Citrus Sinensis ID: 005569

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQEDEVGEVVTTCKNEPGPSIAAINTKGKVPNSETLRVQDAGLRNRKHVFVAVFVALLSVAAIYLFNKKHFF
ccccHHHHHHHHHcccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
cccccccEccccccccccccccccEEEEcccccccHHHHHHHHHHEEEEEEcEHHHHHHHHHHHHHHHHHHHHcccccHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccccccccccccccccccHccccccccccHEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHccccc
mgmneqavddtcignpepdkgylhevtlssgidmqekqidctMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIhgnndealefsangqlsningkskmknADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkvGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssatmynagdtddkellinptnnlagatvktSEDAVSLMKSVQEDEVGEVVTtcknepgpsiaaintkgkvpnsetlrvqdaglrnrKHVFVAVFVALLSVAAIYLFNKKHFF
mgmneqavddtcignpepdKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEivnvhhkissckHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLestknsevltmkEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINflkgnndsntkkVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSkaesktesveeqcivlsednfelknkqsfMRDKIKILESslnraniekaasakevnhRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQysgksssaTMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQEDEVGEVVTtcknepgpsiaaintkgkvpnsETLRVQDAGLRNRKHVFVAVFVALLSVAAIYLFNKKHFF
MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKlvnlhvllmyllARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQEDEVGEVVTTCKNEPGPSIAAINTKGKVPNSETLRVQDAGLRNRKHvfvavfvallsvaaIYLFNKKHFF
*********************YLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKM**************************KFQRVLSYFIHGNND**********************************************************LKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGS*************FI**********************************************************************************************************************************************LYSAIWDMETLIE*******************CIVLS*******************************************LMMEMVMQLATQRELIQKQVYSLTSENKLLVEKL************************************************************************************VQDAGLRNRKHVFVAVFVALLSVAAIYLFNKK***
***************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RKHVFVAVFVALLSVAAIYLFNKKHFF
*********DTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHD*****************QSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESL****************LTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQL**************SMLYSAIWDMETLIEDLK**************EQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQEDEVGEVVTTCKNEPGPSIAAINTKGKVPNSETLRVQDAGLRNRKHVFVAVFVALLSVAAIYLFNKKHFF
*****QAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKT******************************************SETLRVQDAGLRNRKHVFVAVFVALLSVAAIYLFNKKHFF
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MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIxxxxxxxxxxxxxxxxxxxxxVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxFQTSQEQLNEMDNFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxINFLKGNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQSMLYSAxxxxxxxxxxxxxxxxxxxxxxxxxxxxCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQEDEVGEVVTTCKNEPGPSIAAINTKGKVPNSETLRVQDAGLRNRKHVFVAVFVALLSVAAIYLFNKKHFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query690 2.2.26 [Sep-21-2011]
A8MQR0627 WPP domain-interacting ta yes no 0.797 0.877 0.518 1e-144
Q8L7E5703 WPP domain-interacting ta no no 0.924 0.907 0.363 4e-97
>sp|A8MQR0|WIT2_ARATH WPP domain-interacting tail-anchored protein 2 OS=Arabidopsis thaliana GN=WIT2 PE=1 SV=1 Back     alignment and function desciption
 Score =  511 bits (1316), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 306/590 (51%), Positives = 416/590 (70%), Gaps = 40/590 (6%)

Query: 43  MTVLTRVDLDLAYSSEKLVNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLF 102
           + +LT++++D AY+SEKL+NLHVLLM+LLA  +DLE   M   D +  S EKAL +DLL 
Sbjct: 24  LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query: 103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
           GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct: 82  GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query: 163 HVSELKMQSAKFQRVLSYFIHGN--NDEALEFSANGQLSNINGKSKMKNAD-QQRHILRM 219
            VSE+ +Q A+ +R L Y  +G   N+E++E         +  K  +K +D + ++ LRM
Sbjct: 137 QVSEITLQLAQLRRTLHYIRNGTSENEESVE---------LRQKYALKPSDLRHKNALRM 187

Query: 220 LEKSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVL 279
           LEKSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL
Sbjct: 188 LEKSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVL 247

Query: 280 MGISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN------ 333
            GISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T +      
Sbjct: 248 TGISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIV 307

Query: 334 SEVLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAE 393
           SEVLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAE
Sbjct: 308 SEVLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAE 367

Query: 394 SAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE 453
           S E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QE
Sbjct: 368 SGEAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQE 427

Query: 454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKI 513
           QQ+MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K 
Sbjct: 428 QQNMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKS 487

Query: 514 LESSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQY 573
           LE+ L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L      
Sbjct: 488 LEAMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL-----R 542

Query: 574 SGKSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQEDE 623
             + S+    N     DKEL  +   +          +  +L +S+QEDE
Sbjct: 543 VNQCSNTYQRNGSYAGDKELSFHADGH----------EIEALAESLQEDE 582
Together with WIT1, required for the nuclear envelope docking of RANGAP proteins in root tips.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L7E5|WIT1_ARATH WPP domain-interacting tail-anchored protein 1 OS=Arabidopsis thaliana GN=WIT1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query690
297738216735 unnamed protein product [Vitis vinifera] 0.950 0.892 0.553 0.0
255547013601 conserved hypothetical protein [Ricinus 0.859 0.986 0.599 0.0
147817708745 hypothetical protein VITISV_040555 [Viti 0.950 0.880 0.500 1e-179
359473487629 PREDICTED: WPP domain-interacting tail-a 0.772 0.847 0.589 1e-172
224111830502 predicted protein [Populus trichocarpa] 0.717 0.986 0.625 1e-162
449463561589 PREDICTED: WPP domain-interacting tail-a 0.808 0.947 0.547 1e-158
356502676607 PREDICTED: WPP domain-interacting tail-a 0.792 0.901 0.531 1e-154
356498101607 PREDICTED: WPP domain-interacting tail-a 0.775 0.881 0.534 1e-147
225451869707 PREDICTED: WPP domain-interacting tail-a 0.943 0.920 0.455 1e-143
145327191582 WPP domain-interacting tail-anchored pro 0.768 0.910 0.535 1e-142
>gi|297738216|emb|CBI27417.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  683 bits (1763), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/704 (55%), Positives = 498/704 (70%), Gaps = 48/704 (6%)

Query: 1   MGMNEQAVDDTCIGNPEPDKGYLHEVTLSSGIDMQEKQIDCTMTVLTRVDLDLAYSSEKL 60
           MGM+   VDDT +                +G  M+E  ++C + VL  +DLDLAYSSEKL
Sbjct: 54  MGMDNNVVDDTDM----------------NGKGMEE--LECAVKVLLSLDLDLAYSSEKL 95

Query: 61  VNLHVLLMYLLARGDDLETLVMENSDVAATSIEKALVYDLLFGILDSELREVERLLDTIH 120
           VNLHVLLM + AR +  E + ME   ++A SIEKALV+DLL GILDSE+RE+E  +DT+ 
Sbjct: 96  VNLHVLLMQVWARENVFEAMAMEKDHISADSIEKALVFDLLSGILDSEVREIENFMDTLQ 155

Query: 121 VEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQEHVSELKMQSAKFQRVLSY 180
            EIV+ H KI SC HLRE+F +ME+   KL DCE SLK+SQE V ++  Q AKFQRV   
Sbjct: 156 AEIVDAHKKIYSCSHLRELFNVMEE---KLIDCEESLKQSQEQVLKMNTQLAKFQRVFLE 212

Query: 181 FIH--GNNDEALEFSANGQLSNINGKSKMKNADQQRHILRMLEKSLARELDLEKKISELN 238
           F +  G NDE ++   NGQLSNIN K KM    QQRHILR+L+KSL RELDLEKK+ E+ 
Sbjct: 213 FEYQNGKNDENIDSRENGQLSNINLKLKMPAVRQQRHILRVLDKSLERELDLEKKLLEIR 272

Query: 239 QNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGISKEMLGRFQIVQFNLN 298
           Q+EE+LKLK+H TEQV F MEEAA  ++GRFLEAEN AEVLMGISKE++GR QI QFNLN
Sbjct: 273 QSEEELKLKMHLTEQVGFCMEEAAGAIYGRFLEAENLAEVLMGISKELVGRLQIAQFNLN 332

Query: 299 GSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKN-------SEVLTMKEKVKSLEEQLK 351
           GS+QRE+E K KL D +EQLKAK+   Q+LE   +       SEV T++EK++ LEEQLK
Sbjct: 333 GSIQREAEAKYKLLDCMEQLKAKETASQRLEKINSEPFNFDESEVFTLREKIQLLEEQLK 392

Query: 352 ESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSE 411
           ESE++L+NA+A  +  QEQL+ MDN IESLKE +  AES+AESAE K+T LT+TNLEL+E
Sbjct: 393 ESELQLKNAHASNEAMQEQLSGMDNLIESLKEGILKAESKAESAEGKLTLLTETNLELTE 452

Query: 412 EINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIWDMETLIED 471
           E+ FLK   DS T+K G LE QLRDL+IQLQ AK SSEASQEQQ+MLYSAIWDMETLIE+
Sbjct: 453 EMGFLK---DSTTEKAGSLEKQLRDLQIQLQHAKASSEASQEQQNMLYSAIWDMETLIEE 509

Query: 472 LKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANIEKAASAKE 531
           LKSKVSKAESKTE+ EEQCI+L+E NFEL  +  F+RDK+  LE +L++   EK ASA++
Sbjct: 510 LKSKVSKAESKTENAEEQCILLTETNFELNKELGFLRDKMDCLEKTLHQVKCEKTASAED 569

Query: 532 VNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSGKSSSATMYNAGDTDDK 591
           ++ RT+L+M+MVMQLA +RE IQKQ+YSLT +N++LVEK+Q +  ++S  MY  GD ++K
Sbjct: 570 ISIRTRLIMDMVMQLAFERERIQKQLYSLTEDNRILVEKIQKAKNNASVIMYGNGDGEEK 629

Query: 592 ELLINPTNNLAGATVKTSEDAVSLMKSVQEDEVGEVVTTCKNEPGP------SIAAINTK 645
           + L    N+      KT ++ V+  + +Q+ +V E     K+ P P      S++A +  
Sbjct: 630 DFLFVKHNSATATQAKTFKETVT--EPLQKSQVDE---PSKDSPEPETEVETSVSAKDAA 684

Query: 646 GKVPNSETLRVQDAGLRNRK--HVFVAVFVALLSVAAIYLFNKK 687
             V  SE   V   G R     ++FVAV V L+ VA IYLFNKK
Sbjct: 685 NVV--SELGAVNVVGERRLDLIYIFVAVLVLLIPVATIYLFNKK 726

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255547013|ref|XP_002514564.1| conserved hypothetical protein [Ricinus communis] gi|223546168|gb|EEF47670.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|147817708|emb|CAN75587.1| hypothetical protein VITISV_040555 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359473487|ref|XP_002267767.2| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|224111830|ref|XP_002315993.1| predicted protein [Populus trichocarpa] gi|222865033|gb|EEF02164.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449463561|ref|XP_004149502.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] gi|449481214|ref|XP_004156116.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356502676|ref|XP_003520143.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356498101|ref|XP_003517892.1| PREDICTED: WPP domain-interacting tail-anchored protein 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225451869|ref|XP_002278644.1| PREDICTED: WPP domain-interacting tail-anchored protein 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|145327191|ref|NP_001077797.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|334183748|ref|NP_001185353.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196738|gb|AEE34859.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] gi|332196739|gb|AEE34860.1| WPP domain-interacting tail-anchored protein 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query690
TAIR|locus:2205470627 WIT2 "AT1G68910" [Arabidopsis 0.818 0.901 0.494 8.8e-134
TAIR|locus:2148057703 WIT1 "AT5G11390" [Arabidopsis 0.795 0.780 0.330 7.1e-61
DICTYBASE|DDB_G0290503 1492 DDB_G0290503 [Dictyostelium di 0.762 0.352 0.195 1.7e-18
UNIPROTKB|F1N8D3848 Gga.11048 "Uncharacterized pro 0.756 0.615 0.226 6.5e-16
UNIPROTKB|O15083 957 ERC2 "ERC protein 2" [Homo sap 0.701 0.505 0.219 5.8e-15
UNIPROTKB|F1NZF51940 Gga.27138 "Uncharacterized pro 0.807 0.287 0.216 6.9e-15
MGI|MGI:1098749 957 Erc2 "ELKS/RAB6-interacting/CA 0.701 0.505 0.217 7.4e-15
ZFIN|ZDB-GENE-040910-6 1000 sycp1 "synaptonemal complex pr 0.589 0.407 0.246 1e-14
UNIPROTKB|P025651940 MYH3 "Myosin-3" [Gallus gallus 0.807 0.287 0.216 1.1e-14
SGD|S000004300 911 IMH1 "Protein involved in vesi 0.698 0.529 0.207 1.5e-14
TAIR|locus:2205470 WIT2 "AT1G68910" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1311 (466.6 bits), Expect = 8.8e-134, P = 8.8e-134
 Identities = 292/591 (49%), Positives = 405/591 (68%)

Query:    43 MTVLTRVDLDLAYSSEKXXXXXXXXXXXXARGDDLETLVMENSDVAATSIEKALVYDLLF 102
             + +LT++++D AY+SEK            A  +DLE   M   D +  S EKAL +DLL 
Sbjct:    24 LRMLTKLEIDSAYTSEKLMNLHVLLMHLLAWDNDLEG--MGTLDSSPASFEKALTFDLLC 81

Query:   103 GILDSELREVERLLDTIHVEIVNVHHKISSCKHLREVFTIMEKMEKKLHDCEGSLKESQE 162
             GIL+SE++EV+ +LD +  +IV+  +KISSCKH   +      +E KL +   SLK+S+ 
Sbjct:    82 GILESEVKEVDEVLDVLEAQIVDTSYKISSCKHGNYIV-----IEGKLGESAESLKQSRG 136

Query:   163 HVSELKMQSAKFQRVLSYFIHGNNDEALEFSANGQLSNINGKSKMKNAD-QQRHILRMLE 221
              VSE+ +Q A+ +R L Y  +G ++       N +   +  K  +K +D + ++ LRMLE
Sbjct:   137 QVSEITLQLAQLRRTLHYIRNGTSE-------NEESVELRQKYALKPSDLRHKNALRMLE 189

Query:   222 KSLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMG 281
             KSL+REL+LEKK+ E  QNEEQLKLKLH+TE+V+ RMEEA+E +WGRFLEA+NS+EVL G
Sbjct:   190 KSLSRELELEKKLMEFQQNEEQLKLKLHYTEEVSSRMEEASEFIWGRFLEADNSSEVLTG 249

Query:   282 ISKEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLEST--KNSE---- 335
             ISKE++GR QI+QF+LNGS QRESELKSKL D   QL+AKD+++QKLE T  +NSE    
Sbjct:   250 ISKELVGRLQILQFSLNGSAQRESELKSKLEDCTVQLEAKDLLVQKLEGTISENSEIVSE 309

Query:   336 VLTMKEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESA 395
             VLT++E VKS E++LK +++ L++ NA  Q     L EM+N  ES+KE+L+ AESRAES 
Sbjct:   310 VLTLREYVKSAEQKLKNTDLELKSVNASKQEILVHLAEMENANESVKENLFEAESRAESG 369

Query:   396 EEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQ 455
             E K+ +L   NLEL+EE+NFLK  +D  TKKV  LE Q+R+LE+Q+Q +KVSSEA+QEQQ
Sbjct:   370 EAKIKELDAANLELTEELNFLKDADDKKTKKVNSLEKQVRELEVQVQNSKVSSEANQEQQ 429

Query:   456 SMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILE 515
             +MLYSAIWDMETLIEDLKSK SKAES+TE+VEEQCIVLS  N EL    SF+R K K LE
Sbjct:   430 NMLYSAIWDMETLIEDLKSKASKAESRTETVEEQCIVLSTTNSELNKDVSFLRQKAKSLE 489

Query:   516 SSLNRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSENKLLVEKLQYSG 575
             + L+ AN EK   A+E+  R K++M+M++QL+++RE IQ+Q+YSL  ENK+L  ++    
Sbjct:   490 AMLDLANNEKERYAQEITTRNKVLMDMMLQLSSERERIQEQLYSLAKENKIL--RVN--- 544

Query:   576 KSSSATMYNAGDTDDKELLINPTNNLAGATVKTSEDAVSLMKSVQEDEVGE 626
             + S+    N     DKEL  +   +   A  ++ ++     +  ++  V E
Sbjct:   545 QCSNTYQRNGSYAGDKELSFHADGHEIEALAESLQEDERTREEPEKQSVSE 595
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
TAIR|locus:2148057 WIT1 "AT5G11390" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290503 DDB_G0290503 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1N8D3 Gga.11048 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O15083 ERC2 "ERC protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NZF5 Gga.27138 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:1098749 Erc2 "ELKS/RAB6-interacting/CAST family member 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040910-6 sycp1 "synaptonemal complex protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P02565 MYH3 "Myosin-3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000004300 IMH1 "Protein involved in vesicular transport" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A8MQR0WIT2_ARATHNo assigned EC number0.51860.79710.8771yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query690
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-11
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-09
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-08
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-07
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 4e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
PLN02939 977 PLN02939, PLN02939, transferase, transferring glyc 3e-05
COG5185622 COG5185, HEC1, Protein involved in chromosome segr 3e-05
PRK02224 880 PRK02224, PRK02224, chromosome segregation protein 4e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-04
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.002
pfam07888546 pfam07888, CALCOCO1, Calcium binding and coiled-co 0.002
TIGR04211198 TIGR04211, SH3_and_anchor, SH3 domain protein 0.002
PRK02224880 PRK02224, PRK02224, chromosome segregation protein 0.003
pfam00261237 pfam00261, Tropomyosin, Tropomyosin 0.003
pfam05557 722 pfam05557, MAD, Mitotic checkpoint protein 0.004
PRK04778569 PRK04778, PRK04778, septation ring formation regul 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 65.1 bits (159), Expect = 9e-11
 Identities = 72/359 (20%), Positives = 165/359 (45%), Gaps = 32/359 (8%)

Query: 223  SLARELDLEKKISELNQNEEQLKLKLHHTEQVAFRMEEAAEVVWGRFLEAENSAEVLMGI 282
            SLA++ +L++   EL + E QL+      + +   +              E+  E L   
Sbjct: 662  SLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSL-----------EDLLEELRRQ 710

Query: 283  SKEMLGRFQIVQFNLNGSLQRESELKSKLGDF---IEQLKAKDMVLQKLESTKNSEVLTM 339
             +E+  + + ++  L    +   +L+S+L +    +E+L+ +   LQ+       E+ ++
Sbjct: 711  LEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESL 770

Query: 340  KEKVKSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKV 399
            +E +  L+E+++E E + Q      +  +E+L E +  +++L+  L   E R E  E+++
Sbjct: 771  EEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEI 830

Query: 400  TQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLY 459
             +L +   EL E+++ L+   +   K++  L+ +L +LE + ++ +   +  +E++  L 
Sbjct: 831  EELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELE 890

Query: 460  SAIWDMETLIEDLKSKVSKAESKTESVEEQC----IVLSEDNFELKNKQSFM-----RDK 510
              + ++E+ + +LK ++ K   + E +E +     + L E   EL+ +           +
Sbjct: 891  EELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELERE 950

Query: 511  IKILESSL------NRANIEKAASAKEVNHRTKLMMEMVMQLATQRELIQKQVYSLTSE 563
            I+ LE  +      N   IE+    +EV  R + +      L   +E + + +  L  E
Sbjct: 951  IERLEEEIEALGPVNLRAIEE---YEEVEERYEELKSQREDLEEAKEKLLEVIEELDKE 1006

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups Back     alignment and domain information
>gnl|CDD|227512 COG5185, HEC1, Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|116500 pfam07888, CALCOCO1, Calcium binding and coiled-coil domain (CALCOCO1) like Back     alignment and domain information
>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein Back     alignment and domain information
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin Back     alignment and domain information
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein Back     alignment and domain information
>gnl|CDD|179877 PRK04778, PRK04778, septation ring formation regulator EzrA; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 690
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 98.85
PRK02224 880 chromosome segregation protein; Provisional 98.32
KOG01611930 consensus Myosin class II heavy chain [Cytoskeleto 98.12
PRK02224880 chromosome segregation protein; Provisional 98.12
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.96
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.94
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.91
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.83
COG11961163 Smc Chromosome segregation ATPases [Cell division 97.8
TIGR021691164 SMC_prok_A chromosome segregation protein SMC, pri 97.77
TIGR021681179 SMC_prok_B chromosome segregation protein SMC, com 97.61
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.49
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 97.41
PF10174775 Cast: RIM-binding protein of the cytomatrix active 97.37
PHA02562562 46 endonuclease subunit; Provisional 97.31
KOG0996 1293 consensus Structural maintenance of chromosome pro 97.01
KOG0971 1243 consensus Microtubule-associated protein dynactin 96.97
PRK04778569 septation ring formation regulator EzrA; Provision 96.87
KOG1003205 consensus Actin filament-coating protein tropomyos 96.84
COG11961163 Smc Chromosome segregation ATPases [Cell division 96.75
PF00038312 Filament: Intermediate filament protein; InterPro: 96.49
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.33
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 96.24
KOG1003205 consensus Actin filament-coating protein tropomyos 96.03
PRK04863 1486 mukB cell division protein MukB; Provisional 95.99
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 95.88
PHA02562562 46 endonuclease subunit; Provisional 95.79
PLN02939 977 transferase, transferring glycosyl groups 95.55
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 95.44
PF01576 859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 95.29
PRK03918880 chromosome segregation protein; Provisional 95.24
PF05557 722 MAD: Mitotic checkpoint protein; InterPro: IPR0086 94.93
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.92
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 94.92
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 94.33
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 94.26
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 94.25
PRK01156895 chromosome segregation protein; Provisional 94.1
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 93.84
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 93.54
PF10473140 CENP-F_leu_zip: Leucine-rich repeats of kinetochor 93.48
PRK11637428 AmiB activator; Provisional 93.05
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 92.97
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 92.67
PF06160560 EzrA: Septation ring formation regulator, EzrA ; I 92.28
PF05701522 WEMBL: Weak chloroplast movement under blue light; 92.25
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 92.23
KOG0996 1293 consensus Structural maintenance of chromosome pro 92.08
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 91.9
COG5185622 HEC1 Protein involved in chromosome segregation, i 91.9
KOG00181141 consensus Structural maintenance of chromosome pro 91.7
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.2
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.19
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 90.81
PF05701522 WEMBL: Weak chloroplast movement under blue light; 90.23
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 90.09
PF05335188 DUF745: Protein of unknown function (DUF745); Inte 89.8
KOG0977546 consensus Nuclear envelope protein lamin, intermed 89.49
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 89.48
KOG0971 1243 consensus Microtubule-associated protein dynactin 88.92
PRK09039343 hypothetical protein; Validated 86.46
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 86.35
PRK04863 1486 mukB cell division protein MukB; Provisional 86.29
PF00038312 Filament: Intermediate filament protein; InterPro: 85.3
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 85.23
PRK11637428 AmiB activator; Provisional 84.77
KOG0933 1174 consensus Structural maintenance of chromosome pro 84.05
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 83.66
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 83.34
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 83.08
PRK03918 880 chromosome segregation protein; Provisional 82.69
PRK10884206 SH3 domain-containing protein; Provisional 82.66
KOG09331174 consensus Structural maintenance of chromosome pro 82.5
TIGR02977219 phageshock_pspA phage shock protein A. Members of 81.41
COG1842225 PspA Phage shock protein A (IM30), suppresses sigm 80.92
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information 
Probab=98.85  E-value=4.8e-08  Score=97.18  Aligned_cols=203  Identities=23%  Similarity=0.324  Sum_probs=163.1

Q ss_pred             hhhHHHHHHHHhhhhHHHHHhhhcCchhhhhHHHHHHHHHHHHHHhhhhhhhhhhchhh-------hHH-------HHhh
Q 005569          308 KSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKVKSLEEQLKESEIRLQNANACFQT-------SQE-------QLNE  373 (690)
Q Consensus       308 kSKLe~~~~ql~~k~~~l~Kle~~~~sE~~tL~eKV~sLEkqLrESe~QL~~a~AS~ea-------~~e-------qisd  373 (690)
                      ..++..+-.+|+.......+    ...|+.+|..|+++||..|...+..|..+..-.+.       +..       ....
T Consensus        14 ~~~~~~~~~~l~~~~~~~~~----aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~   89 (237)
T PF00261_consen   14 EERLEEAEEKLKEAEKRAEK----AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQS   89 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            33444444444444433333    45689999999999999999998877776644333       221       2345


Q ss_pred             hHHHHHHHHHhhhhhhhhhhhHHHhhhhhccchhhhHHHhhhhccCCCCCcchhhhHHHHHhhHHHHHHHhHhhhhhhHH
Q 005569          374 MDNFIESLKESLYGAESRAESAEEKVTQLTDTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQE  453 (690)
Q Consensus       374 MEnvIedLKekv~kAESRAe~AE~kc~~LteTN~ELneEL~fLk~~~~~~s~kv~~LEkqLrEsd~QLqhAkAS~eAs~E  453 (690)
                      .+.-|+.|-..+..|..+++.|+.||.-....-.-+..+|.-.-       +|++.+|.++++++.+|.....+......
T Consensus        90 ~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aE-------eR~e~~E~ki~eLE~el~~~~~~lk~lE~  162 (237)
T PF00261_consen   90 DEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAE-------ERAEAAESKIKELEEELKSVGNNLKSLEA  162 (237)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhhchhHHHHHHHHHHHHHHHHHhhh
Confidence            67778888889999999999999998877776666777776544       49999999999999999988888877777


Q ss_pred             hhhhHHHHHHhHHHHHHHHhhhhhhhcccccccccceeeecccchhhhhhhhhhhhHHHHHHHhHhHH
Q 005569          454 QQSMLYSAIWDMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRA  521 (690)
Q Consensus       454 qQ~MLysti~DME~lIeDLKsKvsKAEsraesaE~kCilLSetN~ELneELsFLR~R~e~LE~sL~~A  521 (690)
                      +..-.+...-++|.=|.+|..++..||+||+.||-+|.-|--.+..|..+|...+.+..++..-|+++
T Consensus       163 ~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  163 SEEKASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777888899999999999999999999999999999999999999999999999999999999875

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK01156 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02977 phageshock_pspA phage shock protein A Back     alignment and domain information
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query690
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-14
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 1e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 2e-04
2efr_A155 General control protein GCN4 and tropomyosin 1 Al; 6e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 80.3 bits (198), Expect = 1e-15
 Identities = 55/307 (17%), Positives = 125/307 (40%), Gaps = 10/307 (3%)

Query: 284  KEMLGRFQIVQFNLNGSLQRESELKSKLGDFIEQLKAKDMVLQKLESTKNSEVLTMKEKV 343
             E L R +  Q      L+   +  ++L +    L+ K     +L +      + +  K 
Sbjct: 863  DEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKK 922

Query: 344  KSLEEQLKESEIRLQNANACFQTSQEQLNEMDNFIESLKESLYGAESRAESAEEKVTQLT 403
            + LEE L E E R++      Q  Q +  +M   +  L+E L   E+  +  + +     
Sbjct: 923  QELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTAD 982

Query: 404  DTNLELSEEINFLKGNNDSNTKKVGILENQLRDLEIQLQQAKVSSEASQEQQSMLYSAIW 463
                ++ ++I  ++  N+  TK+  +LE ++ DL   L + +  ++   + ++   S I 
Sbjct: 983  GKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMIS 1042

Query: 464  DMETLIEDLKSKVSKAESKTESVEEQCIVLSEDNFELKNKQSFMRDKIKILESSLNRANI 523
            ++E  ++  +    + E     +E +   L E   EL+ + + ++ ++   E  L  A  
Sbjct: 1043 ELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALA 1102

Query: 524  EKAASAKEVNHRTKLMMEMVMQLA----------TQRELIQKQVYSLTSENKLLVEKLQY 573
                   + N+  K + E+   ++            R   +KQ   L+ E + L  +L+ 
Sbjct: 1103 RLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELED 1162

Query: 574  SGKSSSA 580
            +  +++ 
Sbjct: 1163 TLDTTAT 1169
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Length = 284 Back     alignment and structure
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A Length = 155 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00