Citrus Sinensis ID: 005559

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-
MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRCCVFLFPY
ccccccccccEEcccEEEEEEEccccccccccccccEEEEcccccEEEEEEccccHHHHcccccccEEEEEccccccEEEEEcccccccEEEEEEccccEEEEEEEccEEEEEcccccccccccccccccccccEEEEEEEccEEEEEEEccEEEEEEcccccEEEEccccccccccccEEEEcccccccccEEEEEEEcccEEEEEccccEEEcccccEEEEEcccccEEEEEEEccEEEEEEccccccccccccccccccccEEEEcccEEEEEEccEEEEEEcccccEEEEEcccEEEEEcccccEEEccccEEEEEEccHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccc
cccccccccHHHcccEEEEEEEEEccccccccHHccEEEEccccccEEEEEccccEEEEcccccccEEEEEEccccEEEEEccccccccEEEEEEccccEEEEEEcccEEEEEEcccccccccccccccHHcccEEEEEEEccEEEEEEcccEEEEEEcccccccccccccccccccccEEEEcccccccccEEEEEEEccEEEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEcccccccccEEEEccccEEEEEEccEEEEEcccccEEEEEccccEEEEEccccEEEEccccEEEHEEccHHHHHHEccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHcccHHHHcHHHHcccHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcc
MANVSVAAEWQLVYNRyyrkpelyQMRWKHIdlsrnkvacapfggpiavirddsKIVQLYAESALRKLRIFNSAGVLisetvwknpggrligmswsedQTLICVVqdgtvyrynihaeliepnasmgkecfeENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELarpeveelphcvaviepkytmtGSVEVLIGTdagilmldedgvqkvddtlsqkmavspngnfvacfthdgrlvvnntnfsspvidescesalppeqiawcgmdSVLLYWNDMLVMvapqaepvqyfydeplvlipecdgvrilsnSSMEflqrvpasteQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLnaardpeigiplSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKitaslaipdVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEheprsskqvpLLLSIGEEDTALVKatesgdtdLVYLVIFHIWqkrpaleffgmiqtrplacDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWelgknpmasngsalhgpriKRIEKAHSLFSetkehtfesKAAEEHAKLLSVIQEANKRccvflfpy
MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGpiavirddsKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEheprsskqvplLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPmasngsalhgprIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRCCVFLFPY
MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKecfeenvvecvfWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTlleilldklklckGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRCCVFLFPY
****SVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDI************************IQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHA************************LLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELG*******************************************KLLSVIQEANKRCCVFLF**
****SVA*EWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITA****PDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWE*************HGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRCCVFLFPY
MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRCCVFLFPY
*****VAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNP**SNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRCCVFLFPY
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MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEVEELPHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHWACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRCCVFLFPY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query691 2.2.26 [Sep-21-2011]
Q55C58 832 Vacuolar protein sorting- yes no 0.946 0.786 0.366 1e-121
Q9H269 839 Vacuolar protein sorting- yes no 0.917 0.755 0.340 6e-96
Q5E9L7 839 Vacuolar protein sorting- yes no 0.914 0.753 0.342 1e-95
Q920Q4 839 Vacuolar protein sorting- yes no 0.916 0.754 0.340 4e-95
Q9UT38 835 Probable vacuolar protein yes no 0.937 0.776 0.296 1e-78
Q03308 798 Vacuolar protein sorting- yes no 0.597 0.517 0.262 1e-28
Q60V75 858 Vacuolar protein sorting- N/A no 0.769 0.620 0.230 2e-21
Q11182 852 Vacuolar protein sorting- yes no 0.729 0.591 0.235 4e-21
>sp|Q55C58|VPS16_DICDI Vacuolar protein sorting-associated protein 16 homolog OS=Dictyostelium discoideum GN=vps16 PE=3 SV=2 Back     alignment and function desciption
 Score =  435 bits (1118), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 251/684 (36%), Positives = 398/684 (58%), Gaps = 30/684 (4%)

Query: 6   VAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESAL 65
           +AA+W+++ N  Y K E+Y M W  +DL +     +PF GPIAV+RD SK V++ +++  
Sbjct: 2   IAAQWKIIGNSTYIKKEIYSMSW-DVDLKQQVSVGSPFAGPIAVMRDSSKFVEMNSQNMK 60

Query: 66  RKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNAS 125
             L+IF ++G LIS+ +W +    ++ M W E + L+ V+Q+ TV  +N+  E +    S
Sbjct: 61  PYLKIFTASGDLISQMIW-DSSKNIVAMDWIEKERLVIVLQNATVLIFNVFCEQM-TQFS 118

Query: 126 MGKECFEENVVECVFWGNGVVCVTEANRYFC---MADFATMKVCELARPEVEELPHCV-- 180
           +G    EE ++EC  W +G+V +T A++ +    + DF       +  P + E P     
Sbjct: 119 LGDIVREEEILECKIWSDGIVVLTSASQLYSVPSINDFFVESGRVIRLPPLPEEPKARPE 178

Query: 181 -AVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLS--QKMAVSPNGNFVACFTHD 237
            A++EP+++++ S+E+ +  +  + ++DED V+   +     QKM VSP G  +ACF   
Sbjct: 179 WAILEPQFSLSQSIEIFMSINGTLYLIDEDKVESQLEATEPIQKMVVSPCGKKLACFDTK 238

Query: 238 GRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDM----LVMVAPQAEPVQY 293
           G L++  T+ S+   D     A     + WCG D V++YW+ +    L   +      ++
Sbjct: 239 GTLLILKTDGSTTNPDRMDTKATKSPVLKWCGSDGVMMYWDSIKDPILFYFSKGDSWAKF 298

Query: 294 FYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSA 353
             D+P+ L+ E DG+RI+S+++ EF  +V   T  IF IG+TSPA++LYDA DHF  +S 
Sbjct: 299 TLDQPVSLVTEIDGLRIISDTTSEFFHKVSDVTIDIFKIGTTSPASILYDATDHFISKSP 358

Query: 354 KADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCK 413
           +ADE++R I   L  AV  CI AAG EF+   Q  LL+AAS+G+ F  N+   +   MC+
Sbjct: 359 QADESIRSINDQLEDAVNDCILAAGFEFNGGEQSKLLKAASFGKCFLENYNPSQFVTMCR 418

Query: 414 TLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMH 473
           +LRVLNA R  EIGIPLSI+QY  +    LI RLI+   HLLA RI +YL +  +VV+ H
Sbjct: 419 SLRVLNAVRHHEIGIPLSIKQYYHIGIEELIDRLISRRKHLLAWRICDYLKIKSDVVLNH 478

Query: 474 WACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSS 533
           WAC+K+     IPD  L +I++ KL+   GIS+A +A+ A  +GR KLA  L+E+EP+++
Sbjct: 479 WACTKVRTD--IPDQELGKIIIKKLESVPGISFANIASAAYLAGRSKLATKLLEYEPKAA 536

Query: 534 KQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTV 593
           +QVP L+ +GE   AL KA ESGDTDLVYLV+  + +  P  +F  +  ++ +A DL   
Sbjct: 537 EQVPPLIKMGESGLALNKAIESGDTDLVYLVLLAMQRSLPLADFLELTFSKVVALDLLIS 596

Query: 594 YARCYKHEF--LKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKA- 650
             +  K++F  L++ +    Q +E+  +  +E+       ++S+ S L   RIK   K+ 
Sbjct: 597 MCK-QKNDFPLLREIYHIKDQSKEMGNIYLQEA-------LSSHPSQLDQ-RIKAYNKSI 647

Query: 651 -HSLFSETKEHTFESKAAEEHAKL 673
            H   S+ K+    SK  ++  KL
Sbjct: 648 EHYHHSKDKDDQATSKFIDDQIKL 671
May play a role in vesicle-mediated protein trafficking to endosomal/lysosomal compartments and in membrane docking/fusion reactions.
Dictyostelium discoideum (taxid: 44689)
>sp|Q9H269|VPS16_HUMAN Vacuolar protein sorting-associated protein 16 homolog OS=Homo sapiens GN=VPS16 PE=1 SV=2 Back     alignment and function description
>sp|Q5E9L7|VPS16_BOVIN Vacuolar protein sorting-associated protein 16 homolog OS=Bos taurus GN=VPS16 PE=2 SV=1 Back     alignment and function description
>sp|Q920Q4|VPS16_MOUSE Vacuolar protein sorting-associated protein 16 homolog OS=Mus musculus GN=Vps16 PE=1 SV=3 Back     alignment and function description
>sp|Q9UT38|VPS16_SCHPO Probable vacuolar protein sorting-associated protein 16 homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps16 PE=3 SV=1 Back     alignment and function description
>sp|Q03308|VPS16_YEAST Vacuolar protein sorting-associated protein 16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS16 PE=1 SV=2 Back     alignment and function description
>sp|Q60V75|VPS16_CAEBR Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis briggsae GN=vps-16 PE=3 SV=1 Back     alignment and function description
>sp|Q11182|VPS16_CAEEL Vacuolar protein sorting-associated protein 16 homolog OS=Caenorhabditis elegans GN=vps-16 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
224082574 844 predicted protein [Populus trichocarpa] 0.981 0.803 0.802 0.0
225446811 838 PREDICTED: vacuolar protein sorting-asso 0.982 0.810 0.812 0.0
356567439 843 PREDICTED: vacuolar protein sorting-asso 0.982 0.805 0.782 0.0
356526977 843 PREDICTED: vacuolar protein sorting-asso 0.982 0.805 0.779 0.0
449453776 844 PREDICTED: vacuolar protein sorting-asso 0.978 0.800 0.788 0.0
357459003 856 Vacuolar protein sorting-associated prot 0.982 0.793 0.765 0.0
224066557 844 predicted protein [Populus trichocarpa] 0.981 0.803 0.779 0.0
18404619 858 vacuoleless1 (VCL1) [Arabidopsis thalian 0.992 0.799 0.754 0.0
255571398 851 vacuolar protein sorting vps16, putative 0.981 0.796 0.774 0.0
145330689 834 vacuoleless1 (VCL1) [Arabidopsis thalian 0.992 0.822 0.754 0.0
>gi|224082574|ref|XP_002306748.1| predicted protein [Populus trichocarpa] gi|222856197|gb|EEE93744.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score = 1161 bits (3004), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 550/685 (80%), Positives = 614/685 (89%), Gaps = 7/685 (1%)

Query: 1   MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLY 60
           MANVSVAAEWQL+ NRYYRKPELY MRWKHIDLSRNKVACAPFGGPIA+IRDDSKIVQLY
Sbjct: 1   MANVSVAAEWQLLINRYYRKPELYPMRWKHIDLSRNKVACAPFGGPIAIIRDDSKIVQLY 60

Query: 61  AESALRKLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELI 120
           AESALRKLRIFNSAG+L SETVWK+PGGRLIGMSW+EDQTLIC+VQDGT+YRYN+H E++
Sbjct: 61  AESALRKLRIFNSAGILFSETVWKHPGGRLIGMSWTEDQTLICIVQDGTIYRYNVHCEVL 120

Query: 121 EPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADFATMKVCELARPEV--EELPH 178
           EPN SMGKECFE+NVV+CVFWGNGVVC+TEA + FC+ DF  +K C+LA   +  EELPH
Sbjct: 121 EPNFSMGKECFEQNVVDCVFWGNGVVCLTEAGKLFCVPDFKQIKPCKLAEVGIGAEELPH 180

Query: 179 CVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDT----LSQKMAVSPNGNFVACF 234
           C+AVIEP+YT++G+VEVL+G  +GI+++DED V+ +D+     +  K+AVS NG F+ACF
Sbjct: 181 CMAVIEPQYTVSGNVEVLLGVGSGIVIVDEDEVRFIDEEKIGGVVLKIAVSHNGRFLACF 240

Query: 235 THDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYF 294
            HDGRLVV NT F        CESALPPEQ+AWCG+DSVLLYW+D+L+MV P  + V Y 
Sbjct: 241 MHDGRLVVMNTEFRD-FFQYQCESALPPEQMAWCGLDSVLLYWDDVLLMVGPSEDSVSYI 299

Query: 295 YDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAK 354
           YDEP++ IPECDGVRILSN+SMEF+QRVP ST  IF IGSTSPA+LL+DALDHFDRRSAK
Sbjct: 300 YDEPVIFIPECDGVRILSNTSMEFVQRVPDSTVSIFKIGSTSPASLLFDALDHFDRRSAK 359

Query: 355 ADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRDRIQEMCKT 414
           ADENLRLIRASLP+AVEACIDAAGHEFD+SRQR LLRAASYGQAFCSNFQRD IQEMCKT
Sbjct: 360 ADENLRLIRASLPEAVEACIDAAGHEFDVSRQRMLLRAASYGQAFCSNFQRDHIQEMCKT 419

Query: 415 LRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQEVVIMHW 474
           LRVLNA RDPEIGIPLSI+QYK L+A +LIGRLINA+ HLLALRISEY+GMNQEVVIMHW
Sbjct: 420 LRVLNAVRDPEIGIPLSIEQYKLLSAPILIGRLINAHQHLLALRISEYVGMNQEVVIMHW 479

Query: 475 ACSKITASLAIPDVTLLEILLDKLKLCKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSK 534
           +C+KITASLAIPD  LLEILLDKLKLCKGISYAAVAAHAD+SGRRKLAAMLV+HEPRSSK
Sbjct: 480 SCTKITASLAIPDAALLEILLDKLKLCKGISYAAVAAHADRSGRRKLAAMLVDHEPRSSK 539

Query: 535 QVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVY 594
           QVPLLLSI EEDTAL+KATESGDTDLVYLV+FHIWQKRPALEFFG IQ+RPLA DLF  Y
Sbjct: 540 QVPLLLSIAEEDTALMKATESGDTDLVYLVLFHIWQKRPALEFFGTIQSRPLARDLFIAY 599

Query: 595 ARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSALHGPRIKRIEKAHSLF 654
           ARCYKHEFLKDFFLSTGQLQ+VAFLLWK+SWELGKNPM S GS LHGPRIK IEKAH+LF
Sbjct: 600 ARCYKHEFLKDFFLSTGQLQDVAFLLWKDSWELGKNPMGSKGSPLHGPRIKLIEKAHNLF 659

Query: 655 SETKEHTFESKAAEEHAKLLSVIQE 679
           SETKEHTFESKAAEEHAKLL +  E
Sbjct: 660 SETKEHTFESKAAEEHAKLLRIQHE 684

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225446811|ref|XP_002283428.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Vitis vinifera] gi|302143532|emb|CBI22093.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356567439|ref|XP_003551927.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Glycine max] Back     alignment and taxonomy information
>gi|356526977|ref|XP_003532091.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Glycine max] Back     alignment and taxonomy information
>gi|449453776|ref|XP_004144632.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Cucumis sativus] gi|449519144|ref|XP_004166595.1| PREDICTED: vacuolar protein sorting-associated protein 16 homolog [Cucumis sativus] Back     alignment and taxonomy information
>gi|357459003|ref|XP_003599782.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] gi|355488830|gb|AES70033.1| Vacuolar protein sorting-associated protein-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|224066557|ref|XP_002302135.1| predicted protein [Populus trichocarpa] gi|222843861|gb|EEE81408.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|18404619|ref|NP_565879.1| vacuoleless1 (VCL1) [Arabidopsis thaliana] gi|13877133|gb|AAK43713.1|AF359240_1 VCL1 [Arabidopsis thaliana] gi|15081711|gb|AAK82510.1| At2g38020/T8P21.7 [Arabidopsis thaliana] gi|22655028|gb|AAM98105.1| At2g38020/T8P21.7 [Arabidopsis thaliana] gi|330254385|gb|AEC09479.1| vacuoleless1 (VCL1) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|255571398|ref|XP_002526647.1| vacuolar protein sorting vps16, putative [Ricinus communis] gi|223534014|gb|EEF35735.1| vacuolar protein sorting vps16, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|145330689|ref|NP_001078020.1| vacuoleless1 (VCL1) [Arabidopsis thaliana] gi|330254386|gb|AEC09480.1| vacuoleless1 (VCL1) [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query691
TAIR|locus:2065674 858 VCL1 "AT2G38020" [Arabidopsis 0.678 0.546 0.770 6.6e-274
DICTYBASE|DDB_G0270754 832 vps16 "Vacuolar protein sortin 0.946 0.786 0.356 1.4e-105
UNIPROTKB|G4N5E9 829 MGG_05256 "Vacuolar protein so 0.960 0.800 0.358 1.4e-103
ASPGD|ASPL0000006985 829 vps16 [Emericella nidulans (ta 0.868 0.723 0.373 2.6e-102
UNIPROTKB|F1MQ47 839 VPS16 "Vacuolar protein sortin 0.934 0.769 0.340 1.5e-92
UNIPROTKB|Q9H269 839 VPS16 "Vacuolar protein sortin 0.936 0.771 0.339 1.5e-92
UNIPROTKB|Q5E9L7 839 VPS16 "Vacuolar protein sortin 0.934 0.769 0.340 3e-92
ZFIN|ZDB-GENE-050809-9 835 zgc:162584 "zgc:162584" [Danio 0.934 0.773 0.340 2.7e-91
UNIPROTKB|E2QZL5 839 VPS16 "Uncharacterized protein 0.936 0.771 0.335 5.7e-91
MGI|MGI:2136772 839 Vps16 "vacuolar protein sortin 0.939 0.773 0.337 9.3e-91
TAIR|locus:2065674 VCL1 "AT2G38020" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1874 (664.7 bits), Expect = 6.6e-274, Sum P(2) = 6.6e-274
 Identities = 363/471 (77%), Positives = 400/471 (84%)

Query:   220 QKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWND 279
             QKM VSPNG F+  FTHDGR+VV +       ID SCESALPP+Q+AWCGMDSVLLYW++
Sbjct:   244 QKMIVSPNGKFLTLFTHDGRIVVVDMETKQIAIDYSCESALPPQQMAWCGMDSVLLYWDE 303

Query:   280 MLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAA 339
              L+MV P  +PV YFYDEP++LIPECDGVRILSN+++EFLQRVP STE IF IGSTSPAA
Sbjct:   304 DLMMVGPVGDPVHYFYDEPIILIPECDGVRILSNTNLEFLQRVPDSTESIFKIGSTSPAA 363

Query:   340 LLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAF 399
             LLYDALDHFDRRSAKADENLRLIR+SL +AVE+CIDAAGHEFD++RQR LLRAASYGQAF
Sbjct:   364 LLYDALDHFDRRSAKADENLRLIRSSLSEAVESCIDAAGHEFDVTRQRALLRAASYGQAF 423

Query:   400 CSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRI 459
             CSNFQR+R+QE C+TLRVLNA RDP IGIPLSIQQYK LT  VLI RLINANCHLLALRI
Sbjct:   424 CSNFQRERVQETCRTLRVLNAVRDPAIGIPLSIQQYKLLTPVVLISRLINANCHLLALRI 483

Query:   460 SEYLGMNQEVVIMHWACSKITASLAIPDVTXXXXXXXXXXXXXGISYAAVAAHADKSGRR 519
             SEYL MN+EVVIMHWAC+KITAS + PD               GISYAAVA HAD  GRR
Sbjct:   484 SEYLDMNKEVVIMHWACAKITASPSTPDSHLLEILLDKLQLCKGISYAAVATHADNCGRR 543

Query:   520 KLAAMLVEHEPRSSKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPALEFFG 579
             KLAAMLVEHEPRS+KQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRP LEFF 
Sbjct:   544 KLAAMLVEHEPRSTKQVPLLLSIGEEDTALVKATESGDTDLVYLVIFHIWQKRPPLEFFA 603

Query:   580 MIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKNPMASNGSAL 639
             MIQ R LA DLF  YARC+KHEFLKDFFLSTGQ+ EVAFLLWKESW++GKNPMAS GS L
Sbjct:   604 MIQGRVLARDLFVAYARCHKHEFLKDFFLSTGQIHEVAFLLWKESWDMGKNPMASKGSPL 663

Query:   640 HGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQE--ANKRCCVFL 688
             HGPRIK IEKA +LFS+TKEHTFESKAAEEHAKLL +  E  A+ +  +F+
Sbjct:   664 HGPRIKLIEKARNLFSQTKEHTFESKAAEEHAKLLKIQHELEASTKQAIFV 714
GO:0003674 "molecular_function" evidence=ND
GO:0005622 "intracellular" evidence=IEA
GO:0006886 "intracellular protein transport" evidence=IEA
GO:0007033 "vacuole organization" evidence=RCA;TAS
GO:0009705 "plant-type vacuole membrane" evidence=IDA
GO:0006486 "protein glycosylation" evidence=RCA
GO:0006487 "protein N-linked glycosylation" evidence=RCA
GO:0006623 "protein targeting to vacuole" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010413 "glucuronoxylan metabolic process" evidence=RCA
GO:0016926 "protein desumoylation" evidence=RCA
GO:0045492 "xylan biosynthetic process" evidence=RCA
GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0270754 vps16 "Vacuolar protein sorting-associated protein 16 homolog" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|G4N5E9 MGG_05256 "Vacuolar protein sorting-associated protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
ASPGD|ASPL0000006985 vps16 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQ47 VPS16 "Vacuolar protein sorting-associated protein 16 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H269 VPS16 "Vacuolar protein sorting-associated protein 16 homolog" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E9L7 VPS16 "Vacuolar protein sorting-associated protein 16 homolog" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050809-9 zgc:162584 "zgc:162584" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2QZL5 VPS16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2136772 Vps16 "vacuolar protein sorting 16 (yeast)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
pfam04841408 pfam04841, Vps16_N, Vps16, N-terminal region 7e-80
pfam04840 319 pfam04840, Vps16_C, Vps16, C-terminal region 7e-20
>gnl|CDD|218287 pfam04841, Vps16_N, Vps16, N-terminal region Back     alignment and domain information 
 Score =  259 bits (664), Expect = 7e-80
 Identities = 132/410 (32%), Positives = 209/410 (50%), Gaps = 19/410 (4%)

Query: 8   AEWQLVYNRYYRKPELYQMRWKHI-DLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALR 66
            EW+L+ + YYRK  L  + W    ++     A AP+GGPIAV R    +    A     
Sbjct: 3   FEWELLKDVYYRKRALGTLDWPLKYEVFDCAFAAAPYGGPIAVTRSPFNLRP--AYDQRP 60

Query: 67  KLRIFNSAGVLISETVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASM 126
            ++I+N +G L+ + +W +    L+ M WS+D+ LI V + G V  Y +  E      S+
Sbjct: 61  MIQIYNYSGQLLGKILWNH--EPLVKMGWSKDEELIVVQKSGIVIVYGLLGE--FHQFSI 116

Query: 127 GKECFEENVVECV-----FWGNGVVCVTEANRYFCMADFATMKVCELARPEVEEL----- 176
           G E     V EC      F  +GV  +T++ R + +       +    +PE+  L     
Sbjct: 117 GLEIESVPVQECRIFTTSFGHSGVAVLTKSGRVYLLNGVEE-PLLWRNKPEIPNLLTKNH 175

Query: 177 PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQKVDDTLSQKMAVSPNGNFVACFTH 236
             C         +    ++ +     + ++ E   Q  +     K++VS N   +A +T 
Sbjct: 176 WSCSDTSIILLLVDHVYQISLSVGELLKLITEQSSQHANTKWH-KISVSDNRRHLALYTM 234

Query: 237 DGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYD 296
            G++   + + S  + + + +    P+Q+ WCG D+V++ +  +L +V P  + VQ++YD
Sbjct: 235 TGKIWQISRDLSRKLCEFNLDDHDTPKQMCWCGNDAVVVSFESLLKLVGPDGDSVQFWYD 294

Query: 297 EPLVLIPECDGVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKAD 356
               L  E DGVRI++ SS EFL RVPA++E IFAIGST P A+L +A    +  S KAD
Sbjct: 295 FTTNLSAEVDGVRIITTSSHEFLSRVPAASENIFAIGSTEPGAMLVEAFQEMEDHSPKAD 354

Query: 357 ENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASYGQAFCSNFQRD 406
           E L+ I+  L KAV+ CI+AA  EF    Q++LLRAAS+G+A   N   D
Sbjct: 355 EYLKEIQDVLEKAVDDCIEAAIDEFQPELQKSLLRAASFGKASLRNKNPD 404

This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport. The role of VPS16 in this complex is not known. Length = 408
>gnl|CDD|218286 pfam04840, Vps16_C, Vps16, C-terminal region Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 691
KOG2280 829 consensus Vacuolar assembly/sorting protein VPS16 100.0
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 100.0
PF04840 319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 100.0
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.84
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 99.75
KOG0315311 consensus G-protein beta subunit-like protein (con 99.68
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.66
KOG0263707 consensus Transcription initiation factor TFIID, s 99.65
KOG0645312 consensus WD40 repeat protein [General function pr 99.62
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.61
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.6
KOG0272459 consensus U4/U6 small nuclear ribonucleoprotein Pr 99.59
KOG0266456 consensus WD40 repeat-containing protein [General 99.58
KOG0271480 consensus Notchless-like WD40 repeat-containing pr 99.57
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.56
KOG0291893 consensus WD40-repeat-containing subunit of the 18 99.51
cd00200289 WD40 WD40 domain, found in a number of eukaryotic 99.5
PLN00181793 protein SPA1-RELATED; Provisional 99.49
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.49
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.49
KOG0266456 consensus WD40 repeat-containing protein [General 99.48
KOG0284464 consensus Polyadenylation factor I complex, subuni 99.46
KOG0279315 consensus G protein beta subunit-like protein [Sig 99.46
KOG0265338 consensus U5 snRNP-specific protein-like factor an 99.46
KOG0286343 consensus G-protein beta subunit [General function 99.46
KOG0640430 consensus mRNA cleavage stimulating factor complex 99.44
KOG0273524 consensus Beta-transducin family (WD-40 repeat) pr 99.44
KOG0293519 consensus WD40 repeat-containing protein [Function 99.41
KOG0318603 consensus WD40 repeat stress protein/actin interac 99.41
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.35
KOG0286343 consensus G-protein beta subunit [General function 99.34
KOG0315311 consensus G-protein beta subunit-like protein (con 99.34
KOG0263707 consensus Transcription initiation factor TFIID, s 99.32
KOG0973 942 consensus Histone transcription regulator HIRA, WD 99.31
PTZ00421493 coronin; Provisional 99.31
PTZ00421493 coronin; Provisional 99.31
KOG0275508 consensus Conserved WD40 repeat-containing protein 99.3
KOG0319775 consensus WD40-repeat-containing subunit of the 18 99.3
PLN00181793 protein SPA1-RELATED; Provisional 99.28
KOG0288459 consensus WD40 repeat protein TipD [General functi 99.26
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.24
PTZ00420568 coronin; Provisional 99.22
KOG0278334 consensus Serine/threonine kinase receptor-associa 99.2
PTZ00420568 coronin; Provisional 99.19
KOG0301745 consensus Phospholipase A2-activating protein (con 99.19
KOG1407313 consensus WD40 repeat protein [Function unknown] 99.17
KOG0295406 consensus WD40 repeat-containing protein [Function 99.17
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 99.17
KOG0295406 consensus WD40 repeat-containing protein [Function 99.17
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.16
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 99.16
KOG0645312 consensus WD40 repeat protein [General function pr 99.16
KOG0296399 consensus Angio-associated migratory cell protein 99.15
KOG0281499 consensus Beta-TrCP (transducin repeats containing 99.15
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.15
KOG0282503 consensus mRNA splicing factor [Function unknown] 99.14
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 99.13
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 99.12
KOG2055514 consensus WD40 repeat protein [General function pr 99.12
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 99.11
KOG0313423 consensus Microtubule binding protein YTM1 (contai 99.11
KOG0299479 consensus U3 snoRNP-associated protein (contains W 99.11
KOG0643327 consensus Translation initiation factor 3, subunit 99.08
KOG0316307 consensus Conserved WD40 repeat-containing protein 99.08
KOG0647347 consensus mRNA export protein (contains WD40 repea 99.07
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 99.06
KOG0293519 consensus WD40 repeat-containing protein [Function 99.06
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.05
KOG2096420 consensus WD40 repeat protein [General function pr 99.05
KOG1274 933 consensus WD40 repeat protein [General function pr 99.04
KOG1446311 consensus Histone H3 (Lys4) methyltransferase comp 99.03
KOG0310487 consensus Conserved WD40 repeat-containing protein 99.03
KOG0276794 consensus Vesicle coat complex COPI, beta' subunit 99.02
KOG0294362 consensus WD40 repeat-containing protein [Function 99.01
KOG0306888 consensus WD40-repeat-containing subunit of the 18 99.01
KOG0772641 consensus Uncharacterized conserved protein, conta 99.0
KOG0973 942 consensus Histone transcription regulator HIRA, WD 98.99
KOG0282503 consensus mRNA splicing factor [Function unknown] 98.98
KOG0289506 consensus mRNA splicing factor [General function p 98.98
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 98.98
KOG0275508 consensus Conserved WD40 repeat-containing protein 98.98
KOG0288459 consensus WD40 repeat protein TipD [General functi 98.97
KOG1539910 consensus WD repeat protein [General function pred 98.97
KOG0301745 consensus Phospholipase A2-activating protein (con 98.97
KOG0284464 consensus Polyadenylation factor I complex, subuni 98.95
KOG2055514 consensus WD40 repeat protein [General function pr 98.95
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 98.94
KOG0278334 consensus Serine/threonine kinase receptor-associa 98.93
KOG0265338 consensus U5 snRNP-specific protein-like factor an 98.92
KOG0268433 consensus Sof1-like rRNA processing protein (conta 98.92
KOG0771398 consensus Prolactin regulatory element-binding pro 98.92
KOG0641350 consensus WD40 repeat protein [General function pr 98.91
KOG0292 1202 consensus Vesicle coat complex COPI, alpha subunit 98.9
TIGR03866300 PQQ_ABC_repeats PQQ-dependent catabolism-associate 98.9
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 98.89
KOG1273405 consensus WD40 repeat protein [General function pr 98.87
KOG0289506 consensus mRNA splicing factor [General function p 98.87
KOG2048691 consensus WD40 repeat protein [General function pr 98.87
KOG0269839 consensus WD40 repeat-containing protein [Function 98.86
KOG0283712 consensus WD40 repeat-containing protein [Function 98.85
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 98.85
KOG0772641 consensus Uncharacterized conserved protein, conta 98.84
KOG1274 933 consensus WD40 repeat protein [General function pr 98.83
KOG2096420 consensus WD40 repeat protein [General function pr 98.83
KOG0268433 consensus Sof1-like rRNA processing protein (conta 98.83
KOG0296399 consensus Angio-associated migratory cell protein 98.81
PRK01742429 tolB translocation protein TolB; Provisional 98.81
KOG0283712 consensus WD40 repeat-containing protein [Function 98.8
KOG0285460 consensus Pleiotropic regulator 1 [RNA processing 98.77
PRK03629429 tolB translocation protein TolB; Provisional 98.76
PRK05137435 tolB translocation protein TolB; Provisional 98.76
KOG0646476 consensus WD40 repeat protein [General function pr 98.76
PRK02889427 tolB translocation protein TolB; Provisional 98.74
KOG1332299 consensus Vesicle coat complex COPII, subunit SEC1 98.73
PRK01742429 tolB translocation protein TolB; Provisional 98.73
KOG0270463 consensus WD40 repeat-containing protein [Function 98.71
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 98.71
PRK04922433 tolB translocation protein TolB; Provisional 98.71
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 98.71
PRK05137435 tolB translocation protein TolB; Provisional 98.69
KOG0646476 consensus WD40 repeat protein [General function pr 98.69
KOG0281499 consensus Beta-TrCP (transducin repeats containing 98.68
KOG2106626 consensus Uncharacterized conserved protein, conta 98.67
KOG0643327 consensus Translation initiation factor 3, subunit 98.65
PRK03629429 tolB translocation protein TolB; Provisional 98.63
KOG0277311 consensus Peroxisomal targeting signal type 2 rece 98.62
PRK04922433 tolB translocation protein TolB; Provisional 98.61
KOG1407313 consensus WD40 repeat protein [Function unknown] 98.61
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 98.59
KOG2111346 consensus Uncharacterized conserved protein, conta 98.58
KOG0264422 consensus Nucleosome remodeling factor, subunit CA 98.57
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.55
KOG1036323 consensus Mitotic spindle checkpoint protein BUB3, 98.55
KOG1539910 consensus WD repeat protein [General function pred 98.52
PRK02889427 tolB translocation protein TolB; Provisional 98.52
PRK04792448 tolB translocation protein TolB; Provisional 98.52
KOG1063764 consensus RNA polymerase II elongator complex, sub 98.52
KOG0313423 consensus Microtubule binding protein YTM1 (contai 98.52
KOG0305484 consensus Anaphase promoting complex, Cdc20, Cdh1, 98.51
KOG0308735 consensus Conserved WD40 repeat-containing protein 98.49
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 98.48
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 98.47
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.47
KOG0300481 consensus WD40 repeat-containing protein [Function 98.46
PRK00178430 tolB translocation protein TolB; Provisional 98.45
KOG0640430 consensus mRNA cleavage stimulating factor complex 98.45
PRK04043419 tolB translocation protein TolB; Provisional 98.45
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 98.43
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 98.42
KOG2110391 consensus Uncharacterized conserved protein, conta 98.42
KOG14451012 consensus Tumor-specific antigen (contains WD repe 98.4
PRK11028330 6-phosphogluconolactonase; Provisional 98.4
KOG2048691 consensus WD40 repeat protein [General function pr 98.39
KOG4328498 consensus WD40 protein [Function unknown] 98.39
TIGR02800417 propeller_TolB tol-pal system beta propeller repea 98.37
KOG2110391 consensus Uncharacterized conserved protein, conta 98.37
KOG0267 825 consensus Microtubule severing protein katanin p80 98.37
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 98.36
PF08662194 eIF2A: Eukaryotic translation initiation factor eI 98.35
COG2319466 FOG: WD40 repeat [General function prediction only 98.34
KOG12401431 consensus Protein kinase containing WD40 repeats [ 98.34
KOG1272545 consensus WD40-repeat-containing subunit of the 18 98.33
KOG0639705 consensus Transducin-like enhancer of split protei 98.31
KOG0300481 consensus WD40 repeat-containing protein [Function 98.28
PRK01029428 tolB translocation protein TolB; Provisional 98.28
KOG0303472 consensus Actin-binding protein Coronin, contains 98.27
KOG0771398 consensus Prolactin regulatory element-binding pro 98.24
KOG2106626 consensus Uncharacterized conserved protein, conta 98.23
KOG4497447 consensus Uncharacterized conserved protein WDR8, 98.23
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 98.22
PRK11028330 6-phosphogluconolactonase; Provisional 98.21
PRK04792448 tolB translocation protein TolB; Provisional 98.21
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 98.21
PRK00178430 tolB translocation protein TolB; Provisional 98.2
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 98.2
KOG0647347 consensus mRNA export protein (contains WD40 repea 98.16
KOG0641350 consensus WD40 repeat protein [General function pr 98.14
KOG1524737 consensus WD40 repeat-containing protein CHE-2 [Ge 98.13
KOG2139445 consensus WD40 repeat protein [General function pr 98.12
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 98.12
KOG2445361 consensus Nuclear pore complex component (sc Seh1) 98.12
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 98.08
KOG0269 839 consensus WD40 repeat-containing protein [Function 98.08
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 98.06
KOG0290364 consensus Conserved WD40 repeat-containing protein 98.05
KOG14451012 consensus Tumor-specific antigen (contains WD repe 98.04
KOG1188376 consensus WD40 repeat protein [General function pr 98.02
KOG0299479 consensus U3 snoRNP-associated protein (contains W 98.01
KOG14081080 consensus WD40 repeat protein [Function unknown] 98.0
KOG1963792 consensus WD40 repeat protein [General function pr 98.0
KOG0308735 consensus Conserved WD40 repeat-containing protein 97.99
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 97.98
KOG0307 1049 consensus Vesicle coat complex COPII, subunit SEC3 97.98
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 97.96
KOG0302440 consensus Ribosome Assembly protein [General funct 97.95
KOG4378673 consensus Nuclear protein COP1 [Signal transductio 97.95
KOG0294362 consensus WD40 repeat-containing protein [Function 97.95
KOG0270463 consensus WD40 repeat-containing protein [Function 97.94
COG2319466 FOG: WD40 repeat [General function prediction only 97.93
KOG0639705 consensus Transducin-like enhancer of split protei 97.92
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 97.92
PRK04043419 tolB translocation protein TolB; Provisional 97.9
KOG1063764 consensus RNA polymerase II elongator complex, sub 97.86
KOG0302440 consensus Ribosome Assembly protein [General funct 97.83
KOG2919406 consensus Guanine nucleotide-binding protein [Gene 97.82
PRK01029428 tolB translocation protein TolB; Provisional 97.81
KOG1963792 consensus WD40 repeat protein [General function pr 97.81
KOG0267 825 consensus Microtubule severing protein katanin p80 97.8
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 97.76
KOG1009434 consensus Chromatin assembly complex 1 subunit B/C 97.72
PF04762928 IKI3: IKI3 family; InterPro: IPR006849 Members of 97.72
KOG2321703 consensus WD40 repeat protein [General function pr 97.72
KOG0649325 consensus WD40 repeat protein [General function pr 97.71
KOG2139445 consensus WD40 repeat protein [General function pr 97.7
PF04762 928 IKI3: IKI3 family; InterPro: IPR006849 Members of 97.7
KOG2315566 consensus Predicted translation initiation factor 97.68
KOG12401431 consensus Protein kinase containing WD40 repeats [ 97.67
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 97.64
PF04840319 Vps16_C: Vps16, C-terminal region; InterPro: IPR00 97.63
KOG2111346 consensus Uncharacterized conserved protein, conta 97.6
KOG15171387 consensus Guanine nucleotide binding protein MIP1 97.59
KOG4283397 consensus Transcription-coupled repair protein CSA 97.59
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 97.57
KOG4283397 consensus Transcription-coupled repair protein CSA 97.53
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 97.49
KOG4328498 consensus WD40 protein [Function unknown] 97.42
COG4946668 Uncharacterized protein related to the periplasmic 97.38
KOG4497447 consensus Uncharacterized conserved protein WDR8, 97.35
PLN029191057 haloacid dehalogenase-like hydrolase family protei 97.31
KOG1273405 consensus WD40 repeat protein [General function pr 97.31
KOG0321720 consensus WD40 repeat-containing protein L2DTL [Fu 97.27
KOG1272545 consensus WD40-repeat-containing subunit of the 18 97.26
PLN029191057 haloacid dehalogenase-like hydrolase family protei 97.18
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 97.18
KOG0644 1113 consensus Uncharacterized conserved protein, conta 97.17
KOG1034385 consensus Transcriptional repressor EED/ESC/FIE, r 97.17
KOG0303472 consensus Actin-binding protein Coronin, contains 97.16
KOG2041 1189 consensus WD40 repeat protein [General function pr 97.14
KOG0642577 consensus Cell-cycle nuclear protein, contains WD- 97.13
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 97.06
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 97.02
KOG0649325 consensus WD40 repeat protein [General function pr 97.01
COG4946668 Uncharacterized protein related to the periplasmic 96.97
PF02239369 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO 96.93
PF10282345 Lactonase: Lactonase, 7-bladed beta-propeller; Int 96.91
KOG2321703 consensus WD40 repeat protein [General function pr 96.88
KOG14081080 consensus WD40 repeat protein [Function unknown] 96.87
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 96.87
COG2706346 3-carboxymuconate cyclase [Carbohydrate transport 96.85
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 96.81
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 96.79
TIGR02658352 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. 96.74
KOG2394636 consensus WD40 protein DMR-N9 [General function pr 96.73
KOG1188376 consensus WD40 repeat protein [General function pr 96.72
KOG1523361 consensus Actin-related protein Arp2/3 complex, su 96.71
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.68
KOG0322323 consensus G-protein beta subunit-like protein GNB1 96.68
KOG0290364 consensus Conserved WD40 repeat-containing protein 96.67
KOG0322323 consensus G-protein beta subunit-like protein GNB1 96.64
KOG1007370 consensus WD repeat protein TSSC1, WD repeat super 96.63
KOG1587555 consensus Cytoplasmic dynein intermediate chain [C 96.61
PF0040039 WD40: WD domain, G-beta repeat; InterPro: IPR01978 96.57
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 96.54
KOG2315566 consensus Predicted translation initiation factor 96.52
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 96.44
KOG4227609 consensus WD40 repeat protein [General function pr 96.43
COG5354561 Uncharacterized protein, contains Trp-Asp (WD) rep 96.29
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 96.28
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 96.22
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 96.21
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 96.16
KOG0650733 consensus WD40 repeat nucleolar protein Bop1, invo 96.15
KOG41901034 consensus Uncharacterized conserved protein [Funct 96.14
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 96.14
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 96.06
KOG0974 967 consensus WD-repeat protein WDR6, WD repeat superf 96.04
KOG15171387 consensus Guanine nucleotide binding protein MIP1 96.03
KOG1310758 consensus WD40 repeat protein [General function pr 95.95
KOG2114 933 consensus Vacuolar assembly/sorting protein PEP5/V 95.84
KOG3881412 consensus Uncharacterized conserved protein [Funct 95.78
PF08450246 SGL: SMP-30/Gluconolaconase/LRE-like region; Inter 95.71
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 95.64
KOG4227609 consensus WD40 repeat protein [General function pr 95.58
COG0823425 TolB Periplasmic component of the Tol biopolymer t 95.51
TIGR03300377 assembly_YfgL outer membrane assembly lipoprotein 95.37
PF06977248 SdiA-regulated: SdiA-regulated; InterPro: IPR00972 95.05
KOG4532344 consensus WD40-like repeat containing protein [Gen 94.86
smart0032040 WD40 WD40 repeats. Note that these repeats are per 94.81
PF13360238 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 94.8
KOG4640665 consensus Anaphase-promoting complex (APC), subuni 94.64
COG0823425 TolB Periplasmic component of the Tol biopolymer t 94.57
KOG4532344 consensus WD40-like repeat containing protein [Gen 94.43
PF09787 511 Golgin_A5: Golgin subfamily A member 5; InterPro: 94.26
KOG3881412 consensus Uncharacterized conserved protein [Funct 94.18
PF15492282 Nbas_N: Neuroblastoma-amplified sequence, N termin 94.15
PRK13616591 lipoprotein LpqB; Provisional 94.06
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 93.97
KOG2079 1206 consensus Vacuolar assembly/sorting protein VPS8 [ 93.89
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 93.77
KOG1920 1265 consensus IkappaB kinase complex, IKAP component [ 93.54
KOG0280339 consensus Uncharacterized conserved protein [Amino 92.69
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 92.48
KOG19121062 consensus WD40 repeat protein [General function pr 92.4
PF08553794 VID27: VID27 cytoplasmic protein; InterPro: IPR013 92.39
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 92.13
KOG4547541 consensus WD40 repeat-containing protein [General 92.09
KOG3621726 consensus WD40 repeat-containing protein [General 91.9
KOG2066 846 consensus Vacuolar assembly/sorting protein VPS41 91.88
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 91.84
PF1289447 Apc4_WD40: Anaphase-promoting complex subunit 4 WD 91.68
PF14727418 PHTB1_N: PTHB1 N-terminus 91.55
KOG0882558 consensus Cyclophilin-related peptidyl-prolyl cis- 91.45
KOG1275 1118 consensus PAB-dependent poly(A) ribonuclease, subu 91.24
TIGR02604367 Piru_Ver_Nterm putative membrane-bound dehydrogena 90.83
KOG2280829 consensus Vacuolar assembly/sorting protein VPS16 90.76
PF07202179 Tcp10_C: T-complex protein 10 C-terminus; InterPro 90.68
KOG2314698 consensus Translation initiation factor 3, subunit 90.66
PF03178321 CPSF_A: CPSF A subunit region; InterPro: IPR004871 90.39
PRK13616591 lipoprotein LpqB; Provisional 90.36
KOG2314698 consensus Translation initiation factor 3, subunit 90.34
smart0032040 WD40 WD40 repeats. Note that these repeats are per 90.14
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 90.1
KOG3914390 consensus WD repeat protein WDR4 [Function unknown 89.92
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 89.15
COG3391381 Uncharacterized conserved protein [Function unknow 88.95
PRK11138394 outer membrane biogenesis protein BamB; Provisiona 88.77
PF11768545 DUF3312: Protein of unknown function (DUF3312); In 88.71
KOG0280339 consensus Uncharacterized conserved protein [Amino 88.45
PRK02888635 nitrous-oxide reductase; Validated 87.73
PF04841410 Vps16_N: Vps16, N-terminal region; InterPro: IPR00 87.61
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 87.45
PF10647253 Gmad1: Lipoprotein LpqB beta-propeller domain; Int 87.35
PF00780275 CNH: CNH domain; InterPro: IPR001180 Based on sequ 87.18
KOG0644 1113 consensus Uncharacterized conserved protein, conta 86.95
KOG1310 758 consensus WD40 repeat protein [General function pr 86.63
KOG1354433 consensus Serine/threonine protein phosphatase 2A, 85.83
PF14655415 RAB3GAP2_N: Rab3 GTPase-activating protein regulat 85.68
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 85.58
PF14783111 BBS2_Mid: Ciliary BBSome complex subunit 2, middle 85.24
PF07433305 DUF1513: Protein of unknown function (DUF1513); In 84.97
PLN00033398 photosystem II stability/assembly factor; Provisio 84.94
smart00299140 CLH Clathrin heavy chain repeat homology. 84.56
PF11635753 Med16: Mediator complex subunit 16; InterPro: IPR0 84.48
COG5170460 CDC55 Serine/threonine protein phosphatase 2A, reg 84.33
KOG4547541 consensus WD40 repeat-containing protein [General 84.07
KOG1334559 consensus WD40 repeat protein [General function pr 83.97
KOG1912 1062 consensus WD40 repeat protein [General function pr 83.89
PF14870302 PSII_BNR: Photosynthesis system II assembly factor 83.34
PF07995331 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: 82.89
KOG1645463 consensus RING-finger-containing E3 ubiquitin liga 82.89
TIGR01063800 gyrA DNA gyrase, A subunit. This model describes t 82.75
PF10395670 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an 82.61
PF12234631 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 82.21
KOG2395644 consensus Protein involved in vacuole import and d 81.67
KOG1409404 consensus Uncharacterized conserved protein, conta 81.39
KOG41901034 consensus Uncharacterized conserved protein [Funct 80.85
PF05935477 Arylsulfotrans: Arylsulfotransferase (ASST); Inter 80.8
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information 
Probab=100.00  E-value=5.9e-158  Score=1284.59  Aligned_cols=671  Identities=40%  Similarity=0.664  Sum_probs=635.4

Q ss_pred             CCCCcccccccccccEEEecccccccCCCCcCCCCCEEEEcCCCCeEEEEecCchhhhhhcccCCCeEEEEcCCCceeEE
Q 005559            1 MANVSVAAEWQLVYNRYYRKPELYQMRWKHIDLSRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSAGVLISE   80 (691)
Q Consensus         1 ~~~~~~~~~W~~l~~~~yr~~~~y~~~w~~~~l~~~~vA~sp~GG~IA~~~~~~k~~~~~~~~~~~~I~Iys~sG~ll~s   80 (691)
                      |++.+|+++|++|+|+||||.++|.|.|.-+|+....+++||+|||||++|+|+|++++.  +..+.|+||+.+|+++++
T Consensus         1 ~a~~~p~~eWell~d~fYrk~eiy~~~W~l~dl~~~~fa~Ap~gGpIAV~r~p~~~~~~~--~a~~~I~If~~sG~lL~~   78 (829)
T KOG2280|consen    1 MAMKYPTAEWELLLDVFYRKQEIYFMKWPLTDLYYVYFACAPFGGPIAVTRSPSKLVPLY--SARPYIRIFNISGQLLGR   78 (829)
T ss_pred             CCCcCcccchhhhHhhhhhhhhhcccCCcccccceeEEEecccCCceEEEeccccccccc--ccceeEEEEeccccchHH
Confidence            788999999999999999999999999966899999999999999999999999999865  478999999999999999


Q ss_pred             EEecCCCCCEEEEEecCCCeEEEEEeCCeEEEEeCCCCeeccccCCCccccccCeEEEEEeCCceEEEecCCeEEEEecC
Q 005559           81 TVWKNPGGRLIGMSWSEDQTLICVVQDGTVYRYNIHAELIEPNASMGKECFEENVVECVFWGNGVVCVTEANRYFCMADF  160 (691)
Q Consensus        81 i~~~~~~~~Iv~~~fs~de~Lv~v~~DGtV~ly~~~G~~~~~sl~~~~~~~~~~V~~~~~~~~G~vllt~~~~~~~v~n~  160 (691)
                      +.|++  +++++|+||.+|+|+||..||+|++|+++|++.+ +++.+.|+....|.+|++|.+|++++|.+++++.++++
T Consensus        79 ~~w~~--~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie-~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~  155 (829)
T KOG2280|consen   79 ILWKH--GELIGMGWSDDEELICVQKDGTVHVYGLLGEFIE-SNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGV  155 (829)
T ss_pred             HHhcC--CCeeeecccCCceEEEEeccceEEEeecchhhhc-ccccccccccCceeEEEEecCceEEEecCCcEEEEcCC
Confidence            99998  8999999999999999999999999999999998 55888888888999999999999999999999999999


Q ss_pred             CCceEEEcCCCCcCCC-CceEEEecCCcCCCCCeEEEEEeCCeEEEEecCCcc----cccCCCeeEEEECCCCCEEEEEe
Q 005559          161 ATMKVCELARPEVEEL-PHCVAVIEPKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFT  235 (691)
Q Consensus       161 ~~~~~~~l~~~~l~~~-~~~w~vi~~~~S~d~~~~vl~s~d~ti~l~d~~~~~----~~~~~~i~~Ia~SpnG~~IAl~t  235 (691)
                      ++|..+++++.|.... ++||++++|+++++.-..|..+....++..+....+    ....+.|.+|++|||+++||++|
T Consensus       156 ~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt  235 (829)
T KOG2280|consen  156 EEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYT  235 (829)
T ss_pred             CcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEe
Confidence            9999999998665444 699999998776655555544444555556555444    12347899999999999999999


Q ss_pred             eCCeEEEEecCCCCceeeccCCCCCCCCeEEEecCceEEEEEcCeEEEEcCCCCceEeecCCCeEEeecCCceEEEecCc
Q 005559          236 HDGRLVVNNTNFSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECDGVRILSNSS  315 (691)
Q Consensus       236 ~dg~i~I~ssd~~~~l~e~d~~~~~~p~q~~WCG~davvl~~~~~l~liGp~~~~v~f~~d~~~~l~~E~DGvRIit~~~  315 (691)
                      .+|+||+++.|++++++||++....+|.||+|||||+|+++|++.+.++||.|++|.|+||..++|++|+|||||||+++
T Consensus       236 ~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~WcgndaVvl~~e~~l~lvgp~gd~V~f~yd~t~~l~~E~DGVRI~t~t~  315 (829)
T KOG2280|consen  236 ETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGNDAVVLSWEVNLMLVGPPGDSVQFYYDETAILSAEVDGVRIITSTS  315 (829)
T ss_pred             cCCcEEEEecchhhhhhccCCCCCCchHhceeecCCceEEEEeeeEEEEcCCCCccccccCCCceeeeccCeeEEeccch
Confidence            99999999999999999999888889999999999999999999999999999999999999989999999999999999


Q ss_pred             ceeeeccchhhhhhcccCCCChhhHHHHHHHHHhccCchhHHHHHHhhhhHHHHHHHHHHHcccCCCHHHHHHHHHHHhh
Q 005559          316 MEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASLPKAVEACIDAAGHEFDISRQRTLLRAASY  395 (691)
Q Consensus       316 ~efL~~Vp~~~~~If~igS~~Pga~L~~A~~~~~~~~~~a~e~lr~i~~~L~~AV~~CI~AA~~e~d~~~Qk~LL~AAsf  395 (691)
                      +|||+|||.++++||+|||++|||+|++|.++|++++++|||+|++++++|.+||++||+||++||.|++||.|||||||
T Consensus       316 ~EFl~rvp~~~enIF~igS~ePgA~L~eA~q~~e~~S~kade~L~~~~e~L~~aV~~CI~aA~~ef~pe~QK~LL~AAsf  395 (829)
T KOG2280|consen  316 HEFLQRVPAETENIFKIGSTEPGALLYEAFQKMEQKSGKADEYLSEIREDLYKAVDDCIEAACDEFQPEEQKSLLRAASF  395 (829)
T ss_pred             HHHHHhCChhhhhHhhcCCCCchHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hchhhcCCChHHHHHHHhHhhhhhccCCCCCccccCHHHHhcCChHHHHHHHHHcCCHHHHHHHHHHhCCCh---hHHHH
Q 005559          396 GQAFCSNFQRDRIQEMCKTLRVLNAARDPEIGIPLSIQQYKSLTASVLIGRLINANCHLLALRISEYLGMNQ---EVVIM  472 (691)
Q Consensus       396 Gk~~~~~~~~~~fv~~c~~LRVLN~lr~~~igi~lT~~Q~~~l~~~~li~rL~~r~~~~lA~~I~~~l~~~~---~~Vl~  472 (691)
                      ||+|+.++|+++|+.+|+.|||||++|++.+|||||++||.+|+.+++|+||+.|++|.+|++||+++++|.   ++||.
T Consensus       396 Gk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~  475 (829)
T KOG2280|consen  396 GKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLL  475 (829)
T ss_pred             cccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998   99999


Q ss_pred             HHHHHHhhhcCCCChHHHHHHHHHHhcc--CCCCCHHHHHHHHHHhCcHHHHHHHHhcCCCCcCcccccccCCchHHHHH
Q 005559          473 HWACSKITASLAIPDVTLLEILLDKLKL--CKGISYAAVAAHADKSGRRKLAAMLVEHEPRSSKQVPLLLSIGEEDTALV  550 (691)
Q Consensus       473 hWA~~kI~~~~~~~D~~l~~~I~~kl~~--~~~is~a~IA~~A~~~GR~~LA~~Ll~~E~~~~~qVplLl~~~~~~~AL~  550 (691)
                      |||+.||+ +++.+|+++++.|.+||+.  .+||||++||++||++||++||++|+++||++..|||+||+|++++.||+
T Consensus       476 ~Wa~~kI~-~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~  554 (829)
T KOG2280|consen  476 EWARRKIK-QSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK  554 (829)
T ss_pred             HHHHHHHh-ccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence            99999995 5588999999999999998  99999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCchHHHHHHHHHHhhCChhhHHHHHhcChhhHHHHHHHHHhcCHHHHHHHHHhcCChhHHHHHHHHHHHhcCCC
Q 005559          551 KATESGDTDLVYLVIFHIWQKRPALEFFGMIQTRPLACDLFTVYARCYKHEFLKDFFLSTGQLQEVAFLLWKESWELGKN  630 (691)
Q Consensus       551 kA~~S~D~dLi~~vll~l~~~~~~~~f~~~l~~~~~a~~l~~~y~~~~~~~~L~~~y~q~d~~~~~~~~~l~~~~~~~~~  630 (691)
                      ||++|||||||++||+||+++++.++|+++|+..|+|.+||++|+|++|+..|+|||+|+|+++++|.++++.++.....
T Consensus       555 kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~  634 (829)
T KOG2280|consen  555 KAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETI  634 (829)
T ss_pred             HHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999998887766


Q ss_pred             CCCCCCCCCccchHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHHHHHHhhc-ccc
Q 005559          631 PMASNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAEEHAKLLSVIQEANKRC-CVF  687 (691)
Q Consensus       631 ~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~f~~~~~~~~~~Ll~~Q~~L~~~~-~~~  687 (691)
                      +          +|...|+.|...|.++++..|++|+++||+||+++|++||.+. |+|
T Consensus       635 ~----------~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f  682 (829)
T KOG2280|consen  635 E----------GRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSF  682 (829)
T ss_pred             c----------ccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            6          8999999999999999999999999999999999999999998 555

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0286 consensus G-protein beta subunit [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>PTZ00421 coronin; Provisional Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PLN00181 protein SPA1-RELATED; Provisional Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>PTZ00420 coronin; Provisional Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0295 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>KOG0645 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG0293 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>KOG0282 consensus mRNA splicing factor [Function unknown] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] Back     alignment and domain information
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] Back     alignment and domain information
>KOG2055 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] Back     alignment and domain information
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0289 consensus mRNA splicing factor [General function prediction only] Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] Back     alignment and domain information
>KOG1274 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2096 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0283 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK01742 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK05137 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] Back     alignment and domain information
>PRK03629 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK04922 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1407 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1539 consensus WD repeat protein [General function prediction only] Back     alignment and domain information
>PRK02889 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>KOG2048 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB Back     alignment and domain information
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0300 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PRK11028 6-phosphogluconolactonase; Provisional Back     alignment and domain information
>PRK04792 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>PRK00178 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG0641 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0269 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0294 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG0270 consensus WD40 repeat-containing protein [Function unknown] Back     alignment and domain information
>COG2319 FOG: WD40 repeat [General function prediction only] Back     alignment and domain information
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>PRK04043 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] Back     alignment and domain information
>KOG0302 consensus Ribosome Assembly protein [General function prediction only] Back     alignment and domain information
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] Back     alignment and domain information
>PRK01029 tolB translocation protein TolB; Provisional Back     alignment and domain information
>KOG1963 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2139 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>KOG4328 consensus WD40 protein [Function unknown] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>KOG1273 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] Back     alignment and domain information
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PLN02919 haloacid dehalogenase-like hydrolase family protein Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] Back     alignment and domain information
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>KOG0649 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] Back     alignment and domain information
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A Back     alignment and domain information
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 Back     alignment and domain information
>KOG2321 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1408 consensus WD40 repeat protein [Function unknown] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain Back     alignment and domain information
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] Back     alignment and domain information
>KOG1188 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] Back     alignment and domain information
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] Back     alignment and domain information
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] Back     alignment and domain information
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] Back     alignment and domain information
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] Back     alignment and domain information
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>KOG4227 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL Back     alignment and domain information
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A Back     alignment and domain information
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] Back     alignment and domain information
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only] Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>KOG3881 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain Back     alignment and domain information
>PF14727 PHTB1_N: PTHB1 N-terminus Back     alignment and domain information
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] Back     alignment and domain information
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain Back     alignment and domain information
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07202 Tcp10_C: T-complex protein 10 C-terminus; InterPro: IPR009852 Proteins in this entry include T-complex 10, involved in spermatogenesis in mice, and centromere protein J, which not only inhibits microtubule nucleation from the centrosome, but also depolymerises taxol-stabilised microtubules [, ] Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit Back     alignment and domain information
>PRK13616 lipoprotein LpqB; Provisional Back     alignment and domain information
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00320 WD40 WD40 repeats Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3914 consensus WD repeat protein WDR4 [Function unknown] Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>COG3391 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK11138 outer membrane biogenesis protein BamB; Provisional Back     alignment and domain information
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats Back     alignment and domain information
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation Back     alignment and domain information
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase Back     alignment and domain information
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region Back     alignment and domain information
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>PLN00033 photosystem II stability/assembly factor; Provisional Back     alignment and domain information
>smart00299 CLH Clathrin heavy chain repeat homology Back     alignment and domain information
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[] Back     alignment and domain information
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1334 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG1912 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A Back     alignment and domain information
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases Back     alignment and domain information
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01063 gyrA DNA gyrase, A subunit Back     alignment and domain information
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast) Back     alignment and domain information
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length Back     alignment and domain information
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] Back     alignment and domain information
>KOG4190 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query691
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 44.1 bits (103), Expect = 2e-04
 Identities = 72/502 (14%), Positives = 133/502 (26%), Gaps = 139/502 (27%)

Query: 247 FSSPVIDESCESALPPEQIAWCGMDSVLLYWNDMLVMVAPQAEPVQYFYDEPLVLIPECD 306
            S   ID    S             ++ L+W     +++ Q E VQ F +E L      +
Sbjct: 46  LSKEEIDHIIMSKDAVSG-------TLRLFW----TLLSKQEEMVQKFVEEVL----RIN 90

Query: 307 GVRILSNSSMEFLQRVPASTEQIFAIGSTSPAALLYDALDHFDRRSAKADENLRLIRASL 366
              ++S    E  Q  P+   +++          LY+    F + +    +    +R +L
Sbjct: 91  YKFLMSPIKTEQRQ--PSMMTRMY----IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL 144

Query: 367 PKAVEACIDAAGHEFDISRQRTLLRAAS----YGQAFCSNFQRDRIQEMCKTLRVLNAAR 422
            +                     LR A      G                KT   L+   
Sbjct: 145 LE---------------------LRPAKNVLIDGVLGSG-----------KTWVALDVCL 172

Query: 423 DPEI------GIP-LSIQQYKSLTASVLIGRLINANCHLLALRISEYL-GMNQEVVIMHW 474
             ++       I  L+++   S   +VL   ++    + +    +      +   + +H 
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNS-PETVLE--MLQKLLYQIDPNWTSRSDHSSNIKLRIHS 229

Query: 475 ACSKITASLAIPDV--TLLEIL--------LDKLKL-CK--------GISYAAVAAHADK 515
             +++   L        LL +L         +   L CK         ++    AA    
Sbjct: 230 IQAELRRLLKSKPYENCLL-VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 516 SGRRKLAAMLVEHE----------------PRSSKQV-PLLLS-IGEEDTALVKATESGD 557
                 +  L   E                PR      P  LS I       ++  +   
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA----ESIR--DGLA 342

Query: 558 TDLVYLVIFHIWQ--KRPALEFFGMIQTRPLACDLFTVYARCYKHE--FLKDFFLSTGQL 613
           T          W   K    +    I    L       Y + +     F     + T  L
Sbjct: 343 T----------WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL 392

Query: 614 QEVAFLLWKESWELGKNPMA-----SNGSALHGPRIKRIEKAHSLFSETKEHTFESKAAE 668
                L+W +  +   + M         S +     +      S++ E K       A  
Sbjct: 393 S----LIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL- 445

Query: 669 EHAKLLSVIQEANKRCCVFLFP 690
            H  ++             L P
Sbjct: 446 -HRSIVDHYNIPKTFDSDDLIP 466

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query691
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.78
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.76
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.75
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.73
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.73
d1nr0a1311 Actin interacting protein 1 {Nematode (Caenorhabdi 99.73
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.7
d1gxra_337 Groucho/tle1, C-terminal domain {Human (Homo sapie 99.65
d1erja_388 Tup1, C-terminal domain {Baker's yeast (Saccharomy 99.64
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.64
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.64
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.62
d1vyhc1317 Platelet-activating factor acetylhydrolase IB subu 99.62
d1nr0a2299 Actin interacting protein 1 {Nematode (Caenorhabdi 99.54
d1k8kc_371 Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur 99.49
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.47
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 99.47
d1tbga_340 beta1-subunit of the signal-transducing G protein 99.44
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.44
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.42
d1pgua1325 Actin interacting protein 1 {Baker's yeast (Saccha 99.41
d1k32a3360 Tricorn protease domain 2 {Archaeon Thermoplasma a 99.41
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.31
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 99.24
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.22
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 99.15
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 99.14
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 99.07
d1pgua2287 Actin interacting protein 1 {Baker's yeast (Saccha 99.06
d1sq9a_393 Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac 99.03
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 98.92
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 98.87
d1hzua2426 C-terminal (heme d1) domain of cytochrome cd1-nitr 98.81
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 98.81
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 98.73
d1l0qa2301 Surface layer protein {Archaeon Methanosarcina maz 98.69
d1pbyb_337 Quinohemoprotein amine dehydrogenase B chain {Para 98.68
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 98.58
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 98.51
d1qksa2432 C-terminal (heme d1) domain of cytochrome cd1-nitr 98.51
d1jmxb_346 Quinohemoprotein amine dehydrogenase B chain {Pseu 98.33
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 98.32
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 98.27
d2madh_373 Methylamine dehydrogenase, H-chain {Gram negative 98.21
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 98.16
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 98.06
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 97.97
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 97.92
d1ri6a_333 Putative isomerase YbhE {Escherichia coli [TaxId: 97.81
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 97.32
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 97.23
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 97.2
d2bgra1470 Dipeptidyl peptidase IV/CD26, N-terminal domain {P 97.03
d1q7fa_279 Brain tumor cg10719-pa {Fruit fly (Drosophila mela 96.77
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 96.16
d1mdah_368 Methylamine dehydrogenase, H-chain {Paracoccus den 95.62
d1k32a2281 Tricorn protease N-terminal domain {Archaeon Therm 94.85
d2ghsa1295 Regucalcin {Agrobacterium tumefaciens [TaxId: 358] 94.04
d2dg1a1319 Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 92.13
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 91.14
d2p4oa1302 Hypothetical protein All0351 homologue {Nostoc pun 90.59
d2hqsa1269 TolB, C-terminal domain {Escherichia coli [TaxId: 89.69
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 88.72
d1pjxa_314 Diisopropylfluorophosphatase (phosphotriesterase, 83.98
d1xfda1465 Dipeptidyl aminopeptidase-like protein 6, DPP6, N- 82.58
d1jofa_365 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu 81.93
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 80.93
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.7e-14  Score=116.99  Aligned_cols=253  Identities=10%  Similarity=0.073  Sum_probs=170.3

Q ss_pred             CCCEEEECCCCCEEEEEECCCHHHHHHCCCCCCEEEEECCC-C---CEEEEEEECCCCCCEEEEEECCCCE-EEEEEECC
Q ss_conf             98889995899838999558313433101479709999199-9---6257977048999879997537992-99999288
Q 005559           34 SRNKVACAPFGGPIAVIRDDSKIVQLYAESALRKLRIFNSA-G---VLISETVWKNPGGRLIGMSWSEDQT-LICVVQDG  108 (691)
Q Consensus        34 ~~~~vA~sp~GG~IAi~r~~~k~~~~~~~~~~~~I~Iys~s-G---~ll~si~~~~~~~~Iv~l~fs~de~-Lvvv~~dG  108 (691)
                      ....++++|+|..||+..             ++.|+||+.. +   ..+.........+.|.++.|+|+++ |++...||
T Consensus        53 ~V~~v~fs~~g~~latg~-------------dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          53 VVCAVTISNPTRHVYTGG-------------KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             CCCEEEECSSSSEEEEEC-------------BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             CEEEEEECCCCCEEEEEE-------------CCEEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCCCEEEEEECCC
T ss_conf             289999989999999997-------------9988997736776331168764048899689999867998898861233


Q ss_pred             EEEEEECCCC---EECCCCCCCCCCCCCCEEEEEEECCCEEEEECC-CEEEEEECCCCCEEEECCCCCCCCCCCEEEEEC
Q ss_conf             4999908987---002346898654436849999957823899618-829999528986487748998679993699946
Q 005559          109 TVYRYNIHAE---LIEPNASMGKECFEENVVECVFWGNGVVCVTEA-NRYFCMADFATMKVCELARPEVEELPHCVAVIE  184 (691)
Q Consensus       109 tV~iyd~~G~---~~~~sl~~~~~~~~~~V~~a~i~~~G~vilt~~-~~~~~v~n~~~~~~~~l~~~~l~~~~~~w~vi~  184 (691)
                      ++++|++...   ... .+..+    ...|..+.+.++|..+++.+ .....+++............   +....+++  
T Consensus       120 ~i~iwd~~~~~~~~~~-~~~~~----~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~---~~~~v~~l--  189 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKA-ELTSS----APACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG---HTDGASCI--  189 (337)
T ss_dssp             EEEEEECCCC--EEEE-EEECS----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC---CSSCEEEE--
T ss_pred             CCCCCCCCCCCCCCCC-CCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCC--
T ss_conf             2111111111111111-11111----11111111111111111111111111111111111111111---11111101--


Q ss_pred             CCCCCCCCEEEEEEECCEEEEEECCCCC----CCCCCCEEEEEECCCCCEEEEEEECCEEEEEECCCCCCEEECCCCCCC
Q ss_conf             8857899769999728819999369842----125998039998799978899851881999935999860110478889
Q 005559          185 PKYTMTGSVEVLIGTDAGILMLDEDGVQ----KVDDTLSQKMAVSPNGNFVACFTHDGRLVVNNTNFSSPVIDESCESAL  260 (691)
Q Consensus       185 ~~~S~~~~~~vlls~d~ti~~~d~~~~~----~~~~~~i~~Ia~SpnG~~iAl~t~dg~i~I~ssd~~~~l~e~d~~~~~  260 (691)
                       .+++++...+..+.++++++|+.....    ..+.+++..++++|+|++++..+.+|.+.+|+.+-.+....+. + ..
T Consensus       190 -~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-~~  266 (337)
T d1gxra_         190 -DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHL-H-ES  266 (337)
T ss_dssp             -EECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECC-C-SS
T ss_pred             -CCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCC-C-CC
T ss_conf             -23444321122356655321111110000024666615799971530300000025642111111111000012-4-56


Q ss_pred             CCCEEEEE---------CCCEEEEEEC----CEEEEECCCCC--CEEEECCCCEEEEECCCC-EEEEE
Q ss_conf             99737996---------5862899875----86799808998--447303998288532891-69990
Q 005559          261 PPEQIAWC---------GMDSVLLYWN----DMLVMVAPQAE--PVQYFYDEPLVLIPECDG-VRILS  312 (691)
Q Consensus       261 ~p~~l~WC---------G~d~vvl~~~----~~i~ligp~~~--~i~f~~~~~~~l~~E~DG-iRIit  312 (691)
                      ....+.|.         |.|..+..|+    ..+...++.+.  .+.|..++..++...-|| +|||.
T Consensus       267 ~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CCCEEEECCCCCEEEEEECCCEEEEEECCCCCEEEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEE
T ss_conf             54169998999999999489969999899997999926999879999927999999990899699997
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Back     information, alignment and structure
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} Back     information, alignment and structure
>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} Back     information, alignment and structure
>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure