TIGR01192       393 LIDGIDINTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVYEAAKAAAAHDFIL--KRSNGYDTL  464 (585)
T ss_pred             EECCEEhhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hccccccch
Confidence            999998753    46789999999999886 69999998752    1 2233332222211     121  234455777


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +|+ ....||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++. +++|+|++||+++ .+ +.+|+++
T Consensus       465 ~~~-~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~-~~-~~~d~i~  540 (585)
T TIGR01192       465 VGE-RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLS-TV-RNADLVL  540 (585)
T ss_pred             hcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChH-HH-HcCCEEE
Confidence            765 356799999999999999999999999999999999999999999999885 4899999999974 34 6799999


Q ss_pred             EecCCeEEEecCHhHHHH
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++++.|+.+++.+
T Consensus       541 ~l~~G~i~~~g~~~~l~~  558 (585)
T TIGR01192       541 FLDQGRLIEKGSFQELIQ  558 (585)
T ss_pred             EEECCEEEEECCHHHHHH
Confidence            999999999999998865

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=100.00  E-value=4.9e-39  Score=371.05  Aligned_cols=217  Identities=30%  Similarity=0.515  Sum_probs=182.2

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+|+|+...                  ++.+|+|+|++++|||.++|+|+||||||||+|+|+|++ ++.+|+
T Consensus       336 ~~i~~~~v~f~y~~~~------------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~-~p~~G~  396 (576)
T TIGR02204       336 GEIEFEQVNFAYPARP------------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFY-DPQSGR  396 (576)
T ss_pred             ceEEEEEEEEECCCCC------------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhcc-CCCCCE
Confidence            3699999999997321                  135899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Cccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCR  226 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~  226 (691)
                      |.+||.++++    .+++.++|++|++.+|+ .|++|||.++.    | ..+.    +++.++++..|+       ++..
T Consensus       397 I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~-~Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl  466 (576)
T TIGR02204       397 ILLDGVDLRQLDPAELRARMALVPQDPVLFA-ASVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGY  466 (576)
T ss_pred             EEECCEEHHhcCHHHHHHhceEEccCCcccc-ccHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCC
Confidence            9999998853    46788999999999996 59999998742    1 1222    234455565554       3345


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.+|+ ..+.||||||||++||||++.+|++|+||||||+||+.+++.+.+.|+++.+ ++|+|++||+++  ..+.+|
T Consensus       467 ~t~i~~-~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~-~~t~IiitH~~~--~~~~~d  542 (576)
T TIGR02204       467 DTYLGE-RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK-GRTTLIIAHRLA--TVLKAD  542 (576)
T ss_pred             CceeCC-CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCC
Confidence            777765 3467999999999999999999999999999999999999999999999864 799999999974  457899


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++++|++|++++.|+++++.+
T Consensus       543 ~vi~l~~g~~~~~g~~~~l~~  563 (576)
T TIGR02204       543 RIVVMDQGRIVAQGTHAELIA  563 (576)
T ss_pred             EEEEEECCEEEeeecHHHHHH
Confidence            999999999999999988754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=100.00  E-value=1.3e-38  Score=324.79  Aligned_cols=197  Identities=30%  Similarity=0.439  Sum_probs=165.3

Q ss_pred             EEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCC--CCCCHHHHHHHHHhh
Q 005545          121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLY--PHLTVLETLSYAALL  198 (691)
Q Consensus       121 ~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~--~~lTV~E~l~~~~~~  198 (691)
                      |++++||+++|+|+||||||||+++|+|+. ++.+|+|.++|+++.. .++.++|++|++.++  ..+|+.||+.++...
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~   78 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLI-PPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTG   78 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhcccc
Confidence            468899999999999999999999999976 4679999999987643 456799999998764  348999999875321


Q ss_pred             cCC-CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005545          199 RLP-KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV  277 (691)
Q Consensus       199 ~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~  277 (691)
                      ... ......+..++++++++.+++.+..++.+     ++||||||||++|||+|+.+|++|++||||+|||+.++..+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~  153 (223)
T TIGR03771        79 HIGWLRRPCVADFAAVRDALRRVGLTELADRPV-----GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLT  153 (223)
T ss_pred             ccccccCCcHHHHHHHHHHHHHhCCchhhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            100 00112233456888999999987777665     469999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       278 ~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      +.|++++++|+|+|++||++. ++.+.||+++++ +|++++.|+.+++.
T Consensus       154 ~~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~  200 (223)
T TIGR03771       154 ELFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ  200 (223)
T ss_pred             HHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence            999999877999999999964 578899999999 89999999988764

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=100.00  E-value=1.3e-38  Score=361.54  Aligned_cols=204  Identities=25%  Similarity=0.417  Sum_probs=174.1

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL  186 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l  186 (691)
                      +|+|+||+|++||+++|+||||||||||+|+|+|++ ++++|+|.++|+++..     ..++.+|||+|++   .+++.+
T Consensus       267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~  345 (501)
T PRK10762        267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGAL-PRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM  345 (501)
T ss_pred             CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCC-CCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence            699999999999999999999999999999999977 4679999999988742     2356799999996   578899


Q ss_pred             CHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEe
Q 005545          187 TVLETLSYAALLRLP---KKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLD  262 (691)
Q Consensus       187 TV~E~l~~~~~~~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD  262 (691)
                      ||.||+.+.......   .....++..++++++++.+||. +..++.++     .|||||||||+||++|+.+|++||||
T Consensus       346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLD  420 (501)
T PRK10762        346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILD  420 (501)
T ss_pred             cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence            999999875321100   0122334456788999999995 56676664     69999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       263 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      |||+|||+.++..+.++|++++++|+|||++|||+. .+.++||++++|++|++++.|+++++
T Consensus       421 EPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~  482 (501)
T PRK10762        421 EPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA  482 (501)
T ss_pred             CCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence            999999999999999999999888999999999964 68899999999999999999987665

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=100.00  E-value=3.1e-38  Score=317.97  Aligned_cols=198  Identities=26%  Similarity=0.368  Sum_probs=163.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++++|+..                   .+.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|
T Consensus         6 ~l~~~~l~~~~~~~-------------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~-~~~~G~i   65 (207)
T cd03369           6 EIEVENLSVRYAPD-------------------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFL-EAEEGKI   65 (207)
T ss_pred             eEEEEEEEEEeCCC-------------------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhccc-CCCCCeE
Confidence            58999999998621                   125899999999999999999999999999999999976 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      .++|+++..    ..++.++|++|++.+++ .||+||+.+..      ....+    .+.+.++   +    +.     .
T Consensus        66 ~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~~----~~~~~l~---~----~~-----~  122 (207)
T cd03369          66 EIDGIDISTIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSDE----EIYGALR---V----SE-----G  122 (207)
T ss_pred             EECCEEhHHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCHH----HHHHHhh---c----cC-----C
Confidence            999998742    34678999999998886 59999996421      11221    2333333   2    22     3


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      ++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++. .+. .+|++++|++|
T Consensus       123 ~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~-~~~-~~d~v~~l~~g  199 (207)
T cd03369         123 GLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLR-TII-DYDKILVMDAG  199 (207)
T ss_pred             CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHH-HHh-hCCEEEEEECC
Confidence            35799999999999999999999999999999999999999999999985 4899999999975 454 49999999999


Q ss_pred             eEEEecCH
Q 005545          315 SPIYSGRA  322 (691)
Q Consensus       315 ~iv~~G~~  322 (691)
                      +++..|++
T Consensus       200 ~i~~~g~~  207 (207)
T cd03369         200 EVKEYDHP  207 (207)
T ss_pred             EEEecCCC
Confidence            99988753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.2e-40  Score=347.82  Aligned_cols=220  Identities=35%  Similarity=0.528  Sum_probs=187.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      -.|+|+||+|.|+.                    ++++|+||||++.||+.+||+||||+||||++|+|.... ...+|.
T Consensus       536 G~i~fsnvtF~Y~p--------------------~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRff-dv~sGs  594 (790)
T KOG0056|consen  536 GKIEFSNVTFAYDP--------------------GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFF-DVNSGS  594 (790)
T ss_pred             CeEEEEEeEEecCC--------------------CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHh-hccCce
Confidence            36999999999984                    357999999999999999999999999999999999765 466999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHH--HHHH-HHcCCCccccccc
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA--EMVI-MELGLTRCRNSVV  230 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v--~~~l-~~lgL~~~~~~~v  230 (691)
                      |.+||+++..    .+|+.||.||||..+|. -|+..|+.|+.    | +.+.++..+.+  .++- +.++.++..+|+|
T Consensus       595 I~iDgqdIrnvt~~SLRs~IGVVPQDtvLFN-dTI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~V  668 (790)
T KOG0056|consen  595 ITIDGQDIRNVTQSSLRSSIGVVPQDTVLFN-DTILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRV  668 (790)
T ss_pred             EEEcCchHHHHHHHHHHHhcCcccCcceeec-ceeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhh
Confidence            9999999964    68999999999999995 59999999863    2 22344433322  2222 3367899999999


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                      |+... .|||||||||+|||+++++|.+++|||.||+||..+..+|...|.+++. ++|-|++.|..+. + -.+|.|++
T Consensus       669 GERGL-kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ILv  744 (790)
T KOG0056|consen  669 GERGL-KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADLILV  744 (790)
T ss_pred             hhccc-ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccEEEE
Confidence            97332 3899999999999999999999999999999999999999999999987 6899999999765 3 57999999


Q ss_pred             ecCCeEEEecCHhHHHHH
Q 005545          311 LSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~~  328 (691)
                      +++|+|++.|.++|++..
T Consensus       745 i~~G~IvErG~HeeLl~r  762 (790)
T KOG0056|consen  745 ISNGRIVERGRHEELLKR  762 (790)
T ss_pred             EeCCeEeecCcHHHHHhc
Confidence            999999999999999763

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=100.00  E-value=1.1e-38  Score=362.14  Aligned_cols=204  Identities=22%  Similarity=0.370  Sum_probs=173.9

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL  186 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l  186 (691)
                      +++|+|++|++||+++|+||||||||||+|+|+|+. ++.+|+|.++|+++..     ..++.++|++|++   .+++.+
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~-~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~  346 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGAT-RRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH  346 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCC-cCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence            799999999999999999999999999999999977 4679999999988742     2356899999996   488899


Q ss_pred             CHHHHHHHHHhhcC-CCC--CCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEe
Q 005545          187 TVLETLSYAALLRL-PKK--LTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLD  262 (691)
Q Consensus       187 TV~E~l~~~~~~~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD  262 (691)
                      ||.||+.+...... +..  ....+.++.++++++.+++. +..++.++     .|||||||||+||++|+.+|++||||
T Consensus       347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLD  421 (501)
T PRK11288        347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLD  421 (501)
T ss_pred             CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEc
Confidence            99999986532110 001  12233345688999999994 66777765     69999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       263 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      |||+|||+.++.+++++|++++++|.|||++|||+ .++.++||++++|++|++++.|.++++
T Consensus       422 EPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~-~~~~~~~d~i~~l~~g~i~~~~~~~~~  483 (501)
T PRK11288        422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDL-PEVLGVADRIVVMREGRIAGELAREQA  483 (501)
T ss_pred             CCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHhhCCEEEEEECCEEEEEEccccC
Confidence            99999999999999999999998899999999996 468899999999999999999977653

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.6e-38  Score=310.14  Aligned_cols=233  Identities=30%  Similarity=0.408  Sum_probs=202.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-CCCce
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSG  156 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-~~~~G  156 (691)
                      .+|+++||.+++..                    +++||++||++|++||+.+||||||||||||.++|+|.-. ..++|
T Consensus         2 ~~L~I~dLhv~v~~--------------------~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G   61 (251)
T COG0396           2 MMLEIKDLHVEVEG--------------------KKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG   61 (251)
T ss_pred             ceeEEeeeEEEecC--------------------chhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc
Confidence            46899999999972                    1479999999999999999999999999999999999642 35799


Q ss_pred             EEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccc
Q 005545          157 KITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVV  230 (691)
Q Consensus       157 ~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v  230 (691)
                      +|+++|+++..     ..|+.+..-+|.|.=+|..|+.+.|..+...+........+..+++++.++.+++.+ ..++.+
T Consensus        62 ~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~v  141 (251)
T COG0396          62 EILFDGEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYV  141 (251)
T ss_pred             eEEECCcccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhccc
Confidence            99999999853     456789999999999999999999987765432221113456678899999999987 666666


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC--CEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF--DKV  308 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~--D~v  308 (691)
                      .    .|+|||||||..|+..++.+|++.+||||-||||..+-+.+.+.++++++.|.+++++||..  ++.++.  |+|
T Consensus       142 N----~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~--rll~~i~pD~v  215 (251)
T COG0396         142 N----EGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ--RLLDYIKPDKV  215 (251)
T ss_pred             C----CCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHhhcCCCEE
Confidence            5    47999999999999999999999999999999999999999999999999999999999994  566766  999


Q ss_pred             EEecCCeEEEecCHhHHHHHhhhcCCCCC
Q 005545          309 VVLSEGSPIYSGRAAQVMDYFGSIGYVPG  337 (691)
Q Consensus       309 ~~L~~G~iv~~G~~~~~~~~f~~~g~~~~  337 (691)
                      .+|.+|+|+..|.+ ++.++++.-||.|-
T Consensus       216 hvl~~GrIv~sG~~-el~~~le~~gy~~~  243 (251)
T COG0396         216 HVLYDGRIVKSGDP-ELAEELEEKGYDWL  243 (251)
T ss_pred             EEEECCEEEecCCH-HHHHHHHHhchHHh
Confidence            99999999999999 89999999999654

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=100.00  E-value=1.8e-38  Score=313.21  Aligned_cols=175  Identities=37%  Similarity=0.610  Sum_probs=151.0

Q ss_pred             EEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEE
Q 005545           81 KFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY  160 (691)
Q Consensus        81 ~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~  160 (691)
                      +++||+++|+.                     +.+|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.+
T Consensus         1 ~~~~l~~~~~~---------------------~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~-~~~~G~v~~   58 (180)
T cd03214           1 EVENLSVGYGG---------------------RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL-KPSSGEILL   58 (180)
T ss_pred             CeeEEEEEECC---------------------eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEEEE
Confidence            46888888851                     35899999999999999999999999999999999976 578999999


Q ss_pred             CCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          161 NGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       161 ~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      +|+++..    ..++.++|++|                                     +++.+||.+..++.+     +
T Consensus        59 ~g~~~~~~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~   96 (180)
T cd03214          59 DGKDLASLSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----N   96 (180)
T ss_pred             CCEECCcCCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----c
Confidence            9998742    23456788887                                     556667765555444     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      .||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|+++|++. .+.+++|++++|++|+
T Consensus        97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~  175 (180)
T cd03214          97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGR  175 (180)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence            69999999999999999999999999999999999999999999999876 899999999965 5678999999999999


Q ss_pred             EEEec
Q 005545          316 PIYSG  320 (691)
Q Consensus       316 iv~~G  320 (691)
                      +++.|
T Consensus       176 i~~~~  180 (180)
T cd03214         176 IVAQG  180 (180)
T ss_pred             EEecC
Confidence            98754

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=100.00  E-value=2.9e-38  Score=359.49  Aligned_cols=204  Identities=23%  Similarity=0.328  Sum_probs=171.6

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL  186 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l  186 (691)
                      +|+|+||++++||++||+||||||||||+|+|+|++ ++.+|+|.++|+++..     ..++.++|++|++   .+++.+
T Consensus       278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~-~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~  356 (510)
T PRK15439        278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR-PARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA  356 (510)
T ss_pred             CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCC-CCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC
Confidence            589999999999999999999999999999999977 4679999999998743     1345799999984   488889


Q ss_pred             CHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005545          187 TVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT  265 (691)
Q Consensus       187 TV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt  265 (691)
                      |+.||+......+.+........+++++++++.+||. +..+++++     .|||||||||+||++|+.+|++|||||||
T Consensus       357 t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt  431 (510)
T PRK15439        357 PLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPT  431 (510)
T ss_pred             cHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCC
Confidence            9999986421111111111222345688999999997 66777664     69999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      +|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|.++++
T Consensus       432 ~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~  490 (510)
T PRK15439        432 RGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI  490 (510)
T ss_pred             cCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence            999999999999999999888999999999964 68899999999999999998877654

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4e-39  Score=324.71  Aligned_cols=195  Identities=33%  Similarity=0.521  Sum_probs=174.1

Q ss_pred             eceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCCCCCH
Q 005545          117 NGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTV  188 (691)
Q Consensus       117 ~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~~lTV  188 (691)
                      =++++..+.-.++||-|+||||||||+|+|+|+. .|++|.|.+||.-+.+        ..+|+|||||||-.+||++||
T Consensus        15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~-rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tV   93 (352)
T COG4148          15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLT-RPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTV   93 (352)
T ss_pred             EEEeccCCCCceEEEecCCCCChhhHHHHHhccC-CccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEE
Confidence            3678888776799999999999999999999987 4789999999986632        357899999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005545          189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL  268 (691)
Q Consensus       189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL  268 (691)
                      +.||.|+...      .   .....+++++.+|+++..+++..     .|||||||||+|+|||++.|++|++|||.++|
T Consensus        94 rgNL~YG~~~------~---~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL  159 (352)
T COG4148          94 RGNLRYGMWK------S---MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLASL  159 (352)
T ss_pred             ecchhhhhcc------c---chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence            9999997531      1   23457789999999999988764     69999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          269 DSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       269 D~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |-..+.+++-.|++|+++ +..|+.+||.+ .++.+++|+|++|++|++...|+.+++.+
T Consensus       160 D~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~g~~e~v~~  218 (352)
T COG4148         160 DLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKASGPLEEVWG  218 (352)
T ss_pred             ccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence            999999999999999986 78999999996 57899999999999999999999999864

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=100.00  E-value=5e-38  Score=337.78  Aligned_cols=187  Identities=29%  Similarity=0.489  Sum_probs=164.8

Q ss_pred             EEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH
Q 005545          131 MLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE  208 (691)
Q Consensus       131 liGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~  208 (691)
                      |+||||||||||||+|+|+. ++.+|+|.++|+++..  ..++.++|++|++.+++++||+||+.|+...+   ...+.+
T Consensus         1 l~G~nGsGKSTLl~~iaGl~-~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~   76 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFE-QPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAE   76 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCC-CCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHH
Confidence            68999999999999999977 5779999999998753  34568999999999999999999999875432   234445


Q ss_pred             HHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C
Q 005545          209 KIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G  287 (691)
Q Consensus       209 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g  287 (691)
                      ..++++++++.+||.+..++.+     +.|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++ |
T Consensus        77 ~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g  151 (325)
T TIGR01187        77 IKPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLG  151 (325)
T ss_pred             HHHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcC
Confidence            5667899999999988777665     479999999999999999999999999999999999999999999999865 8


Q ss_pred             cEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       288 ~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +|+|++||++. ++.++||++++|++|+++..|+++++.+
T Consensus       152 ~tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~~  190 (325)
T TIGR01187       152 ITFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIYE  190 (325)
T ss_pred             CEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence            99999999964 6789999999999999999999998854

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=100.00  E-value=5.5e-38  Score=338.96  Aligned_cols=216  Identities=29%  Similarity=0.391  Sum_probs=192.8

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++|+++.|+                     ...+++|||+++++||+.||+|.||||||||+++|.|.+ .|++|+
T Consensus         3 ~~l~~~~itK~f~---------------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~-~P~~Ge   60 (501)
T COG3845           3 PALEMRGITKRFP---------------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLY-QPDSGE   60 (501)
T ss_pred             ceEEEeccEEEcC---------------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcc-cCCcce
Confidence            4588999998887                     246899999999999999999999999999999999977 578999


Q ss_pred             EEECCEeCC-----hhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          158 ITYNGRQFS-----SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       158 I~~~G~~~~-----~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      |.++|+++.     +..+..||+|.|++.|.|++||.||+..+..-........++.+++++++.++.||+-..|.+++ 
T Consensus        61 I~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-  139 (501)
T COG3845          61 IRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-  139 (501)
T ss_pred             EEECCEEeccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-
Confidence            999999874     24677999999999999999999999987643222244667778899999999999988888886 


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                          .||-||||||.|-++|..+|++|||||||+-|-|....+++++|++|+++|+|||++||-. .++.++|||+.+|.
T Consensus       140 ----dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL-~Ev~~iaDrvTVLR  214 (501)
T COG3845         140 ----DLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKL-KEVMAIADRVTVLR  214 (501)
T ss_pred             ----cCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccH-HHHHHhhCeeEEEe
Confidence                4999999999999999999999999999999999999999999999999999999999996 57999999999999


Q ss_pred             CCeEEEecC
Q 005545          313 EGSPIYSGR  321 (691)
Q Consensus       313 ~G~iv~~G~  321 (691)
                      +|+++..-+
T Consensus       215 ~Gkvvgt~~  223 (501)
T COG3845         215 RGKVVGTVD  223 (501)
T ss_pred             CCeEEeeec
Confidence            999876544

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=100.00  E-value=8.8e-38  Score=305.71  Aligned_cols=167  Identities=40%  Similarity=0.667  Sum_probs=147.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|...                   +..+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 l~~~~l~~~~~~~-------------------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~-~~~~G~i~   60 (171)
T cd03228           1 IEFKNVSFSYPGR-------------------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY-DPTSGEIL   60 (171)
T ss_pred             CEEEEEEEEcCCC-------------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC-CCCCCEEE
Confidence            4688999988621                   125899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          160 YNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       160 ~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      ++|+++..    ..++.++|++|++.+++ .|+.||+                                           
T Consensus        61 ~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l-------------------------------------------   96 (171)
T cd03228          61 IDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIRENI-------------------------------------------   96 (171)
T ss_pred             ECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHHHHh-------------------------------------------
Confidence            99998743    34568999999998776 5998886                                           


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                        |||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.. ||++++|++|+
T Consensus        97 --LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~  171 (171)
T cd03228          97 --LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR  171 (171)
T ss_pred             --hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence              799999999999999999999999999999999999999999999965 799999999975 4655 99999999885

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=100.00  E-value=2e-38  Score=362.42  Aligned_cols=187  Identities=36%  Similarity=0.566  Sum_probs=158.1

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+|+||+|+|+..                    +.+|+|+|+++++||.+||+||||||||||+|+|+|.. +|.+|+
T Consensus       333 ~~I~~~~vsf~Y~~~--------------------~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~-~p~~G~  391 (529)
T TIGR02868       333 PTLELRDLSFGYPGS--------------------PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLL-DPLQGE  391 (529)
T ss_pred             ceEEEEEEEEecCCC--------------------CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcE
Confidence            359999999999621                    24899999999999999999999999999999999977 578999


Q ss_pred             EEECCEeCCh---hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          158 ITYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       158 I~~~G~~~~~---~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      |.+||+++.+   .+|+.++||+|++.+|+. |++|||.++.    + ..+++    ++.++++..++       ++..|
T Consensus       392 I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~e----~i~~al~~a~l~~~i~~lp~Gld  461 (529)
T TIGR02868       392 VTLDGVSVSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATDE----ELWAALERVGLADWLRSLPDGLD  461 (529)
T ss_pred             EEECCEEhhhHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CCCHH----HHHHHHHHcCCHHHHHhCccccc
Confidence            9999998763   567899999999999965 9999998752    1 22333    34444554443       56679


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQP  297 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p  297 (691)
                      |.+|+ ....||||||||++|||||+.+|++|+||||||+||+.++..|.+.|+++. +++|+|+++|++
T Consensus       462 T~ige-~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl  529 (529)
T TIGR02868       462 TVLGE-GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL  529 (529)
T ss_pred             chhcc-ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence            99986 335699999999999999999999999999999999999999999999875 479999999984

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.5e-37  Score=310.30  Aligned_cols=191  Identities=21%  Similarity=0.288  Sum_probs=160.7

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|..                     +.+++ +|+++++||+++|+|+||||||||+++|+|+. ++.+|+|.
T Consensus         2 l~~~~l~~~~~~---------------------~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~-~~~~G~i~   58 (195)
T PRK13541          2 LSLHQLQFNIEQ---------------------KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIM-QPSSGNIY   58 (195)
T ss_pred             eEEEEeeEEECC---------------------cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC-CCCCcEEE
Confidence            789999999851                     23555 99999999999999999999999999999976 57799999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS  239 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS  239 (691)
                      ++|.++....++.++|++|++.+++.+||+||+.+.....   .     ..++++++++.+++.+..++.+     +.||
T Consensus        59 ~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS  125 (195)
T PRK13541         59 YKNCNINNIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLS  125 (195)
T ss_pred             ECCcccChhhhhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCC
Confidence            9999875433456999999988888899999998754321   1     1235678889999987766654     4699


Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEE
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++.+++|+|+|+++|++..  .+.+|-+
T Consensus       126 ~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~--i~~~~~~  192 (195)
T PRK13541        126 SGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS--IKSAQIL  192 (195)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc--cchhhee
Confidence            999999999999999999999999999999999999999999877778999999999753  3456654

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=9.1e-38  Score=392.37  Aligned_cols=214  Identities=25%  Similarity=0.343  Sum_probs=182.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+++|+..                   .+.+|+|+||+|+|||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus      1237 ~I~f~nVsf~Y~~~-------------------~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~-~p~~G~I 1296 (1622)
T PLN03130       1237 SIKFEDVVLRYRPE-------------------LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIV-ELERGRI 1296 (1622)
T ss_pred             cEEEEEEEEEeCCC-------------------CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCceE
Confidence            59999999999631                   135999999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||.++.+    .+|+++++||||+.+|.. |++|||.++.      ..++++    +.++++..++       ++..|
T Consensus      1297 ~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tdee----i~~Al~~a~l~~~I~~lp~GLd 1365 (1622)
T PLN03130       1297 LIDGCDISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDAD----LWESLERAHLKDVIRRNSLGLD 1365 (1622)
T ss_pred             EECCEecccCCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHHH----HHHHHHHcCcHHHHHhCccccC
Confidence            999999864    578999999999999975 9999997532      223333    3444444443       45678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++.  ...|||
T Consensus      1366 t~Vge-~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~-~~TvI~IAHRL~t--I~~~Dr 1441 (1622)
T PLN03130       1366 AEVSE-AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFK-SCTMLIIAHRLNT--IIDCDR 1441 (1622)
T ss_pred             ccccC-CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEeCChHH--HHhCCE
Confidence            88885 3456999999999999999999999999999999999999999999999854 7999999999754  456999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus      1442 IlVLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130       1442 ILVLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred             EEEEECCEEEEeCCHHHHHh
Confidence            99999999999999999975

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=100.00  E-value=2e-37  Score=301.01  Aligned_cols=157  Identities=33%  Similarity=0.514  Sum_probs=142.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|+.                     +++|+|+|+++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~-~~~~G~v~   58 (163)
T cd03216           1 LELRGITKRFGG---------------------VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY-KPDSGEIL   58 (163)
T ss_pred             CEEEEEEEEECC---------------------eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEEE
Confidence            478999999861                     35899999999999999999999999999999999977 57799999


Q ss_pred             ECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          160 YNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       160 ~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      ++|+++..     ..++.++|++|                                                        
T Consensus        59 ~~g~~~~~~~~~~~~~~~i~~~~q--------------------------------------------------------   82 (163)
T cd03216          59 VDGKEVSFASPRDARRAGIAMVYQ--------------------------------------------------------   82 (163)
T ss_pred             ECCEECCcCCHHHHHhcCeEEEEe--------------------------------------------------------
Confidence            99998753     23567899988                                                        


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                         ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|+++|++. ++.+.+|++++|++|
T Consensus        83 ---LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g  158 (163)
T cd03216          83 ---LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDG  158 (163)
T ss_pred             ---cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence               7999999999999999999999999999999999999999999999877999999999964 577899999999999


Q ss_pred             eEEE
Q 005545          315 SPIY  318 (691)
Q Consensus       315 ~iv~  318 (691)
                      ++++
T Consensus       159 ~i~~  162 (163)
T cd03216         159 RVVG  162 (163)
T ss_pred             EEEe
Confidence            9875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=100.00  E-value=1.2e-37  Score=313.13  Aligned_cols=196  Identities=30%  Similarity=0.477  Sum_probs=153.9

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|....                ...+.+|+|+|++|++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 l~~~~l~~~~~~~~----------------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~-~~~~G~i~   63 (204)
T cd03250           1 ISVEDASFTWDSGE----------------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGEL-EKLSGSVS   63 (204)
T ss_pred             CEEeEEEEecCCCC----------------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcC-CCCCCeEE
Confidence            47899999886210                00025999999999999999999999999999999999976 57899999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccccccC
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------RNSVVGG  232 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~  232 (691)
                      ++|         .++|++|++.++ ..|++||+.+...      ...+    ...+.++.+++.+.       .++... 
T Consensus        64 ~~g---------~i~~~~q~~~l~-~~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-  122 (204)
T cd03250          64 VPG---------SIAYVSQEPWIQ-NGTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-  122 (204)
T ss_pred             EcC---------EEEEEecCchhc-cCcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-
Confidence            998         599999999888 5799999987421      1111    12223333333221       122222 


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA-TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      ...+.||||||||++|||+|+.+|++++|||||+|||+.++..+.+ +++++.++|+|||++||++. .+.. +|++++|
T Consensus       123 ~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l  200 (204)
T cd03250         123 EKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVL  200 (204)
T ss_pred             CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEE
Confidence            2346799999999999999999999999999999999999999998 56777666899999999975 4555 9999999


Q ss_pred             cCCe
Q 005545          312 SEGS  315 (691)
Q Consensus       312 ~~G~  315 (691)
                      ++|+
T Consensus       201 ~~G~  204 (204)
T cd03250         201 DNGR  204 (204)
T ss_pred             eCCC
Confidence            9985

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=7.5e-38  Score=392.60  Aligned_cols=214  Identities=24%  Similarity=0.323  Sum_probs=182.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|+|+..                   .+.+|+|+|++|++||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus      1234 ~I~f~nVsf~Y~~~-------------------~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~-~p~~G~I 1293 (1495)
T PLN03232       1234 SIKFEDVHLRYRPG-------------------LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIV-ELEKGRI 1293 (1495)
T ss_pred             cEEEEEEEEEECCC-------------------CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCceE
Confidence            59999999999621                   135999999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||.++.+    .+|++++|||||+.+|+. |++|||.+..      ..+++    .+.++++..++       ++..|
T Consensus      1294 ~IdG~di~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLd 1362 (1495)
T PLN03232       1294 MIDDCDVAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLD 1362 (1495)
T ss_pred             EECCEEhhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCC
Confidence            999999864    578999999999999975 9999997531      22333    34444555444       45678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++.  ...||+
T Consensus      1363 t~v~e-~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~-~~TvI~IAHRl~t--i~~~Dr 1438 (1495)
T PLN03232       1363 AEVSE-GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFK-SCTMLVIAHRLNT--IIDCDK 1438 (1495)
T ss_pred             ceecC-CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEeCCHHH--HHhCCE
Confidence            88875 3456999999999999999999999999999999999999999999998754 7999999999753  456999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus      1439 IlVL~~G~ivE~Gt~~eLl~ 1458 (1495)
T PLN03232       1439 ILVLSSGQVLEYDSPQELLS 1458 (1495)
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999999964

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=100.00  E-value=2.1e-37  Score=314.40  Aligned_cols=188  Identities=23%  Similarity=0.420  Sum_probs=151.2

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh--------hccccEEEEccCCCCCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--------SLKRKTGFVTQDDVLYP  184 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~--------~~~~~igyv~Q~~~l~~  184 (691)
                      +.+|+|+||++++||+++|+|||||||||||++|+|+. .+.+|+|.++|+++..        ..++.++|++|++.++ 
T Consensus        14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~-~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~-   91 (218)
T cd03290          14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEM-QTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL-   91 (218)
T ss_pred             CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccC-CCCCCeEEECCcccccccccccchhhcceEEEEcCCCccc-
Confidence            35899999999999999999999999999999999977 4679999999987632        1346799999999887 


Q ss_pred             CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------ccccCCCCcccCHHHHHHHHHHHHHhhCCC
Q 005545          185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN-------SVVGGPLFRGISGGERKRVSIGQEMLVNPS  257 (691)
Q Consensus       185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSGGerqRv~IA~aL~~~P~  257 (691)
                      ..|++||+.+...      ...+    ..+++++.++|.+..+       +..+ ..+..|||||||||+|||+|+.+|+
T Consensus        92 ~~t~~~nl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LS~G~~qrv~laral~~~p~  160 (218)
T cd03290          92 NATVEENITFGSP------FNKQ----RYKAVTDACSLQPDIDLLPFGDQTEIG-ERGINLSGGQRQRICVARALYQNTN  160 (218)
T ss_pred             cccHHHHHhhcCc------CCHH----HHHHHHHHhCcHHHHHhCcCccccCcc-cCCCcCCHHHHHHHHHHHHHhhCCC
Confidence            5799999976421      1111    2234455555543221       2122 2346799999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHH--HHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          258 CLLLDEPTSGLDSTTAQRIVA--TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       258 iLlLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +|||||||+|||+.++..+++  +++.++++|.|+|++||++. .+ ..+|++++|++|+
T Consensus       161 illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~-~~-~~~d~i~~l~~G~  218 (218)
T cd03290         161 IVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQ-YL-PHADWIIAMKDGS  218 (218)
T ss_pred             EEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChH-HH-hhCCEEEEecCCC
Confidence            999999999999999999998  77777667899999999975 35 5799999999884

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=100.00  E-value=4.6e-38  Score=359.55  Aligned_cols=199  Identities=33%  Similarity=0.510  Sum_probs=167.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                   ++.+|+|+|+++++||.+||+||||||||||+|+|+|+. ++.+|+|
T Consensus       320 ~i~~~~v~f~y~~~-------------------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~-~~~~G~I  379 (529)
T TIGR02857       320 SLEFSGLSVAYPGR-------------------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFV-DPTEGSI  379 (529)
T ss_pred             eEEEEEEEEECCCC-------------------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCcEE
Confidence            59999999999731                   135899999999999999999999999999999999977 5779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||.++.+    .+|+.++||+|++.+|+ .|++||+.++..     ..+++    .+.++++..++       ++..|
T Consensus       380 ~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~Gld  449 (529)
T TIGR02857       380 AVNGVPLADADADSWRDQIAWVPQHPFLFA-GTIAENIRLARP-----DASDA----EIRRALERAGLDEFVAALPQGLD  449 (529)
T ss_pred             EECCEehhhCCHHHHHhheEEEcCCCcccC-cCHHHHHhccCC-----CCCHH----HHHHHHHHcCcHHHHHhCccccc
Confidence            999998853    57889999999999996 599999987531     12222    34455555554       34568


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |.+|+ ....||||||||++|||||+++|++++||||||+||+.+++.+.+.|+++. +++|+|+++|+++  ..+.||+
T Consensus       450 t~v~e-~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~--~~~~~d~  525 (529)
T TIGR02857       450 TLIGE-GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLA--LAERADR  525 (529)
T ss_pred             chhcc-ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHH--HHHhCCE
Confidence            88875 446699999999999999999999999999999999999999999999986 4799999999974  3578999


Q ss_pred             EEEe
Q 005545          308 VVVL  311 (691)
Q Consensus       308 v~~L  311 (691)
                      |++|
T Consensus       526 i~~l  529 (529)
T TIGR02857       526 IVVL  529 (529)
T ss_pred             EEeC
Confidence            9986

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-38  Score=299.23  Aligned_cols=193  Identities=27%  Similarity=0.446  Sum_probs=168.7

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCC
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLT  187 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lT  187 (691)
                      ...||+++||.+.+||..+|.||||||||||+|+++.+. ++++|++++.|++++.    .+|.+++|+.|.+.+|+. |
T Consensus        15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li-sp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-t   92 (223)
T COG4619          15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI-SPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-T   92 (223)
T ss_pred             CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc-CCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-c
Confidence            356999999999999999999999999999999999876 5789999999999863    688999999999999975 9


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg  267 (691)
                      |+||+.|...+|-.+.     ..++..+.|++++|.+..-++    .+..||||||||++|+|-|..-|+||+||||||+
T Consensus        93 VeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k----~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA  163 (223)
T COG4619          93 VEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTK----NITELSGGEKQRIALIRNLQFMPKILLLDEITSA  163 (223)
T ss_pred             hhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcc----hhhhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence            9999999877663221     234677899999998654322    2356999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          268 LDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      ||+.+++.|-++|.++. .+.+.++.+|||+. +..+.+||++-+..|++
T Consensus       164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~d-qa~rha~k~itl~~G~~  212 (223)
T COG4619         164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKD-QAIRHADKVITLQPGHA  212 (223)
T ss_pred             cChhhHHHHHHHHHHHhhhhceEEEEEecChH-HHhhhhheEEEeccCcc
Confidence            99999999999999987 46899999999975 56789999999999875

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=100.00  E-value=8.4e-37  Score=356.08  Aligned_cols=220  Identities=29%  Similarity=0.453  Sum_probs=190.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++++|+...                 +.+.+|+|+||++++||+++|+||||||||||+|+|+|+. ++.+|+|
T Consensus         4 ~l~~~nl~~~y~~~~-----------------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~-~~~~G~i   65 (648)
T PRK10535          4 LLELKDIRRSYPSGE-----------------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLD-KPTSGTY   65 (648)
T ss_pred             EEEEeeEEEEeCCCC-----------------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCeEE
Confidence            699999999996311                 1245899999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh----h----ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 005545          159 TYNGRQFSS----S----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       159 ~~~G~~~~~----~----~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      .+||+++..    .    .++.++|++|++.+++.+|+.||+.+.....   ....++..+++.++++.+||.+..++..
T Consensus        66 ~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~  142 (648)
T PRK10535         66 RVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQP  142 (648)
T ss_pred             EECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCc
Confidence            999998753    1    1468999999999999999999998764322   2234555667899999999988777665


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                           +.||||||||++|||+|+.+|++|+|||||+|||+.+++.+.+.|++++++|+|+|++||++. .+ +.||++++
T Consensus       143 -----~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~  215 (648)
T PRK10535        143 -----SQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIE  215 (648)
T ss_pred             -----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEE
Confidence                 469999999999999999999999999999999999999999999999877999999999965 34 57999999


Q ss_pred             ecCCeEEEecCHhHHH
Q 005545          311 LSEGSPIYSGRAAQVM  326 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~  326 (691)
                      |++|++++.|+.++..
T Consensus       216 l~~G~i~~~g~~~~~~  231 (648)
T PRK10535        216 IRDGEIVRNPPAQEKV  231 (648)
T ss_pred             EECCEEEeecCccccc
Confidence            9999999999998775

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=100.00  E-value=3.3e-37  Score=323.61  Aligned_cols=229  Identities=26%  Similarity=0.424  Sum_probs=197.4

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC----
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG----  152 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~----  152 (691)
                      ...|+.+||+..+....                 +...++++|||++++||.+||+|.||||||-..+.++|+++.    
T Consensus         4 ~~lL~v~nLsV~f~~~~-----------------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~   66 (534)
T COG4172           4 MPLLSIRNLSVAFHQEG-----------------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA   66 (534)
T ss_pred             CcceeeeccEEEEecCC-----------------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCccc
Confidence            35689999999997543                 246799999999999999999999999999999999998853    


Q ss_pred             CCceEEEECCEeCCh----hcc----ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC
Q 005545          153 KFSGKITYNGRQFSS----SLK----RKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL  222 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~----~~~----~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL  222 (691)
                      ..+|+|.|+|+++-.    .+|    .+|+++||+|.  |.|-.|+...+.-..++  .+++++++.++++.++|+.+|+
T Consensus        67 ~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~--Hrg~~~~~Ar~r~lelL~~VgI  144 (534)
T COG4172          67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRL--HRGLSRAAARARALELLELVGI  144 (534)
T ss_pred             CccceeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHH--HhcccHHHHHHHHHHHHHHcCC
Confidence            248999999998732    222    37999999985  88888998887765443  4577888889999999999999


Q ss_pred             CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHH
Q 005545          223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRL  301 (691)
Q Consensus       223 ~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i  301 (691)
                      .+.....  +.++.+|||||||||.||+||+.+|++||.||||++||...+.+|+++|++|+++ |.+++++|||. ..+
T Consensus       145 ~~p~~rl--~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iV  221 (534)
T COG4172         145 PEPEKRL--DAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIV  221 (534)
T ss_pred             Cchhhhh--hhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHH
Confidence            8654433  2466799999999999999999999999999999999999999999999999875 99999999996 468


Q ss_pred             HhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      .+++|||+||.+|++++.|..++++.
T Consensus       222 r~~ADrV~VM~~G~ivE~~~t~~lF~  247 (534)
T COG4172         222 RKFADRVYVMQHGEIVETGTTETLFA  247 (534)
T ss_pred             HHhhhhEEEEeccEEeecCcHHHHhh
Confidence            99999999999999999999998863

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=100.00  E-value=1.2e-37  Score=335.71  Aligned_cols=221  Identities=29%  Similarity=0.469  Sum_probs=188.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|.+++|++ .+..                  .++.+|+|+||.+.+||.+|||||||||||||.|+|.|.. +|.+|.|
T Consensus       334 ~L~Ve~l~~-~PPg------------------~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w-~p~~G~V  393 (580)
T COG4618         334 ALSVERLTA-APPG------------------QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIW-PPTSGSV  393 (580)
T ss_pred             eeeEeeeee-cCCC------------------CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHccc-ccCCCcE
Confidence            588999988 3311                  2367999999999999999999999999999999999976 5789999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHH-----HHHHHHHHHHHcCCCcccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE-----KIEQAEMVIMELGLTRCRNSV  229 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~  229 (691)
                      .+||.++..    .+-+.|||+|||-.||+. ||.|||.     |+.++.+.+.     +...+.|++-  .|++..||.
T Consensus       394 RLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIa-----Rf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~  465 (580)
T COG4618         394 RLDGADLRQWDREQLGRHIGYLPQDVELFDG-TIAENIA-----RFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTR  465 (580)
T ss_pred             EecchhhhcCCHHHhccccCcCcccceecCC-cHHHHHH-----hccccCCHHHHHHHHHHcChHHHHH--hCcCCccCc
Confidence            999998864    466799999999999986 9999995     2222333322     2223445443  568899999


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +|+ -...||||||||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+  +...+|+|+
T Consensus       466 iG~-~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkil  542 (580)
T COG4618         466 IGE-GGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKIL  542 (580)
T ss_pred             cCC-CCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceee
Confidence            996 34679999999999999999999999999999999999999999999999999999999999985  578999999


Q ss_pred             EecCCeEEEecCHhHHHHHhh
Q 005545          310 VLSEGSPIYSGRAAQVMDYFG  330 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~~f~  330 (691)
                      +|++|++-.+|+.+|++....
T Consensus       543 vl~~G~~~~FG~r~eVLa~~~  563 (580)
T COG4618         543 VLQDGRIAAFGPREEVLAKVL  563 (580)
T ss_pred             eecCChHHhcCCHHHHHHHhc
Confidence            999999999999999998754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.1e-37  Score=349.61  Aligned_cols=216  Identities=23%  Similarity=0.351  Sum_probs=176.5

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +..|+++||++.+                       +.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+|
T Consensus       248 ~~~i~~~~l~~~~-----------------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G  303 (491)
T PRK10982        248 EVILEVRNLTSLR-----------------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIR-EKSAG  303 (491)
T ss_pred             CcEEEEeCccccc-----------------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCC-cCCcc
Confidence            3468999988752                       13899999999999999999999999999999999977 46799


Q ss_pred             EEEECCEeCCh-----hccccEEEEccCC---CCCCCCCHHHHHHHHHh--hcCCCC-CCHHHHHHHHHHHHHHcCCC-c
Q 005545          157 KITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHLTVLETLSYAAL--LRLPKK-LTREEKIEQAEMVIMELGLT-R  224 (691)
Q Consensus       157 ~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~lTV~E~l~~~~~--~~~~~~-~~~~~~~~~v~~~l~~lgL~-~  224 (691)
                      +|.++|+++..     ..++.++|++|++   .+++.+|+.+|..+...  ...... ....+..+.++++++.+++. +
T Consensus       304 ~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~  383 (491)
T PRK10982        304 TITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP  383 (491)
T ss_pred             EEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCC
Confidence            99999988753     2356799999985   47888998877432210  000001 12233445778899999995 4


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~  304 (691)
                      ..++.+     ..|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|+|||++|||+. ++.++
T Consensus       384 ~~~~~~-----~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~  457 (491)
T PRK10982        384 GHRTQI-----GSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGI  457 (491)
T ss_pred             Cccccc-----ccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhh
Confidence            556655     469999999999999999999999999999999999999999999999888999999999964 57899


Q ss_pred             CCEEEEecCCeEEEecCH
Q 005545          305 FDKVVVLSEGSPIYSGRA  322 (691)
Q Consensus       305 ~D~v~~L~~G~iv~~G~~  322 (691)
                      ||++++|++|+++..++.
T Consensus       458 ~d~v~~l~~g~i~~~~~~  475 (491)
T PRK10982        458 TDRILVMSNGLVAGIVDT  475 (491)
T ss_pred             CCEEEEEECCEEEEEEcc
Confidence            999999999999976654

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=100.00  E-value=3.7e-37  Score=353.38  Aligned_cols=204  Identities=22%  Similarity=0.268  Sum_probs=169.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+.                    ++.+|+|+|+++++||.+||+||||||||||+++|+|.+ +|.+|+|
T Consensus       322 ~i~~~~v~f~y~~--------------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~-~~~~G~i  380 (547)
T PRK10522        322 TLELRNVTFAYQD--------------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLY-QPQSGEI  380 (547)
T ss_pred             eEEEEEEEEEeCC--------------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeEE
Confidence            6999999999972                    124899999999999999999999999999999999977 5789999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      .+||+++.+    .+++.++||+||+.+|+ .|++||   .      ..    ..++.+++.++.+++.+..+..-|...
T Consensus       381 ~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~  446 (547)
T PRK10522        381 LLDGKPVTAEQPEDYRKLFSAVFTDFHLFD-QLLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRIS  446 (547)
T ss_pred             EECCEECCCCCHHHHhhheEEEecChhHHH-Hhhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCC
Confidence            999999863    56789999999999886 477776   1      11    123456788889988754332111001


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ...||||||||++|||||+.+|++|+||||||+||+.++..+.+.|.++.+ .|+|+|+++|+++  ..+.+|++++|++
T Consensus       447 G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~  524 (547)
T PRK10522        447 NLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRN  524 (547)
T ss_pred             CCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEEC
Confidence            247999999999999999999999999999999999999999999987654 5899999999974  4678999999999


Q ss_pred             CeEEEe
Q 005545          314 GSPIYS  319 (691)
Q Consensus       314 G~iv~~  319 (691)
                      |++++.
T Consensus       525 G~i~e~  530 (547)
T PRK10522        525 GQLSEL  530 (547)
T ss_pred             CEEEEe
Confidence            999876

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=100.00  E-value=5.7e-37  Score=298.72  Aligned_cols=164  Identities=34%  Similarity=0.485  Sum_probs=143.7

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|++++|+.                    .+.+|+|+|+++++||+++|+||||||||||+++|+|++ ++.+|+|.
T Consensus         1 i~~~~~~~~~~~--------------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~-~~~~G~i~   59 (166)
T cd03223           1 IELENLSLATPD--------------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLW-PWGSGRIG   59 (166)
T ss_pred             CEEEEEEEEcCC--------------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCC-CCCCceEE
Confidence            468999998851                    135899999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS  239 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS  239 (691)
                      ++|.       +.++|++|++.++ ..||+||+.+.                                      ..+.||
T Consensus        60 ~~~~-------~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS   93 (166)
T cd03223          60 MPEG-------EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLS   93 (166)
T ss_pred             ECCC-------ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCC
Confidence            9873       6799999998765 57999998642                                      014699


Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      ||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++   ++|+|++||++. . .+.+|++++|++|-
T Consensus        94 ~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~~  164 (166)
T cd03223          94 GGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGEG  164 (166)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCCC
Confidence            99999999999999999999999999999999999999999987   589999999974 3 47999999998753

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=7.9e-37  Score=349.36  Aligned_cols=210  Identities=24%  Similarity=0.407  Sum_probs=174.3

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||||+|+|++ ++++|+|.
T Consensus         2 l~i~~ls~~~~~---------------------~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~-~p~~G~i~   59 (530)
T PRK15064          2 LSTANITMQFGA---------------------KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDL-EPSAGNVS   59 (530)
T ss_pred             EEEEEEEEEeCC---------------------cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEE
Confidence            789999999851                     35999999999999999999999999999999999977 46799999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-h-----------cCCCC-----------------CCHHHHH
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAAL-L-----------RLPKK-----------------LTREEKI  210 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~-~-----------~~~~~-----------------~~~~~~~  210 (691)
                      ++|.       +.+||++|++.+++.+||+|++.++.. .           ..+..                 ....+.+
T Consensus        60 ~~~~-------~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (530)
T PRK15064         60 LDPN-------ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAE  132 (530)
T ss_pred             ecCC-------CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHH
Confidence            9873       359999999999999999999986421 0           00000                 0001223


Q ss_pred             HHHHHHHHHcCCCccc-cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcE
Q 005545          211 EQAEMVIMELGLTRCR-NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT  289 (691)
Q Consensus       211 ~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~t  289 (691)
                      ++++++++.+||.+.. +..+     ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++   .|.|
T Consensus       133 ~~~~~~l~~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~t  204 (530)
T PRK15064        133 ARAGELLLGVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNST  204 (530)
T ss_pred             HHHHHHHHhCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCe
Confidence            5688899999997543 3333     46999999999999999999999999999999999999999999864   5899


Q ss_pred             EEEEeCCCchHHHhcCCEEEEecCCeE-EEecCHhHHHH
Q 005545          290 VITTIHQPSSRLYRMFDKVVVLSEGSP-IYSGRAAQVMD  327 (691)
Q Consensus       290 ii~~~H~p~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~~  327 (691)
                      ||++||++. .+.++||++++|++|++ ++.|++++..+
T Consensus       205 iiivsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  242 (530)
T PRK15064        205 MIIISHDRH-FLNSVCTHMADLDYGELRVYPGNYDEYMT  242 (530)
T ss_pred             EEEEeCCHH-HHHhhcceEEEEeCCEEEEecCCHHHHHH
Confidence            999999964 57899999999999999 48898887654

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=100.00  E-value=1.4e-36  Score=319.83  Aligned_cols=204  Identities=28%  Similarity=0.422  Sum_probs=163.4

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .+..|+++|+++. .                      +.+|+|+|++|++||+++|+||||||||||+++|+|++ ++.+
T Consensus        36 ~~~~l~i~nls~~-~----------------------~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~-~p~~   91 (282)
T cd03291          36 DDNNLFFSNLCLV-G----------------------APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGEL-EPSE   91 (282)
T ss_pred             CCCeEEEEEEEEe-c----------------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCC
Confidence            4456999999984 1                      24899999999999999999999999999999999987 5779


Q ss_pred             eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------ccc
Q 005545          156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-------RNS  228 (691)
Q Consensus       156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~  228 (691)
                      |+|.++|         .++|++|++.+++. ||+||+.+....      ...    ++.+.++.+++.+.       .++
T Consensus        92 G~I~i~g---------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~~----~~~~~l~~~~l~~~l~~~~~~~~~  151 (282)
T cd03291          92 GKIKHSG---------RISFSSQFSWIMPG-TIKENIIFGVSY------DEY----RYKSVVKACQLEEDITKFPEKDNT  151 (282)
T ss_pred             cEEEECC---------EEEEEeCccccccc-CHHHHhhccccc------CHH----HHHHHHHHhCCHHHHHhccccccc
Confidence            9999998         39999999988875 999999864211      111    12233333444321       222


Q ss_pred             cccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .++. ..+.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..||+
T Consensus       152 ~~~~-~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~  227 (282)
T cd03291         152 VLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADK  227 (282)
T ss_pred             eecC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCE
Confidence            3321 34579999999999999999999999999999999999999999865 5664 47899999999754 4 68999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +++|++|++++.|+++++..
T Consensus       228 i~~l~~G~i~~~g~~~~~~~  247 (282)
T cd03291         228 ILILHEGSSYFYGTFSELQS  247 (282)
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999988743

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=1.2e-36  Score=349.65  Aligned_cols=213  Identities=26%  Similarity=0.374  Sum_probs=176.1

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +++|+++||+++|..                    .+.+|+|+||+|++||+++|+|||||||||||++|+|.+ ++++|
T Consensus         4 ~~~l~i~~l~~~y~~--------------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~-~p~~G   62 (556)
T PRK11819          4 QYIYTMNRVSKVVPP--------------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFEG   62 (556)
T ss_pred             cEEEEEeeEEEEeCC--------------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCc
Confidence            467999999999851                    135999999999999999999999999999999999987 46799


Q ss_pred             EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh-hc------------CCCCCC------------------
Q 005545          157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAAL-LR------------LPKKLT------------------  205 (691)
Q Consensus       157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~-~~------------~~~~~~------------------  205 (691)
                      +|.+++       ...+|||+|++.+++.+||.||+.++.. .+            ......                  
T Consensus        63 ~i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (556)
T PRK11819         63 EARPAP-------GIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDA  135 (556)
T ss_pred             eEEecC-------CCEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHh
Confidence            999975       2469999999999999999999987531 00            000000                  


Q ss_pred             --HHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 005545          206 --REEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL  283 (691)
Q Consensus       206 --~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l  283 (691)
                        ..+..++++++++.+||.. .++.+     ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++
T Consensus       136 ~~~~~~~~~~~~~l~~~gl~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~  209 (556)
T PRK11819        136 ADAWDLDSQLEIAMDALRCPP-WDAKV-----TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY  209 (556)
T ss_pred             cCccchHHHHHHHHHhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC
Confidence              0012356788999999963 55555     469999999999999999999999999999999999999999999987


Q ss_pred             HhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHHH
Q 005545          284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVMD  327 (691)
Q Consensus       284 ~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~  327 (691)
                      .   .|||++||++ ..+.++||+|++|++|+++ +.|+.++..+
T Consensus       210 ~---~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~  250 (556)
T PRK11819        210 P---GTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE  250 (556)
T ss_pred             C---CeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHHHHH
Confidence            3   4999999996 4578899999999999986 8888776543

>PTZ00243 ABC transporter; Provisional

Probab=100.00  E-value=4.9e-37  Score=385.18  Aligned_cols=214  Identities=27%  Similarity=0.373  Sum_probs=182.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|+|+..                   ...+|+||||+|++||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus      1308 ~I~f~nVsf~Y~~~-------------------~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~-~p~~G~I 1367 (1560)
T PTZ00243       1308 SLVFEGVQMRYREG-------------------LPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMV-EVCGGEI 1367 (1560)
T ss_pred             eEEEEEEEEEeCCC-------------------CCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCcEE
Confidence            59999999999732                   134999999999999999999999999999999999977 4779999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      ++||.++.+    .+|+.++|||||+.+|+. ||+|||...      ...+.+    .+.++++..||       ++..|
T Consensus      1368 ~IDG~di~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sde----eI~~Al~~a~l~~~I~~lp~Gld 1436 (1560)
T PTZ00243       1368 RVNGREIGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASSA----EVWAALELVGLRERVASESEGID 1436 (1560)
T ss_pred             EECCEEcccCCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCHH----HHHHHHHHCCChHHHhhCccccc
Confidence            999999864    678999999999999975 999999532      122332    45556666655       34578


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVN-PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~-P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      +.+|+ ....||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++  ....||
T Consensus      1437 t~vge-~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~-~~TvI~IAHRl~--ti~~~D 1512 (1560)
T PTZ00243       1437 SRVLE-GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS-AYTVITIAHRLH--TVAQYD 1512 (1560)
T ss_pred             ccccC-CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC-CCEEEEEeccHH--HHHhCC
Confidence            88875 3456999999999999999996 899999999999999999999999998654 799999999974  357899


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++|++++.|+++++++
T Consensus      1513 rIlVLd~G~VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243       1513 KIIVMDHGAVAEMGSPRELVM 1533 (1560)
T ss_pred             EEEEEECCEEEEECCHHHHHh
Confidence            999999999999999999964

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=4e-37  Score=386.53  Aligned_cols=214  Identities=22%  Similarity=0.305  Sum_probs=182.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+++|+..                   ...+|+|+|++|++||.+||+|+||||||||+++|.|++ .+.+|+|
T Consensus      1284 ~I~f~nVsf~Y~~~-------------------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~-~~~~G~I 1343 (1522)
T TIGR00957      1284 RVEFRNYCLRYRED-------------------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRIN-ESAEGEI 1343 (1522)
T ss_pred             cEEEEEEEEEeCCC-------------------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCc-cCCCCeE
Confidence            59999999999732                   125999999999999999999999999999999999976 4679999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~  227 (691)
                      .+||.++.+    .+|+++++||||+.+|+. |++|||....      ..++++    +.++++..++       ++..|
T Consensus      1344 ~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sdee----i~~al~~a~l~~~I~~lp~GLd 1412 (1522)
T TIGR00957      1344 IIDGLNIAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDEE----VWWALELAHLKTFVSALPDKLD 1412 (1522)
T ss_pred             EECCEEccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHHH----HHHHHHHcCcHHHHhhCccCCC
Confidence            999999864    578999999999999976 9999996211      223333    4445555554       35678


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|+|+++|+++.  ...+||
T Consensus      1413 t~v~e-~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~-~~TvI~IAHRl~t--i~~~Dr 1488 (1522)
T TIGR00957      1413 HECAE-GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFE-DCTVLTIAHRLNT--IMDYTR 1488 (1522)
T ss_pred             ceecC-CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCE
Confidence            88875 3456999999999999999999999999999999999999999999998754 7999999999754  467999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus      1489 IlVld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957      1489 VIVLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred             EEEEECCEEEEECCHHHHHh
Confidence            99999999999999999975

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=100.00  E-value=4.7e-37  Score=348.05  Aligned_cols=216  Identities=22%  Similarity=0.334  Sum_probs=173.7

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...|+++||+++|+.                     +.+|+|+||++++||+++|+||||||||||+|+|+|..+++.+|
T Consensus       258 ~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G  316 (490)
T PRK10938        258 EPRIVLNNGVVSYND---------------------RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN  316 (490)
T ss_pred             CceEEEeceEEEECC---------------------eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC
Confidence            356999999999851                     34899999999999999999999999999999999965322599


Q ss_pred             EEEECCEeCCh-----hccccEEEEccCCCCCC--CCCHHHHHHHHHhh--cCCCCCCHHHHHHHHHHHHHHcCCCc-cc
Q 005545          157 KITYNGRQFSS-----SLKRKTGFVTQDDVLYP--HLTVLETLSYAALL--RLPKKLTREEKIEQAEMVIMELGLTR-CR  226 (691)
Q Consensus       157 ~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~--~lTV~E~l~~~~~~--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~  226 (691)
                      +|+++|+++..     ..++.++|++|++.++.  ..|+++++.++...  ....... .+.+++++++++.+||.+ ..
T Consensus       317 ~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~  395 (490)
T PRK10938        317 DLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTA  395 (490)
T ss_pred             eEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhc
Confidence            99999987532     23567999999876543  35777776543211  1111112 223457889999999986 66


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCC-cEEEEEeCCCchHHHh-c
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG-RTVITTIHQPSSRLYR-M  304 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~~~H~p~~~i~~-~  304 (691)
                      ++.+     +.|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++| .|||++||++. ++.+ +
T Consensus       396 ~~~~-----~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~-~~~~~~  469 (490)
T PRK10938        396 DAPF-----HSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAE-DAPACI  469 (490)
T ss_pred             cCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchh-hhhhhh
Confidence            7665     4699999999999999999999999999999999999999999999998775 47999999965 4655 6


Q ss_pred             CCEEEEecCCeEEEec
Q 005545          305 FDKVVVLSEGSPIYSG  320 (691)
Q Consensus       305 ~D~v~~L~~G~iv~~G  320 (691)
                      +|++++|++|++++.-
T Consensus       470 ~d~v~~l~~G~i~~~~  485 (490)
T PRK10938        470 THRLEFVPDGDIYRYV  485 (490)
T ss_pred             heeEEEecCCceEEee
Confidence            9999999999988653

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=2.1e-37  Score=297.94  Aligned_cols=221  Identities=28%  Similarity=0.464  Sum_probs=192.3

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +..|+.+||++++.                     ...+|+|+||++.+||+-+|||||||||||++++|+|.. .|.+|
T Consensus         3 ~~iL~~~~vsVsF~---------------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKt-rp~~G   60 (249)
T COG4674           3 PIILYLDGVSVSFG---------------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKT-RPQEG   60 (249)
T ss_pred             CceEEEeceEEEEc---------------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccC-CCCcc
Confidence            35789999999987                     245899999999999999999999999999999999965 57799


Q ss_pred             EEEECC-EeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-----CCCHHHHHHHHHHHHHHcCCCcc
Q 005545          157 KITYNG-RQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-----KLTREEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       157 ~I~~~G-~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-----~~~~~~~~~~v~~~l~~lgL~~~  225 (691)
                      +++++| .++.+     ..|..||--||.|..|+.+||+|||..+.....+-     .....+.+++++++|+..||.+.
T Consensus        61 ~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~  140 (249)
T COG4674          61 EVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE  140 (249)
T ss_pred             eEEEcCchhhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh
Confidence            999999 77753     24668999999999999999999999875321100     01123445689999999999999


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      ++...+     .||.||||++.|++-++.+|++|+||||++|+--....+.-++|++++. +.+|+++.||+ ..+.+++
T Consensus       141 ~~~~A~-----~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM-~Fvr~~A  213 (249)
T COG4674         141 RDRLAA-----LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDM-GFVREIA  213 (249)
T ss_pred             hhhhhh-----hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccH-HHHHHhh
Confidence            988776     4999999999999999999999999999999999999999999999987 48999999996 5689999


Q ss_pred             CEEEEecCCeEEEecCHhHHH
Q 005545          306 DKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       306 D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      |+|.+|++|.+...|+.+++.
T Consensus       214 ~~VTVlh~G~VL~EGsld~v~  234 (249)
T COG4674         214 DKVTVLHEGSVLAEGSLDEVQ  234 (249)
T ss_pred             heeEEEeccceeecccHHHhh
Confidence            999999999999999999884

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.4e-37  Score=313.16  Aligned_cols=243  Identities=26%  Similarity=0.400  Sum_probs=195.0

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .+..+||+..|.................+.++....+++|+||+|++|++++++|||||||||+||+|+|++ .|.+|.|
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll-~p~~G~v   81 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLL-LPTSGKV   81 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCcc-ccCCCeE
Confidence            567888888776432211000000000111223345899999999999999999999999999999999987 4779999


Q ss_pred             EECCEeCCh---hccccEEEEc-cCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          159 TYNGRQFSS---SLKRKTGFVT-QDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       159 ~~~G~~~~~---~~~~~igyv~-Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      .++|.+.-.   .+-+.+++|+ |.-.+...+-+.|.+......   .+++.++..++.+.+.+.++|+...+.++    
T Consensus        82 ~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~I---y~Ipd~~F~~r~~~l~eiLdl~~~lk~~v----  154 (325)
T COG4586          82 RVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLI---YEIPDDEFAERLDFLTEILDLEGFLKWPV----  154 (325)
T ss_pred             EecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHH---HhCCHHHHHHHHHHHHHHhcchhhhhhhh----
Confidence            999986532   3445788876 445566667788877654333   35677888899999999999998887766    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                       |.||-|||.|+.||.+|+++|+||||||||-|||..++.+|.+.|++..+ ++.||+.+||+.. .+..+||||++|+.
T Consensus       155 -r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~  232 (325)
T COG4586         155 -RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQ  232 (325)
T ss_pred             -hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeC
Confidence             67999999999999999999999999999999999999999999999986 5899999999965 68899999999999


Q ss_pred             CeEEEecCHhHHHHHhhh
Q 005545          314 GSPIYSGRAAQVMDYFGS  331 (691)
Q Consensus       314 G~iv~~G~~~~~~~~f~~  331 (691)
                      |+++|+|+.+++.+-|..
T Consensus       233 Gqlv~dg~l~~l~~~f~~  250 (325)
T COG4586         233 GQLVFDGTLAQLQEQFGP  250 (325)
T ss_pred             CcEeecccHHHHHHHhCC
Confidence            999999999999876654

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=100.00  E-value=5.7e-37  Score=381.93  Aligned_cols=213  Identities=24%  Similarity=0.408  Sum_probs=172.7

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                  ..+.+|+|+||+|++||++||+||||||||||+++|+|++ .|.+|+|
T Consensus       382 ~I~~~nVsf~Y~~~------------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~-~p~~G~I  442 (1466)
T PTZ00265        382 KIQFKNVRFHYDTR------------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLY-DPTEGDI  442 (1466)
T ss_pred             cEEEEEEEEEcCCC------------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhc-cCCCCeE
Confidence            69999999999731                  1235999999999999999999999999999999999977 5789999


Q ss_pred             EEC-CEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhh-cC--------CC------C---------------
Q 005545          159 TYN-GRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALL-RL--------PK------K---------------  203 (691)
Q Consensus       159 ~~~-G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~-~~--------~~------~---------------  203 (691)
                      +++ |.++..    .+|+.||||+|++.+|+ .||+|||.++... +.        ..      .               
T Consensus       443 ~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  521 (1466)
T PTZ00265        443 IINDSHNLKDINLKWWRSKIGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGD  521 (1466)
T ss_pred             EEeCCcchhhCCHHHHHHhccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccch
Confidence            994 677642    46788999999999997 5999999986310 00        00      0               


Q ss_pred             ---------C---------CHHHHHHHHHHHHHHcCC-------CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCE
Q 005545          204 ---------L---------TREEKIEQAEMVIMELGL-------TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSC  258 (691)
Q Consensus       204 ---------~---------~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~i  258 (691)
                               .         ......+.+.++++.+++       ++..||.+|. ....||||||||++|||||+.+|+|
T Consensus       522 ~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~-~g~~LSGGQkQRiaIARAll~~P~I  600 (1466)
T PTZ00265        522 LNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGS-NASKLSGGQKQRISIARAIIRNPKI  600 (1466)
T ss_pred             hhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCC-CCCcCCHHHHHHHHHHHHHhcCCCE
Confidence                     0         000112346666666654       4556788875 3567999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          259 LLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       259 LlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      ||||||||+||+.++..+.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus       601 LlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g  655 (1466)
T PTZ00265        601 LILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR  655 (1466)
T ss_pred             EEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence            999999999999999999999999986 58999999999753 4 789999999986

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=7.7e-37  Score=311.43  Aligned_cols=195  Identities=27%  Similarity=0.424  Sum_probs=167.6

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..++.+||++.|+...+   +.         +.....+++||||+|++||+++|+|+||||||||-|+|.|+. .|++|+
T Consensus         3 ~ll~v~~l~k~f~~~~~---~~---------~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~-~pt~G~   69 (268)
T COG4608           3 PLLEVKNLKKYFPVGKG---FG---------KKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLE-EPTSGE   69 (268)
T ss_pred             ceEEEeccEEEEecccc---cC---------cccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCc-CCCCce
Confidence            46899999999985421   10         111357999999999999999999999999999999999977 578999


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCc
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFR  236 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~  236 (691)
                      |+++|+++....                                    +++..+++.++|+.+||.. ..++     ++.
T Consensus        70 i~f~g~~i~~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~r-----yPh  108 (268)
T COG4608          70 ILFEGKDITKLS------------------------------------KEERRERVLELLEKVGLPEEFLYR-----YPH  108 (268)
T ss_pred             EEEcCcchhhcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhhc-----CCc
Confidence            999998864311                                    3455678999999999865 3333     446


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      ++|||||||++|||||+.+|+++++|||+|+||...+.+++++|++++++ |.|.++++||. ..+..++||+.+|..|+
T Consensus       109 elSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~G~  187 (268)
T COG4608         109 ELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYLGK  187 (268)
T ss_pred             ccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEecCc
Confidence            89999999999999999999999999999999999999999999999975 99999999996 46899999999999999


Q ss_pred             EEEecCHhHHHH
Q 005545          316 PIYSGRAAQVMD  327 (691)
Q Consensus       316 iv~~G~~~~~~~  327 (691)
                      +|+.|+.++++.
T Consensus       188 iVE~g~~~~~~~  199 (268)
T COG4608         188 IVEIGPTEEVFS  199 (268)
T ss_pred             eeEecCHHHHhh
Confidence            999999999964

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=100.00  E-value=9.6e-37  Score=350.36  Aligned_cols=210  Identities=19%  Similarity=0.275  Sum_probs=171.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+|+|+.++.                .++.+|+|+|+++++||.+||+||||||||||+++|+|.. .|.+|+
T Consensus       336 ~~i~~~~v~f~y~~~~~----------------~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~-~p~~G~  398 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEG----------------SEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY-IPQEGE  398 (555)
T ss_pred             ceEEEEEEEEEeCCCCC----------------CcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCC-CCCCcE
Confidence            46999999999973210                0135899999999999999999999999999999999977 578999


Q ss_pred             EEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc-C
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-G  232 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~  232 (691)
                      |.+||.++.+    .+++.++||+||+.+|.. |++||+.       + .    ..+++++++++.+++.+..+.... -
T Consensus       399 i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g~  465 (555)
T TIGR01194       399 ILLDGAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGGF  465 (555)
T ss_pred             EEECCEECCCCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c-c----hhHHHHHHHHHHcCCchhhccccccc
Confidence            9999999863    467889999999998864 7888731       1 1    123457788899988765433221 1


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR-GLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      .....||||||||++|||||+.+|++|+|||||++||+.++..+.+.+. .+..+|+|+|+++|+++  ..+.||+|++|
T Consensus       466 ~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l  543 (555)
T TIGR01194       466 STTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKL  543 (555)
T ss_pred             CCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEE
Confidence            1225699999999999999999999999999999999999999998664 56566899999999974  45799999999


Q ss_pred             cCCeEEEe
Q 005545          312 SEGSPIYS  319 (691)
Q Consensus       312 ~~G~iv~~  319 (691)
                      ++|++++.
T Consensus       544 ~~G~i~~~  551 (555)
T TIGR01194       544 AAGCIVKD  551 (555)
T ss_pred             ECCEEEEe
Confidence            99999864

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=100.00  E-value=2.1e-36  Score=306.49  Aligned_cols=194  Identities=22%  Similarity=0.231  Sum_probs=160.5

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-ECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS  193 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~  193 (691)
                      +|+||||+|++||+++|+||||||||||+|+|+|+. ++.+|+|. ++|..+         .+.+++.+++.+|++||+.
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~-~~~sG~i~~~~~~~~---------~~~~~~~l~~~ltv~enl~   71 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLD-APDEGDFIGLRGDAL---------PLGANSFILPGLTGEENAR   71 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCCCEEEecCcee---------ccccccccCCcCcHHHHHH
Confidence            799999999999999999999999999999999976 47899997 777533         1234667889999999999


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 005545          194 YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA  273 (691)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~  273 (691)
                      +.....   ....++.   .+.+.+.++|+...++.++     .||||||||++||++|+.+|+++||||||++||+.++
T Consensus        72 ~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~  140 (213)
T PRK15177         72 MMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ  140 (213)
T ss_pred             HHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence            865432   1222222   2234456778777777664     6999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhh
Q 005545          274 QRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS  331 (691)
Q Consensus       274 ~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~  331 (691)
                      ..+.+.|.+..+ ++|+|++||++. .+.++||++++|++|++++.|+.+++.++++.
T Consensus       141 ~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~  196 (213)
T PRK15177        141 LRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ  196 (213)
T ss_pred             HHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence            999998865443 468999999975 57789999999999999999999999877654

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.1e-36  Score=345.83  Aligned_cols=204  Identities=23%  Similarity=0.398  Sum_probs=173.7

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||+|+|+|++ .+.+|+
T Consensus       318 ~~l~~~~l~~~~~~---------------------~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G~  375 (530)
T PRK15064        318 NALEVENLTKGFDN---------------------GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGEL-EPDSGT  375 (530)
T ss_pred             ceEEEEeeEEeeCC---------------------ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCeE
Confidence            47999999999851                     34899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCChhccccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPL  234 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~  234 (691)
                      |.++|+       +.+||++|++.  +++.+||+|++.+..  . . .    ..+++++++++.+|+. +..++.+    
T Consensus       376 i~~~~~-------~~i~~~~q~~~~~~~~~~t~~~~~~~~~--~-~-~----~~~~~~~~~l~~~~l~~~~~~~~~----  436 (530)
T PRK15064        376 VKWSEN-------ANIGYYAQDHAYDFENDLTLFDWMSQWR--Q-E-G----DDEQAVRGTLGRLLFSQDDIKKSV----  436 (530)
T ss_pred             EEECCc-------eEEEEEcccccccCCCCCcHHHHHHHhc--c-C-C----ccHHHHHHHHHHcCCChhHhcCcc----
Confidence            999873       46999999864  566799999986421  0 1 1    1234678899999994 5666665    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                       ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++   +.|||++|||+ ..+.++||++++|++|
T Consensus       437 -~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~-~~~~~~~d~i~~l~~g  511 (530)
T PRK15064        437 -KVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDR-EFVSSLATRIIEITPD  511 (530)
T ss_pred             -cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence             469999999999999999999999999999999999999999999987   35999999996 4678899999999999


Q ss_pred             eEE-EecCHhHHHH
Q 005545          315 SPI-YSGRAAQVMD  327 (691)
Q Consensus       315 ~iv-~~G~~~~~~~  327 (691)
                      +++ +.|+++++.+
T Consensus       512 ~i~~~~g~~~~~~~  525 (530)
T PRK15064        512 GVVDFSGTYEEYLR  525 (530)
T ss_pred             eEEEcCCCHHHHHH
Confidence            998 8898887654

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.1e-37  Score=306.14  Aligned_cols=219  Identities=28%  Similarity=0.488  Sum_probs=185.5

Q ss_pred             ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 005545           75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF  154 (691)
Q Consensus        75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~  154 (691)
                      ..+..|+++||+.++.                     +|+||+|+|++|++||-.+|+|||||||||||++++|.. ++.
T Consensus        27 ~~~~li~l~~v~v~r~---------------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~-~ps   84 (257)
T COG1119          27 INEPLIELKNVSVRRN---------------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEH-PPS   84 (257)
T ss_pred             CCcceEEecceEEEEC---------------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhccc-CCC
Confidence            3556799999999987                     357999999999999999999999999999999999966 456


Q ss_pred             ceEEEECCEeCCh-----hccccEEEEccC--CCCCCCCCHHHHHHHH--HhhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 005545          155 SGKITYNGRQFSS-----SLKRKTGFVTQD--DVLYPHLTVLETLSYA--ALLRLPKKLTREEKIEQAEMVIMELGLTRC  225 (691)
Q Consensus       155 ~G~I~~~G~~~~~-----~~~~~igyv~Q~--~~l~~~lTV~E~l~~~--~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~  225 (691)
                      +|.+.+.|+...+     ++|++||+|.-.  ..+.+..+|+|-+.-+  +..........++..+++..+++.+|+.+.
T Consensus        85 sg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l  164 (257)
T COG1119          85 SGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL  164 (257)
T ss_pred             CCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh
Confidence            9999999998743     578999999743  3455677888876522  222222212334556788999999999999


Q ss_pred             ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC--CcEEEEEeCCCchHHHh
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG--GRTVITTIHQPSSRLYR  303 (691)
Q Consensus       226 ~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~~~H~p~~~i~~  303 (691)
                      +|+..+     .||-||||||-|||||+.+|++||||||++|||...++.+++.|.+++..  +.++|++||+. +++-.
T Consensus       165 a~r~~~-----~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~  238 (257)
T COG1119         165 ADRPFG-----SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPP  238 (257)
T ss_pred             ccCchh-----hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhccc
Confidence            988775     59999999999999999999999999999999999999999999999865  88999999996 56889


Q ss_pred             cCCEEEEecCCeEEEecC
Q 005545          304 MFDKVVVLSEGSPIYSGR  321 (691)
Q Consensus       304 ~~D~v~~L~~G~iv~~G~  321 (691)
                      .+++++++++|+++++|.
T Consensus       239 ~~th~lll~~g~v~~~g~  256 (257)
T COG1119         239 CFTHRLLLKEGEVVAQGK  256 (257)
T ss_pred             ccceEEEeeCCceeeccc
Confidence            999999999999999874

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=3.3e-36  Score=345.74  Aligned_cols=212  Identities=26%  Similarity=0.374  Sum_probs=173.2

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      .+|+++||+++|+.                    .+.+|+|+||+|++||+++|+|||||||||||++|+|+. ++++|+
T Consensus         3 ~~i~~~nls~~~~~--------------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~-~p~~G~   61 (552)
T TIGR03719         3 YIYTMNRVSKVVPP--------------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVD-KEFNGE   61 (552)
T ss_pred             EEEEEeeEEEecCC--------------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCce
Confidence            36899999999851                    135899999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh-c------------CCCCCCHH-----------------
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL-R------------LPKKLTRE-----------------  207 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~-~------------~~~~~~~~-----------------  207 (691)
                      |.+++       +..+|||+|++.+++.+||+||+.++... +            ........                 
T Consensus        62 i~~~~-------~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (552)
T TIGR03719        62 ARPAP-------GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAA  134 (552)
T ss_pred             EEecC-------CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhc
Confidence            99975       24699999999999999999999875311 0            00000000                 


Q ss_pred             ---HHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 005545          208 ---EKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA  284 (691)
Q Consensus       208 ---~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~  284 (691)
                         +..++++++++.+|+.. .++.+     ..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ 
T Consensus       135 ~~~~~~~~~~~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~-  207 (552)
T TIGR03719       135 DAWDLDRKLEIAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-  207 (552)
T ss_pred             CcchhHHHHHHHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC-
Confidence               01235667788888853 45544     469999999999999999999999999999999999999999999886 


Q ss_pred             hCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHHH
Q 005545          285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVMD  327 (691)
Q Consensus       285 ~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~  327 (691)
                        +.|||++||++ ..+..+||++++|++|+++ +.|+.++..+
T Consensus       208 --~~tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~  248 (552)
T TIGR03719       208 --PGTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE  248 (552)
T ss_pred             --CCeEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence              35999999996 4678899999999999976 7888887654

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=2.7e-36  Score=378.10  Aligned_cols=213  Identities=25%  Similarity=0.321  Sum_probs=182.9

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+++|+..                   .+.+|+|+||+|++||.+||+|+||||||||+++|.|+..  .+|+|
T Consensus      1217 ~I~f~nVs~~Y~~~-------------------~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~~G~I 1275 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEA-------------------GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS--TEGEI 1275 (1490)
T ss_pred             eEEEEEEEEEeCCC-------------------CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC--CCcEE
Confidence            69999999999732                   1359999999999999999999999999999999999763  59999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccc
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-------RCRN  227 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~  227 (691)
                      ++||.++..    .+|++++|||||+.+|+. ||+|||....      ..+.    +.+.++++..+|.       +..|
T Consensus      1276 ~IdG~di~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLd 1344 (1490)
T TIGR01271      1276 QIDGVSWNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLD 1344 (1490)
T ss_pred             EECCEEcccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCccccc
Confidence            999999864    578899999999999975 9999995321      1222    3455667776663       4578


Q ss_pred             ccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       228 ~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      +.+|+ ....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++..+ ++|||+++|+++.  ...||+
T Consensus      1345 t~v~e-~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~-~~TvI~IaHRl~t--i~~~Dr 1420 (1490)
T TIGR01271      1345 FVLVD-GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFS-NCTVILSEHRVEA--LLECQQ 1420 (1490)
T ss_pred             ccccc-CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH--HHhCCE
Confidence            88875 3456999999999999999999999999999999999999999999998754 7999999999753  467999


Q ss_pred             EEEecCCeEEEecCHhHHHH
Q 005545          308 VVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       308 v~~L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++|++++.|+++++++
T Consensus      1421 IlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271      1421 FLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred             EEEEECCEEEEeCCHHHHHc
Confidence            99999999999999999864

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=100.00  E-value=6.6e-36  Score=309.21  Aligned_cols=179  Identities=25%  Similarity=0.270  Sum_probs=151.1

Q ss_pred             eeeceEEEEe-----CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHH
Q 005545          115 VLNGVSGMVK-----PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       115 iL~~vs~~i~-----~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      .++|++++++     +||+++|+||||||||||+++|+|.+ ++.+|+|.++|.        .++|++|+....+.+||+
T Consensus         9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~-~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~   79 (246)
T cd03237           9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVL-KPDEGDIEIELD--------TVSYKPQYIKADYEGTVR   79 (246)
T ss_pred             ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCC-cCCCCeEEECCc--------eEEEecccccCCCCCCHH
Confidence            5666666665     79999999999999999999999977 477999999984        599999998877789999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                      |++.+.....   . .   .....+++++.++|.+..++.+     ..|||||||||+||++|+.+|++++|||||++||
T Consensus        80 e~l~~~~~~~---~-~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD  147 (246)
T cd03237          80 DLLSSITKDF---Y-T---HPYFKTEIAKPLQIEQILDREV-----PELSGGELQRVAIAACLSKDADIYLLDEPSAYLD  147 (246)
T ss_pred             HHHHHHhhhc---c-c---cHHHHHHHHHHcCCHHHhhCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence            9987643211   0 1   1124577899999987777665     4699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          270 STTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +.++..+.+.|+++++ .|+|||++||++. .+..+||++++|+++.
T Consensus       148 ~~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~  193 (246)
T cd03237         148 VEQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEP  193 (246)
T ss_pred             HHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCC
Confidence            9999999999999986 4899999999964 5778999999997643

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=2e-35  Score=339.50  Aligned_cols=206  Identities=24%  Similarity=0.357  Sum_probs=170.1

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||+++|+|++ ++.+|
T Consensus       322 ~~~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~-~p~~G  379 (556)
T PRK11819        322 DKVIEAENLSKSFGD---------------------RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQE-QPDSG  379 (556)
T ss_pred             CeEEEEEeEEEEECC---------------------eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCe
Confidence            357999999999851                     35999999999999999999999999999999999977 47799


Q ss_pred             EEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 005545          157 KITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPL  234 (691)
Q Consensus       157 ~I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~  234 (691)
                      +|.+++.       ..+||++|++ .+++.+||+|++.+.....   .....  ...++++++.+|+.+ ..++.+    
T Consensus       380 ~i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~----  443 (556)
T PRK11819        380 TIKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---KVGNR--EIPSRAYVGRFNFKGGDQQKKV----  443 (556)
T ss_pred             EEEECCc-------eEEEEEeCchhhcCCCCCHHHHHHhhcccc---ccccc--HHHHHHHHHhCCCChhHhcCch----
Confidence            9999542       2599999996 6888999999998764221   11111  123457899999964 456655    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-  313 (691)
                       ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.  | |||++|||+. .+..+||++++|++ 
T Consensus       444 -~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~  518 (556)
T PRK11819        444 -GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGD  518 (556)
T ss_pred             -hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECC
Confidence             4699999999999999999999999999999999999999999999973  4 8999999964 67889999999986 


Q ss_pred             CeEE-EecCHhHH
Q 005545          314 GSPI-YSGRAAQV  325 (691)
Q Consensus       314 G~iv-~~G~~~~~  325 (691)
                      |++. +.|+.++.
T Consensus       519 g~~~~~~g~~~~~  531 (556)
T PRK11819        519 SQVEWFEGNFQEY  531 (556)
T ss_pred             CeEEEecCCHHHH
Confidence            7876 56665543

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-36  Score=321.17  Aligned_cols=220  Identities=33%  Similarity=0.482  Sum_probs=187.3

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .+-.+.|+||+|.|..                    .+++|+++||++++|+.+|++||||+||||++++|-..+ ...+
T Consensus       259 ~~g~v~F~~V~F~y~~--------------------~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFy-D~~s  317 (497)
T COG5265         259 RLGAVAFINVSFAYDP--------------------RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFY-DVNS  317 (497)
T ss_pred             ccceEEEEEEEeeccc--------------------cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHh-CCcC
Confidence            3446899999999973                    357999999999999999999999999999999999866 4679


Q ss_pred             eEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccc
Q 005545          156 GKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCR  226 (691)
Q Consensus       156 G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~  226 (691)
                      |.|.+||+++..    .+|+-||.||||..||. -|...|+.|+..     ..+.++..+.     +.+.++  .+++..
T Consensus       318 G~I~id~qdir~vtq~slR~aIg~VPQDtvLFN-Dti~yni~ygr~-----~at~eev~aaa~~aqi~~fi~--~lP~gy  389 (497)
T COG5265         318 GSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFN-DTIAYNIKYGRP-----DATAEEVGAAAEAAQIHDFIQ--SLPEGY  389 (497)
T ss_pred             ceEEEcchhHHHhHHHHHHHHhCcCcccceehh-hhHHHHHhccCc-----cccHHHHHHHHHHhhhhHHHH--hCchhh
Confidence            999999999853    57889999999999985 599999988642     3344444332     333444  357889


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      ++.||.... .|||||||||+|||+++.+|+||++||.||+||..+.++|...|+++++ |+|.+++.|..+.  .--+|
T Consensus       390 ~t~Vgergl-klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~-~rttlviahrlst--i~~ad  465 (497)
T COG5265         390 DTGVGERGL-KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSA-GRTTLVIAHRLST--IIDAD  465 (497)
T ss_pred             hcccchhee-eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhC-CCeEEEEeehhhh--ccCCc
Confidence            999997332 3899999999999999999999999999999999999999999999984 8999999999765  35699


Q ss_pred             EEEEecCCeEEEecCHhHHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~~  328 (691)
                      +|++|++|+|++.|.+++++..
T Consensus       466 eiivl~~g~i~erg~h~~ll~~  487 (497)
T COG5265         466 EIIVLDNGRIVERGTHEELLAA  487 (497)
T ss_pred             eEEEeeCCEEEecCcHHHHHHc
Confidence            9999999999999999999864

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=2.4e-35  Score=339.06  Aligned_cols=198  Identities=26%  Similarity=0.312  Sum_probs=170.7

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +..|+++|++++|..                      ..|+++|++|++||+++|+||||||||||+|+|+|++ ++++|
T Consensus       338 ~~~l~~~~ls~~~~~----------------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~-~p~~G  394 (590)
T PRK13409        338 ETLVEYPDLTKKLGD----------------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVL-KPDEG  394 (590)
T ss_pred             ceEEEEcceEEEECC----------------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCce
Confidence            457999999998851                      2489999999999999999999999999999999987 47799


Q ss_pred             EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCc
Q 005545          157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~  236 (691)
                      +|.++         ..++|++|+..+++.+||+|++.+....     ...   ...++++++.++|.+..++.++     
T Consensus       395 ~I~~~---------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----  452 (590)
T PRK13409        395 EVDPE---------LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----  452 (590)
T ss_pred             EEEEe---------eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----
Confidence            99986         1599999998888899999999875321     111   1246789999999877777664     


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++ |+|||++|||+. .+..+||++++|+ |+
T Consensus       453 ~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~  530 (590)
T PRK13409        453 DLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GE  530 (590)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-Cc
Confidence            69999999999999999999999999999999999999999999999874 899999999964 5788999999996 58


Q ss_pred             EEEecC
Q 005545          316 PIYSGR  321 (691)
Q Consensus       316 iv~~G~  321 (691)
                      +...|.
T Consensus       531 ~~~~g~  536 (590)
T PRK13409        531 PGKHGH  536 (590)
T ss_pred             ceeeee
Confidence            877775

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=100.00  E-value=4e-35  Score=336.76  Aligned_cols=205  Identities=24%  Similarity=0.374  Sum_probs=169.3

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|..                     +.+|+|+|++|++||+++|+||||||||||+++|+|.. ++.+|+
T Consensus       321 ~~l~~~~l~~~~~~---------------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~-~p~~G~  378 (552)
T TIGR03719       321 KVIEAENLSKGFGD---------------------KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQE-QPDSGT  378 (552)
T ss_pred             eEEEEeeEEEEECC---------------------eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeE
Confidence            46999999999851                     35999999999999999999999999999999999977 467999


Q ss_pred             EEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCC
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLF  235 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~  235 (691)
                      |.+++.       ..+||++|++ .+++.+||.|++.++....   .....  ..+++++++.+||.+ ..++.+     
T Consensus       379 i~~~~~-------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~-----  441 (552)
T TIGR03719       379 IKIGET-------VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKV-----  441 (552)
T ss_pred             EEECCc-------eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCch-----
Confidence            999542       2599999996 4788899999998764221   11111  123557899999964 456655     


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-C
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-G  314 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-G  314 (691)
                      ..|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++.  | |||++|||+ ..+.++||++++|++ |
T Consensus       442 ~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~-~~~~~~~d~i~~l~~~~  517 (552)
T TIGR03719       442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDR-WFLDRIATHILAFEGDS  517 (552)
T ss_pred             hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCH-HHHHHhCCEEEEEECCC
Confidence            4699999999999999999999999999999999999999999999983  3 899999996 467889999999986 5


Q ss_pred             eEE-EecCHhHH
Q 005545          315 SPI-YSGRAAQV  325 (691)
Q Consensus       315 ~iv-~~G~~~~~  325 (691)
                      +++ +.|+.++.
T Consensus       518 ~~~~~~g~~~~~  529 (552)
T TIGR03719       518 HVEWFEGNYSEY  529 (552)
T ss_pred             eEEEeCCCHHHH
Confidence            876 55665443

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=2e-35  Score=281.35  Aligned_cols=228  Identities=25%  Similarity=0.417  Sum_probs=194.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||++++....+   ++         +.....+++.|||+++.|+.+||+|.||||||||.|+|+|.+ +|++|+|
T Consensus         4 LLeV~nLsKtF~~~~~---lf---------~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi-~PTsG~i   70 (267)
T COG4167           4 LLEVRNLSKTFRYRTG---LF---------RRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMI-EPTSGEI   70 (267)
T ss_pred             hhhhhhhhhhhhhhhh---hh---------hhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhccc-CCCCceE
Confidence            4788999888874321   11         112346899999999999999999999999999999999987 5789999


Q ss_pred             EECCEeCCh---hc-cccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccc
Q 005545          159 TYNGRQFSS---SL-KRKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~---~~-~~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg  231 (691)
                      ++||+++.-   .. .+.|-+++||+.  +.|.+.+.+-|....  ++..++..+++.+++.+.|+.+||- +.++-.  
T Consensus        71 l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~--  146 (267)
T COG4167          71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHANYY--  146 (267)
T ss_pred             EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccccc--
Confidence            999998842   23 357999999986  889999988887764  4456778888999999999999984 445443  


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                         +..||-||||||++||||+.+|+|++.||...+||...+.+++++.-+|++ .|.+-|.++.+. ..+..++|+|+|
T Consensus       147 ---~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~viV  222 (267)
T COG4167         147 ---PHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQVLV  222 (267)
T ss_pred             ---hhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhcccEEE
Confidence               357999999999999999999999999999999999999999999999997 499999999885 468999999999


Q ss_pred             ecCCeEEEecCHhHHHH
Q 005545          311 LSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++++.|++.+++.
T Consensus       223 M~EG~vvE~G~t~~v~a  239 (267)
T COG4167         223 MHEGEVVERGSTADVLA  239 (267)
T ss_pred             EecCceeecCChhhhhc
Confidence            99999999999998854

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=1.2e-34  Score=290.09  Aligned_cols=237  Identities=23%  Similarity=0.306  Sum_probs=196.6

Q ss_pred             eEEEEEeEEEEEccCCCCC-ccccc--CCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 005545           78 VTLKFEDVAYSINLHTSKG-SCFAT--SHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF  154 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~-~~~~~--~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~  154 (691)
                      +.|+++||+..++....+. .....  ..-.+........+|+||||++++||.+||+|+||||||||||+|+|.+ +|+
T Consensus         2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~-~Pt   80 (249)
T COG1134           2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIY-KPT   80 (249)
T ss_pred             cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCcc-CCC
Confidence            4689999999998653211 00000  0001112455678999999999999999999999999999999999977 578


Q ss_pred             ceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          155 SGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       155 ~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      +|+|.++|+-..- +--..       .+.|.+|.+||+.+-+.+.   ++++++.+++++++++--+|.+..|.++    
T Consensus        81 ~G~v~v~G~v~~l-i~lg~-------Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv----  145 (249)
T COG1134          81 SGKVKVTGKVAPL-IELGA-------GFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV----  145 (249)
T ss_pred             CceEEEcceEehh-hhccc-------CCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch----
Confidence            9999999963211 11112       3456799999999866542   5678999999999999999999999877    


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                       +.+|-||+-|++.|.+...+|+|||+||-.+--|+.-++...+.++++.++++|||++|||+ ..+.++||++++|++|
T Consensus       146 -ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G  223 (249)
T COG1134         146 -KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDL-GAIKQYCDRAIWLEHG  223 (249)
T ss_pred             -hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhcCeeEEEeCC
Confidence             67999999999999999999999999999999999999999999999988889999999996 5699999999999999


Q ss_pred             eEEEecCHhHHHHHhhhc
Q 005545          315 SPIYSGRAAQVMDYFGSI  332 (691)
Q Consensus       315 ~iv~~G~~~~~~~~f~~~  332 (691)
                      ++.+.|+++++.++|...
T Consensus       224 ~i~~~G~~~~vi~~Y~~~  241 (249)
T COG1134         224 QIRMEGSPEEVIPAYEED  241 (249)
T ss_pred             EEEEcCCHHHHHHHHHHh
Confidence            999999999999988764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=100.00  E-value=2.5e-35  Score=306.36  Aligned_cols=189  Identities=26%  Similarity=0.380  Sum_probs=158.5

Q ss_pred             ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-----------ECCEeCCh---hcc---ccEEEE
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-----------YNGRQFSS---SLK---RKTGFV  176 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-----------~~G~~~~~---~~~---~~igyv  176 (691)
                      .+|+|+| .+++||+++|+||||||||||||+|+|++ ++++|+|.           ++|+++..   ..+   ..++|+
T Consensus        15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~-~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~   92 (255)
T cd03236          15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKL-KPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK   92 (255)
T ss_pred             hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCc-CCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence            4899999 59999999999999999999999999987 57799996           78887643   111   247899


Q ss_pred             ccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545          177 TQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP  256 (691)
Q Consensus       177 ~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P  256 (691)
                      +|+..+++. ++.+++.+..  +      .....+.+.++++.+||.+..++.+     +.||||||||++||++|+.+|
T Consensus        93 ~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p  158 (255)
T cd03236          93 PQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDA  158 (255)
T ss_pred             cchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCC
Confidence            999888874 8888887532  1      1223456789999999987766655     469999999999999999999


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545          257 SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG  320 (691)
Q Consensus       257 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G  320 (691)
                      +++++||||+|||+.++..+.+.|++++++|+|||+++|++. .+.++||++++|+ |++.+.|
T Consensus       159 ~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~  220 (255)
T cd03236         159 DFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG  220 (255)
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence            999999999999999999999999999888899999999964 5777999999994 6676544

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.6e-35  Score=338.48  Aligned_cols=203  Identities=26%  Similarity=0.388  Sum_probs=170.9

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.|+.                     +.+|+|+||+|++||++||+||||||||||||+|+|.+ ++++|+
T Consensus       311 ~~l~~~~l~~~y~~---------------------~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G~  368 (638)
T PRK10636        311 PLLKMEKVSAGYGD---------------------RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGEL-APVSGE  368 (638)
T ss_pred             ceEEEEeeEEEeCC---------------------eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCe
Confidence            46999999999851                     35999999999999999999999999999999999977 577999


Q ss_pred             EEECCEeCChhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCC
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPL  234 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~  234 (691)
                      |.+++.       ..+||++|+.  .+.+..|+.+++.-   ..      .....++++++++.+++.. ..++.++   
T Consensus       369 i~~~~~-------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~------~~~~~~~~~~~L~~~~l~~~~~~~~~~---  429 (638)
T PRK10636        369 IGLAKG-------IKLGYFAQHQLEFLRADESPLQHLAR---LA------PQELEQKLRDYLGGFGFQGDKVTEETR---  429 (638)
T ss_pred             EEECCC-------EEEEEecCcchhhCCccchHHHHHHH---hC------chhhHHHHHHHHHHcCCChhHhcCchh---
Confidence            999741       2599999974  35566788877531   11      1122356788999999963 5666664   


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                        .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++  .| |||++|||+ ..+.++||++++|++|
T Consensus       430 --~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~-~~~~~~~d~i~~l~~G  503 (638)
T PRK10636        430 --RFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDR-HLLRSTTDDLYLVHDG  503 (638)
T ss_pred             --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCH-HHHHHhCCEEEEEECC
Confidence              69999999999999999999999999999999999999999999998  34 999999996 4688899999999999


Q ss_pred             eEE-EecCHhHHHH
Q 005545          315 SPI-YSGRAAQVMD  327 (691)
Q Consensus       315 ~iv-~~G~~~~~~~  327 (691)
                      +++ +.|+.++..+
T Consensus       504 ~i~~~~g~~~~~~~  517 (638)
T PRK10636        504 KVEPFDGDLEDYQQ  517 (638)
T ss_pred             EEEEcCCCHHHHHH
Confidence            997 8899887644

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=3.4e-35  Score=286.90  Aligned_cols=202  Identities=28%  Similarity=0.389  Sum_probs=168.9

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChh--c--cccEEEEccCCC--CCCC
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--L--KRKTGFVTQDDV--LYPH  185 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~--~--~~~igyv~Q~~~--l~~~  185 (691)
                      ++++|+++|++|.+|+++-|+|.||||||||+|+|+|.+ .+++|+|.++|.++++.  .  ...++-|+|||.  ..+.
T Consensus        18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l-~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~   96 (263)
T COG1101          18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDL-KPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE   96 (263)
T ss_pred             HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCcc-ccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCccc
Confidence            578999999999999999999999999999999999977 57899999999999752  2  236788999985  7999


Q ss_pred             CCHHHHHHHHHhhcCCCCCCH---HHHHHHHHHHHHHc--CCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEE
Q 005545          186 LTVLETLSYAALLRLPKKLTR---EEKIEQAEMVIMEL--GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLL  260 (691)
Q Consensus       186 lTV~E~l~~~~~~~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLl  260 (691)
                      ||+.||+..+..-.-.+....   ..+++...+-++.+  ||++..++++|     -|||||||-+++++|-++.|+||+
T Consensus        97 lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----lLSGGQRQalsL~MAtl~~pkiLL  171 (263)
T COG1101          97 LTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----LLSGGQRQALSLLMATLHPPKILL  171 (263)
T ss_pred             ccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----hccchHHHHHHHHHHhcCCCcEEE
Confidence            999999988753211112222   23333445555655  56788888887     499999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545          261 LDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG  320 (691)
Q Consensus       261 LDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G  320 (691)
                      |||-|++|||.++..+++.-.++.+ .+.|.+++||.+. ++.++.+|+++|++|+||.+-
T Consensus       172 LDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~IvlDv  231 (263)
T COG1101         172 LDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKIVLDV  231 (263)
T ss_pred             ecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeEEEEc
Confidence            9999999999999999999999876 4789999999965 577999999999999999753

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=1.6e-34  Score=336.48  Aligned_cols=206  Identities=26%  Similarity=0.404  Sum_probs=171.2

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...|+++||+++|..                     +.+|+|+||+|++||+++|+||||||||||||+|+|.+ +|++|
T Consensus       317 ~~~l~~~~l~~~~~~---------------------~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~-~p~~G  374 (635)
T PRK11147        317 KIVFEMENVNYQIDG---------------------KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQL-QADSG  374 (635)
T ss_pred             CceEEEeeeEEEECC---------------------eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCc
Confidence            357999999999851                     35999999999999999999999999999999999977 57799


Q ss_pred             EEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC-ccccccccCCC
Q 005545          157 KITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNSVVGGPL  234 (691)
Q Consensus       157 ~I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~  234 (691)
                      +|.+ |.++      .+||++|+. .+++.+||.|++.+.....   ...  .....+.++++.+++. +..++.++   
T Consensus       375 ~i~~-~~~~------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~---~~~--~~~~~~~~~l~~~~l~~~~~~~~~~---  439 (635)
T PRK11147        375 RIHC-GTKL------EVAYFDQHRAELDPEKTVMDNLAEGKQEV---MVN--GRPRHVLGYLQDFLFHPKRAMTPVK---  439 (635)
T ss_pred             EEEE-CCCc------EEEEEeCcccccCCCCCHHHHHHhhcccc---ccc--chHHHHHHHHHhcCCCHHHHhChhh---
Confidence            9998 4322      599999985 5889999999998753210   111  1134577889999985 45666664   


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec-C
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS-E  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~-~  313 (691)
                        .|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++   +.|||++|||. ..+..+||++++|+ +
T Consensus       440 --~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~-~~~~~~~d~i~~l~~~  513 (635)
T PRK11147        440 --ALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDR-QFVDNTVTECWIFEGN  513 (635)
T ss_pred             --hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCH-HHHHHhcCEEEEEeCC
Confidence              69999999999999999999999999999999999999999999887   35999999995 46788999999998 7


Q ss_pred             CeEE-EecCHhHH
Q 005545          314 GSPI-YSGRAAQV  325 (691)
Q Consensus       314 G~iv-~~G~~~~~  325 (691)
                      |++. |.|+.++.
T Consensus       514 g~i~~~~g~y~~y  526 (635)
T PRK11147        514 GKIGRYVGGYHDA  526 (635)
T ss_pred             CeEEEccCCHHHH
Confidence            9986 46776654

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=100.00  E-value=2.4e-34  Score=273.79  Aligned_cols=144  Identities=32%  Similarity=0.548  Sum_probs=131.0

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~  159 (691)
                      |+++|+++.|..                     ..+|+|+||++++||+++|+||||||||||+++|+|+. ++.+|+|.
T Consensus         1 l~~~~l~~~~~~---------------------~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~-~~~~G~i~   58 (144)
T cd03221           1 IELENLSKTYGG---------------------KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL-EPDEGIVT   58 (144)
T ss_pred             CEEEEEEEEECC---------------------ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCceEEE
Confidence            468899988852                     24899999999999999999999999999999999976 57799999


Q ss_pred             ECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC
Q 005545          160 YNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS  239 (691)
Q Consensus       160 ~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS  239 (691)
                      ++|+       +.++|++|                                                           ||
T Consensus        59 ~~~~-------~~i~~~~~-----------------------------------------------------------lS   72 (144)
T cd03221          59 WGST-------VKIGYFEQ-----------------------------------------------------------LS   72 (144)
T ss_pred             ECCe-------EEEEEEcc-----------------------------------------------------------CC
Confidence            9984       46999998                                                           79


Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +||+||++|||+|+.+|+++++||||+|||+.++..+.+.|+++   ++|+|+++|++. ++.+++|++++|++|+
T Consensus        73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~  144 (144)
T cd03221          73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK  144 (144)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence            99999999999999999999999999999999999999999987   479999999964 5778999999999985

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PLN03232 ABC transporter C family member; Provisional

Probab=100.00  E-value=2.4e-34  Score=361.14  Aligned_cols=207  Identities=23%  Similarity=0.379  Sum_probs=170.6

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++|+|+...                  ++.+|+|+|++|++||.++|+||||||||||+++|.|.++ +.+|.+
T Consensus       614 ~I~~~~vsF~y~~~~------------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~-~~~G~i  674 (1495)
T PLN03232        614 AISIKNGYFSWDSKT------------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS-HAETSS  674 (1495)
T ss_pred             cEEEEeeEEEcCCCC------------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc-ccCCCE
Confidence            599999999997311                  2358999999999999999999999999999999999774 667766


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccc
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG-------LTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg  231 (691)
                      .        ..++.++||+|++.++. -||+|||.|+..      .+++    +.+++++..+       |++..+|.+|
T Consensus       675 ~--------~~~~~Iayv~Q~p~Lf~-gTIreNI~fg~~------~~~e----~~~~vl~~~~L~~di~~Lp~Gd~T~IG  735 (1495)
T PLN03232        675 V--------VIRGSVAYVPQVSWIFN-ATVRENILFGSD------FESE----RYWRAIDVTALQHDLDLLPGRDLTEIG  735 (1495)
T ss_pred             E--------EecCcEEEEcCcccccc-ccHHHHhhcCCc------cCHH----HHHHHHHHhCCHHHHHhCCCCCCceec
Confidence            3        25678999999999996 599999998631      2232    2333444333       4566789998


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT-LRGLARGGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                      +. ...||||||||++||||+.++|+|++||||||+||+.++.++++. ++.+ .+|+|+|++||+++  ..+.+|+|++
T Consensus       736 e~-G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~  811 (1495)
T PLN03232        736 ER-GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIIL  811 (1495)
T ss_pred             CC-CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEE
Confidence            64 456999999999999999999999999999999999999999765 5544 35899999999975  3578999999


Q ss_pred             ecCCeEEEecCHhHHHH
Q 005545          311 LSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++++.|+.+++.+
T Consensus       812 L~~G~i~~~Gt~~eL~~  828 (1495)
T PLN03232        812 VSEGMIKEEGTFAELSK  828 (1495)
T ss_pred             EeCCEEEEecCHHHHHh
Confidence            99999999999999864

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.3e-34  Score=332.62  Aligned_cols=209  Identities=23%  Similarity=0.355  Sum_probs=164.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|.                     .+.+|+|+||+|++||++||+||||||||||||+|+|.+ .+++|+|
T Consensus         1 ~i~i~nls~~~g---------------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~-~pd~G~I   58 (638)
T PRK10636          1 MIVFSSLQIRRG---------------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEI-SADGGSY   58 (638)
T ss_pred             CEEEEEEEEEeC---------------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceE
Confidence            378999999986                     245999999999999999999999999999999999976 4789999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH--------h---------------hcC-CCCCCHHHHHHHHH
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAA--------L---------------LRL-PKKLTREEKIEQAE  214 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~--------~---------------~~~-~~~~~~~~~~~~v~  214 (691)
                      .++|..       .++|++|+...+ ..|+.+.+.-..        .               +.. .......+..++++
T Consensus        59 ~~~~~~-------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (638)
T PRK10636         59 TFPGNW-------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAA  130 (638)
T ss_pred             EecCCC-------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHH
Confidence            998742       388999865433 246655432110        0               000 00000112345788


Q ss_pred             HHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEE
Q 005545          215 MVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT  293 (691)
Q Consensus       215 ~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~  293 (691)
                      ++++.+|+. +..++.++     .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++   +.|||++
T Consensus       131 ~~L~~lgl~~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviiv  202 (638)
T PRK10636        131 SLLHGLGFSNEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILI  202 (638)
T ss_pred             HHHHhCCCCchhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEE
Confidence            899999996 46676664     69999999999999999999999999999999999999999999876   4699999


Q ss_pred             eCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545          294 IHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM  326 (691)
Q Consensus       294 ~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~  326 (691)
                      |||. ..+.++||++++|++|+++ |.|+.+...
T Consensus       203 sHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~~  235 (638)
T PRK10636        203 SHDR-DFLDPIVDKIIHIEQQSLFEYTGNYSSFE  235 (638)
T ss_pred             eCCH-HHHHHhcCEEEEEeCCEEEEecCCHHHHH
Confidence            9996 4678899999999999986 677766543

>PLN03073 ABC transporter F family; Provisional

Probab=100.00  E-value=8.6e-34  Score=331.96  Aligned_cols=207  Identities=22%  Similarity=0.333  Sum_probs=167.5

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      ..|+++||++.|+.                    .+.+|+|+||+|++||+++|+||||||||||||+|+|++ +|.+|+
T Consensus       507 ~~L~~~~ls~~y~~--------------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll-~p~~G~  565 (718)
T PLN03073        507 PIISFSDASFGYPG--------------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGEL-QPSSGT  565 (718)
T ss_pred             ceEEEEeeEEEeCC--------------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCCce
Confidence            57999999999851                    134899999999999999999999999999999999977 477999


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCc
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFR  236 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~  236 (691)
                      |.+++       +..+||++|+.  .+.+++.++.........+ ...    .++++++++.+|+.+ ..++.+     +
T Consensus       566 I~~~~-------~~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~  626 (718)
T PLN03073        566 VFRSA-------KVRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----Y  626 (718)
T ss_pred             EEECC-------ceeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----c
Confidence            99875       24699999985  3455666664332111111 111    245778999999974 455554     4


Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      .|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++.  +| |||++|||+ ..+..+||++++|++|++
T Consensus       627 ~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~-~~i~~~~drv~~l~~G~i  702 (718)
T PLN03073        627 TLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDE-HLISGSVDELWVVSEGKV  702 (718)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence            69999999999999999999999999999999999999998888765  34 999999996 457889999999999999


Q ss_pred             E-EecCHhHHHHH
Q 005545          317 I-YSGRAAQVMDY  328 (691)
Q Consensus       317 v-~~G~~~~~~~~  328 (691)
                      + +.|+.++..++
T Consensus       703 ~~~~g~~~~~~~~  715 (718)
T PLN03073        703 TPFHGTFHDYKKT  715 (718)
T ss_pred             EEeCCCHHHHHHH
Confidence            8 78887765544

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=100.00  E-value=2.6e-34  Score=335.59  Aligned_cols=199  Identities=22%  Similarity=0.320  Sum_probs=161.2

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++||++.++.                    ++.+|+|+|+++++||+++|+||||||||||+|+|+|+. ++.+|+|
T Consensus       451 ~i~~~nv~~~~~~--------------------~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~-~~~~G~i  509 (659)
T TIGR00954       451 GIKFENIPLVTPN--------------------GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELW-PVYGGRL  509 (659)
T ss_pred             eEEEEeeEEECCC--------------------CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCeE
Confidence            5999999998852                    135899999999999999999999999999999999976 5678999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccc----CCC
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG----GPL  234 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~  234 (691)
                      .+++       ++.++||+|++.+++. |++||+.++.......  ......++++++++.++|.+..++..|    ...
T Consensus       510 ~~~~-------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~  579 (659)
T TIGR00954       510 TKPA-------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDW  579 (659)
T ss_pred             eecC-------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCccccccc
Confidence            8864       5679999999998876 9999998753211000  000112456788999999765544221    012


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ...||||||||++|||+|+++|++++|||||+|||+.++..+.+.+++.   |+|+|+++|+++.  .+.+|++++|+.
T Consensus       580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~--~~~~d~il~l~~  653 (659)
T TIGR00954       580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSL--WKYHEYLLYMDG  653 (659)
T ss_pred             ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHH--HHhCCEEEEEeC
Confidence            3579999999999999999999999999999999999999999988763   8999999999753  588999999963

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=100.00  E-value=5.1e-34  Score=280.05  Aligned_cols=156  Identities=28%  Similarity=0.376  Sum_probs=131.7

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      +.+|+|+||++++||+++|+||||||||||||+|.+     .+|+|.++|... ...++.++|++|              
T Consensus         8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~~~~~~-~~~~~~~~~~~q--------------   67 (176)
T cd03238           8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARLISFLP-KFSRNKLIFIDQ--------------   67 (176)
T ss_pred             eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEECCccc-ccccccEEEEhH--------------
Confidence            568999999999999999999999999999999853     389999988632 222345788877              


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCC
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLVN--PSCLLLDEPTSGLD  269 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~--P~iLlLDEPtsgLD  269 (691)
                                           .++++.++|.. ..+.++     +.||||||||++||++|+.+  |++++|||||+|||
T Consensus        68 ---------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD  121 (176)
T cd03238          68 ---------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH  121 (176)
T ss_pred             ---------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence                                 23567778864 345444     57999999999999999999  99999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeE
Q 005545          270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~i  316 (691)
                      +.++..+.+.|++++++|+|||++||++. .+ +.+|++++|.+|+.
T Consensus       122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~-~~-~~~d~i~~l~~g~~  166 (176)
T cd03238         122 QQDINQLLEVIKGLIDLGNTVILIEHNLD-VL-SSADWIIDFGPGSG  166 (176)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEECCCCC
Confidence            99999999999999878999999999975 44 68999999966544

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=1.3e-34  Score=347.09  Aligned_cols=207  Identities=29%  Similarity=0.483  Sum_probs=192.8

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHH
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      +++++|+.|++||+.+++|+|||||||++|+|+|.. .+++|+++++|.++..     ..++.+||+||+|.+++.+|.+
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~-~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~r  658 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGET-KPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGR  658 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCc-cCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHH
Confidence            899999999999999999999999999999999966 5789999999998853     2678899999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                      |+|.+.+++|   +.++.+.++.++.+++.+||.+.+++.++     .+|||+|||+++|.||+.+|++++|||||+|+|
T Consensus       659 EhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~kRkLs~aialig~p~vi~LDEPstGmD  730 (885)
T KOG0059|consen  659 EHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGNKRRLSFAIALIGDPSVILLDEPSTGLD  730 (885)
T ss_pred             HHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcchhhHHHHHHHhcCCCEEEecCCCCCCC
Confidence            9999998876   56677777889999999999999999875     599999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHHHhhh
Q 005545          270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS  331 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~f~~  331 (691)
                      |.+++.+++++++++++|+.||+|||.+ ++...+|||+.+|.+|++...|+++++...|++
T Consensus       731 P~arr~lW~ii~~~~k~g~aiiLTSHsM-eE~EaLCtR~aImv~G~l~ciGs~q~LKsrfG~  791 (885)
T KOG0059|consen  731 PKARRHLWDIIARLRKNGKAIILTSHSM-EEAEALCTRTAIMVIGQLRCIGSPQELKSRYGS  791 (885)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHHhhhhheeecCeeEEecChHHHHhhcCC
Confidence            9999999999999999888999999995 578999999999999999999999999988875

>PLN03130 ABC transporter C family member; Provisional

Probab=100.00  E-value=6.5e-34  Score=357.67  Aligned_cols=206  Identities=22%  Similarity=0.380  Sum_probs=171.4

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc-eE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS-GK  157 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~-G~  157 (691)
                      .|+++|++|+|+...                  ++.+|+|+|++|++||.++|+||||||||||+++|.|.+ ++.+ |+
T Consensus       614 ~I~~~nvsf~y~~~~------------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~-~~~~GG~  674 (1622)
T PLN03130        614 AISIKNGYFSWDSKA------------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGEL-PPRSDAS  674 (1622)
T ss_pred             ceEEEeeEEEccCCC------------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhh-ccCCCce
Confidence            599999999997321                  235899999999999999999999999999999999977 4678 89


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Cccccccc
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRNSVV  230 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v  230 (691)
                      |.+         ++.++||+|++.++. .||+|||.|+..      .++    ++.+++++..+|       ++..+|.+
T Consensus       675 I~l---------~~~Iayv~Q~p~Lfn-gTIreNI~fg~~------~d~----e~y~~vl~a~~L~~di~~LP~Gd~T~I  734 (1622)
T PLN03130        675 VVI---------RGTVAYVPQVSWIFN-ATVRDNILFGSP------FDP----ERYERAIDVTALQHDLDLLPGGDLTEI  734 (1622)
T ss_pred             EEE---------cCeEEEEcCccccCC-CCHHHHHhCCCc------ccH----HHHHHHHHHhCcHHHHHhCCCcccccc
Confidence            975         457999999999996 599999998632      122    234444444443       55678899


Q ss_pred             cCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA-TLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      |+. ...||||||||++||||+..+|+|++||||||+||+.++.++++ .++.+. +|+|+|++||++.  ..+.+|+|+
T Consensus       735 Ge~-G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii  810 (1622)
T PLN03130        735 GER-GVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRII  810 (1622)
T ss_pred             cCC-CCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEE
Confidence            863 45699999999999999999999999999999999999998874 566554 5799999999974  467899999


Q ss_pred             EecCCeEEEecCHhHHHH
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++++.|+.+++.+
T Consensus       811 ~L~~G~i~e~Gt~~eL~~  828 (1622)
T PLN03130        811 LVHEGMIKEEGTYEELSN  828 (1622)
T ss_pred             EEeCCEEEEeCCHHHHHh
Confidence            999999999999999864

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=100.00  E-value=7.3e-34  Score=279.20  Aligned_cols=145  Identities=30%  Similarity=0.472  Sum_probs=127.6

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHH
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLET  191 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~  191 (691)
                      ++.+++|+ +++++||+++|+||||||||||+|+|+|++ .+++|+|.++|++        ++|++|+..          
T Consensus        12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~--------i~~~~q~~~----------   71 (177)
T cd03222          12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQL-IPNGDNDEWDGIT--------PVYKPQYID----------   71 (177)
T ss_pred             CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCC-CCCCcEEEECCEE--------EEEEcccCC----------
Confidence            35688885 899999999999999999999999999977 4779999999853        788888532          


Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 005545          192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST  271 (691)
Q Consensus       192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~  271 (691)
                                                                    ||||||||++|||+|+.+|++++|||||+|||+.
T Consensus        72 ----------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~  105 (177)
T cd03222          72 ----------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE  105 (177)
T ss_pred             ----------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence                                                          7999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhCC-cEEEEEeCCCchHHHhcCCEEEEecCCeEEEe--cCHh
Q 005545          272 TAQRIVATLRGLARGG-RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS--GRAA  323 (691)
Q Consensus       272 ~~~~i~~~L~~l~~~g-~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~--G~~~  323 (691)
                      ++..+.+.|+++++++ .|||++||++ ..+.++||++++|+++-.++.  |++.
T Consensus       106 ~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~  159 (177)
T cd03222         106 QRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK  159 (177)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence            9999999999998764 9999999996 457779999999998766544  5443

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=100.00  E-value=2.7e-33  Score=326.25  Aligned_cols=207  Identities=25%  Similarity=0.375  Sum_probs=162.5

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      +|+++||+++|..                     +.+|+|+||+|++||++||+||||||||||||+|+|.. .+++|+|
T Consensus         3 ~l~i~~ls~~~~~---------------------~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~-~p~~G~I   60 (635)
T PRK11147          3 LISIHGAWLSFSD---------------------APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEV-LLDDGRI   60 (635)
T ss_pred             EEEEeeEEEEeCC---------------------ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCC-CCCCeEE
Confidence            5899999999962                     35999999999999999999999999999999999976 5779999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH------------------------------Hhhc--CCCCCCH
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYA------------------------------ALLR--LPKKLTR  206 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~------------------------------~~~~--~~~~~~~  206 (691)
                      .++|..       .++|++|++......+|.+++..+                              ..+.  +. ....
T Consensus        61 ~~~~~~-------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~  132 (635)
T PRK11147         61 IYEQDL-------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNL  132 (635)
T ss_pred             EeCCCC-------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCc
Confidence            998731       267777765433334566543211                              0000  00 0000


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005545          207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG  286 (691)
Q Consensus       207 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~  286 (691)
                      .+...+++++++.+|+..  ++.+     ..|||||||||+||++|+.+|+||||||||++||+.++..+.+.|+++.  
T Consensus       133 ~~~~~~~~~~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--  203 (635)
T PRK11147        133 WQLENRINEVLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--  203 (635)
T ss_pred             ccHHHHHHHHHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--
Confidence            123456888999999963  4444     4699999999999999999999999999999999999999999999883  


Q ss_pred             CcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545          287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM  326 (691)
Q Consensus       287 g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~  326 (691)
                       .|||++|||+ ..+.++||++++|++|+++ +.|+.++..
T Consensus       204 -~tvlivsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~~  242 (635)
T PRK11147        204 -GSIIFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQYL  242 (635)
T ss_pred             -CEEEEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence             5999999996 4578899999999999997 568776554

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=6.1e-34  Score=263.45  Aligned_cols=177  Identities=30%  Similarity=0.504  Sum_probs=156.4

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC--CCceEEEECCEeCCh--hccccEEEEccCCCCCCCCCH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG--KFSGKITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTV  188 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~--~~~G~I~~~G~~~~~--~~~~~igyv~Q~~~l~~~lTV  188 (691)
                      ..+|-++|++|.+||++-|||||||||||||.-+.|.+.+  ..+|++++|+++++.  ..+|++|+.+||+.+||+++|
T Consensus        15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphlsV   94 (213)
T COG4136          15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHLSV   94 (213)
T ss_pred             ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccccc
Confidence            4589999999999999999999999999999999997754  469999999999864  568899999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005545          189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL  268 (691)
Q Consensus       189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL  268 (691)
                      .+||.|+.    |..+.-+.+++.+...+++.||....++..     ..||||||-||++-|+|+..|+.++||||+|.|
T Consensus        95 g~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~L  165 (213)
T COG4136          95 GQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQRARVALLRALLAQPKALLLDEPFSRL  165 (213)
T ss_pred             ccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcchHHHHHHHHHHHhCcceeeeCCchhHH
Confidence            99998864    455555677778899999999998777644     479999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHH-hCCcEEEEEeCCCc
Q 005545          269 DSTTAQRIVATLRGLA-RGGRTVITTIHQPS  298 (691)
Q Consensus       269 D~~~~~~i~~~L~~l~-~~g~tii~~~H~p~  298 (691)
                      |..-+.++.+..-.-. ..|..+|.+|||..
T Consensus       166 D~ALR~qfR~wVFs~~r~agiPtv~VTHD~~  196 (213)
T COG4136         166 DVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ  196 (213)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEecccc
Confidence            9999999998877655 46999999999954

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=7.1e-33  Score=267.01  Aligned_cols=141  Identities=47%  Similarity=0.800  Sum_probs=129.1

Q ss_pred             ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHH
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      .+|+++|+++++||+++|+|+||||||||+++|+|.+ ++.+|+|+++|.++..    ..++.++|++|           
T Consensus        13 ~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q-----------   80 (157)
T cd00267          13 TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLL-KPTSGEILIDGKDIAKLPLEELRRRIGYVPQ-----------   80 (157)
T ss_pred             eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-CCCccEEEECCEEcccCCHHHHHhceEEEee-----------
Confidence            5899999999999999999999999999999999987 4679999999987743    34567999998           


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                                                                      |||||+||++||++++.+|++++|||||+|||
T Consensus        81 ------------------------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD  112 (157)
T cd00267          81 ------------------------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLD  112 (157)
T ss_pred             ------------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence                                                            79999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      ..++..+.+.|+++.+.++|+|++||++. .+...||+++++++|+
T Consensus       113 ~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~  157 (157)
T cd00267         113 PASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK  157 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence            99999999999999877899999999964 5777899999999875

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=100.00  E-value=6.7e-33  Score=348.52  Aligned_cols=210  Identities=23%  Similarity=0.396  Sum_probs=170.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|+++|++|+|+..                   .+.+|+|+|+++++||+++|+||||||||||+++|+|.+ ++.+|+|
T Consensus       636 ~i~~~~~~~~~~~~-------------------~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~-~~~~G~i  695 (1522)
T TIGR00957       636 SITVHNATFTWARD-------------------LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM-DKVEGHV  695 (1522)
T ss_pred             cEEEEEeEEEcCCC-------------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC-ccCCcEE
Confidence            69999999999621                   135899999999999999999999999999999999977 4679999


Q ss_pred             EECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHH--HHHHHcCC-CccccccccCCCC
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAE--MVIMELGL-TRCRNSVVGGPLF  235 (691)
Q Consensus       159 ~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~  235 (691)
                      .++|         .++||+|++.++ +.||+||+.|+..      ..+++.++.++  .+.+.+++ ++..+|.+|+ ..
T Consensus       696 ~~~g---------~i~yv~Q~~~l~-~~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~-~g  758 (1522)
T TIGR00957       696 HMKG---------SVAYVPQQAWIQ-NDSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIGE-KG  758 (1522)
T ss_pred             EECC---------EEEEEcCCcccc-CCcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceecC-CC
Confidence            9987         499999999887 4799999988632      12222221111  12233332 3445677775 35


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--hCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA--RGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ..||||||||++||||+..+|++++||||||+||+.++..+.+.+.+..  .+|+|+|++||++.. + ..+|+|++|++
T Consensus       759 ~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~  836 (1522)
T TIGR00957       759 VNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSG  836 (1522)
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecC
Confidence            6799999999999999999999999999999999999999999997642  357999999999753 4 56999999999


Q ss_pred             CeEEEecCHhHHHH
Q 005545          314 GSPIYSGRAAQVMD  327 (691)
Q Consensus       314 G~iv~~G~~~~~~~  327 (691)
                      |++++.|+.+++.+
T Consensus       837 G~i~~~g~~~~l~~  850 (1522)
T TIGR00957       837 GKISEMGSYQELLQ  850 (1522)
T ss_pred             CeEEeeCCHHHHHh
Confidence            99999999998864

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PRK13409 putative ATPase RIL; Provisional

Probab=100.00  E-value=7e-33  Score=318.75  Aligned_cols=186  Identities=28%  Similarity=0.367  Sum_probs=154.7

Q ss_pred             ccccc-cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-----------ECCEeCChh------c
Q 005545          108 KQTRT-VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-----------YNGRQFSSS------L  169 (691)
Q Consensus       108 ~~~~~-~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-----------~~G~~~~~~------~  169 (691)
                      ++|+. ..+|++++ .+++||++||+||||||||||||+|+|.+ .|++|+|.           ++|+++...      .
T Consensus        81 ~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l-~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~  158 (590)
T PRK13409         81 HRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGEL-IPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG  158 (590)
T ss_pred             EEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCc-cCCCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence            34443 35899999 99999999999999999999999999977 46799998           999887431      1


Q ss_pred             cccEEEEccCCCCCCC---CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHH
Q 005545          170 KRKTGFVTQDDVLYPH---LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRV  246 (691)
Q Consensus       170 ~~~igyv~Q~~~l~~~---lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv  246 (691)
                      +..+++.+|.....|.   .||+|++...            +..++++++++.+||.+..++.++     .|||||||||
T Consensus       159 ~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv  221 (590)
T PRK13409        159 EIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRV  221 (590)
T ss_pred             CcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHH
Confidence            2345666665433332   3999988531            123468899999999888887774     6999999999


Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          247 SIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       247 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      +||++|+.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|++. .+..++|++++|+++
T Consensus       222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~  287 (590)
T PRK13409        222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE  287 (590)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence            999999999999999999999999999999999999988 999999999964 678999999999763

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=100.00  E-value=1.8e-32  Score=343.72  Aligned_cols=192  Identities=28%  Similarity=0.417  Sum_probs=157.8

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      +.+|+|+|++|++||+++|+|||||||||||++|+|.+ ++.+|+|.++|         .++||+|++.+++. ||+||+
T Consensus       439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~-~~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI  507 (1490)
T TIGR01271       439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGEL-EPSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNI  507 (1490)
T ss_pred             CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCceEEECC---------EEEEEeCCCccCCc-cHHHHH
Confidence            56999999999999999999999999999999999987 47799999998         39999999999874 999999


Q ss_pred             HHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545          193 SYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg  267 (691)
                      .|+...      ..+...+.     .++.++.+  .+..+|.+|+. ...|||||||||+||||++.+|+++||||||||
T Consensus       508 ~~g~~~------~~~~~~~~~~~~~L~~~l~~l--~~g~~t~vg~~-g~~LSgGqkqRi~lARAl~~~~~illLDep~sa  578 (1490)
T TIGR01271       508 IFGLSY------DEYRYTSVIKACQLEEDIALF--PEKDKTVLGEG-GITLSGGQRARISLARAVYKDADLYLLDSPFTH  578 (1490)
T ss_pred             Hhcccc------chHHHHHHHHHHhHHHHHHhc--cccccccccCc-CCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence            986421      11111111     12223322  33345677753 567999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHH-HHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          268 LDSTTAQRIVAT-LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       268 LD~~~~~~i~~~-L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ||+.++..+.+. ++++. +|+|+|++||++.. + ..||++++|++|++++.|+.+++..
T Consensus       579 LD~~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~~  636 (1490)
T TIGR01271       579 LDVVTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQA  636 (1490)
T ss_pred             CCHHHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHHh
Confidence            999999999974 67765 48999999999753 4 5699999999999999999988863

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.2e-32  Score=260.45  Aligned_cols=215  Identities=31%  Similarity=0.446  Sum_probs=169.8

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .+++++||..|..                     ..-.+||||++.|||+++|+|+|||||||||++|++++ .|++|+|
T Consensus         6 LL~V~~lsk~Yg~---------------------~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl-~p~~G~v   63 (258)
T COG4107           6 LLSVSGLSKLYGP---------------------GKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRL-TPDAGTV   63 (258)
T ss_pred             ceeehhhhhhhCC---------------------CcCccccceeecCCcEEEEEecCCCcHHhHHHHHhccc-CCCCCeE
Confidence            6788888887763                     23578999999999999999999999999999999998 4779999


Q ss_pred             EECC---EeCC-----hh-----ccccEEEEccCCC--CC----CCCCHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHH
Q 005545          159 TYNG---RQFS-----SS-----LKRKTGFVTQDDV--LY----PHLTVLETLSY-AALLRLPKKLTREEKIEQAEMVIM  218 (691)
Q Consensus       159 ~~~G---~~~~-----~~-----~~~~igyv~Q~~~--l~----~~lTV~E~l~~-~~~~~~~~~~~~~~~~~~v~~~l~  218 (691)
                      .|.-   ++..     +.     +|-.-|+|.|+|.  +-    ..-.|.|-+.- +++     .  --..++.+.++++
T Consensus        64 ~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~R-----H--YG~iR~~a~~WL~  136 (258)
T COG4107          64 TYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGAR-----H--YGNIRAEAQDWLE  136 (258)
T ss_pred             EEEcCCCCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhh-----h--hhhHHHHHHHHHH
Confidence            9864   2221     11     2335799999875  22    22234444321 111     1  1234456778999


Q ss_pred             HcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCC
Q 005545          219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQP  297 (691)
Q Consensus       219 ~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p  297 (691)
                      ++.++..+   + +..++..|||++||+.|||-|++.|++.|+||||-|||.+.+..++++++.|..+ |.+++++|||.
T Consensus       137 ~VEI~~~R---i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl  212 (258)
T COG4107         137 EVEIDLDR---I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL  212 (258)
T ss_pred             hcccCccc---c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh
Confidence            99886432   2 2356889999999999999999999999999999999999999999999999875 99999999995


Q ss_pred             chHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          298 SSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       298 ~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                       ..+.-++||.++|++|++++.|-.+++++
T Consensus       213 -~VarLla~rlmvmk~g~vve~GLTDrvLD  241 (258)
T COG4107         213 -AVARLLADRLMVMKQGQVVESGLTDRVLD  241 (258)
T ss_pred             -HHHHHhhhcceeecCCCEecccccccccc
Confidence             45677999999999999999999988854

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.98  E-value=3.3e-32  Score=261.53  Aligned_cols=176  Identities=27%  Similarity=0.420  Sum_probs=155.5

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChh---ccccEEEEccCCCCCCCCCH
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS---LKRKTGFVTQDDVLYPHLTV  188 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~---~~~~igyv~Q~~~l~~~lTV  188 (691)
                      ++.++.++||++.+||.+-|.||||||||||||+|+|++. |.+|+|.++|.++...   .++.+-|+-.++.+=+.+||
T Consensus        14 e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~-p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa   92 (209)
T COG4133          14 ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR-PDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA   92 (209)
T ss_pred             cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC-CCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence            4579999999999999999999999999999999999885 6799999999988642   44667788888888889999


Q ss_pred             HHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 005545          189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL  268 (691)
Q Consensus       189 ~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgL  268 (691)
                      .|||.|.....-.      .....+.+.++.+||....|.+++     .||-||||||+|||-+++.+++.|||||+++|
T Consensus        93 ~ENL~F~~~~~~~------~~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL  161 (209)
T COG4133          93 LENLHFWQRFHGS------GNAATIWEALAQVGLAGLEDLPVG-----QLSAGQQRRVALARLWLSPAPLWILDEPFTAL  161 (209)
T ss_pred             HHHHHHHHHHhCC------CchhhHHHHHHHcCcccccccchh-----hcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence            9999997654311      112467789999999999998886     59999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545          269 DSTTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       269 D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      |......+-.++..-+++|-.||.+||||..
T Consensus       162 Dk~g~a~l~~l~~~H~~~GGiVllttHq~l~  192 (209)
T COG4133         162 DKEGVALLTALMAAHAAQGGIVLLTTHQPLP  192 (209)
T ss_pred             CHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence            9999999999999999889999999999865

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.98  E-value=1.2e-31  Score=301.92  Aligned_cols=210  Identities=30%  Similarity=0.449  Sum_probs=171.4

Q ss_pred             eEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~  157 (691)
                      .+|+++||+++|.                     .+.+|+|+|+++.+|+.+||||+||||||||||+|+|.. .+++|+
T Consensus         2 ~~i~~~~ls~~~g---------------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~-~~~~G~   59 (530)
T COG0488           2 SMITLENLSLAYG---------------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGEL-EPDSGE   59 (530)
T ss_pred             ceEEEeeeEEeeC---------------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCC-cCCCCe
Confidence            3688999999985                     256999999999999999999999999999999999977 477999


Q ss_pred             EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh--c-----------CCCC--------------CCHHHHH
Q 005545          158 ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL--R-----------LPKK--------------LTREEKI  210 (691)
Q Consensus       158 I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~--~-----------~~~~--------------~~~~~~~  210 (691)
                      |...+       -.+++|++|++...+..||.|.+.-+..-  .           ++..              ....+.+
T Consensus        60 i~~~~-------~~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e  132 (530)
T COG0488          60 VTRPK-------GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLE  132 (530)
T ss_pred             EeecC-------CceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchH
Confidence            98753       13599999999999999999987654310  0           0000              0001123


Q ss_pred             HHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEE
Q 005545          211 EQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV  290 (691)
Q Consensus       211 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~ti  290 (691)
                      .+++.++..+|+.+. ++.++     .||||||.||+||++|+.+|++|||||||+.||..+...+-+.|++.  .| |+
T Consensus       133 ~~~~~~L~gLg~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tv  203 (530)
T COG0488         133 ARAEEALLGLGFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TV  203 (530)
T ss_pred             HHHHHHHhcCCCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cE
Confidence            567788888888876 66665     69999999999999999999999999999999999999999999865  46 99


Q ss_pred             EEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545          291 ITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM  326 (691)
Q Consensus       291 i~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~  326 (691)
                      |++||| ...+-++|++|+-++.|++. |.|..+...
T Consensus       204 iiVSHD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~~~  239 (530)
T COG0488         204 IVVSHD-RYFLDNVATHILELDRGKLTPYKGNYSSYL  239 (530)
T ss_pred             EEEeCC-HHHHHHHhhheEEecCCceeEecCCHHHHH
Confidence            999999 67899999999999999865 666655443

>PLN03073 ABC transporter F family; Provisional

Probab=99.97  E-value=7.3e-32  Score=315.77  Aligned_cols=220  Identities=21%  Similarity=0.240  Sum_probs=158.9

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--CC
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--GK  153 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--~~  153 (691)
                      +.-.|+++|++++|..                     +.+|+|+||+|.+||.+||+||||||||||||+|+|+..  .|
T Consensus       174 ~~~~I~i~nls~~y~~---------------------~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p  232 (718)
T PLN03073        174 AIKDIHMENFSISVGG---------------------RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIP  232 (718)
T ss_pred             CceeEEEceEEEEeCC---------------------CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence            4567999999999951                     359999999999999999999999999999999999631  24


Q ss_pred             CceEEEECCEeC-----Ch-------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC-------------
Q 005545          154 FSGKITYNGRQF-----SS-------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK-------------  202 (691)
Q Consensus       154 ~~G~I~~~G~~~-----~~-------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~-------------  202 (691)
                      .+|+|.+.++..     +.             ..++.++|++|++.+... ++.++.........+.             
T Consensus       233 ~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  311 (718)
T PLN03073        233 KNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKR  311 (718)
T ss_pred             CCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHH
Confidence            578887655432     10             012235666665432211 1111110000000000             


Q ss_pred             --CCCHHHHHHHHHHHHHHcCCC-ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 005545          203 --KLTREEKIEQAEMVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT  279 (691)
Q Consensus       203 --~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~  279 (691)
                        ........+++.++++.+|+. +..++.+     ..|||||||||+||++|+.+|++|||||||++||+.+...+.+.
T Consensus       312 ~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~-----~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~  386 (718)
T PLN03073        312 LELIDAYTAEARAASILAGLSFTPEMQVKAT-----KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETY  386 (718)
T ss_pred             HHhcCcchHHHHHHHHHHHCCCChHHHhCch-----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence              000112334667788888885 3445555     46999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545          280 LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM  326 (691)
Q Consensus       280 L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~  326 (691)
                      |+++   +.|||++|||. ..+..+||++++|++|+++ |.|+.++..
T Consensus       387 L~~~---~~tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~~  430 (718)
T PLN03073        387 LLKW---PKTFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDTFE  430 (718)
T ss_pred             HHHc---CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence            9887   67999999995 5678899999999999996 678766543

>PTZ00243 ABC transporter; Provisional

Probab=99.97  E-value=2.5e-31  Score=333.87  Aligned_cols=195  Identities=29%  Similarity=0.375  Sum_probs=154.3

Q ss_pred             cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHH
Q 005545          111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLE  190 (691)
Q Consensus       111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E  190 (691)
                      +.+.+|+|+|++|++||+++|+|||||||||||++|+|.+ .+.+|+|.++         +.++||+|++.++ +.||+|
T Consensus       671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~-~~~~G~i~~~---------~~i~yv~Q~~~l~-~~Tv~e  739 (1560)
T PTZ00243        671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQF-EISEGRVWAE---------RSIAYVPQQAWIM-NATVRG  739 (1560)
T ss_pred             CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCC-CCCCcEEEEC---------CeEEEEeCCCccC-CCcHHH
Confidence            3457999999999999999999999999999999999987 4679999863         4699999999887 479999


Q ss_pred             HHHHHHhhcCCCCCCHHHHH-----HHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005545          191 TLSYAALLRLPKKLTREEKI-----EQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT  265 (691)
Q Consensus       191 ~l~~~~~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt  265 (691)
                      |+.|+..      ...+...     ..+++.++.+  .+..++.+|. ....|||||||||+|||||+.+|++++|||||
T Consensus       740 nI~~~~~------~~~~~~~~~~~~~~l~~~l~~l--~~g~~t~i~~-~g~~LSGGQkqRvaLARAl~~~p~illLDEP~  810 (1560)
T PTZ00243        740 NILFFDE------EDAARLADAVRVSQLEADLAQL--GGGLETEIGE-KGVNLSGGQKARVSLARAVYANRDVYLLDDPL  810 (1560)
T ss_pred             HHHcCCh------hhHHHHHHHHHHhhhHHHHHHh--hccchHHhcC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence            9987521      1111111     1223344444  1223444543 34679999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ++||+.++..+++.+.....+|+|+|++||++..  .+.+|+|++|++|++++.|+.+++.+
T Consensus       811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~--~~~ad~ii~l~~G~i~~~G~~~~l~~  870 (1560)
T PTZ00243        811 SALDAHVGERVVEECFLGALAGKTRVLATHQVHV--VPRADYVVALGDGRVEFSGSSADFMR  870 (1560)
T ss_pred             ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH--HHhCCEEEEEECCEEEEecCHHHHHh
Confidence            9999999999987543222358999999999743  46899999999999999999988753

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=1.4e-30  Score=266.19  Aligned_cols=189  Identities=25%  Similarity=0.377  Sum_probs=135.2

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHH-HHHHcCCCCCCceEEEEC-----------C-EeCCh--hcc-ccEEEE
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLL-TALAGRLRGKFSGKITYN-----------G-RQFSS--SLK-RKTGFV  176 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL-~~L~G~~~~~~~G~I~~~-----------G-~~~~~--~~~-~~igyv  176 (691)
                      ..+|+|+||++++||+++|+|+||||||||+ ..+..      +|++.+.           | ....+  ..+ ...++.
T Consensus         8 ~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (226)
T cd03270           8 EHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA------EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA   81 (226)
T ss_pred             hhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH------HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence            4689999999999999999999999999996 44431      2222110           0 00000  111 234444


Q ss_pred             ccCCC--CCCCCCHHH---HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHH
Q 005545          177 TQDDV--LYPHLTVLE---TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQ  250 (691)
Q Consensus       177 ~Q~~~--l~~~lTV~E---~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~  250 (691)
                      .|++.  ..+..+|..   ...+...+.     ......++ .+.++.++|.+ ..+..+     ..|||||||||+||+
T Consensus        82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~lar  150 (226)
T cd03270          82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLAT  150 (226)
T ss_pred             ecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHH
Confidence            44432  344556543   222211111     11112223 46799999975 355554     579999999999999


Q ss_pred             HHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEec
Q 005545          251 EMLVNP--SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSG  320 (691)
Q Consensus       251 aL~~~P--~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G  320 (691)
                      +|+.+|  ++|+|||||+|||+.++..+.+.|++++++|.|||++||++. .+ +.||++++|      ++|+++++|
T Consensus       151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g  226 (226)
T cd03270         151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG  226 (226)
T ss_pred             HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence            999998  599999999999999999999999999888999999999975 44 699999999      999999986

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.3e-31  Score=249.95  Aligned_cols=214  Identities=29%  Similarity=0.423  Sum_probs=175.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      +..|..+||++++....+..              -...+|+|+||+++.||++++=||||||||||||+|-|.+ .+++|
T Consensus         2 ~~~l~v~~~~KtFtlH~q~G--------------i~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY-~~d~G   66 (235)
T COG4778           2 PTPLNVSNVSKTFTLHQQGG--------------VRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANY-LPDEG   66 (235)
T ss_pred             CceeeeecchhheEeeecCC--------------EEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhcc-CCCCc
Confidence            34688899998887654321              1346999999999999999999999999999999999976 57899


Q ss_pred             EEEECCEe--CC-----h----h-ccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 005545          157 KITYNGRQ--FS-----S----S-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR  224 (691)
Q Consensus       157 ~I~~~G~~--~~-----~----~-~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~  224 (691)
                      +|++.-..  ++     .    + .++.+|||.|--...|..+..|-+.-.+..   .+.+.+....++.+++.++++++
T Consensus        67 ~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~---~gv~~~~a~~~a~~Ll~rLnlpe  143 (235)
T COG4778          67 QILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLA---RGVPREVARAKAADLLTRLNLPE  143 (235)
T ss_pred             eEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHH---cCCCHHHHHHHHHHHHHHcCCCH
Confidence            99986432  11     1    2 245799999988888887777766554432   35677888889999999999988


Q ss_pred             cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhc
Q 005545          225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       225 ~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~  304 (691)
                      .......    ...||||+|||.|||.++.+-+||+|||||+.||..+++.++++|++-+.+|..+|=+-|| .+.-...
T Consensus       144 rLW~LaP----aTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHD-eevre~v  218 (235)
T COG4778         144 RLWSLAP----ATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHD-EEVREAV  218 (235)
T ss_pred             HHhcCCC----cccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeecc-HHHHHHH
Confidence            7766543    4689999999999999999999999999999999999999999999988899999999999 4444568


Q ss_pred             CCEEEEecC
Q 005545          305 FDKVVVLSE  313 (691)
Q Consensus       305 ~D~v~~L~~  313 (691)
                      +||++-+..
T Consensus       219 adR~~~~~~  227 (235)
T COG4778         219 ADRLLDVSA  227 (235)
T ss_pred             hhheeeccc
Confidence            999998864

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=1.1e-30  Score=314.72  Aligned_cols=219  Identities=27%  Similarity=0.379  Sum_probs=182.2

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      ..-.|+|+|++.+|....                   ..+|+|||++|+|||.+||+|..|||||||+++|-.+. .+.+
T Consensus      1135 ~~G~I~f~~~~~RYrp~l-------------------p~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~-e~~~ 1194 (1381)
T KOG0054|consen 1135 SKGEIEFEDLSLRYRPNL-------------------PLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV-EPAE 1194 (1381)
T ss_pred             CCCeEEEEEeEEEeCCCC-------------------cchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc-CccC
Confidence            334799999999998432                   35999999999999999999999999999999999866 4679


Q ss_pred             eEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHH-----HHHHHHHcCCCccc
Q 005545          156 GKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCR  226 (691)
Q Consensus       156 G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~  226 (691)
                      |+|.|||.++.+    ++|++++.+||||.+|.. |||.||.=.      ...++++..+.     .++.++  .++...
T Consensus      1195 G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf------~e~sD~~IW~ALe~~~Lk~~v~--~~p~~L 1265 (1381)
T KOG0054|consen 1195 GEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPF------DEYSDDEIWEALERCQLKDVVS--SLPGGL 1265 (1381)
T ss_pred             CeEEEcCeecccccHHHHHhcCeeeCCCCceecC-ccccccCcc------cccCHHHHHHHHHHhChHHHHh--hCCcCC
Confidence            999999999975    689999999999999975 999998621      12234433322     233333  334456


Q ss_pred             cccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCC
Q 005545          227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       227 ~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                      |+.+.+ ....+|-||||-+++||||+++.+||+|||.|++.|+.|-..|-++||+-=+ ++|||.+.|+... + --+|
T Consensus      1266 d~~v~e-gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~-dcTVltIAHRl~T-V-md~D 1341 (1381)
T KOG0054|consen 1266 DSEVSE-GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK-DCTVLTIAHRLNT-V-MDSD 1341 (1381)
T ss_pred             CceecC-CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc-CCeEEEEeeccch-h-hhcC
Confidence            777754 3456999999999999999999999999999999999999999999998544 6999999999875 3 4689


Q ss_pred             EEEEecCCeEEEecCHhHHHH
Q 005545          307 KVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       307 ~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      ||+||++|+++++|+|.++++
T Consensus      1342 rVlVld~G~v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1342 RVLVLDAGRVVEFDSPAELLS 1362 (1381)
T ss_pred             eEEEeeCCeEeecCChHHHHh
Confidence            999999999999999999975

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.97  E-value=6.6e-30  Score=307.85  Aligned_cols=209  Identities=26%  Similarity=0.436  Sum_probs=172.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      ...++++|.+++.+...                  ....|+|+|++|++|+++||+|+-|||||+||.+|.|.++ ..+|
T Consensus       516 ~~~i~i~~~sfsW~~~~------------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~-~~sG  576 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSES------------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP-KLSG  576 (1381)
T ss_pred             CceEEEeeeeEecCCCC------------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc-cccc
Confidence            34689999999987421                  1237999999999999999999999999999999999884 6799


Q ss_pred             EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCC-------Ccccccc
Q 005545          157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL-------TRCRNSV  229 (691)
Q Consensus       157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~  229 (691)
                      +|.++|.         ++||+|++-++. -||+|||.|+..+      .++    +.+++++.-.|       +..-.|.
T Consensus       577 ~v~v~gs---------iaYv~Q~pWI~n-gTvreNILFG~~~------d~~----rY~~Vi~aC~L~~Dle~Lp~GD~Te  636 (1381)
T KOG0054|consen  577 SVAVNGS---------VAYVPQQPWIQN-GTVRENILFGSPY------DEE----RYDKVIKACALKKDLEILPFGDLTE  636 (1381)
T ss_pred             eEEEcCe---------EEEeccccHhhC-CcHHHhhhcCccc------cHH----HHHHHHHHccCHhHHhhcCCCCcce
Confidence            9999984         999999999884 6999999997532      222    33344444433       4556778


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +|+ ..-.||||||||+++|||+-++++|++||.|.|++|+++..+|.+..-...-++||+|++|||.  +..+.+|.|+
T Consensus       637 IGE-rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql--~~L~~ad~Ii  713 (1381)
T KOG0054|consen  637 IGE-RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQL--QFLPHADQII  713 (1381)
T ss_pred             ecC-CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCch--hhhhhCCEEE
Confidence            886 3345999999999999999999999999999999999999999865554444589999999984  3568999999


Q ss_pred             EecCCeEEEecCHhHHHH
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 ~L~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++.+.|+.+|+.+
T Consensus       714 vl~~G~I~~~Gty~el~~  731 (1381)
T KOG0054|consen  714 VLKDGKIVESGTYEELLK  731 (1381)
T ss_pred             EecCCeEecccCHHHHHh
Confidence            999999999999999983

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.97  E-value=1.5e-30  Score=244.21  Aligned_cols=133  Identities=47%  Similarity=0.752  Sum_probs=119.0

Q ss_pred             eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 005545          116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLET  191 (691)
Q Consensus       116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~  191 (691)
                      |+|+|+++++||+++|+|+||||||||+++|+|.. .+.+|+|.++|+++..    ..++.++|++|++.+++.+||+|+
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~-~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~   79 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLL-PPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN   79 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSS-HESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeecccc-cccccccccccccccccccccccccccccccccccccccccccc
Confidence            78999999999999999999999999999999976 4679999999999864    457799999999999999999999


Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 005545          192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS  266 (691)
Q Consensus       192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPts  266 (691)
                                      ...++++++++.+++.+..++.++... ..|||||||||+||+||+.+|++++|||||+
T Consensus        80 ----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~-~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   80 ----------------ESDERIEEVLKKLGLEDLLDRKIGQRA-SSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             ----------------HHHHHHHHHHHHTTHGGGTGSBGTSCG-GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ----------------ccccccccccccccccccccccccccc-chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence                            223468889999999888888876533 7899999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.97  E-value=2.3e-29  Score=261.39  Aligned_cols=193  Identities=23%  Similarity=0.357  Sum_probs=152.1

Q ss_pred             ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHH-----cCCC-----C----------CCceEEEECCEeCChhccc--
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALA-----GRLR-----G----------KFSGKITYNGRQFSSSLKR--  171 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~-----G~~~-----~----------~~~G~I~~~G~~~~~~~~~--  171 (691)
                      .-|+|||..|+.|++++|.|+||||||||++.+.     ..+.     +          ..+--|.++..++....|.  
T Consensus         9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~   88 (261)
T cd03271           9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP   88 (261)
T ss_pred             hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence            4699999999999999999999999999998552     1110     0          1122477777776421111  


Q ss_pred             ----------------------------cEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545          172 ----------------------------KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       172 ----------------------------~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~  223 (691)
                                                  .+.|..++...+..+||.|++.|...+.         ..+++.++++.+||.
T Consensus        89 ~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL~  159 (261)
T cd03271          89 ATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGLG  159 (261)
T ss_pred             HHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCCc
Confidence                                        2445555655667899999998875431         124567799999998


Q ss_pred             c-cccccccCCCCcccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545          224 R-CRNSVVGGPLFRGISGGERKRVSIGQEMLVN---PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       224 ~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      + ..+..+     +.||||||||+.||++|+.+   |++++|||||+|||+.....+.+.|++++++|.|||+++|++. 
T Consensus       160 ~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~-  233 (261)
T cd03271         160 YIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD-  233 (261)
T ss_pred             hhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-
Confidence            6 355544     57999999999999999996   7999999999999999999999999999988999999999974 


Q ss_pred             HHHhcCCEEEEe------cCCeEEEecCH
Q 005545          300 RLYRMFDKVVVL------SEGSPIYSGRA  322 (691)
Q Consensus       300 ~i~~~~D~v~~L------~~G~iv~~G~~  322 (691)
                      .+ +.+|+++.|      ++|++++.|++
T Consensus       234 ~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~  261 (261)
T cd03271         234 VI-KCADWIIDLGPEGGDGGGQVVASGTP  261 (261)
T ss_pred             HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence            34 679999999      89999999864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=1.5e-28  Score=271.07  Aligned_cols=200  Identities=27%  Similarity=0.448  Sum_probs=171.0

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCC---CCCCCC
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDD---VLYPHL  186 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~---~l~~~l  186 (691)
                      .++|+||++++||+++|-|-=|||+|-|+++|.|.. +..+|+|.+||+++..     ..+..++||+.|.   .++..+
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~-~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~  352 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGAR-PASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM  352 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCC-cCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC
Confidence            478999999999999999999999999999999954 5679999999998742     4667999999874   488999


Q ss_pred             CHHHHHHHHHhhcCC-C-CCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005545          187 TVLETLSYAALLRLP-K-KLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDE  263 (691)
Q Consensus       187 TV~E~l~~~~~~~~~-~-~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE  263 (691)
                      +|.||+.++...+.. . -.++....+.+++..+.+++.- ..+..+     ..||||.+|||.|||.|..+|++|||||
T Consensus       353 sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v-----~~LSGGNQQKVvlarwL~~~p~vLilDE  427 (500)
T COG1129         353 SIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPI-----GTLSGGNQQKVVLARWLATDPKVLILDE  427 (500)
T ss_pred             cHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchh-----hcCCchhhhhHHHHHHHhcCCCEEEECC
Confidence            999999887332322 1 2455555667889999998852 233444     5799999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecC
Q 005545          264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR  321 (691)
Q Consensus       264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~  321 (691)
                      ||.|.|.-++.+|.+++++|+++|++||++|-+. +++..+||||++|++|+++..=+
T Consensus       428 PTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl-pEll~~~DRIlVm~~Gri~~e~~  484 (500)
T COG1129         428 PTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL-PELLGLSDRILVMREGRIVGELD  484 (500)
T ss_pred             CCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh-HHHHhhCCEEEEEECCEEEEEec
Confidence            9999999999999999999999999999999995 67899999999999999986433

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.96  E-value=5.3e-30  Score=242.79  Aligned_cols=195  Identities=30%  Similarity=0.473  Sum_probs=168.5

Q ss_pred             eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCHHHH
Q 005545          116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLET  191 (691)
Q Consensus       116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~  191 (691)
                      |-.+|+.+..||++-++|||||||||||-.++|++  +.+|+|.++|+++..    ++.+.-+|..|+..-...|-|..+
T Consensus        15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~--~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y   92 (248)
T COG4138          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY   92 (248)
T ss_pred             ccccccccccceEEEEECCCCccHHHHHHHHhCCC--CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence            67899999999999999999999999999999976  459999999999864    566778899988765556888888


Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh-----CC--CEEEEeCC
Q 005545          192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV-----NP--SCLLLDEP  264 (691)
Q Consensus       192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~-----~P--~iLlLDEP  264 (691)
                      |..    ..    +.++....++++...++|.+...+.+     ..|||||.|||-+|...+.     ||  ++|+||||
T Consensus        93 L~L----~q----P~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP  159 (248)
T COG4138          93 LTL----HQ----PDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP  159 (248)
T ss_pred             hhh----cC----chHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence            754    22    33556667889999999998877665     4699999999999977663     45  69999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          265 TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       265 tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      .++||...+..+-++|.+++++|.+||++.||.+. ..+.+|++++|++|+++..|..+|++
T Consensus       160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl  220 (248)
T COG4138         160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL  220 (248)
T ss_pred             CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence            99999999999999999999999999999999764 67899999999999999999999985

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.96  E-value=2.4e-28  Score=275.33  Aligned_cols=206  Identities=30%  Similarity=0.449  Sum_probs=169.4

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      ....++++|+++.|..                    .+.+++|+||.|.+|+.+||+||||+|||||||+|+|.. ++.+
T Consensus       318 g~~vl~~~~~~~~y~~--------------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~-~~~~  376 (530)
T COG0488         318 GKLVLEFENVSKGYDG--------------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGEL-GPLS  376 (530)
T ss_pred             CCeeEEEeccccccCC--------------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhc-ccCC
Confidence            4568999999999962                    146999999999999999999999999999999999976 4669


Q ss_pred             eEEEECCEeCChhccccEEEEccCC-CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCC
Q 005545          156 GKITYNGRQFSSSLKRKTGFVTQDD-VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGP  233 (691)
Q Consensus       156 G~I~~~G~~~~~~~~~~igyv~Q~~-~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~  233 (691)
                      |+|.+.-       .-.+||..|+. .+.+..|+.|++.-..    |. ..    ...+...|..+++.. ...+++   
T Consensus       377 G~v~~g~-------~v~igyf~Q~~~~l~~~~t~~d~l~~~~----~~-~~----e~~~r~~L~~f~F~~~~~~~~v---  437 (530)
T COG0488         377 GTVKVGE-------TVKIGYFDQHRDELDPDKTVLEELSEGF----PD-GD----EQEVRAYLGRFGFTGEDQEKPV---  437 (530)
T ss_pred             ceEEeCC-------ceEEEEEEehhhhcCccCcHHHHHHhhC----cc-cc----HHHHHHHHHHcCCChHHHhCch---
Confidence            9998742       23599999986 4557889999886321    11 11    456788999999964 334555   


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                        +.||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.+..   -|||++||| ...+.+++++++.+.+
T Consensus       438 --~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~---Gtvl~VSHD-r~Fl~~va~~i~~~~~  511 (530)
T COG0488         438 --GVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE---GTVLLVSHD-RYFLDRVATRIWLVED  511 (530)
T ss_pred             --hhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC---CeEEEEeCC-HHHHHhhcceEEEEcC
Confidence              4699999999999999999999999999999999999999999998873   599999999 4679999999999998


Q ss_pred             CeEE-EecCHhHHHHH
Q 005545          314 GSPI-YSGRAAQVMDY  328 (691)
Q Consensus       314 G~iv-~~G~~~~~~~~  328 (691)
                       ++. +.|..++..+.
T Consensus       512 -~~~~~~g~y~~y~~~  526 (530)
T COG0488         512 -KVEEFEGGYEDYLEQ  526 (530)
T ss_pred             -ceeEcCCCHHHHHHh
Confidence             554 44777665543

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.96  E-value=1.3e-28  Score=246.57  Aligned_cols=164  Identities=18%  Similarity=0.287  Sum_probs=130.6

Q ss_pred             eceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC--------CCCceEEEECCEeCCh-hccccEEEEccCCCCCCCCC
Q 005545          117 NGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR--------GKFSGKITYNGRQFSS-SLKRKTGFVTQDDVLYPHLT  187 (691)
Q Consensus       117 ~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~--------~~~~G~I~~~G~~~~~-~~~~~igyv~Q~~~l~~~lT  187 (691)
                      +++++++++| +++|+||||||||||+++|+|++.        .+..|++.++|++... ..++.++||+|++..+    
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~----   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR----   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence            6789999999 999999999999999999998752        1224578888877643 3356899999998766    


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML----VNPSCLLLDE  263 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDE  263 (691)
                            |..  .     .    .++++++++.   .+..++.+     +.||||||||++||++|+    .+|++++|||
T Consensus        89 ------~~~--~-----~----~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE  143 (197)
T cd03278          89 ------YSI--I-----S----QGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE  143 (197)
T ss_pred             ------eeE--E-----e----hhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence                  110  0     0    2355666666   33445444     569999999999999997    4669999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ||+|||+..+..+.+.|+++++ +.|||++||++. . .+.+|+++.+..
T Consensus       144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~-~~~~d~v~~~~~  190 (197)
T cd03278         144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-T-MEAADRLYGVTM  190 (197)
T ss_pred             CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-H-HhhcceEEEEEe
Confidence            9999999999999999999976 689999999974 3 478999999975

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.95  E-value=2.8e-27  Score=243.96  Aligned_cols=189  Identities=19%  Similarity=0.294  Sum_probs=134.7

Q ss_pred             ccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC---------------CCCce--------EEEECCEe
Q 005545          108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR---------------GKFSG--------KITYNGRQ  164 (691)
Q Consensus       108 ~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~---------------~~~~G--------~I~~~G~~  164 (691)
                      |+|+.+.++++++     |++++|+||||||||||+++|++.+.               .+.+|        +|.+++.+
T Consensus        10 ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~   84 (243)
T cd03272          10 KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSD   84 (243)
T ss_pred             cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCC
Confidence            4455667888887     78999999999999999999984320               12234        66665532


Q ss_pred             ----CC-h--hccccEEEEccCCCCCC-CCCHHHHHHHHHhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCC
Q 005545          165 ----FS-S--SLKRKTGFVTQDDVLYP-HLTVLETLSYAALLRLPKKLTRE-EKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       165 ----~~-~--~~~~~igyv~Q~~~l~~-~lTV~E~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                          +. .  ..++.++|++|+..+++ ..|..|...+.....+....... ....+   +.+.+++.+..+..+     
T Consensus        85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~---i~~l~~l~~~~~~~~-----  156 (243)
T cd03272          85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGK---INSLTNMKQDEQQEM-----  156 (243)
T ss_pred             CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCc---hHHhhhccccccccc-----
Confidence                11 1  35677999999888877 46777766555443322110000 00112   233344444444433     


Q ss_pred             cccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          236 RGISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      +.||||||||++||++|+.    +|+++++||||+|||+.++..+.+.|+++++ ++++|+++|++  ++.+.||++++|
T Consensus       157 ~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l  233 (243)
T cd03272         157 QQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGV  233 (243)
T ss_pred             cccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEE
Confidence            5799999999999999974    5899999999999999999999999999976 78899999984  467999999998


Q ss_pred             c
Q 005545          312 S  312 (691)
Q Consensus       312 ~  312 (691)
                      .
T Consensus       234 ~  234 (243)
T cd03272         234 K  234 (243)
T ss_pred             E
Confidence            5

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=2.5e-28  Score=247.19  Aligned_cols=182  Identities=15%  Similarity=0.182  Sum_probs=137.0

Q ss_pred             ccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCC
Q 005545          108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLT  187 (691)
Q Consensus       108 ~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lT  187 (691)
                      |+++.+.+++++++     ++++|+||||||||||+++|.-           ++|.+.....++++++++|+..+++.+|
T Consensus        12 k~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~-----------~~G~~~~~~~~~~i~~~~~~~~~~~~~~   75 (212)
T cd03274          12 KSYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLF-----------VFGFRASKMRQKKLSDLIHNSAGHPNLD   75 (212)
T ss_pred             ccCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHH-----------HhccCHHHhhhhhHHHHhcCCCCCCCCc
Confidence            34556779999987     8999999999999999999972           2233222222357999999998999999


Q ss_pred             HHHHHHHHHhhcC-----CCCCCHHHHHH--HHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh----CC
Q 005545          188 VLETLSYAALLRL-----PKKLTREEKIE--QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV----NP  256 (691)
Q Consensus       188 V~E~l~~~~~~~~-----~~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~----~P  256 (691)
                      +.|.+.+......     -.....++...  ..+++++.++|++..++.+     +.||+|||||++||++++.    +|
T Consensus        76 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~-----~~lS~G~~~r~~la~al~~~~~~~p  150 (212)
T cd03274          76 SCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNI-----SNLSGGEKTLSSLALVFALHHYKPT  150 (212)
T ss_pred             eEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccch-----hhcCHHHHHHHHHHHHHHhcccCCC
Confidence            9997765432210     00111111110  1255667778877777765     4699999999999999974    47


Q ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          257 SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       257 ~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      +++++||||+|||+.++..+.+.|+++++ +.|+|++||++  ++.+.||++++|..
T Consensus       151 ~ililDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~  204 (212)
T cd03274         151 PLYVMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK  204 (212)
T ss_pred             CEEEEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence            99999999999999999999999999865 57888888994  57899999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.94  E-value=4.2e-27  Score=244.30  Aligned_cols=183  Identities=17%  Similarity=0.198  Sum_probs=135.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCE-eCCh------hccccEEEEccCC---------CCCCCCCHH
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-QFSS------SLKRKTGFVTQDD---------VLYPHLTVL  189 (691)
Q Consensus       126 Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~-~~~~------~~~~~igyv~Q~~---------~l~~~lTV~  189 (691)
                      ..+++|+||||||||||+++|++.+.+...|++.+.|. ++-.      ..+..+++++|++         .+.+.+||.
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~  104 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVT  104 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEE
Confidence            44999999999999999999999874333578888776 3211      1234799999985         346688999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc---------------cccCCCCcccCHHHHHHHHHHHHHh-
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS---------------VVGGPLFRGISGGERKRVSIGQEML-  253 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------------~vg~~~~~~LSGGerqRv~IA~aL~-  253 (691)
                      +++......+.... .+....+++.++++.+|+......               ..-+..++.||||||||++||++|+ 
T Consensus       105 r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~  183 (251)
T cd03273         105 RQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILAL  183 (251)
T ss_pred             EEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHH
Confidence            88765432111000 122234678889999998611000               0111234679999999999999998 


Q ss_pred             ---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          254 ---VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       254 ---~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                         .+|+++++||||+|||+..+..+.+.|+++++ |.|+|++||++  ++.+.||+++-+.
T Consensus       184 ~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~-g~~ii~iSH~~--~~~~~~d~v~~~~  242 (251)
T cd03273         184 LLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK-GSQFIVVSLKE--GMFNNANVLFRTR  242 (251)
T ss_pred             hhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECCH--HHHHhCCEEEEEE
Confidence               57899999999999999999999999999964 88999999994  5678899998775

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.93  E-value=4e-25  Score=239.52  Aligned_cols=222  Identities=24%  Similarity=0.354  Sum_probs=186.7

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .++.|+++||+..-..                    ....++||||++++||+++|.|-.|-|-+.|+.+|+|+. ++.+
T Consensus       254 g~~vL~V~~L~v~~~~--------------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr-~~~~  312 (501)
T COG3845         254 GEVVLEVEDLSVKDRR--------------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLR-KPAS  312 (501)
T ss_pred             CCeEEEEeeeEeecCC--------------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCC-ccCC
Confidence            4678999999876542                    135799999999999999999999999999999999965 3557


Q ss_pred             eEEEECCEeC-C---h--hccccEEEEccCCC---CCCCCCHHHHHHHHHhhcC----CCCCCHHHHHHHHHHHHHHcCC
Q 005545          156 GKITYNGRQF-S---S--SLKRKTGFVTQDDV---LYPHLTVLETLSYAALLRL----PKKLTREEKIEQAEMVIMELGL  222 (691)
Q Consensus       156 G~I~~~G~~~-~---~--~~~~~igyv~Q~~~---l~~~lTV~E~l~~~~~~~~----~~~~~~~~~~~~v~~~l~~lgL  222 (691)
                      |+|.++|+++ .   .  ..+..++|||+|..   +-+.+|+.||+.+....+-    ..-....+..+.+++++++++.
T Consensus       313 G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdV  392 (501)
T COG3845         313 GRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDV  392 (501)
T ss_pred             ceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCc
Confidence            9999999996 2   2  23458999999864   7789999999987653221    1124566777888999999988


Q ss_pred             Ccc-ccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH
Q 005545          223 TRC-RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRL  301 (691)
Q Consensus       223 ~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i  301 (691)
                      ... .++     ..+.||||++||+-+||+|..+|++|++.+||.|||..+.+.|.+.|.+++++|+.|++++-+. +++
T Consensus       393 r~~~~~~-----~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dL-DEi  466 (501)
T COG3845         393 RAPSPDA-----PARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDL-DEI  466 (501)
T ss_pred             cCCCCCc-----chhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhH-HHH
Confidence            622 222     2467999999999999999999999999999999999999999999999999999999999995 679


Q ss_pred             HhcCCEEEEecCCeEEEecCHhH
Q 005545          302 YRMFDKVVVLSEGSPIYSGRAAQ  324 (691)
Q Consensus       302 ~~~~D~v~~L~~G~iv~~G~~~~  324 (691)
                      +.++|||.+|++|+++...++++
T Consensus       467 l~lsDrIaVi~~Gri~~~~~~~~  489 (501)
T COG3845         467 LELSDRIAVIYEGRIVGIVPPEE  489 (501)
T ss_pred             HHhhheeeeeeCCceeccccccc
Confidence            99999999999999998887765

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.93  E-value=1.4e-25  Score=227.32  Aligned_cols=179  Identities=20%  Similarity=0.198  Sum_probs=126.2

Q ss_pred             eceEEEEe-CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECC--EeCC-hhccccEEEEccCCCCCCCCCHHHHH
Q 005545          117 NGVSGMVK-PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG--RQFS-SSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       117 ~~vs~~i~-~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G--~~~~-~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      ++++|... +|++++|+||||||||||+++|++.+.++..+....+.  ..+. ...+..+++++|++...  .++.+. 
T Consensus        18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~--~~~~r~-   94 (213)
T cd03279          18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKK--YRVERS-   94 (213)
T ss_pred             eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeE--EEEEEe-
Confidence            45566543 58999999999999999999999755444344444321  0111 13345799999986421  111111 


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh----------CCCEEEEe
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV----------NPSCLLLD  262 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~----------~P~iLlLD  262 (691)
                              + ..+.++..+.+  .++..++.+..+..+     ..||||||||++||++|+.          +|++++||
T Consensus        95 --------~-gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD  158 (213)
T cd03279          95 --------R-GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFID  158 (213)
T ss_pred             --------c-CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence                    1 22332222211  233333444444443     5699999999999999985          57899999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          263 EPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       263 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      |||+|||+.+...+.+.|++++++|+|||++||++. .+...+|+++++++|.
T Consensus       159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~  210 (213)
T cd03279         159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG  210 (213)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence            999999999999999999999877899999999974 5778999999999874

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.93  E-value=8.7e-25  Score=270.11  Aligned_cols=138  Identities=25%  Similarity=0.362  Sum_probs=113.2

Q ss_pred             CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccccccCCCCcccCHHHHHHHHHHHHHh---hCCC
Q 005545          182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-RNSVVGGPLFRGISGGERKRVSIGQEML---VNPS  257 (691)
Q Consensus       182 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~---~~P~  257 (691)
                      .+...||.|+|.++..-........++..+++ ++++.+||.+. .+..+     ..||||||||++||++|+   .+|+
T Consensus       759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~  832 (1809)
T PRK00635        759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT  832 (1809)
T ss_pred             ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence            56678999999886542211112234445566 48899999865 56554     469999999999999998   6999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec------CCeEEEecCHhHHHH
Q 005545          258 CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS------EGSPIYSGRAAQVMD  327 (691)
Q Consensus       258 iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~  327 (691)
                      +|||||||+|||+.+...+++.|++++++|.|||+++|++. .+ +.+|++++|.      +|+++..|+++++..
T Consensus       833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~  906 (1809)
T PRK00635        833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH  906 (1809)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence            99999999999999999999999999988999999999975 45 8999999996      799999999998754

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.93  E-value=1.1e-25  Score=226.62  Aligned_cols=165  Identities=19%  Similarity=0.285  Sum_probs=124.7

Q ss_pred             ceEEEEeCCeEEEEEcCCCCcHHHHHHHHH----cCCCCCCceEEEECCEeCCh-hccccEEEEccCC-----CCCCCCC
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALA----GRLRGKFSGKITYNGRQFSS-SLKRKTGFVTQDD-----VLYPHLT  187 (691)
Q Consensus       118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~----G~~~~~~~G~I~~~G~~~~~-~~~~~igyv~Q~~-----~l~~~lT  187 (691)
                      ..++++.+| +++|+|||||||||||++|.    |.. .+.+|.+..+...+.. ..+..+++++|++     .....+|
T Consensus        15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~-~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~   92 (204)
T cd03240          15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGEL-PPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLA   92 (204)
T ss_pred             ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCC-CcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhh
Confidence            344667788 99999999999999999995    755 3445655522222221 3455799999987     3455568


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHH------HHHHHHHhhCCCEEEE
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKR------VSIGQEMLVNPSCLLL  261 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR------v~IA~aL~~~P~iLlL  261 (691)
                      +.|++.+.         ...    .+++.+         +.     .++.||+|||||      ++||++++.+|+++++
T Consensus        93 ~~~~~~~~---------~~~----~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~illl  145 (204)
T cd03240          93 ILENVIFC---------HQG----ESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILAL  145 (204)
T ss_pred             Hhhceeee---------chH----HHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEEE
Confidence            88887542         111    122222         22     235799999996      7899999999999999


Q ss_pred             eCCCCCCCHHHHH-HHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          262 DEPTSGLDSTTAQ-RIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       262 DEPtsgLD~~~~~-~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ||||++||+..+. .+.++|++++++ |.|||++||++.  ....+|+++.|.+
T Consensus       146 DEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~  197 (204)
T cd03240         146 DEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEK  197 (204)
T ss_pred             cCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEee
Confidence            9999999999999 999999999876 899999999964  3468999999965

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.93  E-value=2.4e-26  Score=241.16  Aligned_cols=204  Identities=23%  Similarity=0.303  Sum_probs=165.1

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEE
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I  158 (691)
                      .|++||+.|.|....                    -=+..||++|+.||++-|+|.||||||||+++|.|+. .|.+|+|
T Consensus       322 ~lelrnvrfay~~~~--------------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~-~PqsG~I  380 (546)
T COG4615         322 TLELRNVRFAYQDNA--------------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLY-QPQSGEI  380 (546)
T ss_pred             ceeeeeeeeccCccc--------------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhccc-CCCCCce
Confidence            699999999998431                    1378999999999999999999999999999999976 5789999


Q ss_pred             EECCEeCCh----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCC
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL  234 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~  234 (691)
                      ++||++++.    ++|+-++-|+-|..+|+.+--            ++...   ..+.++..++++.|.+...-+-|+-.
T Consensus       381 ~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~------------~e~~a---s~q~i~~~LqrLel~~ktsl~d~~fs  445 (546)
T COG4615         381 LLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLG------------PEGKA---SPQLIEKWLQRLELAHKTSLNDGRFS  445 (546)
T ss_pred             eECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhC------------CccCC---ChHHHHHHHHHHHHhhhhcccCCccc
Confidence            999999964    567778888888888764211            11111   12356778888887665433333322


Q ss_pred             CcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG-LARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      .-.||.|||||+++-.||+-+-+|+++||=-+--||.-+..+.+.+-- |+++||||+.+|||-  .-|..+||++.+++
T Consensus       446 ~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~  523 (546)
T COG4615         446 NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRN  523 (546)
T ss_pred             ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhc
Confidence            346999999999999999999999999999999999999999876654 566899999999993  46899999999999


Q ss_pred             CeEEEec
Q 005545          314 GSPIYSG  320 (691)
Q Consensus       314 G~iv~~G  320 (691)
                      |++++.-
T Consensus       524 G~~~e~t  530 (546)
T COG4615         524 GQLSELT  530 (546)
T ss_pred             Cceeecc
Confidence            9999764

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.92  E-value=5.6e-24  Score=253.41  Aligned_cols=126  Identities=25%  Similarity=0.434  Sum_probs=107.0

Q ss_pred             CCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhhCC---CEEEE
Q 005545          186 LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLVNP---SCLLL  261 (691)
Q Consensus       186 lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL  261 (691)
                      +||.|++.|...+.      +   ..+..+.++.+||.+ ..+..+     +.||||||||+.||++|+.+|   ++++|
T Consensus       792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL  857 (943)
T PRK00349        792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL  857 (943)
T ss_pred             CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence            78999988865321      1   123457899999975 355544     469999999999999999999   99999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHH
Q 005545          262 DEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       262 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  327 (691)
                      ||||+|||+.+...+++.|+++.++|.|||+++|++. .+ +.+|+++.|      ++|++++.|+++++..
T Consensus       858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~  927 (943)
T PRK00349        858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVAK  927 (943)
T ss_pred             ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHHh
Confidence            9999999999999999999999888999999999974 34 689999999      6899999999998854

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.92  E-value=1.8e-24  Score=243.06  Aligned_cols=197  Identities=29%  Similarity=0.390  Sum_probs=156.8

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      .-.|+++||+..-+..                    +..|++.++.+++||-+.|.||||||||||+|+|+|+- +--+|
T Consensus       390 ~~~i~~~nl~l~~p~~--------------------~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW-P~g~G  448 (604)
T COG4178         390 DHGITLENLSLRTPDG--------------------QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW-PWGSG  448 (604)
T ss_pred             cceeEEeeeeEECCCC--------------------CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC-ccCCC
Confidence            4679999999887632                    36899999999999999999999999999999999977 34467


Q ss_pred             EEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC-CCC
Q 005545          157 KITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG-PLF  235 (691)
Q Consensus       157 ~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~  235 (691)
                      +|.+-       ....+-|+||.|.+... |.+|-|.|+...   ...+    .+.+.++|.++||++..++.-+. .--
T Consensus       449 ~I~~P-------~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~  513 (604)
T COG4178         449 RISMP-------ADSALLFLPQRPYLPQG-TLREALCYPNAA---PDFS----DAELVAVLHKVGLGDLAERLDEEDRWD  513 (604)
T ss_pred             ceecC-------CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CCCC----hHHHHHHHHHcCcHHHHHHHhccCcHh
Confidence            77543       12347899999998766 999999875421   1122    24577889999998765543221 133


Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      +.||+|||||+++||.|+++|++++|||.||+||+.++..++++|++-.. +.|||-+.|++.  +..+.++.+-+.
T Consensus       514 ~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp-~~tvISV~Hr~t--l~~~h~~~l~l~  587 (604)
T COG4178         514 RVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELP-DATVISVGHRPT--LWNFHSRQLELL  587 (604)
T ss_pred             hhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCC-CCEEEEeccchh--hHHHHhhheeec
Confidence            56999999999999999999999999999999999999999999988443 689999999964  456667665554

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.92  E-value=7.9e-25  Score=212.96  Aligned_cols=228  Identities=20%  Similarity=0.287  Sum_probs=176.6

Q ss_pred             EEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCC---Cce
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK---FSG  156 (691)
Q Consensus        80 l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~---~~G  156 (691)
                      |..+||+..+..+.+                 ..++++++|+++..||+-+++|.||||||-..|+|+|.....   +.-
T Consensus         4 LDIrnL~IE~~TsqG-----------------~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTAD   66 (330)
T COG4170           4 LDIRNLTIEFKTSQG-----------------WVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTAD   66 (330)
T ss_pred             ccccceEEEEecCCC-----------------ceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhh
Confidence            567889988886543                 356899999999999999999999999999999999965321   123


Q ss_pred             EEEECCEeCCh----hcc----ccEEEEccCCC--CCCCCCHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHHHHcCCC
Q 005545          157 KITYNGRQFSS----SLK----RKTGFVTQDDV--LYPHLTVLETLSYAALLRLPKKL---TREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       157 ~I~~~G~~~~~----~~~----~~igyv~Q~~~--l~~~lTV~E~l~~~~~~~~~~~~---~~~~~~~~v~~~l~~lgL~  223 (691)
                      ...+++.++-+    ..|    +.+++++|++.  +-|.-+|...|.-....+.-++.   .-.-+++++-++|.++|+.
T Consensus        67 R~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIK  146 (330)
T COG4170          67 RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIK  146 (330)
T ss_pred             hcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccc
Confidence            44556655421    222    36789999986  56665665444321111110110   0112456778899999998


Q ss_pred             ccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHH
Q 005545          224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLY  302 (691)
Q Consensus       224 ~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~  302 (691)
                      +..|-.-  .++.+|.-||-|+|.||.|++.+|++|+.||||+.+|+.++.+|.++|.++.+ +|.||++++||.. .+.
T Consensus       147 dHkDIM~--SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is  223 (330)
T COG4170         147 DHKDIMR--SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MIS  223 (330)
T ss_pred             cHHHHHH--hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHH
Confidence            8776443  35668999999999999999999999999999999999999999999999986 6899999999965 588


Q ss_pred             hcCCEEEEecCCeEEEecCHhHHHH
Q 005545          303 RMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       303 ~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +.||++-||.-|+-++.++.+++++
T Consensus       224 ~W~d~i~VlYCGQ~~ESa~~e~l~~  248 (330)
T COG4170         224 QWADKINVLYCGQTVESAPSEELVT  248 (330)
T ss_pred             HHhhheEEEEecccccccchhHHhc
Confidence            9999999999999999999999875

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.91  E-value=5.4e-24  Score=231.60  Aligned_cols=216  Identities=25%  Similarity=0.369  Sum_probs=147.9

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC-CCc
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG-KFS  155 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~-~~~  155 (691)
                      .-.++++|+++++.                     ++.+++|+++++.+|+-++|+|+|||||||+|++|+|+..+ |..
T Consensus        73 s~dvk~~sls~s~~---------------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~  131 (614)
T KOG0927|consen   73 SRDVKIESLSLSFH---------------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEH  131 (614)
T ss_pred             cccceeeeeeeccC---------------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcc
Confidence            34688999988876                     35689999999999999999999999999999999998642 222


Q ss_pred             eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH------------------hhcCCCCCCHHHHHHHHHHHH
Q 005545          156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAA------------------LLRLPKKLTREEKIEQAEMVI  217 (691)
Q Consensus       156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~------------------~~~~~~~~~~~~~~~~v~~~l  217 (691)
                      =.++.-.+++.....+.+-+|.+.     .-..+.-+.+-.                  ..|+ ..+..+....++..+|
T Consensus       132 ~d~y~ls~e~~ps~~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il  205 (614)
T KOG0927|consen  132 IDFYLLSREIEPSEKQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKIL  205 (614)
T ss_pred             cchhhhcccCCCchHHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHH
Confidence            233333333322111111111100     000000000000                  0000 1122333444566666


Q ss_pred             HHcCC-CccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005545          218 MELGL-TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ  296 (691)
Q Consensus       218 ~~lgL-~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~  296 (691)
                      ..+|. .+..++.+     .++|||+|.|+++||+|..+|++|+|||||++||..+...+-+.|.+..+  .++|+++|.
T Consensus       206 ~glgf~~~m~~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~  278 (614)
T KOG0927|consen  206 HGLGFLSEMQDKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHS  278 (614)
T ss_pred             HhcCCCHhHHHHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecc
Confidence            66664 34445544     57999999999999999999999999999999999999999999887643  189999999


Q ss_pred             CchHHHhcCCEEEEecCCe-EEEecCHhHHHH
Q 005545          297 PSSRLYRMFDKVVVLSEGS-PIYSGRAAQVMD  327 (691)
Q Consensus       297 p~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~~  327 (691)
                      . +.+-..|.+|+-|.+++ +.|.|+.++...
T Consensus       279 Q-Dfln~vCT~Ii~l~~kkl~~y~Gnydqy~~  309 (614)
T KOG0927|consen  279 Q-DFLNGVCTNIIHLDNKKLIYYEGNYDQYVK  309 (614)
T ss_pred             h-hhhhhHhhhhheecccceeeecCCHHHHhh
Confidence            4 56889999999999999 556788776543

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.90  E-value=6.9e-23  Score=243.74  Aligned_cols=125  Identities=25%  Similarity=0.420  Sum_probs=103.3

Q ss_pred             CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCc-cccccccCCCCcccCHHHHHHHHHHHHHhh---CCCEEE
Q 005545          185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGGPLFRGISGGERKRVSIGQEMLV---NPSCLL  260 (691)
Q Consensus       185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~IA~aL~~---~P~iLl  260 (691)
                      .+||.|.+.|...+.   .      ..+..++++.+||.. ..++.+     +.|||||+||+.||++|+.   +|++++
T Consensus       789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI  854 (924)
T TIGR00630       789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI  854 (924)
T ss_pred             CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence            467777777754321   1      113457889999975 345444     5799999999999999997   599999


Q ss_pred             EeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHH
Q 005545          261 LDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQV  325 (691)
Q Consensus       261 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~  325 (691)
                      |||||+|||+.++..+.+.|+++.++|.|||+++|++. .+ +.+|++++|      ++|++++.|+++++
T Consensus       855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l  923 (924)
T TIGR00630       855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV  923 (924)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence            99999999999999999999999988999999999974 34 679999999      78999999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.90  E-value=8.1e-24  Score=230.24  Aligned_cols=206  Identities=23%  Similarity=0.357  Sum_probs=158.9

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .|..+.+.|++|.|+..                    ..++++++|-|..++.+|++||||+|||||||++.|.+. |..
T Consensus       386 p~pvi~~~nv~F~y~~~--------------------~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~  444 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDN--------------------PMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTI  444 (614)
T ss_pred             CCCeEEEeccccCCCCc--------------------chhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-ccc
Confidence            35679999999999732                    158999999999999999999999999999999999874 678


Q ss_pred             eEEEECCEeCChhccccEEEEccC--CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC
Q 005545          156 GKITYNGRQFSSSLKRKTGFVTQD--DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       156 G~I~~~G~~~~~~~~~~igyv~Q~--~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      |.|.-.-+       ..+++..|.  +.+.-+.++.|++.=..    +    .+...+.+..+|.++||.....+.    
T Consensus       445 G~vs~~~H-------~~~~~y~Qh~~e~ldl~~s~le~~~~~~----~----~~~~~e~~r~ilgrfgLtgd~q~~----  505 (614)
T KOG0927|consen  445 GMVSRHSH-------NKLPRYNQHLAEQLDLDKSSLEFMMPKF----P----DEKELEEMRSILGRFGLTGDAQVV----  505 (614)
T ss_pred             cccccccc-------ccchhhhhhhHhhcCcchhHHHHHHHhc----c----ccchHHHHHHHHHHhCCCcccccc----
Confidence            88864322       234444443  22333567777764211    1    122345678899999998444332    


Q ss_pred             CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      .++.||+|||+||..|+.++..|.+|+|||||+|||..+...+-+.|.+..   -+||+++||.. .+.++++++.+..+
T Consensus       506 p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---Ggvv~vSHDfr-lI~qVaeEi~~c~~  581 (614)
T KOG0927|consen  506 PMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---GGVVLVSHDFR-LISQVAEEIWVCEN  581 (614)
T ss_pred             chhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC---Cceeeeechhh-HHHHHHHHhHhhcc
Confidence            246799999999999999999999999999999999999999999887763   48999999964 68899999999998


Q ss_pred             CeE-EEecCHhHH
Q 005545          314 GSP-IYSGRAAQV  325 (691)
Q Consensus       314 G~i-v~~G~~~~~  325 (691)
                      |.+ .+.|....-
T Consensus       582 ~~~~~~~G~i~~y  594 (614)
T KOG0927|consen  582 GTVTKWDGDIEIY  594 (614)
T ss_pred             CceeecCccHHHH
Confidence            765 466755443

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.89  E-value=7.8e-23  Score=204.96  Aligned_cols=170  Identities=22%  Similarity=0.208  Sum_probs=122.2

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHH
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      -++++++++.+| +.+|+|||||||||||.+|...+.+...  ....|..+..     .....+.+++|+..++++    
T Consensus        11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~--~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~----   83 (198)
T cd03276          11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS--DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN----   83 (198)
T ss_pred             ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc--cccccccHHHHhhCCCCeEEEEEEEEcCCccCC----
Confidence            357788888888 8899999999999999999853321110  0111221111     123457888887665541    


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHH----hhCCCEEEEeCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEM----LVNPSCLLLDEPT  265 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPt  265 (691)
                                   .... ...++++++++.   .+..++.+     +.||+|||||++||++|    +.+|++++|||||
T Consensus        84 -------------~~~~-~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~  141 (198)
T cd03276          84 -------------PLCV-LSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFD  141 (198)
T ss_pred             -------------cCCH-HHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcc
Confidence                         0111 113456677766   44555554     57999999999999999    5899999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhC---CcEEEEEeCCCchHHHhcCCEEEEecCCe
Q 005545          266 SGLDSTTAQRIVATLRGLARG---GRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       266 sgLD~~~~~~i~~~L~~l~~~---g~tii~~~H~p~~~i~~~~D~v~~L~~G~  315 (691)
                      +|||+.++..+.+.|++++++   ++|||+++|++.. +.+ +|+|.+|..++
T Consensus       142 ~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~  192 (198)
T cd03276         142 VFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD  192 (198)
T ss_pred             cccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence            999999999999999998653   3689999999754 545 59999998764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.88  E-value=3.6e-22  Score=213.32  Aligned_cols=173  Identities=25%  Similarity=0.307  Sum_probs=139.5

Q ss_pred             eeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHH
Q 005545          116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYA  195 (691)
Q Consensus       116 L~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~  195 (691)
                      |+==+++|..||+++++||||-||||+.++|+|.+ .|++|+    .      ..-+++|=||--.--...||++.|.-.
T Consensus       357 L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~i-kPdeg~----~------~~~~vSyKPQyI~~~~~gtV~~~l~~~  425 (591)
T COG1245         357 LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVI-KPDEGS----E------EDLKVSYKPQYISPDYDGTVEDLLRSA  425 (591)
T ss_pred             EEecCCeeecceEEEEECCCCcchHHHHHHHhccc-cCCCCC----C------ccceEeecceeecCCCCCcHHHHHHHh
Confidence            55556778888999999999999999999999987 467886    1      123488888865444568999987644


Q ss_pred             HhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 005545          196 ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR  275 (691)
Q Consensus       196 ~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~  275 (691)
                      ..-+....       -.-.++++-|+|++..++.+.     +|||||.|||+||.+|..++++++||||++-||+..+..
T Consensus       426 ~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~  493 (591)
T COG1245         426 IRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII  493 (591)
T ss_pred             hhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence            32211111       123467788899888888774     699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          276 IVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       276 i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      +.+.++++.. .++|.+++-||.. .+--++||+++.+
T Consensus       494 vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~  530 (591)
T COG1245         494 VAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE  530 (591)
T ss_pred             HHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence            9999999996 5889999999965 4677899998875

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.88  E-value=1.1e-22  Score=210.69  Aligned_cols=179  Identities=17%  Similarity=0.233  Sum_probs=119.5

Q ss_pred             eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEe-C-Ch---------hccccEEEEccCCCC-CCCCCHHHH
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ-F-SS---------SLKRKTGFVTQDDVL-YPHLTVLET  191 (691)
Q Consensus       124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~-~-~~---------~~~~~igyv~Q~~~l-~~~lTV~E~  191 (691)
                      .++ +++|+|||||||||||++|++.+. +..|++..++.. + ..         ...-.+.|..|++.. .-..++.+.
T Consensus        21 ~~~-~~~i~G~NGsGKStll~ai~~~l~-~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~   98 (247)
T cd03275          21 FDR-FTCIIGPNGSGKSNLMDAISFVLG-EKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGG   98 (247)
T ss_pred             CCC-eEEEECCCCCCHHHHHHHHHHHhC-CCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECC
Confidence            344 999999999999999999999764 335666544321 1 00         111134444444321 001111111


Q ss_pred             HHHHHhhcCC-CCCCHHHHHHHHHHHHHHcCCCccccc---------cccC--------CCCcccCHHHHHHHHHHHHHh
Q 005545          192 LSYAALLRLP-KKLTREEKIEQAEMVIMELGLTRCRNS---------VVGG--------PLFRGISGGERKRVSIGQEML  253 (691)
Q Consensus       192 l~~~~~~~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~vg~--------~~~~~LSGGerqRv~IA~aL~  253 (691)
                      ..   .++.. +..+    .+.++++++.+|+......         .+.+        ..+..||||||||++||++++
T Consensus        99 ~~---~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~  171 (247)
T cd03275          99 SS---SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFA  171 (247)
T ss_pred             ce---EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHH
Confidence            00   00111 1112    2345688888998532111         1111        123679999999999999998


Q ss_pred             hC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          254 VN----PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       254 ~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      .+    |+++++||||+|||+..+..+.+.|++++++|.+||++||++  ++.+.+|++++|.+
T Consensus       172 ~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~--~~~~~~d~i~~~~~  233 (247)
T cd03275         172 IHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKE--EFFSKADALVGVYR  233 (247)
T ss_pred             HhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCH--HHHhhCCeEEEEEe
Confidence            75    899999999999999999999999999987799999999994  45689999999975

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.87  E-value=2.9e-21  Score=211.81  Aligned_cols=206  Identities=23%  Similarity=0.288  Sum_probs=158.2

Q ss_pred             cceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~  155 (691)
                      .+..|+|++|+.+-+.+                   +..+++|+|++|+.|+-+.|.||||||||+|+|+|+|+- +..+
T Consensus       430 ~Dn~i~~e~v~l~tPt~-------------------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW-p~~~  489 (659)
T KOG0060|consen  430 ADNAIEFEEVSLSTPTN-------------------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW-PSTG  489 (659)
T ss_pred             ccceEEeeeeeecCCCC-------------------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc-ccCC
Confidence            34789999999987642                   245889999999999999999999999999999999977 4568


Q ss_pred             eEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccc------c
Q 005545          156 GKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS------V  229 (691)
Q Consensus       156 G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~------~  229 (691)
                      |++.--...-    -+.+-||||.|..--. |.||.+.|...---+  ..+....+++.+.|+.++|.|..+.      .
T Consensus       490 G~l~k~~~~~----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~  562 (659)
T KOG0060|consen  490 GKLTKPTDGG----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQ  562 (659)
T ss_pred             CeEEecccCC----CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCch
Confidence            9887543211    1458899999986654 999999886321101  1111223456677777777654432      2


Q ss_pred             ccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +-......||+||+||++.||-+.++|++-+|||.||++|......+.+.++++   |.|.|-+.|..+  +.+.=|.++
T Consensus       563 ~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L  637 (659)
T KOG0060|consen  563 VDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVL  637 (659)
T ss_pred             hhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEE
Confidence            222233569999999999999999999999999999999999999999888765   899999999964  567778888


Q ss_pred             EecC
Q 005545          310 VLSE  313 (691)
Q Consensus       310 ~L~~  313 (691)
                      -|+.
T Consensus       638 ~~~g  641 (659)
T KOG0060|consen  638 RMDG  641 (659)
T ss_pred             EecC
Confidence            8875

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=7.1e-22  Score=214.14  Aligned_cols=190  Identities=25%  Similarity=0.334  Sum_probs=131.1

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccC-CCCCCCCCHHH
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQD-DVLYPHLTVLE  190 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~-~~l~~~lTV~E  190 (691)
                      .+.+|++-++++..|..++|+|+||+|||||||+|+.       |.|.  |-+...+.+  --+++-. +.+..+.++.+
T Consensus        92 ~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~-------~~v~--~f~veqE~~--g~~t~~~~~~l~~D~~~~d  160 (582)
T KOG0062|consen   92 GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN-------GQVS--GFHVEQEVR--GDDTEALQSVLESDTERLD  160 (582)
T ss_pred             chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh-------cCcC--ccCchhhee--ccchHHHhhhhhccHHHHH
Confidence            3679999999999999999999999999999999996       2221  222222221  1122222 12222333333


Q ss_pred             HHHHHHhhcCCCCCCHH-HHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 005545          191 TLSYAALLRLPKKLTRE-EKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       191 ~l~~~~~~~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD  269 (691)
                      -+.--      +.+... +..+....+|..+|..+.....    ..+.||||.|-|+++||||..+|+||||||||+.||
T Consensus       161 fl~~e------~~l~~~~~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLD  230 (582)
T KOG0062|consen  161 FLAEE------KELLAGLTLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLD  230 (582)
T ss_pred             HHHhh------hhhhccchHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhHHHHHHHHhcCCCEEeecCCcccch
Confidence            22111      011111 2233344488889987544322    235799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEE-EecCHhHHH
Q 005545          270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPI-YSGRAAQVM  326 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~  326 (691)
                      ..+...+.+.|+.+   +.|+|+++|| +..+-..|..|+-+++-|+- |.|..++..
T Consensus       231 v~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~Fv  284 (582)
T KOG0062|consen  231 VVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQFV  284 (582)
T ss_pred             hHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHHHH
Confidence            99999999999886   3799999999 66677788887777765543 556555443

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.85  E-value=8.4e-21  Score=184.61  Aligned_cols=212  Identities=20%  Similarity=0.271  Sum_probs=160.1

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      .-.|+++++.|+|+..                    .+++-|+|++++.|....++|.||||||||||+|+|.. -.-.|
T Consensus        11 ~~aievsgl~f~y~~~--------------------dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKh-mv~~~   69 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVS--------------------DPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKH-MVGGG   69 (291)
T ss_pred             cceEEEeccEEecccC--------------------CceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcc-cccCC
Confidence            4579999999999853                    25899999999999999999999999999999999953 22358


Q ss_pred             EEEECCEeCCh---------------hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcC
Q 005545          157 KITYNGRQFSS---------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG  221 (691)
Q Consensus       157 ~I~~~G~~~~~---------------~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lg  221 (691)
                      .|.++|.+.-.               ++.+..++-- +-.+-.++++.+.| |+..     .... +   +-+.+++.+.
T Consensus        70 ~v~VlgrsaFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp-~---Rre~LI~iLD  138 (291)
T KOG2355|consen   70 VVQVLGRSAFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP-E---RREKLIDILD  138 (291)
T ss_pred             eEEEcCcCccccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh-h---Hhhhhhhhee
Confidence            99999976411               2333333222 22233456776654 4321     1112 2   3345666666


Q ss_pred             CCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchH
Q 005545          222 LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSR  300 (691)
Q Consensus       222 L~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~  300 (691)
                      +.-.. +      ...+|-|||+||.|++-|++.=++|+|||-|--||..++.++++.|++-++ +|.|||..||--. -
T Consensus       139 Idl~W-R------mHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFD-G  210 (291)
T KOG2355|consen  139 IDLRW-R------MHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFD-G  210 (291)
T ss_pred             ccceE-E------EeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeecc-c
Confidence            54211 1      134899999999999999999999999999999999999999999999886 5999999999965 4


Q ss_pred             HHhcCCEEEEecCCeEEEecCHhHHHHH
Q 005545          301 LYRMFDKVVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       301 i~~~~D~v~~L~~G~iv~~G~~~~~~~~  328 (691)
                      +.....+++.++.|+++-.-+.+++.++
T Consensus       211 Le~Wpthl~yi~~Gkl~~~l~~~~i~e~  238 (291)
T KOG2355|consen  211 LETWPTHLVYIKSGKLVDNLKYQKIKEF  238 (291)
T ss_pred             hhhcchhEEEecCCeeeeccccchhhhh
Confidence            6788999999999999986666666543

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.84  E-value=1e-20  Score=189.91  Aligned_cols=154  Identities=22%  Similarity=0.169  Sum_probs=109.8

Q ss_pred             eeeceEEEEeCCe-EEEEEcCCCCcHHHHHHHHH-cCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          115 VLNGVSGMVKPGE-LLAMLGPSGSGKTTLLTALA-GRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       115 iL~~vs~~i~~Ge-~~aliGpsGsGKSTLL~~L~-G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      -+.++|+++.+|+ +++|.||||||||||||+|+ +.+. ...|.      .+...-...++|..|....+         
T Consensus        16 ~~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~-~~~G~------~vp~~~~~~~~~~~~~~~~l---------   79 (200)
T cd03280          16 KVVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM-AQSGL------PIPAAEGSSLPVFENIFADI---------   79 (200)
T ss_pred             ceEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH-HHcCC------CccccccccCcCccEEEEec---------
Confidence            3568999999995 89999999999999999998 2110 00110      00000001233433321111         


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT  272 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~  272 (691)
                                                  +..+..+..     ...+|+|||||+.|+++ +.+|+++++|||++|||+..
T Consensus        80 ----------------------------g~~~~l~~~-----~s~fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~  125 (200)
T cd03280          80 ----------------------------GDEQSIEQS-----LSTFSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVE  125 (200)
T ss_pred             ----------------------------CchhhhhcC-----cchHHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHH
Confidence                                        111111111     13589999999999977 58999999999999999999


Q ss_pred             HHHHH-HHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEec
Q 005545          273 AQRIV-ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG  320 (691)
Q Consensus       273 ~~~i~-~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G  320 (691)
                      +..+. ..++.+.+.|.++|++||+.  ++.+.+|++..|.+|++.+.+
T Consensus       126 ~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~  172 (200)
T cd03280         126 GAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP  172 (200)
T ss_pred             HHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence            99996 57888887789999999983  577999999999999998874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1.9e-20  Score=198.25  Aligned_cols=193  Identities=25%  Similarity=0.405  Sum_probs=149.7

Q ss_pred             ccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 005545           75 LHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF  154 (691)
Q Consensus        75 ~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~  154 (691)
                      .+|..|-+.||+|.|+.                    .++++++++|-|.-...+||+||||.||||||++|.|.+. |.
T Consensus       582 L~PPvLGlH~VtFgy~g--------------------qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~-P~  640 (807)
T KOG0066|consen  582 LNPPVLGLHDVTFGYPG--------------------QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD-PN  640 (807)
T ss_pred             CCCCeeecccccccCCC--------------------CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCC-CC
Confidence            35677889999999873                    2468899999999999999999999999999999999884 66


Q ss_pred             ceEEEECCEeCChhccccEEEEccCC--CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccC
Q 005545          155 SGKITYNGRQFSSSLKRKTGFVTQDD--VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG  232 (691)
Q Consensus       155 ~G~I~~~G~~~~~~~~~~igyv~Q~~--~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~  232 (691)
                      .|+..-|       .|-+||+..|..  .|...-|.-|.|.-.  +.    ++..    .++..|..+||...++|.-  
T Consensus       641 ~GE~RKn-------hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--FN----lpyq----~ARK~LG~fGL~sHAHTik--  701 (807)
T KOG0066|consen  641 DGELRKN-------HRLRIGWFDQHANEALNGEETPVEYLQRK--FN----LPYQ----EARKQLGTFGLASHAHTIK--  701 (807)
T ss_pred             cchhhcc-------ceeeeechhhhhHHhhccccCHHHHHHHh--cC----CChH----HHHHHhhhhhhhhccceEe--
Confidence            7876533       345799988874  355556777766422  12    2222    3455788999988888753  


Q ss_pred             CCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       233 ~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                        ++.||||||-||++|.--+..|+||||||||+.||..+...+.+.|++.   .-.||+++||-. .+.+---.++|+.
T Consensus       702 --ikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeR-Li~eT~C~LwVvE  775 (807)
T KOG0066|consen  702 --IKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDER-LIVETDCNLWVVE  775 (807)
T ss_pred             --eeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccc-eeeecCceEEEEc
Confidence              4679999999999999899999999999999999999999999988876   347999999954 2434333556655


Q ss_pred             C
Q 005545          313 E  313 (691)
Q Consensus       313 ~  313 (691)
                      +
T Consensus       776 ~  776 (807)
T KOG0066|consen  776 N  776 (807)
T ss_pred             c
Confidence            4

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.83  E-value=3.5e-20  Score=187.83  Aligned_cols=80  Identities=20%  Similarity=0.233  Sum_probs=68.0

Q ss_pred             CcccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC-C-cEEEEEeCCCchHHHhcCC--
Q 005545          235 FRGISGGERKRVSIGQEM----LVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G-RTVITTIHQPSSRLYRMFD--  306 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL----~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tii~~~H~p~~~i~~~~D--  306 (691)
                      +..||||||||+.++++|    +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||+... ..+.+|  
T Consensus       124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~  202 (213)
T cd03277         124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM  202 (213)
T ss_pred             hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence            357999999999877554    5899999999999999999999999999999876 5 579999999654 456666  


Q ss_pred             EEEEecCCe
Q 005545          307 KVVVLSEGS  315 (691)
Q Consensus       307 ~v~~L~~G~  315 (691)
                      +|++|++|+
T Consensus       203 ~v~~l~~g~  211 (213)
T cd03277         203 TVLCVYNGP  211 (213)
T ss_pred             EEEEEecCc
Confidence            788888886

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.83  E-value=1e-21  Score=195.58  Aligned_cols=205  Identities=24%  Similarity=0.470  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHH-hhcchhH-HHHHHHHHHHHHHHHHHhhCCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 005545          427 EQFKVLLKRGLQE-RKHESYS-YLRIFQVLSVSILSGLLWWHSDR-SHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERA  503 (691)
Q Consensus       427 ~Q~~~L~~R~~~~-~r~~~~~-~~r~~~~i~~all~G~lf~~~~~-~~~~~r~g~lff~~~~~~~~~~~~~i~~f~~eR~  503 (691)
                      +|++.|++|+++. +|++... ...++..++.++++|.+|.+.++ .+..++.|++++.....++....+....+..||.
T Consensus         1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (210)
T PF01061_consen    1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKLGNSQDGFNRPGLIFGSIIFSFFSSISGSSISFERERG   80 (210)
T ss_pred             CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccceeeehhhHHhhhhhcccchhhhhhhcc
Confidence            5999999999986 6888776 78999999999999999998764 2233678888887777665555555577889999


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 005545          504 MLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDV  583 (691)
Q Consensus       504 v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~  583 (691)
                      .+.||+.++.|++.+|++||.+.+++..++.++++.++.|++.|++.+  +|+.+++++++..+++.++|.++++++++.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~  158 (210)
T PF01061_consen   81 TLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFPSF  158 (210)
T ss_pred             ccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchhhh
Confidence            999999999999999999999999999999999999999999999987  778888888888999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHh
Q 005545          584 KQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQY  633 (691)
Q Consensus       584 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef  633 (691)
                      +.|..+.+++..++++++|.+++  ++|+|++|+.|+||++|++|++..++|
T Consensus       159 ~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f  210 (210)
T PF01061_consen  159 RDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF  210 (210)
T ss_pred             hhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            99999999999999999999998  999999999999999999999998876

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=9.1e-20  Score=197.87  Aligned_cols=207  Identities=22%  Similarity=0.306  Sum_probs=161.2

Q ss_pred             cCccceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCC
Q 005545           73 ESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRG  152 (691)
Q Consensus        73 ~~~~~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~  152 (691)
                      ....|..|++.+|+|.|..+.                   -.++.+++..++.-+..+++|+||+||||++|++.|-+. 
T Consensus       356 e~~~~p~l~i~~V~f~y~p~~-------------------y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~-  415 (582)
T KOG0062|consen  356 EVLSPPNLRISYVAFEYTPSE-------------------YQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT-  415 (582)
T ss_pred             CcCCCCeeEEEeeeccCCCcc-------------------hhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC-
Confidence            445678899999999987431                   147889999999999999999999999999999999764 


Q ss_pred             CCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccc
Q 005545          153 KFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC-RNSVVG  231 (691)
Q Consensus       153 ~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg  231 (691)
                      |..|.+.+++       |.+++|-.|...-+-.+.|-+- .+....+  .+..++    .++.-+..+||+.. +..   
T Consensus       416 ~~rgi~~~~~-------r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~--pG~~~e----e~r~hl~~~Gl~g~la~~---  478 (582)
T KOG0062|consen  416 PTRGIVGRHP-------RLRIKYFAQHHVDFLDKNVNAV-DFMEKSF--PGKTEE----EIRRHLGSFGLSGELALQ---  478 (582)
T ss_pred             cccceeeecc-------cceecchhHhhhhHHHHHhHHH-HHHHHhC--CCCCHH----HHHHHHHhcCCCchhhhc---
Confidence            4588877653       5679999997654434555443 2322222  233443    34556888999642 222   


Q ss_pred             CCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                        .+++||||||=||++|.....+|.+|+|||||+.||-.+-..+.+.|+..   +-.||++||| .+.+...|+.+++.
T Consensus       479 --si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd-~~fi~~~c~E~Wvv  552 (582)
T KOG0062|consen  479 --SIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHD-EEFISSLCKELWVV  552 (582)
T ss_pred             --cccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECc-HHHHhhcCceeEEE
Confidence              24679999999999999999999999999999999999999999888887   3479999999 56788999999999


Q ss_pred             cCCeEEE-ecCH
Q 005545          312 SEGSPIY-SGRA  322 (691)
Q Consensus       312 ~~G~iv~-~G~~  322 (691)
                      .+|++.- .|..
T Consensus       553 e~g~vt~ieg~~  564 (582)
T KOG0062|consen  553 EDGKVTPIEGGI  564 (582)
T ss_pred             cCCcEEeeeccH
Confidence            9999874 3443

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.81  E-value=3.8e-20  Score=197.94  Aligned_cols=171  Identities=30%  Similarity=0.453  Sum_probs=128.3

Q ss_pred             EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE-----------ECCEeCChhcc----------ccEEEEccCCC
Q 005545          123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT-----------YNGRQFSSSLK----------RKTGFVTQDDV  181 (691)
Q Consensus       123 i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~-----------~~G~~~~~~~~----------~~igyv~Q~~~  181 (691)
                      .++|++++|+|+||-||||-+|+|+|.+.+ .=|+-.           +-|.++..-++          .+..||.--|.
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~P-NLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk  175 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKP-NLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPK  175 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCcccc-CCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHH
Confidence            369999999999999999999999997743 233211           11211111011          12233332233


Q ss_pred             CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEE
Q 005545          182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLL  261 (691)
Q Consensus       182 l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlL  261 (691)
                      .+.. ||.|-|.-.            +..-..++++++++|.+..|+.+.     .|||||-||++||.+++.+++++++
T Consensus       176 ~~KG-~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~F  237 (591)
T COG1245         176 VVKG-KVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFF  237 (591)
T ss_pred             Hhcc-hHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEE
Confidence            3322 666655311            112357889999999999998774     6999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          262 DEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       262 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      |||||-||...+....+.+++|++.+++||++.||. ..+--++|-|.++..
T Consensus       238 DEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDL-avLD~lsD~vhI~YG  288 (591)
T COG1245         238 DEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDL-AVLDYLSDFVHILYG  288 (591)
T ss_pred             cCCcccccHHHHHHHHHHHHHHhccCCeEEEEechH-HHHHHhhheeEEEec
Confidence            999999999999999999999999899999999996 456678999988863

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.80  E-value=5.4e-19  Score=174.29  Aligned_cols=74  Identities=20%  Similarity=0.328  Sum_probs=68.4

Q ss_pred             cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          238 ISGGERKRVSIGQEML----VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       238 LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ||||||||++||++++    .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|++.  ..+.+|+++.+.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~  172 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF  172 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence            7999999999999996    699999999999999999999999999999877899999999964  4578999999975

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.80  E-value=1.5e-19  Score=181.37  Aligned_cols=148  Identities=18%  Similarity=0.175  Sum_probs=109.0

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      +.+++|+++..  |++++|+||||||||||+|+|+|...      +...|.++..     ..+++|.+.+++.+|+.|++
T Consensus        14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~------l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l   80 (199)
T cd03283          14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI------LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDL   80 (199)
T ss_pred             CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH------HHHcCCEEec-----CccCcccceEEEeccchhcc
Confidence            45788887765  79999999999999999999998441      1124544422     13677877899999999998


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT  272 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~  272 (691)
                      .++..      ....+ .++++++++.+++                               .+|+++++|||++|+|+..
T Consensus        81 ~~~~s------~~~~e-~~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~  122 (199)
T cd03283          81 RDGIS------YFYAE-LRRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRE  122 (199)
T ss_pred             ccccC------hHHHH-HHHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHH
Confidence            76431      11222 2567777777652                               6899999999999999999


Q ss_pred             HHHHH-HHHHHHHhCCcEEEEEeCCCchHHHhc--CCEEEEec
Q 005545          273 AQRIV-ATLRGLARGGRTVITTIHQPSSRLYRM--FDKVVVLS  312 (691)
Q Consensus       273 ~~~i~-~~L~~l~~~g~tii~~~H~p~~~i~~~--~D~v~~L~  312 (691)
                      +..+. .+++.+.+.|.|+|++||++. .+...  .++|-.++
T Consensus       123 ~~~l~~~ll~~l~~~~~tiiivTH~~~-~~~~~~~~~~v~~~~  164 (199)
T cd03283         123 RQAASAAVLKFLKNKNTIGIISTHDLE-LADLLDLDSAVRNYH  164 (199)
T ss_pred             HHHHHHHHHHHHHHCCCEEEEEcCcHH-HHHhhhcCCCeEEEE
Confidence            98875 478888877899999999964 34333  34554443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.78  E-value=4.3e-18  Score=211.32  Aligned_cols=198  Identities=25%  Similarity=0.363  Sum_probs=145.1

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHH-HHHc----CCC---CCCceEEEECCEeCCh--------------hccc-
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLT-ALAG----RLR---GKFSGKITYNGRQFSS--------------SLKR-  171 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~-~L~G----~~~---~~~~G~I~~~G~~~~~--------------~~~~-  171 (691)
                      =|+|++.+|+-|.+++|.|-||||||||++ +|.-    .+.   ...+--|.+|..|+..              .+|+ 
T Consensus      1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635       1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred             cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence            489999999999999999999999999996 4421    110   1223457777766631              0110 


Q ss_pred             ------------------------------cEEEEccCCCCC--------------------------------CCCCHH
Q 005545          172 ------------------------------KTGFVTQDDVLY--------------------------------PHLTVL  189 (691)
Q Consensus       172 ------------------------------~igyv~Q~~~l~--------------------------------~~lTV~  189 (691)
                                                    .-|++.=+-.++                                -.|||.
T Consensus      1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635       1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred             HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence                                          112221111111                                246777


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhC---CCEEEEeCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVN---PSCLLLDEPTS  266 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~---P~iLlLDEPts  266 (691)
                      |.+.|...         ..+..+.-+.|.++||....   .|. ....|||||.||+-||.+|..+   +.+++|||||+
T Consensus      1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LGq-~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635       1665 EVAETFPF---------LKKIQKPLQALIDNGLGYLP---LGQ-NLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred             HHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CCC-cCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence            77666421         11233456788999997543   232 2356999999999999999875   78999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec------CCeEEEecCHhHHHH
Q 005545          267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS------EGSPIYSGRAAQVMD  327 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~~  327 (691)
                      ||++...+.+++.|++|.+.|.|||++.|++  ++.+.||.|+-|-      .|+|++.|+++++.+
T Consensus      1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~--~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635       1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDP--ALLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred             CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCH--HHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence            9999999999999999999999999999995  4667899999993      489999999999965

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.78  E-value=1.7e-18  Score=196.25  Aligned_cols=128  Identities=28%  Similarity=0.462  Sum_probs=105.6

Q ss_pred             CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC---CEEEE
Q 005545          185 HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP---SCLLL  261 (691)
Q Consensus       185 ~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P---~iLlL  261 (691)
                      .|||.|...|....      +   ...+.-+.|..+||....   .|. ....|||||.|||-+|.+|..+.   .+++|
T Consensus       783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LGQ-patTLSGGEaQRvKLA~EL~k~~tg~TlYiL  849 (935)
T COG0178         783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LGQ-PATTLSGGEAQRVKLAKELSKRSTGKTLYIL  849 (935)
T ss_pred             hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cCC-ccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence            47888877775421      1   123445677888987532   332 33579999999999999999877   89999


Q ss_pred             eCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHH
Q 005545          262 DEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       262 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  327 (691)
                      ||||+||-.....++++.|.+|.++|.|||++.|+.  ++.+.+|.|+-|      ..|+||..|+|+++.+
T Consensus       850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~  919 (935)
T COG0178         850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK  919 (935)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence            999999999999999999999999999999999995  477999999998      3589999999999976

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.78  E-value=9.9e-19  Score=185.12  Aligned_cols=185  Identities=27%  Similarity=0.400  Sum_probs=140.8

Q ss_pred             cccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCC-------CCCceEEEECCEeCChhccccEEEEccCC-CC
Q 005545          111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-------GKFSGKITYNGRQFSSSLKRKTGFVTQDD-VL  182 (691)
Q Consensus       111 ~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~-------~~~~G~I~~~G~~~~~~~~~~igyv~Q~~-~l  182 (691)
                      ....+|+|+|++++||++++|+|+|||||||||++|.|...       .|++|.|.+--..       ..+.+|-+. .-
T Consensus       394 ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~Ep~  466 (593)
T COG2401         394 IERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEYEPE  466 (593)
T ss_pred             eeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCcccccc
Confidence            34679999999999999999999999999999999999532       2667877653221       123444432 12


Q ss_pred             CCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEe
Q 005545          183 YPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLD  262 (691)
Q Consensus       183 ~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLD  262 (691)
                      +..-|+.|++.-     .+.      +...+.++|++.||.+..--+   ...+.||-|||.|+.||.++..+|.+++.|
T Consensus       467 f~~~tilehl~s-----~tG------D~~~AveILnraGlsDAvlyR---r~f~ELStGQKeR~KLAkllaerpn~~~iD  532 (593)
T COG2401         467 FGEVTILEHLRS-----KTG------DLNAAVEILNRAGLSDAVLYR---RKFSELSTGQKERAKLAKLLAERPNVLLID  532 (593)
T ss_pred             cCchhHHHHHhh-----ccC------chhHHHHHHHhhccchhhhhh---ccHhhcCcchHHHHHHHHHHhcCCCcEEhh
Confidence            335677777531     111      122456789999997532211   123679999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhc-CCEEEEecCCeEE
Q 005545          263 EPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRM-FDKVVVLSEGSPI  317 (691)
Q Consensus       263 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~-~D~v~~L~~G~iv  317 (691)
                      |--+-||+.++..+.+-|.+++++ |.|++++||.|. .+-.+ -|+++++.-|++.
T Consensus       533 EF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~  588 (593)
T COG2401         533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP  588 (593)
T ss_pred             hhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence            999999999999999999999974 999999999974 35555 6899988877654

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.78  E-value=2.8e-19  Score=182.35  Aligned_cols=152  Identities=19%  Similarity=0.212  Sum_probs=115.5

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEE-EEccCCCCCCCCCHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG-FVTQDDVLYPHLTVLET  191 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~ig-yv~Q~~~l~~~lTV~E~  191 (691)
                      +.+.+|++++..+|++++|.||||+||||||++++- .                 .+..++| |||.+...++       
T Consensus        17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~-~-----------------~~la~~g~~vpa~~~~~~-------   71 (222)
T cd03285          17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV-I-----------------VLMAQIGCFVPCDSADIP-------   71 (222)
T ss_pred             CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH-H-----------------HHHHHhCCCcCcccEEEe-------
Confidence            468999999999999999999999999999999982 1                 1112233 5555432111       


Q ss_pred             HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 005545          192 LSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEM--LVNPSCLLLDEP---TS  266 (691)
Q Consensus       192 l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL--~~~P~iLlLDEP---ts  266 (691)
                                          .+++++..+++.+..        .+++|.|+++++.+++++  +.+|+++|||||   |+
T Consensus        72 --------------------~~~~il~~~~l~d~~--------~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~  123 (222)
T cd03285          72 --------------------IVDCILARVGASDSQ--------LKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS  123 (222)
T ss_pred             --------------------ccceeEeeeccccch--------hcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence                                122344555554332        246899999999999999  899999999999   99


Q ss_pred             CCCHHHHHHHHHHHHHHHh-CCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecC
Q 005545          267 GLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR  321 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~  321 (691)
                      +||+.....  .+++.+.+ .|.++|++||+  .++.+++|++..+.+|++...+.
T Consensus       124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~  175 (222)
T cd03285         124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD  175 (222)
T ss_pred             hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence            999988854  34455554 48999999997  46789999999999999987764

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.76  E-value=3.1e-18  Score=180.46  Aligned_cols=76  Identities=25%  Similarity=0.408  Sum_probs=68.7

Q ss_pred             ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          237 GISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      .||||||||+++|++++.    +|+++++||||+|||+.+...+.+.|+++.+ +.|+|+++|++.  +...+|+++.|.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~  246 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE  246 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence            499999999999997654    9999999999999999999999999999875 689999999974  468999999998


Q ss_pred             CCe
Q 005545          313 EGS  315 (691)
Q Consensus       313 ~G~  315 (691)
                      +|.
T Consensus       247 ~~~  249 (276)
T cd03241         247 KEV  249 (276)
T ss_pred             Eec
Confidence            763

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.76  E-value=2.1e-18  Score=186.95  Aligned_cols=170  Identities=22%  Similarity=0.352  Sum_probs=123.5

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      ..++..++|.|++|--+.|+||||||||+|+|+|+|+- |...|...+      + ....+-|+||.|..- .-|.+|.+
T Consensus       495 ~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW-Pvy~g~L~~------P-~~~~mFYIPQRPYms-~gtlRDQI  565 (728)
T KOG0064|consen  495 DVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW-PVYNGLLSI------P-RPNNIFYIPQRPYMS-GGTLRDQI  565 (728)
T ss_pred             ceeecceeEEecCCceEEEECCCCccHHHHHHHHhccC-cccCCeeec------C-CCcceEeccCCCccC-cCccccee
Confidence            35889999999999999999999999999999999976 332333321      1 234599999998755 44677766


Q ss_pred             HHHHh---hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCC----CCcccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 005545          193 SYAAL---LRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP----LFRGISGGERKRVSIGQEMLVNPSCLLLDEPT  265 (691)
Q Consensus       193 ~~~~~---~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPt  265 (691)
                      .|.-.   .+ .++.+++    ..+.+|..+.|++....-.|=.    ...-||||||||+++||.+-++|+.-+|||.|
T Consensus       566 IYPdS~e~~~-~kg~~d~----dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT  640 (728)
T KOG0064|consen  566 IYPDSSEQMK-RKGYTDQ----DLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT  640 (728)
T ss_pred             ecCCcHHHHH-hcCCCHH----HHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence            55321   01 1223332    3445566665554433322211    12349999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545          266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      |+..+.....+.+..++   .|.+.|-++|+|+-
T Consensus       641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl  671 (728)
T KOG0064|consen  641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL  671 (728)
T ss_pred             cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence            99999888888877655   48999999999864

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.75  E-value=7.6e-18  Score=163.54  Aligned_cols=74  Identities=26%  Similarity=0.418  Sum_probs=67.3

Q ss_pred             cCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC
Q 005545          238 ISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~  313 (691)
                      ||+||+||++||++|..    +|+++++|||++|+|+.....+.+.+.++.++|.++|++||++.  +.+.+|+++.|..
T Consensus        78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~  155 (162)
T cd03227          78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK  155 (162)
T ss_pred             ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence            89999999999999987    78999999999999999999999999998766889999999964  4578999999864

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.73  E-value=2.6e-17  Score=196.75  Aligned_cols=136  Identities=26%  Similarity=0.428  Sum_probs=109.7

Q ss_pred             CCCCHHHHHHHHHhhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-ccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545          184 PHLTVLETLSYAALLRLPKKLT------REEKIEQAEMVIMELGLTRC-RNSVVGGPLFRGISGGERKRVSIGQEMLVNP  256 (691)
Q Consensus       184 ~~lTV~E~l~~~~~~~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P  256 (691)
                      -.+||.|.+.|.-.+.++....      .++..++++ .++.+||.+. .|+.+     ..|||||||||.||++|..+|
T Consensus       435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~-----~~LSgGE~QRv~LA~aL~~~~  508 (943)
T PRK00349        435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSGL  508 (943)
T ss_pred             hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCch-----hhCCHHHHHHHHHHHHHhhCC
Confidence            4689999988854432221100      013334454 6888899765 57666     469999999999999999997


Q ss_pred             --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHH
Q 005545          257 --SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       257 --~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~  327 (691)
                        ++++|||||+|||+..+..+.++|++|+++|.|||+++|++. ++ ..||+|++|      ++|++++.|+++++..
T Consensus       509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~-~i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~  585 (943)
T PRK00349        509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDED-TI-RAADYIVDIGPGAGVHGGEVVASGTPEEIMK  585 (943)
T ss_pred             CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEeccccCCCCCEEeeccCHHHHhc
Confidence              999999999999999999999999999888999999999975 45 579999999      8999999999988753

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.72  E-value=5.9e-17  Score=193.34  Aligned_cols=135  Identities=25%  Similarity=0.416  Sum_probs=106.3

Q ss_pred             CCCCHHHHHHHHHhhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-ccccccCCCCcccCHHHHHHHHHHHHHhhCC
Q 005545          184 PHLTVLETLSYAALLRLPKKLTR------EEKIEQAEMVIMELGLTRC-RNSVVGGPLFRGISGGERKRVSIGQEMLVNP  256 (691)
Q Consensus       184 ~~lTV~E~l~~~~~~~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P  256 (691)
                      -.|||.|.+.|...+.+......      .+..+++ +.+..+||... .++.+     ..|||||+|||.||++|+.+|
T Consensus       433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~  506 (924)
T TIGR00630       433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL  506 (924)
T ss_pred             hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence            36889998887655432211000      1112222 23677788654 45544     579999999999999999986


Q ss_pred             --CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHH
Q 005545          257 --SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVM  326 (691)
Q Consensus       257 --~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~  326 (691)
                        +++||||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||++++|      ++|++++.|+++++.
T Consensus       507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~  582 (924)
T TIGR00630       507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL  582 (924)
T ss_pred             CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence              899999999999999999999999999988999999999964 44 589999999      899999999998875

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.71  E-value=3.1e-18  Score=181.73  Aligned_cols=216  Identities=23%  Similarity=0.313  Sum_probs=152.1

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCC-CCCCc
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-RGKFS  155 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~-~~~~~  155 (691)
                      .+.|+++|.+.+..                     .+.++.|.|+.|-.|..++|+||||-||||||+-|+.|- .-|..
T Consensus       262 a~DIKiEnF~ISA~---------------------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpn  320 (807)
T KOG0066|consen  262 AMDIKIENFDISAQ---------------------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPN  320 (807)
T ss_pred             cccceeeeeeeecc---------------------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCC
Confidence            45677777666554                     346889999999999999999999999999999999863 22223


Q ss_pred             eEEEECCEeCCh-----------hccccEEEEccCCC-----CCCCCCHHHHHHH-HHhhcCCCCCCHHHHHHHHHHHHH
Q 005545          156 GKITYNGRQFSS-----------SLKRKTGFVTQDDV-----LYPHLTVLETLSY-AALLRLPKKLTREEKIEQAEMVIM  218 (691)
Q Consensus       156 G~I~~~G~~~~~-----------~~~~~igyv~Q~~~-----l~~~lTV~E~l~~-~~~~~~~~~~~~~~~~~~v~~~l~  218 (691)
                      =+|++..+++-.           .-.++...+..++.     --...|+.|-|.- +..+|..   .....+.+++.+|.
T Consensus       321 IDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILA  397 (807)
T KOG0066|consen  321 IDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILA  397 (807)
T ss_pred             CceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHh
Confidence            455555544310           00111222221111     1234577776542 2233321   12223456778899


Q ss_pred             HcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545          219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       219 ~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      -+|.+.....+..    ...|||.|-||++||||..+|-+|.|||||+.||-.....+-+.|+.+.   +|.++++||..
T Consensus       398 GLGFskEMQ~rPt----~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg  470 (807)
T KOG0066|consen  398 GLGFSKEMQERPT----TKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG  470 (807)
T ss_pred             hcCCChhHhcCCc----cccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc
Confidence            9998765544333    3589999999999999999999999999999999999999989988885   69999999964


Q ss_pred             hHHHhcCCEEEEecCCeEE-EecCHhH
Q 005545          299 SRLYRMFDKVVVLSEGSPI-YSGRAAQ  324 (691)
Q Consensus       299 ~~i~~~~D~v~~L~~G~iv-~~G~~~~  324 (691)
                       .+-..|..|+-|++-++- |.|...-
T Consensus       471 -FLD~VCtdIIHLD~qkLhyYrGNY~~  496 (807)
T KOG0066|consen  471 -FLDSVCTDIIHLDNQKLHYYRGNYTL  496 (807)
T ss_pred             -hHHHHHHHHhhhhhhhhhhhcchHHH
Confidence             588899999999987765 4455443

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.70  E-value=2.5e-16  Score=165.38  Aligned_cols=76  Identities=16%  Similarity=0.268  Sum_probs=62.2

Q ss_pred             cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC-
Q 005545          236 RGISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF-  305 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~-  305 (691)
                      +-+|+||||+++||++|+         .+|+++++||||++||+..+..+.+.|+++.   .+ ++++|+.. .+...+ 
T Consensus       182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~  256 (270)
T cd03242         182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL  256 (270)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence            448999999999999985         7999999999999999999999999998763   34 45555433 455666 


Q ss_pred             --CEEEEecCCeE
Q 005545          306 --DKVVVLSEGSP  316 (691)
Q Consensus       306 --D~v~~L~~G~i  316 (691)
                        ++++.+++|++
T Consensus       257 ~~~~i~~l~~g~i  269 (270)
T cd03242         257 RRAQIFRVDAGTL  269 (270)
T ss_pred             cCccEEEEeCcEE
Confidence              68999999985

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.69  E-value=8.3e-17  Score=161.79  Aligned_cols=156  Identities=15%  Similarity=0.080  Sum_probs=104.8

Q ss_pred             ceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHh
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAAL  197 (691)
Q Consensus       118 ~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~  197 (691)
                      ..++++.+|++++|+|||||||||||++|++.......|...       ...+..+++..|..   ..+...+++     
T Consensus        21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~-------~~~~~~i~~~dqi~---~~~~~~d~i-----   85 (202)
T cd03243          21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV-------PAESASIPLVDRIF---TRIGAEDSI-----   85 (202)
T ss_pred             eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc-------cccccccCCcCEEE---EEecCcccc-----
Confidence            344555689999999999999999999999632111122111       01122334432211   111111110     


Q ss_pred             hcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 005545          198 LRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV  277 (691)
Q Consensus       198 ~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~  277 (691)
                                                   +..     .+.++++++ |++.+.+++.+|+++++|||++|||+.....+.
T Consensus        86 -----------------------------~~~-----~s~~~~e~~-~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~  130 (202)
T cd03243          86 -----------------------------SDG-----RSTFMAELL-ELKEILSLATPRSLVLIDELGRGTSTAEGLAIA  130 (202)
T ss_pred             -----------------------------cCC-----ceeHHHHHH-HHHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence                                         011     123565555 566677889999999999999999999988876


Q ss_pred             H-HHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          278 A-TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       278 ~-~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      . +++.+.+.+.++|++||++  ++.+.+|++..+..|++...++..++
T Consensus       131 ~~ll~~l~~~~~~vi~~tH~~--~~~~~~~~~~~l~~~~~~~~~~~~~~  177 (202)
T cd03243         131 YAVLEHLLEKGCRTLFATHFH--ELADLPEQVPGVKNLHMEELITTGGL  177 (202)
T ss_pred             HHHHHHHHhcCCeEEEECChH--HHHHHhhcCCCeEEEEEEEEecCCee
Confidence            5 5677777789999999994  45678999999999999988866444

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.67  E-value=1.6e-16  Score=159.90  Aligned_cols=136  Identities=21%  Similarity=0.219  Sum_probs=98.9

Q ss_pred             ccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEE-EEccCCCCCCCCCHHH
Q 005545          112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG-FVTQDDVLYPHLTVLE  190 (691)
Q Consensus       112 ~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~ig-yv~Q~~~l~~~lTV~E  190 (691)
                      +..+.+|+++++++|++++|+||||+|||||++++++..                  ...++| ||   +.....+++.|
T Consensus        15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~------------------~la~~G~~v---pa~~~~l~~~d   73 (204)
T cd03282          15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA------------------IMAQIGCFV---PAEYATLPIFN   73 (204)
T ss_pred             CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH------------------HHHHcCCCc---chhhcCccChh
Confidence            356899999999999999999999999999999999843                  111122 33   33445567777


Q ss_pred             HHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545          191 TLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS  270 (691)
Q Consensus       191 ~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~  270 (691)
                      +|...                        ++..+..+...     +.+|+|++|+ +.+.+++.+|+++++|||++|+|+
T Consensus        74 ~I~~~------------------------~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~  123 (204)
T cd03282          74 RLLSR------------------------LSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSS  123 (204)
T ss_pred             heeEe------------------------cCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCH
Confidence            66321                        11111111111     3589999965 556678899999999999999999


Q ss_pred             HHHHHH-HHHHHHHHhCCcEEEEEeCCCc
Q 005545          271 TTAQRI-VATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       271 ~~~~~i-~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      .....+ ...++.+.+.|.++|++||+..
T Consensus       124 ~~~~~l~~~il~~l~~~~~~~i~~TH~~~  152 (204)
T cd03282         124 ADGFAISLAILECLIKKESTVFFATHFRD  152 (204)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence            876665 4578888878999999999953

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.62  E-value=1.2e-15  Score=155.12  Aligned_cols=158  Identities=20%  Similarity=0.150  Sum_probs=110.1

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      +.+.+|++++.++ ++++|+||||||||||||++++....   |+   .|..+.. .+..++++.|   +++.+++.|++
T Consensus        18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l---~~---~g~~vp~-~~~~i~~~~~---i~~~~~~~~~l   86 (216)
T cd03284          18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL---AQ---IGSFVPA-SKAEIGVVDR---IFTRIGASDDL   86 (216)
T ss_pred             ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH---hc---cCCeecc-ccceecceee---EeccCCchhhh
Confidence            4589999999988 99999999999999999999874311   11   1222221 2345777764   56777887776


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCH--HHHHHHHHHHHHhhCCCEEEEeCC---CCC
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISG--GERKRVSIGQEMLVNPSCLLLDEP---TSG  267 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~IA~aL~~~P~iLlLDEP---tsg  267 (691)
                      ..+.                                          |.  .|+++++-+...+.+|++++||||   |++
T Consensus        87 s~g~------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~  124 (216)
T cd03284          87 AGGR------------------------------------------STFMVEMVETANILNNATERSLVLLDEIGRGTST  124 (216)
T ss_pred             ccCc------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCCCCCh
Confidence            4321                                          11  122333333344579999999999   888


Q ss_pred             CCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHHH
Q 005545          268 LDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~  327 (691)
                      +|....  ...+++.+.+. +.++|++||+.  ++.+++|++..+.+|++...+..+++..
T Consensus       125 lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~~  181 (216)
T cd03284         125 YDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVVF  181 (216)
T ss_pred             HHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEEE
Confidence            887552  33455556665 88999999994  5778999988888899888777666543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=99.60  E-value=2.8e-15  Score=156.78  Aligned_cols=139  Identities=26%  Similarity=0.327  Sum_probs=98.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh-----hccccEEEEccCCCCCCCCCHHHHHHHHHhhcCC
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP  201 (691)
Q Consensus       127 e~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~-----~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~  201 (691)
                      .-++|+||||||||||+++|+|.+ .+.+|+|.++|+++..     ++.+.+++++|.+ +.+.++|.|+..        
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~-~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~--------  181 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARIL-STGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCP--------  181 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCcc-CCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccch--------
Confidence            578999999999999999999987 4679999999998842     3445678888865 334556655421        


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 005545          202 KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR  281 (691)
Q Consensus       202 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~  281 (691)
                          +.+                                |+     .......+|+++++|||++      ...+..+++
T Consensus       182 ----k~~--------------------------------~~-----~~~i~~~~P~villDE~~~------~e~~~~l~~  214 (270)
T TIGR02858       182 ----KAE--------------------------------GM-----MMLIRSMSPDVIVVDEIGR------EEDVEALLE  214 (270)
T ss_pred             ----HHH--------------------------------HH-----HHHHHhCCCCEEEEeCCCc------HHHHHHHHH
Confidence                000                                00     1223336999999999974      344555555


Q ss_pred             HHHhCCcEEEEEeCCCchH-H-----------HhcCCEEEEecCCeEEEecCHhHH
Q 005545          282 GLARGGRTVITTIHQPSSR-L-----------YRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       282 ~l~~~g~tii~~~H~p~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      .+. +|.++|+++|++... +           ..+|||+++|++|+  ..|.++++
T Consensus       215 ~~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i  267 (270)
T TIGR02858       215 ALH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV  267 (270)
T ss_pred             HHh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence            554 699999999985432 2           26799999999887  56666554

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.58  E-value=1e-14  Score=155.40  Aligned_cols=177  Identities=25%  Similarity=0.334  Sum_probs=134.8

Q ss_pred             cceeeceEEEEeCC-----eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCC
Q 005545          113 VSVLNGVSGMVKPG-----ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLT  187 (691)
Q Consensus       113 ~~iL~~vs~~i~~G-----e~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lT  187 (691)
                      +.-+.+..+.|+.|     |++..+|.||.|||||+++++|++.+...|+|-.          -.++|=||...-=..-|
T Consensus       349 ~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~----------lnVSykpqkispK~~~t  418 (592)
T KOG0063|consen  349 KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPV----------LNVSYKPQKISPKREGT  418 (592)
T ss_pred             eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcccc----------cceeccccccCccccch
Confidence            45677888888877     5789999999999999999999885443444432          23677777654333568


Q ss_pred             HHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545          188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       188 V~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg  267 (691)
                      |++.+.--  .|     +.-..-.-+.++++-|.+++..|.-+     .+|||||.|||+||..|=..+++++.|||.+-
T Consensus       419 vR~ll~~k--Ir-----~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsAy  486 (592)
T KOG0063|consen  419 VRQLLHTK--IR-----DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSAY  486 (592)
T ss_pred             HHHHHHHH--hH-----hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchhh
Confidence            88876421  11     00111235677888888888777665     57999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHH-hCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          268 LDSTTAQRIVATLRGLA-RGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~-~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      ||+..+...-+.+++.- +.++|-.++.||..- ...++|||++..
T Consensus       487 lDSeQRi~AskvikRfilhakktafvVEhdfIm-aTYladrvivf~  531 (592)
T KOG0063|consen  487 LDSEQRIIASKVIKRFILHAKKTAFVVEHDFIM-ATYLADRVIVFE  531 (592)
T ss_pred             cChHHHHHHHHHHHHHHHhccchhhhhhhHHHH-HHhhcceeEEEe
Confidence            99999999999999875 457899999999543 445889887653

>PRK00064 recF recombination protein F; Reviewed

Probab=99.48  E-value=1.2e-12  Score=143.15  Aligned_cols=77  Identities=25%  Similarity=0.344  Sum_probs=64.9

Q ss_pred             cccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC-
Q 005545          236 RGISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF-  305 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~-  305 (691)
                      ..+|+||+|++.||+.|+         .+|+|++||||+++||+..+..+++.|.++   +..+++|+|++. .+...+ 
T Consensus       272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~-~~~~~~~  347 (361)
T PRK00064        272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLE-DLADLLE  347 (361)
T ss_pred             HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChh-hhhhhhc
Confidence            458999999999999885         799999999999999999999999998765   357888988854 344443 


Q ss_pred             -CEEEEecCCeE
Q 005545          306 -DKVVVLSEGSP  316 (691)
Q Consensus       306 -D~v~~L~~G~i  316 (691)
                       ++++.+.+|++
T Consensus       348 ~~~i~~v~~G~i  359 (361)
T PRK00064        348 NAKIFHVEQGKI  359 (361)
T ss_pred             cCcEEEEeCCEE
Confidence             57899999986

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.45  E-value=4.6e-14  Score=140.05  Aligned_cols=79  Identities=19%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhC-CcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV-ATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      .+|+|++|...+.+ .+.+|+++++|||++|+|+.....+. .+++.+.++ +.++|++||++  ++.+.+|+.--+.++
T Consensus        61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~  137 (185)
T smart00534       61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNL  137 (185)
T ss_pred             HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEE
Confidence            47887776433332 34599999999999999999887765 667778774 89999999996  467888764444444


Q ss_pred             eEEE
Q 005545          315 SPIY  318 (691)
Q Consensus       315 ~iv~  318 (691)
                      +...
T Consensus       138 ~~~~  141 (185)
T smart00534      138 HMSA  141 (185)
T ss_pred             EEEE
Confidence            4443

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.44  E-value=7.4e-13  Score=134.38  Aligned_cols=132  Identities=21%  Similarity=0.170  Sum_probs=88.7

Q ss_pred             ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCC-CCCCHHHHH
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLY-PHLTVLETL  192 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~-~~lTV~E~l  192 (691)
                      .+=+|+++.=..+.+++|.||||+|||||||.++....-...|......       .-.++|..|....+ ...++.++ 
T Consensus        17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~~-   88 (213)
T cd03281          17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSSG-   88 (213)
T ss_pred             eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhhc-
Confidence            3556666542223899999999999999999998421002245544321       23467777753211 11111111 


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS--GGERKRVSIGQEMLVNPSCLLLDEPTSGLDS  270 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~  270 (691)
                                                                   +|  .-|-||++++++++.+|+++++|||++|+|+
T Consensus        89 ---------------------------------------------~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~  123 (213)
T cd03281          89 ---------------------------------------------QSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDT  123 (213)
T ss_pred             ---------------------------------------------cchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence                                                         12  3467899999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHhC---CcEEEEEeCCCc
Q 005545          271 TTAQRI-VATLRGLARG---GRTVITTIHQPS  298 (691)
Q Consensus       271 ~~~~~i-~~~L~~l~~~---g~tii~~~H~p~  298 (691)
                      .....+ ...++++.+.   +.++|++||++.
T Consensus       124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~  155 (213)
T cd03281         124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHE  155 (213)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHH
Confidence            865555 5688888764   358999999954

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.40  E-value=1.9e-13  Score=138.84  Aligned_cols=88  Identities=26%  Similarity=0.457  Sum_probs=64.8

Q ss_pred             HHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005545          211 EQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML----VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG  286 (691)
Q Consensus       211 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~  286 (691)
                      +.+.+.+...++...           .+|||||.+++||.-|+    .+.++++||||.++||...+..+.++|+++.++
T Consensus       121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~  189 (220)
T PF02463_consen  121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQ  189 (220)
T ss_dssp             HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTT
T ss_pred             ccccccccccccccc-----------cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            345556665555432           48999999999997764    467899999999999999999999999998754


Q ss_pred             CcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          287 GRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       287 g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                       .-+|++||++  ..+..+|+.+.+.
T Consensus       190 -~Q~ii~Th~~--~~~~~a~~~~~v~  212 (220)
T PF02463_consen  190 -SQFIITTHNP--EMFEDADKLIGVT  212 (220)
T ss_dssp             -SEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred             -cccccccccc--ccccccccccccc
Confidence             6789999994  5789999888664

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=99.39  E-value=1.1e-10  Score=119.86  Aligned_cols=221  Identities=18%  Similarity=0.184  Sum_probs=150.3

Q ss_pred             HHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC---C--CchH--H--HHHHHHHHHHHHHHHHHHHHHHHH-HHHhhH
Q 005545          435 RGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHS---D--RSHI--Q--DQVGLLFFFSIFWGFFPLNNAIFV-FPQERA  503 (691)
Q Consensus       435 R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~---~--~~~~--~--~r~g~lff~~~~~~~~~~~~~i~~-f~~eR~  503 (691)
                      |+++. .|++.....-+++.+++.++.|.++-+.   +  ..+.  .  --.|.+.+.....+..   .+... .-+|+.
T Consensus         1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~---~~~~~~~~~~~g   77 (236)
T TIGR01247         1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFF---SGISVIWDRQFG   77 (236)
T ss_pred             CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHH---hhhHHHHHHHhC
Confidence            44543 4666555556677777777777776432   1  1111  1  1123333222222211   11111 113333


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q 005545          504 MLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDV  583 (691)
Q Consensus       504 v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~  583 (691)
                      ++.|=+ ..=.+...|+++|.+..++..++..+++..+.|++.+++.  ..++.+++..++..++..++|.++++..++.
T Consensus        78 ~~~~~~-~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~  154 (236)
T TIGR01247        78 FLKEIL-VAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM  154 (236)
T ss_pred             HHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence            333333 3333678999999999999999999999999888877554  3455555566667778899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccceecCCC
Q 005545          584 KQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVD  661 (691)
Q Consensus       584 ~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~~g~~  661 (691)
                      +.++.+.+++..+...+||.+.+  .+|+|++|+.+++|.+|+.|++-..-.++.                      +..
T Consensus       155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~----------------------~~~  212 (236)
T TIGR01247       155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS----------------------PTF  212 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC----------------------ccc
Confidence            99999999999999999999888  999999999999999999998654333211                      012


Q ss_pred             chHHHHHHHHHHHHHHHHHHHH
Q 005545          662 NKLIDVAALTMMLVGYRLLAYV  683 (691)
Q Consensus       662 ~~w~~~~iL~~~~~~~~~l~~l  683 (691)
                      +.+.++++|+++.+++.+++..
T Consensus       213 ~~~~~~~~l~~~~~~~~~l~~~  234 (236)
T TIGR01247       213 PLEQDLLVLTLLAVIFVGIAAV  234 (236)
T ss_pred             chHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999888888887754

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=99.39  E-value=5.2e-13  Score=119.95  Aligned_cols=72  Identities=22%  Similarity=0.120  Sum_probs=60.6

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh----hccccEEEEccCCCCCCCCCH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTV  188 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~----~~~~~igyv~Q~~~l~~~lTV  188 (691)
                      +.+|+++++++++||+++|+||||||||||++++.       +|++.++|.++..    ..++.++|++|+  ++ ..|+
T Consensus         2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~-------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf-~~ti   71 (107)
T cd00820           2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI-------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GL-EIRL   71 (107)
T ss_pred             ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh-------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cc-hhhH
Confidence            35899999999999999999999999999999985       6899999998743    345567777777  44 4699


Q ss_pred             HHHHHH
Q 005545          189 LETLSY  194 (691)
Q Consensus       189 ~E~l~~  194 (691)
                      +|||.+
T Consensus        72 ~~Ni~~   77 (107)
T cd00820          72 RLNIFL   77 (107)
T ss_pred             Hhhcee
Confidence            999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.37  E-value=6.9e-13  Score=141.62  Aligned_cols=187  Identities=27%  Similarity=0.381  Sum_probs=126.6

Q ss_pred             eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEE----------ECCEeCCh--------hccc--cEEEEccCCCCC
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT----------YNGRQFSS--------SLKR--KTGFVTQDDVLY  183 (691)
Q Consensus       124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~----------~~G~~~~~--------~~~~--~igyv~Q~~~l~  183 (691)
                      +||++.+++|-||-||||-|++|+|.++++..+...          +-|.++..        .++.  +..||.|-+...
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr~~  177 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPRAV  177 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHHHH
Confidence            699999999999999999999999988543221110          01111100        0000  011111111111


Q ss_pred             CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 005545          184 PHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDE  263 (691)
Q Consensus       184 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDE  263 (691)
                       ..+|.++|.            +...++..+++++.+.|.+..++-+.     .|||||-||.+||++-+.+.++..+||
T Consensus       178 -k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFDE  239 (592)
T KOG0063|consen  178 -KGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFDE  239 (592)
T ss_pred             -HHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEecC
Confidence             113333321            11222345677888888887777664     599999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecC-----CeEEEecCHhHHHHHh
Q 005545          264 PTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE-----GSPIYSGRAAQVMDYF  329 (691)
Q Consensus       264 PtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~-----G~iv~~G~~~~~~~~f  329 (691)
                      |.+-||...+..-...++.|..-.+=||++.||.+ .+-.+.|-+..|..     |-+.---+..+...-|
T Consensus       240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniF  309 (592)
T KOG0063|consen  240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIF  309 (592)
T ss_pred             CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhh
Confidence            99999999999999999999988889999999965 46678888888863     3333333445554443

>TIGR01069 mutS2 MutS2 family protein

Probab=99.36  E-value=1.3e-12  Score=154.80  Aligned_cols=130  Identities=22%  Similarity=0.221  Sum_probs=91.1

Q ss_pred             eEEEEeCC-eEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCC-CCCCCCHHHHHHHHH
Q 005545          119 VSGMVKPG-ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDV-LYPHLTVLETLSYAA  196 (691)
Q Consensus       119 vs~~i~~G-e~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~  196 (691)
                      +|+.+.+| ++++|.||||+|||||||+++|....+..|                 .+||.... .+   .+.+.+. . 
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----------------~~Vpa~~~~~~---~~~d~i~-~-  371 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----------------IPIPANEHSEI---PYFEEIF-A-  371 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----------------CCccCCccccc---cchhhee-e-
Confidence            78888887 999999999999999999999852111122                 13333221 11   1111110 0 


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005545          197 LLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI  276 (691)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i  276 (691)
                        +    ....+   .+   .+               ....+|+|+++++.|++.+ .+|+++|+|||++|+|+.....+
T Consensus       372 --~----i~~~~---si---~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~al  423 (771)
T TIGR01069       372 --D----IGDEQ---SI---EQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSAL  423 (771)
T ss_pred             --e----cChHh---HH---hh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHH
Confidence              0    00100   11   11               1135899999999998876 89999999999999999999999


Q ss_pred             -HHHHHHHHhCCcEEEEEeCCCc
Q 005545          277 -VATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       277 -~~~L~~l~~~g~tii~~~H~p~  298 (691)
                       ..+|+.+.+.|.++|++||+..
T Consensus       424 a~aiLe~l~~~g~~viitTH~~e  446 (771)
T TIGR01069       424 AISILEYLLKQNAQVLITTHYKE  446 (771)
T ss_pred             HHHHHHHHHhcCCEEEEECChHH
Confidence             5788888888999999999954

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=99.36  E-value=3.1e-11  Score=121.54  Aligned_cols=149  Identities=18%  Similarity=0.159  Sum_probs=122.9

Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 005545          515 RLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALASVTM  594 (691)
Q Consensus       515 ~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~~~~~A~~~~~~~~  594 (691)
                      +...++++|.+..++..+++.+++..+.|++.|++..  .++.+++++++..++..++|.++++++++...+.  +.+.+
T Consensus        58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~~  133 (208)
T TIGR03062        58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVLL  133 (208)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHHH
Confidence            5567899999999999999999999999999999864  5667777788888999999999999998765443  34445


Q ss_pred             HHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccceecCCCchHHHHHHHHH
Q 005545          595 LVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTM  672 (691)
Q Consensus       595 ~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~~g~~~~w~~~~iL~~  672 (691)
                      .+.++++|.+.+  .+|+|++|+.|++|++|+.+++-...+.+.                       ....|.++++|++
T Consensus       134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~-----------------------~~~~~~~~~~L~~  190 (208)
T TIGR03062       134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN-----------------------DGTLWQAVAVLLL  190 (208)
T ss_pred             HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc-----------------------HHHHHHHHHHHHH
Confidence            566667887777  999999999999999999999876666431                       1246888999999


Q ss_pred             HHHHHHHHHHHHHHhcCC
Q 005545          673 MLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       673 ~~~~~~~l~~l~L~~~~~  690 (691)
                      +.+++.++++...|+.|+
T Consensus       191 ~~~v~~~la~~~~~~~~~  208 (208)
T TIGR03062       191 ILVVFLALSLLSARRKRR  208 (208)
T ss_pred             HHHHHHHHHHHHHhhhcC
Confidence            999999999999887664

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.34  E-value=7.7e-12  Score=127.53  Aligned_cols=134  Identities=20%  Similarity=0.155  Sum_probs=88.7

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      +.+.+|+++.+.+|++++|+||||+||||+++++++....+..|...... .      -.++|..|-   +-.+...|.+
T Consensus        18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d~~   87 (222)
T cd03287          18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S------ATLSIFDSV---LTRMGASDSI   87 (222)
T ss_pred             CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c------eEEeccceE---EEEecCcccc
Confidence            46899999999999999999999999999999999832224456544321 1      123332221   1111111111


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS--GGERKRVSIGQEMLVNPSCLLLDEPTSGLDS  270 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~  270 (691)
                      .                                          .++|  ..|-+|++-...-+.+|+++|+|||.+|.|+
T Consensus        88 ~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~  125 (222)
T cd03287          88 Q------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTST  125 (222)
T ss_pred             c------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence            0                                          0111  2234444444445568999999999999998


Q ss_pred             HHHHHH-HHHHHHHHhC-CcEEEEEeCCCc
Q 005545          271 TTAQRI-VATLRGLARG-GRTVITTIHQPS  298 (691)
Q Consensus       271 ~~~~~i-~~~L~~l~~~-g~tii~~~H~p~  298 (691)
                      .....+ ..+++.+.+. +.++|++||++.
T Consensus       126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~  155 (222)
T cd03287         126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS  155 (222)
T ss_pred             hhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence            877775 5778888875 889999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.31  E-value=2.8e-12  Score=129.90  Aligned_cols=46  Identities=13%  Similarity=0.242  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPT-----SGLDSTTAQRIVATLRGLAR  285 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPt-----sgLD~~~~~~i~~~L~~l~~  285 (691)
                      |-|++++.||++++.+|+++++||||     +|||+.+++.+.+.++++++
T Consensus       155 ~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~  205 (215)
T PTZ00132        155 NFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN  205 (215)
T ss_pred             CHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence            33999999999999999999999999     99999999999999999975

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=99.29  E-value=2.9e-11  Score=134.48  Aligned_cols=172  Identities=22%  Similarity=0.280  Sum_probs=113.7

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeC---Ch---------hccccEEEEccCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF---SS---------SLKRKTGFVTQDD  180 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~---~~---------~~~~~igyv~Q~~  180 (691)
                      ..+++++ +.+.+|+.++|+|+||+|||||+++|+|.. .+..|.|.+.|+.-   .+         .+++.+.+|.+-+
T Consensus       146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~-~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~  223 (438)
T PRK07721        146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNT-SADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSD  223 (438)
T ss_pred             hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhccc-CCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCC
Confidence            4689999 999999999999999999999999999976 46789999965433   21         2456788887643


Q ss_pred             CCCCCCCHHHHHH--HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC-HHHHHHHHHHHHHhhCCC
Q 005545          181 VLYPHLTVLETLS--YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS-GGERKRVSIGQEMLVNPS  257 (691)
Q Consensus       181 ~l~~~lTV~E~l~--~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-GGerqRv~IA~aL~~~P~  257 (691)
                      .     ++.+-..  +.+              -.+.|....-|-    |..+-   ...++ --|-+|     ++.    
T Consensus       224 ~-----~~~~r~~~~~~a--------------~~iAEyfr~~g~----~Vll~---~Dsltr~A~A~r-----Eis----  268 (438)
T PRK07721        224 Q-----PALMRIKGAYTA--------------TAIAEYFRDQGL----NVMLM---MDSVTRVAMAQR-----EIG----  268 (438)
T ss_pred             C-----CHHHHHHHHHHH--------------HHHHHHHHHCCC----cEEEE---EeChHHHHHHHH-----HHH----
Confidence            2     1222111  111              011122222221    11100   00111 011111     111    


Q ss_pred             EEEEeCC--CCCCCHHHHHHHHHHHHHHHh--CCc-----EEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          258 CLLLDEP--TSGLDSTTAQRIVATLRGLAR--GGR-----TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       258 iLlLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                       +.+.||  |+|+|+.....+.++++++.+  +|.     ||++.+||.++   .+||++..+.+|+++.++...+-
T Consensus       269 -l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~~  341 (438)
T PRK07721        269 -LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLANK  341 (438)
T ss_pred             -HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHHC
Confidence             123464  679999999999999999984  575     99999999764   78999999999999999987654

>TIGR00634 recN DNA repair protein RecN

Probab=99.27  E-value=8.5e-12  Score=144.10  Aligned_cols=77  Identities=26%  Similarity=0.384  Sum_probs=70.2

Q ss_pred             cccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          236 RGISGGERKRVSIGQEMLVN----PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~----P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      +.+||||+||++||++++..    |++||+||||+|||+.++..+.+.|+++++ +++||++||+|.  +...||++++|
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l  515 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV  515 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence            56899999999999999985    699999999999999999999999999985 799999999974  34689999999


Q ss_pred             cCCe
Q 005545          312 SEGS  315 (691)
Q Consensus       312 ~~G~  315 (691)
                      ++|.
T Consensus       516 ~k~~  519 (563)
T TIGR00634       516 EKEG  519 (563)
T ss_pred             EEcc
Confidence            8864

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=99.24  E-value=5.9e-09  Score=108.65  Aligned_cols=230  Identities=13%  Similarity=0.070  Sum_probs=150.8

Q ss_pred             HHHHHHHHHH-hhc-chhHHHHHHHHHHHHHHHHHHhhCC-CC-ch--HHHHH--HHHHHHHHHHHHHHHHHHHH-HHH-
Q 005545          430 KVLLKRGLQE-RKH-ESYSYLRIFQVLSVSILSGLLWWHS-DR-SH--IQDQV--GLLFFFSIFWGFFPLNNAIF-VFP-  499 (691)
Q Consensus       430 ~~L~~R~~~~-~r~-~~~~~~r~~~~i~~all~G~lf~~~-~~-~~--~~~r~--g~lff~~~~~~~~~~~~~i~-~f~-  499 (691)
                      ..+.+|+++. +|+ +......+++.++.-+++|..+-.. +. .+  ..+..  |++-+..++.++   ++... .+. 
T Consensus         8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~~~~g~~y~~f~~pg~l~~~~~~~~~---~~~~~~~~~~   84 (253)
T TIGR01291         8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVGSVDGVSYAAFLAAGMVATSAMTAST---FETIYATFAR   84 (253)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence            3566899875 566 5555667777777777778776542 11 11  11111  222222222111   11111 111 


Q ss_pred             -HhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          500 -QERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGA  578 (691)
Q Consensus       500 -~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a  578 (691)
                       +|+..+.|-+..-. ++..+++||++.+.-..++..++...+.+++ |..+. ...+..+.++++..++..++|.++|+
T Consensus        85 ~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a~  161 (253)
T TIGR01291        85 MRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSMLVAA  161 (253)
T ss_pred             HHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             23334444333333 6789999999999877777776655555444 44433 33444444555667777889999999


Q ss_pred             hcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccce
Q 005545          579 IIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIK  656 (691)
Q Consensus       579 ~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~  656 (691)
                      +.++.+.+..+..+++.+++.+||.+.+  ++|+|++|+.+++|+.|+.|++-..-+++.                 .  
T Consensus       162 ~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~-----------------~--  222 (253)
T TIGR01291       162 LAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP-----------------G--  222 (253)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC-----------------c--
Confidence            9999999999999999999999998887  999999999999999999999654433211                 0  


Q ss_pred             ecCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005545          657 YLGVDNKLIDVAALTMMLVGYRLLAYVTLRMR  688 (691)
Q Consensus       657 ~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~  688 (691)
                          .+.|.++++++++.+++.+++....|+.
T Consensus       223 ----~~~~~~~~~l~~~~vv~~~la~~~fr~~  250 (253)
T TIGR01291       223 ----TQVGLHLGALCLYAVVPFFISAALLRRR  250 (253)
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                1245678888888888888888877664

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=99.24  E-value=2.6e-11  Score=125.71  Aligned_cols=76  Identities=14%  Similarity=0.257  Sum_probs=64.1

Q ss_pred             CcccCHHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          235 FRGISGGE--------RKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR-IVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       235 ~~~LSGGe--------rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      .+.+|||+        +||+++||++..+++|.+|  ||+.+|+.+... ++  +.++...+.|.|+.+|+...  ...+
T Consensus       127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~--~~~~  200 (249)
T cd01128         127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAE--RRIF  200 (249)
T ss_pred             CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhh--CCCC
Confidence            35589999        9999999999999999999  999999755554 54  56665567899999999643  6899


Q ss_pred             CEEEEecCCeE
Q 005545          306 DKVVVLSEGSP  316 (691)
Q Consensus       306 D~v~~L~~G~i  316 (691)
                      |.|.+|+.|++
T Consensus       201 paI~vl~s~sr  211 (249)
T cd01128         201 PAIDILKSGTR  211 (249)
T ss_pred             CeEEEcCCCCc
Confidence            99999999986

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK10869 recombination and repair protein; Provisional

Probab=99.24  E-value=2e-11  Score=140.24  Aligned_cols=77  Identities=23%  Similarity=0.380  Sum_probs=69.9

Q ss_pred             cccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          236 RGISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      +.+||||+||++||++++.    +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|.  +...+|+.+++
T Consensus       429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v  505 (553)
T PRK10869        429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV  505 (553)
T ss_pred             hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence            4589999999999999997    5899999999999999999999999999975 689999999974  45899999999


Q ss_pred             cCCe
Q 005545          312 SEGS  315 (691)
Q Consensus       312 ~~G~  315 (691)
                      +++.
T Consensus       506 ~k~~  509 (553)
T PRK10869        506 SKET  509 (553)
T ss_pred             eccc
Confidence            8753

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.21  E-value=2e-10  Score=131.60  Aligned_cols=138  Identities=22%  Similarity=0.384  Sum_probs=103.0

Q ss_pred             CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHH------HHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCC-
Q 005545          184 PHLTVLETLSYAALLRLPKKLTREEKIEQAEMV------IMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNP-  256 (691)
Q Consensus       184 ~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P-  256 (691)
                      ..|++.|.+.|...+.+... .+...+..++++      |..+||...--.+    ....|||||.||+-+|..+=++= 
T Consensus       427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R----~a~TLSGGEaQRIRLAtqiGS~Lt  501 (935)
T COG0178         427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSR----SAGTLSGGEAQRIRLATQIGSGLT  501 (935)
T ss_pred             hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccc----cCCCcChhHHHHHHHHHHhcccce
Confidence            35778888877665543211 111112222333      4445775432111    22469999999999999997654 


Q ss_pred             -CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEe------cCCeEEEecCHhHHHHH
Q 005545          257 -SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL------SEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       257 -~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~~  328 (691)
                       =+++||||+-||-+..-.++++.|++|++.|-|+|++.||+  +..+.+|+|+=|      +.|+|++.|+++++++.
T Consensus       502 GVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~  578 (935)
T COG0178         502 GVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPEELLAN  578 (935)
T ss_pred             eeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHhC
Confidence             47899999999999999999999999999999999999994  467899999998      56899999999999863

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=99.19  E-value=2.2e-11  Score=122.98  Aligned_cols=63  Identities=30%  Similarity=0.491  Sum_probs=53.8

Q ss_pred             cccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545          236 RGISGGERKRVSIGQEMLVNP---SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P---~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      ..+|.|+||.+.|+..|...+   .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~  300 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF  300 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence            346999999999998888766   899999999999999999999999988876788999999974

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=99.18  E-value=7.2e-09  Score=106.38  Aligned_cols=220  Identities=14%  Similarity=0.139  Sum_probs=138.8

Q ss_pred             hhcchhHHHHHHHHHHHHHHHHHHhhCCC-CchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHhhCCCCC
Q 005545          440 RKHESYSYLRIFQVLSVSILSGLLWWHSD-RSHIQD-QVGLLFFFSIFWGFFPLNNAIFVFPQER--AMLIKERSSGMYR  515 (691)
Q Consensus       440 ~r~~~~~~~r~~~~i~~all~G~lf~~~~-~~~~~~-r~g~lff~~~~~~~~~~~~~i~~f~~eR--~v~~rE~~~g~Y~  515 (691)
                      .|+|.....-+.+.+++-++.+.++-+.. .+..+. -.|.+-+..+..   +....-.....||  ..+.|=+..-. +
T Consensus         2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~er~~G~l~rl~~~P~-~   77 (232)
T TIGR00025         2 LRVGAQIILTMFIPITFMVGLNLLPGGSVTHNRGATFIPVLMALAAIST---AFTGQAIAVARDRRYGALKRLGATPL-P   77 (232)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHhcCCccCCcchhHhhHHHHHHHHHHH---HHHHHHHHHHHHHHhCHHHHHhcCCC-c
Confidence            46666655555666666666666665421 112211 122222222221   1111222223333  45555555544 7


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHH
Q 005545          516 LSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLGAIIM---DVKQATALASV  592 (691)
Q Consensus       516 ~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~a~~~---~~~~A~~~~~~  592 (691)
                      +..|+++|.+..+...++..+++. +++++.|++.....+ ..++...+..+.+.+++.+++++.+   +.+.+..++.+
T Consensus        78 ~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~  155 (232)
T TIGR00025        78 RLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVANL  155 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            889999999988888776655554 556677888654322 3333334445566667777777764   55555888888


Q ss_pred             HHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccccceecCCCchHHHHHHH
Q 005545          593 TMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKYLGVDNKLIDVAAL  670 (691)
Q Consensus       593 ~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~~g~~~~w~~~~iL  670 (691)
                      +..+++++||.+.+  .+|.|++|+.+++|++|+.+++-..-.++.                      +....|.+++++
T Consensus       156 ~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~----------------------~~~~~~~~~~~l  213 (232)
T TIGR00025       156 VWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV----------------------DTFGAVRDLVVV  213 (232)
T ss_pred             HHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC----------------------ChhhHHHHHHHH
Confidence            89999999999998  999999999999999999998654432211                      112457788888


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 005545          671 TMMLVGYRLLAYVTLRM  687 (691)
Q Consensus       671 ~~~~~~~~~l~~l~L~~  687 (691)
                      +++.+++..++....||
T Consensus       214 ~~~~~v~~~la~~~~~r  230 (232)
T TIGR00025       214 LAFWVALAALAAIRLRR  230 (232)
T ss_pred             HHHHHHHHHHHHHHHhc
Confidence            98888888888777654

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=99.18  E-value=3.4e-11  Score=143.09  Aligned_cols=81  Identities=23%  Similarity=0.265  Sum_probs=64.1

Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV-ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~-~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      ..+|+|++|++.|++++ .+|+++|+|||++|+|+.....+. .+++.+.+.|.++|++||++. .....+|+..++ ++
T Consensus       389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~  465 (782)
T PRK00409        389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA  465 (782)
T ss_pred             hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence            35899999999999988 899999999999999999999885 567888778999999999953 333445544443 45


Q ss_pred             eEEEe
Q 005545          315 SPIYS  319 (691)
Q Consensus       315 ~iv~~  319 (691)
                      .+.++
T Consensus       466 ~~~~d  470 (782)
T PRK00409        466 SVEFD  470 (782)
T ss_pred             EEEEe
Confidence            55553

>TIGR00618 sbcc exonuclease SbcC

Probab=99.18  E-value=6.7e-11  Score=145.92  Aligned_cols=80  Identities=21%  Similarity=0.304  Sum_probs=73.4

Q ss_pred             CCcccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          234 LFRGISGGERKRVSIGQEMLV----------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~----------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                      .++.|||||++||+||++|+.          +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. ....
T Consensus       947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~ 1025 (1042)
T TIGR00618       947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRER 1025 (1042)
T ss_pred             CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHh
Confidence            456799999999999999986          79999999999999999999999999999888999999999964 5788


Q ss_pred             cCCEEEEecCC
Q 005545          304 MFDKVVVLSEG  314 (691)
Q Consensus       304 ~~D~v~~L~~G  314 (691)
                      ++|+|.|+..|
T Consensus      1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618      1026 IPHRILVKKTN 1036 (1042)
T ss_pred             hCCEEEEEECC
Confidence            99999999753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PHA02562 46 endonuclease subunit; Provisional

Probab=99.17  E-value=3.7e-11  Score=138.88  Aligned_cols=78  Identities=23%  Similarity=0.393  Sum_probs=69.0

Q ss_pred             CcccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh
Q 005545          235 FRGISGGERKRVSIGQEML----------VNPSCLLLDEPT-SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~----------~~P~iLlLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                      ...||||||||++||++|+          .+|+++|||||| ++||+.+...+.+.|+++  +|.|||++||++.  ...
T Consensus       466 ~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~~  541 (562)
T PHA02562        466 YASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DPQ  541 (562)
T ss_pred             hhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--chh
Confidence            3579999999999999887          599999999998 789999999999999999  5889999999964  457


Q ss_pred             cCCEEEEecC-CeE
Q 005545          304 MFDKVVVLSE-GSP  316 (691)
Q Consensus       304 ~~D~v~~L~~-G~i  316 (691)
                      .+|++++|.+ |+.
T Consensus       542 ~~d~~~~l~~~~~~  555 (562)
T PHA02562        542 KFDRHLKMEKVGRF  555 (562)
T ss_pred             hhhcEEEEEEECCe
Confidence            8999999986 553

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=99.16  E-value=2.3e-08  Score=104.03  Aligned_cols=231  Identities=13%  Similarity=0.182  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHHHHHhhCC-CC-------c--hH--HHHHHHHHHHHHHHHHHHHH
Q 005545          426 WEQFKVLLKRGLQE-RKHESYSYLRIFQVLSVSILSGLLWWHS-DR-------S--HI--QDQVGLLFFFSIFWGFFPLN  492 (691)
Q Consensus       426 ~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~all~G~lf~~~-~~-------~--~~--~~r~g~lff~~~~~~~~~~~  492 (691)
                      ++++..+++|+++. .|++.....-+++.++.-++.|.+|-.. +.       .  +.  .--.|++-+...+.++.   
T Consensus         1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~---   77 (253)
T TIGR03861         1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQ---   77 (253)
T ss_pred             ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHH---
Confidence            36789999999986 5777666667788888888888887432 10       0  11  11112222222211111   


Q ss_pred             HHHH-HHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHH
Q 005545          493 NAIF-VFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQS  571 (691)
Q Consensus       493 ~~i~-~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~s  571 (691)
                      .+.. ...+|+..+.+=+.... +...+.++|++..+-..++..+++..+.+.. |.+.....++.....+++..++..+
T Consensus        78 ~~~~~~~~r~~g~~~~l~~~p~-~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~-g~~~~~~~~l~~~~~~~l~~~~~~~  155 (253)
T TIGR03861        78 SSLSMVYDREMGSMRVLLTSPL-PRPFLLFCKLLASALISLLQVYAFLAIAALV-GVQPPVWGYVSVLPALVLVAFMLGA  155 (253)
T ss_pred             hhhHhHHhHhcCHHHHHhhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHH
Confidence            1111 12233334444444444 7788999999999888887766655554433 6655544444444455556677889


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CC---cchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcc
Q 005545          572 LGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HM---SPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLH  646 (691)
Q Consensus       572 lg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~i---p~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~  646 (691)
                      +|+++|+++++.+.+..+.++++.+++..||.+.+  .+   |+|++|+.++||+.|..|++-.. +.+.          
T Consensus       156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~----------  224 (253)
T TIGR03861       156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ----------  224 (253)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC----------
Confidence            99999999999998988888888888889998765  44   88999999999999999887433 2221          


Q ss_pred             ccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 005545          647 CSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRM  687 (691)
Q Consensus       647 c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~  687 (691)
                                     ..|..+++++++.+++.+++....|+
T Consensus       225 ---------------~~~~~~~~~~~~~~v~~~~~~~~fr~  250 (253)
T TIGR03861       225 ---------------LNLPALGWTLGATTLFTLLAFWGFDP  250 (253)
T ss_pred             ---------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence                           01445566777777777777776655

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.15  E-value=2.9e-10  Score=116.76  Aligned_cols=150  Identities=18%  Similarity=0.257  Sum_probs=91.9

Q ss_pred             EEeCCeEEEEEcCCCCcHHHH-HHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcC
Q 005545          122 MVKPGELLAMLGPSGSGKTTL-LTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL  200 (691)
Q Consensus       122 ~i~~Ge~~aliGpsGsGKSTL-L~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~  200 (691)
                      -+++|+++.|.|+|||||||| ++.+++... +  |              ..+.|+..      ..|..+.+.....+..
T Consensus        20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~-~--g--------------~~~~yi~~------e~~~~~~~~~~~~~g~   76 (230)
T PRK08533         20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQ-N--G--------------YSVSYVST------QLTTTEFIKQMMSLGY   76 (230)
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-C--C--------------CcEEEEeC------CCCHHHHHHHHHHhCC
Confidence            478999999999999999999 688887542 1  2              12345543      2345555544332211


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHH
Q 005545          201 PKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML----VNPSCLLLDEPTSGL----DSTT  272 (691)
Q Consensus       201 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgL----D~~~  272 (691)
                        ..  +       +.... +.-...+.      ...+|+++.++-.+.+.+-    .+|+++++||||+++    |+..
T Consensus        77 --~~--~-------~~~~~-~~l~~~~~------~~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~  138 (230)
T PRK08533         77 --DI--N-------KKLIS-GKLLYIPV------YPLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVA  138 (230)
T ss_pred             --ch--H-------HHhhc-CcEEEEEe------cccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHH
Confidence              10  0       11110 10000010      0135777665555544333    369999999999999    8888


Q ss_pred             HHHHHHHHHHHHhCCcEEEEEeCCCch------HHHhcCCEEEEec
Q 005545          273 AQRIVATLRGLARGGRTVITTIHQPSS------RLYRMFDKVVVLS  312 (691)
Q Consensus       273 ~~~i~~~L~~l~~~g~tii~~~H~p~~------~i~~~~D~v~~L~  312 (691)
                      ...+.+.++.++++|.|+++++|+...      .+..++|-|+.|+
T Consensus       139 ~~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~  184 (230)
T PRK08533        139 VNDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE  184 (230)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence            889999999998888888777664321      1234567777776

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=99.12  E-value=5.4e-10  Score=110.14  Aligned_cols=77  Identities=22%  Similarity=0.134  Sum_probs=64.3

Q ss_pred             cccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHhCCcEEEEEeCCCch-------
Q 005545          236 RGISGGERK------RVSIGQEMLVNPSCLLLDEPTSGLD---STTAQRIVATLRGLARGGRTVITTIHQPSS-------  299 (691)
Q Consensus       236 ~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~~~H~p~~-------  299 (691)
                      ..+|+|++|      +.........+|+++++|||++.+|   ......+.+.++.+++.|.|+|+++|+...       
T Consensus        70 ~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~~~~~~~~~  149 (187)
T cd01124          70 DEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSGLEGTGFGG  149 (187)
T ss_pred             cccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEeccccCCCcccCc
Confidence            458999998      4444555667999999999999999   888888999999998889999999998643       


Q ss_pred             -HHHhcCCEEEEec
Q 005545          300 -RLYRMFDKVVVLS  312 (691)
Q Consensus       300 -~i~~~~D~v~~L~  312 (691)
                       .+..++|.++.|+
T Consensus       150 ~~~~~~aD~ii~l~  163 (187)
T cd01124         150 GDVEYLVDGVIRLR  163 (187)
T ss_pred             CceeEeeeEEEEEE
Confidence             2568899999887

A related protein is found in archaea.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=99.11  E-value=3.9e-10  Score=114.78  Aligned_cols=134  Identities=20%  Similarity=0.189  Sum_probs=88.4

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      +.+-+|+++..++|++++|.||||+||||+++++++...-...      |..+... ...++++   +.++..+...|++
T Consensus        17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d~~   86 (218)
T cd03286          17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAK-SMRLSLV---DRIFTRIGARDDI   86 (218)
T ss_pred             CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCcc-ccEeccc---cEEEEecCccccc
Confidence            4689999999999999999999999999999999984310001      2111111 1112221   1222222222222


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS--GGERKRVSIGQEMLVNPSCLLLDEPTSGLDS  270 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~  270 (691)
                      ..                                          ++|  ..|-+|++-....+.+|+++++|||.+|+|+
T Consensus        87 ~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~  124 (218)
T cd03286          87 MK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTST  124 (218)
T ss_pred             cc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCc
Confidence            11                                          011  1234444444444578999999999999999


Q ss_pred             HHHHHHHHH-HHHHHhC-CcEEEEEeCCCc
Q 005545          271 TTAQRIVAT-LRGLARG-GRTVITTIHQPS  298 (691)
Q Consensus       271 ~~~~~i~~~-L~~l~~~-g~tii~~~H~p~  298 (691)
                      .....+... ++.+.+. +.++|++||++.
T Consensus       125 ~dg~~la~ail~~L~~~~~~~~i~~TH~~e  154 (218)
T cd03286         125 HDGYAIAHAVLEYLVKKVKCLTLFSTHYHS  154 (218)
T ss_pred             hHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence            999999887 7888875 899999999953

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13695 putative NTPase; Provisional

Probab=99.08  E-value=8.4e-11  Score=115.36  Aligned_cols=78  Identities=14%  Similarity=0.193  Sum_probs=64.1

Q ss_pred             ccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCC
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEP--TSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~~P~iLlLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G  314 (691)
                      .+||+++-+..+++..+.+|+++++|||  +.++|    ..+.+.+.++.+.|+++|+++|+.  .+...+|++..+.+|
T Consensus        78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~  151 (174)
T PRK13695         78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG  151 (174)
T ss_pred             ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence            4899999999999999999999999995  33444    445666676666789999999983  456789999999999


Q ss_pred             eEEEec
Q 005545          315 SPIYSG  320 (691)
Q Consensus       315 ~iv~~G  320 (691)
                      ++++.-
T Consensus       152 ~i~~~~  157 (174)
T PRK13695        152 RVYELT  157 (174)
T ss_pred             EEEEEc
Confidence            987764

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=99.08  E-value=3.5e-10  Score=121.18  Aligned_cols=142  Identities=18%  Similarity=0.208  Sum_probs=95.7

Q ss_pred             eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEe-CChhccccEEEEccCCC-CCCCCCHHHHHHHHH
Q 005545          119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ-FSSSLKRKTGFVTQDDV-LYPHLTVLETLSYAA  196 (691)
Q Consensus       119 vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~-~~~~~~~~igyv~Q~~~-l~~~lTV~E~l~~~~  196 (691)
                      +++.+++|+.++|.||+|||||||+++|++.+ ++..|.+.+++.. +....+..+.++.+... -..            
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~-~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~------------  203 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEI-PKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLA------------  203 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccC-CccccEEEEcCccccCCCCCCEEEEEecCCCCCcC------------
Confidence            66788999999999999999999999999977 4556777765311 10001112222211100 000            


Q ss_pred             hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 005545          197 LLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI  276 (691)
Q Consensus       197 ~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i  276 (691)
                                                              .++-    .-.++.+|-.+|+++++|||.+       .+.
T Consensus       204 ----------------------------------------~~~~----~~~l~~~Lr~~pd~ii~gE~r~-------~e~  232 (308)
T TIGR02788       204 ----------------------------------------KVTP----KDLLQSCLRMRPDRIILGELRG-------DEA  232 (308)
T ss_pred             ----------------------------------------ccCH----HHHHHHHhcCCCCeEEEeccCC-------HHH
Confidence                                                    0111    1134456778999999999996       355


Q ss_pred             HHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHHH
Q 005545          277 VATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       277 ~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~~  326 (691)
                      .+.++.+...+.+++.|+|..+  +....||+..|..|++...|.+.+.+
T Consensus       233 ~~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~  280 (308)
T TIGR02788       233 FDFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI  280 (308)
T ss_pred             HHHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence            6777777644456799999976  45679999999999988888777665

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>COG3910 Predicted ATPase [General function prediction only]

Probab=99.05  E-value=1e-09  Score=106.60  Aligned_cols=62  Identities=27%  Similarity=0.434  Sum_probs=52.0

Q ss_pred             cccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       236 ~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      ...|.||-=---+.+. ..+--+++||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-
T Consensus       128 h~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi  189 (233)
T COG3910         128 HHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI  189 (233)
T ss_pred             hhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence            3469998654444433 3567899999999999999999999999999999999999999984

>PRK15066 inner membrane transport permease; Provisional

Probab=99.03  E-value=2.8e-07  Score=96.13  Aligned_cols=237  Identities=13%  Similarity=0.151  Sum_probs=143.8

Q ss_pred             HHHHHHHHHHHHHHHh-hcchh-HHHHHHHHHHHHHHHHHHhhCC-CC-chH--HHH--HHHHHHHHHHHHHHHHHHHHH
Q 005545          425 WWEQFKVLLKRGLQER-KHESY-SYLRIFQVLSVSILSGLLWWHS-DR-SHI--QDQ--VGLLFFFSIFWGFFPLNNAIF  496 (691)
Q Consensus       425 ~~~Q~~~L~~R~~~~~-r~~~~-~~~r~~~~i~~all~G~lf~~~-~~-~~~--~~r--~g~lff~~~~~~~~~~~~~i~  496 (691)
                      .|+-++.+.+|+++.. |+... ...-+++.++..++.|.++-.. +. .+.  ...  .|++-+.....+.   ..+..
T Consensus         6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~---~~~~~   82 (257)
T PRK15066          6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSY---SNVAS   82 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            3667889999999874 44322 2233445555566666554321 11 111  111  1332222221111   11122


Q ss_pred             HHHHhhHH-HHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          497 VFPQERAM-LIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLL  575 (691)
Q Consensus       497 ~f~~eR~v-~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~  575 (691)
                      .+.++|.. ..++...--.++..+.+++++...-..++..++...+.+...|.+..  ....++..+++..+.....|.+
T Consensus        83 ~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~  160 (257)
T PRK15066         83 SFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLI  160 (257)
T ss_pred             HHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHH
Confidence            22233311 01121222347788999999988777676666655555544466543  2233333333333333345888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCccccccccc
Q 005545          576 LGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFP  653 (691)
Q Consensus       576 i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~  653 (691)
                      +|.+.++.+.+..+.++++.+++..||.+.+  ++|+|++|+.+++|+.|..|++=..-+++.                 
T Consensus       161 ~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~-----------------  223 (257)
T PRK15066        161 NAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS-----------------  223 (257)
T ss_pred             HHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC-----------------
Confidence            8888899888888999999999999998877  999999999999999999998743322110                 


Q ss_pred             cceecCCCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 005545          654 AIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQ  689 (691)
Q Consensus       654 ~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~  689 (691)
                            ....|.++++++++.+++.+++....|+.+
T Consensus       224 ------~~~~~~~l~~l~~~~~v~~~la~~~~~r~~  253 (257)
T PRK15066        224 ------DVPLWLAFAVLLVFIVVLYLLAWYLLERGR  253 (257)
T ss_pred             ------CccHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence                  013577889999999999999998887754

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=99.01  E-value=1.1e-09  Score=104.19  Aligned_cols=63  Identities=22%  Similarity=0.231  Sum_probs=49.0

Q ss_pred             cCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchH
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTS----------GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR  300 (691)
Q Consensus       238 LSGGerqRv~IA~aL~~~P~iLlLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~  300 (691)
                      .+.++.++...+++...+|+++++||+++          +.|......+.+++..+.+.+.|+|+++|.+...
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~  140 (165)
T cd01120          68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD  140 (165)
T ss_pred             CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence            35666778888889999999999999994          5555656666666666656699999999987543

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK03918 chromosome segregation protein; Provisional

Probab=99.00  E-value=8.7e-10  Score=134.13  Aligned_cols=78  Identities=29%  Similarity=0.335  Sum_probs=68.4

Q ss_pred             CCcccCHHHHHH------HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          234 LFRGISGGERKR------VSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       234 ~~~~LSGGerqR------v~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .+..|||||+++      ++||++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++  .+...||+
T Consensus       785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~--~~~~~~d~  862 (880)
T PRK03918        785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDE--ELKDAADY  862 (880)
T ss_pred             ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCH--HHHHhCCe
Confidence            346699999994      5556678899999999999999999999999999999887788999999996  35689999


Q ss_pred             EEEecC
Q 005545          308 VVVLSE  313 (691)
Q Consensus       308 v~~L~~  313 (691)
                      +++|..
T Consensus       863 ~~~l~~  868 (880)
T PRK03918        863 VIRVSL  868 (880)
T ss_pred             EEEEEe
Confidence            999984

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.99  E-value=1.1e-09  Score=134.74  Aligned_cols=79  Identities=28%  Similarity=0.283  Sum_probs=69.5

Q ss_pred             CCcccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          234 LFRGISGGERKRVSIGQEMLV--------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~~--------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      .++.|||||++|++||++|+.        +|++||+||||+|||+.+...+++.|..+++.|+||+++||.. ....++-
T Consensus       946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~-~l~~~i~ 1024 (1047)
T PRK10246        946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVE-AMKERIP 1024 (1047)
T ss_pred             CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHH-HHHHhcc
Confidence            356799999999999999996        8999999999999999999999999999998899999999974 3455666


Q ss_pred             CEEEEecC
Q 005545          306 DKVVVLSE  313 (691)
Q Consensus       306 D~v~~L~~  313 (691)
                      .+|.|-..
T Consensus      1025 ~qi~V~k~ 1032 (1047)
T PRK10246       1025 VQIKVKKI 1032 (1047)
T ss_pred             ceEEEEEC
Confidence            67777654

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=98.99  E-value=8.6e-09  Score=123.88  Aligned_cols=70  Identities=20%  Similarity=0.192  Sum_probs=61.1

Q ss_pred             hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHH--------HhcCCEEEEecCCeEEEecCH
Q 005545          253 LVNPSCLLLDEPTSGL-DSTTAQRIVATLRGLARGGRTVITTIHQPSSRL--------YRMFDKVVVLSEGSPIYSGRA  322 (691)
Q Consensus       253 ~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i--------~~~~D~v~~L~~G~iv~~G~~  322 (691)
                      ..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||++....        .+.||.+++|.+|++...|..
T Consensus       650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~~  728 (818)
T PRK13830        650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGTR  728 (818)
T ss_pred             CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccchH
Confidence            5799999999999999 799999999999999988999999999986421        368999999999998776643

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.92  E-value=5.4e-09  Score=104.96  Aligned_cols=57  Identities=21%  Similarity=0.371  Sum_probs=42.3

Q ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEec
Q 005545          247 SIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLS  312 (691)
Q Consensus       247 ~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~  312 (691)
                      +|+++|..+|+++++|||.   |..+...++    +.+..|..++.|+|.++.  .+..||++.|.
T Consensus        66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l----~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~  122 (198)
T cd01131          66 ALKAALRQDPDVILVGEMR---DLETIRLAL----TAAETGHLVMSTLHTNSA--AKTIDRIIDVF  122 (198)
T ss_pred             HHHHHhcCCcCEEEEcCCC---CHHHHHHHH----HHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence            4678899999999999996   555433333    345679999999999753  46788887664

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00606 rad50 rad50

Probab=98.89  E-value=3.6e-09  Score=133.35  Aligned_cols=69  Identities=19%  Similarity=0.316  Sum_probs=61.0

Q ss_pred             cccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCCCchHHHhc
Q 005545          236 RGISGGERK------RVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-----GGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       236 ~~LSGGerq------Rv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~~H~p~~~i~~~  304 (691)
                      ..|||||||      |++||++++.+|++|+|||||+|||+.+...+.+.|.++..     .|.+||++||++. .+..+
T Consensus      1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606      1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred             CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence            469999999      99999999999999999999999999999999999988742     3789999999964 46555


Q ss_pred             C
Q 005545          305 F  305 (691)
Q Consensus       305 ~  305 (691)
                      |
T Consensus      1277 ~ 1277 (1311)
T TIGR00606      1277 G 1277 (1311)
T ss_pred             h
Confidence            4

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01156 chromosome segregation protein; Provisional

Probab=98.88  E-value=5.8e-09  Score=127.24  Aligned_cols=77  Identities=25%  Similarity=0.301  Sum_probs=66.4

Q ss_pred             CCcccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-hC-C-cEEEEEeCCCchHHHhc
Q 005545          234 LFRGISGGERKRVSI------GQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RG-G-RTVITTIHQPSSRLYRM  304 (691)
Q Consensus       234 ~~~~LSGGerqRv~I------A~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tii~~~H~p~~~i~~~  304 (691)
                      .+..||||||+|++|      |++++.+|++++|||||+|||+.....+.++++... .. | .+||++||++.  ....
T Consensus       798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~  875 (895)
T PRK01156        798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV  875 (895)
T ss_pred             ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence            356799999999975      589999999999999999999999999999998654 33 3 48999999964  4579


Q ss_pred             CCEEEEec
Q 005545          305 FDKVVVLS  312 (691)
Q Consensus       305 ~D~v~~L~  312 (691)
                      ||+++.+.
T Consensus       876 ~d~ii~~~  883 (895)
T PRK01156        876 ADVAYEVK  883 (895)
T ss_pred             cCeEEEEE
Confidence            99999997

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.86  E-value=1.1e-08  Score=113.44  Aligned_cols=155  Identities=19%  Similarity=0.189  Sum_probs=106.6

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHH
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l  192 (691)
                      .++++++ +.+.+|+.++|+|+||+|||||+++|++.. .+..|.|.+.|+.                    ..+|.|.+
T Consensus       144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~-~~~~gvI~~iGer--------------------g~ev~e~~  201 (432)
T PRK06793        144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNA-KADINVISLVGER--------------------GREVKDFI  201 (432)
T ss_pred             CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccC-CCCeEEEEeCCCC--------------------cccHHHHH
Confidence            3578885 999999999999999999999999999966 4557776665532                    14566655


Q ss_pred             HHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh-------hCCCEEEEeCCC
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML-------VNPSCLLLDEPT  265 (691)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~-------~~P~iLlLDEPt  265 (691)
                      ....                     ..-|+.+.  ..+-  ....-|.|+|+|+..+...+       .++-++++|+||
T Consensus       202 ~~~l---------------------~~~gl~~t--vvv~--~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslT  256 (432)
T PRK06793        202 RKEL---------------------GEEGMRKS--VVVV--ATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVT  256 (432)
T ss_pred             HHHh---------------------hhccccee--EEEE--ECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchH
Confidence            4211                     11111110  0110  11346999999999998877       689999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEEecCCeEEEecC
Q 005545          266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR  321 (691)
Q Consensus       266 sgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~  321 (691)
                      +..|+.  .+|-..+.+....|.+..+.+|-  ..+   ++|.-...+|.+...+.
T Consensus       257 r~a~A~--reisl~~~e~p~~G~~~~~~s~l--~~L---~ERag~~~~GSiT~~~t  305 (432)
T PRK06793        257 RFADAR--RSVDIAVKELPIGGKTLLMESYM--KKL---LERSGKTQKGSITGIYT  305 (432)
T ss_pred             HHHHHH--HHHHHHhcCCCCCCeeeeeeccc--hhH---HHHhccCCCcceEEEEE
Confidence            999996  55555666665458888888884  223   34444456788765553

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.83  E-value=2.6e-08  Score=102.47  Aligned_cols=161  Identities=18%  Similarity=0.208  Sum_probs=95.8

Q ss_pred             eece-EEEEeCCeEEEEEcCCCCcHHHHHHHHHc-CCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545          116 LNGV-SGMVKPGELLAMLGPSGSGKTTLLTALAG-RLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS  193 (691)
Q Consensus       116 L~~v-s~~i~~Ge~~aliGpsGsGKSTLL~~L~G-~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~  193 (691)
                      |+.+ .+=+++|.++.|.|++|||||||...++- ... . .+               .+.|+..+.      +..+.+.
T Consensus        14 LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~-g~---------------~~~y~~~e~------~~~~~~~   70 (234)
T PRK06067         14 LDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK-Q-GK---------------KVYVITTEN------TSKSYLK   70 (234)
T ss_pred             HHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh-C-CC---------------EEEEEEcCC------CHHHHHH
Confidence            4443 45689999999999999999999988752 121 1 12               234444321      2333222


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---C
Q 005545          194 YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV--NPSCLLLDEPTSG---L  268 (691)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~--~P~iLlLDEPtsg---L  268 (691)
                      -...+.    ..-.       +.+. .|.-...+..+.  .....|.++++.+.....++.  +|+++++||||+.   +
T Consensus        71 ~~~~~g----~~~~-------~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~  136 (234)
T PRK06067         71 QMESVK----IDIS-------DFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA  136 (234)
T ss_pred             HHHHCC----CChh-------HHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence            111111    1100       0000 011111111110  012247788999999999997  9999999999964   4


Q ss_pred             CHHHHHHHHHHHHHHHhCCcEEEEEeCCCch------HHHhcCCEEEEecC
Q 005545          269 DSTTAQRIVATLRGLARGGRTVITTIHQPSS------RLYRMFDKVVVLSE  313 (691)
Q Consensus       269 D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~------~i~~~~D~v~~L~~  313 (691)
                      |.....++++.++.++++|.|+++++|+...      .+..++|-++.|+.
T Consensus       137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~~  187 (234)
T PRK06067        137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLRA  187 (234)
T ss_pred             CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEEe
Confidence            5555556666677777789999999998643      14567777777763

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.79  E-value=4e-09  Score=116.66  Aligned_cols=51  Identities=20%  Similarity=0.303  Sum_probs=44.7

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce-EEEECCEeCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG-KITYNGRQFS  166 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G-~I~~~G~~~~  166 (691)
                      +.+|++||+++++||+++|+|||||||||||+  +|+.. +.+| +|.++|+++.
T Consensus        19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~-~~sGg~I~ldg~~~~   70 (504)
T TIGR03238        19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK-FSEGYEFFLDATHSF   70 (504)
T ss_pred             HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC-CCCCCEEEECCEECC
Confidence            46899999999999999999999999999999  66554 4456 8999999875

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.79  E-value=6.8e-09  Score=129.55  Aligned_cols=76  Identities=18%  Similarity=0.312  Sum_probs=66.6

Q ss_pred             CCcccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEE
Q 005545          234 LFRGISGGERKRVSIGQEML----VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~----~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      .+..||||||+|++||++++    .+|+++||||||+|||+.+...+.++|+.+++ +.++|++||++..  ...||+++
T Consensus      1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168      1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred             cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence            34679999999999999984    57799999999999999999999999999976 4789999999753  57899998


Q ss_pred             Eec
Q 005545          310 VLS  312 (691)
Q Consensus       310 ~L~  312 (691)
                      .+.
T Consensus      1163 ~~~ 1165 (1179)
T TIGR02168      1163 GVT 1165 (1179)
T ss_pred             eee
Confidence            664

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.78  E-value=1.7e-08  Score=113.36  Aligned_cols=150  Identities=23%  Similarity=0.297  Sum_probs=93.9

Q ss_pred             ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS  193 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~  193 (691)
                      .++++.+..+.+|++++++||||+||||++..|++++. ...|.             +++++|.+|.   ...++.|+|.
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~-~~~G~-------------~kV~LI~~Dt---~RigA~EQLr  306 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV-MRHGA-------------SKVALLTTDS---YRIGGHEQLR  306 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH-HhcCC-------------CeEEEEeCCc---cchhHHHHHH
Confidence            35667777888999999999999999999999998652 11231             2578888876   3578999999


Q ss_pred             HHHhhc-CCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCC
Q 005545          194 YAALLR-LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERK-RVSIGQEMLVNP-----SCLLLDEPTS  266 (691)
Q Consensus       194 ~~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq-Rv~IA~aL~~~P-----~iLlLDEPts  266 (691)
                      +.+... .+..    ......+...+..+|.+.....+..     ...+++. .+.-..+++.++     .+|+||.++.
T Consensus       307 ~~AeilGVpv~----~~~~~~Dl~~aL~~L~d~d~VLIDT-----aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~  377 (484)
T PRK06995        307 IYGKILGVPVH----AVKDAADLRLALSELRNKHIVLIDT-----IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSH  377 (484)
T ss_pred             HHHHHhCCCee----ccCCchhHHHHHHhccCCCeEEeCC-----CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCc
Confidence            766543 2211    1112233344556676655444432     2222222 234444555554     6899999988


Q ss_pred             CCCHHHHHHHHHHHHHHHhCCcEEEEEeC
Q 005545          267 GLDSTTAQRIVATLRGLARGGRTVITTIH  295 (691)
Q Consensus       267 gLD~~~~~~i~~~L~~l~~~g~tii~~~H  295 (691)
                      +      ..+.+.++.....+.+-++.|+
T Consensus       378 ~------~~l~~i~~~f~~~~~~g~IlTK  400 (484)
T PRK06995        378 G------DTLNEVVQAYRGPGLAGCILTK  400 (484)
T ss_pred             H------HHHHHHHHHhccCCCCEEEEeC
Confidence            7      4455556666555555444454

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.76  E-value=2.5e-07  Score=84.56  Aligned_cols=118  Identities=31%  Similarity=0.339  Sum_probs=76.3

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL  204 (691)
Q Consensus       125 ~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~  204 (691)
                      +|..+.|.||+|+||||+++.|+..+.....+-+.++.........                 ....             
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-------------   50 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVL-----------------DQLL-------------   50 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCH-----------------HHHH-------------
Confidence            4678999999999999999999987642211344444432211000                 0000             


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 005545          205 TREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA------  278 (691)
Q Consensus       205 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~------  278 (691)
                                   ....   ..       ......+++..+..++++--.+|+++++||+..-.+.........      
T Consensus        51 -------------~~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~  107 (148)
T smart00382       51 -------------LIIV---GG-------KKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL  107 (148)
T ss_pred             -------------hhhh---hc-------cCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence                         0000   00       012357788888888888877899999999999999998887765      


Q ss_pred             HHHHHHhCCcEEEEEeC
Q 005545          279 TLRGLARGGRTVITTIH  295 (691)
Q Consensus       279 ~L~~l~~~g~tii~~~H  295 (691)
                      ........+..+|+++|
T Consensus       108 ~~~~~~~~~~~~i~~~~  124 (148)
T smart00382      108 LLLLKSEKNLTVILTTN  124 (148)
T ss_pred             HHHHHhcCCCEEEEEeC
Confidence            22223345788999988

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.76  E-value=4.7e-08  Score=100.94  Aligned_cols=136  Identities=23%  Similarity=0.405  Sum_probs=84.0

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECC-EeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCCCC
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG-RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL  204 (691)
Q Consensus       126 Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G-~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~~~  204 (691)
                      |++..|+||+|+|||||.--++=-..   +|.=++.+ ...  .....+-|+.=|+                        
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~va---~G~~~~g~~~~~--~~~~~Vlyi~~Ed------------------------   51 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAMA---LGKNLFGGGLKV--TEPGRVVYLSAED------------------------   51 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHHh---cCccccCCcccc--CCCceEEEEECCC------------------------
Confidence            67889999999999999987763221   22211111 110  1122344444221                        


Q ss_pred             CHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC--
Q 005545          205 TREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQ----------------EMLVNPSCLLLDEPTS--  266 (691)
Q Consensus       205 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~----------------aL~~~P~iLlLDEPts--  266 (691)
                      +..+..+++..+...+++.+..+...       ..+|+.|++.+++                ....+|+++++| |++  
T Consensus        52 ~~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~  123 (239)
T cd01125          52 PREEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSF  123 (239)
T ss_pred             CHHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHh
Confidence            22333445556666665543333222       2345555554443                335799999999 765  


Q ss_pred             ----CCCHHHHHHHHHHHHHHHhC-CcEEEEEeCCCc
Q 005545          267 ----GLDSTTAQRIVATLRGLARG-GRTVITTIHQPS  298 (691)
Q Consensus       267 ----gLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~  298 (691)
                          .+|+.....+++.|++++++ |.|||+++|...
T Consensus       124 ~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K  160 (239)
T cd01125         124 HGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK  160 (239)
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence                47999999999999999864 999999999864

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK02224 chromosome segregation protein; Provisional

Probab=98.69  E-value=3.3e-08  Score=120.41  Aligned_cols=77  Identities=31%  Similarity=0.439  Sum_probs=66.6

Q ss_pred             CcccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEEeCCCchHH
Q 005545          235 FRGISGGERK------RVSIGQEMLVN-----P-SCLLLDEPTSGLDSTTAQRIVATLRGLARGGR-TVITTIHQPSSRL  301 (691)
Q Consensus       235 ~~~LSGGerq------Rv~IA~aL~~~-----P-~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tii~~~H~p~~~i  301 (691)
                      +..||||||+      |++||++++.+     | +++++||||++||+.....+.++|+.+.+.|. +||++||++.  .
T Consensus       779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~--~  856 (880)
T PRK02224        779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDE--L  856 (880)
T ss_pred             hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChH--H
Confidence            4579999999      89999998864     3 67999999999999999999999999987664 8999999974  3


Q ss_pred             HhcCCEEEEecC
Q 005545          302 YRMFDKVVVLSE  313 (691)
Q Consensus       302 ~~~~D~v~~L~~  313 (691)
                      ...+|+++.+.+
T Consensus       857 ~~~ad~~~~~~~  868 (880)
T PRK02224        857 VGAADDLVRVEK  868 (880)
T ss_pred             HHhcCeeEEeec
Confidence            468999999964

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=98.68  E-value=1.7e-06  Score=89.63  Aligned_cols=166  Identities=22%  Similarity=0.284  Sum_probs=121.4

Q ss_pred             hhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q 005545          501 ERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLLG-AI  579 (691)
Q Consensus       501 eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i~-a~  579 (691)
                      ++..+.|=..+-..+ ..+++++.+...-...+...+...++.+..|.. ....+..+..++.+..+...++|.+++ ..
T Consensus       116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~  193 (286)
T COG0842         116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGVP-FLGSLLLLLLLLLLLLLATVALGLLLSTFA  193 (286)
T ss_pred             hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555555543 566777777776666666666666666666632 333455555566666777778888666 36


Q ss_pred             cCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcccccccccccee
Q 005545          580 IMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPAIKY  657 (691)
Q Consensus       580 ~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~~~~  657 (691)
                      ..+.+.+..++.++..++..++|.+.+  .+|.|++|+.+++|..|+.+++-.....+. .                   
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~-~-------------------  253 (286)
T COG0842         194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW-R-------------------  253 (286)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC-c-------------------
Confidence            677888888898999999999999998  999999999999999999999866655432 0                   


Q ss_pred             cCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          658 LGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       658 ~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~  690 (691)
                        ....|.++++++++.+++.+++...+|+.++
T Consensus       254 --~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~  284 (286)
T COG0842         254 --NDGIWISLLILLLFAVVFLLLGLLLLRRRRK  284 (286)
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              0126888999999999999999999988654

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.67  E-value=3.3e-08  Score=123.52  Aligned_cols=76  Identities=17%  Similarity=0.268  Sum_probs=67.6

Q ss_pred             CcccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCEEEE
Q 005545          235 FRGISGGERKRVSIGQEMLV----NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       235 ~~~LSGGerqRv~IA~aL~~----~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~~  310 (691)
                      +..||||||++++||++++.    .|++++||||++|||+.....+.++|+++++ +..+|++||++.  ....||+++.
T Consensus      1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~~ 1148 (1164)
T TIGR02169      1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAIG 1148 (1164)
T ss_pred             chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeEe
Confidence            45799999999999999985    6799999999999999999999999999876 478999999963  5689999988


Q ss_pred             ecC
Q 005545          311 LSE  313 (691)
Q Consensus       311 L~~  313 (691)
                      +..
T Consensus      1149 ~~~ 1151 (1164)
T TIGR02169      1149 VTM 1151 (1164)
T ss_pred             EEE
Confidence            764

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR01248 drrC daunorubicin resistance protein C

Probab=98.58  E-value=2.1e-06  Score=82.55  Aligned_cols=130  Identities=10%  Similarity=-0.007  Sum_probs=94.3

Q ss_pred             HHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccH--HHHHHHHHHHHHHHHHHHHHHH
Q 005545          497 VFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSL--ITFLLTLSIILFNVLVAQSLGL  574 (691)
Q Consensus       497 ~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~--~~F~~f~~~~~l~~~~~~slg~  574 (691)
                      ..-+|+..+.|-+..-. +++.|+++|++...-..+++.++..++.+.+ |.+.+.  ...+.++++..+..+....++.
T Consensus        13 ~~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~   90 (152)
T TIGR01248        13 TIDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVM   90 (152)
T ss_pred             HHHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34467778888887777 6789999999999999999988877777544 887653  2233333333444445555666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHH
Q 005545          575 LLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLV  629 (691)
Q Consensus       575 ~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~  629 (691)
                      .++...++.+. .....+++++....+|.+.+  ++|+|++|+.+++|+.|+.+++=
T Consensus        91 ~~a~~~~~~~~-~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R  146 (152)
T TIGR01248        91 AMALRKEGRFA-MEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA  146 (152)
T ss_pred             HHHHHcCCHHH-HHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence            66555565554 33456677777777887787  99999999999999999999863

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.58  E-value=4.3e-07  Score=98.88  Aligned_cols=124  Identities=23%  Similarity=0.398  Sum_probs=76.0

Q ss_pred             EeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhhcCCC
Q 005545          123 VKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPK  202 (691)
Q Consensus       123 i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~~~~~  202 (691)
                      .+++.++.|.||+||||||++++|.+.+..+..|.|.....++........+.+.|..                      
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e----------------------  176 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE----------------------  176 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc----------------------
Confidence            4578899999999999999999999865333356665433322110000000111100                      


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005545          203 KLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG  282 (691)
Q Consensus       203 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~  282 (691)
                                       .|..             ..+    -.-+++++|-.+|+++++||+.   |+.++...++    
T Consensus       177 -----------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----  215 (343)
T TIGR01420       177 -----------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT----  215 (343)
T ss_pred             -----------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----
Confidence                             0100             001    1123566888999999999997   8888765444    


Q ss_pred             HHhCCcEEEEEeCCCchHHHhcCCEEEEe
Q 005545          283 LARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       283 l~~~g~tii~~~H~p~~~i~~~~D~v~~L  311 (691)
                      .+..|.+++.|+|-.+.  ....+|++-|
T Consensus       216 aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~  242 (343)
T TIGR01420       216 AAETGHLVFGTLHTNSA--AQTIERIIDV  242 (343)
T ss_pred             HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence            35679999999999653  4556666544

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=98.57  E-value=2.5e-08  Score=102.02  Aligned_cols=164  Identities=20%  Similarity=0.233  Sum_probs=83.9

Q ss_pred             eece-EEEEeCCeEEEEEcCCCCcHHHHHHHHH--cCCCCCCceEEEECCEeCChh---ccccEEEEccCCCCCCCCCHH
Q 005545          116 LNGV-SGMVKPGELLAMLGPSGSGKTTLLTALA--GRLRGKFSGKITYNGRQFSSS---LKRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       116 L~~v-s~~i~~Ge~~aliGpsGsGKSTLL~~L~--G~~~~~~~G~I~~~G~~~~~~---~~~~igyv~Q~~~l~~~lTV~  189 (691)
                      |+++ .+=+++|++++|.|++|+|||||...++  +..  +-.+.+++......+.   ..+..|+.+|+....+.+.+.
T Consensus         9 LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~--~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~   86 (229)
T TIGR03881         9 LDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLR--DGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVII   86 (229)
T ss_pred             HHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHh--cCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEE
Confidence            5553 4568999999999999999999988655  322  2245566665332221   122455555543222222222


Q ss_pred             HHHHHHH--hhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 005545          190 ETLSYAA--LLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       190 E~l~~~~--~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsg  267 (691)
                      |.+....  ... ....+.++..++++++++..++..                        .+.++-.+..+++|||+  
T Consensus        87 d~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~------------------------~~vvIDsl~~l~~~~~~--  139 (229)
T TIGR03881        87 DALMKEKEDEWS-LRELSIEELLNKVIEAKKYLGYGH------------------------ARLVIDSMSAFWLDKPA--  139 (229)
T ss_pred             Eccccccccccc-cccCCHHHHHHHHHHHHHhhccCc------------------------eEEEecCchhhhccChH--
Confidence            2110000  000 012233333444444444433210                        11222233444445553  


Q ss_pred             CCHHHHHHHHHHHHH-HHhCCcEEEEEeCCCch-------HHHhcCCEEEEec
Q 005545          268 LDSTTAQRIVATLRG-LARGGRTVITTIHQPSS-------RLYRMFDKVVVLS  312 (691)
Q Consensus       268 LD~~~~~~i~~~L~~-l~~~g~tii~~~H~p~~-------~i~~~~D~v~~L~  312 (691)
                          ...++...|++ +++.|.|+|+++|....       .+..++|.|+.|+
T Consensus       140 ----~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~  188 (229)
T TIGR03881       140 ----MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR  188 (229)
T ss_pred             ----HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence                33444444554 45569999999996431       2456788888887

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.56  E-value=3.3e-09  Score=120.49  Aligned_cols=165  Identities=20%  Similarity=0.187  Sum_probs=99.8

Q ss_pred             eece-EEEEeCCeEEEEEcCCCCcHHHHHHHH--HcCCCCCCceEEEECCEeCChhc---cccEEEEccCCCCCCCCCHH
Q 005545          116 LNGV-SGMVKPGELLAMLGPSGSGKTTLLTAL--AGRLRGKFSGKITYNGRQFSSSL---KRKTGFVTQDDVLYPHLTVL  189 (691)
Q Consensus       116 L~~v-s~~i~~Ge~~aliGpsGsGKSTLL~~L--~G~~~~~~~G~I~~~G~~~~~~~---~~~igyv~Q~~~l~~~lTV~  189 (691)
                      |+.+ .+=+.+|..+.|.|++|||||||..-.  .|... .-+.-+++...+-...+   .+..|+-.++..--.     
T Consensus        10 LD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~-~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g-----   83 (484)
T TIGR02655        10 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH-FDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEG-----   83 (484)
T ss_pred             HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-CCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcC-----
Confidence            5554 567899999999999999999998765  34322 12345555544332222   123454443211000     


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCC
Q 005545          190 ETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIG--QEMLVNPSCLLLDEPTSG  267 (691)
Q Consensus       190 E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA--~aL~~~P~iLlLDEPtsg  267 (691)
                       ++.+   ....   ...    ....+++.+++.+..+...     +.+|+|++|||.|+  .+|...|+..        
T Consensus        84 -~l~~---~~~~---~~~----~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~--------  139 (484)
T TIGR02655        84 -KLFI---LDAS---PDP----EGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV--------  139 (484)
T ss_pred             -ceEE---EecC---chh----ccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch--------
Confidence             0000   0000   000    0111233444444444333     35899999999999  6666665543        


Q ss_pred             CCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchH--------HHhcCCEEEEec
Q 005545          268 LDSTTAQRIVATLRGLARGGRTVITTIHQPSSR--------LYRMFDKVVVLS  312 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~--------i~~~~D~v~~L~  312 (691)
                        ...+..+.++++.+++.|+|+|+++|++...        ...++|.|+.|+
T Consensus       140 --~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~  190 (484)
T TIGR02655       140 --SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR  190 (484)
T ss_pred             --HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence              5677889999999988899999999986421        145889999987

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13891 conjugal transfer protein TrbE; Provisional

Probab=98.56  E-value=3.9e-07  Score=110.20  Aligned_cols=69  Identities=19%  Similarity=0.216  Sum_probs=55.1

Q ss_pred             HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHh--cCCEEEEecCCeEE
Q 005545          248 IGQEMLVNPSCLLLDEPTSGL-DSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR--MFDKVVVLSEGSPI  317 (691)
Q Consensus       248 IA~aL~~~P~iLlLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~--~~D~v~~L~~G~iv  317 (691)
                      |++++..+|+++++|||+.+| |+..+..+.+.++.+++.|.+++++||++.. +.+  .++.++-....++.
T Consensus       680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d-~~~s~i~~~ilen~~t~I~  751 (852)
T PRK13891        680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSD-AANSGILDVIVESTATKIF  751 (852)
T ss_pred             HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HhhCchHHHHHHcCCccee
Confidence            677888999999999999999 7999999999999999889999999999764 433  33434344444444

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.54  E-value=8.4e-07  Score=99.15  Aligned_cols=174  Identities=23%  Similarity=0.278  Sum_probs=107.5

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCCh------------hccccEEEEccCC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS------------SLKRKTGFVTQDD  180 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~------------~~~~~igyv~Q~~  180 (691)
                      ..+++++ +.+.+||.++|+|+||+|||||+++|+|.. .+..|.+...|..-.+            .+++.+-++.+-+
T Consensus       151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~-~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d  228 (440)
T TIGR01026       151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNT-EADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD  228 (440)
T ss_pred             eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCC-CCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence            5689999 999999999999999999999999999976 3556766665543321            0122223333222


Q ss_pred             CCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccC-HHHHHHHHHHHHHhhCCCEE
Q 005545          181 VLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS-GGERKRVSIGQEMLVNPSCL  259 (691)
Q Consensus       181 ~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS-GGerqRv~IA~aL~~~P~iL  259 (691)
                      .     ++.+-  +    +      .....-.+.+.+...|-    |..+   ....++ --|-+| .|+         +
T Consensus       229 ~-----~p~~r--~----~------~~~~a~t~AE~frd~G~----~Vll---~~DslTr~A~A~R-Eis---------l  274 (440)
T TIGR01026       229 Q-----SPLLR--L----K------GAYVATAIAEYFRDQGK----DVLL---LMDSVTRFAMAQR-EIG---------L  274 (440)
T ss_pred             C-----CHHHH--H----H------HHHHHHHHHHHHHHCCC----CEEE---EEeChHHHHHHHH-HHH---------H
Confidence            1     11111  0    0      00111112222323342    1111   001121 112222 111         3


Q ss_pred             EEeCC--CCCCCHHHHHHHHHHHHHHHhCCc-------EEEEEeCCCchHHHhcCCEEEEecCCeEEEecCHhHH
Q 005545          260 LLDEP--TSGLDSTTAQRIVATLRGLARGGR-------TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV  325 (691)
Q Consensus       260 lLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tii~~~H~p~~~i~~~~D~v~~L~~G~iv~~G~~~~~  325 (691)
                      .+.||  +.|+|+.....+.+++.+....+.       ||++.+||..+   .++|++..+.+|+++.+....+.
T Consensus       275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~  346 (440)
T TIGR01026       275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR  346 (440)
T ss_pred             hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence            45686  459999999999999999887667       88888999643   57899999999999999877655

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.52  E-value=1.1e-07  Score=105.51  Aligned_cols=170  Identities=22%  Similarity=0.254  Sum_probs=105.8

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCc---eEEEECCEeCCh----------hccccEEEEccC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS---GKITYNGRQFSS----------SLKRKTGFVTQD  179 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~---G~I~~~G~~~~~----------~~~~~igyv~Q~  179 (691)
                      ..+|+++ +.+.+||.++|+|+||+|||||+++|+|... ++.   |.|-.+|.++..          ..|..+++++|+
T Consensus       143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~-~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d  220 (434)
T PRK07196        143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ-ADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD  220 (434)
T ss_pred             eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC-CCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence            5699999 9999999999999999999999999999764 333   445555544432          124478999999


Q ss_pred             CCCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHH-HHHHHHHhhCCCE
Q 005545          180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKR-VSIGQEMLVNPSC  258 (691)
Q Consensus       180 ~~l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR-v~IA~aL~~~P~i  258 (691)
                      ...+..+++.|++.+.+.+.....       +.|--+++  .+.+.+               +-+| ++           
T Consensus       221 ~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a---------------~A~REis-----------  265 (434)
T PRK07196        221 ESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYA---------------MAQREIA-----------  265 (434)
T ss_pred             CChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHH---------------hhhhHHH-----------
Confidence            999999999999887665321110       00000000  001000               1111 11           


Q ss_pred             EEEeCC--CCCCCHHHHHHHHHHHHHHHh---CC-cEEEEEeCCCchHHH-hcCCEEEEecCCeEEEe
Q 005545          259 LLLDEP--TSGLDSTTAQRIVATLRGLAR---GG-RTVITTIHQPSSRLY-RMFDKVVVLSEGSPIYS  319 (691)
Q Consensus       259 LlLDEP--tsgLD~~~~~~i~~~L~~l~~---~g-~tii~~~H~p~~~i~-~~~D~v~~L~~G~iv~~  319 (691)
                      +.+.||  +.|-.+..-..+-+++.+..+   .| .|.+.+..-+.+++. -++|.+.-+-+|+++..
T Consensus       266 l~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLs  333 (434)
T PRK07196        266 LSLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLS  333 (434)
T ss_pred             HhcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEc
Confidence            123454  236777777777777777532   23 466666544433221 26777777888998874

>TIGR00611 recf recF protein

Probab=98.48  E-value=2.2e-07  Score=101.91  Aligned_cols=59  Identities=24%  Similarity=0.291  Sum_probs=54.7

Q ss_pred             ccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545          237 GISGGERKRVSIGQEMLV---------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~~---------~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      .+|.||+|++.||..|+.         +|+|||||||+++||+..+..+++.|++.   |..+++|+|++.
T Consensus       275 ~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~  342 (365)
T TIGR00611       275 FASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD  342 (365)
T ss_pred             hcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence            489999999999999999         99999999999999999999999999764   679999999864

All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.47  E-value=3.7e-07  Score=90.70  Aligned_cols=81  Identities=23%  Similarity=0.110  Sum_probs=58.9

Q ss_pred             eeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCC-hhccccEEEEccCC--CCCCCCCHHHH
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS-SSLKRKTGFVTQDD--VLYPHLTVLET  191 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~-~~~~~~igyv~Q~~--~l~~~lTV~E~  191 (691)
                      ..+=+.+.+++|+.++|+||||||||||+++|+|.++ +..|.|.+++..-. ...+..++++.|.+  ...+..|+.+.
T Consensus        14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~-~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (186)
T cd01130          14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP-PDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADL   92 (186)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC-CCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHH
Confidence            3445566789999999999999999999999999874 67899999874321 12234566666544  34566788887


Q ss_pred             HHHHH
Q 005545          192 LSYAA  196 (691)
Q Consensus       192 l~~~~  196 (691)
                      +..+.
T Consensus        93 l~~~l   97 (186)
T cd01130          93 LRSAL   97 (186)
T ss_pred             HHHHh
Confidence            76554

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK14079 recF recombination protein F; Provisional

Probab=98.40  E-value=5.7e-07  Score=98.15  Aligned_cols=75  Identities=19%  Similarity=0.239  Sum_probs=62.6

Q ss_pred             ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcCCE
Q 005545          237 GISGGERKRVSIGQEML---------VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       237 ~LSGGerqRv~IA~aL~---------~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      -+|+||+|++.+|..|+         .+|++++||||+++||...+..+.+.|....   .++|.+++.|     ..+|+
T Consensus       263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~---q~~it~t~~~-----~~~~~  334 (349)
T PRK14079        263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP---QAIVAGTEAP-----PGAAL  334 (349)
T ss_pred             hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC---cEEEEcCCCC-----CCCce
Confidence            37999999999999998         8999999999999999999999998886542   3555555543     57899


Q ss_pred             EEEecCCeEEEe
Q 005545          308 VVVLSEGSPIYS  319 (691)
Q Consensus       308 v~~L~~G~iv~~  319 (691)
                      ++.+.+|++.-.
T Consensus       335 ~~~~~~~~~~~~  346 (349)
T PRK14079        335 TLRIEAGVFTPE  346 (349)
T ss_pred             EEEEeccEecCC
Confidence            999999886533

>PLN03210 Resistant to P

Probab=98.37  E-value=1e-06  Score=110.33  Aligned_cols=162  Identities=15%  Similarity=0.232  Sum_probs=90.6

Q ss_pred             eEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 005545          119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL  198 (691)
Q Consensus       119 vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~  198 (691)
                      +++..+++++++|+|++|+|||||++++.+++....+|.+++++..+.... ..  +-.++...       .+...    
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-~~--~~~~~~~~-------~~~~~----  265 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-EI--YSSANPDD-------YNMKL----  265 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-hh--cccccccc-------cchhH----
Confidence            456778899999999999999999999988765556899998763221100 00  00000000       00000    


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 005545          199 RLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA  278 (691)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~  278 (691)
                              ....+.+.++++..++.      +.     . .++.|+|      |..++-+|+||+-    |..   ..++
T Consensus       266 --------~l~~~~l~~il~~~~~~------~~-----~-~~~~~~~------L~~krvLLVLDdv----~~~---~~l~  312 (1153)
T PLN03210        266 --------HLQRAFLSEILDKKDIK------IY-----H-LGAMEER------LKHRKVLIFIDDL----DDQ---DVLD  312 (1153)
T ss_pred             --------HHHHHHHHHHhCCCCcc------cC-----C-HHHHHHH------HhCCeEEEEEeCC----CCH---HHHH
Confidence                    00112233444433331      11     1 2566666      3355667889984    333   3344


Q ss_pred             HHHHHH---hCCcEEEEEeCCCchHHHhc-CCEEEEecCCeEEEecCHhHHHHHhhhcCC
Q 005545          279 TLRGLA---RGGRTVITTIHQPSSRLYRM-FDKVVVLSEGSPIYSGRAAQVMDYFGSIGY  334 (691)
Q Consensus       279 ~L~~l~---~~g~tii~~~H~p~~~i~~~-~D~v~~L~~G~iv~~G~~~~~~~~f~~~g~  334 (691)
                      .|+...   ..|.+||+|||+.. .+... +|+++.+..      -+.+++.+.|...-|
T Consensus       313 ~L~~~~~~~~~GsrIIiTTrd~~-vl~~~~~~~~~~v~~------l~~~ea~~LF~~~Af  365 (1153)
T PLN03210        313 ALAGQTQWFGSGSRIIVITKDKH-FLRAHGIDHIYEVCL------PSNELALEMFCRSAF  365 (1153)
T ss_pred             HHHhhCccCCCCcEEEEEeCcHH-HHHhcCCCeEEEecC------CCHHHHHHHHHHHhc
Confidence            444433   34889999999953 23222 577665531      134667777766544

syringae 6; Provisional

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.36  E-value=8.9e-07  Score=98.45  Aligned_cols=83  Identities=25%  Similarity=0.323  Sum_probs=63.1

Q ss_pred             ceEEEEEeEEEEEccCCCCCcccccCCCCCCccccccceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCce
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G  156 (691)
                      |..++.++++..+..                    ...+++.++ .+.+||.++|+||||+|||||+++|+++. .++.|
T Consensus       137 p~~~~r~~v~~~l~T--------------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~-~pd~g  194 (450)
T PRK06002        137 PPAMTRARVETGLRT--------------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARAD-AFDTV  194 (450)
T ss_pred             CCCeEeecceEEcCC--------------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCC-CCCee
Confidence            445666677666652                    245888886 89999999999999999999999999966 46689


Q ss_pred             EEEECC---EeCCh--------hccccEEEEccCCC
Q 005545          157 KITYNG---RQFSS--------SLKRKTGFVTQDDV  181 (691)
Q Consensus       157 ~I~~~G---~~~~~--------~~~~~igyv~Q~~~  181 (691)
                      .|.+.|   +++..        ..++.+++|+|.+.
T Consensus       195 vv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~  230 (450)
T PRK06002        195 VIALVGERGREVREFLEDTLADNLKKAVAVVATSDE  230 (450)
T ss_pred             eeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence            988864   55431        12357999999764

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=98.35  E-value=1.2e-06  Score=107.07  Aligned_cols=78  Identities=27%  Similarity=0.375  Sum_probs=69.5

Q ss_pred             CCcccCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCchHHHhcC
Q 005545          234 LFRGISGGERKRVSIGQEML------VN--PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       234 ~~~~LSGGerqRv~IA~aL~------~~--P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      .+..|||||+=.++||.+|+      .+  -++|+|||||..||+.+...++++|..+...+++|++|||++  ++...+
T Consensus       812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~  889 (908)
T COG0419         812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA  889 (908)
T ss_pred             ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence            45779999999998888775      35  589999999999999999999999999998899999999994  567899


Q ss_pred             CEEEEecC
Q 005545          306 DKVVVLSE  313 (691)
Q Consensus       306 D~v~~L~~  313 (691)
                      |.++.+..
T Consensus       890 ~~~i~V~k  897 (908)
T COG0419         890 DVRIRVKK  897 (908)
T ss_pred             CeEEEEEe
Confidence            99998875

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.34  E-value=4.6e-07  Score=90.66  Aligned_cols=112  Identities=18%  Similarity=0.218  Sum_probs=65.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHH-hhcCCCCCCH
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAA-LLRLPKKLTR  206 (691)
Q Consensus       128 ~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~-~~~~~~~~~~  206 (691)
                      +++|.||||||||||.+.|++.+.   .|.               +.++.+|+.. ..++..+...... ....|...  
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~---~~~---------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~--   59 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG---NPK---------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAF--   59 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---CCC---------------eEEEEecccc-cccccccHHHhccCCCCCCCcc--
Confidence            579999999999999999999652   222               3344444332 2233333222111 11112111  


Q ss_pred             HHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 005545          207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS  270 (691)
Q Consensus       207 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~~~P~iLlLDEPtsgLD~  270 (691)
                        ..+...+.+..+...+..+.++     ...|.|++++..+   .+.+++++++|+|..+.++
T Consensus        60 --~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          60 --DFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             --cHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence              1223445566665443333322     2467777776555   5678999999999999886

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.32  E-value=1e-06  Score=106.41  Aligned_cols=137  Identities=23%  Similarity=0.239  Sum_probs=84.7

Q ss_pred             ceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccCCCCCCCCCHHHHHH
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS  193 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~  193 (691)
                      .+=+|+++. ..+.++.|.|||++||||+||.++-..--..-|                 .|||=+..   .+.+.+.+ 
T Consensus       596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G-----------------~~VPa~~a---~i~~~d~I-  653 (854)
T PRK05399        596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIG-----------------SFVPAESA---RIGIVDRI-  653 (854)
T ss_pred             eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcC-----------------Cceeccce---EecccCee-
Confidence            466788887 677899999999999999999987421000011                 13332211   01111111 


Q ss_pred             HHHhhcCCCCCCHHHHHHHHHHHHHHcCCCccccccccCCCCcccCHHHHHHHHHHHHHh--hCCCEEEEeCC---CCCC
Q 005545          194 YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEML--VNPSCLLLDEP---TSGL  268 (691)
Q Consensus       194 ~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~IA~aL~--~~P~iLlLDEP---tsgL  268 (691)
                                             ..++|-.   |.     ..+|.|-=+.....++..|-  ++++++|+|||   |+.+
T Consensus       654 -----------------------~triga~---d~-----i~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~  702 (854)
T PRK05399        654 -----------------------FTRIGAS---DD-----LASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTY  702 (854)
T ss_pred             -----------------------eeccCcc---cc-----cccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcc
Confidence                                   1111111   11     12356766666666666654  48999999999   8888


Q ss_pred             CHHHHHHHHHHHHHHHhC-CcEEEEEeCCCchHHHhcCCE
Q 005545          269 DSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       269 D~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~  307 (691)
                      |...  ....+++.+.+. |.++|++||..  ++.+++++
T Consensus       703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~  738 (854)
T PRK05399        703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK  738 (854)
T ss_pred             hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence            8443  455677777765 58999999993  56777775

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=98.32  E-value=1.6e-05  Score=95.95  Aligned_cols=49  Identities=24%  Similarity=0.228  Sum_probs=44.1

Q ss_pred             HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCCch
Q 005545          251 EMLVNPSCLLLDEPTSGLD-STTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       251 aL~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      .+..+|.++++|||...|| +..+..+.+.++.+++.|.+++++||++..
T Consensus       638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d  687 (800)
T PRK13898        638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED  687 (800)
T ss_pred             HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            3456899999999999999 889999999999999889999999999754

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.26  E-value=6e-07  Score=88.56  Aligned_cols=65  Identities=26%  Similarity=0.422  Sum_probs=45.4

Q ss_pred             CCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChh--cc-ccEEEEccCCCCCCCCCHHHHHHH
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS--LK-RKTGFVTQDDVLYPHLTVLETLSY  194 (691)
Q Consensus       125 ~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~--~~-~~igyv~Q~~~l~~~lTV~E~l~~  194 (691)
                      +||+++|+|+||||||||+++|+|++. +    +.++|.++...  .+ ...|+.+|+...++..++.+++.+
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~-~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~   69 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS-A----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY   69 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC-C----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence            699999999999999999999999763 2    57888776431  22 235666666544445555555443

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=98.21  E-value=1.9e-06  Score=108.86  Aligned_cols=59  Identities=29%  Similarity=0.432  Sum_probs=52.7

Q ss_pred             CcccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCC
Q 005545          235 FRGISGGERKRVS----IGQE--------MLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ  296 (691)
Q Consensus       235 ~~~LSGGerqRv~----IA~a--------L~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~  296 (691)
                      ..+||||||||++    +|++        +..+|++++||||++|||+.+...++++++++   |.++|+++|.
T Consensus      1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~ 1315 (1353)
T TIGR02680      1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSER 1315 (1353)
T ss_pred             ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccc
Confidence            4679999999996    5644        55899999999999999999999999999998   6889999987

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.14  E-value=4.5e-05  Score=79.97  Aligned_cols=37  Identities=35%  Similarity=0.498  Sum_probs=32.9

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcC
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~  149 (691)
                      ...|+++.+-+.+|+++.|.|++|+|||||+..++..
T Consensus        17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~   53 (271)
T cd01122          17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD   53 (271)
T ss_pred             cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            3468998889999999999999999999999988753

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK06315 type III secretion system ATPase; Provisional

Probab=98.13  E-value=5.9e-06  Score=92.07  Aligned_cols=109  Identities=19%  Similarity=0.240  Sum_probs=70.8

Q ss_pred             cceeeceEEEEeCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECC---EeCCh----hcc---ccEEEE-----c
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSS----SLK---RKTGFV-----T  177 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G---~~~~~----~~~---~~igyv-----~  177 (691)
                      .++++++ +.+.+||.++|+|+||+|||||+++|+|..+....|.|.+.|   +++.+    .++   .+.+++     +
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~  230 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD  230 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence            4689998 999999999999999999999999999966333347777745   44421    111   234555     8


Q ss_pred             cCCC--CCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 005545          178 QDDV--LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       178 Q~~~--l~~~lTV~E~l~~~~~~~~~~~~~~~~~~~~v~~~l~~lgL~  223 (691)
                      |++.  +.+.+ +...+.-..+.+-...+...+...++.+++++++|.
T Consensus       231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~  277 (442)
T PRK06315        231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA  277 (442)
T ss_pred             CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence            8764  44433 444443222222111123355667888899999884

>PRK13873 conjugal transfer ATPase TrbE; Provisional

Probab=98.13  E-value=7.4e-05  Score=90.45  Aligned_cols=47  Identities=26%  Similarity=0.247  Sum_probs=42.6

Q ss_pred             HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEEeCCCc
Q 005545          252 MLVNPSCLLLDEPTSGLD-STTAQRIVATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       252 L~~~P~iLlLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      +-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++.
T Consensus       632 ~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~  679 (811)
T PRK13873        632 FDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLA  679 (811)
T ss_pred             hcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH
Confidence            345899999999999999 78899999999999988999999999975

>COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.10  E-value=0.0013  Score=68.94  Aligned_cols=232  Identities=15%  Similarity=0.208  Sum_probs=134.5

Q ss_pred             HHHHHHHHHHHHHHHh-hcchhH-HHHH----HHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 005545          425 WWEQFKVLLKRGLQER-KHESYS-YLRI----FQVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFP--LNNAIF  496 (691)
Q Consensus       425 ~~~Q~~~L~~R~~~~~-r~~~~~-~~r~----~~~i~~all~G~lf~~~~~~~~~~r~g~lff~~~~~~~~~--~~~~i~  496 (691)
                      .++....|.+|+++.+ |+..+- .--+    ++.++++++.|.++-.-    .-+....++.-...|.|++  ...+..
T Consensus        16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~----~~~~~~~l~~G~~~w~f~~~~i~~~~~   91 (263)
T COG1682          16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSP----GLNFLAYLLAGLILWFFFSEAISEGAG   91 (263)
T ss_pred             HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCC----CcchHHHHHHHHHHHHHHHHHHHhHHH
Confidence            4566778889999874 554431 1233    34444445555444332    2222222222223333322  223344


Q ss_pred             HHHHhhHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 005545          497 VFPQERAMLIKERSSGMYRLSSYYFARMVGDLPMELVLPTIFITVAYWMGGLKPSLITFLLTLSIILFNVLVAQSLGLLL  576 (691)
Q Consensus       497 ~f~~eR~v~~rE~~~g~Y~~~ay~la~~l~~lP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~~~~~l~~~~~~slg~~i  576 (691)
                      .+.+...++.|-+    .++..+.+++++.++-...+..++....+-|..+..  ...++.....+.+..+.+.++|+++
T Consensus        92 s~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~--s~~~l~~~~~l~~l~l~~~g~~l~~  165 (263)
T COG1682          92 SVVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP--SWHWLLLLPALLLLILFSVGLGLIL  165 (263)
T ss_pred             HhhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666655432    378899999999998777777766665555554444  3344444455566667777788887


Q ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcccccccccc
Q 005545          577 GAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLHCSVMEFPA  654 (691)
Q Consensus       577 ~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~c~~~~~~~  654 (691)
                      |.++.-..--..+-+.++-+++..+|.+=+  ++|+-++|+.++||+.+-.|.+=..-+++. .              + 
T Consensus       166 a~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~~-~--------------~-  229 (263)
T COG1682         166 ASLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGGD-V--------------P-  229 (263)
T ss_pred             HhHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCCC-c--------------c-
Confidence            777543332233444555555556665443  999999999999999999998755555432 1              0 


Q ss_pred             ceecCCCchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 005545          655 IKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMRQP  690 (691)
Q Consensus       655 ~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~~~  690 (691)
                              .+.+.+..++..++..+++++..++.||
T Consensus       230 --------~~~~~~~~~~~~li~l~vg~~~~~~~~~  257 (263)
T COG1682         230 --------DLHLLVYILLLTLILLFVGLLLFRKFRK  257 (263)
T ss_pred             --------cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                    1233344445555566666666666554

>TIGR00416 sms DNA repair protein RadA

Probab=98.09  E-value=9.3e-06  Score=91.56  Aligned_cols=62  Identities=21%  Similarity=0.268  Sum_probs=43.8

Q ss_pred             hCCCEEEEeCCCCCC----C-----HHHHHHHHHHHHHHHh-CCcEEEEEeCCCch-------HHHhcCCEEEEecCCe
Q 005545          254 VNPSCLLLDEPTSGL----D-----STTAQRIVATLRGLAR-GGRTVITTIHQPSS-------RLYRMFDKVVVLSEGS  315 (691)
Q Consensus       254 ~~P~iLlLDEPtsgL----D-----~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~-------~i~~~~D~v~~L~~G~  315 (691)
                      .+|+++++|.-++=.    +     .....+++..|.++++ .|.|+++++|...+       .+..++|.|+.|+.++
T Consensus       169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~  247 (454)
T TIGR00416       169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR  247 (454)
T ss_pred             cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence            478999999876521    1     2234556667777765 59999999997432       1567899999998654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.08  E-value=1.6e-05  Score=73.39  Aligned_cols=55  Identities=20%  Similarity=0.235  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEEeCCCc
Q 005545          243 RKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-----GGRTVITTIHQPS  298 (691)
Q Consensus       243 rqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~~~H~p~  298 (691)
                      ++..........++.++++||.-.. ++.....+.+.+..+..     .+..+|++++...
T Consensus        72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~  131 (151)
T cd00009          72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL  131 (151)
T ss_pred             hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence            3344445566778999999998775 66677788888888753     4678899988643

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=98.07  E-value=0.0019  Score=67.39  Aligned_cols=165  Identities=18%  Similarity=0.264  Sum_probs=95.3

Q ss_pred             hHHHHHHhhCCC--------CChHHHHHHHHHHHHHHHHH--HHHHHh--h-hhhcc-cCccccHHHHHHHHHHHHHHHH
Q 005545          502 RAMLIKERSSGM--------YRLSSYYFARMVGDLPMELV--LPTIFI--T-VAYWM-GGLKPSLITFLLTLSIILFNVL  567 (691)
Q Consensus       502 R~v~~rE~~~g~--------Y~~~ay~la~~l~~lP~~~~--~~~if~--~-i~Y~m-~Gl~~~~~~F~~f~~~~~l~~~  567 (691)
                      -..+-+|+++|.        ++...++++|.++-+...++  ......  + ..++. .|.+.+...++...+...+..+
T Consensus        87 ~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (277)
T PF12679_consen   87 SDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL  166 (277)
T ss_pred             HHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            445666766663        57789999999999877432  111111  1 12222 3445555555544444333333


Q ss_pred             ---HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcccc--CCcchhh-----hhhhhCHHHHHHHHHHHHHhCCCc
Q 005545          568 ---VAQSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYYIQ--HMSPFIA-----WLKYISFSHYCYKLLVGVQYSANE  637 (691)
Q Consensus       568 ---~~~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~--~ip~~~~-----Wl~yiSp~~Y~~~~l~~nef~~~~  637 (691)
                         +..+++.++|+++++...|..++..+.............  .-..+..     .+.+++|..+ ++.+......+. 
T Consensus       167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~-  244 (277)
T PF12679_consen  167 AVLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGG-  244 (277)
T ss_pred             HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhccc-
Confidence               458999999999999998888777655555433333221  1112222     3356666542 222222222211 


Q ss_pred             eeccCCCccccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 005545          638 VYACGSGLHCSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRMR  688 (691)
Q Consensus       638 ~~~C~~~~~c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~~  688 (691)
                       ..               .    ...|.++++++++.+++.+++|...++.
T Consensus       245 -~~---------------~----~~~~~~~~~~~~~~~v~l~la~~~F~rr  275 (277)
T PF12679_consen  245 -FV---------------W----LSTWPSLLILLAYTLVFLALAYYRFQRR  275 (277)
T ss_pred             -cc---------------h----hHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             00               0    3568889999999999999999766553

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.05  E-value=5.1e-06  Score=67.36  Aligned_cols=36  Identities=39%  Similarity=0.655  Sum_probs=29.5

Q ss_pred             eeceEEEEeC-CeEEEEEcCCCCcHHHHHHHHHcCCC
Q 005545          116 LNGVSGMVKP-GELLAMLGPSGSGKTTLLTALAGRLR  151 (691)
Q Consensus       116 L~~vs~~i~~-Ge~~aliGpsGsGKSTLL~~L~G~~~  151 (691)
                      +++.++.+.+ |+++.|.|+|||||||||+++.=.+.
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            4556677775 57999999999999999999986554

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.05  E-value=5.6e-06  Score=85.00  Aligned_cols=73  Identities=18%  Similarity=0.291  Sum_probs=49.4

Q ss_pred             eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceE----EEECCEeCChhccccEEEEccCCCCCCCCCHHHHHHHHHhh
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK----ITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL  198 (691)
Q Consensus       124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~----I~~~G~~~~~~~~~~igyv~Q~~~l~~~lTV~E~l~~~~~~  198 (691)
                      .+..+++|.||||||||||.+.|++++. +.+|.    |.+++.......++..|++.+.+ ..+.+++.+.+.+...+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~-~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l  107 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ-QDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRL  107 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh-hccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHH
Confidence            4578999999999999999999999874 45777    55555433333344567776543 33456776665554433

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=98.02  E-value=0.0042  Score=64.39  Aligned_cols=153  Identities=14%  Similarity=0.144  Sum_probs=93.9

Q ss_pred             HHHHHHhhCCCC--------ChHHHHHHHHHHHHHHHHHHHH---HHhhhhhcccC--ccccHHHHHHHHHHHHHHHHHH
Q 005545          503 AMLIKERSSGMY--------RLSSYYFARMVGDLPMELVLPT---IFITVAYWMGG--LKPSLITFLLTLSIILFNVLVA  569 (691)
Q Consensus       503 ~v~~rE~~~g~Y--------~~~ay~la~~l~~lP~~~~~~~---if~~i~Y~m~G--l~~~~~~F~~f~~~~~l~~~~~  569 (691)
                      ..+.+||++|..        +...++++|.++-+-+..+..+   ++....++...  -..+...++..++..++...+.
T Consensus        71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  150 (240)
T TIGR03518        71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY  150 (240)
T ss_pred             HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence            455666666654        4578999999988755443222   12222222211  1234556655555566677788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhhcc-ccCC--cchhhhhhhhCHHHHHHHHHHHHHhCCCceeccCCCcc
Q 005545          570 QSLGLLLGAIIMDVKQATALASVTMLVFLMAGGYY-IQHM--SPFIAWLKYISFSHYCYKLLVGVQYSANEVYACGSGLH  646 (691)
Q Consensus       570 ~slg~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~-i~~i--p~~~~Wl~yiSp~~Y~~~~l~~nef~~~~~~~C~~~~~  646 (691)
                      .++|.++|+++.+...|..++..+...  ++.|+. +.++  |++.+|+.|+||..|-.+..     ++  .+       
T Consensus       151 ~aig~~iSsl~~~q~~a~~~~~~~~~~--l~~~~~~l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g--~i-------  214 (240)
T TIGR03518       151 TAIGLFASSLTENQIVAFIIAVFLCFL--FYFGFDGLASLLWGGSAYTISELGLSYHYESIS-----RG--VI-------  214 (240)
T ss_pred             HHHHHHHHHHhchHHHHHHHHHHHHHH--HHHHHHHHhhhcchhHHHHHHHcCHHHHHHHHH-----cC--cc-------
Confidence            899999999999998887655433222  223321 3344  88899999999976643322     11  11       


Q ss_pred             ccccccccceecCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 005545          647 CSVMEFPAIKYLGVDNKLIDVAALTMMLVGYRLLAYVTLRM  687 (691)
Q Consensus       647 c~~~~~~~~~~~g~~~~w~~~~iL~~~~~~~~~l~~l~L~~  687 (691)
                                      .+.|+.+.+.+.+.+..++...+++
T Consensus       215 ----------------~~~~~v~~~~~~~~~l~l~~~~~~~  239 (240)
T TIGR03518       215 ----------------DSRDVIYFLSITVLFLALTKLQLKS  239 (240)
T ss_pred             ----------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence                            1466777777777777777766643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>TIGR00152 dephospho-CoA kinase

Probab=98.01  E-value=5.1e-06  Score=82.53  Aligned_cols=73  Identities=18%  Similarity=0.230  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEeCCCch-HHHhcCCEEEEecCC
Q 005545          240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS-RLYRMFDKVVVLSEG  314 (691)
Q Consensus       240 GGerqRv~IA~aL~~~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~-~i~~~~D~v~~L~~G  314 (691)
                      .|+-+|..||..+..+|+.+..+|  +.+||.....+.+.++++.++|.+||+.+|.... .+...||.+++++.+
T Consensus        60 ~g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~  133 (188)
T TIGR00152        60 DGELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS  133 (188)
T ss_pred             CCCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence            478899999999999999988777  8999999999999999887667899999998632 256789999888654

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>TIGR00235 udk uridine kinase

Probab=98.01  E-value=2.5e-06  Score=86.17  Aligned_cols=27  Identities=37%  Similarity=0.532  Sum_probs=25.5

Q ss_pred             eCCeEEEEEcCCCCcHHHHHHHHHcCC
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~  150 (691)
                      ++|++++|+||||||||||++.|++++
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l   30 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQL   30 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHh
Confidence            579999999999999999999999976

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.99  E-value=6.8e-06  Score=81.56  Aligned_cols=37  Identities=41%  Similarity=0.682  Sum_probs=30.9

Q ss_pred             CeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCC
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS  166 (691)
Q Consensus       126 Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~  166 (691)
                      |++++|+||||||||||+++|++... +   .+.+++..+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~-~---~~~~~~~~~~   38 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ-T---QLLVAHRYIT   38 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC-C---eEEEcCEECC
Confidence            78999999999999999999999652 2   5777776654

>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A

Probab=97.98  E-value=1.6e-05  Score=69.69  Aligned_cols=47  Identities=32%  Similarity=0.461  Sum_probs=36.8

Q ss_pred             cccCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 005545          236 RGISGGER-KRVSIGQEML------V------NPSCLLLDEPTSGLDSTTAQRIVATLRG  282 (691)
Q Consensus       236 ~~LSGGer-qRv~IA~aL~------~------~P~iLlLDEPtsgLD~~~~~~i~~~L~~  282 (691)
                      .++||||| ..+.++.+++      .      .|.+++||||+++||+.....++++|++
T Consensus        31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~   90 (90)
T PF13558_consen   31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ   90 (90)
T ss_dssp             GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred             CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence            46999999 5555544432      2      3689999999999999999999999875

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.97  E-value=4.7e-06  Score=83.57  Aligned_cols=56  Identities=30%  Similarity=0.367  Sum_probs=42.7

Q ss_pred             eCCeEEEEEcCCCCcHHHHHHHHHcCCCCCCceEEEECCEeCChhccccEEEEccC
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQD  179 (691)
Q Consensus       124 ~~Ge~~aliGpsGsGKSTLL~~L~G~~~~~~~G~I~~~G~~~~~~~~~~igyv~Q~  179 (691)
                      .+|++++|+|+||||||||.+.|++++...-.|.+.++|.++...+...++|.+|+
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~   77 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDAD   77 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCccc
Confidence            68999999999999999999999997643335789999977654333345555554

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=97.96  E-value=8.2e-05  Score=73.54  Aligned_cols=46  Identities=15%  Similarity=0.183  Sum_probs=35.7

Q ss_pred             ccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhC
Q 005545          237 GISGGERKRVS--IGQEMLV-NPSCLLLDEPTSGLDSTTAQRIVATLRGLARG  286 (691)
Q Consensus       237 ~LSGGerqRv~--IA~aL~~-~P~iLlLDEPtsgLD~~~~~~i~~~L~~l~~~  286 (691)
                      .+|+||+|++.  +++.+-. ++++    .|+|++|.....++.+.|.++.++
T Consensus       147 l~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        147 KLKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             cCCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHhcC
Confidence            47999999987  5544433 3444    399999999999999999988764

>TIGR00767 rho transcription termination factor Rho

Probab=97.94  E-value=1.8e-05  Score=86.64  Aligned_cols=52  Identities=21%  Similarity=0.273  Sum_probs=45.3

Q ss_pred             EEEEEeEEEEEccCCCCCcccccCCCCCCccccccceee-----------ceEEEEeCCeEEEEEcCCCCcHHHHHHHHH
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLN-----------GVSGMVKPGELLAMLGPSGSGKTTLLTALA  147 (691)
Q Consensus        79 ~l~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~-----------~vs~~i~~Ge~~aliGpsGsGKSTLL~~L~  147 (691)
                      .+.|+||++.|+..                    +.+|+           |+++.|.+|+.++|+||+|+|||||++.|+
T Consensus       130 ri~Fe~LTf~YP~e--------------------r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~  189 (415)
T TIGR00767       130 RVLFENLTPLYPNE--------------------RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIA  189 (415)
T ss_pred             CeEEEEeeecCCCc--------------------cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHH
Confidence            58999999999732                    23454           999999999999999999999999999999


Q ss_pred             cCC
Q 005545          148 GRL  150 (691)
Q Consensus       148 G~~  150 (691)
                      ..+
T Consensus       190 ~~I  192 (415)
T TIGR00767       190 QAI  192 (415)
T ss_pred             Hhh
Confidence            855

Members of this family differ in the specificity of RNA binding.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	691
2it1_A	362	Structure Of Ph0203 Protein From Pyrococcus Horikos		4e-15
1q12_A	381	Crystal Structure Of The Atp-bound E. Coli Malk Len		1e-13
1q1b_A	381	Crystal Structure Of E. Coli Malk In The Nucleotide		1e-13
1g29_1	372	Malk Length = 372		2e-13
2r6g_A	381	The Crystal Structure Of The E. Coli Maltose Transp		3e-13
2pcj_A	224	Crystal Structure Of Abc Transporter (Aq_297) From		4e-13
1oxs_C	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		2e-12
3d31_A	348	Modbc From Methanosarcina Acetivorans Length = 348		3e-12
3b5j_A	243	Crystal Structures Of The S504a Mutant Of An Isolat		3e-12
2pmk_A	243	Crystal Structures Of An Isolated Abc-Atpase In Com		4e-12
1mt0_A	241	Atp-Binding Domain Of Haemolysin B From Escherichia		4e-12
2ff7_A	247	The Abc-Atpase Of The Abc-Transporter Hlyb In The A		4e-12
2yyz_A	359	Crystal Structure Of Sugar Abc Transporter, Atp-Bin		5e-12
3c41_J	242	Abc Protein Artp In Complex With Amp-PnpMG2+ Length		7e-12
1oxx_K	353	Crystal Structure Of Glcv, The Abc-Atpase Of The Gl		9e-12
2olj_A	263	Abc Protein Artp In Complex With AdpMG2+ Length = 2		1e-11
2ffb_A	247	The Crystal Structure Of The Hlyb-Nbd E631q Mutant		1e-11
2d62_A	375	Crystal Structure Of Multiple Sugar Binding Transpo		5e-11
1xef_A	241	Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI		7e-11
2ffa_A	247	Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr		7e-11
2hyd_A	578	Multidrug Abc Transporter Sav1866 Length = 578		1e-10
4f4c_A	1321	The Crystal Structure Of The Multi-Drug Transporter		2e-10
1vci_A	373	Crystal Structure Of The Atp-binding Cassette Of Mu		4e-10
1v43_A	372	Crystal Structure Of Atpase Subunit Of Abc Sugar Tr		5e-10
3b5x_A	582	Crystal Structure Of Msba From Vibrio Cholerae Leng		6e-10
3dhw_C	343	Crystal Structure Of Methionine Importer Metni Leng		1e-09
4ayt_A	595	Structure Of The Human Mitochondrial Abc Transporte		1e-09
3nh6_A	306	Nucleotide Binding Domain Of Human Abcb6 (Apo Struc		2e-09
4ayw_A	619	Structure Of The Human Mitochondrial Abc Transporte		2e-09
3qf4_A	587	Crystal Structure Of A Heterodimeric Abc Transporte		2e-09
3tui_C	366	Inward Facing Conformations Of The Metni Methionine		2e-09
3tuj_C	366	Inward Facing Conformations Of The Metni Methionine		2e-09
3g60_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-09
3g5u_A	1284	Structure Of P-Glycoprotein Reveals A Molecular Bas		3e-09
1l2t_A	235	Dimeric Structure Of Mj0796, A Bacterial Abc Transp		5e-09
1mv5_A	243	Crystal Structure Of Lmra Atp-Binding Domain Length		7e-09
3tif_A	235	Dimeric Structure Of A Post-Hydrolysis State Of The		9e-09
1z47_A	355	Structure Of The Atpase Subunit Cysa Of The Putativ		9e-09
1b0u_A	262	Atp-Binding Subunit Of The Histidine Permease From		1e-08
2onk_A	240	Abc Transporter Modbc In Complex With Its Binding P		1e-08
1f3o_A	235	Crystal Structure Of Mj0796 Atp-Binding Cassette Le		2e-08
3qf4_B	598	Crystal Structure Of A Heterodimeric Abc Transporte		3e-08
3b5w_A	582	Crystal Structure Of Eschericia Coli Msba Length =		3e-08
4hlu_A	268	Structure Of The Ecfa-a' Heterodimer Bound To Adp L		4e-08
2yz2_A	266	Crystal Structure Of The Abc Transporter In The Cob		5e-08
3b5y_A	582	Crystal Structure Of Msba From Salmonella Typhimuri		1e-07
3fvq_A	359	Crystal Structure Of The Nucleotide Binding Domain		1e-07
2ghi_A	260	Crystal Structure Of Plasmodium Yoelii Multidrug Re		3e-07
2ixf_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		5e-07
3gfo_A	275	Structure Of Cbio1 From Clostridium Perfringens: Pa		5e-07
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		5e-06
1vpl_A	256	Crystal Structure Of Abc Transporter Atp-binding Pr		7e-06
2ixe_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		8e-06
2d2e_A	250	Crystal Structure Of Atypical Cytoplasmic Abc-Atpas		2e-05
2d3w_A	248	Crystal Structure Of Escherichia Coli Sufc, An Atpa		4e-05
2zu0_C	267	Crystal Structure Of Sufc-Sufd Complex Involved In		4e-05
2nq2_C	253	An Inward-Facing Conformation Of A Putative Metal-C		5e-05
1g6h_A	257	Crystal Structure Of The Adp Conformation Of Mj1267		8e-05
1g9x_A	257	Characterization Of The Twinning Structure Of Mj126		8e-05
1gaj_A	257	Crystal Structure Of A Nucleotide-Free Atp-Binding		2e-04
2ixg_A	271	Crystal Structure Of The Atpase Domain Of Tap1 With		2e-04
4g1u_C	266	X-Ray Structure Of The Bacterial Heme Transporter H		2e-04

>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362

Iteration: 1
 Score = 80.1 bits (196), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 112/239 (46%), Gaps = 15/239 (6%)
Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS 167
           K+    + LN ++  +K GE +A+LGP                    SGKI ++ +  + 
Sbjct: 11  KKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT-SGKIYFDEKDVTE 69
Query: 168 --SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
                R  G V Q+  LYPH+TV + +++   LR   K  REE  ++   V   L + + 
Sbjct: 70  LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKL 126
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
            N     P    +SGG+++RV+I + ++  P  LLLDEP S LD+     + A L+ L +
Sbjct: 127 LNRY---PW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQK 181
Query: 286 G-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNP 343
             G T +   H  +  L  M D++ V+ EG  +  G   +V  Y     +V GF L NP
Sbjct: 182 ELGITTVYVTHDQAEAL-AMADRIAVIREGEILQVGTPDEVY-YKPKYKFVGGF-LGNP 237

>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           +R  G V Q   LYPHL+V E +S+   L   KK    +++ Q   V ++L     R   
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKP- 131
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST-TAQRIVATLRGLARGGR 288
                 + +SGG+R+RV+IG+ ++  PS  LLDEP S LD+    Q  +   R   R GR
Sbjct: 132 ------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
           T+I   H     +  + DK+VVL  G     G+  ++  Y     +V GF
Sbjct: 186 TMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPAD-RFVAGF 233

>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 56/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           +R  G V Q   LYPHL+V E +S+   L   KK    +++ Q   V ++L     R   
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKP- 131
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST-TAQRIVATLRGLARGGR 288
                 + +SGG+R+RV+IG+ ++  PS  LLDEP S LD+    Q  +   R   R GR
Sbjct: 132 ------KALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
           T+I   H     +  + DK+VVL  G     G+  ++  Y     +V GF
Sbjct: 186 TMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPAD-RFVAGF 233

>pdb|1G29|1 Chain 1, Malk Length = 372

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 11/184 (5%)
Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
           F     R    V Q   LYPH+TV + +++   LR   K+ R+E  ++   V   LGLT 
Sbjct: 75  FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131
Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             N     P  R +SGG+R+RV++G+ ++  P   L+DEP S LD+    R+ A L+ L 
Sbjct: 132 LLNR---KP--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186
Query: 285 RG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNP 343
           R  G T I   H     +  M D++ V++ G     G   +V D   +  +V GF    P
Sbjct: 187 RQLGVTTIYVTHDQVEAMT-MGDRIAVMNRGVLQQVGSPDEVYDKPANT-FVAGFIGSPP 244
Query: 344 ADFL 347
            +FL
Sbjct: 245 MNFL 248

>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/170 (32%), Positives = 83/170 (48%), Gaps = 11/170 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           +R  G V Q   LYPHL+V E +S+   L   KK    +++ Q   V ++L     R   
Sbjct: 74  ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKP- 131
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDST-TAQRIVATLRGLARGGR 288
                 + +SGG+R+RV+IG+ ++  PS  LLD+P S LD+    Q  +   R   R GR
Sbjct: 132 ------KALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGR 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
           T+I   H     +  + DK+VVL  G     G+  ++  Y     +V GF
Sbjct: 186 TMIYVTHDQVEAMT-LADKIVVLDAGRVAQVGKPLELYHYPAD-RFVAGF 233

>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224

Iteration: 1
 Score = 73.6 bits (179), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 58/200 (29%), Positives = 90/200 (45%), Gaps = 23/200 (11%)
Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQ--- 164
           K  R   +L G+S  VK GE ++++G                      GK+   G++   
Sbjct: 12  KVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT-EGKVFLEGKEVDY 70
Query: 165 -----FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
                 S    RK GFV Q   L P LT LE +    +L++ K   ++E  E+ E ++ E
Sbjct: 71  TNEKELSLLRNRKLGFVFQFHYLIPELTALENV-IVPMLKMGKP--KKEAKERGEYLLSE 127
Query: 220 LGLTRCRNSVVGGPLFRG---ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI 276
           LGL        G  L R    +SGGE++RV+I + +   P  L  DEPT  LDS   +R+
Sbjct: 128 LGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRV 179
Query: 277 VATLRGLARGGRTVITTIHQ 296
           +     +  GG +++   H+
Sbjct: 180 MDIFLKINEGGTSIVMVTHE 199

>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/223 (27%), Positives = 110/223 (49%), Gaps = 18/223 (8%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLK-- 170
           V  L+ V+  ++ GE   +LGP                    +G++ ++ R  +S+ K  
Sbjct: 18  VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLI 76
Query: 171 -----RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
                RK G V Q   LYP+LT  E +++  L  +  K+++EE  ++ E V   L +   
Sbjct: 77  VPPEDRKIGMVFQTWALYPNLTAFENIAFP-LTNM--KMSKEEIRKRVEEVAKILDIHHV 133
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-A 284
            N        R +SGG+++RV++ + ++ +PS LLLDEP S LD+       A ++ + +
Sbjct: 134 LNH-----FPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           R G T++   H P+  ++ + D+V VL +G  +  G+   + D
Sbjct: 189 RLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYD 230

>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 102/228 (44%), Gaps = 16/228 (7%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS--SSLKRKT 173
           L+ +S  V+ GE   +LGP                    SG+I  +G+  +  S  K   
Sbjct: 16  LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD-SGRILLDGKDVTDLSPEKHDI 74
Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
            FV Q+  L+PH+ V + L +   +R+ K    +  ++ A  + +E  L R        P
Sbjct: 75  AFVYQNYSLFPHMNVKKNLEFG--MRMKKIKDPKRVLDTARDLKIEHLLDR-------NP 125
Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITT 293
           L   +SGGE++RV++ + ++ NP  LLLDEP S LD  T +     L  L +  +  +  
Sbjct: 126 L--TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLH 183
Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD--YFGSIGYVPGFN 339
           I    +    M D++ V+ +G  I  G+  ++ +    G +    GF 
Sbjct: 184 ITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFE 231

>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
           +L+ ++  +K GE++ ++G                     +G++  +G   + +    L+
Sbjct: 20  ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 78
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL      N++V
Sbjct: 79  RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 135
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  + + GRTV
Sbjct: 136 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 193
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           I   H+ S+   +  D+++V+ +G  +  G+  +++
Sbjct: 194 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 227

>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243

Iteration: 1
 Score = 70.1 bits (170), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
           +L+ ++  +K GE++ ++G                     +G++  +G   + +    L+
Sbjct: 20  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 78
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL      N++V
Sbjct: 79  RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 135
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  + + GRTV
Sbjct: 136 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 193
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           I   H+ S+   +  D+++V+ +G  +  G+  +++
Sbjct: 194 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 227

>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
           +L+ ++  +K GE++ ++G                     +G++  +G   + +    L+
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 76
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL      N++V
Sbjct: 77  RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 133
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  + + GRTV
Sbjct: 134 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           I   H+ S+   +  D+++V+ +G  +  G+  +++
Sbjct: 192 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 225

>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/216 (25%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
           +L+ ++  +K GE++ ++G                     +G++  +G   + +    L+
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 82
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL      N++V
Sbjct: 83  RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  + + GRTV
Sbjct: 140 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           I   H+ S+   +  D+++V+ +G  +  G+  +++
Sbjct: 198 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 231

>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 119/257 (46%), Gaps = 19/257 (7%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS--SLK 170
           V  ++GVS  VK GE +A+LGP                    SG+I ++    +      
Sbjct: 16  VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT-SGEIYFDDVLVNDIPPKY 74
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-EQAEMVIMELGLTRCRNSV 229
           R+ G V Q+  LYPH+TV E +++    R   K   E+++ E A  ++++  L R     
Sbjct: 75  REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ- 133
Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GR 288
                   +SGG+++RV++ + ++  P  LL DEP S LD+     + A ++ L +  G 
Sbjct: 134 --------LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLL 348
           T +   H  +  +  M  ++ V ++G  +  G   +V D   ++ +V  F    P +FL 
Sbjct: 186 TSVYVTHDQAEAMT-MASRIAVFNQGKLVQYGTPDEVYDSPKNM-FVASFIGNPPTNFLR 243
Query: 349 DLANGIAPD---VKQDD 362
           D +  +      +K+DD
Sbjct: 244 DFSVSVENKQTILKRDD 260

>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 15/222 (6%)
Query: 112 TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS--- 168
           ++ VL G++  ++ GE++ ++GP                     G+I  +G    +    
Sbjct: 15  SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTN 73
Query: 169 ---LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
              ++ + G V Q   L+PH+TVL  ++ A +    +K  RE+   +A  ++ ++GL   
Sbjct: 74  LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGL--- 128
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
           ++     P    +SGG+ +RV+I + + + P  +L DEPTS LD      +++ ++ LA 
Sbjct: 129 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 186
Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            G T++   H+       + D+V+ +  G  I  G+   + D
Sbjct: 187 EGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227

>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353

Iteration: 1
 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 109/223 (48%), Gaps = 18/223 (8%)
Query: 113 VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSSLK-- 170
           V  L+ V+  ++ GE   +LGP                    +G++ ++ R  +S+ K  
Sbjct: 18  VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS-TGELYFDDRLVASNGKLI 76
Query: 171 -----RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
                RK G V Q   LYP+LT  E +++  L  +  K+++EE  ++ E V   L +   
Sbjct: 77  VPPEDRKIGMVFQTWALYPNLTAFENIAFP-LTNM--KMSKEEIRKRVEEVAKILDIHHV 133
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-A 284
            N        R +SG +++RV++ + ++ +PS LLLDEP S LD+       A ++ + +
Sbjct: 134 LNH-----FPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS 188
Query: 285 RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           R G T++   H P+  ++ + D+V VL +G  +  G+   + D
Sbjct: 189 RLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYD 230

>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/222 (23%), Positives = 105/222 (47%), Gaps = 15/222 (6%)
Query: 112 TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS--- 168
           ++ VL G++  ++ GE++ ++GP                     G+I  +G    +    
Sbjct: 36  SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD-EGEIIIDGINLKAKDTN 94
Query: 169 ---LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
              ++ + G V Q   L+PH+TVL  ++ A +    +K  RE+   +A  ++ ++GL   
Sbjct: 95  LNKVREEVGMVFQRFNLFPHMTVLNNITLAPMK--VRKWPREKAEAKAMELLDKVGL--- 149
Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
           ++     P    +SGG+ +RV+I + + + P  +L DEPTS LD      +++ ++ LA 
Sbjct: 150 KDKAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN 207
Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            G T++   H+       + D+V+ +  G  I  G+   + D
Sbjct: 208 EGMTMVVVTHE-MGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248

>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 110/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
           +L+ ++  +K GE++ ++G                     +G++  +G   + +    L+
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 82
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL      N++V
Sbjct: 83  RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+SGG+R+R++I + ++ NP  L+ D+ TS LD  +   I+  +  + + GRTV
Sbjct: 140 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           I   H+ S+   +  D+++V+ +G  +  G+  +++
Sbjct: 198 IIIAHRLST--VKNADRIIVMEKGKIVEQGKHKELL 231

>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 57/185 (30%), Positives = 87/185 (47%), Gaps = 13/185 (7%)
Query: 165 FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
           F    +R    V Q   LYPH TV + +++   LR   K+ ++E  ++   V   LGLT 
Sbjct: 78  FVPPKERDVAXVFQSYALYPHXTVYDNIAFPLKLR---KVPKQEIDKRVREVAEXLGLTE 134
Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             N     P  R +SGG+R+RV++G+ ++  P   L DEP S LD+    +  A L+ L 
Sbjct: 135 LLNR---KP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQ 189
Query: 285 RG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIG-YVPGFNLLN 342
           R  G T I   H          D++ V ++G     G   +V  Y+  +  +V GF    
Sbjct: 190 RQLGVTTIYVTHD-QVEAXTXGDRIAVXNKGELQQVGTPDEV--YYKPVNTFVAGFIGSP 246
Query: 343 PADFL 347
           P +FL
Sbjct: 247 PXNFL 251

>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
           +L+ ++  +K GE++ ++G                     +G++  +G   + +    L+
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 76
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL      N++V
Sbjct: 77  RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 133
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  + + GRTV
Sbjct: 134 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           I    + S+   +  D+++V+ +G  +  G+  +++
Sbjct: 192 IIIAARLST--VKNADRIIVMEKGKIVEQGKHKELL 225

>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247

Iteration: 1
 Score = 65.9 bits (159), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS----LK 170
           +L+ ++  +K GE++ ++G                     +G++  +G   + +    L+
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 82
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL      N++V
Sbjct: 83  RQVGVVLQDNVLL-NRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL--REGYNTIV 139
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           G     G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  + + GRTV
Sbjct: 140 G-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 197
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
           I    + S+   +  D+++V+ +G  +  G+  +++
Sbjct: 198 IIIAARLST--VKNADRIIVMEKGKIVEQGKHKELL 231

>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/175 (32%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 155 SGKITYNGRQ----FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI 210
           SG+I  +G       + SL+ + G V QD++L+      +T+    LL  P   T EE +
Sbjct: 395 SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-----DTVKENILLGRPTA-TDEEVV 448
Query: 211 EQAEMVIME---LGLTRCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPT 265
           E A+M       + L +  ++ VG    RG+  SGG+++R+SI +  L NP  L+LDE T
Sbjct: 449 EAAKMANAHDFIMNLPQGYDTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEAT 505
Query: 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           S LD  +   I   L  L++  RT +   H+ S+  +   DK+VV+  G  + +G
Sbjct: 506 SALDLESESIIQEALDVLSK-DRTTLIVAHRLSTITHA--DKIVVIENGHIVETG 557

>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/230 (27%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 113  VSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS----S 168
            + +L G+S  V+PG+ LA++GP                     G+I  +G +  +     
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT-LGGEIFIDGSEIKTLNPEH 1150
Query: 169  LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMELGLT 223
             + +   V+Q+  L+   ++ E + Y      P  +T  +  E A +      I EL   
Sbjct: 1151 TRSQIAIVSQEPTLF-DCSIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIAEL--P 1204
Query: 224  RCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
                + VG    RG  +SGG+++R++I + ++ NP  LLLDE TS LD T ++++V    
Sbjct: 1205 EGFETRVGD---RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEAL 1260
Query: 282  GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS 331
              AR GRT I   H+ ++ +    D + V+S G+ I  G   Q+M   G+
Sbjct: 1261 DRAREGRTCIVIAHRLNTVMNA--DCIAVVSNGTIIEKGTHTQLMSEKGA 1308

>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 13/215 (6%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS--SSLKR 171
           + +N ++  +K GE L +LGP                     G+I +  R  +      R
Sbjct: 26  TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPPKDR 84
Query: 172 KTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
               V Q   ++PH+TV E +++   + + PK    +     AE++ +E  L R      
Sbjct: 85  NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-- 142
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
                  +SGG+R+RV++ + ++V P  LL+DEP S LD+     + A ++ L +  +  
Sbjct: 143 -------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 195
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
              +         M D++ V++ G  +  G   +V
Sbjct: 196 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 230

>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372

Iteration: 1
 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 93/215 (43%), Gaps = 13/215 (6%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS--SSLKR 171
           + +N ++  +K GE L +LGP                     G+I +  R  +      R
Sbjct: 25  TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT-EGRIYFGDRDVTYLPPKDR 83
Query: 172 KTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
               V Q   ++PH+TV E +++   + + PK    +     AE++ +E  L R      
Sbjct: 84  NISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ-- 141
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
                  +SGG+R+RV++ + ++V P  LL+DEP S LD+     + A ++ L +  +  
Sbjct: 142 -------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVT 194
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
              +         M D++ V++ G  +  G   +V
Sbjct: 195 TIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEV 229

>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582

Iteration: 1
 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 100/185 (54%), Gaps = 18/185 (9%)
Query: 155 SGKITYNG---RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI 210
           SG I  +G   R +  ++L+R    V+Q+  L+   T+   ++YAA      + TRE+ I
Sbjct: 397 SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAA----EGEYTREQ-I 450
Query: 211 EQA--EMVIMEL--GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
           EQA  +   ME    + +  ++V+G      +SGG+R+RV+I + +L +   L+LDE TS
Sbjct: 451 EQAARQAHAMEFIENMPQGLDTVIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATS 509
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            LD+ + + I A L  L +  +TV+   H+ S+      D+++V+ EG  I  GR A ++
Sbjct: 510 ALDTESERAIQAALDELQK-NKTVLVIAHRLST--IEQADEILVVDEGEIIERGRHADLL 566
Query: 327 DYFGS 331
              G+
Sbjct: 567 AQDGA 571

>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 6/221 (2%)
Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS-S 168
           TRT+  LN VS  V  G++  ++G                      G +  +G++ ++ S
Sbjct: 15  TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLS 73
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
               T    Q  +++ H  +L + +    + LP +L    K E    V   L L    + 
Sbjct: 74  ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287
               P    +SGG+++RV+I + +  NP  LL DE TS LD  T + I+  L+ + R  G
Sbjct: 134 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
            T++   H+    + R+ D V V+S G  I     ++V  +
Sbjct: 192 LTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFSH 231

>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 93/181 (51%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG---RQFSSS-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE-- 208
           SG I+ +G   RQ +   L+ K G V+Q+ +L+   ++ E ++Y A    P  +T EE  
Sbjct: 398 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ 454
Query: 209 -KIEQAEMVIMELGLTRCRNSVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265
              E A  V       +  N+VVG  G L   +SGG+++R++I + +L NP  LLLDE T
Sbjct: 455 RVAEVANAVAFIRNFPQGFNTVVGEKGVL---LSGGQKQRIAIARALLKNPKILLLDEAT 511
Query: 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           S LD+     +   L  L   GRTV+   H+ S+   +  + V VL +G     G+  ++
Sbjct: 512 SALDAENEYLVQEALDRLM-DGRTVLVIAHRLST--IKNANMVAVLDQGKITEYGKHEEL 568
Query: 326 M 326
           +
Sbjct: 569 L 569

>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 12/210 (5%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFS----SSLKR 171
           L  VS  V PG+ LA++GP                    SG I  +G+  S    +SL+ 
Sbjct: 70  LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS-SGCIRIDGQDISQVTQASLRS 128
Query: 172 KTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
             G V QD VL+   T+ + + Y  +     ++  E   + A +    +       + VG
Sbjct: 129 HIGVVPQDTVLFND-TIADNIRYGRVTAGNDEV--EAAAQAAGIHDAIMAFPEGYRTQVG 185
Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
               + +SGGE++RV+I + +L  P  +LLDE TS LD++  + I A+L  +    RT I
Sbjct: 186 ERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTI 243
Query: 292 TTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
              H+ S+ +    D+++V+ +G  +  GR
Sbjct: 244 VVAHRLSTVVN--ADQILVIKDGCIVERGR 271

>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/181 (32%), Positives = 92/181 (50%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG---RQFSSS-LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE-- 208
           SG I+ +G   RQ +   L+ K G V+Q+ +L+   ++ E ++Y A    P  +T EE  
Sbjct: 429 SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILF-SCSIAENIAYGA--DDPSSVTAEEIQ 485
Query: 209 -KIEQAEMVIMELGLTRCRNSVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265
              E A  V       +  N+VVG  G L   +SGG+++R++I + +L NP  LLLDE T
Sbjct: 486 RVAEVANAVAFIRNFPQGFNTVVGEKGVL---LSGGQKQRIAIARALLKNPKILLLDEAT 542
Query: 266 SGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           S LD+     +   L  L   GRTV+   H  S+   +  + V VL +G     G+  ++
Sbjct: 543 SALDAENEYLVQEALDRLM-DGRTVLVIAHHLST--IKNANMVAVLDQGKITEYGKHEEL 599
Query: 326 M 326
           +
Sbjct: 600 L 600

>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 12/218 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS----SLK 170
           VL+GV+  VKPG L+A+LG                      G++  +     +     L+
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE-RGRVEVDELDVRTVKLKDLR 416
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
                V Q+ VL+   T+ E L +        ++    KI Q    I+ L          
Sbjct: 417 GHISAVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVER 475
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
           GG   R  SGG+++R+SI + ++  P  L+LD+ TS +D  T +RI+  L+   +G  T 
Sbjct: 476 GG---RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTF 532
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
           I T   P++ L    DK++VL EG     G   +++++
Sbjct: 533 IITQKIPTALLA---DKILVLHEGKVAGFGTHKELLEH 567

>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 97/221 (43%), Gaps = 6/221 (2%)
Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS-S 168
           TRT+  LN VS  V  G++  ++G                      G +  +G++ ++ S
Sbjct: 38  TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLS 96
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
               T    Q  +++ H  +L + +    + LP +L    K E    V   L L    + 
Sbjct: 97  ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287
               P    +SGG+++RV+I + +  NP  LL D+ TS LD  T + I+  L+ + R  G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
            T++   H+    + R+ D V V+S G  I     ++V  +
Sbjct: 215 LTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFSH 254

>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/221 (25%), Positives = 96/221 (43%), Gaps = 6/221 (2%)
Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS-S 168
           TRT+  LN VS  V  G++  ++G                      G +  +G++ ++ S
Sbjct: 38  TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT-EGSVLVDGQELTTLS 96
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
               T    Q   ++ H  +L + +    + LP +L    K E    V   L L    + 
Sbjct: 97  ESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-G 287
               P    +SGG+++RV+I + +  NP  LL D+ TS LD  T + I+  L+ + R  G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
            T++   H+    + R+ D V V+S G  I     ++V  +
Sbjct: 215 LTILLITHEXDV-VKRICDCVAVISNGELIEQDTVSEVFSH 254

>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 107  NKQTR-TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQF 165
            N  TR ++ VL G+S  VK G+ LA++G                     +G +  +G++ 
Sbjct: 1039 NYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEI 1097
Query: 166  SSS----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMEL 220
                   L+ + G V+Q+ +L+   ++ E ++Y    R+   ++ EE +  A E  I + 
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQF 1153
Query: 221  --GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
               L    N+ VG    + +SGG+++R++I + ++  P  LLLDE TS LD T ++++V 
Sbjct: 1154 IDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQ 1211
Query: 279  TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
                 AR GRT I   H+ S+   +  D +VV+  G     G   Q++
Sbjct: 1212 EALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLL 1257

>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 17/228 (7%)
Query: 107  NKQTR-TVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQF 165
            N  TR ++ VL G+S  VK G+ LA++G                     +G +  +G++ 
Sbjct: 1039 NYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP-MAGSVFLDGKEI 1097
Query: 166  SSS----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMEL 220
                   L+ + G V+Q+ +L+   ++ E ++Y    R+   ++ EE +  A E  I + 
Sbjct: 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSRV---VSYEEIVRAAKEANIHQF 1153
Query: 221  --GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
               L    N+ VG    + +SGG+++R++I + ++  P  LLLDE TS LD T ++++V 
Sbjct: 1154 IDSLPDKYNTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQ 1211
Query: 279  TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
                 AR GRT I   H+ S+   +  D +VV+  G     G   Q++
Sbjct: 1212 EALDKAREGRTCIVIAHRLST--IQNADLIVVIQNGKVKEHGTHQQLL 1257

>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235

Iteration: 1
 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%)
Query: 164 QFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGL 222
           + +   + K GFV Q   L P LT LE +    + +    ++ EE+ ++A E + M    
Sbjct: 76  ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
            R  N     P    +SGG+++RV+I + +  NP  +L D+PT  LDS T ++I+  L+ 
Sbjct: 136 ERFANH---KP--NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKK 190
Query: 283 L-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315
           L    G+TV+   H  +  + R  ++++ L +G 
Sbjct: 191 LNEEDGKTVVVVTHDIN--VARFGERIIYLKDGE 222

>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243

Iteration: 1
 Score = 59.3 bits (142), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 100/221 (45%), Gaps = 31/221 (14%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS----SLK 170
           +L  +S   +P  ++A  GP                    +G+IT +G+   +    + +
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWR 75
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC----- 225
            + GFV+QD  +    T+ E L+Y     L    T E+  +     +++L   R      
Sbjct: 76  SQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQ-----VLDLAFARSFVENM 125
Query: 226 ---RNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
               N+ VG    RG  ISGG+R+R++I +  L NP  L+LDE T+ LDS +   +   L
Sbjct: 126 PDQLNTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 281 RGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
             L + GRT +   H+ S+ +    DK+  + +G    SG+
Sbjct: 183 DSLMK-GRTTLVIAHRLSTIVDA--DKIYFIEKGQITGSGK 220

>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 45/154 (29%), Positives = 79/154 (51%), Gaps = 9/154 (5%)
Query: 164 QFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGL 222
           + +   + K GFV Q   L P LT LE +    + +    ++ EE+ ++A E + M    
Sbjct: 76  ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135
Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
            R  N     P    +SGG+++RV+I + +  NP  +L D+PT  LDS T ++I+  L+ 
Sbjct: 136 ERFANH---KP--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190
Query: 283 L-ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS 315
           L    G+TV+   H  +  + R  ++++ L +G 
Sbjct: 191 LNEEDGKTVVVVTHDIN--VARFGERIIYLKDGE 222

>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355

Iteration: 1
 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 16/227 (7%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSS--SLKRKT 173
           + GVS  ++ GE++ +LGP                     G +   G++ +     KR  
Sbjct: 31  VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT-KGDVWIGGKRVTDLPPQKRNV 89
Query: 174 GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSVVGG 232
           G V Q+  L+ H+TV + +S+           RE+++ + EM      L R  R      
Sbjct: 90  GLVFQNYALFQHMTVYDNVSFG---------LREKRVPKDEMDARVRELLRFMRLESYAN 140
Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGGRTVI 291
                +SGG+++RV++ + +   P  LL DEP + +D+   + +   +R +    G T +
Sbjct: 141 RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSV 200
Query: 292 TTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF 338
              H     L  + D+V+VL EG+    G   +V +  G++ +V  F
Sbjct: 201 FVTHDQEEAL-EVADRVLVLHEGNVEQFGTPEEVYEKPGTL-FVASF 245

>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 68/128 (53%), Gaps = 6/128 (4%)
Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
           L+ +   V Q   L+ H+TVLE +  A +  L   L++ +  E+A   + ++G+    + 
Sbjct: 91  LRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG--LSKHDARERALKYLAKVGI----DE 144
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
              G     +SGG+++RVSI + + + P  LL DEPTS LD      ++  ++ LA  G+
Sbjct: 145 RAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGK 204
Query: 289 TVITTIHQ 296
           T++   H+
Sbjct: 205 TMVVVTHE 212

>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 81/172 (47%), Gaps = 12/172 (6%)
Query: 156 GKITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA 213
           G++  NG   +     +R  GFV QD  L+PHL+V   ++Y       + + R E+  + 
Sbjct: 53  GEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYGL-----RNVERVERDRRV 107
Query: 214 EMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
             +  +LG+    +          +SGGER+RV++ + +++ P  LLLDEP S +D  T 
Sbjct: 108 REMAEKLGIAHLLDRKPAR-----LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTK 162
Query: 274 QRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
             ++  LR + R     I  +         + D+V V+  G  +  G+  ++
Sbjct: 163 GVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKEL 214

>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/148 (29%), Positives = 73/148 (49%), Gaps = 9/148 (6%)
Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT-RCRNS 228
           + K GFV Q   L P LT LE +    + +     + EE+ ++A   +    L  R  N 
Sbjct: 82  RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEERFANH 141
Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL-ARGG 287
                    +SGG+++RV+I + +  NP  +L DEPT  LDS T ++I   L+ L    G
Sbjct: 142 KPNQ-----LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDG 196
Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGS 315
           +TV+   H  +  + R  ++++ L +G 
Sbjct: 197 KTVVVVTHDIN--VARFGERIIYLKDGE 222

>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 100/220 (45%), Gaps = 12/220 (5%)
Query: 115 VLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNG---RQFS-SSLK 170
           VL  ++  +KPG+ +A++GP                     G+I  +G   R+   SSL+
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD-RGQILVDGIDIRKIKRSSLR 428
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
              G V QD +L+   TV E L Y       +++    K+  ++  I  L          
Sbjct: 429 SSIGIVLQDTILFST-TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTD 487
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
            G     +S G+R+ ++I +  L NP  L+LDE TS +D+ T + I A +  L   G+T 
Sbjct: 488 NG---EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME-GKTS 543
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
           I   H+ ++   +  D ++VL +G  +  G+  +++   G
Sbjct: 544 IIIAHRLNT--IKNADLIIVLRDGEIVEMGKHDELIQKRG 581

>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 98/184 (53%), Gaps = 20/184 (10%)
Query: 156 GKITYNG---RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
           G+I  +G   R+++ +SL+ +   V+Q+  L+   TV   ++YA      ++ +RE+  E
Sbjct: 398 GEILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEQYSREQIEE 452
Query: 212 QAEMVIMELGLTRCRN---SVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
            A M      + +  N   +V+G  G L   +SGG+R+R++I + +L +   L+LDE TS
Sbjct: 453 AARMAYAMDFINKMDNGLDTVIGENGVL---LSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            LD+ + + I A L  L +  RT +   H+ S+      D++VV+ +G  +  G    ++
Sbjct: 510 ALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEKADEIVVVEDGVIVERGTHNDLL 566
Query: 327 DYFG 330
           ++ G
Sbjct: 567 EHRG 570

>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG-RQFSSSLKRKTGFVTQ--DDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
           SG + Y+G R+    ++R  G   Q  +D  +    V + +++A     P +      + 
Sbjct: 63  SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR--DPVPLV 119
Query: 212 QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD-- 269
           +  M  + L     ++ V   P F  +SGGE++RV+I   ++  P  L+LDEP  GLD  
Sbjct: 120 KKAMEFVGLDFDSFKDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 174
Query: 270 -STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
             T   RIV   + L   G+TVI   H   + +  + D+VVVL +G  ++ G   + ++ 
Sbjct: 175 GKTDLLRIVEKWKTL---GKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEFLEK 230
Query: 329 F 329
           +
Sbjct: 231 Y 231

>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 87/181 (48%), Gaps = 18/181 (9%)
Query: 155 SGKITYNG-RQFSSSLKRKTGFVTQ--DDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
           SG + Y+G R+    ++R  G   Q  +D  +    V + +++A     P +      + 
Sbjct: 61  SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE-RVFDEVAFAVKNFYPDR--DPVPLV 117
Query: 212 QAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD-- 269
           +  M  + L     ++ V   P F  +SGGE++RV+I   ++  P  L+LDEP  GLD  
Sbjct: 118 KKAMEFVGLDFDSFKDRV---PFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 270 -STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
             T   RIV   + L   G+TVI   H   + +  + D+VVVL +G  ++ G   + ++ 
Sbjct: 173 GKTDLLRIVEKWKTL---GKTVILISHDIETVINHV-DRVVVLEKGKKVFDGTRMEFLEK 228
Query: 329 F 329
           +
Sbjct: 229 Y 229

>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/184 (27%), Positives = 97/184 (52%), Gaps = 20/184 (10%)
Query: 156 GKITYNG---RQFS-SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIE 211
           G I  +G   R+++ +SL+ +   V+Q+  L+   TV   ++YA      ++ +RE+  E
Sbjct: 398 GHILMDGHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYAR----TEEYSREQIEE 452
Query: 212 QAEMVIMELGLTRCRN---SVVG--GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
            A M      + +  N   +++G  G L   +SGG+R+R++I + +L +   L+LDE TS
Sbjct: 453 AARMAYAMDFINKMDNGLDTIIGENGVL---LSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            LD+ + + I A L  L +  RT +   H+ S+      D++VV+ +G  +  G  ++++
Sbjct: 510 ALDTESERAIQAALDELQK-NRTSLVIAHRLST--IEQADEIVVVEDGIIVERGTHSELL 566
Query: 327 DYFG 330
              G
Sbjct: 567 AQHG 570

>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 104 GEPNKQTRTVSVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR 163
           G  +K  +   VLN +S  + PGE+L ++G                     SG+I+ +G+
Sbjct: 8   GHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD-SGEISLSGK 66
Query: 164 Q-FSSSL-----KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI 217
             FS +      +R+ G++ Q+ VL+PHLTV   ++Y   L   K  T +E+ ++ E ++
Sbjct: 67  TIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYG--LGNGKGRTAQER-QRIEAML 123
Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI- 276
              G+     S + G     +SGG+++R ++ + +  +P  +LLDEP S LD    ++I 
Sbjct: 124 ELTGI-----SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIR 178
Query: 277 ---VATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEG 314
              +A LR     G++ +   H     L +  D++ V+ +G
Sbjct: 179 EDMIAALRA---NGKSAVFVSHDREEAL-QYADRIAVMKQG 215

>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 84/167 (50%), Gaps = 13/167 (7%)
Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCR 226
           +S++   G V QD +L+   T+   + Y  L    +++ +  K   A++      L +  
Sbjct: 89  NSIRSIIGIVPQDTILFNE-TIKYNILYGKLDATDEEVIKATK--SAQLYDFIEALPKKW 145
Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA---QRIVATLRGL 283
           +++VG    + +SGGER+R++I + +L +P  ++ DE TS LDS T    Q+ V  L   
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL--- 201
Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
            R  RT+I   H+ S+      + +++L++G  +  G    ++   G
Sbjct: 202 -RKNRTLIIIAHRLST--ISSAESIILLNKGKIVEKGTHKDLLKLNG 245

>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/281 (25%), Positives = 115/281 (40%), Gaps = 51/281 (18%)
Query: 68  FSILRESLHPVTLK----FEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMV 123
            S L  SL P+ +K    F+DV+++   H             PN     V VL G++  +
Sbjct: 1   MSPLSGSLAPLNMKGLVKFQDVSFAYPNH-------------PN-----VQVLQGLTFTL 42
Query: 124 KPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR---QFSSS-LKRKTGFVTQD 179
            PG++ A++GP                     GK+  +G    Q+    L  +   V Q+
Sbjct: 43  YPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQE 101
Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-------- 231
            +L+   +  E ++Y         LTR   +E+   V ME G     + + G        
Sbjct: 102 PLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESG---AHDFISGFPQGYDTE 149
Query: 232 -GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRT 289
            G     +SGG+R+ V++ + ++  P  L+LD+ TS LD+    R+   L        RT
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
           V+   HQ S  L      ++ L EGS    G   Q+M+  G
Sbjct: 210 VLLITHQLS--LAERAHHILFLKEGSVCEQGTHLQLMERGG 248

>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/220 (25%), Positives = 97/220 (44%), Gaps = 22/220 (10%)
Query: 116 LNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS------L 169
           L G++  +K GE+ A+LG                     SG+I ++ +    S      L
Sbjct: 24  LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRKGIMKL 82
Query: 170 KRKTGFVTQD-DVLYPHLTVLETLSYAAL-LRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
           +   G V QD D      +V + +S+ A+ ++LP+   R+    + +  +   G+   ++
Sbjct: 83  RESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRK----RVDNALKRTGIEHLKD 138
Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG- 286
                     +S G++KRV+I   +++ P  L+LDEPT+GLD      I+  L  + +  
Sbjct: 139 KPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL 193
Query: 287 GRTVITTIHQPS-SRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           G T+I   H      LY   D V V+ EG  I  G   +V
Sbjct: 194 GITIIIATHDIDIVPLY--CDNVFVMKEGRVILQGNPKEV 231

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 14/178 (7%)
Query: 155 SGKITYNGRQFSSS-----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEK 209
            GKI +NG+  ++       +     V +   ++P LTV E L   A  R  K+  + + 
Sbjct: 60  KGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRD- 118
Query: 210 IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
               E +       + R   +GG L    SGGE++ ++IG+ +   P  L  DEP+ GL 
Sbjct: 119 ---LEWIFSLFPRLKERLKQLGGTL----SGGEQQXLAIGRALXSRPKLLXXDEPSLGLA 171
Query: 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
                 +   ++ + + G T I  + Q +    ++     VL  G  +  G+A++++D
Sbjct: 172 PILVSEVFEVIQKINQEG-TTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 46/219 (21%), Positives = 99/219 (45%), Gaps = 13/219 (5%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGRQFSSS---LK 170
            +L G+S  ++ GE+  ++GP                    SG +T  G+        ++
Sbjct: 29  EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS-SGIVTVFGKNVVEEPHEVR 87
Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           +   ++ ++   Y ++  +E L + A          EE +E+A   I  LG  + ++ V 
Sbjct: 88  KLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-TEIAGLG-EKIKDRV- 144
Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
                   S G  +++ I + ++VNP   +LDEPTSGLD   A+ +   L+  ++ G T+
Sbjct: 145 -----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTI 199
Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
           + + H      + + D++ ++  G+ + +G   ++ + +
Sbjct: 200 LVSSHNMLEVEF-LCDRIALIHNGTIVETGTVEELKERY 237

>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 70/281 (24%), Positives = 113/281 (40%), Gaps = 51/281 (18%)
Query: 68  FSILRESLHPVTLK----FEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMV 123
            S L  SL P+ +K    F+DV+++   H             PN     V VL G++  +
Sbjct: 1   MSPLSGSLAPLNMKGLVKFQDVSFAYPNH-------------PN-----VQVLQGLTFTL 42
Query: 124 KPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR---QFSSS-LKRKTGFVTQD 179
            PG++ A++GP                     GK+  +G    Q+    L  +   V Q+
Sbjct: 43  YPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQE 101
Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-------- 231
            +L+   +  E ++Y         LTR   +E+   V ME G     + + G        
Sbjct: 102 PLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESG---AHDFISGFPQGYDTE 149
Query: 232 -GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRT 289
            G     +SGG+R+ V++ + ++  P  L+LD  TS LD+    R+   L        RT
Sbjct: 150 VGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
           V+    Q S  L      ++ L EGS    G   Q+M+  G
Sbjct: 210 VLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLMERGG 248

>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 65/217 (29%), Positives = 93/217 (42%), Gaps = 17/217 (7%)
Query: 114 SVLNGVSGMVKPGELLAMLGPXXXXXXXXXXXXXXXXXXXFS-GKITYNGR---QFSSSL 169
           ++L GV+ +V  GE+ A++GP                      G+I  +G    + S   
Sbjct: 17  TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 170 KRKTGFVT--QDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-EQAEMVIMELGLTRCR 226
           + + G     Q  V  P +T+   L  A    L  KL RE  + E    V   L L    
Sbjct: 77  RARKGLFLAFQYPVEVPGVTIANFLRLA----LQAKLGREVGVAEFWTKVKKALELLDWD 132
Query: 227 NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG 286
            S +   L  G SGGE+KR  I Q +++ P+  +LDE  SGLD   A ++VA      RG
Sbjct: 133 ESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD-IDALKVVARGVNAMRG 191
Query: 287 ---GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
              G  VIT  H      Y   DKV V+ +G  + +G
Sbjct: 192 PNFGALVIT--HYQRILNYIQPDKVHVMMDGRVVATG 226

>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 40/84 (47%)
Query: 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQ 296
           G SGGE+KR  I Q  ++ P   +LDE  SGLD    + +   +  L  G R+ I   H 
Sbjct: 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHY 204
Query: 297 PSSRLYRMFDKVVVLSEGSPIYSG 320
                Y   D V VL +G  + SG
Sbjct: 205 QRILDYIKPDYVHVLYQGRIVKSG 228

>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 52/114 (45%), Gaps = 10/114 (8%)
Query: 207 EEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS 266
           EEKI  A + + E  LTR  N         G SGGE+KR  I Q  ++ P   +LDE  S
Sbjct: 144 EEKI--ALLKMPEDLLTRSVNV--------GFSGGEKKRNDILQMAVLEPELCILDESDS 193
Query: 267 GLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           GLD    + +   +  L  G R+ I   H      Y   D V VL +G  + SG
Sbjct: 194 GLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247

>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITT 293
           F  +SGG+R+ + I + +      +LLDEPTS LD      +++ L  LA+    TV+ T
Sbjct: 126 FTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFT 185
Query: 294 IHQPS 298
            HQP+
Sbjct: 186 THQPN 190

>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 200 LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCL 259
           +PK+   EE +E+A  ++  L L+   +   G      +SGG+ K V IG+ ++ NP  +
Sbjct: 124 IPKE---EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMI 175
Query: 260 LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319
           ++DEP +G+    A  I   +  L   G T +   H+    L    D + V+  G  I  
Sbjct: 176 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAE 234
Query: 320 GRAAQ 324
           GR  +
Sbjct: 235 GRGEE 239

>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 200 LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCL 259
           +PK+   EE +E+A  ++  L L+   +   G      +SGG+ K V IG+ ++ NP  +
Sbjct: 124 IPKE---EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMI 175
Query: 260 LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319
           ++DEP +G+    A  I   +  L   G T +   H+    L    D + V+  G  I  
Sbjct: 176 VMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAE 234
Query: 320 GRAAQ 324
           GR  +
Sbjct: 235 GRGEE 239

>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 9/125 (7%)
Query: 200 LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCL 259
           +PK+   EE +E+A  ++  L L+   +   G      +SGG+ K V IG+ ++ NP  +
Sbjct: 124 IPKE---EEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMI 175
Query: 260 LLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYS 319
           ++D+P +G+    A  I   +  L   G T +   H+    L    D + V+  G  I  
Sbjct: 176 VMDQPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVL-NYIDHLYVMFNGQIIAE 234
Query: 320 GRAAQ 324
           GR  +
Sbjct: 235 GRGEE 239

>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 112/281 (39%), Gaps = 51/281 (18%)
Query: 68  FSILRESLHPVTLK----FEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMV 123
            S L  SL P+ +K    F+DV+++   H             PN     V VL G++  +
Sbjct: 1   MSPLSGSLAPLNMKGLVKFQDVSFAYPNH-------------PN-----VQVLQGLTFTL 42
Query: 124 KPGELLAMLGPXXXXXXXXXXXXXXXXXXXFSGKITYNGR---QFSSS-LKRKTGFVTQD 179
            PG++ A++GP                     GK+  +G    Q+    L  +   V Q+
Sbjct: 43  YPGKVTALVGPNGSGKSTVAALLQNLYQPT-GGKVLLDGEPLVQYDHHYLHTQVAAVGQE 101
Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG-------- 231
            +L+   +  E ++Y         LTR   +E+   V ME G     + + G        
Sbjct: 102 PLLFGR-SFRENIAYG--------LTRTPTMEEITAVAMESG---AHDFISGFPQGYDTE 149
Query: 232 -GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL-RGLARGGRT 289
            G     ++ G+R+ V++ + ++  P  L+LD  TS LD+    R+   L        RT
Sbjct: 150 VGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRT 209
Query: 290 VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
           V+    Q S  L      ++ L EGS    G   Q+M+  G
Sbjct: 210 VLLITQQLS--LAERAHHILFLKEGSVCEQGTHLQLMERGG 248

>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 235 FRGISGGERKRVSIGQEMLV------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGR 288
           +R +SGGE++RV + + +         P  L LDEPTS LD    Q  +  LR L R   
Sbjct: 139 YRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEP 198
Query: 289 TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
             +  +    +      D++++L++G  +  G   +V++
Sbjct: 199 LAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	691
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-35
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	1e-34
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	4e-34
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	8e-34
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	9e-31
2ghi_A	260	Transport protein; multidrug resistance protein, M	2e-30
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	3e-30
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	1e-28
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	3e-28
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	3e-28
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	5e-28
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	5e-28
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	4e-27
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	5e-27
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	2e-26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	1e-23
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	2e-26
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	2e-26
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	7e-26
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	1e-25
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	3e-24
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	2e-25
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-25
1b0u_A	262	Histidine permease; ABC transporter, transport pro	3e-25
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	5e-25
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	7e-25
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	8e-25
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-23
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-24
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	2e-20
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	7e-24
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	1e-23
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	5e-23
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	3e-22
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	8e-22
1g6h_A	257	High-affinity branched-chain amino acid transport	3e-22
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	1e-21
1ji0_A	240	ABC transporter; ATP binding protein, structural g	1e-20
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	2e-19
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	1e-18
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	4e-18
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	4e-18
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	4e-17
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	4e-17
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	1e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-16
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	5e-07
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-15
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	7e-15
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	1e-13
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	1e-13
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	9e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	1e-11
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	3e-09
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	5e-08
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	6e-07
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	3e-06
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	3e-05
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	4e-04
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	6e-04

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score =  133 bits (336), Expect = 1e-35
 Identities = 44/208 (21%), Positives = 93/208 (44%), Gaps = 19/208 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           VL  ++  ++ G ++   GP+G GKTTLL  ++  L+    G+I YNG   +  +K K  
Sbjct: 24  VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK-VKGKIF 81

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
           F+ ++ ++   ++V + L   A L   K    + +I      +  + +   +  +     
Sbjct: 82  FLPEEIIVPRKISVEDYLKAVASLYGVKV--NKNEIMD---ALESVEVLDLKKKL----- 131

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITT 293
              +S G  +RV +   +LVN    +LD+P   +D  +  +++ ++  + +  G  +I++
Sbjct: 132 -GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 190

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
             + S       D    L + S     +
Sbjct: 191 REELS-----YCDVNENLHKYSTKIDKK 213

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score =  131 bits (332), Expect = 1e-34
 Identities = 52/229 (22%), Positives = 109/229 (47%), Gaps = 27/229 (11%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFSSSL 169
             +L G+S  ++ GE+  ++GP+G+GKTT L  ++  ++   SG +T  G    +    +
Sbjct: 28  KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVVEEPHEV 86

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSY-AALLRLPKKLTREEKIEQA-EMVIMELGLTRCRN 227
           ++   ++ ++   Y ++  +E L + A           EE +E+A E+     GL     
Sbjct: 87  RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS-EIEEMVERATEIA----GLGEKIK 141

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
             V        S G  +++ I + ++VNP   +LDEPTSGLD   A+ +   L+  ++ G
Sbjct: 142 DRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196

Query: 288 RTVITTIHQPSSRLY-----RMFDKVVVLSEGSPIYSGRAAQVMDYFGS 331
            T++ + H             + D++ ++  G+ + +G   ++ + + +
Sbjct: 197 LTILVSSH------NMLEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score =  130 bits (330), Expect = 4e-34
 Identities = 48/224 (21%), Positives = 97/224 (43%), Gaps = 20/224 (8%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS------ 168
           +L  +S  +  G+   + G +G+GKTTLL  L        SG +   G+           
Sbjct: 36  ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-ATSGTVNLFGKMPGKVGYSAET 94

Query: 169 LKRKTGFVTQD--DVLYPHLTVLET-LS-YAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
           +++  GFV+    +       V++  +S     + + + +  E +  +A  ++  +G++ 
Sbjct: 95  VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIR-NEAHQLLKLVGMSA 153

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
                        +S GE++RV I + ++  P  L+LDEP +GLD    + +++ L  L+
Sbjct: 154 KAQQ-----YIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLS 208

Query: 285 RGGR--TVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
                  +I   H     +   F K+++L +G  I  G    ++
Sbjct: 209 DSYPTLAMIYVTHFIEE-ITANFSKILLLKDGQSIQQGAVEDIL 251

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score =  128 bits (325), Expect = 8e-34
 Identities = 56/224 (25%), Positives = 92/224 (41%), Gaps = 29/224 (12%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
            L  +SG V+ GE+L ++GP+G+GK+TLL  +AG   G   G I + G+   +     L 
Sbjct: 15  RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLA 72

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
               +++Q         V     Y  L +  K  TR E +       + L     R+   
Sbjct: 73  LHRAYLSQQQTPPFATPVWH---YLTLHQHDK--TRTELLNDV-AGALALDDKLGRS--- 123

Query: 231 GGPLFRGISGGERKRVSI-------GQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                  +SGGE +RV +         +       LLLDEP + LD      +   L  L
Sbjct: 124 ----TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 179

Query: 284 ARGGRTVITTIHQPSSRLYRMF-DKVVVLSEGSPIYSGRAAQVM 326
           ++ G  ++ + H  +         +  +L  G  + SGR  +V+
Sbjct: 180 SQQGLAIVMSSHDLN--HTLRHAHRAWLLKGGKMLASGRREEVL 221

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score =  120 bits (303), Expect = 9e-31
 Identities = 56/222 (25%), Positives = 94/222 (42%), Gaps = 35/222 (15%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           +   ++  +  G++LA+LG +G GK+TLL  L G  R    GKI          + +  G
Sbjct: 20  LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI-QGKIE---------VYQSIG 69

Query: 175 FVTQDDVLYPHLTVLETLS-----YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           FV Q        +VL+ +      +      PK        + A   +  L LT      
Sbjct: 70  FVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKS----HDYQVAMQALDYLNLTHLAKRE 125

Query: 230 VGGPLFRGISGGERKRVSIG----QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
                   +SGG+R+ + I      E       +LLDEPTS LD      +++ L  LA+
Sbjct: 126 FT-----SLSGGQRQLILIARAIASE----CKLILLDEPTSALDLANQDIVLSLLIDLAQ 176

Query: 286 -GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
               TV+ T HQP+  +  + +K ++L++ +    G    ++
Sbjct: 177 SQNMTVVFTTHQPNQVV-AIANKTLLLNKQN-FKFGETRNIL 216

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260

 Score =  119 bits (300), Expect = 2e-30
 Identities = 60/234 (25%), Positives = 108/234 (46%), Gaps = 41/234 (17%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF---SGKITYNG---RQFS-S 167
            L  ++  +  G   A++G +GSGK+T+      +L  +F    G I   G    +++ +
Sbjct: 35  TLKSINFFIPSGTTCALVGHTGSGKSTIA-----KLLYRFYDAEGDIKIGGKNVNKYNRN 89

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM-----VIMEL-- 220
           S++   G V QD +L+ + T+   + Y  L       T EE I+  +       I  L  
Sbjct: 90  SIRSIIGIVPQDTILF-NETIKYNILYGKL-----DATDEEVIKATKSAQLYDFIEALPK 143

Query: 221 GLTRCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
                 +++VG    +G+  SGGER+R++I + +L +P  ++ DE TS LDS T      
Sbjct: 144 KW----DTIVGN---KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQK 196

Query: 279 TLRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEGSPIYSGRAAQVMDYFG 330
            +  L +  RT+I   H    RL      + +++L++G  +  G    ++   G
Sbjct: 197 AVEDLRK-NRTLIIIAH----RLSTISSAESIILLNKGKIVEKGTHKDLLKLNG 245

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306

 Score =  120 bits (302), Expect = 3e-30
 Identities = 74/232 (31%), Positives = 114/232 (49%), Gaps = 42/232 (18%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNG---RQFS- 166
            L  VS  V PG+ LA++GPSG+GK+T+L     RL  +F    SG I  +G    Q + 
Sbjct: 69  TLQDVSFTVMPGQTLALVGPSGAGKSTIL-----RLLFRFYDISSGCIRIDGQDISQVTQ 123

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL- 220
           +SL+   G V QD VL+ + T+ + + Y  +         +E    A+       IM   
Sbjct: 124 ASLRSHIGVVPQDTVLF-NDTIADNIRYGRV-----TAGNDEVEAAAQAAGIHDAIMAFP 177

Query: 221 -GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            G      + VG    RG  +SGGE++RV+I + +L  P  +LLDE TS LD++  + I 
Sbjct: 178 EGY----RTQVGE---RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230

Query: 278 ATLRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEGSPIYSGRAAQVMD 327
           A+L  +    RT I   H    RL      D+++V+ +G  +  GR   ++ 
Sbjct: 231 ASLAKVCA-NRTTIVVAH----RLSTVVNADQILVIKDGCIVERGRHEALLS 277

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243

 Score =  114 bits (287), Expect = 1e-28
 Identities = 64/215 (29%), Positives = 104/215 (48%), Gaps = 33/215 (15%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SSLK 170
           +L  +S   +P  ++A  GPSG GK+T+  +L  R     +G+IT +G      S  + +
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIF-SLLERFYQPTAGEITIDGQPIDNISLENWR 75

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL--GLT 223
            + GFV+QD  +    T+ E L+Y     L    T E+  +  ++      +  +   L 
Sbjct: 76  SQIGFVSQDSAIM-AGTIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMPDQL- 129

Query: 224 RCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
              N+ VG    RG+  SGG+R+R++I +  L NP  L+LDE T+ LDS +   +   L 
Sbjct: 130 ---NTEVGE---RGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183

Query: 282 GLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEG 314
            L + GRT +   H    RL      DK+  + +G
Sbjct: 184 SLMK-GRTTLVIAH----RLSTIVDADKIYFIEKG 213

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224

 Score =  112 bits (282), Expect = 3e-28
 Identities = 71/222 (31%), Positives = 103/222 (46%), Gaps = 32/222 (14%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
            K  R   +L G+S  VK GE ++++G SGSGK+TLL  L G L     GK+   G++  
Sbjct: 11  KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYIL-GLLDAPTEGKVFLEGKEVD 69

Query: 167 -------SSL-KRKTGFVTQDDVLYPHLTVLET----LSYAALLRLPKKLTREEKIEQAE 214
                  S L  RK GFV Q   L P LT LE     +             ++E  E+ E
Sbjct: 70  YTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM-------GKPKKEAKERGE 122

Query: 215 MVIMELGLT-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTA 273
            ++ ELGL  +        P    +SGGE++RV+I + +   P  L  DEPT  LDS   
Sbjct: 123 YLLSELGLGDKLSRK----P--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANT 176

Query: 274 QRIVATLRGLARGGRTVITTIHQP-----SSRLYRMFDKVVV 310
           +R++     +  GG +++   H+      + R   M D  VV
Sbjct: 177 KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score =  113 bits (284), Expect = 3e-28
 Identities = 48/213 (22%), Positives = 84/213 (39%), Gaps = 20/213 (9%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
           + +      L  ++  V  GE + +LGP+GSGKTTLL A++G L   +SG I  NG +  
Sbjct: 12  SGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL--PYSGNIFINGMEVR 68

Query: 167 SSLKRKTGFVTQDDVLYP-HLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRC 225
             ++    + T     Y   +TV + +       L K L R+  +E  + + +   + R 
Sbjct: 69  K-IRNYIRYSTNLPEAYEIGVTVNDIVYLY--EEL-KGLDRDLFLEMLKALKLGEEILR- 123

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
           R           +S G+   V     +   P  + LDEP   +D+     I   ++    
Sbjct: 124 RK-----L--YKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY-- 174

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIY 318
            G+  I   H+         +       G+ + 
Sbjct: 175 -GKEGILVTHELDMLN-LYKEYKAYFLVGNRLQ 205

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247

 Score =  112 bits (282), Expect = 5e-28
 Identities = 66/227 (29%), Positives = 122/227 (53%), Gaps = 34/227 (14%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SSLK 170
           +L+ ++  +K GE++ ++G SGSGK+TL T L  R     +G++  +G        + L+
Sbjct: 24  ILDNINLSIKQGEVIGIVGRSGSGKSTL-TKLIQRFYIPENGQVLIDGHDLALADPNWLR 82

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL--GLT 223
           R+ G V QD+VL  + ++++ +S A        ++ E+ I  A++      I EL  G  
Sbjct: 83  RQVGVVLQDNVLL-NRSIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGY- 135

Query: 224 RCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
              N++VG    +G   SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  + 
Sbjct: 136 ---NTIVGE---QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189

Query: 282 GLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEGSPIYSGRAAQVM 326
            + + GRTVI   H    RL   +  D+++V+ +G  +  G+  +++
Sbjct: 190 KICK-GRTVIIIAH----RLSTVKNADRIIVMEKGKIVEQGKHKELL 231

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266

 Score =  112 bits (283), Expect = 5e-28
 Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 21/227 (9%)

Query: 106 PNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF 165
                     L  VS ++  GE L + G +GSGK+TLL  +AG +    SG + Y+G + 
Sbjct: 13  HRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT-SGDVLYDGERK 71

Query: 166 S-SSLKRKTGFVTQDDVLYPH-----LTVLETLSYAALLRLPKKL-TREEKIEQAEMVIM 218
               ++R  G   Q    YP        V + +++A      K      + +   +  + 
Sbjct: 72  KGYEIRRNIGIAFQ----YPEDQFFAERVFDEVAFA-----VKNFYPDRDPVPLVKKAME 122

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
            +GL    +S      F  +SGGE++RV+I   ++  P  L+LDEP  GLD      ++ 
Sbjct: 123 FVGLDF--DSFKDRVPFF-LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLR 179

Query: 279 TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
            +      G+TVI   H   + +    D+VVVL +G  ++ G   + 
Sbjct: 180 IVEKWKTLGKTVILISHDIET-VINHVDRVVVLEKGKKVFDGTRMEF 225

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275

 Score =  110 bits (277), Expect = 4e-27
 Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 24/222 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS------ 168
            L G++  +K GE+ A+LG +G GK+TL     G L+   SG+I ++ +    S      
Sbjct: 23  ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS-SGRILFDNKPIDYSRKGIMK 81

Query: 169 LKRKTGFVTQ--DDVLYPHLTVLETLSYAALLRLPK--KLTREEKIEQAEMVIMELGLTR 224
           L+   G V Q  D+ L+   +V + +S+          KL  +E  ++ +  +   G+  
Sbjct: 82  LRESIGIVFQDPDNQLFSA-SVYQDVSFG-----AVNMKLPEDEIRKRVDNALKRTGIEH 135

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
            ++     P    +S G++KRV+I   +++ P  L+LDEPT+GLD      I+  L  + 
Sbjct: 136 LKDK----PTHC-LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQ 190

Query: 285 R-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQV 325
           +  G T+I   H     +    D V V+ EG  I  G   +V
Sbjct: 191 KELGITIIIATHDIDI-VPLYCDNVFVMKEGRVILQGNPKEV 231

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235

 Score =  109 bits (274), Expect = 5e-27
 Identities = 61/214 (28%), Positives = 105/214 (49%), Gaps = 21/214 (9%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS----- 166
            +  L  V+  +K GE ++++GPSGSGK+T+L  + G L     G++  +  + +     
Sbjct: 17  IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNII-GCLDKPTEGEVYIDNIKTNDLDDD 75

Query: 167 --SSLKRKT-GFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
             + ++R   GFV Q   L P LT LE +    + +    ++ EE+ ++A   +    L 
Sbjct: 76  ELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELE 135

Query: 224 -RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
            R  N     P    +SGG+++RV+I + +  NP  +L D+PT  LDS T ++I+  L+ 
Sbjct: 136 ERFANHK---P--NQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKK 190

Query: 283 L-ARGGRTVITTIHQP-----SSRLYRMFDKVVV 310
           L    G+TV+   H         R+  + D  V 
Sbjct: 191 LNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  113 bits (285), Expect = 2e-26
 Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 25/214 (11%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
            L    G ++ GE++ ++GP+G GKTT +  LAG       GK+ ++             
Sbjct: 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKVEWDL---------TVA 420

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
           +  Q        TV E LS         KL       +   ++  LG+    +  V    
Sbjct: 421 YKPQYIKAEYEGTVYELLSKI----DSSKLNSNFYKTE---LLKPLGIIDLYDRNVED-- 471

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITT 293
              +SGGE +RV+I   +L +    LLDEP++ LD      +   +R L     +T +  
Sbjct: 472 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            H     +  + D+++V  EG P   GRA   M 
Sbjct: 529 EHDVLM-IDYVSDRLIVF-EGEPGRHGRALPPMG 560

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score =  104 bits (262), Expect = 1e-23
 Identities = 51/219 (23%), Positives = 93/219 (42%), Gaps = 25/219 (11%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL-----RGKFSGKITYNGRQFSS 167
            + +     +VK G ++ ++GP+G+GKTT +  LAG+L         S        + + 
Sbjct: 104 NAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNE 163

Query: 168 S----LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
                 + K G +    V+ P     + L  A   ++ + L + +++ + E V+ EL L 
Sbjct: 164 LQNYFERLKNGEIRP--VVKPQYV--DLLPKAVKGKVRELLKKVDEVGKFEEVVKELELE 219

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
              +  +       +SGGE +RV+I   +L        DEP+S LD     ++   +R L
Sbjct: 220 NVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL 274

Query: 284 ARGGRTVITTIHQPSSRLY---RMFDKVVVLSEGSPIYS 319
           A  G+ V+   H     L     + D + V+     +Y 
Sbjct: 275 ANEGKAVLVVEH----DLAVLDYLSDVIHVVYGEPGVYG 309

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240

 Score =  107 bits (269), Expect = 2e-26
 Identities = 58/229 (25%), Positives = 101/229 (44%), Gaps = 35/229 (15%)

Query: 126 GELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNGRQFSS--SLKRKTGFVTQD 179
            +   +LGP+G+GK+  L  +AG           G++  NG   +     +R  GFV QD
Sbjct: 24  RDYCVLLGPTGAGKSVFLELIAG-----IVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78

Query: 180 DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGIS 239
             L+PHL+V   ++Y  L  + +        E AE + +   L R        P    +S
Sbjct: 79  YALFPHLSVYRNIAY-GLRNVERVERDRRVREMAEKLGIAHLLDR-------KP--ARLS 128

Query: 240 GGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI---HQ 296
           GGER+RV++ + +++ P  LLLDEP S +D  T   ++  LR + R     +  +   H 
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQR--EFDVPILHVTHD 186

Query: 297 PSSRLYRMFDKVVVLSEG------SP--IYSGRAAQVMDYFGSIGYVPG 337
                  + D+V V+  G          ++S +  +V ++  +   +  
Sbjct: 187 LIEAA-MLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLK 234

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score =  109 bits (276), Expect = 2e-26
 Identities = 62/217 (28%), Positives = 104/217 (47%), Gaps = 31/217 (14%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNGRQFSS 167
              VLN +S  + PGE+L ++G SG GKTTLL  LAG     F    SG+I+ +G+   S
Sbjct: 16  NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAG-----FEQPDSGEISLSGKTIFS 70

Query: 168 SL------KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMEL 220
                   +R+ G++ Q+ VL+PHLTV   ++Y       +     ++IE   E+  +  
Sbjct: 71  KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS- 129

Query: 221 GLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATL 280
            L          P    +SGG+++R ++ + +  +P  +LLDEP S LD    ++I   +
Sbjct: 130 ELAGRY------P--HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDM 181

Query: 281 RGLARGGRTVITTI---HQPSSRLYRMFDKVVVLSEG 314
               R      + +   H     L +  D++ V+ +G
Sbjct: 182 IAALR--ANGKSAVFVSHDREEAL-QYADRIAVMKQG 215

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score =  108 bits (272), Expect = 7e-26
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 33/216 (15%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNGRQFSS 167
               + GVS  ++ GE++ +LGPSGSGKTT+L  +AG           G +   G++ + 
Sbjct: 27  GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAG-----LERPTKGDVWIGGKRVTD 81

Query: 168 --SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGLTR 224
               KR  G V Q+  L+ H+TV + +S+    +   K   + ++ +    + +E     
Sbjct: 82  LPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYAN 140

Query: 225 CRNSVVGGPLFRGI---SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
                      R     SGG+++RV++ + +   P  LL DEP + +D+   + +   +R
Sbjct: 141 -----------RFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVR 189

Query: 282 GLARGGRTVITTI---HQPSSRLYRMFDKVVVLSEG 314
            +       +T++   H     L  + D+V+VL EG
Sbjct: 190 QVHD--EMGVTSVFVTHDQEEAL-EVADRVLVLHEG 222

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  110 bits (277), Expect = 1e-25
 Identities = 50/215 (23%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
            L   +G  K GE++ +LGP+G GKTT    L G +     G +T   +     L  K  
Sbjct: 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-ADEGSVTPEKQ----ILSYKPQ 337

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
            +  +       TV +       L    K          E V   L L R   S V    
Sbjct: 338 RIFPN----YDGTVQQ------YLENASKDALSTSSWFFEEVTKRLNLHRLLESNV---- 383

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITT 293
              +SGGE +++ I   +       +LD+P+S LD      +   ++ + R         
Sbjct: 384 -NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFII 442

Query: 294 IHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDY 328
            H  S     + D+++V  +G P  +G A   +  
Sbjct: 443 DHDLSI-HDYIADRIIVF-KGEPEKAGLATSPVTL 475

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score =  106 bits (266), Expect = 3e-24
 Identities = 45/218 (20%), Positives = 87/218 (39%), Gaps = 27/218 (12%)

Query: 122 MVKPGELLAMLGPSGSGKTTLLTALAGRLR---GKFSGKITYN--GRQFSSSLKRKTGFV 176
             K   +L +LG +G GKTT+L  LAG +    G  + K+  +   ++F      +    
Sbjct: 21  TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGK---EIYNY 77

Query: 177 TQD---DVLYPHLTV--LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG 231
            ++   + L     +  +E  S      + + LT+ ++  + + V   L +T   N    
Sbjct: 78  FKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDAN 137

Query: 232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
                 +SGG  +R+ +   +L      + D+P+S LD      +   +R L +  + VI
Sbjct: 138 I-----LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLK-NKYVI 191

Query: 292 TTIHQPSSRLY---RMFDKVVVLSEGSPIYSGRAAQVM 326
              H     L     + D + ++  G     GR ++  
Sbjct: 192 VVDH----DLIVLDYLTDLIHII-YGESSVYGRVSKSY 224

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score =  105 bits (264), Expect = 2e-25
 Identities = 74/262 (28%), Positives = 120/262 (45%), Gaps = 44/262 (16%)

Query: 90  NLHTSKGSCFATSHGEP-------NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTL 142
           + H S G     SH           K   ++ VL G++  ++ GE++ ++GPSGSGK+T 
Sbjct: 7   HHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTF 66

Query: 143 LTALAGRLRGKFSGKITYNGRQFSSSLK------RKTGFVTQDDVLYPHLTVLETLSYAA 196
           L  L   L     G+I  +G    +          + G V Q   L+PH+TVL  ++ A 
Sbjct: 67  LRCL-NLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLA- 124

Query: 197 LLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG-----ISGGERKRVSIGQE 251
               P K+ +  + E+AE   MEL L +     VG           +SGG+ +RV+I + 
Sbjct: 125 ----PMKVRKWPR-EKAEAKAMEL-LDK-----VGLKDKAHAYPDSLSGGQAQRVAIARA 173

Query: 252 MLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRM-F----- 305
           + + P  +L DEPTS LD      +++ ++ LA  G T++   H+       M F     
Sbjct: 174 LAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE-------MGFAREVG 226

Query: 306 DKVVVLSEGSPIYSGRAAQVMD 327
           D+V+ +  G  I  G+   + D
Sbjct: 227 DRVLFMDGGYIIEEGKPEDLFD 248

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score =  107 bits (269), Expect = 2e-25
 Identities = 58/188 (30%), Positives = 95/188 (50%), Gaps = 26/188 (13%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNGRQFSS--S 168
            L+ +S  V+ GE   +LGP+G+GKT  L  +AG     F    SG+I  +G+  +    
Sbjct: 15  SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-----FHVPDSGRILLDGKDVTDLSP 69

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGLTRCRN 227
            K    FV Q+  L+PH+ V + L +   +R+ KK+   +++      + +E  L R   
Sbjct: 70  EKHDIAFVYQNYSLFPHMNVKKNLEFG--MRM-KKIKDPKRVLDTARDLKIEHLLDR--- 123

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGG 287
                P    +SGGE++RV++ + ++ NP  LLLDEP S LD  T +     L  L +  
Sbjct: 124 ----NP--LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHK-- 175

Query: 288 RTVITTIH 295
           +  +T +H
Sbjct: 176 KNKLTVLH 183

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262

 Score =  104 bits (263), Expect = 3e-25
 Identities = 65/239 (27%), Positives = 105/239 (43%), Gaps = 43/239 (17%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS------ 168
           VL GVS   + G++++++G SGSGK+T L  +   L     G I  NG+  +        
Sbjct: 21  VLKGVSLQARAGDVISIIGSSGSGKSTFLRCI-NFLEKPSEGAIIVNGQNINLVRDKDGQ 79

Query: 169 -----------LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLP---KKLTREEKIEQAE 214
                      L+ +   V Q   L+ H+TVLE +  A     P     L++ +  E+A 
Sbjct: 80  LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA-----PIQVLGLSKHDARERAL 134

Query: 215 MVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQ 274
             + ++G+           L    SGG+++RVSI + + + P  LL DEPTS LD     
Sbjct: 135 KYLAKVGIDERAQGKYPVHL----SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVG 190

Query: 275 RIVATLRGLARGGRTVITTIHQPSSRLYRM-F-----DKVVVLSEGSPIYSGRAAQVMD 327
            ++  ++ LA  G+T++   H+       M F       V+ L +G     G   QV  
Sbjct: 191 EVLRIMQQLAEEGKTMVVVTHE-------MGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578

 Score =  108 bits (273), Expect = 5e-25
 Identities = 73/219 (33%), Positives = 107/219 (48%), Gaps = 42/219 (19%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNG---RQFS- 166
           +L  ++  ++ GE +A +G SG GK+TL   L  R    F    SG+I  +G   + F  
Sbjct: 356 ILKDINLSIEKGETVAFVGMSGGGKSTL-INLIPR----FYDVTSGQILIDGHNIKDFLT 410

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL- 220
            SL+ + G V QD++L+   TV E +            T EE +E A+M      IM L 
Sbjct: 411 GSLRNQIGLVQQDNILF-SDTVKENILLGRP-----TATDEEVVEAAKMANAHDFIMNLP 464

Query: 221 -GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            G     ++ VG    RG  +SGG+++R+SI +  L NP  L+LDE TS LD  +   I 
Sbjct: 465 QGY----DTEVGE---RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517

Query: 278 ATLRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEG 314
             L  L++  RT +   H    RL      DK+VV+  G
Sbjct: 518 EALDVLSK-DRTTLIVAH----RLSTITHADKIVVIENG 551

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271

 Score =  103 bits (260), Expect = 7e-25
 Identities = 63/232 (27%), Positives = 100/232 (43%), Gaps = 35/232 (15%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SS 168
           V VL G++  + PG++ A++GP+GSGK+T+  AL   L     GK+  +G    Q+    
Sbjct: 32  VQVLQGLTFTLYPGKVTALVGPNGSGKSTVA-ALLQNLYQPTGGKVLLDGEPLVQYDHHY 90

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL--G 221
           L  +   V Q+ +L+   +  E ++Y     L +  T EE    A        I     G
Sbjct: 91  LHTQVAAVGQEPLLF-GRSFRENIAYG----LTRTPTMEEITAVAMESGAHDFISGFPQG 145

Query: 222 LTRCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV-- 277
                ++ VG     G   SGG+R+ V++ + ++  P  L+LD  TS LD    Q  V  
Sbjct: 146 Y----DTEVGE---TGNQLSGGQRQAVALARALIRKPRLLILDNATSALD-AGNQLRVQR 197

Query: 278 ATLRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEGSPIYSGRAAQVMD 327
                     RTV+        +L        ++ L EGS    G   Q+M+
Sbjct: 198 LLYESPEWASRTVLLITQ----QLSLAERAHHILFLKEGSVCEQGTHLQLME 245

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  108 bits (272), Expect = 8e-25
 Identities = 50/230 (21%), Positives = 80/230 (34%), Gaps = 27/230 (11%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS------ 166
            S         +PG++L ++G +G GK+T L  LAG+ +    G+               
Sbjct: 90  NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQK-PNLGRFDDPPEWQEIIKYFR 148

Query: 167 -SSLKRKTGFVTQDDVL------YPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
            S L+     + +DD+       Y              +    KL  E+  E  +  I  
Sbjct: 149 GSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKI 208

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
           L L           + + +SGGE +R +IG   +      + DEP+S LD          
Sbjct: 209 LQLENVLKR----DIEK-LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQI 263

Query: 280 LRGLARGGRTVITTIHQPSSRLY---RMFDKVVVLSEGSPIYSGRAAQVM 326
           +R L    + VI   H     L     + D V ++  G P   G      
Sbjct: 264 IRSLLAPTKYVICVEH----DLSVLDYLSDFVCII-YGVPSVYGVVTLPA 308

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score =  105 bits (263), Expect = 1e-23
 Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 25/223 (11%)

Query: 108 KQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS 167
           K+T+   VLN   G     E+L M+G +G+GKTTL+  LAG L+    G+         S
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-PDEGQDIPKLNV--S 416

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN 227
              +K              TV +        ++  +    +       V+  L +    +
Sbjct: 417 MKPQKIAPKFPG-------TVRQLFFK----KIRGQFLNPQFQTD---VVKPLRIDDIID 462

Query: 228 SVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG- 286
             V     + +SGGE +RV+I   + +     L+DEP++ LDS         +R      
Sbjct: 463 QEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN 517

Query: 287 GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYF 329
            +T     H        + DKV+V  EG P  +  A       
Sbjct: 518 KKTAFIVEHDFIM-ATYLADKVIVF-EGIPSKNAHARAPESLL 558

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score =  107 bits (269), Expect = 2e-24
 Identities = 58/221 (26%), Positives = 90/221 (40%), Gaps = 39/221 (17%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-----QFSSSL 169
            L    G +K GE++ ++GP+G GKTT +  LAG       GKI ++       Q+    
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-PTEGKIEWDLTVAYKPQYIK-- 357

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
                            TV E LS         KL       +   ++  LG+    +  
Sbjct: 358 ------------ADYEGTVYELLSKI----DASKLNSNFYKTE---LLKPLGIIDLYDRE 398

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGR 288
           V       +SGGE +RV+I   +L +    LLDEP++ LD      +   +R L  +  +
Sbjct: 399 V-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEK 453

Query: 289 T--VITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           T  V+   H     +  + D+++V  EG P   GRA   M 
Sbjct: 454 TALVVE--HDVLM-IDYVSDRLMVF-EGEPGKYGRALPPMG 490

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 94.7 bits (236), Expect = 2e-20
 Identities = 50/218 (22%), Positives = 93/218 (42%), Gaps = 25/218 (11%)

Query: 114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK--------ITYNGRQF 165
           + +     +VK G ++ ++GP+G+GK+T +  LAG+L     G           + G + 
Sbjct: 35  AFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNEL 94

Query: 166 SSSL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
            +   K K G +    V+ P     + +  A   ++ + L + ++  + E V+  L L  
Sbjct: 95  QNYFEKLKNGEIRP--VVKPQYV--DLIPKAVKGKVIELLKKADETGKLEEVVKALELEN 150

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
                    +   +SGGE +RV+I   +L N +    DEP+S LD          +R L+
Sbjct: 151 VLER----EIQH-LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLS 205

Query: 285 RGGRTVITTIHQPSSRLY---RMFDKVVVLSEGSPIYS 319
             G++V+   H     L     + D + V+     +Y 
Sbjct: 206 EEGKSVLVVEH----DLAVLDYLSDIIHVVYGEPGVYG 239

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582

 Score =  105 bits (264), Expect = 7e-24
 Identities = 62/219 (28%), Positives = 115/219 (52%), Gaps = 41/219 (18%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNG---RQFS- 166
            L  ++  +  G+ +A++G SGSGK+T+ + +      +F     G I  +G   R+++ 
Sbjct: 358 ALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-----RFYDIDEGHILMDGHDLREYTL 412

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL- 220
           +SL+ +   V+Q+  L+ + TV   ++YA      ++ +RE+  E A M      I ++ 
Sbjct: 413 ASLRNQVALVSQNVHLF-NDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMD 467

Query: 221 -GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            GL    ++++G     G  +SGG+R+R++I + +L +   L+LDE TS LD+ + + I 
Sbjct: 468 NGL----DTIIGE---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQ 520

Query: 278 ATLRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEG 314
           A L  L +  RT +   H    RL      D++VV+ +G
Sbjct: 521 AALDELQK-NRTSLVIAH----RLSTIEQADEIVVVEDG 554

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582

 Score =  104 bits (262), Expect = 1e-23
 Identities = 66/219 (30%), Positives = 112/219 (51%), Gaps = 41/219 (18%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNG---RQFS- 166
            L+ VS  +  G+ +A++G SGSGK+T+          +F    SG I  +G   R +  
Sbjct: 358 ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFT-----RFYDVDSGSICLDGHDVRDYKL 412

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL- 220
           ++L+R    V+Q+  L+ + T+   ++YAA      + TRE+  + A        I  + 
Sbjct: 413 TNLRRHFALVSQNVHLF-NDTIANNIAYAAEG----EYTREQIEQAARQAHAMEFIENMP 467

Query: 221 -GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            GL    ++V+G     G  +SGG+R+RV+I + +L +   L+LDE TS LD+ + + I 
Sbjct: 468 QGL----DTVIGE---NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQ 520

Query: 278 ATLRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEG 314
           A L  L +  +TV+   H    RL      D+++V+ EG
Sbjct: 521 AALDELQK-NKTVLVIAH----RLSTIEQADEILVVDEG 554

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score =  100 bits (250), Expect = 5e-23
 Identities = 63/225 (28%), Positives = 107/225 (47%), Gaps = 46/225 (20%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSL-- 169
            V  L+ V+  ++ GE   +LGPSG+GKTT +  +AG L    +G++ ++ R  +S+   
Sbjct: 17  KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKL 75

Query: 170 -----KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLT 223
                 RK G V Q   LYP+LT  E +++        K    +++E+ A+++ +   L 
Sbjct: 76  IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLN 135

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                    P  R +SG +++RV++ + ++ +PS LLLDEP S LD        A +R  
Sbjct: 136 H-------FP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLD--------ARMRDS 178

Query: 284 ARGGRTVITTIHQPSSRL-----Y---------RMFDKVVVLSEG 314
           A   R ++  +     RL                + D+V VL +G
Sbjct: 179 A---RALVKEVQS---RLGVTLLVVSHDPADIFAIADRVGVLVKG 217

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  101 bits (254), Expect = 3e-22
 Identities = 65/217 (29%), Positives = 111/217 (51%), Gaps = 32/217 (14%)

Query: 113  VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SS 168
            + VL G+S  VK G+ LA++G SG GK+T++  L  R     +G +  +G   +Q +   
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKSTVV-QLLERFYDPMAGSVFLDGKEIKQLNVQW 1104

Query: 169  LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL--G 221
            L+ + G V+Q+ +L+   ++ E ++Y       + ++ EE +  A+       I  L   
Sbjct: 1105 LRAQLGIVSQEPILFD-CSIAENIAYG---DNSRVVSYEEIVRAAKEANIHQFIDSLPDK 1160

Query: 222  LTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
                 N+ VG    +G  +SGG+++R++I + ++  P  LLLDE TS LD+ + + +   
Sbjct: 1161 Y----NTRVGD---KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEA 1213

Query: 280  LRGLARGGRTVITTIHQPSSRLY--RMFDKVVVLSEG 314
            L   AR GRT I   H    RL   +  D +VV+  G
Sbjct: 1214 LDK-AREGRTCIVIAH----RLSTIQNADLIVVIQNG 1245

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284

 Score =  100 bits (250), Expect = 8e-22
 Identities = 66/222 (29%), Positives = 110/222 (49%), Gaps = 30/222 (13%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS---- 167
            V +L G++  VK G+ +A++G SG GK+T +  L  RL     G ++ +G+   +    
Sbjct: 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTV-QLMQRLYDPLDGMVSIDGQDIRTINVR 460

Query: 168 SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL-- 220
            L+   G V+Q+ VL+   T+ E + Y       + +T +E  +  +       IM+L  
Sbjct: 461 YLREIIGVVSQEPVLF-ATTIAENIRYGR-----EDVTMDEIEKAVKEANAYDFIMKLPH 514

Query: 221 GLTRCRNSVVGGPLFRGI--SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
                 +++VG    RG   SGG+++R++I + ++ NP  LLLDE TS LD+ +   + A
Sbjct: 515 QF----DTLVGE---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQA 567

Query: 279 TLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
            L   AR GRT I   H+ S+   R  D +     G  +  G
Sbjct: 568 ALDK-AREGRTTIVIAHRLST--VRNADVIAGFDGGVIVEQG 606

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 95.7 bits (239), Expect = 3e-22
 Identities = 58/233 (24%), Positives = 103/233 (44%), Gaps = 40/233 (17%)

Query: 116 LNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKR---- 171
           L+GVS  V  G++  ++GP+GSGK+TL+  + G L+    G++ +  +  ++  +     
Sbjct: 23  LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD-EGRVYFENKDITN-KEPAELY 80

Query: 172 KTGFV-T-QDDVLYPHLTVLE-----------TLSYAALLRLPKKLTREEKI-EQAEMVI 217
             G V T Q       +TVLE           +   +   +      +EE++ E+A  ++
Sbjct: 81  HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP--KEEEMVEKAFKIL 138

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
             L L+   +   G      +SGG+ K V IG+ ++ NP  +++DEP +G+    A  I 
Sbjct: 139 EFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMF------DKVVVLSEGSPIYSGRAAQ 324
             +  L   G T +   H       R+       D + V+  G  I  GR  +
Sbjct: 194 NHVLELKAKGITFLIIEH-------RLDIVLNYIDHLYVMFNGQIIAEGRGEE 239

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 90.6 bits (226), Expect = 1e-20
 Identities = 56/222 (25%), Positives = 111/222 (50%), Gaps = 19/222 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS---- 168
           +  + G+   V  G+++ ++G +G+GKTT L+A+AG +R +  GKI +NG+  ++     
Sbjct: 19  IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ-KGKIIFNGQDITNKPAHV 77

Query: 169 -LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEM--VIMELGLTRC 225
             +     V +   ++P LTV E L   A  R  K+  + +      +   + E      
Sbjct: 78  INRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKE------ 131

Query: 226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
           R   +GG L    SGGE++ ++IG+ ++  P  L++DEP+ GL       +   ++ + +
Sbjct: 132 RLKQLGGTL----SGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ 187

Query: 286 GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            G T++  + Q +    ++     VL  G  +  G+A++++D
Sbjct: 188 EGTTIL-LVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 89.6 bits (223), Expect = 2e-19
 Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 41/219 (18%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLK 170
            + LN ++  +K GE +A+LGPSGSGK+TLL  +AG +    SGKI ++ +  +      
Sbjct: 16  FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAG-IYKPTSGKIYFDEKDVTELPPKD 74

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLTRCRNSV 229
           R  G V Q+  LYPH+TV + +++   LR   +   ++K+ + A+M+ ++  L R     
Sbjct: 75  RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNR----- 129

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
              P    +SGG+++RV+I + ++  P  LLLDEP S LD        A LR      R 
Sbjct: 130 --YP--WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLD--------ALLRLEV---RA 174

Query: 290 VITTIHQPSSRL-----Y---------RMFDKVVVLSEG 314
            +  + +    L     Y          M D++ V+ EG
Sbjct: 175 ELKRLQK---ELGITTVYVTHDQAEALAMADRIAVIREG 210

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359

 Score = 87.3 bits (217), Expect = 1e-18
 Identities = 67/223 (30%), Positives = 102/223 (45%), Gaps = 49/223 (21%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLK 170
           V  ++GVS  VK GE +A+LGPSG GKTT L  LAG +    SG+I ++    +      
Sbjct: 16  VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAG-IYKPTSGEIYFDDVLVNDIPPKY 74

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLTRCRNSV 229
           R+ G V Q+  LYPH+TV E +++    R   K   E+++ + A      L +       
Sbjct: 75  REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARK----LLID------ 124

Query: 230 VGGPLF----RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR 285
               L       +SGG+++RV++ + ++  P  LL DEP S LD        A LR +  
Sbjct: 125 ---NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLD--------ANLRMIM- 172

Query: 286 GGRTVITTIHQPSSRL-----Y---------RMFDKVVVLSEG 314
             R  I  + Q    L     Y          M  ++ V ++G
Sbjct: 173 --RAEIKHLQQ---ELGITSVYVTHDQAEAMTMASRIAVFNQG 210

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 85.7 bits (213), Expect = 4e-18
 Identities = 65/229 (28%), Positives = 104/229 (45%), Gaps = 55/229 (24%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-----QFSS 167
           V+ +  +S  VK GE + +LGPSG GKTT L  +AG L     G+I    +     +   
Sbjct: 16  VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGI 74

Query: 168 SL---KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLT 223
            +    R    V Q   LYPH+TV + +++   LR   +   ++++ + AE+    LGLT
Sbjct: 75  FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL----LGLT 130

Query: 224 RCRNSVVGGPLF----RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
                     L     R +SGG+R+RV++G+ ++  P   L+DEP S LD        A 
Sbjct: 131 ---------ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLD--------AK 173

Query: 280 LRGLARGGRTVITTIHQPSSRL-----Y---------RMFDKVVVLSEG 314
           LR      R  +  + +   +L     Y          M D++ V++ G
Sbjct: 174 LRVRM---RAELKKLQR---QLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 85.8 bits (213), Expect = 4e-18
 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 41/219 (18%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLK 170
            + +N ++  +K GE L +LGPSG GKTT L  +AG L     G+I +  R  +      
Sbjct: 24  FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVTYLPPKD 82

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-AEMVIMELGLTRCRNSV 229
           R    V Q   ++PH+TV E +++   ++   K   ++++   AE++ +E  L R     
Sbjct: 83  RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR----- 137

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRT 289
              P    +SGG+R+RV++ + ++V P  LL+DEP S LD        A LR      R 
Sbjct: 138 --YP--AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD--------AKLRVAM---RA 182

Query: 290 VITTIHQPSSRL-----Y---------RMFDKVVVLSEG 314
            I  + Q   +L     Y          M D++ V++ G
Sbjct: 183 EIKKLQQ---KLKVTTIYVTHDQVEAMTMGDRIAVMNRG 218

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381

 Score = 83.0 bits (206), Expect = 4e-17
 Identities = 76/236 (32%), Positives = 109/236 (46%), Gaps = 59/236 (25%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLK 170
           V V   ++  +  GE +  +GPSG GK+TLL  +AG L    SG +    ++ +     +
Sbjct: 16  VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAG-LETITSGDLFIGEKRMNDTPPAE 74

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPK--KLTREEKIEQ-AEMVIMELGLTRCRN 227
           R  G V Q   LYPHL+V E +S+   L+L    K    +++ Q AE+    L L     
Sbjct: 75  RGVGMVFQSYALYPHLSVAENMSFG--LKLAGAKKEVINQRVNQVAEV----LQLA---- 124

Query: 228 SVVGGPLF----RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                 L     + +SGG+R+RV+IG+ ++  PS  LLDEP S LD        A LR  
Sbjct: 125 -----HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD--------AALRVQ 171

Query: 284 ARGGRTVITTIHQPSSRLYR--------------MFDKVVVLSEGSPIYSGRAAQV 325
               R  I+ +H+   RL R              + DK+VVL        GR AQV
Sbjct: 172 M---RIEISRLHK---RLGRTMIYVTHDQVEAMTLADKIVVLDA------GRVAQV 215

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390

 Score = 82.8 bits (205), Expect = 4e-17
 Identities = 55/219 (25%), Positives = 94/219 (42%), Gaps = 44/219 (20%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           +L  +S  + PG+ + +LG +GSGK+TLL+A   RL     G+I  +G  + S      +
Sbjct: 36  ILENISFSISPGQRVGLLGRTGSGKSTLLSAFL-RLL-NTEGEIQIDGVSWDSITLEQWR 93

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRL---PKKLTREEKIEQA-EMV-------IME 219
           +  G + Q   ++           +   R    P     +++I +  + V          
Sbjct: 94  KAFGVIPQKVFIF-----------SGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFP 142

Query: 220 LGLTRCRNSVV--GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
             L    + V+  GG +    S G ++ + + + +L     LLLDEP++ LD  T Q I 
Sbjct: 143 GKL----DFVLVDGGCVL---SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIR 195

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMF--DKVVVLSEG 314
            TL+  A    TVI        R+  M   D+ +V+ E 
Sbjct: 196 RTLKQ-AFADCTVILCEA----RIEAMLECDQFLVIEEN 229

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598

 Score = 82.6 bits (205), Expect = 1e-16
 Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 50/229 (21%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF----SGKITYNG---RQFS- 166
           VL  ++  +KPG+ +A++GP+GSGKTT++  L      +F     G+I  +G   R+   
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM-----RFYDVDRGQILVDGIDIRKIKR 424

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-----IMEL- 220
           SSL+   G V QD +L+   TV E L Y          T EE  E A++      I  L 
Sbjct: 425 SSLRSSIGIVLQDTILF-STTVKENLKYGNP-----GATDEEIKEAAKLTHSDHFIKHLP 478

Query: 221 -GLTRCRNSVVGGPLFRG--ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
            G      +V+      G  +S G+R+ ++I +  L NP  L+LDE TS +D+ T + I 
Sbjct: 479 EGY----ETVLTD---NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQ 531

Query: 278 ATLRGLARGGRT--VI----TTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           A +  L   G+T  +I     TI        +  D ++VL +G  +  G
Sbjct: 532 AAMWKL-MEGKTSIIIAHRLNTI--------KNADLIIVLRDGEIVEMG 571

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 81.2 bits (200), Expect = 5e-16
 Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 26/156 (16%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           +LN     +K      + GP+G GK+TL+ A+A                 F +  + +T 
Sbjct: 450 LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-----------GFPTQEECRTV 498

Query: 175 FVTQD-DVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP 233
           +V  D D  +   +VL+ +  +               E  +  ++E G T    ++    
Sbjct: 499 YVEHDIDGTHSDTSVLDFVFESG----------VGTKEAIKDKLIEFGFTDEMIAMPISA 548

Query: 234 LFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
           L    SGG + ++++ + +L N   LLLDEPT+ LD
Sbjct: 549 L----SGGWKMKLALARAVLRNADILLLDEPTNHLD 580

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 52.0 bits (124), Expect = 5e-07
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 206 REEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPT 265
           R    ++ E     LGL      +V     RG+SGG++ ++ +       P  ++LDEPT
Sbjct: 873 RPLTRKEIEEHCSMLGLD---PEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPT 929

Query: 266 SGLD 269
           + LD
Sbjct: 930 NYLD 933

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 77.7 bits (192), Expect = 2e-15
 Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 54/304 (17%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
           ++ TRT+  LN VS  V  G++  ++G SG+GK+TL+  +   L     G +  +G++ +
Sbjct: 35  HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNL-LERPTEGSVLVDGQELT 93

Query: 167 S-------SLKRKTGFVTQDDVLYPHLTVLETLSYA-ALLRLPKKLTREEKIEQAEMVIM 218
           +         +R+ G + Q   L    TV   ++    L   PK   +    E   +V  
Sbjct: 94  TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-- 151

Query: 219 ELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA 278
             GL    +S    P    +SGG+++RV+I + +  NP  LL D+ TS LD  T + I+ 
Sbjct: 152 --GLGDKHDSY---P--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILE 204

Query: 279 TLRGL-ARGGRTVITTIHQPSSRLYRM------FDKVVVLSEGSPIYSGRAAQVMDYFGS 331
            L+ +  R G T++   H+       M       D V V+S G  I       V + F  
Sbjct: 205 LLKDINRRLGLTILLITHE-------MDVVKRICDCVAVISNGELIEQDT---VSEVFSH 254

Query: 332 ---------IGYVPGFNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQS 382
                    I      ++  P D+   L      D     +LEF G         +    
Sbjct: 255 PKTPLAQKFIQSTLHLDI--PEDYQERLQAEPFTDCVPMLRLEFTG--------QSVDAP 304

Query: 383 LISS 386
           L+S 
Sbjct: 305 LLSE 308

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250

 Score = 74.1 bits (183), Expect = 7e-15
 Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 75/245 (30%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF---SGKITYNGRQFSSSLKR 171
           +L GV+ +V  GE+ A++GP+G+GK+TL   LAG    ++    G+I  +G         
Sbjct: 18  ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD--PEYTVERGEILLDGE-------- 67

Query: 172 KTGFVTQDDVL-----------------YPHLTVLET--LSYAALLRLPKKLTREEKI-- 210
                   ++L                 YP    +E   ++ A  LRL  +     ++  
Sbjct: 68  --------NILELSPDERARKGLFLAFQYP----VEVPGVTIANFLRLALQAKLGREVGV 115

Query: 211 --------EQAEMVIMELG-LTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLL 261
                   +  E++  +   L+R  N         G SGGE+KR  I Q +++ P+  +L
Sbjct: 116 AEFWTKVKKALELLDWDESYLSRYLNE--------GFSGGEKKRNEILQLLVLEPTYAVL 167

Query: 262 DEPTSGLDSTTAQRIVA----TLRGLARGGRTVITTIHQPSSRL--YRMFDKVVVLSEGS 315
           DE  SGLD   A ++VA     +RG   G   ++ T +Q   R+  Y   DKV V+ +G 
Sbjct: 168 DETDSGLD-IDALKVVARGVNAMRGPNFG--ALVITHYQ---RILNYIQPDKVHVMMDGR 221

Query: 316 PIYSG 320
            + +G
Sbjct: 222 VVATG 226

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587

 Score = 73.0 bits (180), Expect = 1e-13
 Identities = 71/219 (32%), Positives = 106/219 (48%), Gaps = 42/219 (19%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS-SSLK 170
           VL+GV+  VKPG L+A+LG +GSGK+TL+  L  RL     G++  +    R      L+
Sbjct: 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLM-NLIPRLIDPERGRVEVDELDVRTVKLKDLR 416

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE-----KIEQAEMVIMEL--GLT 223
                V Q+ VL+   T+ E L +       +  T +E     KI Q    I+ L  G  
Sbjct: 417 GHISAVPQETVLF-SGTIKENLKWGR-----EDATDDEIVEAAKIAQIHDFIISLPEGY- 469

Query: 224 RCRNSVV--GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
              +S V  GG   R  SGG+++R+SI + ++  P  L+LD+ TS +D  T +RI+  L+
Sbjct: 470 ---DSRVERGG---RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523

Query: 282 GLARGGRTV------ITTIHQPSSRLYRMFDKVVVLSEG 314
              + G T       I T            DK++VL EG
Sbjct: 524 RYTK-GCTTFIITQKIPTALLA--------DKILVLHEG 553

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 56/229 (24%), Positives = 93/229 (40%), Gaps = 48/229 (20%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR--- 163
           N       VL  ++  ++ G+LLA+ G +G+GKT+LL  + G L     GKI ++GR   
Sbjct: 45  NFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGRISF 103

Query: 164 --Q----FSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLR----LPKK-LTREEKIEQ 212
             Q       ++K     V+ D+  Y        +    L        +K          
Sbjct: 104 CSQNSWIMPGTIKENIIGVSYDEYRY-----RSVIKACQLEEDISKFAEKDNI------- 151

Query: 213 AEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT 272
              V+ E G+T              +SGG+R R+S+ + +  +    LLD P   LD  T
Sbjct: 152 ---VLGEGGIT--------------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194

Query: 273 AQRIVAT-LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
            + I  + +  L    +T I    +      +  DK+++L EGS  + G
Sbjct: 195 EKEIFESCVCKLMA-NKTRILVTSKME--HLKKADKILILHEGSSYFYG 240

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229

 Score = 67.2 bits (165), Expect = 9e-13
 Identities = 55/222 (24%), Positives = 91/222 (40%), Gaps = 49/222 (22%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-----Q----F 165
           VL  ++  ++ G+LLA+ G +G+GKT+LL  + G L     GKI ++GR     Q     
Sbjct: 23  VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-PSEGKIKHSGRISFCSQFSWIM 81

Query: 166 SSSLKRKTGFVTQ-DDVLYPHLTVLETLSYAALLR----LPKK-LTREEKIEQAEMVIME 219
             ++K    F    D+  Y        +    L        +K             V+ E
Sbjct: 82  PGTIKENIIFGVSYDEYRY-----RSVIKACQLEEDISKFAEKDNI----------VLGE 126

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
            G+T              +SGG+R R+S+ + +  +    LLD P   LD  T + I  +
Sbjct: 127 GGIT--------------LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFES 172

Query: 280 -LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
            +  L    +T I    +      +  DK+++L EGS  + G
Sbjct: 173 CVCKLMA-NKTRILVTSKME--HLKKADKILILHEGSSYFYG 211

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 3e-12
 Identities = 74/498 (14%), Positives = 149/498 (29%), Gaps = 189/498 (37%)

Query: 53  DGISVQIQEPPLV-IRFSILRESLHPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTR 111
             I  + ++P ++   +   R+ L+     F    Y++            S  +P  + R
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK--YNV------------SRLQPYLKLR 141

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTL--LTALAGRLRGKFSGKITYNGRQFSSSL 169
             ++L      ++P + + + G  GSGKT +     L+ +++ K   KI      F  +L
Sbjct: 142 Q-ALLE-----LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI------FWLNL 189

Query: 170 KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSV 229
           K      + + VL      L+ L Y    ++    T   + + +  + + +   +     
Sbjct: 190 KNCN---SPETVLEM----LQKLLY----QIDPNWT--SRSDHSSNIKLRIHSIQ----- 231

Query: 230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLL-LDEPTSGLDSTTAQRIVATLRGLARGGR 288
                          R  +  +   N  CLL L               V           
Sbjct: 232 ------------AELRRLLKSKPYEN--CLLVLLN-------------VQ---------- 254

Query: 289 TVITTIHQPSSRLYRMFD---KVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGFNLLNPAD 345
                    +++ +  F+   K+++ +        R  QV D+  +              
Sbjct: 255 ---------NAKAWNAFNLSCKILLTT--------RFKQVTDFLSAATTT---------- 287

Query: 346 FLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQS--LISSYKKNLHPALMAEIQQNV 403
                                H  L+HH       +   L+  Y       L  E+    
Sbjct: 288 ---------------------HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT-- 324

Query: 404 GDPIAS---GKSSRKNCDNEWTASW--W-----EQFKVLLKRGLQE------RKHESYSY 447
            +P       +S R     +  A+W  W     ++   +++  L        RK   +  
Sbjct: 325 TNPRRLSIIAESIR-----DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM--FDR 377

Query: 448 LRIFQVLSVSI----LSGLLWWHSDRSHIQDQVGLLFFFSIFWGFFPLNNAIFVFPQERA 503
           L +F   S  I    LS L+W+   +S +   V  L                     + +
Sbjct: 378 LSVFPP-SAHIPTILLS-LIWFDVIKSDVMVVVNKL--------------------HKYS 415

Query: 504 MLIKERSSGMYRLSSYYF 521
           ++ K+       + S Y 
Sbjct: 416 LVEKQPKESTISIPSIYL 433

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 6e-06
 Identities = 63/467 (13%), Positives = 120/467 (25%), Gaps = 164/467 (35%)

Query: 288 RTVITT------IHQPS--SRLYRMFDKVVVLSEGSPIYSGRAAQVM--DYFGSIGYVPG 337
           +++++       I      S   R+F    +LS+   +      +V+  +Y         
Sbjct: 43  KSILSKEEIDHIIMSKDAVSGTLRLFW--TLLSKQEEMVQKFVEEVLRINY--------- 91

Query: 338 FNLLNPADFLLDLANGIAPDVKQDDQLEFHGRLEHHDDQNATKQSLISSYKKNLHPALMA 397
                   FL+                     ++    Q +    +    +  L+     
Sbjct: 92  -------KFLMS-------------------PIKTEQRQPSMMTRMYIEQRDRLY----- 120

Query: 398 EIQQNVGDPIASGKSSRKNCDNEWTASWWEQFKVLLKRGLQERKHESYSYLRIF------ 451
               N     A    SR            + +   L++ L E +      + I       
Sbjct: 121 ----NDNQVFAKYNVSRL-----------QPYLK-LRQALLELRPA--KNVLIDGVLGSG 162

Query: 452 -QVLSVSILSGLLWWHSDRSHIQDQVGLLFFFSIFW---G--------FFPLNNAIFVFP 499
              +++ +           S+   +V     F IFW               L   ++   
Sbjct: 163 KTWVALDVC---------LSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 500 QERAMLIKERSSGMYRLSS--YYFARMVGDLPME---LVL----------------PTIF 538
                     S+   R+ S      R++   P E   LVL                  + 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 539 IT----VAYWMGGLK---PSLITFLLTLSIILFNVLVAQSLGLLLGAIIMDVKQATALAS 591
            T    V  ++        SL    +TL+         +   LLL  +    +       
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLT-------PDEVKSLLLKYLDCRPQDLPREVL 323

Query: 592 VTM-LVFLMAGGYYIQHMSPFIAWLKYISFSHYCYKLLVGVQYSAN--------EVYACG 642
            T      +        ++ +  W         C KL   ++ S N        +++   
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHV-----NCDKLTTIIESSLNVLEPAEYRKMF--- 375

Query: 643 SGLHCSVMEFPA-----IKYLGV---DNKLIDVAALTMMLVGYRLLA 681
                SV  FP         L +   D    DV  +   L  Y L+ 
Sbjct: 376 --DRLSV--FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 56/224 (25%), Positives = 91/224 (40%), Gaps = 51/224 (22%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR-----Q----F 165
            LNG++  +  G L+A++G  G GK++LL+AL   +  K  G +   G      Q     
Sbjct: 20  TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-KVEGHVAIKGSVAYVPQQAWIQ 78

Query: 166 SSSLKRKTGFVTQ-DDVLYPHLTVLETLSYAALLR----LPKK-LTREEKIEQAEMVIME 219
           + SL+    F  Q ++  Y        +   ALL     LP    T           I E
Sbjct: 79  NDSLRENILFGCQLEEPYY-----RSVIQACALLPDLEILPSGDRT----------EIGE 123

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRI--- 276
            G+               +SGG+++RVS+ + +  N    L D+P S +D+   + I   
Sbjct: 124 KGVN--------------LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEN 169

Query: 277 VATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSG 320
           V   +G+ +  +T I   H  S       D ++V+S G     G
Sbjct: 170 VIGPKGMLK-NKTRILVTHSMS--YLPQVDVIIVMSGGKISEMG 210

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 202 KKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI---SGGERKRV------SIGQEM 252
            ++  E    +   V++     + R  VV     R +   SGGER  +      ++   +
Sbjct: 210 SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL 269

Query: 253 LVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL 311
               S L+LDEPT  LD    ++++  +    +    VI   H     L    D V+ +
Sbjct: 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHVIRI 326

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148

 Score = 51.7 bits (124), Expect = 5e-08
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 239 SGGERKRV------SIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVIT 292
           SGGER  +      ++   +    S L+LDEPT  LD    ++++  +    +    VI 
Sbjct: 59  SGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVIL 118

Query: 293 TIH 295
             H
Sbjct: 119 VSH 121

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 35/90 (38%), Positives = 47/90 (52%), Gaps = 12/90 (13%)

Query: 237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA----TLRGLARGGRTVIT 292
           G SGGE+KR  I Q  ++ P   +LDE  SGLD   A ++VA    +LR   R    +I 
Sbjct: 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLD-IDALKVVADGVNSLRDGKRS--FIIV 220

Query: 293 TIHQPSSRL--YRMFDKVVVLSEGSPIYSG 320
           T +Q   R+  Y   D V VL +G  + SG
Sbjct: 221 THYQ---RILDYIKPDYVHVLYQGRIVKSG 247

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267

 Score = 48.7 bits (117), Expect = 3e-06
 Identities = 22/52 (42%), Positives = 33/52 (63%), Gaps = 5/52 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKF---SGKITYNGR 163
           +L G+S  V PGE+ A++GP+GSGK+TL   LAG  R  +    G + + G+
Sbjct: 35  ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAG--REDYEVTGGTVEFKGK 84

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 19/137 (13%)

Query: 186 LTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKR 245
           + +++     A        +  E  +  E+ +                    +SGGE+  
Sbjct: 238 VPLIQKYLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLT---------IDNLSGGEQIA 288

Query: 246 VSIG-------QEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS 298
           V++          +     C++LDEPT  LD     ++    R +    + +I T H   
Sbjct: 289 VALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT-HHRE 347

Query: 299 SRLYRMFDKVVVLSEGS 315
             L  + D ++ + +  
Sbjct: 348 --LEDVADVIINVKKDG 362

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLR 151
           GM  P  L+ + G   +GKTTL  ALA  LR
Sbjct: 1   GMQTP-ALIIVTGHPATGKTTLSQALATGLR 30

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 19/113 (16%)

Query: 189 LETLSYAALLRL----PKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERK 244
           LE +       L      +   +   E+   +I + G+ R           RG+SGGER 
Sbjct: 236 LEAVLKRTKAYLDILTNGRFDIDFDDEKGGFIIKDWGIER---PA------RGLSGGERA 286

Query: 245 RVSIG-----QEMLVNP-SCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
            +SI       E+         +DE  S LD+   ++I + L+ L R  + ++
Sbjct: 287 LISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	691
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	3e-41
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	2e-40
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-39
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	2e-38
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	4e-38
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	3e-37
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	3e-37
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	9e-37
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-35
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	1e-35
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	9e-35
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	3e-34
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	2e-33
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-33
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	9e-33
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	2e-28
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	3e-28
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	4e-28
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	6e-28
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	1e-23
g1ii8.1	369	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	1e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	3e-09
g1f2t.1	292	c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio	0.003
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	9e-08
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	1e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	4e-04
d1kgda_	178	c.37.1.1 (A:) Guanylate kinase-like domain of Cask	4e-04
d1w1wa_	427	c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac	0.001
d1lvga_	190	c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu	0.001
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	0.002
d1gkya_	186	c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac	0.003
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	0.003
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.004

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  148 bits (374), Expect = 3e-41
 Identities = 61/224 (27%), Positives = 105/224 (46%), Gaps = 13/224 (5%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
            K+    + +N ++  +K GE L +LGPSG GKTT L  +AG L     G+I +  R  +
Sbjct: 13  TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAG-LEEPTEGRIYFGDRDVT 71

Query: 167 --SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
                 R    V Q   ++PH+TV E +++   ++   K  ++E  ++       L +  
Sbjct: 72  YLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEE 128

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             N          +SGG+R+RV++ + ++V P  LL+DEP S LD+     + A ++ L 
Sbjct: 129 LLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQ 183

Query: 285 -RGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            +   T I   H        M D++ V++ G  +  G   +V  
Sbjct: 184 QKLKVTTIYVTHDQVE-AMTMGDRIAVMNRGQLLQIGSPTEVYL 226

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  146 bits (369), Expect = 2e-40
 Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 18/221 (8%)

Query: 111 RTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG-------- 162
             +  L  V+  +K GE ++++GPSGSGK+T+L  +   L     G++  +         
Sbjct: 16  EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGC-LDKPTEGEVYIDNIKTNDLDD 74

Query: 163 RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
            + +   + K GFV Q   L P LT LE +    + +    ++ EE+ ++A   +    L
Sbjct: 75  DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134

Query: 223 T-RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
             R  N          +SGG+++RV+I + +  NP  +L D+PT  LDS T ++I+  L+
Sbjct: 135 EERFANHKPNQ-----LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189

Query: 282 GLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR 321
            L    G+TV+   H  +  + R  ++++ L +G      +
Sbjct: 190 KLNEEDGKTVVVVTHDIN--VARFGERIIYLKDGEVEREEK 228

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  144 bits (365), Expect = 2e-39
 Identities = 50/213 (23%), Positives = 95/213 (44%), Gaps = 17/213 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           VL  ++  ++ GE+LA+ G +GSGKT+LL  + G L     G I ++GR           
Sbjct: 51  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS-EGIIKHSGR---------VS 100

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
           F +Q   + P  T+ E + +        +   +  ++  ++           N+V+G   
Sbjct: 101 FCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLGEG- 155

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTI 294
              +SGG+R R+S+ + +  +    LLD P   LD  T +++  +        +T I   
Sbjct: 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 215

Query: 295 HQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            +      R  DK+++L +GS  + G  +++  
Sbjct: 216 SKMEH--LRKADKILILHQGSSYFYGTFSELQS 246

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score =  140 bits (355), Expect = 2e-38
 Identities = 63/238 (26%), Positives = 107/238 (44%), Gaps = 25/238 (10%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
           +K+     VL GVS   + G++++++G SGSGK+T L  +   L     G I  NG+  +
Sbjct: 9   HKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINF-LEKPSEGAIIVNGQNIN 67

Query: 167 S-----------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEK 209
                              L+ +   V Q   L+ H+TVLE +  A +      L++ + 
Sbjct: 68  LVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDA 125

Query: 210 IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD 269
            E+A   + ++G+           L    SGG+++RVSI + + + P  LL DEPTS LD
Sbjct: 126 RERALKYLAKVGIDERAQGKYPVHL----SGGQQQRVSIARALAMEPDVLLFDEPTSALD 181

Query: 270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
                 ++  ++ LA  G+T++   H+       +   V+ L +G     G   QV  
Sbjct: 182 PELVGEVLRIMQQLAEEGKTMVVVTHEMGF-ARHVSSHVIFLHQGKIEEEGDPEQVFG 238

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  140 bits (353), Expect = 4e-38
 Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 22/230 (9%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSS---- 168
              L+GVS  V  G++  ++GP+GSGK+TL+  + G L+    G++ +  +  ++     
Sbjct: 17  FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-ADEGRVYFENKDITNKEPAE 75

Query: 169 -LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLT----------REEKIEQAEMVI 217
                     Q       +TVLE L    +      L            EE +E+A  ++
Sbjct: 76  LYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 135

Query: 218 MELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIV 277
             L L+   +   G      +SGG+ K V IG+ ++ NP  +++DEP +G+    A  I 
Sbjct: 136 EFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 190

Query: 278 ATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
             +  L   G T +   H+    +    D + V+  G  I  GR  + + 
Sbjct: 191 NHVLELKAKGITFLIIEHRLDI-VLNYIDHLYVMFNGQIIAEGRGEEEIK 239

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score =  137 bits (345), Expect = 3e-37
 Identities = 51/228 (22%), Positives = 108/228 (47%), Gaps = 13/228 (5%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQF- 165
            K+     +L G+S  ++ GE+  ++GP+G+GKTT L  ++  ++   SG +T  G+   
Sbjct: 9   RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-PSSGIVTVFGKNVV 67

Query: 166 --SSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLT 223
                +++   ++ ++   Y ++  +E L + A        +  E  E  E      GL 
Sbjct: 68  EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLG 124

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                 V        S G  +++ I + ++VNP   +LDEPTSGLD   A+ +   L+  
Sbjct: 125 EKIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQA 179

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGS 331
           ++ G T++ + H     +  + D++ ++  G+ + +G   ++ + + +
Sbjct: 180 SQEGLTILVSSHNMLE-VEFLCDRIALIHNGTIVETGTVEELKERYKA 226

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score =  137 bits (347), Expect = 3e-37
 Identities = 60/224 (26%), Positives = 103/224 (45%), Gaps = 16/224 (7%)

Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG---RQFS 166
                +L  ++  ++ GE +A +G SG GK+TL+  +        SG+I  +G   + F 
Sbjct: 28  DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT-SGQILIDGHNIKDFL 86

Query: 167 SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL--GLTR 224
           +   R    + Q D +    TV E +         +++    K+  A   IM L  G   
Sbjct: 87  TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY-- 144

Query: 225 CRNSVVG-GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
             ++ VG       +SGG+++R+SI +  L NP  L+LDE TS LD  +   I   L  L
Sbjct: 145 --DTEVGERG--VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL 200

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           ++  RT +   H+ S+      DK+VV+  G  + +G   +++ 
Sbjct: 201 SK-DRTTLIVAHRLST--ITHADKIVVIENGHIVETGTHRELIA 241

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score =  136 bits (343), Expect = 9e-37
 Identities = 56/225 (24%), Positives = 108/225 (48%), Gaps = 19/225 (8%)

Query: 110 TRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--- 166
            R V  L  ++  +  G+ +A++G SGSGK+T+ + +  R      G I  +G       
Sbjct: 25  GREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT-RFYDIDEGHILMDGHDLREYT 83

Query: 167 -SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMV-IMEL--GL 222
            +SL+ +   V+Q+  L+                  ++ +RE+  E A M   M+    +
Sbjct: 84  LASLRNQVALVSQNVHLFNDTVANNIA-----YARTEEYSREQIEEAARMAYAMDFINKM 138

Query: 223 TRCRNSVVG-GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLR 281
               ++++G       +SGG+R+R++I + +L +   L+LDE TS LD+ + + I A L 
Sbjct: 139 DNGLDTIIGENG--VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 196

Query: 282 GLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVM 326
            L +  RT +   H+ S       D++VV+ +G  +  G  ++++
Sbjct: 197 ELQK-NRTSLVIAHRLS--TIEQADEIVVVEDGIIVERGTHSELL 238

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score =  132 bits (333), Expect = 1e-35
 Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 18/229 (7%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
           ++ TRT+  LN VS  V  G++  ++G SG+GK+TL+  +    R    G +  +G++ +
Sbjct: 12  HQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-PTEGSVLVDGQELT 70

Query: 167 S-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIME 219
           +         +R+ G + Q   L    TV   ++    L       ++E   +   ++  
Sbjct: 71  TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSL 127

Query: 220 LGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVAT 279
           +GL    +S         +SGG+++RV+I + +  NP  LL DE TS LD  T + I+  
Sbjct: 128 VGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILEL 182

Query: 280 LRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           L+ + R  G T++   H+    + R+ D V V+S G  I     ++V  
Sbjct: 183 LKDINRRLGLTILLITHEMDV-VKRICDCVAVISNGELIEQDTVSEVFS 230

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score =  132 bits (333), Expect = 1e-35
 Identities = 59/217 (27%), Positives = 115/217 (52%), Gaps = 12/217 (5%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS----SSLK 170
           +L+ ++  +K GE++ ++G SGSGK+TL   +      + +G++  +G   +    + L+
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE-NGQVLIDGHDLALADPNWLR 76

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
           R+ G V QD+VL  + ++++ +S A      +K+    K+  A   I EL          
Sbjct: 77  RQVGVVLQDNVL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGE 135

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
            G    G+SGG+R+R++I + ++ NP  L+ DE TS LD  +   I+  +  + + GRTV
Sbjct: 136 QG---AGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTV 191

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           I   H+ S    +  D+++V+ +G  +  G+  +++ 
Sbjct: 192 IIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score =  130 bits (327), Expect = 9e-35
 Identities = 48/225 (21%), Positives = 99/225 (44%), Gaps = 13/225 (5%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGK----FSGKITYNG 162
           +     +  + G+   V  G+++ ++G +G+GKTT L+A+AG +R +             
Sbjct: 13  HVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN 72

Query: 163 RQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGL 222
           +      +     V +   ++P LTV E L   A  R  K+  + +      +      L
Sbjct: 73  KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLF---PRL 129

Query: 223 TRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRG 282
                 + G      +SGGE++ ++IG+ ++  P  L++DEP+ GL       +   ++ 
Sbjct: 130 KERLKQLGGT-----LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQK 184

Query: 283 LARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           + + G T++         L ++     VL  G  +  G+A++++D
Sbjct: 185 INQEGTTILLVEQNALGAL-KVAHYGYVLETGQIVLEGKASELLD 228

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 3e-34
 Identities = 53/220 (24%), Positives = 104/220 (47%), Gaps = 11/220 (5%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS----SS 168
           V VL G++  ++PGE+ A++GP+GSGK+T+   L    +    G++  +G+         
Sbjct: 27  VLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT-GGQLLLDGKPLPQYEHRY 85

Query: 169 LKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNS 228
           L R+   V Q+  ++   ++ E ++Y    + P          ++       GL +  ++
Sbjct: 86  LHRQVAAVGQEPQVFGR-SLQENIAYGLTQK-PTMEEITAAAVKSGAHSFISGLPQGYDT 143

Query: 229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGG 287
            V     + +SGG+R+ V++ + ++  P  L+LD+ TS LD+ +  ++   L     R  
Sbjct: 144 EVDEAGSQ-LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYS 202

Query: 288 RTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           R+V+      S  L    D ++ L  G+    G   Q+M+
Sbjct: 203 RSVLLITQHLS--LVEQADHILFLEGGAIREGGTHQQLME 240

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score =  125 bits (315), Expect = 2e-33
 Identities = 45/200 (22%), Positives = 93/200 (46%), Gaps = 19/200 (9%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTG 174
           VL  ++  ++ G ++   GP+G GKTTLL  ++  L+    G+I YNG   +  +K K  
Sbjct: 16  VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-PLKGEIIYNGVPITK-VKGKIF 73

Query: 175 FVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPL 234
           F+ ++ ++   ++V + L   A L    K+ + E ++  E V     +   +  +     
Sbjct: 74  FLPEEIIVPRKISVEDYLKAVASLY-GVKVNKNEIMDALESV----EVLDLKKKL----- 123

Query: 235 FRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITT 293
              +S G  +RV +   +LVN    +LD+P   +D  +  +++ ++  + +  G  +I++
Sbjct: 124 -GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISS 182

Query: 294 IHQPSSRLYRMFDKVVVLSE 313
             + S       D    L +
Sbjct: 183 REELS-----YCDVNENLHK 197

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score =  124 bits (314), Expect = 5e-33
 Identities = 54/217 (24%), Positives = 98/217 (45%), Gaps = 11/217 (5%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
           +L  +S   +P  ++A  GPSG GK+T+ + L    +   +G+IT +G+   +    + +
Sbjct: 17  ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT-AGEITIDGQPIDNISLENWR 75

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
            + GFV+QD  +                   + L +   +  A   +  +          
Sbjct: 76  SQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGE 135

Query: 231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTV 290
            G     ISGG+R+R++I +  L NP  L+LDE T+ LDS +   +   L  L + GRT 
Sbjct: 136 RG---VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTT 191

Query: 291 ITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           +   H+ S+      DK+  + +G    SG+  +++ 
Sbjct: 192 LVIAHRLST--IVDADKIYFIEKGQITGSGKHNELVA 226

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (312), Expect = 9e-33
 Identities = 55/224 (24%), Positives = 89/224 (39%), Gaps = 27/224 (12%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS----SLK 170
            L  +SG V+ GE+L ++GP+G+GK+TLL  +AG   G   G I + G+   +     L 
Sbjct: 14  RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG--KGSIQFAGQPLEAWSATKLA 71

Query: 171 RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV 230
               +++Q         V   L+             + + E    V   L L        
Sbjct: 72  LHRAYLSQQQTPPFATPVWHYLTL--------HQHDKTRTELLNDVAGALALDDKLGRST 123

Query: 231 GGPLFRGISGGERKRVSIGQEML-------VNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
                  +SGGE +RV +   +L            LLLDEP + LD      +   L  L
Sbjct: 124 N-----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL 178

Query: 284 ARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            + G  ++ + H  +    R   +  +L  G  + SGR  +V+ 
Sbjct: 179 CQQGLAIVMSSHDLNH-TLRHAHRAWLLKGGKMLASGRREEVLT 221

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score =  112 bits (281), Expect = 2e-28
 Identities = 73/224 (32%), Positives = 108/224 (48%), Gaps = 19/224 (8%)

Query: 113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRK 172
           V+ +  +S  VK GE + +LGPSG GKTT L  +AG L     G+I    +  +   K  
Sbjct: 16  VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAG-LEEPSRGQIYIGDKLVADPEKGI 74

Query: 173 --------TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
                      V Q   LYPH+TV + +++   LR   K+ R+E  ++   V   LGLT 
Sbjct: 75  FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTE 131

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             N        R +SGG+R+RV++G+ ++  P   L+DEP S LD+    R+ A L+ L 
Sbjct: 132 LLNRKP-----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQ 186

Query: 285 RG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
           R  G T I   H        M D++ V++ G     G   +V D
Sbjct: 187 RQLGVTTIYVTHDQVE-AMTMGDRIAVMNRGVLQQVGSPDEVYD 229

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 3e-28
 Identities = 68/225 (30%), Positives = 108/225 (48%), Gaps = 15/225 (6%)

Query: 107 NKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS 166
            K    V V   ++  +  GE +  +GPSG GK+TLL  +AG      SG +    ++ +
Sbjct: 7   TKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-ITSGDLFIGEKRMN 65

Query: 167 --SSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQA-EMVIMELGLT 223
                +R  G V Q   LYPHL+V E +S+   L   KK    +++ Q  E++ +   L 
Sbjct: 66  DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLD 125

Query: 224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL 283
           R           + +SGG+R+RV+IG+ ++  PS  LLDEP S LD+    ++   +  L
Sbjct: 126 R---------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRL 176

Query: 284 ARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
            +  GRT+I   H        + DK+VVL  G     G+  ++  
Sbjct: 177 HKRLGRTMIYVTHDQVE-AMTLADKIVVLDAGRVAQVGKPLELYH 220

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score =  110 bits (277), Expect = 4e-28
 Identities = 65/224 (29%), Positives = 114/224 (50%), Gaps = 18/224 (8%)

Query: 112 TVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLK- 170
            V  L+ V+  ++ GE   +LGPSG+GKTT +  +AG L    +G++ ++ R  +S+ K 
Sbjct: 17  KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAG-LDVPSTGELYFDDRLVASNGKL 75

Query: 171 ------RKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR 224
                 RK G V Q   LYP+LT  E +++        K    +++E+   V   L +  
Sbjct: 76  IVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE---VAKILDIHH 132

Query: 225 CRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA 284
             N        R +SG +++RV++ + ++ +PS LLLDEP S LD+       A ++ + 
Sbjct: 133 VLNHFP-----RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQ 187

Query: 285 RG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
              G T++   H P+  ++ + D+V VL +G  +  G+   + D
Sbjct: 188 SRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGKPEDLYD 230

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score =  110 bits (275), Expect = 6e-28
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 16/216 (7%)

Query: 115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--SLKRK 172
            L+ +S  V+ GE   +LGP+G+GKT  L  +AG      SG+I  +G+  +     K  
Sbjct: 15  SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAG-FHVPDSGRILLDGKDVTDLSPEKHD 73

Query: 173 TGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGG 232
             FV Q+  L+PH+ V +       +R+ K    +  ++ A  + +E  L R   +    
Sbjct: 74  IAFVYQNYSLFPHMNVKKN--LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT---- 127

Query: 233 PLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLA-RGGRTVI 291
                +SGGE++RV++ + ++ NP  LLLDEP S LD  T +     L  L  +   TV+
Sbjct: 128 -----LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182

Query: 292 TTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD 327
              H  +     M D++ V+ +G  I  G+  ++ +
Sbjct: 183 HITHDQTEAR-IMADRIAVVMDGKLIQVGKPEEIFE 217

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 98.2 bits (244), Expect = 1e-23
 Identities = 54/207 (26%), Positives = 99/207 (47%), Gaps = 15/207 (7%)

Query: 124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFS--SSLKRKTGFVTQDDV 181
              +   +LGP+G+GK+  L  +AG ++    G++  NG   +     +R  GFV QD  
Sbjct: 22  MGRDYCVLLGPTGAGKSVFLELIAGIVK-PDRGEVRLNGADITPLPPERRGIGFVPQDYA 80

Query: 182 LYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGG 241
           L+PHL+V   ++Y       + + R E+  +   +  +LG+    +          +SGG
Sbjct: 81  LFPHLSVYRNIAYG-----LRNVERVERDRRVREMAEKLGIAHLLDRKP-----ARLSGG 130

Query: 242 ERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSR 300
           ER+RV++ + +++ P  LLLDEP S +D  T   ++  LR + R     ++   H     
Sbjct: 131 ERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIE- 189

Query: 301 LYRMFDKVVVLSEGSPIYSGRAAQVMD 327
              + D+V V+  G  +  G+  ++  
Sbjct: 190 AAMLADEVAVMLNGRIVEKGKLKELFS 216

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 50.4 bits (119), Expect = 9e-08
 Identities = 18/186 (9%), Positives = 43/186 (23%), Gaps = 33/186 (17%)

Query: 129 LAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTV 188
           + + G  G GKTTL+  +  RL  + +        +   + KR              +  
Sbjct: 3   IIITGEPGVGKTTLVKKIVERLGKR-AIGFWTEEVRDPETKKRT----------GFRIIT 51

Query: 189 LETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSI 248
            E        +                                               + 
Sbjct: 52  TEGKKKIFSSKFFTSKKLVGSYGVNVQYFE-------------------ELAIPILERAY 92

Query: 249 GQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKV 308
            +        +++DE       +  +      + +      V+ TI      ++ +  ++
Sbjct: 93  REAKKDRRKVIIIDEIGKMELFSK-KFRDLVRQIMHDPNVNVVATIPIRD--VHPLVKEI 149

Query: 309 VVLSEG 314
             L   
Sbjct: 150 RRLPGA 155

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 1e-04
 Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 6/169 (3%)

Query: 131 MLGPSGSGKTTLLTALAGRLR---GKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLT 187
           + GP G GKTTL+   +  L+       G  T   RQ    +      ++        + 
Sbjct: 6   LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65

Query: 188 VLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRN-SVVGGPLFRGISGGERKRV 246
           +               +      + A  V+     +      V        +    +  +
Sbjct: 66  LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125

Query: 247 SIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIH 295
              ++ L  P  ++L              +V  +R         +T  +
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGK--PLALVEEIRNRKDVKVFNVTKEN 172

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 126 GELLAMLGPSGSGKTTLLTALAGRLRGKF 154
           G +L + G  GSGK+T+  ALA       
Sbjct: 4   GNILLLSGHPGSGKSTIAEALANLPGVPK 32

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 9/37 (24%), Positives = 16/37 (43%)

Query: 128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ 164
            L +LG  G G+  +   L  +   +F+  I +  R 
Sbjct: 5   TLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRP 41

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 0.001
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 236 RGISGGERKRVSIG---QEMLVNPS-CLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVI 291
             +SGGE+   ++          PS   +LDE  + LD T  QRI A +R         I
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390

Query: 292 TTIHQP 297
               + 
Sbjct: 391 VISLKN 396

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR 163
            + + GPSG+GK+TLL  L       F   +++  R
Sbjct: 2   PVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTR 37

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 6/29 (20%), Positives = 14/29 (48%)

Query: 126 GELLAMLGPSGSGKTTLLTALAGRLRGKF 154
             ++ + G S +GK+ ++  L   L   +
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVLPEPW 31

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.2 bits (85), Expect = 0.003
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY 160
            + + GPSG+GK+TLL  L       F   ++ 
Sbjct: 3   PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSS 35

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 128 LLAMLGPSGSGKTTLLTALAGRLRGKF 154
           L  + GP+G GK+T    LA +L    
Sbjct: 4   LYIITGPAGVGKSTTCKRLAAQLDNSA 30

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 36.4 bits (83), Expect = 0.004
 Identities = 7/21 (33%), Positives = 9/21 (42%)

Query: 133 GPSGSGKTTLLTALAGRLRGK 153
           G   SGKTTL+         +
Sbjct: 8   GYKHSGKTTLMEKWVAAAVRE 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	691
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	100.0
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.85
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.67
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.47
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	99.24
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	99.04
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.99
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	98.22
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.88
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	97.79
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.36
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.17
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.15
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.14
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.03
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.0
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	96.93
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.91
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.88
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.81
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.79
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.74
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	96.6
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.58
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.57
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	96.56
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.51
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.48
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.43
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.37
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.3
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	96.29
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	96.29
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	96.27
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.25
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	96.23
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.23
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.23
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	96.2
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.1
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	96.09
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.06
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	96.06
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.05
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	96.0
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.99
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.92
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.91
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.89
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.89
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	95.83
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.83
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.82
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.81
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	95.81
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.8
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	95.77
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.73
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	95.73
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	95.67
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	95.65
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	95.63
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	95.62
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.58
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.55
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	95.53
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.52
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	95.51
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.51
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.45
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.42
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	95.37
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	95.33
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	95.32
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.28
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	95.26
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	95.22
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.18
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	95.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.14
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	95.14
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	95.13
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.13
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.12
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	95.11
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.05
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.02
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.01
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	95.0
d2fh5b1	207	Signal recognition particle receptor beta-subunit	94.99
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	94.99
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.92
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.92
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	94.9
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	94.87
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	94.8
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	94.77
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	94.72
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	94.71
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	94.7
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	94.68
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	94.66
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	94.65
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	94.65
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.61
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	94.58
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.46
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	94.34
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	94.22
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.17
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	94.17
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.17
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.16
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	94.1
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	94.04
d1okkd2	207	GTPase domain of the signal recognition particle r	93.98
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	93.97
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	93.91
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.89
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.84
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.72
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.67
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.63
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	93.57
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.56
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.53
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.47
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.42
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.42
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	93.41
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.39
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	93.34
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	93.33
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.28
d1ls1a2	207	GTPase domain of the signal sequence recognition p	93.26
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.21
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	93.19
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	93.15
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	93.05
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.01
d1vmaa2	213	GTPase domain of the signal recognition particle r	93.01
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.98
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	92.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.83
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.8
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.79
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	92.79
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.77
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.75
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	92.67
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	92.66
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.65
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	92.64
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.57
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	92.49
d1j8yf2	211	GTPase domain of the signal sequence recognition p	92.45
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.4
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.39
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.37
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	92.33
d2qy9a2	211	GTPase domain of the signal recognition particle r	92.3
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.29
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	92.18
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	92.18
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	92.14
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	92.12
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	92.11
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	91.96
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	91.93
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	91.92
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	91.92
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	91.91
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	91.84
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	91.72
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	91.71
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.71
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	91.45
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	91.45
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	91.41
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	91.37
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	91.37
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	91.32
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	91.31
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	91.27
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.17
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	91.05
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	90.99
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	90.92
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	90.91
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	90.91
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	90.84
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	90.81
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	90.72
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	90.61
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	90.56
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	90.37
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.3
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	90.22
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	90.17
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	90.06
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	89.99
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	89.77
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	89.66
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	89.59
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	89.52
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	88.71
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	88.6
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	88.41
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	87.71
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	87.44
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.1
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	86.93
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	86.75
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	86.74
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	86.67
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	85.98
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	85.94
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	85.71
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	85.48
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	84.72
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	84.43
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	83.93
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	83.9
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	83.54
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	83.32
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	82.21
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	81.95
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	81.94
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	81.68
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	81.13
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	80.87
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	80.86
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	80.24
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.18

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=0  Score=382.24  Aligned_cols=219  Identities=28%  Similarity=0.474  Sum_probs=199.6

Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf             17999949999814788786555678998765556412551279993881999986999858999999982989997209
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~  157 (691)
                      ..|+++||+++|.                     .+.+|+||||++++||+++|+||||||||||+++|+|.. .|++|+
T Consensus         5 ~~I~v~nlsk~yg---------------------~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~-~p~sG~   62 (239)
T d1v43a3           5 VEVKLENLTKRFG---------------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE-EPTEGR   62 (239)
T ss_dssp             CCEEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEE
T ss_pred             CEEEEEEEEEEEC---------------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCE
T ss_conf             7499987999999---------------------999981306788799899999999982999999997589-998787


Q ss_pred             EEECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             9999972791--01254899915897899999999999977614998899999999999999990997423553248877
Q 005545          158 ITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       158 I~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      |.++|+++..  ..++.+|||+|++.++|++||+||+.|.+..+   ..++++.+++++++++.++|++..++++     
T Consensus        63 I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----  134 (239)
T d1v43a3          63 IYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----  134 (239)
T ss_dssp             EEETTEECTTSCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----
T ss_pred             EEECCEECCCCCCCCCEEEEEEECHHHCCCCHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH-----
T ss_conf             99916413547700015899800335342220999999999873---9999999999999998759855660995-----


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEECCC
Q ss_conf             655989999999999983199879991999999999999999999998739-9689999479866898507879996098
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEG  314 (691)
Q Consensus       236 rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~vL~~G  314 (691)
                      ..|||||||||+|||+|+.+|++|+|||||+|||+.++.++++++++++++ |.|+|+++|++ .++..+|||+++|++|
T Consensus       135 ~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G  213 (239)
T d1v43a3         135 AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRG  213 (239)
T ss_dssp             TTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETT
T ss_pred             HHCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECC
T ss_conf             469999988999976640499824306886668989998999999999873198079994899-9999869999999899


Q ss_pred             EEEEECCHHHHHH
Q ss_conf             5777449757998
Q 005545          315 SPIYSGRAAQVMD  327 (691)
Q Consensus       315 ~iv~~G~~~~~~~  327 (691)
                      ++++.|+++++++
T Consensus       214 ~iv~~G~~~el~~  226 (239)
T d1v43a3         214 QLLQIGSPTEVYL  226 (239)
T ss_dssp             EEEEEECHHHHHH
T ss_pred             EEEEECCHHHHHH
T ss_conf             9999859999986

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=0  Score=377.10  Aligned_cols=218  Identities=34%  Similarity=0.509  Sum_probs=198.6

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|.                     .+.+|+|||+++++||+++|+||||||||||+++|+|.. .|++|+|
T Consensus         3 ~i~v~nl~k~yg---------------------~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~-~p~sG~I   60 (240)
T d1g2912           3 GVRLVDVWKVFG---------------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE-EPSRGQI   60 (240)
T ss_dssp             EEEEEEEEEEET---------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS-CCSEEEE
T ss_pred             CEEEEEEEEEEC---------------------CEEEECCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEE
T ss_conf             189986999989---------------------999985606688699899999999980999999996487-8898989


Q ss_pred             EECCEECCH--------HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             999972791--------012548999158978999999999999776149988999999999999999909974235532
Q 005545          159 TYNGRQFSS--------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVV  230 (691)
Q Consensus       159 ~~~G~~~~~--------~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v  230 (691)
                      .++|+++..        ..++.+|||+|++.++|++||+||+.+....+   ..++.+.+++++++++.++|++..+.++
T Consensus        61 ~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~---~~~~~e~~~~v~~~l~~~~l~~~~~~~p  137 (240)
T d1g2912          61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKP  137 (240)
T ss_dssp             EETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCG
T ss_pred             EECCEEECCCCHHHHCCCCCCCCEECCCCHHHCCHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHCCCH
T ss_conf             9999980356644424532255120022122231011667633068772---9998999999999998759966762993


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEE
Q ss_conf             48877655989999999999983199879991999999999999999999998739-96899994798668985078799
Q 005545          231 GGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       231 g~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                           +.|||||||||+|||+|+.+|++|++||||+|||+.++.++++.|+++.++ |.|+|+++|++ .++..+||+++
T Consensus       138 -----~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~  211 (240)
T d1g2912         138 -----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIA  211 (240)
T ss_dssp             -----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEE
T ss_pred             -----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHCCEEE
T ss_conf             -----349999999999999982699889825887656989998999999999863698899995999-99999699999


Q ss_pred             EECCCEEEEECCHHHHHH
Q ss_conf             960985777449757998
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 vL~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++++.|+++++++
T Consensus       212 vm~~G~iv~~G~~~el~~  229 (240)
T d1g2912         212 VMNRGVLQQVGSPDEVYD  229 (240)
T ss_dssp             EEETTEEEEEECHHHHHH
T ss_pred             EEECCEEEEECCHHHHHH
T ss_conf             998999999859999982

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=0  Score=379.40  Aligned_cols=220  Identities=30%  Similarity=0.479  Sum_probs=198.6

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.+                   ...+|+|||+++++||+++|+||||||||||+++|+|.. .|++|+|
T Consensus         3 ~i~v~nlsk~y~~g-------------------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~-~p~~G~I   62 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-------------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD-VPSTGEL   62 (242)
T ss_dssp             CEEEEEEEEEEGGG-------------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS-CCSEEEE
T ss_pred             EEEEEEEEEEECCC-------------------CEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEE
T ss_conf             89997579998899-------------------989980407898799899999899980999999997586-8887459


Q ss_pred             EECCEECCH-------HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             999972791-------0125489991589789999999999997761499889999999999999999099742355324
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      .++|+++..       ..++.+|||+|++.++|++||+||+.|+...+   ..++++.+++++++++.+||.+..+.++.
T Consensus        63 ~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~p~  139 (242)
T d1oxxk2          63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR  139 (242)
T ss_dssp             EETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG
T ss_pred             EECCEEEECCCHHHCCHHHCCCEEEECCCCCCCCCCHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHCCHHHHHHCCHH
T ss_conf             999999513731115312045147730433466665777766556761---37999999999999866591766648954


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCEEEE
Q ss_conf             887765598999999999998319987999199999999999999999999873-9968999947986689850787999
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~v  310 (691)
                           .|||||||||+|||||+.+|++|++||||+|||+.++.+++++++++++ .|.|+|+++|++ .++.++||++++
T Consensus       140 -----~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~v  213 (242)
T d1oxxk2         140 -----ELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGV  213 (242)
T ss_dssp             -----GSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEE
T ss_pred             -----HCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCH-HHHHHHCCEEEE
T ss_conf             -----59999985899875776046614544786679989988998999999863598799997999-999996999999


Q ss_pred             ECCCEEEEECCHHHHHH
Q ss_conf             60985777449757998
Q 005545          311 LSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++++.|+++++++
T Consensus       214 m~~G~iv~~g~~~el~~  230 (242)
T d1oxxk2         214 LVKGKLVQVGKPEDLYD  230 (242)
T ss_dssp             EETTEEEEEECHHHHHH
T ss_pred             EECCEEEEECCHHHHHH
T ss_conf             98999999869999986

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=382.86  Aligned_cols=218  Identities=31%  Similarity=0.496  Sum_probs=197.8

Q ss_pred             EEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEE
Q ss_conf             99994999981478878655567899876555641255127999388199998699985899999998298999720999
Q 005545           80 LKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKIT  159 (691)
Q Consensus        80 l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~  159 (691)
                      |+++||+++|.                     .+.+|+|+|+++++||+++|+||||||||||+++|+|.. .|++|+|.
T Consensus         1 Iev~nv~k~yg---------------------~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~-~p~sG~I~   58 (232)
T d2awna2           1 VQLQNVTKAWG---------------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE-TITSGDLF   58 (232)
T ss_dssp             EEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEE
T ss_pred             CEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEEE
T ss_conf             99999999989---------------------999981117788699899999899982999999996587-88888899


Q ss_pred             ECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             99972791--0125489991589789999999999997761499889999999999999999099742355324887765
Q 005545          160 YNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRG  237 (691)
Q Consensus       160 ~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rg  237 (691)
                      +||+++..  ..++.+|||+|++.+++.+||+||+.++...+   ..++++.+++++++++.++|.+..++++.     .
T Consensus        59 i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~l~~~~~~~~~-----~  130 (232)
T d2awna2          59 IGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----A  130 (232)
T ss_dssp             ESSSCCTTSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC-----------------
T ss_pred             ECCEECCCCCHHHCEEEEECCCCCCCCCHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----H
T ss_conf             999977888644432223433420264333788978999875---99889999999999975788656648965-----6


Q ss_pred             CCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCEEEEECCCEE
Q ss_conf             598999999999998319987999199999999999999999999873-9968999947986689850787999609857
Q 005545          238 ISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSP  316 (691)
Q Consensus       238 LSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~vL~~G~i  316 (691)
                      |||||||||+|||+|+.+|++|+|||||+|||+.++.++++.|+++.+ .|.|+|+++|++ .++..+|||+++|++|++
T Consensus       131 LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~i  209 (232)
T d2awna2         131 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRV  209 (232)
T ss_dssp             ---------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEE
T ss_pred             CCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEE
T ss_conf             9999999999999970399889975888788988998999999999874298799994899-999996999999979999


Q ss_pred             EEECCHHHHHHH
Q ss_conf             774497579987
Q 005545          317 IYSGRAAQVMDY  328 (691)
Q Consensus       317 v~~G~~~~~~~~  328 (691)
                      ++.|+++++++.
T Consensus       210 v~~G~~~el~~~  221 (232)
T d2awna2         210 AQVGKPLELYHY  221 (232)
T ss_dssp             EEEECHHHHHHS
T ss_pred             EEEECHHHHHHC
T ss_conf             998089999738

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=379.55  Aligned_cols=222  Identities=27%  Similarity=0.442  Sum_probs=197.7

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..+.                 ....+|+|||+++++||+++|+||||||||||+++|+|.. .|++|+|
T Consensus         1 mi~v~nlsk~y~~~~-----------------~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~-~p~sG~I   62 (240)
T d3dhwc1           1 MIKLSNITKVFHQGT-----------------RTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE-RPTEGSV   62 (240)
T ss_dssp             CEEEEEEEEEEECSS-----------------CEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS-CCSEEEE
T ss_pred             CEEEEEEEEEECCCC-----------------EEEEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHCCCC-CCCCCCE
T ss_conf             979982799969998-----------------1489861505788699799998999898889999875886-3667732


Q ss_pred             EECCEECCH-------HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             999972791-------0125489991589789999999999997761499889999999999999999099742355324
Q 005545          159 TYNGRQFSS-------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~-------~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg  231 (691)
                      .++|+++..       .+|+.+|||+|++.+++.+||+||+.++..++   ..++++.+++++++++.+||++..+.++ 
T Consensus        63 ~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~---~~~~~~~~~~v~~~L~~vgL~~~~~~~~-  138 (240)
T d3dhwc1          63 LVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYP-  138 (240)
T ss_dssp             EETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTT---TCCTTHHHHHHHHHHHHHSTTTTTSSCB-
T ss_pred             EECCEEEEECCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCCHHHHCCH-
T ss_conf             886768520875551155416643022522279964999999999984---9998999999999999769903554894-


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEE
Q ss_conf             8877655989999999999983199879991999999999999999999998739-968999947986689850787999
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       232 ~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~v  310 (691)
                          +.|||||||||+|||||+.+|++|++||||+|||+.++.+++++|++++++ |.|+|+++|++ ..+..+|||+++
T Consensus       139 ----~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~v  213 (240)
T d3dhwc1         139 ----SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAV  213 (240)
T ss_dssp             ----SCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEE
T ss_pred             ----HHCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHCCEEEE
T ss_conf             ----349999998999864010589868744655658988856799999999864697899983899-999986999999


Q ss_pred             ECCCEEEEECCHHHHHH
Q ss_conf             60985777449757998
Q 005545          311 LSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       311 L~~G~iv~~G~~~~~~~  327 (691)
                      |++|++++.|+++++++
T Consensus       214 l~~G~iv~~G~~~ei~~  230 (240)
T d3dhwc1         214 ISNGELIEQDTVSEVFS  230 (240)
T ss_dssp             EETTEEEEEEETTTTTC
T ss_pred             EECCEEEEECCHHHHHH
T ss_conf             97999999879999972

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=0  Score=371.16  Aligned_cols=214  Identities=28%  Similarity=0.452  Sum_probs=192.6

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|..                      .+|+||||++++||+++|+||||||||||+++|+|.. .|++|+|
T Consensus         1 mi~v~nlsk~y~~----------------------~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~-~p~sG~I   57 (229)
T d3d31a2           1 MIEIESLSRKWKN----------------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH-VPDSGRI   57 (229)
T ss_dssp             CEEEEEEEEECSS----------------------CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS-CCSEEEE
T ss_pred             CEEEEEEEEEECC----------------------EEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEE
T ss_conf             9899989999499----------------------7884337898799899999899982999999996476-8887889


Q ss_pred             EECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf             999972791--012548999158978999999999999776149988999999999999999909974235532488776
Q 005545          159 TYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFR  236 (691)
Q Consensus       159 ~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~r  236 (691)
                      +++|+++..  ..++.+|||+|++.++|++||+||+.|+...+.   ..+   .++++++++.++|.+..++++.     
T Consensus        58 ~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~---~~~---~~~~~~~l~~~~l~~~~~~~~~-----  126 (229)
T d3d31a2          58 LLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKD---PKRVLDTARDLKIEHLLDRNPL-----  126 (229)
T ss_dssp             EETTEECTTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCC---HHHHHHHHHHTTCTTTTTSCGG-----
T ss_pred             EECCEECCCCCHHHHCCEEECCCCCCCCCCCHHHHHHHHHHHCC---CCH---HHHHHHHHHHHCCHHHHHCCHH-----
T ss_conf             99567346521657405615121111746657788888776405---538---9999999998256555758955-----


Q ss_pred             CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCEEEEECCCE
Q ss_conf             5598999999999998319987999199999999999999999999873-996899994798668985078799960985
Q 005545          237 GISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       237 gLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v~vL~~G~  315 (691)
                      .|||||||||+|||+|+.+|++|+|||||+|||+.++.++.++++++++ .|.|+|+++|++ .++..++|++++|++|+
T Consensus       127 ~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~  205 (229)
T d3d31a2         127 TLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGK  205 (229)
T ss_dssp             GSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSC
T ss_pred             HCCHHHHCCHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCH-HHHHHHCCEEEEEECCE
T ss_conf             47999840140304344367714434787679989999999999999864796899974999-99999699999997999


Q ss_pred             EEEECCHHHHHH
Q ss_conf             777449757998
Q 005545          316 PIYSGRAAQVMD  327 (691)
Q Consensus       316 iv~~G~~~~~~~  327 (691)
                      +++.|+++++++
T Consensus       206 iv~~g~~~el~~  217 (229)
T d3d31a2         206 LIQVGKPEEIFE  217 (229)
T ss_dssp             EEEEECHHHHHS
T ss_pred             EEEECCHHHHHH
T ss_conf             999869999986

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=0  Score=367.25  Aligned_cols=219  Identities=27%  Similarity=0.450  Sum_probs=191.7

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+.+.                 ....+|+|+||++++||+++|+||||||||||+++|+|.. .|++|+|
T Consensus         1 mI~i~nlsk~y~~~~-----------------~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~-~p~sG~I   62 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGE-----------------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD-KPTEGEV   62 (230)
T ss_dssp             CEEEEEEEEEEEETT-----------------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEE
T ss_pred             CEEEEEEEEEECCCC-----------------EEEEEEECEEEEECCCCEEEEECCCCCCCCHHHHHCCCCC-CCCCCEE
T ss_conf             989990799948998-----------------2089871337788499799998899998216557506887-7776626


Q ss_pred             EECCEECCH-------HC-CCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-CCCCC
Q ss_conf             999972791-------01-2548999158978999999999999776149988999999999999999909974-23553
Q 005545          159 TYNGRQFSS-------SL-KRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTR-CRNSV  229 (691)
Q Consensus       159 ~~~G~~~~~-------~~-~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~  229 (691)
                      +++|+++..       .+ ++.+|||+|++.++|.+||+||+.++...+.....+..++.+++.++++.++|.+ .++.+
T Consensus        63 ~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~  142 (230)
T d1l2ta_          63 YIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK  142 (230)
T ss_dssp             EETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred             EECCEECCCCCHHHCCHHHCCEEEEEECCHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCHHHHHHCCC
T ss_conf             99999857688555123125557788041241768668887757888722478999999999999887624234553488


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCEE
Q ss_conf             24887765598999999999998319987999199999999999999999999873-99689999479866898507879
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       230 vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      +     ..|||||||||+|||||+.+|++|++||||++||+.++.+++++|+++.+ .|.|+|+++|++ ..+ ++|||+
T Consensus       143 p-----~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a-~~~drv  215 (230)
T d1l2ta_         143 P-----NQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVA-RFGERI  215 (230)
T ss_dssp             G-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HHH-TTSSEE
T ss_pred             H-----HHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEECCCH-HHH-HHCCEE
T ss_conf             0-----238999999999875652278889946876546989999999999999984399999987888-999-869989


Q ss_pred             EEECCCEEEEECCH
Q ss_conf             99609857774497
Q 005545          309 VVLSEGSPIYSGRA  322 (691)
Q Consensus       309 ~vL~~G~iv~~G~~  322 (691)
                      ++|++|++++.|..
T Consensus       216 ~~m~~G~Iv~~g~~  229 (230)
T d1l2ta_         216 IYLKDGEVEREEKL  229 (230)
T ss_dssp             EEEETTEEEEEEEC
T ss_pred             EEEECCEEEEECCC
T ss_conf             99989999995257

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=365.02  Aligned_cols=220  Identities=28%  Similarity=0.424  Sum_probs=195.2

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|.                     ...+|+||||++++||++||+||||||||||+++|+|.. .+++|+|
T Consensus         2 ~Lev~nl~k~yg---------------------~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~-~p~~G~I   59 (258)
T d1b0ua_           2 KLHVIDLHKRYG---------------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE-KPSEGAI   59 (258)
T ss_dssp             CEEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEE
T ss_pred             EEEEEEEEEEEC---------------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCE
T ss_conf             699997899989---------------------999881506688699799999899982999999997476-6789977


Q ss_pred             EECCEECCH-----------------HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
Q ss_conf             999972791-----------------012548999158978999999999999776149988999999999999999909
Q 005545          159 TYNGRQFSS-----------------SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELG  221 (691)
Q Consensus       159 ~~~G~~~~~-----------------~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lg  221 (691)
                      +++|+++..                 ..++++|||+|++.+++.+||.||+.++....  ...++.+.++++.++++.++
T Consensus        60 ~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~--~~~~~~~~~~~~~~~l~~~~  137 (258)
T d1b0ua_          60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQV--LGLSKHDARERALKYLAKVG  137 (258)
T ss_dssp             EETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT--TCCCHHHHHHHHHHHHHHTT
T ss_pred             EECCEEECCCCCCCHHCCCCCHHHHHHHHCCEEEEEECHHHCCCHHCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHHCC
T ss_conf             9999993367752000023517679997454489983323141101021365657876--29998999999999999829


Q ss_pred             CCCCC-CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf             97423-55324887765598999999999998319987999199999999999999999999873996899994798668
Q 005545          222 LTRCR-NSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR  300 (691)
Q Consensus       222 L~~~~-~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~  300 (691)
                      |.+.. ++.+     ..|||||+|||+|||+|+.+|++|++||||+|||+.++.+++++|++++++|.|+|+++|++ ..
T Consensus       138 l~~~~~~~~p-----~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl-~~  211 (258)
T d1b0ua_         138 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM-GF  211 (258)
T ss_dssp             CCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCH-HH
T ss_pred             CCHHHHCCCC-----CCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCH-HH
T ss_conf             9524430682-----20567788898999998439987885245556887888899876554103688338994899-99


Q ss_pred             HHHCCCEEEEECCCEEEEECCHHHHHHH
Q ss_conf             9850787999609857774497579987
Q 005545          301 LYRMFDKVVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       301 i~~~~D~v~vL~~G~iv~~G~~~~~~~~  328 (691)
                      +..+|||+++|++|++++.|++++++..
T Consensus       212 ~~~~adri~vm~~G~iv~~g~~~ev~~~  239 (258)
T d1b0ua_         212 ARHVSSHVIFLHQGKIEEEGDPEQVFGN  239 (258)
T ss_dssp             HHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred             HHHHCCEEEEEECCEEEEECCHHHHHHC
T ss_conf             9986999999979999998499999838

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=0  Score=359.69  Aligned_cols=232  Identities=23%  Similarity=0.394  Sum_probs=206.2

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+.+||+++|.                     .+++|+|+||++++||++||+||||||||||+++|+|.. .|.+|+|
T Consensus         2 aI~v~nl~k~yg---------------------~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~-~p~~G~i   59 (238)
T d1vpla_           2 AVVVKDLRKRIG---------------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI-KPSSGIV   59 (238)
T ss_dssp             CEEEEEEEEEET---------------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS-CCSEEEE
T ss_pred             CEEEEEEEEEEC---------------------CEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEE
T ss_conf             789995899999---------------------999980625688489799999999999999999996698-8788879


Q ss_pred             EECCEECCH---HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf             999972791---01254899915897899999999999977614998899999999999999990997423553248877
Q 005545          159 TYNGRQFSS---SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLF  235 (691)
Q Consensus       159 ~~~G~~~~~---~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~  235 (691)
                      .++|+++..   ..++.++|+||++.+++++|+.|++.|.+.++   ..++.+..++++++++.++|.+..+.+++    
T Consensus        60 ~i~G~~i~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----  132 (238)
T d1vpla_          60 TVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS----  132 (238)
T ss_dssp             EETTEETTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG----
T ss_pred             EECCEECCCCHHHHHHHEEEEEECCCCCCCCCHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHCCCHHHHHHHHH----
T ss_conf             99867244683988721867500154687866778889899861---79989999999999986797888850453----


Q ss_pred             CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCE
Q ss_conf             65598999999999998319987999199999999999999999999873996899994798668985078799960985
Q 005545          236 RGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGS  315 (691)
Q Consensus       236 rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~vL~~G~  315 (691)
                       .||||||||++||++|+.+|++++|||||+|||+.++.++.+++++++++|+|||+++|++ .++..+|||+++|++|+
T Consensus       133 -~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l-~~~~~~~drv~vl~~G~  210 (238)
T d1vpla_         133 -TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM-LEVEFLCDRIALIHNGT  210 (238)
T ss_dssp             -GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCH-HHHTTTCSEEEEEETTE
T ss_pred             -HCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCE
T ss_conf             -3799898999999998659998873379889798999999999999996599899995989-99999699999998999


Q ss_pred             EEEECCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf             77744975799876426998899999957999986
Q 005545          316 PIYSGRAAQVMDYFGSIGYVPGFNLLNPADFLLDL  350 (691)
Q Consensus       316 iv~~G~~~~~~~~f~~~G~~~~~~~~npad~~l~~  350 (691)
                      +++.|+++++.+.+.         ..|-.+.+.++
T Consensus       211 iv~~g~~~el~~~~~---------~~~~~~~f~~~  236 (238)
T d1vpla_         211 IVETGTVEELKERYK---------AQNIEEVFEEV  236 (238)
T ss_dssp             EEEEEEHHHHHHHTT---------CSSHHHHHHHH
T ss_pred             EEEECCHHHHHHCCC---------CCHHHHHHHHH
T ss_conf             999928999986528---------76699999985

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=0  Score=361.41  Aligned_cols=220  Identities=24%  Similarity=0.456  Sum_probs=192.0

Q ss_pred             CCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf             65179999499998147887865556789987655564125512799938819999869998589999999829899972
Q 005545           76 HPVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFS  155 (691)
Q Consensus        76 ~~~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~  155 (691)
                      ..+.|+++||+++|.                     .+.+|+||||++++||+++|+||||||||||+++|+|.. .|++
T Consensus         3 sd~~Lev~~l~k~yg---------------------~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~-~p~~   60 (240)
T d1ji0a_           3 SDIVLEVQSLHVYYG---------------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV-RAQK   60 (240)
T ss_dssp             CSEEEEEEEEEEEET---------------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSE
T ss_pred             CCEEEEEEEEEEEEC---------------------CEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCC
T ss_conf             560799961899989---------------------988883025788899799999999985999999996788-8880


Q ss_pred             EEEEECCEECCH-----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-CCCCCCCCC
Q ss_conf             099999972791-----01254899915897899999999999977614998899999999999999990-997423553
Q 005545          156 GKITYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL-GLTRCRNSV  229 (691)
Q Consensus       156 G~I~~~G~~~~~-----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~  229 (691)
                      |+|.++|+++..     ..+..++|++|+..+++.+||+||+.+.+..+.    .+...+++++++++.+ +|.+..+++
T Consensus        61 G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~  136 (240)
T d1ji0a_          61 GKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQL  136 (240)
T ss_dssp             EEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSB
T ss_pred             CEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHCHHHHHHCC
T ss_conf             38984244344660888887423556765545776369999998887327----88899999999998741768887585


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEE
Q ss_conf             24887765598999999999998319987999199999999999999999999873996899994798668985078799
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      ++     .|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+++++++++|.|+++++|+. .++.++||+++
T Consensus       137 ~~-----~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l-~~~~~~~drv~  210 (240)
T d1ji0a_         137 GG-----TLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNA-LGALKVAHYGY  210 (240)
T ss_dssp             SS-----SSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCH-HHHHHHCSEEE
T ss_pred             HH-----HCCHHHHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEE
T ss_conf             43-----3899999999999999829987400398867999999999999999996899899995889-99999699999


Q ss_pred             EECCCEEEEECCHHHHHH
Q ss_conf             960985777449757998
Q 005545          310 VLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       310 vL~~G~iv~~G~~~~~~~  327 (691)
                      +|++|++++.|+++++.+
T Consensus       211 vl~~G~iv~~g~~~el~~  228 (240)
T d1ji0a_         211 VLETGQIVLEGKASELLD  228 (240)
T ss_dssp             EEETTEEEEEEEHHHHHT
T ss_pred             EEECCEEEEECCHHHHHC
T ss_conf             998999999848999842

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=0  Score=359.77  Aligned_cols=221  Identities=26%  Similarity=0.393  Sum_probs=194.3

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+.+||+.+|.                     ..++|+|||+++++||+++|+||||||||||+++|+|.. .+++|+|
T Consensus         4 iL~v~nlsk~yg---------------------~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~-~p~~G~I   61 (254)
T d1g6ha_           4 ILRTENIVKYFG---------------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL-KADEGRV   61 (254)
T ss_dssp             EEEEEEEEEEET---------------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEE
T ss_pred             EEEEEEEEEEEC---------------------CEEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCEE
T ss_conf             699977899979---------------------968871217998899799999999984999999997797-6887379


Q ss_pred             EECCEECCH-----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC----------CCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf             999972791-----012548999158978999999999999776149----------98899999999999999990997
Q 005545          159 TYNGRQFSS-----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL----------PKKLTREEKIEQAEMVIMELGLT  223 (691)
Q Consensus       159 ~~~G~~~~~-----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~----------~~~~~~~~~~~~v~~~l~~lgL~  223 (691)
                      .++|+++..     ..++.++|++|++.+++.+||.||+.+++..+.          .....+++..+++.++++.+++.
T Consensus        62 ~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~  141 (254)
T d1g6ha_          62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS  141 (254)
T ss_dssp             EETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG
T ss_pred             EECCEECCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf             99999664056999998338725776424788742321430133303450456654213532899999999998761963


Q ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHH
Q ss_conf             42355324887765598999999999998319987999199999999999999999999873996899994798668985
Q 005545          224 RCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYR  303 (691)
Q Consensus       224 ~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~  303 (691)
                      +..+++++     .|||||||||+|||+|+.+|++|+|||||+|||+.++.++.+.+++++++|.||++++|+.. ++..
T Consensus       142 ~~~~~~~~-----~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~-~~~~  215 (254)
T d1g6ha_         142 HLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLN  215 (254)
T ss_dssp             GGTTSBGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGG
T ss_pred             HHCCCCHH-----HCCCHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHH
T ss_conf             02059535-----69918888999999997592723243976569999999999999999978998999947699-9998


Q ss_pred             CCCEEEEECCCEEEEECCHHHHHH
Q ss_conf             078799960985777449757998
Q 005545          304 MFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       304 ~~D~v~vL~~G~iv~~G~~~~~~~  327 (691)
                      +||||++|++|+++..|+++++..
T Consensus       216 ~~Drv~vm~~G~iv~~g~~~e~~~  239 (254)
T d1g6ha_         216 YIDHLYVMFNGQIIAEGRGEEEIK  239 (254)
T ss_dssp             GCSEEEEEETTEEEEEEESHHHHH
T ss_pred             HCCEEEEEECCEEEEEECHHHHHH
T ss_conf             699999996998999966899865

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=355.13  Aligned_cols=219  Identities=27%  Similarity=0.491  Sum_probs=181.5

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|+|+..                   .+.+|+|+|+++++||.+||+||||||||||+++|+|.+ .|.+|+|
T Consensus         1 eI~~~nvsf~Y~~~-------------------~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~-~p~~G~I   60 (241)
T d2pmka1           1 DITFRNIRFRYKPD-------------------SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY-IPENGQV   60 (241)
T ss_dssp             EEEEEEEEEESSTT-------------------SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEEE
T ss_pred             CEEEEEEEEEECCC-------------------CCCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC-CCCCCEE
T ss_conf             92999999990899-------------------960374248998499999999999998999999997357-8888899


Q ss_pred             EECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH--HHHHHC-CCCCCCCCCCC
Q ss_conf             999972791----01254899915897899999999999977614998899999999999--999990-99742355324
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAE--MVIMEL-GLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~--~~l~~l-gL~~~~~~~vg  231 (691)
                      .+||+++..    .+++.++||+|++.+++ .||+||+.++..     ..+.++..+..+  .+.+.+ .++...++.++
T Consensus        61 ~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~  134 (241)
T d2pmka1          61 LIDGHDLALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMSVEKVIYAAKLAGAHDFISELREGYNTIVG  134 (241)
T ss_dssp             EETTEETTTSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTST-----TCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCS
T ss_pred             EECCEEECCCCHHHHHCEEEEEECCCCCCC-CCCCCCCCCCCC-----CCCHHHHHHHHHHHHHHHHHHHHHCCHHHHCC
T ss_conf             999999440024655352889824465578-400035223575-----54388899999997557888763201344327


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEE
Q ss_conf             88776559899999999999831998799919999999999999999999987399689999479866898507879996
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~vL  311 (691)
                      .. ...||||||||++|||+|+.+|++++||||||+||+.++.++++.|+++.+ ++|+|+++|++..  ...+|+|++|
T Consensus       135 ~~-g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~--~~~~D~i~vl  210 (241)
T d2pmka1         135 EQ-GAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK-GRTVIIIAHRLST--VKNADRIIVM  210 (241)
T ss_dssp             TT-TTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT-TSEEEEECSSGGG--GTTSSEEEEE
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHHCCEEEEE
T ss_conf             87-886698898987544344416513556477655598999999999999858-9989999788999--9849999999


Q ss_pred             CCCEEEEECCHHHHHH
Q ss_conf             0985777449757998
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      ++|++++.|++++++.
T Consensus       211 ~~G~Iv~~G~~~ell~  226 (241)
T d2pmka1         211 EKGKIVEQGKHKELLS  226 (241)
T ss_dssp             ETTEEEEEECHHHHHH
T ss_pred             ECCEEEEECCHHHHHH
T ss_conf             8999999889999982

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=0  Score=351.70  Aligned_cols=197  Identities=28%  Similarity=0.508  Sum_probs=179.8

Q ss_pred             CEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCH--HCCCCEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf             12799938819999869998589999999829899972099999972791--0125489991589789999999999997
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSS--SLKRKTGFVTQDDVLYPHLTVLETLSYA  195 (691)
Q Consensus       118 ~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~--~~~~~i~~v~Q~~~l~~~lTV~E~L~~~  195 (691)
                      |+|+++. +|+++|+||||||||||+++|+|.. .|++|+|.++|+++..  ..++.+|||+|++.++|++||+||+.|+
T Consensus        17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~-~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~ltV~enl~~~   94 (240)
T d2onka1          17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIV-KPDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG   94 (240)
T ss_dssp             EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSS-CCSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTT
T ss_pred             EEEEEEC-CEEEEEECCCCCHHHHHHHHHHCCC-CCCCEEEEECCEECCCCCHHHCCCEEECCCHHHCCCCHHHHHHHHH
T ss_conf             9999749-9799999799980999999997399-9896289999999886998992852252314435220155766653


Q ss_pred             HHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHH
Q ss_conf             76149988999999999999999909974235532488776559899999999999831998799919999999999999
Q 005545          196 ALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQR  275 (691)
Q Consensus       196 a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~  275 (691)
                      .  +   ..++.+++++++++++.+||.+..+.++.     .|||||||||+|||||+.+|++|+|||||+|||+.++..
T Consensus        95 l--~---~~~~~~~~~~v~~~l~~~gl~~~~~~~~~-----~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~  164 (240)
T d2onka1          95 L--R---NVERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGV  164 (240)
T ss_dssp             C--T---TSCHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHH
T ss_pred             H--C---CCCHHHHHHHHHHHHHHCCCHHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCCEEECCCCCCCCHHHHHH
T ss_conf             2--3---36778899999999986383756657944-----489999899999877751677067528655588799999


Q ss_pred             HHHHHHHHHHC-CCEEEEEECCCCHHHHHCCCEEEEECCCEEEEECCHHHHHH
Q ss_conf             99999998739-96899994798668985078799960985777449757998
Q 005545          276 IVATLRGLARG-GRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       276 i~~~L~~l~~~-g~tii~~~H~p~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~  327 (691)
                      +.+.+++++++ |.|+|+++|++ .++..+||++++|++|++++.|+++++++
T Consensus       165 i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~el~~  216 (240)
T d2onka1         165 LMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKELFS  216 (240)
T ss_dssp             HHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEECCH-HHHHHHCCEEEEEECCEEEEEECHHHHHC
T ss_conf             99999999874397699981899-99999699999998999999906999832

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=0  Score=350.37  Aligned_cols=222  Identities=27%  Similarity=0.421  Sum_probs=183.5

Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf             17999949999814788786555678998765556412551279993881999986999858999999982989997209
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~  157 (691)
                      ..|+|+||+|+|+...                  .+.+|+|+|+++++||++||+||||||||||+++|+|.+ .|.+|+
T Consensus        10 g~I~~~nvsf~Y~~~~------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~-~p~~G~   70 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNRP------------------DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLY-QPTGGQ   70 (251)
T ss_dssp             CCEEEEEEEECCTTST------------------TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS-CCSEEE
T ss_pred             CEEEEEEEEEECCCCC------------------CCEEEECEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC-CCCCCE
T ss_conf             3699999899889999------------------997674438998499899999999984999999986143-787689


Q ss_pred             EEECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHH-----HHHHHHHHHCCCCCCCCC
Q ss_conf             9999972791----0125489991589789999999999997761499889999999-----999999999099742355
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKI-----EQAEMVIMELGLTRCRNS  228 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~  228 (691)
                      |++||+++..    .+++.++||+|++.+++ .||+||+.++...    .....+..     ....+.++  .|++..++
T Consensus        71 I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~----~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~  143 (251)
T d1jj7a_          71 LLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQ----KPTMEEITAAAVKSGAHSFIS--GLPQGYDT  143 (251)
T ss_dssp             EEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSS----CCCHHHHHHHHHHHTCHHHHH--TSTTGGGC
T ss_pred             EEECCEECCHHHHHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHCC----CCHHHHHHHHHHHHHHHHHHH--HCCCCCHH
T ss_conf             9889985311013788877654045650027-6346554542101----302788999999998999998--56121113


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHCCCE
Q ss_conf             324887765598999999999998319987999199999999999999999999873-9968999947986689850787
Q 005545          229 VVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLAR-GGRTVITTIHQPSSRLYRMFDK  307 (691)
Q Consensus       229 ~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~~~H~p~~~i~~~~D~  307 (691)
                      .++. ....||||||||++|||+|+.+|++++||||||+||+.++.++++.|+++.+ .++|+|+++|++. . .+.||+
T Consensus       144 ~i~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~-~-~~~aDr  220 (251)
T d1jj7a_         144 EVDE-AGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS-L-VEQADH  220 (251)
T ss_dssp             BCCS-SCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH-H-HHTCSE
T ss_pred             HHHC-CCCCCCHHHCEEEEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-H-HHHCCE
T ss_conf             6751-676689547048998604456870787167576568536899999999976506989999959799-9-985999


Q ss_pred             EEEECCCEEEEECCHHHHHHH
Q ss_conf             999609857774497579987
Q 005545          308 VVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       308 v~vL~~G~iv~~G~~~~~~~~  328 (691)
                      |++|++|++++.|+++++++.
T Consensus       221 I~vl~~G~iv~~Gt~~eLl~~  241 (251)
T d1jj7a_         221 ILFLEGGAIREGGTHQQLMEK  241 (251)
T ss_dssp             EEEEETTEEEEEECHHHHHHH
T ss_pred             EEEEECCEEEEECCHHHHHHC
T ss_conf             999989999998899999859

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=0  Score=350.16  Aligned_cols=219  Identities=28%  Similarity=0.452  Sum_probs=179.8

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+|+|+..                    +.+|+|||+++++||++||+||||||||||+++|+|.. .|.+|+|
T Consensus         1 mle~knvsf~Y~~~--------------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G~I   59 (242)
T d1mv5a_           1 MLSARHVDFAYDDS--------------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY-QPTAGEI   59 (242)
T ss_dssp             CEEEEEEEECSSSS--------------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS-CCSBSCE
T ss_pred             CEEEEEEEEECCCC--------------------CCEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHHHH-CCCCCEE
T ss_conf             97999889987999--------------------84142258998599999999999997999999999960-9898779


Q ss_pred             EECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH--HH-CCCCCCCCCCCC
Q ss_conf             999972791----01254899915897899999999999977614998899999999999999--99-099742355324
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVI--ME-LGLTRCRNSVVG  231 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l--~~-lgL~~~~~~~vg  231 (691)
                      .+||+++..    .+++.++||+|++.+++. ||+||+.++..    ...+..+..+..+...  +. ..+++..++.++
T Consensus        60 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  134 (242)
T d1mv5a_          60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLE----GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVG  134 (242)
T ss_dssp             EETTEESTTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTT----SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEES
T ss_pred             EECCEEECCCCHHHHHHHEEEECCCCCCCCC-CHHHHEECCCC----CCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
T ss_conf             8899884424678887436797566545785-34543012445----554235677899999755542037421015236


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEE
Q ss_conf             88776559899999999999831998799919999999999999999999987399689999479866898507879996
Q 005545          232 GPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       232 ~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~vL  311 (691)
                      +. ...||||||||++|||||+.+|++++||||||+||+.++..+++.|+++++ ++|+|+++|++. .+ ..||+|++|
T Consensus       135 ~~-g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~i~vl  210 (242)
T d1mv5a_         135 ER-GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK-GRTTLVIAHRLS-TI-VDADKIYFI  210 (242)
T ss_dssp             TT-SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT-TSEEEEECCSHH-HH-HHCSEEEEE
T ss_pred             CC-CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH-HH-HHCCEEEEE
T ss_conf             87-898799999999999998529989996588655698899999887888717-998999978799-99-849999999


Q ss_pred             CCCEEEEECCHHHHHH
Q ss_conf             0985777449757998
Q 005545          312 SEGSPIYSGRAAQVMD  327 (691)
Q Consensus       312 ~~G~iv~~G~~~~~~~  327 (691)
                      ++|++++.|+++++++
T Consensus       211 ~~G~iv~~G~~~eLl~  226 (242)
T d1mv5a_         211 EKGQITGSGKHNELVA  226 (242)
T ss_dssp             ETTEECCCSCHHHHHH
T ss_pred             ECCEEEEECCHHHHHH
T ss_conf             8999999999999986

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=0  Score=348.42  Aligned_cols=218  Identities=29%  Similarity=0.433  Sum_probs=183.5

Q ss_pred             CEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             51799994999981478878655567899876555641255127999388199998699985899999998298999720
Q 005545           77 PVTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus        77 ~~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G  156 (691)
                      ...|+|+||+|+|+..                   .+.+|+|||+++++||.+||+||||||||||+++|+|.. .+.+|
T Consensus        14 ~g~I~~~nvsf~Y~~~-------------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~-~p~~G   73 (255)
T d2hyda1          14 QGRIDIDHVSFQYNDN-------------------EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY-DVTSG   73 (255)
T ss_dssp             SCCEEEEEEEECSCSS-------------------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSS-CCSEE
T ss_pred             CCEEEEEEEEEEECCC-------------------CCCCEECEEEEECCCCEEEEECCCCCCHHHHHHHHHHCC-CCCCC
T ss_conf             8879999889995999-------------------976064438998399899998899980999999997127-86300


Q ss_pred             EEEECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHC-------CCCCC
Q ss_conf             99999972791----01254899915897899999999999977614998899999999999999990-------99742
Q 005545          157 KITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMEL-------GLTRC  225 (691)
Q Consensus       157 ~I~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~l-------gL~~~  225 (691)
                      +|.++|.++..    .+|+.++||+|++.+++ .||+||+.++..     ..+.++    +.++++..       .|++.
T Consensus        74 ~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~-----~~~~~~----~~~al~~~~l~~~i~~lp~g  143 (255)
T d2hyda1          74 QILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRP-----TATDEE----VVEAAKMANAHDFIMNLPQG  143 (255)
T ss_dssp             EEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCS-----SCCHHH----HHHHHHHTTCHHHHHTSTTG
T ss_pred             CCCCCCEECCCCCHHHHHHEEEEEECCCCCCC-CCHHHHHHCCCC-----CCCHHH----HHHHHHHHCCHHHHHHCCCC
T ss_conf             01539987530788886341456510156899-879999851586-----799999----99999996979999736242


Q ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCC
Q ss_conf             35532488776559899999999999831998799919999999999999999999987399689999479866898507
Q 005545          226 RNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF  305 (691)
Q Consensus       226 ~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~  305 (691)
                      .++.+++ ....||||||||++|||+|+.+|++++||||||+||+.++..+++.|+++.+ ++|+|+++|++..  ...|
T Consensus       144 l~t~i~~-~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~-~~TvI~itH~~~~--~~~~  219 (255)
T d2hyda1         144 YDTEVGE-RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK-DRTTLIVAHRLST--ITHA  219 (255)
T ss_dssp             GGCBCCG-GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG--TTTC
T ss_pred             CCCHHCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEECCHHH--HHHC
T ss_conf             0103338-8898499999999999998559989998376544797799999999998753-8889999689999--9859


Q ss_pred             CEEEEECCCEEEEECCHHHHHHH
Q ss_conf             87999609857774497579987
Q 005545          306 DKVVVLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       306 D~v~vL~~G~iv~~G~~~~~~~~  328 (691)
                      |+|++|++|++++.|++++++..
T Consensus       220 D~ii~l~~G~iv~~G~~~eLl~~  242 (255)
T d2hyda1         220 DKIVVIENGHIVETGTHRELIAK  242 (255)
T ss_dssp             SEEEEEETTEEEEEECHHHHHHT
T ss_pred             CEEEEEECCEEEEECCHHHHHHC
T ss_conf             99999989999998899999868

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=0  Score=345.43  Aligned_cols=219  Identities=27%  Similarity=0.452  Sum_probs=181.7

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+|+||+|+|+..                   ...+|+|||+++++||.+||+||||||||||+++|+|.. .|.+|+|
T Consensus        13 ~I~~~nvsf~Y~~~-------------------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~-~p~~G~I   72 (253)
T d3b60a1          13 DLEFRNVTFTYPGR-------------------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFY-DIDEGHI   72 (253)
T ss_dssp             CEEEEEEEECSSSS-------------------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTT-CCSEEEE
T ss_pred             EEEEEEEEEEECCC-------------------CCCEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEE
T ss_conf             79999889992999-------------------976353328998599999999999985999999986216-8884689


Q ss_pred             EECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHH-----HHHHHHHCCCCCCCCCC
Q ss_conf             999972791----012548999158978999999999999776149988999999999-----99999990997423553
Q 005545          159 TYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQ-----AEMVIMELGLTRCRNSV  229 (691)
Q Consensus       159 ~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~  229 (691)
                      .+||+++..    .+++.++||+|++.++ ..|+++|+.++..    ...+.++..+.     +.+.++.  +++..++.
T Consensus        73 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~n~~~~~~----~~~~~~~i~~a~~~~~l~~~i~~--l~~gl~t~  145 (253)
T d3b60a1          73 LMDGHDLREYTLASLRNQVALVSQNVHLF-NDTVANNIAYART----EEYSREQIEEAARMAYAMDFINK--MDNGLDTI  145 (253)
T ss_dssp             EETTEETTTBCHHHHHHTEEEECSSCCCC-SSBHHHHHHTTTT----SCCCHHHHHHHHHTTTCHHHHHH--STTGGGSB
T ss_pred             EECCCCCCHHHHHHHHHEEEEEEECCCCC-CCCHHHHHHHCCC----CCCCHHHHHHHHHHHHHHHHHHH--CCCCCHHH
T ss_conf             87880121110665420687995025447-8620243320572----20899999999999817999973--55441014


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEE
Q ss_conf             24887765598999999999998319987999199999999999999999999873996899994798668985078799
Q 005545          230 VGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       230 vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +++ ....||||||||++|||||+.+|++|+||||||+||+.++..+++.|+++.+ ++|+|+++|++. .+ ..||+|+
T Consensus       146 ~~~-~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~-~~-~~~D~v~  221 (253)
T d3b60a1         146 IGE-NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS-TI-EQADEIV  221 (253)
T ss_dssp             CCT-TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGG-GT-TTCSEEE
T ss_pred             HCC-CCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH-HH-HHCCEEE
T ss_conf             348-8898499999999999999549988995164445898899999999987522-788999988799-99-8599999


Q ss_pred             EECCCEEEEECCHHHHHHH
Q ss_conf             9609857774497579987
Q 005545          310 VLSEGSPIYSGRAAQVMDY  328 (691)
Q Consensus       310 vL~~G~iv~~G~~~~~~~~  328 (691)
                      +|++|++++.|++++++.-
T Consensus       222 vl~~G~Iv~~G~~~eLl~~  240 (253)
T d3b60a1         222 VVEDGIIVERGTHSELLAQ  240 (253)
T ss_dssp             EEETTEEEEEECHHHHHHH
T ss_pred             EEECCEEEEECCHHHHHHC
T ss_conf             9989999998899999868

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=0  Score=312.74  Aligned_cols=208  Identities=27%  Similarity=0.426  Sum_probs=178.4

Q ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE
Q ss_conf             17999949999814788786555678998765556412551279993881999986999858999999982989997209
Q 005545           78 VTLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK  157 (691)
Q Consensus        78 ~~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~  157 (691)
                      +.|+.+|++.                         ...|++||+++++||++||+||||||||||+++|+|..  +.+|+
T Consensus         2 ~il~~~dv~~-------------------------~~~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~--~~~G~   54 (231)
T d1l7vc_           2 IVMQLQDVAE-------------------------STRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT--SGKGS   54 (231)
T ss_dssp             EEEEEEEECC-------------------------TTTSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC--CCSSE
T ss_pred             EEEEEECCCC-------------------------CCEECCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCC--CCCEE
T ss_conf             5999987415-------------------------71555888899489899999899980999999994887--99559


Q ss_pred             EEECCEECCH----HCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf             9999972791----012548999158978999999999999776149988999999999999999909974235532488
Q 005545          158 ITYNGRQFSS----SLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGP  233 (691)
Q Consensus       158 I~~~G~~~~~----~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~  233 (691)
                      |.++|+++..    ..+...+|++|+.......++++++.+...   +     ..+.++++++++.++|.+..++++.  
T Consensus        55 I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-----~~~~~~~~~~~~~~~l~~~~~~~~~--  124 (231)
T d1l7vc_          55 IQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---D-----KTRTELLNDVAGALALDDKLGRSTN--  124 (231)
T ss_dssp             EEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCS---C-----TTCHHHHHHHHHHTTCTTTTTSBGG--
T ss_pred             EEECCEECCCCCHHHHHHHCEEEECCCCCCCCCCHHHHHHHCCC---H-----HHHHHHHHHHHHHCCCHHHHCCCHH--
T ss_conf             99999999869989998640245121357744209887641001---4-----6689999999986598767676844--


Q ss_pred             CCCCCCHHHHHHHHHHHHHHH-------CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCC
Q ss_conf             776559899999999999831-------9987999199999999999999999999873996899994798668985078
Q 005545          234 LFRGISGGERKRVSIGQEMLV-------NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFD  306 (691)
Q Consensus       234 ~~rgLSGGerqRv~Ia~aL~~-------~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D  306 (691)
                         .||||||||++||++|+.       +|++++|||||+|||+.++..+.+++++++++|.|||+++|++ ..+.++||
T Consensus       125 ---~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl-~~~~~~~d  200 (231)
T d1l7vc_         125 ---QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL-NHTLRHAH  200 (231)
T ss_dssp             ---GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCH-HHHHHHCS
T ss_pred             ---HCCHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH-HHHHHHCC
T ss_conf             ---56998899999999998517133899889997187777898999999999999986799999996779-99999799


Q ss_pred             EEEEECCCEEEEECCHHHHH
Q ss_conf             79996098577744975799
Q 005545          307 KVVVLSEGSPIYSGRAAQVM  326 (691)
Q Consensus       307 ~v~vL~~G~iv~~G~~~~~~  326 (691)
                      ++++|++|++++.|++++++
T Consensus       201 ri~vl~~G~iv~~G~~~ev~  220 (231)
T d1l7vc_         201 RAWLLKGGKMLASGRREEVL  220 (231)
T ss_dssp             BCCBEETTEECCCSBHHHHS
T ss_pred             EEEEEECCEEEEECCHHHHH
T ss_conf             99999799899988999981

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-45  Score=309.51  Aligned_cols=195  Identities=25%  Similarity=0.353  Sum_probs=158.3

Q ss_pred             CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf             41255127999388199998699985899999998298999720999999727910125489991589789999999999
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L  192 (691)
                      +++|+|+|+++++||++||+||||||||||+++|+|.+ .+.+|+|.++|         +++|++|++.+++ .||+||+
T Consensus        49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~-~p~~G~I~~~g---------~i~~v~Q~~~l~~-~tv~eni  117 (281)
T d1r0wa_          49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGEL-EASEGIIKHSG---------RVSFCSQFSWIMP-GTIKENI  117 (281)
T ss_dssp             CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS-CCSEEEEECCS---------CEEEECSSCCCCS-EEHHHHH
T ss_pred             CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEEEECC---------EEEEEECCCCCCC-CEEECCC
T ss_conf             76773759998599999999899982999999995797-47882899999---------9999816430267-6032142


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHH---HHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf             99776149988999999999999---999909974235532488776559899999999999831998799919999999
Q 005545          193 SYAALLRLPKKLTREEKIEQAEM---VIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLD  269 (691)
Q Consensus       193 ~~~a~~~~~~~~~~~~~~~~v~~---~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD  269 (691)
                      .++..      .........++.   ......+.+..++.++. ....||||||||++|||+|+.+|++|+|||||++||
T Consensus       118 ~~~~~------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~-~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD  190 (281)
T d1r0wa_         118 IFGVS------YDEYRYKSVVKACQLQQDITKFAEQDNTVLGE-GGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLD  190 (281)
T ss_dssp             TTTSC------CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSC
T ss_pred             CCCCC------CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HCCCCCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCC
T ss_conf             03334------56057999999977699998461233235555-423779999999999999986963513338554489


Q ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCEEEEECCHHHHHH
Q ss_conf             9999999999999873996899994798668985078799960985777449757998
Q 005545          270 STTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMD  327 (691)
Q Consensus       270 ~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~  327 (691)
                      +.++.++++.+.....+++|+|+++|++ . ....||+|++|++|++++.|+++++..
T Consensus       191 ~~~~~~i~~~~~~~~~~~~tvi~itH~~-~-~l~~aDrI~vl~~G~i~~~Gt~~eL~~  246 (281)
T d1r0wa_         191 VFTEEQVFESCVCKLMANKTRILVTSKM-E-HLRKADKILILHQGSSYFYGTFSELQS  246 (281)
T ss_dssp             HHHHHHHHHHCCCCCTTTSEEEEECSCH-H-HHHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCEEEEEECHH-H-HHHHCCEEEEEECCEEEEECCHHHHHC
T ss_conf             8999999999998862899999992528-9-998599999998999999878999960

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7e-43  Score=290.27  Aligned_cols=196  Identities=22%  Similarity=0.388  Sum_probs=162.9

Q ss_pred             EEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE
Q ss_conf             79999499998147887865556789987655564125512799938819999869998589999999829899972099
Q 005545           79 TLKFEDVAYSINLHTSKGSCFATSHGEPNKQTRTVSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI  158 (691)
Q Consensus        79 ~l~f~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I  158 (691)
                      .|+++||+++|+                      +.+|+|+|+++++||+++|+||||||||||+++|+|.+ .|.+|+|
T Consensus         2 ~lev~~ls~~y~----------------------~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~-~p~~G~I   58 (200)
T d1sgwa_           2 KLEIRDLSVGYD----------------------KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL-KPLKGEI   58 (200)
T ss_dssp             EEEEEEEEEESS----------------------SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS-CCSEEEE
T ss_pred             EEEEEEEEEEEC----------------------CEEEECEEEEECCCCEEEEECCCCCHHHHHHHHHHCCC-CCCCCEE
T ss_conf             599998999939----------------------92884208898599899999999971999999996620-5677889


Q ss_pred             EECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             99997279101254899915897899999999999977614998899999999999999990997423553248877655
Q 005545          159 TYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGI  238 (691)
Q Consensus       159 ~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgL  238 (691)
                      .+||+++.. .+..++|++|+..+++.+|++|++.+.+.+... ...+    .++.+.++.+++.+. +.+++     .|
T Consensus        59 ~~~g~~i~~-~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~-~~~~~-----~L  126 (200)
T d1sgwa_          59 IYNGVPITK-VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-KVNK----NEIMDALESVEVLDL-KKKLG-----EL  126 (200)
T ss_dssp             EETTEEGGG-GGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-CCCH----HHHHHHHHHTTCCCT-TSBGG-----GS
T ss_pred             EECCEEHHH-HCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCC-CCCH----HHHHHHHHHCCCCCC-CCCCC-----CC
T ss_conf             999896267-367089995013578882899999999975488-6379----999999987488563-01268-----68


Q ss_pred             CHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECC
Q ss_conf             989999999999983199879991999999999999999999998739968999947986689850787999609
Q 005545          239 SGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSE  313 (691)
Q Consensus       239 SGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~vL~~  313 (691)
                      |||||||++||++|+.+|++++|||||+|||+.++.++++.++++.+++.++|+++|+.    ..+||.+.+|++
T Consensus       127 SgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~----l~~~D~~~~l~~  197 (200)
T d1sgwa_         127 SQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE----LSYCDVNENLHK  197 (200)
T ss_dssp             CHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC----CTTSSEEEEGGG
T ss_pred             CCCHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECH----HHHCCHHHHEEE
T ss_conf             97188889999988649989998686201699999999999999986799999999162----544161234010

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.47  E-value=1.4e-15  Score=114.99  Aligned_cols=156  Identities=17%  Similarity=0.148  Sum_probs=99.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECC--CCC--CCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             999986999858999999982989997209999997279101254899915--897--8999999999999776149988
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQ--DDV--LYPHLTVLETLSYAALLRLPKK  203 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q--~~~--l~~~lTV~E~L~~~a~~~~~~~  203 (691)
                      .++|+||||||||||+++|+|.+ ++..|.+...+.+....-++ .++..+  .+.  .....+..+.      .+    
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l-~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~------~~----   69 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERL-GKRAIGFWTEEVRDPETKKR-TGFRIITTEGKKKIFSSKFFTSK------KL----   69 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH-GGGEEEEEEEEEC------C-CEEEEEETTCCEEEEEETTCCCS------SE----
T ss_pred             EEEEECCCCCHHHHHHHHHHHCC-CCCCCEEEECCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH------HH----
T ss_conf             89999899938999999998148-88864699877132888876-53112336677788754113455------44----


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999990997423553248877655989999999999983199879991999999999999999999998
Q 005545          204 LTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL  283 (691)
Q Consensus       204 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l  283 (691)
                      ..+             .+.    +..     ...+++|+++|.++++++..+|+++++|||....  .........+.++
T Consensus        70 ~~~-------------~~~----~~~-----~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~--~~~~~~~~~l~~~  125 (178)
T d1ye8a1          70 VGS-------------YGV----NVQ-----YFEELAIPILERAYREAKKDRRKVIIIDEIGKME--LFSKKFRDLVRQI  125 (178)
T ss_dssp             ETT-------------EEE----CHH-----HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTG--GGCHHHHHHHHHH
T ss_pred             HHH-------------HHC----CCC-----HHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC--HHHHHHHHHHHHH
T ss_conf             302-------------303----762-----5665320137899999974099742302777310--0457999999987


Q ss_pred             HH-CCCEEEEEECCCCHHHHHCCCEEEEECCCEEEEECC
Q ss_conf             73-996899994798668985078799960985777449
Q 005545          284 AR-GGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGR  321 (691)
Q Consensus       284 ~~-~g~tii~~~H~p~~~i~~~~D~v~vL~~G~iv~~G~  321 (691)
                      .+ .+.++++++|+..  ....+|++..+.+|+++.-++
T Consensus       126 l~~~~~~il~~~h~~~--~~~~~~~i~~~~~~~i~~v~~  162 (178)
T d1ye8a1         126 MHDPNVNVVATIPIRD--VHPLVKEIRRLPGAVLIELTP  162 (178)
T ss_dssp             HTCTTSEEEEECCSSC--CSHHHHHHHTCTTCEEEECCT
T ss_pred             HCCCCCEEEEEECCHH--HHHHHCEEEEEECCEEEEECC
T ss_conf             5057978999974477--898636599871999999899

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=2.9e-10  Score=80.76  Aligned_cols=77  Identities=23%  Similarity=0.306  Sum_probs=64.0

Q ss_pred             CCCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEE
Q ss_conf             765598999999999998----3199879991999999999999999999998739968999947986689850787999
Q 005545          235 FRGISGGERKRVSIGQEM----LVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVV  310 (691)
Q Consensus       235 ~rgLSGGerqRv~Ia~aL----~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~v  310 (691)
                      ...+|+|||+...++..+    ...+++++.|||-++|++..+..+++.|+..++ +.-+|+|||.|.  +...+|+++.
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~-~~QviitTHsp~--~~~~~d~~~~  293 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK-HTQFIVITHNKI--VMEAADLLHG  293 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT-TSEEEEECCCTT--GGGGCSEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCHH--HHHHCCCEEE
T ss_conf             1102577766777776655654226744554320335797899999999998554-887999989889--9973242899


Q ss_pred             --ECCC
Q ss_conf             --6098
Q 005545          311 --LSEG  314 (691)
Q Consensus       311 --L~~G  314 (691)
                        +.+|
T Consensus       294 v~~~~g  299 (308)
T d1e69a_         294 VTMVNG  299 (308)
T ss_dssp             EEESSS
T ss_pred             EEEECC
T ss_conf             999699

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=8.4e-10  Score=77.77  Aligned_cols=74  Identities=24%  Similarity=0.313  Sum_probs=62.8

Q ss_pred             CCCCHHHHHHHHHHHHH----HHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCCCEEEEE
Q ss_conf             65598999999999998----31998799919999999999999999999987399689999479866898507879996
Q 005545          236 RGISGGERKRVSIGQEM----LVNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMFDKVVVL  311 (691)
Q Consensus       236 rgLSGGerqRv~Ia~aL----~~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~D~v~vL  311 (691)
                      +.+|||||.++++|..+    ..+++++++|||+++||+..+..+.+.|++++..+.-+|++||+|  .+...+|+.+..
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~--~~~~~ad~~~~V  408 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV  408 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCH--HHHHHCCCEEEE
T ss_conf             332230479999999999954799977999688777899999999999999728998899995878--999736617999

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.22  E-value=6e-05  Score=46.59  Aligned_cols=52  Identities=23%  Similarity=0.193  Sum_probs=37.8

Q ss_pred             HHHHCCCEEEEECCCCCCCHHHHHHH-HHHHHHHHHCCCEEEEEECCCCHHHHHC
Q ss_conf             98319987999199999999999999-9999998739968999947986689850
Q 005545          251 EMLVNPSCLLLDEPTSGLDSTTAQRI-VATLRGLARGGRTVITTIHQPSSRLYRM  304 (691)
Q Consensus       251 aL~~~P~illlDEPtsgLD~~~~~~i-~~~L~~l~~~g~tii~~~H~p~~~i~~~  304 (691)
                      ..+.+.+++++||..+|-++.....+ ..++..+.+.+..++++||..  ++..+
T Consensus       110 ~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~--eL~~l  162 (224)
T d1ewqa2         110 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYF--ELTAL  162 (224)
T ss_dssp             HHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCH--HHHTC
T ss_pred             CCCCCCCEEEECCCCCCCCHHHHCCHHHHHHHHHHHCCCCEEEEEECH--HHHHH
T ss_conf             028977278554545686233200258888888862376137865202--33322

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=3.1e-05  Score=48.45  Aligned_cols=133  Identities=15%  Similarity=0.090  Sum_probs=70.0

Q ss_pred             CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf             12551279993881999986999858999999982989-99720999999727910125489991589789999999999
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLR-GKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~-~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L  192 (691)
                      .+=+|+++. ..+.++.|.|||.+||||+||.++-... .. .|-      .+..    ..+-++--|.++-.+...|++
T Consensus        30 ~VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~l~~~laq-~G~------~VpA----~~a~~~~~d~I~~~~~~~d~~   97 (234)
T d1wb9a2          30 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAY-IGS------YVPA----QKVEIGPIDRIFTRVGAADDL   97 (234)
T ss_dssp             CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHT-TTC------CBSS----SEEEECCCCEEEEEEC-----
T ss_pred             CCCEEEEEC-CCCEEEEEECCCCHHHHHHHHHHHHHHHHHH-CCC------EEEC----CCEECCCCHHHEEEECCCCCC
T ss_conf             264057988-9953999954673136899998799999987-297------6741----766613442023487467534


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHH
Q ss_conf             99776149988999999999999999909974235532488776559899999999999831998799919999999999
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTT  272 (691)
Q Consensus       193 ~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~  272 (691)
                      .-+.                                        +-=..|.+|++-......+.+++++||+.+|-++..
T Consensus        98 ~~~~----------------------------------------S~F~~E~~~~~~il~~~~~~sLvliDE~~~gT~~~e  137 (234)
T d1wb9a2          98 ASGR----------------------------------------STFMVEMTETANILHNATEYSLVLMDEIGRGTSTYD  137 (234)
T ss_dssp             ----------------------------------------------CHHHHHHHHHHHHHCCTTEEEEEESCCCCSSSSH
T ss_pred             CCCH----------------------------------------HHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf             3653----------------------------------------189999999999997454660885322235877456


Q ss_pred             HHHHHH-HHHHHHHC-CCEEEEEECCCC
Q ss_conf             999999-99998739-968999947986
Q 005545          273 AQRIVA-TLRGLARG-GRTVITTIHQPS  298 (691)
Q Consensus       273 ~~~i~~-~L~~l~~~-g~tii~~~H~p~  298 (691)
                      ...+.. .+..+..+ +..+++++|...
T Consensus       138 g~~l~~a~l~~l~~~~~~~~i~tTH~~~  165 (234)
T d1wb9a2         138 GLSLAWACAENLANKIKALTLFATHYFE  165 (234)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCHHH
T ss_conf             6678987645432045442898524687

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.79  E-value=0.00069  Score=39.80  Aligned_cols=159  Identities=18%  Similarity=0.175  Sum_probs=74.6

Q ss_pred             CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf             12551279993881999986999858999999982989997209999997279101254899915897899999999999
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS  193 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~  193 (691)
                      .-|+++.+=+.+|+++.|.|++|+|||||+.-++-..... .|              ..+.|+.-      .++..+...
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~-~g--------------~~v~~~s~------E~~~~~~~~   81 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA-MG--------------KKVGLAML------EESVEETAE   81 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHT-SC--------------CCEEEEES------SSCHHHHHH
T ss_pred             HHHHHHHCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-CC--------------CCEEEEEE------CCCHHHHHH
T ss_conf             6688874697898089999479997999999999726553-36--------------63457640------111135776


Q ss_pred             -HHHH-HCCCCCCCHHHH-----HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf             -9776-149988999999-----999999999909974235532488776559899999999999831998799919999
Q 005545          194 -YAAL-LRLPKKLTREEK-----IEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTS  266 (691)
Q Consensus       194 -~~a~-~~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPts  266 (691)
                       +.+. ...+.......+     ..+.+++.+.+.-.......   .........+.....-...--.+|+++++|-..-
T Consensus        82 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~vvID~l~~  158 (277)
T d1cr2a_          82 DLIGLHNRVRLRQSDSLKREIIENGKFDQWFDELFGNDTFHLY---DSFAEAETDRLLAKLAYMRSGLGCDVIILDHISI  158 (277)
T ss_dssp             HHHHHHTTCCGGGCHHHHHHHHHTSHHHHHHHHHHSSSCEEEE---CCC-CCCHHHHHHHHHHHHHTTCCSEEEEEEEEC
T ss_pred             HHHHHHHCCCCHHHCCCCCCHHHHHHHHHHHHHHHCCCEEEEE---CCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf             9999864587101012222214567788898874035214662---1433106899999865432136762599705421


Q ss_pred             -----CC--CHHHHHHHHHHHHHHHHC-CCEEEEEECC
Q ss_conf             -----99--999999999999998739-9689999479
Q 005545          267 -----GL--DSTTAQRIVATLRGLARG-GRTVITTIHQ  296 (691)
Q Consensus       267 -----gL--D~~~~~~i~~~L~~l~~~-g~tii~~~H~  296 (691)
                           +-  +.....+++..|++++++ +.+|+++.|-
T Consensus       159 l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~  196 (277)
T d1cr2a_         159 VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL  196 (277)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEECCC
T ss_conf             20346544306778999999999765016552031035

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=7.4e-05  Score=46.00  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=28.5

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             881999986999858999999982989997209999
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY  160 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~  160 (691)
                      +|+..+++|+||.|||||+|.|.+... -..|+|.-
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~-~~T~~vs~  128 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK-LRVSEVSE  128 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC-CC------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHHH-HHCCCCCC
T ss_conf             698089978898778888773053555-01068420

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.0041  Score=34.79  Aligned_cols=154  Identities=18%  Similarity=0.178  Sum_probs=76.2

Q ss_pred             CCEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHH
Q ss_conf             41255127999388199998699985899999998298999720999999727910125489991589789999999999
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETL  192 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L  192 (691)
                      ..++.+    +.||+++.|.|++|+|||||+--|+-.+.   +|.=.+ +...  .....+-|+.-++..   -.+.+.+
T Consensus        20 d~li~G----~~pg~~~~i~G~~G~GKS~l~l~la~~ia---~g~~~~-~~~~--~~~~~vl~~~~E~~~---~~~~~Rl   86 (274)
T d1nlfa_          20 DYVLPN----MVAGTVGALVSPGGAGKSMLALQLAAQIA---GGPDLL-EVGE--LPTGPVIYLPAEDPP---TAIHHRL   86 (274)
T ss_dssp             CEEETT----EETTSEEEEEESTTSSHHHHHHHHHHHHH---TCCCTT-CCCC--CCCCCEEEEESSSCH---HHHHHHH
T ss_pred             HHHHCC----CCCCCEEEEEECCCCCHHHHHHHHHHHHH---CCCCCC-CCCC--CCCCCEEEEECCCHH---HHHHHHH
T ss_conf             898689----55895899992899989999999999997---699721-1123--578736898512349---9999999


Q ss_pred             HHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC-----
Q ss_conf             997761499889999999999999999099742355324887765598999999999998319987999199999-----
Q 005545          193 SYAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSG-----  267 (691)
Q Consensus       193 ~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsg-----  267 (691)
                      .  +..   ........    ......+.+....+...     ....-   ..+.-......+++++++|.-+.-     
T Consensus        87 ~--~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~~~---~~~~~~~~~~~~~~lvviD~l~~~~~~~~  149 (274)
T d1nlfa_          87 H--ALG---AHLSAEER----QAVADGLLIQPLIGSLP-----NIMAP---EWFDGLKRAAEGRRLMVLDTLRRFHIEEE  149 (274)
T ss_dssp             H--HHH---TTSCHHHH----HHHHHHEEECCCTTSCC-----CTTSH---HHHHHHHHHHTTCSEEEEECGGGGCCSCT
T ss_pred             H--HHH---HCCCHHHH----HCCCCCCEECCCCCCCC-----HHHHH---HHHHHHHHHCCCCCEEECCCHHHHCCCCC
T ss_conf             9--986---23686665----31233323214567420-----35789---99999887526765896281354226652


Q ss_pred             CCHHHHHHHHHHHHHHHH-CCCEEEEEECC
Q ss_conf             999999999999999873-99689999479
Q 005545          268 LDSTTAQRIVATLRGLAR-GGRTVITTIHQ  296 (691)
Q Consensus       268 LD~~~~~~i~~~L~~l~~-~g~tii~~~H~  296 (691)
                      -|.....++++.|+.+++ .+.+++++.|.
T Consensus       150 ~~~~~~~~~~~~l~~la~~~~~~vi~v~H~  179 (274)
T d1nlfa_         150 NASGPMAQVIGRMEAIAADTGCSIVFLHHA  179 (274)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEHHHHC
T ss_conf             322568999988777764479754013100

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.15  E-value=0.00015  Score=44.12  Aligned_cols=25  Identities=36%  Similarity=0.735  Sum_probs=23.1

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8199998699985899999998298
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      |.++.|+||||||||||++.|..+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             7499998999999999999998458

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.14  E-value=0.00018  Score=43.53  Aligned_cols=36  Identities=33%  Similarity=0.517  Sum_probs=27.9

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCE
Q ss_conf             881999986999858999999982989997209999997
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR  163 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~  163 (691)
                      .|+++.|.||+||||||+.+.|+.++.   .--+.+++.
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~lg---~~~~~~~~d   38 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLPG---VPKVHFHSD   38 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEECTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHC---CCEEEECHH
T ss_conf             985999988999988999999999959---997990689

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.0068  Score=33.41  Aligned_cols=26  Identities=42%  Similarity=0.632  Sum_probs=21.5

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +..-+.+.||+|+|||++.+.|+...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~   69 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEA   69 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCCCHHHHHHHHHC
T ss_conf             88867866899888228999999982

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00028  Score=42.31  Aligned_cols=28  Identities=25%  Similarity=0.570  Sum_probs=23.0

Q ss_pred             EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf             7999388199998699985899999998
Q 005545          120 SGMVKPGELLAMLGPSGSGKTTLLTALA  147 (691)
Q Consensus       120 s~~i~~Ge~~aiiGpsGsGKSTLl~~L~  147 (691)
                      .+.+.++.+++|+|||||||||++.+|.
T Consensus        19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          19 KVGFGESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEECCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf             9758999989999999998899999999

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.0003  Score=42.12  Aligned_cols=23  Identities=57%  Similarity=0.639  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +++|+|++|||||||++.|...+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l   26 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPAL   26 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89999189998999999999999

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.91  E-value=8.5e-05  Score=45.63  Aligned_cols=35  Identities=31%  Similarity=0.485  Sum_probs=28.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf             881999986999858999999982989997209999
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITY  160 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~  160 (691)
                      +|...+++|+||.|||||+|.|.|.. .-..|+|.-
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~-~~~t~~vs~  130 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISE  130 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC------------
T ss_pred             CCCEEEEECCCCCCHHHHHHHHCCHH-HHHHCCCCC
T ss_conf             35649998778734878987515176-764035553

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.00038  Score=41.44  Aligned_cols=26  Identities=38%  Similarity=0.627  Sum_probs=23.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .|.++.|+||||+|||||.+.|.-+.
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             98099999999999999999998639

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.81  E-value=0.00045  Score=40.97  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             388199998699985899999998298
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ..|.++.|+|++||||||+.+.|+-++
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             997699988999999999999999998

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.79  E-value=0.00047  Score=40.83  Aligned_cols=27  Identities=30%  Similarity=0.562  Sum_probs=24.1

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             388199998699985899999998298
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.+.++.|+||+||||||+.+.|+.++
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             987189998999989899999999986

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.74  E-value=0.0054  Score=34.02  Aligned_cols=23  Identities=43%  Similarity=0.696  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -+.+.||+|+|||+|.+++++..
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC
T ss_conf             48876689888359999999873

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=96.60  E-value=0.00081  Score=39.34  Aligned_cols=27  Identities=30%  Similarity=0.524  Sum_probs=23.6

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             388199998699985899999998298
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ++|-.+.|.||+||||||+.+.|+.++
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             998889998289998899999999985

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.58  E-value=0.0006  Score=40.16  Aligned_cols=35  Identities=26%  Similarity=0.331  Sum_probs=24.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEEEC
Q ss_conf             1999986999858999999982989--9972099999
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLR--GKFSGKITYN  161 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~~--~~~~G~I~~~  161 (691)
                      .+++|+|++|||||||++-|..++.  +..-|.|..+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d   38 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   38 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEC
T ss_conf             0999980999989999999999998679837999831

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=3.1e-05  Score=48.43  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             255127999388199998699985899999998298
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -+++.++.+.+| ++.|+|||||||||++++|.-.+
T Consensus        14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             CEEEEEEECCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             870279974998-08998899998799999999996

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.00074  Score=39.57  Aligned_cols=24  Identities=38%  Similarity=0.591  Sum_probs=21.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ..++|.||+|+|||||.+.|+.++
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             289998999998999999999984

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.51  E-value=0.00078  Score=39.43  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ..+++.|.|++||||||+.+.|+.++
T Consensus         2 ~~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           2 TTRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             98599998999999899999999972

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.48  E-value=0.00088  Score=39.09  Aligned_cols=24  Identities=46%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++||-||+|||||||.+.|+-++
T Consensus        23 ~iIgI~G~~GSGKSTla~~L~~~l   46 (198)
T d1rz3a_          23 LVLGIDGLSRSGKTTLANQLSQTL   46 (198)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             899978988789999999999983

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.0025  Score=36.21  Aligned_cols=23  Identities=30%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -+|++|++|+|||||++.|.|..
T Consensus        10 kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999997787

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.37  E-value=0.0011  Score=38.54  Aligned_cols=23  Identities=30%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|+|++|+|||||+|.|.|..
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~   47 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRK   47 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99998999987999999852987

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0008  Score=39.35  Aligned_cols=26  Identities=42%  Similarity=0.475  Sum_probs=23.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .|.++.|.|++||||||+.+.|+-++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l   43 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYL   43 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99699988999999999999999999

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.29  E-value=0.0015  Score=37.52  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=24.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEE
Q ss_conf             19999869998589999999829899972099999972
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQ  164 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~  164 (691)
                      +++.|.|++|||||||.+.|....    .|...++..+
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~----~~~~~~~~d~   36 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDD   36 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC----CCCEEECHHH
T ss_conf             799998999999999999999957----9979960399

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=96.29  E-value=0.0013  Score=38.06  Aligned_cols=22  Identities=41%  Similarity=0.572  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.|+||+||||||+.+.|+-++
T Consensus         7 I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9898999999899999999997

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=96.27  E-value=0.0016  Score=37.45  Aligned_cols=32  Identities=34%  Similarity=0.568  Sum_probs=24.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             199998699985899999998298999720999999
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG  162 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G  162 (691)
                      .++.|.||+||||||+.+.|+..+    .+.+.++|
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~----~~~~~~~~   34 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL----DNSAYIEG   34 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS----SSEEEEEH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHC----CCCEEEEH
T ss_conf             089998999999899999999980----99889830

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0015  Score=37.53  Aligned_cols=51  Identities=20%  Similarity=0.254  Sum_probs=32.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHH
Q ss_conf             999986999858999999982989997209999997279101254899915897899999999
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLE  190 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E  190 (691)
                      ++||-|++||||||+.+.|+..+...           ........+..+.+|+.+. ...-.+
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~~~-----------~~~~~~~~~~vi~~D~yy~-~~~~~~   54 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLGQN-----------EVDYRQKQVVILSQDSFYR-VLTSEQ   54 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGG-----------GSCGGGCSEEEEEGGGGBC-CCCHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCHH-----------CCCCCCCCEEEEECCCCCC-CCCHHH
T ss_conf             99998999787999999999996410-----------1345788439993465322-440222

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0017  Score=37.21  Aligned_cols=24  Identities=25%  Similarity=0.509  Sum_probs=21.0

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ..+.|+||||+||+||++-|..+.
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHC
T ss_conf             719999989999999999999709

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.23  E-value=0.0017  Score=37.25  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.7

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8199998699985899999998298
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ..++.|+||+||||||+.+.|+..+
T Consensus         6 p~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9489998999998899999999997

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.23  E-value=0.0016  Score=37.42  Aligned_cols=21  Identities=38%  Similarity=0.676  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      +++|+|+.|||||||++.|..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             899991899839999999999

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0016  Score=37.49  Aligned_cols=22  Identities=45%  Similarity=0.786  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.|+|||||||+||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
T ss_conf             9998999999899999999748

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.10  E-value=0.032  Score=29.05  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=78.2

Q ss_pred             EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHC
Q ss_conf             79993881999986999858999999982989997209999997279101254899915897899999999999977614
Q 005545          120 SGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLR  199 (691)
Q Consensus       120 s~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~  199 (691)
                      .+=+++|+++.|.|++|+|||||+.-++-..... .+               .+.|+.-+      .+..+.........
T Consensus        20 ~GGi~~gsl~li~G~pGsGKT~l~~qia~~~~~~-~~---------------~~~~is~e------~~~~~~~~~~~~~~   77 (242)
T d1tf7a2          20 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE---------------RAILFAYE------ESRAQLLRNAYSWG   77 (242)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC---------------CEEEEESS------SCHHHHHHHHHTTS
T ss_pred             CCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHH-CC---------------CCCEEECC------CCHHHHHHHHHHCC
T ss_conf             6898698499999189999999999999999872-32---------------44112126------79999999999829


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHCCCEEEEECCCC---CCCHHHHHH
Q ss_conf             9988999999999999999909974235532488776559899999999999-831998799919999---999999999
Q 005545          200 LPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQE-MLVNPSCLLLDEPTS---GLDSTTAQR  275 (691)
Q Consensus       200 ~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~a-L~~~P~illlDEPts---gLD~~~~~~  275 (691)
                          ....+        +...+.....+...     ......+. .-.|... --.+|++++.|--+.   +.+......
T Consensus        78 ----~~~~~--------~~~~~~~~~~~~~~-----~~~~~~~~-~~~i~~~i~~~~~~~vviDs~~~~~~~~~~~~~~~  139 (242)
T d1tf7a2          78 ----MDFEE--------MERQNLLKIVCAYP-----ESAGLEDH-LQIIKSEINDFKPARIAIDSLSALARGVSNNAFRQ  139 (242)
T ss_dssp             ----CCHHH--------HHHTTSEEECCCCG-----GGSCHHHH-HHHHHHHHHTTCCSEEEEECHHHHTSSSCHHHHHH
T ss_pred             ----CCHHH--------HHHCCCEEEEEEEC-----CHHHHHHH-HHHHHHHHHHCCCCEEEEECCHHHHCCCCHHHHHH
T ss_conf             ----98699--------85458617997300-----01017999-99999999840885332204314304899999999


Q ss_pred             HHHHHHHHHH-CCCEEEEEECCC---------CHHHHHCCCEEEEEC
Q ss_conf             9999999873-996899994798---------668985078799960
Q 005545          276 IVATLRGLAR-GGRTVITTIHQP---------SSRLYRMFDKVVVLS  312 (691)
Q Consensus       276 i~~~L~~l~~-~g~tii~~~H~p---------~~~i~~~~D~v~vL~  312 (691)
                      .+..+.++++ .+.+++++.|..         ...+...+|-++.|.
T Consensus       140 ~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~  186 (242)
T d1tf7a2         140 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ  186 (242)
T ss_dssp             HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCEEEECCEEEEEE
T ss_conf             99999999998698399998567512554457764046421699999

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0019  Score=36.93  Aligned_cols=22  Identities=45%  Similarity=0.718  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.|+||||||||||.+.|+...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHC
T ss_conf             9999999999999999999748

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.06  E-value=0.0022  Score=36.51  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+++|.|++||||||+.+.|+.++
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l   25 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNL   25 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             889998999989899999999999

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0016  Score=37.41  Aligned_cols=25  Identities=36%  Similarity=0.593  Sum_probs=21.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             1999986999858999999982989
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLR  151 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~~  151 (691)
                      ..+.|.||+|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             6999988999719999999999999

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0024  Score=36.28  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=21.8

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8199998699985899999998298
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -.++.|+||+||||||+.+.|+..+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             7289998999999899999999985

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.0022  Score=36.52  Aligned_cols=23  Identities=39%  Similarity=0.657  Sum_probs=20.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.|+||+||||||+.+.|+-++
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             49998999999999999999996

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.99  E-value=0.0034  Score=35.35  Aligned_cols=23  Identities=43%  Similarity=0.615  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|+|++|+|||||++.|.+..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999988999999996799

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.92  E-value=0.0027  Score=35.93  Aligned_cols=23  Identities=35%  Similarity=0.573  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|.||+||||||+.+.|+..+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~l   27 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDF   27 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99978999879899999999996

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0038  Score=35.00  Aligned_cols=30  Identities=30%  Similarity=0.459  Sum_probs=26.4

Q ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             999388199998699985899999998298
Q 005545          121 GMVKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       121 ~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      |-+++|+++.|.||+|+|||||+.-++...
T Consensus        18 GGi~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          18 GGIETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             898599799999589999999999999999

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.89  E-value=0.0015  Score=37.71  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +||+|++++|||||+|.|+|.
T Consensus         4 VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEE
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899998799999999689

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=95.89  E-value=0.0033  Score=35.39  Aligned_cols=27  Identities=37%  Similarity=0.556  Sum_probs=22.8

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             388199998699985899999998298
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ++|--+.|+||+||||||+.+.|+.++
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             996389998999998899999999986

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.83  E-value=0.0021  Score=36.65  Aligned_cols=27  Identities=26%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             388199998699985899999998298
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.+.++.|+||+||||||+.+.|+..+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             678289998999998799999999986

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.83  E-value=0.0034  Score=35.36  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++++|++|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999998999999996777

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0029  Score=35.73  Aligned_cols=23  Identities=35%  Similarity=0.577  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -+||+|.+|+|||||+|.|.|..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             79998999997899999995888

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0055  Score=33.98  Aligned_cols=44  Identities=16%  Similarity=0.261  Sum_probs=29.1

Q ss_pred             HCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf             1998799919999999999999999999987399689999479866
Q 005545          254 VNPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       254 ~~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      .+.+++++||.-. |....+..+.+.+..-. ....+|++++++..
T Consensus       130 ~~~~iiiide~d~-l~~~~~~~l~~~~e~~~-~~~~~Il~tn~~~~  173 (252)
T d1sxje2         130 HRYKCVIINEANS-LTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP  173 (252)
T ss_dssp             -CCEEEEEECTTS-SCHHHHHHHHHHHHHST-TTEEEEEEESCSCS
T ss_pred             CCCEEEEECCCCC-CCCCCCHHHHCCCCCCC-CCCCCEEEECCCCC
T ss_conf             8724999424333-45431112210022135-66430001021110

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.81  E-value=0.0027  Score=36.00  Aligned_cols=23  Identities=22%  Similarity=0.294  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998899999899999999987

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.80  E-value=0.0027  Score=35.99  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|+|++|+|||||+|.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999988999999996898

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0036  Score=35.20  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ++.|+||+||||||..+.|+..+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99997999999899999999986

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.76  E-value=0.0038  Score=35.04  Aligned_cols=23  Identities=39%  Similarity=0.632  Sum_probs=21.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|+|++|+|||||++.|.|..
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999999999999996888

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.0039  Score=34.93  Aligned_cols=22  Identities=41%  Similarity=0.755  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      .++++|.+|+|||||+|.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999979999899999999589

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=95.73  E-value=0.0034  Score=35.34  Aligned_cols=22  Identities=50%  Similarity=0.687  Sum_probs=19.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.|+|++||||||+.+.|+.++
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998999998899999999983

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0037  Score=35.09  Aligned_cols=45  Identities=24%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCC
Q ss_conf             19999869998589999999829899972099999972791012548999158978999
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPH  185 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~  185 (691)
                      =++||-|++||||||+.+.|...+....              ....+..+.+|+.+.+.
T Consensus        81 ~iIGIaG~sgSGKSTla~~L~~lL~~~~--------------~~~~v~~Is~D~F~~~~  125 (308)
T d1sq5a_          81 YIISIAGSVAVGKSTTARVLQALLSRWP--------------EHRRVELITTDGFLHPN  125 (308)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHTTST--------------TCCCEEEEEGGGGBCCH
T ss_pred             EEEEEECCCCCCCCHHHHHHHHHHHHHC--------------CCCCEEEEEEEEEECCC
T ss_conf             8999968999987689999999973046--------------89965999521568984

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.65  E-value=0.0039  Score=34.93  Aligned_cols=34  Identities=26%  Similarity=0.361  Sum_probs=25.4

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             8199998699985899999998298999720999999
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG  162 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G  162 (691)
                      ...+.+.||+|+|||||.+.|++.+.   .+-+.+|+
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~---~~~~~i~~   65 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ---GNVIVIDN   65 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT---TCCEEECT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH---CCEEEEEC
T ss_conf             97999889799889999999999865---15489832

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=95.63  E-value=0.0034  Score=35.36  Aligned_cols=23  Identities=39%  Similarity=0.492  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.++|++||||||+.+.|+-++
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
T ss_conf             88998899998899999999994

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.62  E-value=0.0037  Score=35.08  Aligned_cols=23  Identities=22%  Similarity=0.557  Sum_probs=21.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|+|.+|+|||||+|.|.|+.
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89998999986999999985898

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.58  E-value=0.0052  Score=34.14  Aligned_cols=43  Identities=26%  Similarity=0.315  Sum_probs=31.2

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCCCC-CCCEEEEECCEECC
Q ss_conf             38819999869998589999999829899-97209999997279
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLRG-KFSGKITYNGRQFS  166 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~-~~~G~I~~~G~~~~  166 (691)
                      +.|.++-+.|.|||||||+.+.|.-++.. ...-.+.++|..+.
T Consensus        22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR   65 (208)
T d1m7ga_          22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR   65 (208)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEECCHHHH
T ss_conf             99869999899999989999999988777427508997536788

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.55  E-value=0.0032  Score=35.46  Aligned_cols=121  Identities=21%  Similarity=0.315  Sum_probs=63.4

Q ss_pred             EEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf             27999388199998699985899999998298999720999999727910125489991589789999999999997761
Q 005545          119 VSGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALL  198 (691)
Q Consensus       119 vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~  198 (691)
                      +..-++.|.-+.|.|+.|||||||+++|.+.. ++..--|.+..                .+-+.              +
T Consensus       159 l~~~v~~~~nili~G~tgSGKTT~l~al~~~i-~~~~rivtiEd----------------~~El~--------------l  207 (323)
T d1g6oa_         159 IKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFI-PKEERIISIED----------------TEEIV--------------F  207 (323)
T ss_dssp             HHHHHHHTCCEEEEESTTSSHHHHHHHHGGGS-CTTCCEEEEES----------------SCCCC--------------C
T ss_pred             HHHHHHHCCCEEEEEECCCCCHHHHHHHHHHC-CCCCCEEECCC----------------HHHHH--------------C
T ss_conf             99999837888999403566257899986530-14562331132----------------26551--------------1


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
Q ss_conf             49988999999999999999909974235532488776559899999999999831998799919999999999999999
Q 005545          199 RLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVA  278 (691)
Q Consensus       199 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~  278 (691)
                      ..+...               ..+.      .+    .+++-.+    .+-.+|-.+|+.++++|--..   .+    ..
T Consensus       208 ~~~~~~---------------~~~~------~~----~~~~~~~----ll~~~lR~~pd~iivgEiR~~---ea----~~  251 (323)
T d1g6oa_         208 KHHKNY---------------TQLF------FG----GNITSAD----CLKSCLRMRPDRIILGELRSS---EA----YD  251 (323)
T ss_dssp             SSCSSE---------------EEEE------CB----TTBCHHH----HHHHHTTSCCSEEEESCCCST---HH----HH
T ss_pred             CCCCCC---------------CEEC------CC----CCHHHHH----HHHHHHCCCCCCCCCCCCCCH---HH----HH
T ss_conf             112454---------------1001------46----5424999----999974349985457866746---59----99


Q ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHCCCEE
Q ss_conf             999987399689999479866898507879
Q 005545          279 TLRGLARGGRTVITTIHQPSSRLYRMFDKV  308 (691)
Q Consensus       279 ~L~~l~~~g~tii~~~H~p~~~i~~~~D~v  308 (691)
                      .++.+...+.-++.|+|-.+.  ....+|+
T Consensus       252 ~l~a~~tGh~g~~tT~Ha~s~--~~a~~Rl  279 (323)
T d1g6oa_         252 FYNVLCSGHKGTLTTLHAGSS--EEAFIRL  279 (323)
T ss_dssp             HHHHHHTTCSCEEEEECCSSH--HHHHHHH
T ss_pred             HHHHHHHCCCCEEEEECCCCH--HHHHHHH
T ss_conf             999998169857998787999--9999999

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=95.53  E-value=0.0052  Score=34.12  Aligned_cols=25  Identities=44%  Similarity=0.692  Sum_probs=21.7

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8199998699985899999998298
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      |=-++++|++|+|||||++.|.|..
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf             9899998999998999999996888

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.005  Score=34.23  Aligned_cols=23  Identities=48%  Similarity=0.751  Sum_probs=21.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +++|.||+||||+|+.+.|+.++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~   27 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEAL   27 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89977999889899999999996

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.51  E-value=0.0045  Score=34.57  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.|+||+||||||+.+.|+..+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998899999899999999987

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.0046  Score=34.49  Aligned_cols=27  Identities=33%  Similarity=0.426  Sum_probs=22.9

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             388199998699985899999998298
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ...-.+||.||.|||||||++.|...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             983289743899998999999999999

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.0055  Score=33.99  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++.++|.+|||||||.+.|+..+
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             899998999999999999999999

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0028  Score=35.83  Aligned_cols=21  Identities=29%  Similarity=0.602  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +||+|.+++|||||++.|.|.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999899999899999999689

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.37  E-value=0.0053  Score=34.10  Aligned_cols=22  Identities=41%  Similarity=0.563  Sum_probs=19.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.++|++||||||+.+.|+.++
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             8998899998899999999984

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.33  E-value=0.006  Score=33.76  Aligned_cols=25  Identities=24%  Similarity=0.380  Sum_probs=21.1

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             3881999986999858999999982
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      +.-+++.++|++||||||+.+-++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9998999989999989999999997

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=95.32  E-value=0.0054  Score=34.03  Aligned_cols=22  Identities=32%  Similarity=0.530  Sum_probs=19.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHC
Q ss_conf             1999986999858999999982
Q 005545          127 ELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -++||.|++||||||+.+.|.-
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
T ss_conf             8999989887789999999998

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0037  Score=35.12  Aligned_cols=26  Identities=19%  Similarity=0.245  Sum_probs=23.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.+++|-|+.||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99889998788877999999999997

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.26  E-value=0.0039  Score=34.97  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=21.1

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++.|.|++||||||+.+.|+.++
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             199998989989899999999999

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=95.22  E-value=0.0071  Score=33.28  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.|+||+||||||+.+.|+.++
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899998799999999987

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.18  E-value=0.0051  Score=34.17  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -+++|-|+.||||||+++.|+..+
T Consensus        10 ~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1          10 FTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             199988999988899999999870

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.17  E-value=0.0068  Score=33.38  Aligned_cols=23  Identities=43%  Similarity=0.693  Sum_probs=20.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -+.|+||+||||||+.+.|+..+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998899999799999999998

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.14  E-value=0.0078  Score=33.00  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=22.4

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             38819999869998589999999829
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ...-.++|.||.|+|||||++.|...
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~   74 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSL   74 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             98159861179988899999999998

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.14  E-value=0.0078  Score=33.02  Aligned_cols=27  Identities=30%  Similarity=0.457  Sum_probs=23.9

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             388199998699985899999998298
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.|.+++|-|+.||||||+.+.|...+
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L   27 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEAL   27 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             980599998998889999999999999

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.13  E-value=0.0064  Score=33.57  Aligned_cols=26  Identities=35%  Similarity=0.534  Sum_probs=21.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      |+.-+.+.||+|+|||.|.++|+...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~   73 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLA   73 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             98669998999988889999986213

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.13  E-value=0.0043  Score=34.69  Aligned_cols=22  Identities=45%  Similarity=0.593  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++|+|++|+|||||++.|.+.
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999998989999999678

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.12  E-value=0.0031  Score=35.61  Aligned_cols=39  Identities=21%  Similarity=0.358  Sum_probs=28.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCC
Q ss_conf             9999869998589999999829899972099999972791012548999158978
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVL  182 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l  182 (691)
                      ++||-|+|||||||+.+.|...+. . .              .-....+.+|+.+
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~-~-~--------------~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR-R-E--------------GVKAVSIEGDAFH   44 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH-H-H--------------TCCEEEEEGGGGB
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH-H-C--------------CCCEEEEECCCCC
T ss_conf             999989997809999999999971-5-6--------------9976999477787

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=95.11  E-value=0.0073  Score=33.21  Aligned_cols=23  Identities=30%  Similarity=0.538  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.|+||+||||||+.+.|+.++
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             69998899998799999999997

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.05  E-value=0.023  Score=29.96  Aligned_cols=35  Identities=29%  Similarity=0.316  Sum_probs=27.6

Q ss_pred             CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             125512799938819999869998589999999829
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ..++.....+ .|.-+.+.|+||+|||||.-.|..+
T Consensus         4 ~~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2           4 AQIHGVLLEV-FGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHC
T ss_conf             3178999999-9999999818999989999999985

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.02  E-value=0.0074  Score=33.18  Aligned_cols=23  Identities=43%  Similarity=0.521  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++++|++|+|||||++.|.+..
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999999999999995899

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.01  E-value=0.079  Score=26.55  Aligned_cols=165  Identities=19%  Similarity=0.091  Sum_probs=76.3

Q ss_pred             EEECE-EEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf             25512-79993881999986999858999999982989997209999997279101254899915897899999999999
Q 005545          115 VLNGV-SGMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS  193 (691)
Q Consensus       115 iL~~v-s~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~  193 (691)
                      -|+++ ++=+++|+++.|.|++|+|||+|+--++......-..               .+.|+.-+      .+..+...
T Consensus        14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~---------------~~~~~s~e------~~~~~~~~   72 (242)
T d1tf7a1          14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDE---------------PGVFVTFE------ETPQDIIK   72 (242)
T ss_dssp             THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCC---------------CEEEEESS------SCHHHHHH
T ss_pred             HHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCC---------------CCCCCCCC------CCHHHHHH
T ss_conf             7988556899698399999479999999999999999985688---------------74201266------79999999


Q ss_pred             HHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH-HHHHHHHHH--HCCCEEEEECCCCCC--
Q ss_conf             977614998899999999999999990997423553248877655989999-999999983--199879991999999--
Q 005545          194 YAALLRLPKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERK-RVSIGQEML--VNPSCLLLDEPTSGL--  268 (691)
Q Consensus       194 ~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerq-Rv~Ia~aL~--~~P~illlDEPtsgL--  268 (691)
                      ......    ....       +.++.............. .....+..... -+.-...++  .+|++++.|--+.-.  
T Consensus        73 ~~~~~~----~~~~-------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~i~~~~~~~viiD~~~~l~~~  140 (242)
T d1tf7a1          73 NARSFG----WDLA-------KLVDEGKLFILDASPDPE-GQEVVGGFDLSALIERINYAIQKYRARRVSIDSVTSVFQQ  140 (242)
T ss_dssp             HHGGGT----CCHH-------HHHHTTSEEEEECCCCSS-CCSCCSSHHHHHHHHHHHHHHHHHTCSEEEEECSTTTSTT
T ss_pred             HHHHCC----CCHH-------HHHHHCCHHHHHHCCCHH-HHHHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf             999849----9848-------988714302444210335-4444302458999999999988631222002078899876


Q ss_pred             --CHHHHHHHHHHHHHH-HHCCCEEEEEECCCCH--------HHHHCCCEEEEEC
Q ss_conf             --999999999999998-7399689999479866--------8985078799960
Q 005545          269 --DSTTAQRIVATLRGL-ARGGRTVITTIHQPSS--------RLYRMFDKVVVLS  312 (691)
Q Consensus       269 --D~~~~~~i~~~L~~l-~~~g~tii~~~H~p~~--------~i~~~~D~v~vL~  312 (691)
                        +.....+++..+.+. ++.+.+++++.|....        .....+|.++.+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~  195 (242)
T d1tf7a1         141 YDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR  195 (242)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCEEEECCEEEEEE
T ss_conf             0572678999999999998639716884210255422246762335362999988

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=0.0073  Score=33.21  Aligned_cols=23  Identities=22%  Similarity=0.317  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.|+||+||||||..+.|+-++
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998799999899999999986

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.99  E-value=0.0085  Score=32.79  Aligned_cols=23  Identities=30%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++|+|++|+|||||++.|.+..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89999999989899999998099

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=94.99  E-value=0.0076  Score=33.09  Aligned_cols=21  Identities=38%  Similarity=0.502  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +.++|++|+|||||++-+.+.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999999998989999999659

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.92  E-value=0.0081  Score=32.91  Aligned_cols=22  Identities=41%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ++++|.+|+|||||++.+.+..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9999999989999999996798

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.92  E-value=0.0095  Score=32.47  Aligned_cols=28  Identities=36%  Similarity=0.547  Sum_probs=24.1

Q ss_pred             EEEEECCEEEEEECCCCCCHHHHHHHHH
Q ss_conf             7999388199998699985899999998
Q 005545          120 SGMVKPGELLAMLGPSGSGKTTLLTALA  147 (691)
Q Consensus       120 s~~i~~Ge~~aiiGpsGsGKSTLl~~L~  147 (691)
                      .|=+++|+++.|.||+|+|||||.--++
T Consensus        30 ~GGlp~G~~~li~G~pGsGKT~~~lq~~   57 (254)
T d1pzna2          30 GGGIETQAITEVFGEFGSGKTQLAHTLA   57 (254)
T ss_dssp             TSSEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             6995588799998589898899999999

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.90  E-value=0.01  Score=32.22  Aligned_cols=28  Identities=32%  Similarity=0.500  Sum_probs=25.0

Q ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             9993881999986999858999999982
Q 005545          121 GMVKPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       121 ~~i~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      |=+++|+++.|.||+|+|||||.--++-
T Consensus        29 GGi~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          29 GGVETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SSEESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9986996999983899988999999999

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=94.90  E-value=0.0083  Score=32.83  Aligned_cols=21  Identities=38%  Similarity=0.491  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +||+|+..+|||||++.|.+.
T Consensus         8 IaiiG~~naGKSTL~n~L~~~   28 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEI   28 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCHHHHHHHHHHH
T ss_conf             999907787099999999974

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=94.87  E-value=0.0094  Score=32.48  Aligned_cols=21  Identities=33%  Similarity=0.588  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++||.|+.||||||+.+++..
T Consensus         4 iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           4 IVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999888887889999999998

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.80  E-value=0.012  Score=31.81  Aligned_cols=23  Identities=39%  Similarity=0.546  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.+.||+|+||||++++++...
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             49998799998889999999998

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=94.77  E-value=0.011  Score=31.93  Aligned_cols=26  Identities=27%  Similarity=0.417  Sum_probs=23.4

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .|.++++-|+.||||||+.+.|+.++
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             98789998998887999999999999

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.72  E-value=0.011  Score=32.11  Aligned_cols=23  Identities=35%  Similarity=0.674  Sum_probs=19.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.|+||.||||||+.+.|+.++
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998999999899999999996

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=94.71  E-value=0.023  Score=29.94  Aligned_cols=35  Identities=26%  Similarity=0.265  Sum_probs=26.9

Q ss_pred             CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             125512799938819999869998589999999829
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ..++. +...-.|.-+.+.|+||+|||||.-.|..+
T Consensus         3 ~~lH~-~~v~~~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_           3 RSMHG-VLVDIYGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEE-EEEEETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CEEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf             32899-999999999999808999989999999985

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.70  E-value=0.012  Score=31.84  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=22.1

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+..+.|.||+|+|||||++-++...
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             59879998699982999999999977

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.68  E-value=0.012  Score=31.75  Aligned_cols=27  Identities=33%  Similarity=0.468  Sum_probs=24.5

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             881999986999858999999982989
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLR  151 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~~  151 (691)
                      .|.++++-|+.||||||+.+.|+.++.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             768999989988869999999999997

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.66  E-value=0.013  Score=31.65  Aligned_cols=51  Identities=27%  Similarity=0.397  Sum_probs=32.7

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHH
Q ss_conf             1999986999858999999982989997209999997279101254899915897899999999999
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLS  193 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~  193 (691)
                      =++||-|+.|||||||.+.|.-.+...             ......+..+..||..   +|-.|-..
T Consensus        28 ~iIGi~G~qGSGKSTl~~~l~~~L~~~-------------~~~~~~v~~iS~DdfY---~t~~~r~~   78 (286)
T d1odfa_          28 LFIFFSGPQGSGKSFTSIQIYNHLMEK-------------YGGEKSIGYASIDDFY---LTHEDQLK   78 (286)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHHH-------------HGGGSCEEEEEGGGGB---CCHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHH-------------HCCCCCEEEECCCCCC---CCHHHHHH
T ss_conf             899837998788999999999999987-------------2778606763567777---88899999

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.65  E-value=0.012  Score=31.89  Aligned_cols=26  Identities=35%  Similarity=0.653  Sum_probs=21.7

Q ss_pred             EECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             938819999869998589999999829
Q 005545          123 VKPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       123 i~~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +++. ++||+|...+|||||++.|.+.
T Consensus         3 ~r~p-~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           3 IRSP-IVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             ECCC-EEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCC-EEEEEECCCCCHHHHHHHHHHH
T ss_conf             8998-7999969985499999999823

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.65  E-value=0.012  Score=31.93  Aligned_cols=23  Identities=52%  Similarity=0.650  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.+.||+|+||||+.++++..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             69997899974879999999998

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.61  E-value=0.01  Score=32.25  Aligned_cols=23  Identities=43%  Similarity=0.598  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++++|++|+|||||++.|.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99999999989999999980899

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.0044  Score=34.59  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|+|++++|||||+|.|.+..
T Consensus        18 ~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          18 EVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             89998899998999999985898

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.46  E-value=0.019  Score=30.54  Aligned_cols=35  Identities=26%  Similarity=0.411  Sum_probs=27.9

Q ss_pred             EEC-EEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             551-27999388199998699985899999998298
Q 005545          116 LNG-VSGMVKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       116 L~~-vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      |++ +.+-+++|+++.|.|++|+|||||+.-++-..
T Consensus        23 LD~ll~GGl~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          23 LDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             HHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             HHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf             997207986288599999179999899999999999

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=0.017  Score=30.91  Aligned_cols=21  Identities=43%  Similarity=0.672  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++||.|+.||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999789886889999999998

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=94.22  E-value=0.016  Score=31.01  Aligned_cols=23  Identities=43%  Similarity=0.665  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.+.||+|+||||+.++|+...
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~   59 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASEL   59 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             48987999973889999998503

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.17  E-value=0.015  Score=31.15  Aligned_cols=23  Identities=26%  Similarity=0.379  Sum_probs=20.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++++|.+|+|||||++.|.+..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999989899999996688

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=94.17  E-value=0.016  Score=31.07  Aligned_cols=45  Identities=27%  Similarity=0.427  Sum_probs=31.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCC
Q ss_conf             99998699985899999998298999720999999727910125489991589
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDD  180 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~  180 (691)
                      =+.++||+|+|||-|.+.||+.+.-|   -+..+...     -...|||-.|-
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~-----fTeaGYvG~DV   95 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLANAP---FIKVEATK-----FTEVGYVGKEV   95 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGG-----GC----CCCCT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCC---EEEEECCE-----EEECCEEECCH
T ss_conf             47998999988999999999873898---89862551-----14111110444

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.02  Score=30.37  Aligned_cols=28  Identities=25%  Similarity=0.318  Sum_probs=25.0

Q ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             9993881999986999858999999982
Q 005545          121 GMVKPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       121 ~~i~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      +=+++|+++.|.||+|+|||+|.--++.
T Consensus        32 GGip~G~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          32 GGIESMAITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             9976897999988998878899999999

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=94.16  E-value=0.016  Score=31.09  Aligned_cols=23  Identities=35%  Similarity=0.455  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++++|++|+|||||++.+.+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             99999999989899999997197

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.10  E-value=0.018  Score=30.62  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      |-.-+.+.||+|+|||++.++|+...
T Consensus        39 p~~~vLL~GppGtGKT~la~alA~~~   64 (246)
T d1d2na_          39 PLVSVLLEGPPHSGKTALAAKIAEES   64 (246)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHCC
T ss_conf             98079988969998899999986201

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.04  E-value=0.018  Score=30.66  Aligned_cols=22  Identities=41%  Similarity=0.761  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.+-||+|+||||+.++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             9998999998499999999997

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=93.98  E-value=0.024  Score=29.94  Aligned_cols=26  Identities=31%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.+++++||+|+||||.+-=|+.+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             97799998999998899999999999

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=93.97  E-value=0.038  Score=28.63  Aligned_cols=34  Identities=29%  Similarity=0.281  Sum_probs=27.2

Q ss_pred             EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             25512799938819999869998589999999829
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      .++. ++..-.|.-+.+.|+||+|||||.-.|..+
T Consensus         5 ~~H~-~~v~~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2           5 SLHG-VLVDVYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEES-EEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEE-EEEEECCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf             4889-999999999999808999999999999984

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=93.91  E-value=0.019  Score=30.52  Aligned_cols=22  Identities=50%  Similarity=0.792  Sum_probs=19.4

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.+.||+|.||||+.+++++..
T Consensus        38 ~Ll~GPpG~GKTtla~~la~~~   59 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAHEL   59 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
T ss_conf             8988979987888999999984

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.89  E-value=0.018  Score=30.72  Aligned_cols=28  Identities=36%  Similarity=0.605  Sum_probs=22.9

Q ss_pred             EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9388199998699985899999998298
Q 005545          123 VKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       123 i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.+..-+.+.||+|+|||+|.+++++..
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             9988757887899876304778878771

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.84  E-value=0.0043  Score=34.70  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+++|||||+|.|.|.
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             8999999999999999999589

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.72  E-value=0.021  Score=30.23  Aligned_cols=21  Identities=33%  Similarity=0.531  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|++|+|||||++-+.+.
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999999991989999999739

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.67  E-value=0.022  Score=30.07  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=19.3

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ++++|++|+|||||++-+.+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~~   26 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVNDK   26 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9999999969899999997098

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=0.028  Score=29.42  Aligned_cols=34  Identities=29%  Similarity=0.564  Sum_probs=26.2

Q ss_pred             CEEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             1255127999388199998699985899999998298
Q 005545          114 SVLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       114 ~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+|+.++.   |=.+++|+||-++|||||||.|.|..
T Consensus        23 ~~l~~~~~---~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          23 KILSAITQ---PMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             HHHHTCCS---BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             HHHHCCCC---CEEEEEEECCCCCCHHHHHHHHCCCC
T ss_conf             99970799---87999988999997999999980998

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=93.57  E-value=0.013  Score=31.70  Aligned_cols=43  Identities=23%  Similarity=0.318  Sum_probs=30.6

Q ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCE
Q ss_conf             9993881999986999858999999982989997209999997
Q 005545          121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGR  163 (691)
Q Consensus       121 ~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~  163 (691)
                      +=+++|.++-+.||+|+|||||+--++.....+-.--++++..
T Consensus        49 GGi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          49 GGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             SSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf             9966735899805777478999999999987089879998654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.56  E-value=0.031  Score=29.18  Aligned_cols=26  Identities=31%  Similarity=0.363  Sum_probs=22.2

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             81999986999858999999982989
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRLR  151 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~~  151 (691)
                      ...+.|.||+|+||||+++.++..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             88168889899989999999999975

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.53  E-value=0.033  Score=29.02  Aligned_cols=26  Identities=35%  Similarity=0.562  Sum_probs=21.9

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      |...+.++||+|+|||.|.+.|+..+
T Consensus        51 p~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          51 PVGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             76589997787500699999998633

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.47  E-value=0.029  Score=29.31  Aligned_cols=23  Identities=43%  Similarity=0.759  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +++|-|.-||||||+++.|..++
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89998998789999999999999

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.023  Score=30.00  Aligned_cols=22  Identities=32%  Similarity=0.525  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|++|+|||||++-+.+.
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999997998999999999809

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.42  E-value=0.02  Score=30.40  Aligned_cols=22  Identities=45%  Similarity=0.643  Sum_probs=19.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|++|+|||||++.+.+.
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998999999999648

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.41  E-value=0.028  Score=29.45  Aligned_cols=24  Identities=33%  Similarity=0.578  Sum_probs=20.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .-+.+.||+|+|||+|.++++...
T Consensus        39 ~giLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCCHHHHHHHHHHH
T ss_conf             646876699888308999999874

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.39  E-value=0.026  Score=29.71  Aligned_cols=23  Identities=30%  Similarity=0.622  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++++|.-.||||||+|+|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             EEEEEECCCCCHHHHHHHHHCCC
T ss_conf             59998189897999999996899

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=93.34  E-value=0.044  Score=28.19  Aligned_cols=117  Identities=21%  Similarity=0.280  Sum_probs=66.5

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             38819999869998589999999829899972099999972791012548999158978999999999999776149988
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKK  203 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~  203 (691)
                      .+.-++.+.||.||||||.+..+...+..+ ..+|               --+ .||+-++.-.+.       ...    
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~-~~~i---------------~ti-EdPiE~~~~~~~-------q~~----  207 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELNSS-ERNI---------------LTV-EDPIEFDIDGIG-------QTQ----  207 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHCCT-TSCE---------------EEE-ESSCCSCCSSSE-------EEE----
T ss_pred             HHHCEEEEECCCCCCCCHHHHHHHHHHCCC-CCEE---------------EEE-CCCCCCCCCCCC-------EEE----
T ss_conf             410548987678777447799986662578-7469---------------996-267434567887-------026----


Q ss_pred             CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Q ss_conf             99999999999999990997423553248877655989999999999983199879991999999999999999999998
Q 005545          204 LTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDSTTAQRIVATLRGL  283 (691)
Q Consensus       204 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~~~~~~i~~~L~~l  283 (691)
                                        ...    .      .+.+    ---++..+|-.+|++++..|..   |..++...+    +.
T Consensus       208 ------------------v~~----~------~~~~----~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~----~a  248 (401)
T d1p9ra_         208 ------------------VNP----R------VDMT----FARGLRAILRQDPDVVMVGEIR---DLETAQIAV----QA  248 (401)
T ss_dssp             ------------------CBG----G------GTBC----HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHH----HH
T ss_pred             ------------------ECC----C------CCCC----HHHHHHHHHHHCCCEEEECCCC---CHHHHHHHH----HH
T ss_conf             ------------------558----7------6779----9999999984138889845768---759999999----99


Q ss_pred             HHCCCEEEEEECCCCHHHHHCCCEEE
Q ss_conf             73996899994798668985078799
Q 005545          284 ARGGRTVITTIHQPSSRLYRMFDKVV  309 (691)
Q Consensus       284 ~~~g~tii~~~H~p~~~i~~~~D~v~  309 (691)
                      +..|..|+.|.|-.+.  ....+|+.
T Consensus       249 a~tGhlV~tTlHa~~a--~~~~~Rl~  272 (401)
T d1p9ra_         249 SLTGHLVMSTLHTNTA--VGAVTRLR  272 (401)
T ss_dssp             HHTTCEEEEEECCSSS--HHHHHHHH
T ss_pred             HHCCCEEEEEECCCCH--HHHHHHHH
T ss_conf             7249858998336766--76654321

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=93.33  E-value=0.037  Score=28.67  Aligned_cols=29  Identities=24%  Similarity=0.358  Sum_probs=25.4

Q ss_pred             EEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99388199998699985899999998298
Q 005545          122 MVKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       122 ~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ..++|.++++-|+=|||||||.+.++.-+
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHC
T ss_conf             57998299996687765889999987642

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.28  E-value=0.026  Score=29.67  Aligned_cols=23  Identities=30%  Similarity=0.599  Sum_probs=20.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++++|.-.||||||+|+|.|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
T ss_conf             69997689897999999996898

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=93.26  E-value=0.041  Score=28.41  Aligned_cols=25  Identities=40%  Similarity=0.421  Sum_probs=20.7

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8199998699985899999998298
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ..++.++||+|+||||.+-=|+.++
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~   34 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYY   34 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             8689998999998899999999999

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.21  E-value=0.029  Score=29.36  Aligned_cols=21  Identities=33%  Similarity=0.695  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|++|+|||||++-+.+.
T Consensus         7 i~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999990989999999829

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.19  E-value=0.033  Score=29.01  Aligned_cols=21  Identities=48%  Similarity=0.621  Sum_probs=19.0

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|++|+|||||++-+.+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~~~   28 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTDN   28 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999999991989999999619

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.15  E-value=0.032  Score=29.09  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +-+-||+|+||||+.++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCCHHHHHHHHHHH
T ss_conf             9998899987054699999997

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.05  E-value=0.032  Score=29.12  Aligned_cols=20  Identities=15%  Similarity=0.486  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHHC
Q ss_conf             99986999858999999982
Q 005545          129 LAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++++|++|+|||||++-+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999899598999999982

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.01  E-value=0.032  Score=29.03  Aligned_cols=21  Identities=24%  Similarity=0.433  Sum_probs=19.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +||+|-..+|||||+|+|+|-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~   23 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLV   23 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             768899999899999999788

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=93.01  E-value=0.045  Score=28.11  Aligned_cols=97  Identities=21%  Similarity=0.215  Sum_probs=50.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             88199998699985899999998298999720999999727910125489991589789999999999997761499889
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL  204 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~  204 (691)
                      +..+++++||+|+||||.+-=|+-++. .               ..+.++.+.=|..           +.+         
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~---------------~~~kV~lit~Dt~-----------R~g---------   53 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D---------------EGKSVVLAAADTF-----------RAA---------   53 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHH-H---------------TTCCEEEEEECTT-----------CHH---------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH-H---------------CCCCEEEEEECCC-----------CCC---------
T ss_conf             998999989999988999999999999-7---------------7990699960133-----------420---------


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf             9999999999999990997423553248877655989999999999983199879991999999
Q 005545          205 TREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGL  268 (691)
Q Consensus       205 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgL  268 (691)
                          ..+..+..-+.++++-.....       +-.--.-.+-..+.+...+-+++|.|-|=..-
T Consensus        54 ----A~eQL~~~a~~l~i~~~~~~~-------~~d~~~~~~~~~~~~~~~~~d~ilIDTaGr~~  106 (213)
T d1vmaa2          54 ----AIEQLKIWGERVGATVISHSE-------GADPAAVAFDAVAHALARNKDVVIIDTAGRLH  106 (213)
T ss_dssp             ----HHHHHHHHHHHHTCEEECCST-------TCCHHHHHHHHHHHHHHTTCSEEEEEECCCCS
T ss_pred             ----HHHHHHHHHHHCCCCCCCCCC-------CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf             ----467888776432764103677-------77689987887899987699989982455330

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.98  E-value=0.029  Score=29.31  Aligned_cols=22  Identities=27%  Similarity=0.415  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++|+|++|+|||||++-+.+.
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8999998992989999999719

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.94  E-value=0.042  Score=28.29  Aligned_cols=21  Identities=29%  Similarity=0.612  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|++|+|||||++-+.+.
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999997999999999849

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.039  Score=28.49  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=19.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ++++|.+|+|||||++.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEECCCCCCHHHHHHHHHCCC
T ss_conf             9998989939999999981885

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.80  E-value=0.04  Score=28.45  Aligned_cols=22  Identities=27%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+|+|||||++-+.+.
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~~   25 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVKG   25 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8999998997989999999709

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.79  E-value=0.035  Score=28.84  Aligned_cols=21  Identities=52%  Similarity=0.659  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -++|+|+.|+|||||...|..
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~   24 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLY   24 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999994889809999999999

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.79  E-value=0.037  Score=28.67  Aligned_cols=21  Identities=38%  Similarity=0.719  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|.+|+|||||++-+.+.
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999991989999999719

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.77  E-value=0.033  Score=29.00  Aligned_cols=21  Identities=38%  Similarity=0.662  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++|+|+.|+|||||++-+.+.
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999990989999999619

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.75  E-value=0.039  Score=28.52  Aligned_cols=31  Identities=26%  Similarity=0.420  Sum_probs=26.7

Q ss_pred             CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             1279993881999986999858999999982
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       118 ~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      |.=+.+..|+-.+|.|++|+|||||+..++.
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHH
T ss_pred             EECCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             4125645787556867999887899999999

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=92.67  E-value=0.042  Score=28.34  Aligned_cols=22  Identities=45%  Similarity=0.641  Sum_probs=20.1

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +|++|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCHHHHHHHHHHHH
T ss_conf             9999345884999999997034

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.66  E-value=0.035  Score=28.85  Aligned_cols=21  Identities=29%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +.++|.+|+|||||++.+.+.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999991989999999729

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.65  E-value=0.035  Score=28.83  Aligned_cols=21  Identities=33%  Similarity=0.637  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|.+|+|||||++.+.+.
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999996789999999868

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.64  E-value=0.039  Score=28.52  Aligned_cols=21  Identities=29%  Similarity=0.638  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|++|+|||||++-+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999999993999999999629

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.57  E-value=0.037  Score=28.67  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+|+|||||++-+.+.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8999999997999999999739

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.49  E-value=0.044  Score=28.21  Aligned_cols=41  Identities=7%  Similarity=0.169  Sum_probs=26.5

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             9879991999999999999999999998739968999947986
Q 005545          256 PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPS  298 (691)
Q Consensus       256 P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~  298 (691)
                      .+++++||.- .+....+..+++.+..... ...++++++++.
T Consensus       100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~-~~~~~~~~~~~~  140 (227)
T d1sxjc2         100 FKLIILDEAD-AMTNAAQNALRRVIERYTK-NTRFCVLANYAH  140 (227)
T ss_dssp             CEEEEETTGG-GSCHHHHHHHHHHHHHTTT-TEEEEEEESCGG
T ss_pred             EEEEEEECCC-CCHHHHHHHHHHHHHHCCC-CEEECCCCCCHH
T ss_conf             1899996632-0002378999988631120-023201267087

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=92.45  E-value=0.046  Score=28.09  Aligned_cols=97  Identities=20%  Similarity=0.187  Sum_probs=50.2

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             88199998699985899999998298999720999999727910125489991589789999999999997761499889
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKL  204 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~  204 (691)
                      ...+++++||+|+||||.+-=|+-+.. .               ..++++.+.=|..   ..--.|              
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~---------------~g~kV~lit~Dt~---R~ga~e--------------   57 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K---------------KGFKVGLVGADVY---RPAALE--------------   57 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHH-H---------------TTCCEEEEECCCS---SHHHHH--------------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH-H---------------CCCCEEEEEEECC---CCCHHH--------------
T ss_conf             998999989999998999999999999-7---------------7993699972023---551567--------------


Q ss_pred             CHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH
Q ss_conf             999999999999999099742355324887765598999999999998319987999199999999
Q 005545          205 TREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS  270 (691)
Q Consensus       205 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~  270 (691)
                             ..+..-+.++++-......       -.--+-.+=++..+...+-+++|.|  |.|..+
T Consensus        58 -------QL~~~a~~l~v~~~~~~~~-------~~~~~~~~~a~~~~~~~~~d~IlID--TaGr~~  107 (211)
T d1j8yf2          58 -------QLQQLGQQIGVPVYGEPGE-------KDVVGIAKRGVEKFLSEKMEIIIVD--TAGRHG  107 (211)
T ss_dssp             -------HHHHHHHHHTCCEECCTTC-------CCHHHHHHHHHHHHHHTTCSEEEEE--CCCSCC
T ss_pred             -------HHHHHCCCCCCCEEECCCC-------HHHHHHHHHHHHHHHCCCCCEEEEE--CCCCCC
T ss_conf             -------8987401468422302441-------0244789999987402677369985--377676

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.40  E-value=0.018  Score=30.67  Aligned_cols=43  Identities=23%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEE-EEECCEE
Q ss_conf             9993881999986999858999999982989997209-9999972
Q 005545          121 GMVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGK-ITYNGRQ  164 (691)
Q Consensus       121 ~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~-I~~~G~~  164 (691)
                      +=++.|.++.+.||+|+|||||+-.++...... .|. |++|...
T Consensus        55 gG~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~-g~~~vyIDtE~   98 (269)
T d1mo6a1          55 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAA-GGVAAFIDAEH   98 (269)
T ss_dssp             SSBCSSSEEEEECSSSSSHHHHHHHHHHHHHHT-TCEEEEEESSC
T ss_pred             CCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCC-CCEEEEEECCC
T ss_conf             986663369996488748899999999987548-98899998976

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.39  E-value=0.043  Score=28.25  Aligned_cols=20  Identities=20%  Similarity=0.227  Sum_probs=18.2

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q ss_conf             99998699985899999998
Q 005545          128 LLAMLGPSGSGKTTLLTALA  147 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~  147 (691)
                      -+||+|+.|||||||...|.
T Consensus         8 ni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHH
T ss_conf             99999589899899999999

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.044  Score=28.18  Aligned_cols=21  Identities=33%  Similarity=0.669  Sum_probs=18.9

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|.+|+|||||++.+.+.
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999998990889999999719

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.33  E-value=0.046  Score=28.07  Aligned_cols=23  Identities=26%  Similarity=0.458  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++++|.+|+|||||++-+.+..
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~~   27 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999989939999999997199

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=92.30  E-value=0.066  Score=27.07  Aligned_cols=25  Identities=36%  Similarity=0.521  Sum_probs=20.3

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             8199998699985899999998298
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -.+++++||+|+||||.+-=|+-++
T Consensus         9 p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           9 PFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             TEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             9799998999999899999999999

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.29  E-value=0.051  Score=27.75  Aligned_cols=22  Identities=36%  Similarity=0.649  Sum_probs=19.6

Q ss_pred             EEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9998699985899999998298
Q 005545          129 LAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +.++|.+|+|||||++.+.+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEECCCCCCHHHHHHHHHHCC
T ss_conf             9999989929999999997286

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=92.18  E-value=0.024  Score=29.86  Aligned_cols=29  Identities=34%  Similarity=0.627  Sum_probs=26.1

Q ss_pred             EEEECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             99938819999869998589999999829
Q 005545          121 GMVKPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       121 ~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +=++.|.++-+-||+|||||||.-.++..
T Consensus        52 GGip~g~itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          52 GGIPRGRITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             SSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf             98667547898058765227999999999

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=92.18  E-value=0.043  Score=28.23  Aligned_cols=22  Identities=23%  Similarity=0.418  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -+||+|-+.+|||||+++|++-
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             7999789999899999999778

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.14  E-value=0.05  Score=27.83  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|.+|+|||||++-+.+.
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999992989999999739

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=92.12  E-value=0.033  Score=28.97  Aligned_cols=23  Identities=35%  Similarity=0.491  Sum_probs=19.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      ++.+.||+|.||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             89967899989999999999998

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.11  E-value=0.049  Score=27.86  Aligned_cols=21  Identities=29%  Similarity=0.594  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +.|+|.+|+|||||++-+.+.
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999994989999999729

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=91.96  E-value=0.069  Score=26.94  Aligned_cols=23  Identities=26%  Similarity=0.332  Sum_probs=20.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             19999869998589999999829
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      .++||.|+-||||||..+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
T ss_conf             89999799998899999999986

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.048  Score=27.93  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -+.|+|.+|+|||||++-+.+.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998993889999999719

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.054  Score=27.63  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=19.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      -++|+|.+|+|||||++-+.+..
T Consensus         7 KivviG~~~vGKTsli~~~~~~~   29 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTNA   29 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHHCC
T ss_conf             99999999979999999997498

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.92  E-value=0.049  Score=27.91  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+|+|||||++-+.+.
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             8999998990989999999849

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=91.91  E-value=0.027  Score=29.54  Aligned_cols=20  Identities=45%  Similarity=0.650  Sum_probs=17.7

Q ss_pred             EEEECCCCCCHHHHHHHHHC
Q ss_conf             99986999858999999982
Q 005545          129 LAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++++|++|+|||||++-+.+
T Consensus        20 I~lvG~~~vGKTsLi~~l~~   39 (182)
T d1moza_          20 ILILGLDGAGKTTILYRLQI   39 (182)
T ss_dssp             EEEEEETTSSHHHHHHHTCC
T ss_pred             EEEECCCCCCHHHHHHHHHC
T ss_conf             99999999988999988733

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.84  E-value=0.05  Score=27.82  Aligned_cols=20  Identities=30%  Similarity=0.647  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHC
Q ss_conf             99986999858999999982
Q 005545          129 LAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++++|.+|+|||||++-+.+
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999999099999999970

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.72  E-value=0.06  Score=27.34  Aligned_cols=21  Identities=24%  Similarity=0.594  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|.+|+|||||++-+.+.
T Consensus         7 i~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999998994999999999739

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=91.71  E-value=0.057  Score=27.46  Aligned_cols=41  Identities=32%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             EEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEE-EECCEECC
Q ss_conf             9938819999869998589999999829899972099-99997279
Q 005545          122 MVKPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKI-TYNGRQFS  166 (691)
Q Consensus       122 ~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I-~~~G~~~~  166 (691)
                      .++.+..+.+.||+|+|||++.+.|++.+    .|.+ .+|+-+..
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~----~~~~i~in~s~~r  191 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELC----GGKALNVNLPLDR  191 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHH----CCEEECCSSCTTT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHC----CCCEEEEECCCHH
T ss_conf             89976769998999988899999999985----9978999774201

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.71  E-value=0.048  Score=27.95  Aligned_cols=29  Identities=31%  Similarity=0.314  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCE
Q ss_conf             99998699985899999998298999720
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSG  156 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~~~~~G  156 (691)
                      -+.++|.+|+|||||++-+..-...|+.|
T Consensus         8 KilllG~~~vGKTsll~~~~~~~~~pTiG   36 (221)
T d1azta2           8 RLLLLGAGESGKSTIVKQMRILHVVLTSG   36 (221)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCC
T ss_conf             79999899998899999895098278888

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.076  Score=26.66  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             199998699985899999998298
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+++|=|+-||||||+++.|+-.+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
T ss_conf             199998998885999999999987

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.45  E-value=0.035  Score=28.85  Aligned_cols=21  Identities=38%  Similarity=0.618  Sum_probs=18.5

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|.+|+|||||++.+.+.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSED   29 (173)
T ss_dssp             EEEECCCCC------------
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999994999999999709

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.41  E-value=0.066  Score=27.07  Aligned_cols=21  Identities=38%  Similarity=0.430  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -++++|+.++|||||++.|.+
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~   25 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTY   25 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHH
T ss_conf             999994789849999999999

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.062  Score=27.25  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=18.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+|+|||||++-+.+.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999997996989999999739

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.37  E-value=0.068  Score=26.97  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=18.4

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +.++|.+|+|||||++-+.+.
T Consensus         6 ivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999993989999999829

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.07  Score=26.91  Aligned_cols=22  Identities=32%  Similarity=0.617  Sum_probs=19.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -+.++|++|+|||+|++-+.+.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998997899999999739

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.069  Score=26.95  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=19.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+|+|||||++-+.+.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998997899999999719

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.27  E-value=0.069  Score=26.92  Aligned_cols=22  Identities=23%  Similarity=0.513  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+|+|||||++-+.+.
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999991989999999729

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.17  E-value=0.073  Score=26.76  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -+.++|.+|+|||||++-+.+.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999998995989999999709

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=91.05  E-value=0.041  Score=28.37  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=18.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -+.++|++|+|||||++-+.+.
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             9999999998789999998448

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.99  E-value=0.076  Score=26.65  Aligned_cols=30  Identities=27%  Similarity=0.357  Sum_probs=21.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHC-CCCCCCCEE
Q ss_conf             999986999858999999982-989997209
Q 005545          128 LLAMLGPSGSGKTTLLTALAG-RLRGKFSGK  157 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G-~~~~~~~G~  157 (691)
                      -+.++|.+|+|||||++-+.- ....|+.|-
T Consensus         4 KivllG~~~vGKTsll~r~~f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMRIIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCEEEE
T ss_conf             9999989999989999988468988872414

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=90.92  E-value=0.077  Score=26.61  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=22.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEEC
Q ss_conf             19999869998589999999829899972099999
Q 005545          127 ELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYN  161 (691)
Q Consensus       127 e~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~  161 (691)
                      ..+.|+|++|||||++++.+.-.....-.+-|.+|
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD   85 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD   85 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf             65899907999689999999999984799889996

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.079  Score=26.57  Aligned_cols=22  Identities=32%  Similarity=0.505  Sum_probs=19.0

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -+.++|.+|+|||||++-+.+.
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999994989999999859

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.079  Score=26.56  Aligned_cols=20  Identities=40%  Similarity=0.672  Sum_probs=18.1

Q ss_pred             EEEECCCCCCHHHHHHHHHC
Q ss_conf             99986999858999999982
Q 005545          129 LAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++++|++|+|||||++-+.+
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99999999299999999971

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.074  Score=26.72  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=18.8

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++|+|.+|+|||||++-+...
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHHC
T ss_conf             999999998999999999649

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.81  E-value=0.037  Score=28.68  Aligned_cols=26  Identities=35%  Similarity=0.420  Sum_probs=22.2

Q ss_pred             CEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             81999986999858999999982989
Q 005545          126 GELLAMLGPSGSGKTTLLTALAGRLR  151 (691)
Q Consensus       126 Ge~~aiiGpsGsGKSTLl~~L~G~~~  151 (691)
                      |.-+.|.||.|+|||||++.+++.++
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf             97089988998529999999987379

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=90.72  E-value=0.084  Score=26.39  Aligned_cols=21  Identities=29%  Similarity=0.452  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -+.++|.+|+|||||++-+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999899588999999972

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.043  Score=28.28  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -++++|++|+|||||++-+.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999088999999984

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=90.56  E-value=0.11  Score=25.76  Aligned_cols=35  Identities=31%  Similarity=0.362  Sum_probs=25.7

Q ss_pred             EEECEEEEEECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             255127999388199998699985899999998298
Q 005545          115 VLNGVSGMVKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       115 iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      +..-+-.....| .+.+.||+|+|||.|.+.|++..
T Consensus       113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             898861436886-38887799850889999999986

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.37  E-value=0.085  Score=26.36  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=18.8

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -++++|.+|+|||||++-+.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHC
T ss_conf             9999999996999999999719

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.30  E-value=0.095  Score=26.04  Aligned_cols=39  Identities=33%  Similarity=0.439  Sum_probs=26.4

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf             388199998699985899999998298999720999999
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNG  162 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G  162 (691)
                      +|.-.+.++||+|+|||.|.+.|+..+.+....-+.+|.
T Consensus        51 kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~   89 (315)
T d1qvra3          51 RPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM   89 (315)
T ss_dssp             SCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCCEEEEEC
T ss_conf             876699997888624899999999983588753488731

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=90.22  E-value=0.1  Score=25.87  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      .+||+|-+.+|||||+++|++-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~   25 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKA   25 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
T ss_conf             4888899999889999999779

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=90.17  E-value=0.1  Score=25.78  Aligned_cols=95  Identities=15%  Similarity=0.098  Sum_probs=54.2

Q ss_pred             HHHCCCEEEEECCCCC-CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHCC-CEEEEECCCEEEEECCHHH-----
Q ss_conf             8319987999199999-99999999999999987399689999479866898507-8799960985777449757-----
Q 005545          252 MLVNPSCLLLDEPTSG-LDSTTAQRIVATLRGLARGGRTVITTIHQPSSRLYRMF-DKVVVLSEGSPIYSGRAAQ-----  324 (691)
Q Consensus       252 L~~~P~illlDEPtsg-LD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~i~~~~-D~v~vL~~G~iv~~G~~~~-----  324 (691)
                      ...+.+++++|+--.= -+...+..+..++..+.+.|+.+|+++..+....-..- |-.--+..|-++.-.+..+     
T Consensus        94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~p~d~~~~~i  173 (213)
T d1l8qa2          94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIELDNKTRFKI  173 (213)
T ss_dssp             HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCCCHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHCCCCCHHHHHHHHCCEEEEECCCCHHHHHH
T ss_conf             87621301011265505865778899999998763166389954875100134326788886185689978882799999


Q ss_pred             HHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf             9987642699889999995799998
Q 005545          325 VMDYFGSIGYVPGFNLLNPADFLLD  349 (691)
Q Consensus       325 ~~~~f~~~G~~~~~~~~npad~~l~  349 (691)
                      +..+....|...+.   +.++|++.
T Consensus       174 L~~~a~~rgl~l~~---~v~~yl~~  195 (213)
T d1l8qa2         174 IKEKLKEFNLELRK---EVIDYLLE  195 (213)
T ss_dssp             HHHHHHHTTCCCCH---HHHHHHHH
T ss_pred             HHHHHHHCCCCCCH---HHHHHHHH
T ss_conf             99999982999999---99999998

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.06  E-value=0.097  Score=25.97  Aligned_cols=19  Identities=26%  Similarity=0.497  Sum_probs=18.0

Q ss_pred             EEEECCCCCCHHHHHHHHH
Q ss_conf             9998699985899999998
Q 005545          129 LAMLGPSGSGKTTLLTALA  147 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~  147 (691)
                      +||+|+-|+|||||++.|.
T Consensus        20 I~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHH
T ss_pred             EEEEECCCCCHHHHHHHHH
T ss_conf             9999688886999999999

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.99  E-value=0.4  Score=22.00  Aligned_cols=156  Identities=11%  Similarity=0.095  Sum_probs=72.9

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCCCC----CCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCC
Q ss_conf             8819999869998589999999829899----972099999972791012548999158978999999999999776149
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRLRG----KFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRL  200 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~~~----~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~  200 (691)
                      ...+++|.|..|.|||||.+.+......    ...|.+                +|.-..    ..+.. .+        
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~----------------Wv~vs~----~~~~~-~l--------   93 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIV----------------WLKDSG----TAPKS-TF--------   93 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEE----------------EEECCC----CSTTH-HH--------
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEE----------------EEEECC----CCCHH-HH--------
T ss_conf             84089997799788899999999855655401276489----------------999368----77777-89--------


Q ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf             988999999999999999909974235532488776559899999999999831-9987999199999999999999999
Q 005545          201 PKKLTREEKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV-NPSCLLLDEPTSGLDSTTAQRIVAT  279 (691)
Q Consensus       201 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~-~P~illlDEPtsgLD~~~~~~i~~~  279 (691)
                               .......+..++-.+..+..-.    .. .-..+.+..+..+.+. ..-++++|.--   |...       
T Consensus        94 ---------~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~L~~kr~LlVLDDv~---~~~~-------  149 (277)
T d2a5yb3          94 ---------DLFTDILLMLKSEDDLLNFPSV----EH-VTSVVLKRMICNALIDRPNTLFVFDDVV---QEET-------  149 (277)
T ss_dssp             ---------HHHHHHHHHHTTTSCCTTCCCC----TT-CCHHHHHHHHHHHHTTSTTEEEEEEEEC---CHHH-------
T ss_pred             ---------HHHHHHHHHHHCCHHHCCCCCC----HH-HHHHHHHHHHHHHHHCCCCEEEECCHHH---HHHH-------
T ss_conf             ---------9999999987220220278632----12-3369999999999844688167525066---7766-------


Q ss_pred             HHHHHHCCCEEEEEECCCCHHHHHCCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCC
Q ss_conf             99987399689999479866898507879996098577744975799876426998899
Q 005545          280 LRGLARGGRTVITTIHQPSSRLYRMFDKVVVLSEGSPIYSGRAAQVMDYFGSIGYVPGF  338 (691)
Q Consensus       280 L~~l~~~g~tii~~~H~p~~~i~~~~D~v~vL~~G~iv~~G~~~~~~~~f~~~G~~~~~  338 (691)
                      ++.+...|.-+|+||-+. .......+....+.    +..=+.+++.+-|...++..+.
T Consensus       150 ~~~~~~~~srilvTTR~~-~v~~~~~~~~~~~~----l~~L~~~ea~~Lf~~~~~~~~~  203 (277)
T d2a5yb3         150 IRWAQELRLRCLVTTRDV-EISNAASQTCEFIE----VTSLEIDECYDFLEAYGMPMPV  203 (277)
T ss_dssp             HHHHHHTTCEEEEEESBG-GGGGGCCSCEEEEE----CCCCCHHHHHHHHHHTSCCCC-
T ss_pred             HHHHCCCCCEEEEEEEHH-HHHHHCCCCCCEEE----CCCCCHHHHHHHHHHHHCCCCC
T ss_conf             555204575599996448-99986378871687----7889979999999998477667

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=89.77  E-value=0.2  Score=24.02  Aligned_cols=28  Identities=32%  Similarity=0.527  Sum_probs=22.7

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             3881999986999858999999982989
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGRLR  151 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~~~  151 (691)
                      +|.=-+|++|.-.+|||||++.|.|...
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~~~~   33 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITGIWT   33 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHSCCC
T ss_pred             CCCEEEEEEECCCCCHHHHHHHHHHHHC
T ss_conf             9970899997248869999999970412

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.12  Score=25.48  Aligned_cols=21  Identities=33%  Similarity=0.591  Sum_probs=18.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCC
Q ss_conf             999869998589999999829
Q 005545          129 LAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++++|.+|+|||+|++-+.+.
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHCC
T ss_conf             999998998999999999709

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.59  E-value=0.18  Score=24.32  Aligned_cols=31  Identities=26%  Similarity=0.446  Sum_probs=25.9

Q ss_pred             CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             1279993881999986999858999999982
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       118 ~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      |.=..+..|+-.+|.|++|+|||||+.-++.
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~   90 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELIN   90 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEECCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             1025636788777667999898999999999

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.52  E-value=0.12  Score=25.47  Aligned_cols=21  Identities=38%  Similarity=0.563  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -+.++|.+|+|||+|++-+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999598999999972

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=88.71  E-value=0.27  Score=23.11  Aligned_cols=23  Identities=26%  Similarity=0.244  Sum_probs=20.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+.|=|+-|+||||+++.|+..+
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998886678999999999986

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=88.60  E-value=0.17  Score=24.45  Aligned_cols=27  Identities=37%  Similarity=0.709  Sum_probs=21.4

Q ss_pred             EECCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             9388199998699985899999998298
Q 005545          123 VKPGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       123 i~~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+++. +.++||+|+|||-|.+.||...
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCCC-EEEECCCCCCHHHHHHHHHHHC
T ss_conf             78753-2441899863789999998644

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.41  E-value=0.13  Score=25.10  Aligned_cols=22  Identities=36%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ++.|.|.=|||||||++-+...
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEECCCCCHHHHHHHHHHC
T ss_conf             8998648889999999999856

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=87.71  E-value=0.17  Score=24.44  Aligned_cols=23  Identities=35%  Similarity=0.351  Sum_probs=20.1

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             99998699985899999998298
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .++|=|+-|+||||+++.|+..+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
T ss_conf             99998986778999999999981

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=87.44  E-value=0.22  Score=23.71  Aligned_cols=111  Identities=20%  Similarity=0.220  Sum_probs=57.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             99998699985899999998298999720999999727910125489991589789999999999997761499889999
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTRE  207 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~  207 (691)
                      -..|+||+|.|||+++.-|+.++.   .|++       ...++...-+...-..+....            .     .+.
T Consensus        41 n~lLVG~~GvGKTalv~~la~ri~---~~~v-------p~~l~~~~i~~l~~~~liag~------------~-----~~g   93 (268)
T d1r6bx2          41 NPLLVGESGVGKTAIAEGLAWRIV---QGDV-------PEVMADCTIYSLDIGSLLAGT------------K-----YRG   93 (268)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH---HTCS-------CGGGTTCEEEECCCC---CCC------------C-----CSS
T ss_pred             CCEEECCCCCCHHHHHHHHHHHHH---HCCC-------CCCCCCCEEEEEEECHHHCCC------------C-----CCH
T ss_conf             967988898867799999999998---1784-------500035412786405675067------------6-----300


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCH----HHHHHHHHHHHHH
Q ss_conf             999999999999099742355324887765598999999999998319987999199999999----9999999999998
Q 005545          208 EKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLVNPSCLLLDEPTSGLDS----TTAQRIVATLRGL  283 (691)
Q Consensus       208 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~~P~illlDEPtsgLD~----~~~~~i~~~L~~l  283 (691)
                      +..+++..+++.+.-                               .+..++|.||..+=+..    .....+.++|+..
T Consensus        94 ~~e~r~~~i~~~~~~-------------------------------~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~  142 (268)
T d1r6bx2          94 DFEKRFKALLKQLEQ-------------------------------DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL  142 (268)
T ss_dssp             CHHHHHHHHHHHHSS-------------------------------SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHC-------------------------------CCCCEEEECCHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             589999999998612-------------------------------6784688433698862777788641179876488


Q ss_pred             H-HCCCEEEEEECC
Q ss_conf             7-399689999479
Q 005545          284 A-RGGRTVITTIHQ  296 (691)
Q Consensus       284 ~-~~g~tii~~~H~  296 (691)
                      - +....+|.++..
T Consensus       143 L~rg~i~vIgatT~  156 (268)
T d1r6bx2         143 LSSGKIRVIGSTTY  156 (268)
T ss_dssp             SSSCCCEEEEEECH
T ss_pred             HHCCCCEEEEECCH
T ss_conf             74798759995799

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=87.10  E-value=0.28  Score=23.06  Aligned_cols=24  Identities=46%  Similarity=0.656  Sum_probs=18.3

Q ss_pred             EEEEE-CCEEEEEECCCCCCHHHHH
Q ss_conf             79993-8819999869998589999
Q 005545          120 SGMVK-PGELLAMLGPSGSGKTTLL  143 (691)
Q Consensus       120 s~~i~-~Ge~~aiiGpsGsGKSTLl  143 (691)
                      |..+. .|++..+.|.||.|||||-
T Consensus         7 san~~~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1           7 SANVGKEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             EEEECTTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf             3004899988999736879814221

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=86.93  E-value=0.19  Score=24.11  Aligned_cols=21  Identities=33%  Similarity=0.515  Sum_probs=18.3

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -+.++|.+|+|||||++-+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
T ss_conf             999999999888999998840

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.75  E-value=0.22  Score=23.67  Aligned_cols=21  Identities=33%  Similarity=0.512  Sum_probs=18.5

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -+.++|.+|+|||||++-+..
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~   24 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRI   24 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHC
T ss_conf             999999999988999999967

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=86.74  E-value=0.29  Score=22.93  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=20.9

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCC
Q ss_conf             999986999858999999982989
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLR  151 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~  151 (691)
                      .+.|=|+-|+||||+++.|+..+.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
T ss_conf             999988877889999999999873

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=86.67  E-value=0.2  Score=24.01  Aligned_cols=24  Identities=46%  Similarity=0.686  Sum_probs=18.6

Q ss_pred             EEEE-ECCEEEEEECCCCCCHHHHH
Q ss_conf             7999-38819999869998589999
Q 005545          120 SGMV-KPGELLAMLGPSGSGKTTLL  143 (691)
Q Consensus       120 s~~i-~~Ge~~aiiGpsGsGKSTLl  143 (691)
                      |..+ +.|++..+.|-||+|||||-
T Consensus         7 san~~~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1           7 SANVGEKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             EEEECTTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCCCCCCEEEEECCCCCCCCCCE
T ss_conf             3104888988999704779856023

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.98  E-value=0.29  Score=22.91  Aligned_cols=43  Identities=12%  Similarity=0.206  Sum_probs=27.3

Q ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCH
Q ss_conf             998799919999999999999999999987399689999479866
Q 005545          255 NPSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSS  299 (691)
Q Consensus       255 ~P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~  299 (691)
                      +.+++++||.-. |...++..+++.+.+-.+ +..+|++++++..
T Consensus       108 ~~kviIide~d~-l~~~a~n~Llk~lEep~~-~~~fIl~t~~~~~  150 (207)
T d1a5ta2         108 GAKVVWVTDAAL-LTDAAANALLKTLEEPPA-ETWFFLATREPER  150 (207)
T ss_dssp             SCEEEEESCGGG-BCHHHHHHHHHHHTSCCT-TEEEEEEESCGGG
T ss_pred             CCCEEEECHHHH-HHHHHHHHHHHHHHHHCC-CCEEEEEECCHHH
T ss_conf             640477313442-000014999999985011-1104553068655

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=85.94  E-value=0.32  Score=22.65  Aligned_cols=43  Identities=16%  Similarity=0.182  Sum_probs=28.7

Q ss_pred             CCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHH
Q ss_conf             987999199999999999999999999873996899994798668
Q 005545          256 PSCLLLDEPTSGLDSTTAQRIVATLRGLARGGRTVITTIHQPSSR  300 (691)
Q Consensus       256 P~illlDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~~~H~p~~~  300 (691)
                      .+++++||.-. |+...+..+++.+.+-. .+..+|++++++...
T Consensus       116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~-~~~~~il~tn~~~~i  158 (239)
T d1njfa_         116 FKVYLIDEVHM-LSRHSFNALLKTLEEPP-EHVKFLLATTDPQKL  158 (239)
T ss_dssp             SEEEEEETGGG-SCHHHHHHHHHHHHSCC-TTEEEEEEESCGGGS
T ss_pred             CEEEEEECCCC-CCHHHHHHHHHHHHCCC-CCEEEEEECCCCCCC
T ss_conf             87999978110-89999999999985689-886999973885636

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.71  E-value=0.27  Score=23.12  Aligned_cols=21  Identities=33%  Similarity=0.417  Sum_probs=18.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHC
Q ss_conf             999986999858999999982
Q 005545          128 LLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      -++++|.-++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHH
T ss_conf             899994479999999999999

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=85.48  E-value=0.33  Score=22.59  Aligned_cols=22  Identities=32%  Similarity=0.400  Sum_probs=19.6

Q ss_pred             EEEEECCCCCCHHHHHHHHHCC
Q ss_conf             9999869998589999999829
Q 005545          128 LLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      -+|++|.-.+|||||++.|.+.
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~   26 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKI   26 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHHHH
T ss_conf             8999958898099999999999

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=84.72  E-value=0.23  Score=23.57  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=17.5

Q ss_pred             CCEEECEEEEEECCEEEEEECCCCCCHHHHH
Q ss_conf             4125512799938819999869998589999
Q 005545          113 VSVLNGVSGMVKPGELLAMLGPSGSGKTTLL  143 (691)
Q Consensus       113 ~~iL~~vs~~i~~Ge~~aiiGpsGsGKSTLl  143 (691)
                      +.+++..     .|. +.|.|+.||||||.|
T Consensus        17 ~~~v~~~-----~g~-~lV~g~aGSGKTt~l   41 (318)
T d1pjra1          17 QEAVRTT-----EGP-LLIMAGAGSGKTRVL   41 (318)
T ss_dssp             HHHHHCC-----SSC-EEEEECTTSCHHHHH
T ss_pred             HHHHHCC-----CCC-EEEEECCCCCHHHHH
T ss_conf             9998299-----999-899952986689999

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.43  E-value=0.3  Score=22.86  Aligned_cols=19  Identities=47%  Similarity=0.782  Sum_probs=16.9

Q ss_pred             CCEEEEEECCCCCCHHHHH
Q ss_conf             8819999869998589999
Q 005545          125 PGELLAMLGPSGSGKTTLL  143 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl  143 (691)
                      .|++..+.|-||.|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEECCCCCCCCCCE
T ss_conf             8987999736778812051

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=83.93  E-value=0.41  Score=21.94  Aligned_cols=109  Identities=22%  Similarity=0.246  Sum_probs=58.7

Q ss_pred             EEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHH
Q ss_conf             99998699985899999998298999720999999727910125489991589789999999999997761499889999
Q 005545          128 LLAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTRE  207 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~  207 (691)
                      -..++||+|.|||++..-|+.++.   .|++       ...++...-|.         +.+..- .  |-     ...+.
T Consensus        45 n~lLvG~pGVGKTalv~~LA~ri~---~~~v-------p~~L~~~~i~~---------ld~~~L-i--Ag-----~~~rG   97 (195)
T d1jbka_          45 NPVLIGEPGVGKTAIVEGLAQRII---NGEV-------PEGLKGRRVLA---------LDMGAL-V--AG-----AKYRG   97 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH---HTCS-------CGGGTTCEEEE---------ECHHHH-H--TT-----TCSHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHH---HCCC-------CHHHCCCEEEE---------EEHHHH-H--CC-----CCCCH
T ss_conf             739983587544799999999998---0899-------97881856999---------669998-6--45-----87407


Q ss_pred             HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCCCCCHHHH---HHHHHHHHH
Q ss_conf             99999999999909974235532488776559899999999999831-9-987999199999999999---999999999
Q 005545          208 EKIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV-N-PSCLLLDEPTSGLDSTTA---QRIVATLRG  282 (691)
Q Consensus       208 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~-~-P~illlDEPtsgLD~~~~---~~i~~~L~~  282 (691)
                      +..+++..+++.+                                .. + .-|||.||..+=++....   ..+.++|+.
T Consensus        98 ~~E~rl~~il~e~--------------------------------~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp  145 (195)
T d1jbka_          98 EFEERLKGVLNDL--------------------------------AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKP  145 (195)
T ss_dssp             HHHHHHHHHHHHH--------------------------------HHSTTTEEEEEETGGGGTT------CCCCHHHHHH
T ss_pred             HHHHHHHHHHHHH--------------------------------HCCCCCEEEECCHHHHHHCCCCCCCCCCHHHHHHH
T ss_conf             7999999999987--------------------------------31798089972608998437877775238999999


Q ss_pred             HHHCC-CEEEEEEC
Q ss_conf             87399-68999947
Q 005545          283 LARGG-RTVITTIH  295 (691)
Q Consensus       283 l~~~g-~tii~~~H  295 (691)
                      .-.+| ..+|.++.
T Consensus       146 ~L~rg~l~~IgatT  159 (195)
T d1jbka_         146 ALARGELHCVGATT  159 (195)
T ss_dssp             HHHTTSCCEEEEEC
T ss_pred             HHHCCCCEEEECCC
T ss_conf             98579954985189

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=83.90  E-value=0.52  Score=21.32  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCCC
Q ss_conf             88199998699985899999998298
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGRL  150 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~~  150 (691)
                      .+-.++++|-..+|||||+|.|.|+.
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHCCC
T ss_conf             75278998667544355542542661

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=83.54  E-value=0.33  Score=22.58  Aligned_cols=16  Identities=38%  Similarity=0.544  Sum_probs=13.3

Q ss_pred             EEEEECCCCCCHHHHH
Q ss_conf             9999869998589999
Q 005545          128 LLAMLGPSGSGKTTLL  143 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl  143 (691)
                      -+.|.|+.||||||.+
T Consensus        16 ~~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEEECCCTTSCHHHHH
T ss_pred             CEEEEEECCCCHHHHH
T ss_conf             9899962884389999

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=83.32  E-value=0.58  Score=20.97  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             3881999986999858999999982
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      +..+.+-|.|.||||||+-.+.+..
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf             8981899973898998999999999

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=82.21  E-value=0.5  Score=21.42  Aligned_cols=20  Identities=30%  Similarity=0.406  Sum_probs=18.6

Q ss_pred             EEEECCCCCCHHHHHHHHHC
Q ss_conf             99986999858999999982
Q 005545          129 LAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++++|.-.+|||||++.|..
T Consensus        12 i~viGHVd~GKSTL~~~Ll~   31 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLH   31 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
T ss_conf             99993789898999999999

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=81.95  E-value=0.64  Score=20.70  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=17.5

Q ss_pred             CCEEEEEECCCCCCHHHHHHH
Q ss_conf             881999986999858999999
Q 005545          125 PGELLAMLGPSGSGKTTLLTA  145 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~  145 (691)
                      .+.++.|.||.|+||||++..
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHH
T ss_pred             CCCEEEEECCCCCCCEEHHHH
T ss_conf             088599976898875216999

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.94  E-value=0.5  Score=21.43  Aligned_cols=20  Identities=30%  Similarity=0.378  Sum_probs=17.9

Q ss_pred             EEEEECCCCCCHHHHHHHHH
Q ss_conf             99998699985899999998
Q 005545          128 LLAMLGPSGSGKTTLLTALA  147 (691)
Q Consensus       128 ~~aiiGpsGsGKSTLl~~L~  147 (691)
                      -++++|..++|||||..-|.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCHHHHHHHHH
T ss_conf             79999478998999999999

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=81.68  E-value=0.67  Score=20.58  Aligned_cols=26  Identities=27%  Similarity=0.364  Sum_probs=21.9

Q ss_pred             ECCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             38819999869998589999999829
Q 005545          124 KPGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       124 ~~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      +..+.+-|.|+||||||.-.+.+...
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~y  148 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQY  148 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf             89916999679988889999999999

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=81.13  E-value=0.72  Score=20.38  Aligned_cols=25  Identities=24%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             CCEEEEEECCCCCCHHHHHHHHHCC
Q ss_conf             8819999869998589999999829
Q 005545          125 PGELLAMLGPSGSGKTTLLTALAGR  149 (691)
Q Consensus       125 ~Ge~~aiiGpsGsGKSTLl~~L~G~  149 (691)
                      ..+.+-|.|.||||||+-.|.+...
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~y  114 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQY  114 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf             9917999718988889999999999

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.87  E-value=0.38  Score=22.17  Aligned_cols=31  Identities=16%  Similarity=0.152  Sum_probs=25.2

Q ss_pred             CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             1279993881999986999858999999982
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       118 ~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      |.-+.+..|+..+|.|++|.|||+|+.-++.
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ECCCCCCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf             4346766787787656888885899999997

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=80.86  E-value=0.36  Score=22.29  Aligned_cols=20  Identities=25%  Similarity=0.358  Sum_probs=18.2

Q ss_pred             EEEECCCCCCHHHHHHHHHC
Q ss_conf             99986999858999999982
Q 005545          129 LAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G  148 (691)
                      ++++|+-++|||||+..|..
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEECCCCHHHHHHHHHH
T ss_conf             99995279899999999999

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=80.24  E-value=0.55  Score=21.13  Aligned_cols=108  Identities=25%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCCCEEEEECCEECCHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHH
Q ss_conf             99986999858999999982989997209999997279101254899915897899999999999977614998899999
Q 005545          129 LAMLGPSGSGKTTLLTALAGRLRGKFSGKITYNGRQFSSSLKRKTGFVTQDDVLYPHLTVLETLSYAALLRLPKKLTREE  208 (691)
Q Consensus       129 ~aiiGpsGsGKSTLl~~L~G~~~~~~~G~I~~~G~~~~~~~~~~i~~v~Q~~~l~~~lTV~E~L~~~a~~~~~~~~~~~~  208 (691)
                      ..|+|++|.|||+++.-|+.++.   .|++       ...++...-|...-..+.          -++.       .+.+
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i~---~~~v-------p~~l~~~~i~~ld~~~l~----------ag~~-------~~g~   98 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRIV---KGDV-------PEGLKGKRIVSLQMGSLL----------AGAK-------YRGE   98 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHHH---HTCS-------CTTSTTCEEEEECC----------------------------C
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH---HCCC-------CHHHCCCEEEEEEHHHHH----------CCCC-------CCHH
T ss_conf             76879999889999999999998---0899-------978869668995576665----------2667-------4136


Q ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-C-CCEEEEECCCCCCCHH---HHHHHHHHHHHH
Q ss_conf             9999999999909974235532488776559899999999999831-9-9879991999999999---999999999998
Q 005545          209 KIEQAEMVIMELGLTRCRNSVVGGPLFRGISGGERKRVSIGQEMLV-N-PSCLLLDEPTSGLDST---TAQRIVATLRGL  283 (691)
Q Consensus       209 ~~~~v~~~l~~lgL~~~~~~~vg~~~~rgLSGGerqRv~Ia~aL~~-~-P~illlDEPtsgLD~~---~~~~i~~~L~~l  283 (691)
                      ..+++..+++.+                                .. + +-|||.||..+=+..-   ......++|+..
T Consensus        99 ~e~r~~~i~~~~--------------------------------~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~  146 (387)
T d1qvra2          99 FEERLKAVIQEV--------------------------------VQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA  146 (387)
T ss_dssp             HHHHHHHHHHHH--------------------------------HTTCSSEEEEECCC-------------------HHH
T ss_pred             HHHHHHHHHHHH--------------------------------CCCCCCEEEEECCHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf             899999999985--------------------------------058996698724088884277787741389999999


Q ss_pred             HHC-CCEEEEEEC
Q ss_conf             739-968999947
Q 005545          284 ARG-GRTVITTIH  295 (691)
Q Consensus       284 ~~~-g~tii~~~H  295 (691)
                      -.+ ...+|.++.
T Consensus       147 L~rg~~~~I~~tT  159 (387)
T d1qvra2         147 LARGELRLIGATT  159 (387)
T ss_dssp             HHTTCCCEEEEEC
T ss_pred             HHCCCCCEEEECC
T ss_conf             7378851666368

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.18  E-value=0.32  Score=22.61  Aligned_cols=31  Identities=23%  Similarity=0.175  Sum_probs=25.0

Q ss_pred             CEEEEEECCEEEEEECCCCCCHHHHHHHHHC
Q ss_conf             1279993881999986999858999999982
Q 005545          118 GVSGMVKPGELLAMLGPSGSGKTTLLTALAG  148 (691)
Q Consensus       118 ~vs~~i~~Ge~~aiiGpsGsGKSTLl~~L~G  148 (691)
                      |.=+.+..|+..+|.|++|+|||+|+.-++-
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHH
T ss_pred             ECCCCCCCCCEEEECCCCCCCHHHHHHHHHH
T ss_conf             5014546776676006778885799999776