Citrus Sinensis ID: 005555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI
ccccccccccEEEEEEccccccccccHHHHHHHHcccccccccccHHHHHHHHHccccccccccccccEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHcccEEcccccccccccccEEEEEcccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEEcccccccccccHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEEEEEccccccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHHHHHHcccccccccccccccccccccEEEEccccEEEEEEEcccccccccccHHHHHHHHHHcccccHHHHHccccccccccEEcccccEEEEEEEEcccHHHHHHcc
ccccccccccEEEEEEEccccccccccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccEcEcccccHHHHHHHHHHHHHHHHcccccccHHHHHHcccEEEEccccccEEEEEEEEEccccccccHHHHHHHHHHHHHcccccccEcccccHHHcccccHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccccccccHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccHHcccccccccccEEEcccccEEEEEEcccccEEEEEEEEccccccHHHHcHHHHHHHHHHHcccccccHHHHHHHHHHHccccEcccEEcccccccccccEEEEEcHHHHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEcccEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHEEccccccccEEccccccEEEEEEcccccHHHHHHcc
msvsnddenkvfgivfrtppkdstgiphilehsvlcgsrkyplkepFVELLKGSLNTFlnaftypdrtcypvastntkdfyNLVDVYFDAVFFPKCVEDFQTFqqegwhfkldnpseditykgvvfnemkgvysqpdniLGRAAQqalfpdnaygvdsggdpkvipkltFEEFKEFHrkyyhpsnariwfygdddpneRLRILSEASMNTIEFslrenntgsfprGLSLMLRSMGkwiydmnpfeplkyekPLMALKARLAEEGSKAVFSPLIEkyilnnphcvtvemqpdpekasrDEAAEKEILAKVKSSMTKEDLAELARATEELRlkqetpdppealrsvpslslrdipkepirvptevgdingvkvlqhdlftndvLYTEVVFDMSSLKQELLPLIPLFCQSLKemgtkdlsfVQLDQligrktggisvypftssihgkedpcccmvvrgkamagqAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMEnrlrgsghGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSregclinmtadgknlknsERFVGKFldmlptnspvervkwkahlpsaneaiviptqvnyvgKAANIFETGYKLNGSAYVISKHISNVWLWdrvrvsggayggfcdfdshsGVILIFILsgpqlvkntrhi
msvsnddenkvFGIVFrtppkdstgipHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIefslrenntgsfprGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILakvkssmtkeDLAELARATEElrlkqetpdppealrsvpslslrdipkepirvptevgdingVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFtssihgkedPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLInmtadgknlknSERFVGKFLDMLPTNSPVERVKWKAHLPSaneaiviptqvNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFIlsgpqlvkntrhi
MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI
**********VFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTV**********************************************************************IRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQF*****************GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQL*******
MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKAS**EAAEK*****************LARATE********************LSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSK***********HGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDM****************PSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQL*K*****
********NKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQP*********AAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI
*SVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI
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MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query691 2.2.26 [Sep-21-2011]
Q8VY06 1080 Presequence protease 2, c yes no 0.698 0.447 0.788 0.0
Q9LJL3 1080 Presequence protease 1, c no no 0.698 0.447 0.782 0.0
Q46205 973 Protein HypA OS=Clostridi yes no 0.296 0.210 0.582 4e-75
Q7ZVZ6 1023 Presequence protease, mit yes no 0.319 0.216 0.482 3e-59
Q5JRX3 1037 Presequence protease, mit yes no 0.303 0.202 0.483 6e-57
Q6PF24 1027 Presequence protease, mit N/A no 0.276 0.185 0.510 6e-56
Q28BR5 1027 Presequence protease, mit yes no 0.303 0.204 0.474 7e-56
Q8K411 1036 Presequence protease, mit yes no 0.303 0.202 0.469 1e-55
Q5RDG3 1037 Presequence protease, mit yes no 0.303 0.202 0.474 3e-55
O42908 882 Mitochondrial presequence no no 0.309 0.242 0.481 8e-51
>sp|Q8VY06|PREP2_ARATH Presequence protease 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP2 PE=1 SV=1 Back     alignment and function desciption
 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 381/483 (78%), Positives = 430/483 (89%)

Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
           EASMNTIEFSLRENNTGS PRGLSLML+S+ KWIYDM+PFEPLKYE+PL +LKAR+AE+G
Sbjct: 482 EASMNTIEFSLRENNTGSSPRGLSLMLQSIAKWIYDMDPFEPLKYEEPLKSLKARIAEKG 541

Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
           SK+VFSPLIE+YILNNPHCVT+EMQPDPEKAS +EA EK IL KVK+SMT+EDL ELARA
Sbjct: 542 SKSVFSPLIEEYILNNPHCVTIEMQPDPEKASLEEAEEKSILEKVKASMTEEDLTELARA 601

Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
           TEELRLKQETPDPP+AL+ VPSL+L DIPKEPI VPTEVGDINGVKVL++DLFTN++LYT
Sbjct: 602 TEELRLKQETPDPPDALKCVPSLNLSDIPKEPIYVPTEVGDINGVKVLRNDLFTNNILYT 661

Query: 385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
           EVVFDM S+K ELL LIPLFCQSL EMGT+DL+FVQL+QLIGRKTGGISVYP TSS++G+
Sbjct: 662 EVVFDMGSVKHELLQLIPLFCQSLLEMGTQDLTFVQLNQLIGRKTGGISVYPLTSSVYGR 721

Query: 445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
           +DPC  ++VRGK+M G+AEDLFNL NCVLQEV+ TDQQRFKQFVSQS+ARMENRLRGSG 
Sbjct: 722 DDPCSKIIVRGKSMVGRAEDLFNLMNCVLQEVRFTDQQRFKQFVSQSRARMENRLRGSGQ 781

Query: 505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
           GIAAARMDA LN AGW+SEQMGG+SYLEFL  LE+KVDQDW GISSSLEEIRRSFLSR G
Sbjct: 782 GIAAARMDAMLNVAGWMSEQMGGLSYLEFLHTLEQKVDQDWEGISSSLEEIRRSFLSRNG 841

Query: 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
           C++NMTADGK+L N+E++VGKFLD+LP N   E V W A LP  NEAIVIPTQVNYVGKA
Sbjct: 842 CIVNMTADGKSLTNTEKYVGKFLDLLPENPSGELVTWDARLPLRNEAIVIPTQVNYVGKA 901

Query: 625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQL 684
            NI+ +GYKL+GS+YVISKHISN WLWDRVRVSGGAYGG CDFDSHSGV        P L
Sbjct: 902 GNIYSSGYKLDGSSYVISKHISNTWLWDRVRVSGGAYGGSCDFDSHSGVFSFLSYRDPNL 961

Query: 685 VKN 687
           +K 
Sbjct: 962 LKT 964
ATP-independent protease that degrades both mitochondrial and chloroplastic transit peptides after their cleavage. Also degrades other unstructured peptides. Specific for peptides in the range of 10 to 65 residues. Shows a preference for cleavage after small polar residues and before basic residues, but without any positional preference.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 4EC: .EC: 2EC: 4EC: .EC: -
>sp|Q9LJL3|PREP1_ARATH Presequence protease 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PREP1 PE=1 SV=2 Back     alignment and function description
>sp|Q46205|HYPA_CLOPE Protein HypA OS=Clostridium perfringens (strain 13 / Type A) GN=hypA PE=4 SV=2 Back     alignment and function description
>sp|Q7ZVZ6|PREP_DANRE Presequence protease, mitochondrial OS=Danio rerio GN=pitrm1 PE=2 SV=1 Back     alignment and function description
>sp|Q5JRX3|PREP_HUMAN Presequence protease, mitochondrial OS=Homo sapiens GN=PITRM1 PE=1 SV=2 Back     alignment and function description
>sp|Q6PF24|PREP_XENLA Presequence protease, mitochondrial OS=Xenopus laevis GN=pitrm1 PE=2 SV=1 Back     alignment and function description
>sp|Q28BR5|PREP_XENTR Presequence protease, mitochondrial OS=Xenopus tropicalis GN=pitrm1 PE=2 SV=1 Back     alignment and function description
>sp|Q8K411|PREP_MOUSE Presequence protease, mitochondrial OS=Mus musculus GN=Pitrm1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RDG3|PREP_PONAB Presequence protease, mitochondrial OS=Pongo abelii GN=PITRM1 PE=2 SV=1 Back     alignment and function description
>sp|O42908|CYM1_SCHPO Mitochondrial presequence protease OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cym1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
326488169 957 predicted protein [Hordeum vulgare subsp 0.975 0.704 0.666 0.0
357137984 961 PREDICTED: presequence protease 1, chlor 0.981 0.705 0.667 0.0
225428772 1080 PREDICTED: presequence protease 2, chlor 0.698 0.447 0.838 0.0
297741302 1098 unnamed protein product [Vitis vinifera] 0.672 0.423 0.838 0.0
224123316 1007 predicted protein [Populus trichocarpa] 0.693 0.475 0.832 0.0
224103569 1006 predicted protein [Populus trichocarpa] 0.694 0.477 0.826 0.0
255555501774 zinc metalloprotease, putative [Ricinus 0.698 0.624 0.817 0.0
356497516 1078 PREDICTED: presequence protease 2, chlor 0.698 0.448 0.805 0.0
358343875698 Presequence protease [Medicago truncatul 0.698 0.691 0.793 0.0
449495595 1084 PREDICTED: LOW QUALITY PROTEIN: preseque 0.698 0.445 0.815 0.0
>gi|326488169|dbj|BAJ89923.1| predicted protein [Hordeum vulgare subsp. vulgare] Back     alignment and taxonomy information
 Score =  961 bits (2485), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 480/720 (66%), Positives = 555/720 (77%), Gaps = 46/720 (6%)

Query: 1   MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLN 60
           MSV+NDDENKVFGIVFRTPPK+STGIPHILEHSVLCGSRKYPLKEPFVELLKGSL+TFLN
Sbjct: 136 MSVANDDENKVFGIVFRTPPKNSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLHTFLN 195

Query: 61  AFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDIT 120
           AFTYPDRTCYPVASTNTKDFYNLVDVY DAVFFPKCVEDFQTFQQEGWH++L+NP E+I+
Sbjct: 196 AFTYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVEDFQTFQQEGWHYELNNPEEEIS 255

Query: 121 YKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKY 180
           YKGVVFNEMKGVYSQPDNI+GR +QQAL PDN YGVDSGGDP  IP LTFEEFKEFHRK+
Sbjct: 256 YKGVVFNEMKGVYSQPDNIMGRVSQQALSPDNTYGVDSGGDPNEIPNLTFEEFKEFHRKF 315

Query: 181 YHPSNARIWFYGDDDPNERLRILSEASMNTIEFSLRENNTGSFPRGL------------- 227
           YHPSNARIWFYGDDD  ERLRILSE  ++  E S   N +   P+ L             
Sbjct: 316 YHPSNARIWFYGDDDTKERLRILSEY-LDLFEASPARNESKVMPQRLFKEPVRIAEKYPA 374

Query: 228 ----SLMLRSM--GKWIYDMNPFE-----------PLKYEKPLMALKARLAEEG-SKAVF 269
                L  + M    W+    P +            L    P   L+  L E G  +A+ 
Sbjct: 375 GQEGDLKKKYMVCTNWLLSEEPLDVETELALGFLDHLLLGTPASPLRRILLESGLGEAIV 434

Query: 270 SPLIEKYILNNPHCVTVEMQPDPEKASRD--EAAEKEILAKVKSSMTKEDLAELARATEE 327
              +E  +L     + ++        S D  E  E+ ++  +K      +LAELARAT+E
Sbjct: 435 GGGVEDELLQPQFSIGLK------GVSEDNIEKVEELVMQILK------NLAELARATKE 482

Query: 328 LRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVV 387
           L+ KQETPDPPEAL++VPSLSL+DIPK+PI VP EVG+INGVKVLQHDLFTNDV+Y+EVV
Sbjct: 483 LKDKQETPDPPEALKAVPSLSLQDIPKKPIHVPIEVGEINGVKVLQHDLFTNDVVYSEVV 542

Query: 388 FDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDP 447
           FDM S+K+E L L+PLFCQSL EMGTKD+ FVQL+QLIGRKTGGISVYP TSSI G +DP
Sbjct: 543 FDMGSMKKEHLQLLPLFCQSLLEMGTKDMDFVQLNQLIGRKTGGISVYPLTSSIKGTDDP 602

Query: 448 CCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIA 507
              +VVRGKAM+ + EDLF+L NC+LQ+VQ T+QQRFKQFVSQSKARMENRLRGSGHGIA
Sbjct: 603 LTRIVVRGKAMSTRVEDLFHLMNCLLQDVQFTEQQRFKQFVSQSKARMENRLRGSGHGIA 662

Query: 508 AARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLI 567
           AARMDAKLN AGWISEQMGGVSYLE+L+ LE K+DQDW  IS+SLEE+R+S  S+EGCLI
Sbjct: 663 AARMDAKLNAAGWISEQMGGVSYLEYLRDLETKIDQDWDRISASLEEMRKSLFSKEGCLI 722

Query: 568 NMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKAANI 627
           N+T+D KNL+ S + + KFLD LP+   +    W + LPS NEAIVIPTQVNYVGKA N+
Sbjct: 723 NITSDSKNLEKSGQHIAKFLDALPSAPSLGSDPWLSRLPSVNEAIVIPTQVNYVGKAGNL 782

Query: 628 FETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKN 687
           +++GY+LNGSAYVISKHISN WLWDRVRVSGGAYGGFCDFD+HSGV        P L+K 
Sbjct: 783 YQSGYQLNGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDTHSGVFSYLSYRDPNLLKT 842

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357137984|ref|XP_003570578.1| PREDICTED: presequence protease 1, chloroplastic/mitochondrial-like isoform 2 [Brachypodium distachyon] Back     alignment and taxonomy information
>gi|225428772|ref|XP_002282024.1| PREDICTED: presequence protease 2, chloroplastic/mitochondrial-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297741302|emb|CBI32433.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224123316|ref|XP_002330286.1| predicted protein [Populus trichocarpa] gi|222871321|gb|EEF08452.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224103569|ref|XP_002313107.1| predicted protein [Populus trichocarpa] gi|222849515|gb|EEE87062.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255555501|ref|XP_002518787.1| zinc metalloprotease, putative [Ricinus communis] gi|223542168|gb|EEF43712.1| zinc metalloprotease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356497516|ref|XP_003517606.1| PREDICTED: presequence protease 2, chloroplastic/mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|358343875|ref|XP_003636021.1| Presequence protease [Medicago truncatula] gi|355501956|gb|AES83159.1| Presequence protease [Medicago truncatula] Back     alignment and taxonomy information
>gi|449495595|ref|XP_004159889.1| PREDICTED: LOW QUALITY PROTEIN: presequence protease 1, chloroplastic/mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
TAIR|locus:2012176 1080 PREP2 "presequence protease 2" 0.697 0.446 0.790 2.6e-312
TAIR|locus:2094138 1080 PREP1 "presequence protease 1" 0.697 0.446 0.784 4.3e-310
DICTYBASE|DDB_G0271506 1066 pitrm1 "peptidase M16 family p 0.311 0.201 0.454 3e-93
ZFIN|ZDB-GENE-040426-2876 1023 pitrm1 "pitrilysin metalloprot 0.319 0.216 0.482 1.9e-91
RGD|1310998 954 Pitrm1 "pitrilysin metallopept 0.312 0.226 0.470 1e-89
UNIPROTKB|F1NGG7 1032 PITRM1 "Uncharacterized protei 0.312 0.209 0.466 1.1e-88
UNIPROTKB|E1C9F5 1033 PITRM1 "Uncharacterized protei 0.312 0.209 0.466 1.1e-88
UNIPROTKB|F1P2D3 1038 PITRM1 "Uncharacterized protei 0.312 0.208 0.466 1.2e-88
UNIPROTKB|C9JSL2 1038 PITRM1 "Presequence protease, 0.303 0.202 0.483 5.5e-88
UNIPROTKB|Q5JRX3 1037 PITRM1 "Presequence protease, 0.303 0.202 0.483 6.9e-88
TAIR|locus:2012176 PREP2 "presequence protease 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2011 (713.0 bits), Expect = 2.6e-312, Sum P(2) = 2.6e-312
 Identities = 381/482 (79%), Positives = 430/482 (89%)

Query:   205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
             EASMNTIEFSLRENNTGS PRGLSLML+S+ KWIYDM+PFEPLKYE+PL +LKAR+AE+G
Sbjct:   482 EASMNTIEFSLRENNTGSSPRGLSLMLQSIAKWIYDMDPFEPLKYEEPLKSLKARIAEKG 541

Query:   265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
             SK+VFSPLIE+YILNNPHCVT+EMQPDPEKAS +EA EK IL KVK+SMT+EDL ELARA
Sbjct:   542 SKSVFSPLIEEYILNNPHCVTIEMQPDPEKASLEEAEEKSILEKVKASMTEEDLTELARA 601

Query:   325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
             TEELRLKQETPDPP+AL+ VPSL+L DIPKEPI VPTEVGDINGVKVL++DLFTN++LYT
Sbjct:   602 TEELRLKQETPDPPDALKCVPSLNLSDIPKEPIYVPTEVGDINGVKVLRNDLFTNNILYT 661

Query:   385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
             EVVFDM S+K ELL LIPLFCQSL EMGT+DL+FVQL+QLIGRKTGGISVYP TSS++G+
Sbjct:   662 EVVFDMGSVKHELLQLIPLFCQSLLEMGTQDLTFVQLNQLIGRKTGGISVYPLTSSVYGR 721

Query:   445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
             +DPC  ++VRGK+M G+AEDLFNL NCVLQEV+ TDQQRFKQFVSQS+ARMENRLRGSG 
Sbjct:   722 DDPCSKIIVRGKSMVGRAEDLFNLMNCVLQEVRFTDQQRFKQFVSQSRARMENRLRGSGQ 781

Query:   505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
             GIAAARMDA LN AGW+SEQMGG+SYLEFL  LE+KVDQDW GISSSLEEIRRSFLSR G
Sbjct:   782 GIAAARMDAMLNVAGWMSEQMGGLSYLEFLHTLEQKVDQDWEGISSSLEEIRRSFLSRNG 841

Query:   565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
             C++NMTADGK+L N+E++VGKFLD+LP N   E V W A LP  NEAIVIPTQVNYVGKA
Sbjct:   842 CIVNMTADGKSLTNTEKYVGKFLDLLPENPSGELVTWDARLPLRNEAIVIPTQVNYVGKA 901

Query:   625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQL 684
              NI+ +GYKL+GS+YVISKHISN WLWDRVRVSGGAYGG CDFDSHSGV        P L
Sbjct:   902 GNIYSSGYKLDGSSYVISKHISNTWLWDRVRVSGGAYGGSCDFDSHSGVFSFLSYRDPNL 961

Query:   685 VK 686
             +K
Sbjct:   962 LK 963
GO:0003824 "catalytic activity" evidence=IEA
GO:0004222 "metalloendopeptidase activity" evidence=IEA;ISS
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008237 "metallopeptidase activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0046872 "metal ion binding" evidence=IEA
GO:0005739 "mitochondrion" evidence=IDA
GO:0016485 "protein processing" evidence=IDA
TAIR|locus:2094138 PREP1 "presequence protease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271506 pitrm1 "peptidase M16 family protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2876 pitrm1 "pitrilysin metalloproteinase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1310998 Pitrm1 "pitrilysin metallopeptidase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1NGG7 PITRM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C9F5 PITRM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2D3 PITRM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|C9JSL2 PITRM1 "Presequence protease, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5JRX3 PITRM1 "Presequence protease, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8VY06PREP2_ARATH3, ., 4, ., 2, 4, ., -0.78880.69890.4472yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.240.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
COG1026 978 COG1026, COG1026, Predicted Zn-dependent peptidase 3e-99
COG1026 978 COG1026, COG1026, Predicted Zn-dependent peptidase 2e-94
pfam08367248 pfam08367, M16C_assoc, Peptidase M16C associated 1e-69
PTZ00432 1119 PTZ00432, PTZ00432, falcilysin; Provisional 3e-63
PTZ00432 1119 PTZ00432, PTZ00432, falcilysin; Provisional 1e-61
COG0612438 COG0612, PqqL, Predicted Zn-dependent peptidases [ 1e-19
COG1025 937 COG1025, Ptr, Secreted/periplasmic Zn-dependent pe 3e-11
pfam00675149 pfam00675, Peptidase_M16, Insulinase (Peptidase fa 2e-06
pfam05193182 pfam05193, Peptidase_M16_C, Peptidase M16 inactive 3e-06
PRK15101 961 PRK15101, PRK15101, protease3; Provisional 3e-05
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information 
 Score =  326 bits (837), Expect = 3e-99
 Identities = 116/205 (56%), Positives = 150/205 (73%), Gaps = 3/205 (1%)

Query: 1   MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLN 60
             + N+D N VF I F+T P DSTG+ HILEH+VLCGS+KYP+K+PF ++LK SLNTFLN
Sbjct: 34  AHIKNEDPNNVFSIAFKTEPHDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLN 93

Query: 61  AFTYPDRTCYPVASTNTKDFYNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDIT 120
           AFT+PD+T YP +S N KDFYNL+ VY DAVF P   +  ++F QEGW  +  + S  + 
Sbjct: 94  AFTFPDKTVYPASSANEKDFYNLLSVYLDAVFHPLLTK--ESFLQEGWRIEFKDESN-LK 150

Query: 121 YKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGGDPKVIPKLTFEEFKEFHRKY 180
           YKGVV+NEMKG YS  +++L RA QQ+LFP   YGV+SGGDPK IP LT+EEF+ FH+K+
Sbjct: 151 YKGVVYNEMKGAYSSGESVLSRAMQQSLFPGTTYGVNSGGDPKNIPDLTYEEFRAFHKKH 210

Query: 181 YHPSNARIWFYGDDDPNERLRILSE 205
           YHPSN +I+ YG+      L  + E
Sbjct: 211 YHPSNCKIFVYGNIPTERLLDFIEE 235

Length = 978
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated Back     alignment and domain information
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional Back     alignment and domain information
>gnl|CDD|240416 PTZ00432, PTZ00432, falcilysin; Provisional Back     alignment and domain information
>gnl|CDD|223685 COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223956 COG1025, Ptr, Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|216056 pfam00675, Peptidase_M16, Insulinase (Peptidase family M16) Back     alignment and domain information
>gnl|CDD|218490 pfam05193, Peptidase_M16_C, Peptidase M16 inactive domain Back     alignment and domain information
>gnl|CDD|185056 PRK15101, PRK15101, protease3; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 691
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 100.0
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 100.0
PTZ00432 1119 falcilysin; Provisional 100.0
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 100.0
PRK15101 961 protease3; Provisional 100.0
TIGR02110 696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
PF08367248 M16C_assoc: Peptidase M16C associated; InterPro: I 100.0
COG0612438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
COG0612 438 PqqL Predicted Zn-dependent peptidases [General fu 100.0
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 100.0
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 100.0
TIGR02110696 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable pe 100.0
KOG0960467 consensus Mitochondrial processing peptidase, beta 100.0
KOG0960 467 consensus Mitochondrial processing peptidase, beta 99.97
PRK15101 961 protease3; Provisional 99.96
PTZ00432 1119 falcilysin; Provisional 99.91
KOG2067472 consensus Mitochondrial processing peptidase, alph 99.91
KOG2067 472 consensus Mitochondrial processing peptidase, alph 99.88
COG1025 937 Ptr Secreted/periplasmic Zn-dependent peptidases, 99.81
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.79
KOG0959 974 consensus N-arginine dibasic convertase NRD1 and r 99.78
PF00675149 Peptidase_M16: Insulinase (Peptidase family M16) T 99.61
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.57
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 99.47
KOG2583429 consensus Ubiquinol cytochrome c reductase, subuni 99.41
COG1026 978 Predicted Zn-dependent peptidases, insulinase-like 99.25
PF05193184 Peptidase_M16_C: Peptidase M16 inactive domain; In 98.99
KOG0961 1022 consensus Predicted Zn2+-dependent endopeptidase, 98.86
KOG2019 998 consensus Metalloendoprotease HMP1 (insulinase sup 98.53
PF03410 590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 91.22
PF03410590 Peptidase_M44: Protein G1; InterPro: IPR005072 In 90.6
PHA03081595 putative metalloprotease; Provisional 86.21
PHA03081 595 putative metalloprotease; Provisional 85.2
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=6.9e-108  Score=838.79  Aligned_cols=682  Identities=57%  Similarity=0.911  Sum_probs=631.2

Q ss_pred             CeeeecCCCcEEEEEecCCCCCCCChhHHHHHhhccCCCCCCCCcHHHHHHhhccCcccceeecCCceEEEeecCCHhhH
Q 005555            1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF   80 (691)
Q Consensus         1 ~~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~~~~~~g~~~na~t~~d~t~y~~~~~~~~~~   80 (691)
                      +|+.++|.|++|.++++++|.+.+|++|+|||.++|||.+||.+++|.+||.+++.+++||+|.+|+|+|+++++|++|+
T Consensus        66 lhl~reD~N~vFsI~FrTpp~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~pD~T~yPfattN~kDf  145 (998)
T KOG2019|consen   66 LHLDREDENNVFSIVFRTPPKDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAPDYTFYPFATTNTKDF  145 (998)
T ss_pred             EeeccCCCCceeEEEeecCCCccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCCCcceeecccCChHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhCCCCcccchhhhhcccccccCCCCC---CccchhHHHHHHhhhcCChHHHHHHHHHHHhCCCCCCCCC
Q 005555           81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSE---DITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVD  157 (691)
Q Consensus        81 ~~~l~~~~~~~~~P~~~~~~~~f~~e~~~~~~~~~~~---~~~~~~~v~~e~~~~~~~p~~~~~~~~~~~l~~~~~~~~~  157 (691)
                      .++.++|+|+.+.|.+...+  |.|||||+|..++..   ++..||||++||++..++|++.++..+++++||++.|+..
T Consensus       146 ~NL~dVYLDAtffPklr~~d--F~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~Qq~L~p~~tYgv~  223 (998)
T KOG2019|consen  146 YNLRDVYLDATFFPKLRKLD--FQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLFQQALFPENTYGVN  223 (998)
T ss_pred             HHHHHHhhhcccchHHHhhh--hhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHHHHhhCcccccccc
Confidence            99999999999999999888  999999999876554   4559999999999999999999999999999999999999


Q ss_pred             CCCCcCccCCCCHHHHHHHHHhhcCCCCeEEEEEeCCCHHHHHHHhh---------------------------------
Q 005555          158 SGGDPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILS---------------------------------  204 (691)
Q Consensus       158 ~~G~~~~i~~lt~e~l~~fy~~~y~p~n~~l~v~G~~d~~~~~~~i~---------------------------------  204 (691)
                      ++|+|-+|.++|+|++++||++||||+|+.|+.+||++.++++.+++                                 
T Consensus       224 SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~f~kp~rvve~~p~  303 (998)
T KOG2019|consen  224 SGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKLFDKPRRVVEKGPA  303 (998)
T ss_pred             CCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccccccCceeeeecCC
Confidence            99999999999999999999999999999999999999999999987                                 


Q ss_pred             --------------------------------------------------------------------------------
Q 005555          205 --------------------------------------------------------------------------------  204 (691)
Q Consensus       205 --------------------------------------------------------------------------------  204 (691)
                                                                                                      
T Consensus       304 d~~~~p~Kq~~~s~s~L~~~p~d~~etfaL~~L~~Ll~~gpsSp~yk~LiESGLGtEfsvnsG~~~~t~~~~fsVGLqGv  383 (998)
T KOG2019|consen  304 DPGDLPKKQTKCSNSFLSNDPLDTYETFALKVLSHLLLDGPSSPFYKALIESGLGTEFSVNSGYEDTTLQPQFSVGLQGV  383 (998)
T ss_pred             CCCCCccceeEEEEEeecCCchhHHHHHHHHHHHHHhcCCCccHHHHHHHHcCCCcccccCCCCCcccccceeeeeeccc
Confidence                                                                                            


Q ss_pred             -----------------------------hcccccccccccccCCCCchhhHHHHHhhhcccccCCCCcCCcCCchHHHH
Q 005555          205 -----------------------------EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMA  255 (691)
Q Consensus       205 -----------------------------~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  255 (691)
                                                   ++.++++|+..++...   ..|+.++.++.+.|.++.||++.|.+...+..
T Consensus       384 seediekve~lV~~t~~~lae~gfd~drieAil~qiEislk~qst---~fGL~L~~~i~~~W~~d~DPfE~Lk~~~~L~~  460 (998)
T KOG2019|consen  384 SEEDIEKVEELVMNTFNKLAETGFDNDRIEAILHQIEISLKHQST---GFGLSLMQSIISKWINDMDPFEPLKFEEQLKK  460 (998)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHhhhhhhcccc---chhHHHHHHHhhhhccCCCccchhhhhhHHHH
Confidence                                         2234444444442222   23888889999999999999999999999999


Q ss_pred             HHHHHhccCChhhHHHHHHHhcccCCCeeEEEEecCcCchhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCC
Q 005555          256 LKARLAEEGSKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARATEELRLKQETP  335 (691)
Q Consensus       256 l~~~l~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~eel~~~k~~~~~~~~~~~~~  335 (691)
                      |+++++++ +..+|+.++++|+.++++.+++++.|+++..+.++++++.++++++..+|++|++.+.+...++.+.|+  
T Consensus       461 lk~~l~ek-~~~lfq~lIkkYilnn~h~~t~smqpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~eL~~kQ~--  537 (998)
T KOG2019|consen  461 LKQRLAEK-SKKLFQPLIKKYILNNPHCFTFSMQPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAGEELREKQS--  537 (998)
T ss_pred             HHHHHhhh-chhHHHHHHHHHHhcCCceEEEEecCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhhC--
Confidence            99999876 567999999999999999999999999999999999999999999999999999999998888888776  


Q ss_pred             CChhhhccCCCCCccCCCCCCCCCCCcccccCCceEEEeecCCCcEEEEEEEeeCCCCCcccccChHHHHHHhhhcCCCC
Q 005555          336 DPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQSLKEMGTKD  415 (691)
Q Consensus       336 ~s~~~l~~~~~~~~~di~~~~~~~~~~~~~~nG~~v~~~~~~~~~~v~~~~~f~~g~~~~~~~~~~~~~~~~l~~~Gt~~  415 (691)
                       .|+++.++|++.++||++.+...++++...||++|.++..+||+++|+++.+++++++++..+|+++||+.|++.||+.
T Consensus       538 -tp~dlsClPtL~vsDIp~~~~~~~~~v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~eL~PylPlfc~sll~lGt~~  616 (998)
T KOG2019|consen  538 -TPEDLSCLPTLNVSDIPKTIPYTKLEVGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEELLPYLPLFCQSLLNLGTGD  616 (998)
T ss_pred             -CccccccccccccccCCCCCCccceeeeeccCceeEEeeccCCceEEEEEeeccccCcHHhhcchHHHHHHHHhcCCCc
Confidence             5689999999999999999888888888999999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhhcccceEEeeeeccCCCCCCCeeEEEEEEEeccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Q 005555          416 LSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARM  495 (691)
Q Consensus       416 ~~~~el~~~ie~~gg~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ll~dil~~p~f~~~e~~~~~~~~~~~~~  495 (691)
                      .+..|+.+.|.+.+|++++++..+++.+.+.|.-.+.+++.|+.++.+++++|+..++.+++|.+.++++.++++..+++
T Consensus       617 lsf~el~qqI~rkTGGiS~~p~~~s~~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~  696 (998)
T KOG2019|consen  617 LSFVELEQQIGRKTGGISVSPLVSSDDGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRM  696 (998)
T ss_pred             ccHHHHHHHhhhhcCceeecceeccCCCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHh
Confidence            99999999999999999999998888899999989999999999999999999999999999998899999999999999


Q ss_pred             hhhhccCcHHHHHHHHHhccChhhhHHHHhchhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHcCCCCcEEEEEeCccc
Q 005555          496 ENRLRGSGHGIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKN  575 (691)
Q Consensus       496 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~~n~~v~v~Gd~~~  575 (691)
                      .+.+.++||.+|..++.+.+.+.+++.+.++|+.+.+++..+.+..+.+|+.+.+.|.++++.+.+.+||++.|+.|...
T Consensus       697 ~n~i~dsGH~~A~~rs~a~l~~ag~i~EqlgGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q  776 (998)
T KOG2019|consen  697 TNGIADSGHGFAAARSAAMLTPAGWISEQLGGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQ  776 (998)
T ss_pred             hccCCcccchhHhhhhhcccCcccchHhHhcchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence            99999999999999999999999999999999999999999999888899999999999999999999999999999988


Q ss_pred             hhhHHHHHHHHHhcCCCC-CCcccccccccCCCCceEE--EeC-cCeeEEEEecccCCCCCCcchHHHHHHHhhcCccch
Q 005555          576 LKNSERFVGKFLDMLPTN-SPVERVKWKAHLPSANEAI--VIP-TQVNYVGKAANIFETGYKLNGSAYVISKHISNVWLW  651 (691)
Q Consensus       576 ~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~--~~~-~~~~~v~~~~~~~~~~~~d~~al~vl~~iLg~srL~  651 (691)
                      ...+++.+++|+..+|.. +......+....+-+.+++  ..| .|++|++.+..+++++|||-++++|++..|...+||
T Consensus       777 ~~~vEkav~kFl~~lp~e~p~g~~st~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vpyt~~d~asl~vlS~~lt~k~Lh  856 (998)
T KOG2019|consen  777 LTNVEKAVEKFLDSLPRENPSGSKSTWDARLPLRSEAIRVVIPTFQVNYVGKAGLGVPYTHPDGASLQVLSKLLTNKWLH  856 (998)
T ss_pred             chhHHHHHHHHHHhccccCCCCCccCccccCCCCceeEEEeccccchhhhhhhcccccCCCCCCcHHHHHHHHHHHHHHH
Confidence            888999999999999853 3332333333333334443  667 568999999999999999999999999999999999


Q ss_pred             hhhhccCCCCCccceecCCCceEEEEEeeCCChhhhhhhC
Q 005555          652 DRVRVSGGAYGGFCDFDSHSGVILIFILSGPQLVKNTRHI  691 (691)
Q Consensus       652 ~~IRekGlaYgv~~~~~~~~g~~~f~~y~~p~~~~t~~~~  691 (691)
                      .+|||||||||.+|++++..|.|+|++|||||+.+|+++|
T Consensus       857 ~evRekGGAYGgg~s~~sh~GvfSf~SYRDpn~lktL~~f  896 (998)
T KOG2019|consen  857 DEVREKGGAYGGGCSYSSHSGVFSFYSYRDPNPLKTLDIF  896 (998)
T ss_pred             HHHHHhcCccCCccccccccceEEEEeccCCchhhHHHhh
Confidence            9999999999999999999999999999999999999875

>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only] Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK15101 protease3; Provisional Back     alignment and domain information
>PTZ00432 falcilysin; Provisional Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion] Back     alignment and domain information
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only] Back     alignment and domain information
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information
>PHA03081 putative metalloprotease; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
2fge_A 995 Crystal Structure Of Presequence Protease Prep From 0.0
3s5h_A 1193 Crystal Structures Of Falcilysin, A M16 Metalloprot 1e-44
3s5h_A 1193 Crystal Structures Of Falcilysin, A M16 Metalloprot 1e-23
>pdb|2FGE|A Chain A, Crystal Structure Of Presequence Protease Prep From Arabidopsis Thaliana Length = 995 Back     alignment and structure 
Iteration: 1

 Score =  764 bits (1973), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/482 (76%), Positives = 411/482 (85%)
Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
           EAS NTIEFSLRENNTGSFPRGLSL L+S+ KWIYD +PFEPLKY +PL ALK R+AEEG
Sbjct: 398 EASXNTIEFSLRENNTGSFPRGLSLXLQSISKWIYDXDPFEPLKYTEPLKALKTRIAEEG 457
Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
           SKAVFSPLIEK ILNN H VT+E QPDPEKA+++E  EK IL KVK++ T+EDLAELARA
Sbjct: 458 SKAVFSPLIEKLILNNSHRVTIEXQPDPEKATQEEVEEKNILEKVKAAXTEEDLAELARA 517
Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
           TEEL+LKQETPDPPEALR VPSL+L DIPKEP  VPTEVGDINGVKVL+HDLFTND++YT
Sbjct: 518 TEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYT 577
Query: 385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
           EVVFD+ SLK ELLPL+PLFCQSL E GTKDL+FVQL+QLIGRKTGGISVYP TSS+ GK
Sbjct: 578 EVVFDIGSLKHELLPLVPLFCQSLLEXGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGK 637
Query: 445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
           ++PC  ++VRGK+ AG+A+DLFNL NC+LQEVQ TDQQRFKQFVSQS+AR ENRLRGSGH
Sbjct: 638 DEPCSKIIVRGKSXAGRADDLFNLXNCLLQEVQFTDQQRFKQFVSQSRARXENRLRGSGH 697
Query: 505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
           GIAAAR DA LN AGW SEQ GG+SYLEFL  LE+KVD+DW GISSSLEEIRRS L+R G
Sbjct: 698 GIAAARXDAXLNIAGWXSEQXGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNG 757
Query: 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
           C++N TADGK+L N E+ V KFLD+LP N     V W   LP  NEAIVIPTQVNYVGKA
Sbjct: 758 CIVNXTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIVIPTQVNYVGKA 817
Query: 625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQL 684
            NI+ TGY+L+GSAYVISKHISN WLWDRVRVSGGAYGGFCDFDSHSGV        P L
Sbjct: 818 GNIYSTGYELDGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGVFSYLSYRDPNL 877
Query: 685 VK 686
           +K
Sbjct: 878 LK 879
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From The Malaria Parasite Plasmodium Falciparum Length = 1193 Back     alignment and structure
>pdb|3S5H|A Chain A, Crystal Structures Of Falcilysin, A M16 Metalloprotease From The Malaria Parasite Plasmodium Falciparum Length = 1193 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 1e-123
2fge_A 995 Atprep2;, zinc metalloprotease (insulinase family) 4e-85
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 6e-78
3s5m_A 1193 Falcilysin; M16 metalloprotease, peptidase, hydrol 2e-75
3gwb_A434 Peptidase M16 inactive domain family protein; pept 2e-17
1q2l_A 939 Protease III; hydrolase; 2.20A {Escherichia coli s 3e-16
3amj_B424 Zinc peptidase inactive subunit; alpha/beta, zinc 1e-15
3d3y_A425 Uncharacterized protein; APC29635, conserved prote 3e-15
3cww_A 990 Insulysin, insulin-degrading enzyme, insulinase; A 5e-15
3ami_A445 Zinc peptidase; alpha/beta, zinc binding, hydrolas 5e-15
3go9_A492 Insulinase family protease; IDP00573, structural g 2e-13
3hdi_A421 Processing protease; CAGE structure, M16B peptidas 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
1pp9_A446 Ubiquinol-cytochrome C reductase complex core Pro 3e-11
1hr6_B443 Beta-MPP, mitochondrial processing peptidase beta 4e-11
3eoq_A406 Putative zinc protease; two similar domains of bet 4e-11
1hr6_A475 Alpha-MPP, mitochondrial processing peptidase alph 1e-10
3cx5_A431 Cytochrome B-C1 complex subunit 1, mitochondrial; 2e-09
1pp9_B439 Ubiquinol-cytochrome C reductase complex core Pro 5e-08
3cx5_B352 Cytochrome B-C1 complex subunit 2, mitochondrial; 4e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 8e-04
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
 Score =  390 bits (1002), Expect = e-123
 Identities = 378/482 (78%), Positives = 423/482 (87%)

Query: 205 EASMNTIEFSLRENNTGSFPRGLSLMLRSMGKWIYDMNPFEPLKYEKPLMALKARLAEEG 264
           EASMNTIEFSLRENNTGSFPRGLSLML+S+ KWIYDM+PFEPLKY +PL ALK R+AEEG
Sbjct: 398 EASMNTIEFSLRENNTGSFPRGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEG 457

Query: 265 SKAVFSPLIEKYILNNPHCVTVEMQPDPEKASRDEAAEKEILAKVKSSMTKEDLAELARA 324
           SKAVFSPLIEK ILNN H VT+EMQPDPEKA+++E  EK IL KVK++MT+EDLAELARA
Sbjct: 458 SKAVFSPLIEKLILNNSHRVTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARA 517

Query: 325 TEELRLKQETPDPPEALRSVPSLSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYT 384
           TEEL+LKQETPDPPEALR VPSL+L DIPKEP  VPTEVGDINGVKVL+HDLFTND++YT
Sbjct: 518 TEELKLKQETPDPPEALRCVPSLNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYT 577

Query: 385 EVVFDMSSLKQELLPLIPLFCQSLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGK 444
           EVVFD+ SLK ELLPL+PLFCQSL EMGTKDL+FVQL+QLIGRKTGGISVYP TSS+ GK
Sbjct: 578 EVVFDIGSLKHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGK 637

Query: 445 EDPCCCMVVRGKAMAGQAEDLFNLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGH 504
           ++PC  ++VRGK+MAG+A+DLFNL NC+LQEVQ TDQQRFKQFVSQS+ARMENRLRGSGH
Sbjct: 638 DEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGH 697

Query: 505 GIAAARMDAKLNTAGWISEQMGGVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREG 564
           GIAAARMDA LN AGW+SEQMGG+SYLEFL  LE+KVD+DW GISSSLEEIRRS L+R G
Sbjct: 698 GIAAARMDAMLNIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNG 757

Query: 565 CLINMTADGKNLKNSERFVGKFLDMLPTNSPVERVKWKAHLPSANEAIVIPTQVNYVGKA 624
           C++NMTADGK+L N E+ V KFLD+LP N     V W   LP  NEAIVIPTQVNYVGKA
Sbjct: 758 CIVNMTADGKSLTNVEKSVAKFLDLLPENPSGGLVTWDGRLPLRNEAIVIPTQVNYVGKA 817

Query: 625 ANIFETGYKLNGSAYVISKHISNVWLWDRVRVSGGAYGGFCDFDSHSGVILIFILSGPQL 684
            NI+ TGY+L+GSAYVISKHISN WLWDRVRVSGGAYGGFCDFDSHSGV        P L
Sbjct: 818 GNIYSTGYELDGSAYVISKHISNTWLWDRVRVSGGAYGGFCDFDSHSGVFSYLSYRDPNL 877

Query: 685 VK 686
           +K
Sbjct: 878 LK 879
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 995 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A Length = 1193 Back     alignment and structure
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens} Length = 434 Back     alignment and structure
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1 Length = 939 Back     alignment and structure
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas} Length = 424 Back     alignment and structure
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis} Length = 425 Back     alignment and structure
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ... Length = 990 Back     alignment and structure
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C Length = 445 Back     alignment and structure
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis} Length = 492 Back     alignment and structure
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125} Length = 421 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ... Length = 446 Back     alignment and structure
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B* Length = 443 Back     alignment and structure
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus} Length = 406 Back     alignment and structure
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A* Length = 475 Back     alignment and structure
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A* Length = 431 Back     alignment and structure
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ... Length = 439 Back     alignment and structure
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B* Length = 352 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 691
d2fgea1258 d.185.1.1 (A:540-797) Presequence protease 1, PREP 1e-78
d2fgea4257 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 6e-49
d2fgea3268 d.185.1.1 (A:272-539) Presequence protease 1, PREP 9e-46
d2fgea2 196 d.185.1.1 (A:798-993) Presequence protease 1, PREP 8e-21
d1ppja1232 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 6e-11
d3cx5a1213 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 5e-09
d1hr6b1222 d.185.1.1 (B:24-245) Mitochondrial processing pept 7e-09
d1ppjb1219 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 5e-08
d1hr6a1220 d.185.1.1 (A:14-233) Mitochondrial processing pept 7e-08
d3cx5b1202 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 6e-07
d1q2la4240 d.185.1.1 (A:24-263) Protease III {Escherichia col 2e-06
d1q2la1229 d.185.1.1 (A:504-732) Protease III {Escherichia co 2e-05
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 258 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Presequence protease 1, PREP1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  249 bits (637), Expect = 1e-78
 Identities = 197/255 (77%), Positives = 225/255 (88%)

Query: 347 LSLRDIPKEPIRVPTEVGDINGVKVLQHDLFTNDVLYTEVVFDMSSLKQELLPLIPLFCQ 406
           L+L DIPKEP  VPTEVGDINGVKVL+HDLFTND++YTEVVFD+ SLK ELLPL+PLFCQ
Sbjct: 1   LNLGDIPKEPTYVPTEVGDINGVKVLRHDLFTNDIIYTEVVFDIGSLKHELLPLVPLFCQ 60

Query: 407 SLKEMGTKDLSFVQLDQLIGRKTGGISVYPFTSSIHGKEDPCCCMVVRGKAMAGQAEDLF 466
           SL EMGTKDL+FVQL+QLIGRKTGGISVYP TSS+ GK++PC  ++VRGK+MAG+A+DLF
Sbjct: 61  SLLEMGTKDLTFVQLNQLIGRKTGGISVYPLTSSVRGKDEPCSKIIVRGKSMAGRADDLF 120

Query: 467 NLFNCVLQEVQLTDQQRFKQFVSQSKARMENRLRGSGHGIAAARMDAKLNTAGWISEQMG 526
           NL NC+LQEVQ TDQQRFKQFVSQS+ARMENRLRGSGHGIAAARMDA LN AGW+SEQMG
Sbjct: 121 NLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAMLNIAGWMSEQMG 180

Query: 527 GVSYLEFLQALEEKVDQDWAGISSSLEEIRRSFLSREGCLINMTADGKNLKNSERFVGKF 586
           G+SYLEFL  LE+KVD+DW GISSSLEEIRRS L+R GC++NMTADGK+L N E+ V KF
Sbjct: 181 GLSYLEFLHTLEKKVDEDWEGISSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKF 240

Query: 587 LDMLPTNSPVERVKW 601
           LD+LP N     V W
Sbjct: 241 LDLLPENPSGGLVTW 255
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 257 Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 268 Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 196 Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Length = 232 Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213 Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 222 Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 219 Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 220 Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 202 Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Length = 240 Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Length = 229 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query691
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 100.0
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 100.0
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 100.0
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 100.0
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 100.0
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 100.0
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 100.0
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.98
d1hr6b1222 Mitochondrial processing peptidase (MPP) beta chai 99.97
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.97
d1q2la4240 Protease III {Escherichia coli [TaxId: 562]} 99.97
d1ppja1232 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.97
d1hr6a1220 Mitochondrial processing peptidase (MPP) alpha cha 99.96
d1ppjb1219 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.96
d3cx5a1213 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 99.95
d3cx5b1202 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 99.93
d2fgea4257 Presequence protease 1, PREP1 {Thale cress (Arabid 99.86
d2fgea2 196 Presequence protease 1, PREP1 {Thale cress (Arabid 99.84
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.75
d1q2la1229 Protease III {Escherichia coli [TaxId: 562]} 99.71
d2fgea3268 Presequence protease 1, PREP1 {Thale cress (Arabid 99.67
d1hr6a2237 Mitochondrial processing peptidase (MPP) alpha cha 99.27
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 99.25
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 99.24
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 99.04
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.97
d1hr6b2217 Mitochondrial processing peptidase (MPP) beta chai 98.57
d1ppjb2204 Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [T 98.52
d1ppja2209 Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [T 98.49
d1hr6a2 237 Mitochondrial processing peptidase (MPP) alpha cha 98.32
d3cx5a2218 Cytochrome bc1 core subunit 1 {Baker's yeast (Sacc 98.1
d2fgea2196 Presequence protease 1, PREP1 {Thale cress (Arabid 97.02
d2fgea1258 Presequence protease 1, PREP1 {Thale cress (Arabid 96.8
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 96.78
d1q2la2228 Protease III {Escherichia coli [TaxId: 562]} 95.56
d3cx5b2150 Cytochrome bc1 core subunit 2 {Baker's yeast (Sacc 89.22
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: LuxS/MPP-like metallohydrolase
superfamily: LuxS/MPP-like metallohydrolase
family: MPP-like
domain: Presequence protease 1, PREP1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=0  Score=297.95  Aligned_cols=212  Identities=85%  Similarity=1.437  Sum_probs=201.4

Q ss_pred             CEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCCCEEECCCCEEEEEECCCHHHH
Q ss_conf             90221499918999961899999996699988610388999987089999830028652222249936998212797649
Q 005555            1 MSVSNDDENKVFGIVFRTPPKDSTGIPHILEHSVLCGSRKYPLKEPFVELLKGSLNTFLNAFTYPDRTCYPVASTNTKDF   80 (691)
Q Consensus         1 ~~~~~~d~~~~~~~g~~~e~~~~~G~ah~lehl~~~Gs~~~~~~~~~~~~l~~~~g~~~na~t~~d~t~~~~~~~~~~~~   80 (691)
                      +++.++|.+++|.+|++++|.+++|+||+||||+|+||++||..+.+.+++.+.+|+.+||+|+.|+|+|++.+.+++++
T Consensus        36 ~~i~~~~~~~~f~i~~~t~p~~~~G~aH~LEHm~f~GS~k~p~~~~~~~~~~~~~g~~~NA~T~~d~T~Y~~~~~~~~~~  115 (257)
T d2fgea4          36 MSVSNEDENKVFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDF  115 (257)
T ss_dssp             EEEECSCSSEEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCEECSSEEEEEEEESSHHHH
T ss_pred             EEEECCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             99843997627999968999887673289999863898888987389999998438752332005677888610226669


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf             99999997412188876551013120330124899978641448998873202994899999999982799988878888
Q 005555           81 YNLVDVYFDAVFFPKCVEDFQTFQQEGWHFKLDNPSEDITYKGVVFNEMKGVYSQPDNILGRAAQQALFPDNAYGVDSGG  160 (691)
Q Consensus        81 ~~~l~~l~~~~~~p~~~~~~~~f~~e~~~~~~~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G  160 (691)
                      ..++++++|++++|.+.++...|.+++|+.++.+++...++|++|++|+++..++|..++.+.+.+.+|++|||+++++|
T Consensus       116 ~~~l~v~ld~v~~P~~~~~~~~~~~e~~~~~~~~~~~~~~ek~vV~~E~~~~~~~p~~~~~~~~~~~lf~~~py~~~~~G  195 (257)
T d2fgea4         116 YNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGRIAQQALSPENTYGVDSGG  195 (257)
T ss_dssp             HHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHHHHHHHHCTTSGGGSCTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf             87678889988582037888999998885101351678899999999998713768899999986612322114787522


Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHCCCCCCCC
Q ss_conf             86866888999999999961579970999990899889999964402644323
Q 005555          161 DPKVIPKLTFEEFKEFHRKYYHPSNARIWFYGDDDPNERLRILSEASMNTIEF  213 (691)
Q Consensus       161 ~~~~i~~it~e~l~~fy~~~y~p~n~~l~v~Gd~d~~~~~~~i~~~~~~~~e~  213 (691)
                      ++++|++++.++|++||++||+|+|++|+++||+++++++++++ ..|+.++.
T Consensus       196 ~~e~I~~it~~~l~~f~~~~Y~p~N~~l~v~G~i~~~~~~~~i~-k~f~~~~~  247 (257)
T d2fgea4         196 DPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLS-EYLDMFEA  247 (257)
T ss_dssp             CTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHH-HHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHH-HHHHCCCC
T ss_conf             15441044699999999984792458999995999999999999-98716899
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b1 d.185.1.1 (B:24-245) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q2la4 d.185.1.1 (A:24-263) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ppja1 d.185.1.1 (A:2-233) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a1 d.185.1.1 (A:14-233) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb1 d.185.1.1 (B:17-235) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a1 d.185.1.1 (A:27-239) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5b1 d.185.1.1 (B:17-218) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la1 d.185.1.1 (A:504-732) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hr6b2 d.185.1.1 (B:246-462) Mitochondrial processing peptidase (MPP) beta chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ppjb2 d.185.1.1 (B:236-439) Cytochrome bc1 core subunit 2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1ppja2 d.185.1.1 (A:234-442) Cytochrome bc1 core subunit 1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3cx5a2 d.185.1.1 (A:240-457) Cytochrome bc1 core subunit 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2fgea2 d.185.1.1 (A:798-993) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2fgea1 d.185.1.1 (A:540-797) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cx5b2 d.185.1.1 (B:219-368) Cytochrome bc1 core subunit 2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure