Citrus Sinensis ID: 005580
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 690 | 2.2.26 [Sep-21-2011] | |||||||
| Q66GI4 | 572 | Proteinaceous RNase P 1, | yes | no | 0.471 | 0.568 | 0.516 | 1e-83 | |
| F4JKB6 | 576 | Proteinaceous RNase P 3 O | no | no | 0.465 | 0.557 | 0.412 | 5e-70 | |
| Q680B9 | 528 | Proteinaceous RNase P 2 O | no | no | 0.465 | 0.607 | 0.412 | 4e-63 | |
| P0C896 | 576 | Pentatricopeptide repeat- | no | no | 0.134 | 0.161 | 0.268 | 9e-05 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.221 | 0.242 | 0.259 | 0.0001 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.150 | 0.201 | 0.25 | 0.0002 | |
| Q8L6Y3 | 593 | Pentatricopeptide repeat- | no | no | 0.133 | 0.155 | 0.27 | 0.0004 | |
| Q9ZUA2 | 559 | Pentatricopeptide repeat- | no | no | 0.175 | 0.216 | 0.256 | 0.0004 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.111 | 0.127 | 0.301 | 0.0004 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.221 | 0.242 | 0.265 | 0.0006 |
| >sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 311 bits (796), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 170/329 (51%), Positives = 229/329 (69%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDCY 688
P NRAL+EKWKNA ALYATP GSNDD Y
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWY 477
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 202/337 (59%), Gaps = 16/337 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCY 688
R+ ++ P +R L+E+W N + LYATP GSNDD Y
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWY 483
|
Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 243 bits (620), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/337 (41%), Positives = 205/337 (60%), Gaps = 16/337 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCY 688
R+ ++ P +R L+E+W + LYATP GSNDD Y
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWY 424
|
Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ + ++E+M + MN + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA V M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Y3|PP396_ARATH Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF----DMVKRMKSLGINPRLRSY 425
+ E++++M VP + + R S G+ A+ DMVKR G+NP + +Y
Sbjct: 283 QALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKR----GVNPDVFTY 338
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+S C G D+AC + M GV P++ + +++
Sbjct: 339 NTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQ 378
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++K MK G+ P SY P ++ FC G +D A E M+ G P+
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D+ + KL
Sbjct: 407 NTVLATLCKNGKADQALEIFGKL 429
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 73/158 (46%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + T + D D A + K+M S+G++P + +Y
Sbjct: 415 EEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNIL 474
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG + KA V E++ + P+ ++ +AGK + + L L S++
Sbjct: 475 LDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNL--SLK 532
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
VSP +VIA R G K+ +SL+K E+
Sbjct: 533 GVSP---NVIAYNTMISGFCRKGSKEEADSLLKKMKED 567
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 690 | ||||||
| 359484351 | 816 | PREDICTED: pentatricopeptide repeat-cont | 0.860 | 0.727 | 0.608 | 0.0 | |
| 297738805 | 751 | unnamed protein product [Vitis vinifera] | 0.802 | 0.737 | 0.619 | 0.0 | |
| 255546443 | 745 | multidrug resistance pump, putative [Ric | 0.772 | 0.715 | 0.615 | 0.0 | |
| 356527775 | 724 | PREDICTED: pentatricopeptide repeat-cont | 0.627 | 0.598 | 0.599 | 1e-173 | |
| 449465334 | 633 | PREDICTED: proteinaceous RNase P 1, chlo | 0.759 | 0.827 | 0.580 | 1e-167 | |
| 357520987 | 668 | Pentatricopeptide repeat-containing prot | 0.640 | 0.661 | 0.569 | 1e-157 | |
| 357520951 | 702 | Pentatricopeptide repeat-containing prot | 0.640 | 0.629 | 0.569 | 1e-157 | |
| 242064790 | 632 | hypothetical protein SORBIDRAFT_04g01032 | 0.857 | 0.936 | 0.444 | 1e-148 | |
| 224119796 | 461 | predicted protein [Populus trichocarpa] | 0.473 | 0.709 | 0.751 | 1e-141 | |
| 413936385 | 684 | hypothetical protein ZEAMMB73_755879 [Ze | 0.684 | 0.690 | 0.493 | 1e-140 |
| >gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 697 bits (1798), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/643 (60%), Positives = 462/643 (71%), Gaps = 49/643 (7%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTM-------NSTELGDSRD-----------MDNNGQLDYGS-----SP 287
+G R+LD S+ + E GD+ + NN Y + SP
Sbjct: 176 TGSRSLDMLSPSSEVRGGVSEDLAEFGDTSKKNFGGPESKIPVSNNAMSVYSTKIHQNSP 235
Query: 288 --MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345
+++ S DDLD + E + L Q SN + NSQLL+G+ +L +G DD + KK
Sbjct: 236 KKVLNSNRSAFEVAKDDLDGSITEMDKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKK 295
Query: 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
+ DN EIR+SED KKYA +RGFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDM
Sbjct: 296 E---DN----EIRVSEDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDM 348
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFDMVK+MK LGINPRLRSYGPALS FCNNGD++KA VEEHMLEHGVYPEEPELEALLR
Sbjct: 349 AFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLR 408
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V +EAGK D+VYY+LHKLRTSVR+VS STA++I KWF S AA GK W++ LI + +
Sbjct: 409 VGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIV 468
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
N GGGWHG GWLGKGKW VSHT VG D LC CCGEKLA IDLDP ETEKFAESVASIAIK
Sbjct: 469 NGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIK 528
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
RE+NSSFQKFQKWLDYYGP+EAVVDAANVGL+SQR F P++VNA+VNGIRQ PSKKWPL
Sbjct: 529 REKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPL 588
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCY 688
I+LHN+RITG KMD+P NRALIEKWKNADALY TPTGSNDD Y
Sbjct: 589 IILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDWY 631
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 690 bits (1781), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/618 (61%), Positives = 446/618 (72%), Gaps = 64/618 (10%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+G RT FEV+ DDLD + E
Sbjct: 176 TGSRT---FEVAK-------------------------------------DDLDGSITEM 195
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
+ L Q SN + NSQLL+G+ +L +G DD + KK+ DN EIR+SED KKYA +R
Sbjct: 196 DKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKKE---DN----EIRVSEDFKKYALRR 248
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
GFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDMAFDMVK+MK LGINPRLRSYGPALS
Sbjct: 249 GFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALS 308
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
FCNNGD++KA VEEHMLEHGVYPEEPELEALLRV +EAGK D+VYY+LHKLRTSVR+V
Sbjct: 309 AFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQV 368
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S STA++I KWF S AA GK W++ LI + + N GGGWHG GWLGKGKW VSHT VG
Sbjct: 369 SHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVG 428
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
D LC CCGEKLA IDLDP ETEKFAESVASIAIKRE+NSSFQKFQKWLDYYGP+EAVVD
Sbjct: 429 ADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVD 488
Query: 611 AANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKW 670
AANVGL+SQR F P++VNA+VNGIRQ PSKKWPLI+LHN+RITG KMD+P NRALIEKW
Sbjct: 489 AANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKW 548
Query: 671 KNADALYATPTGSNDDCY 688
KNADALY TPTGSNDD Y
Sbjct: 549 KNADALYTTPTGSNDDWY 566
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis] gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 664 bits (1712), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/562 (61%), Positives = 423/562 (75%), Gaps = 29/562 (5%)
Query: 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG 205
K K ++ ++ + +ME++ KV+ K SK++K D ++ + R+ELD C KRG
Sbjct: 10 KERKYMDNQLISGRMEKKPRKGSDNKVKEEKSGKWSKRNKGD-PQEVKFRLELDKCCKRG 68
Query: 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265
DVM AI+LYD AQREGIK+GQYHY VLLYLCSSAA GVV+P KSG G R ++ VS
Sbjct: 69 DVMAAIQLYDLAQREGIKMGQYHYTVLLYLCSSAAAGVVQPGKSGRGGRASNSLAVSDEV 128
Query: 266 ST-------ELGDSRDMDN-----------NGQLDYGSSP-MIDKLESNSSYRFDDLDST 306
S+ EL D D+D N +D G +P DK+E SS RF+D DST
Sbjct: 129 SSASVVEFRELRDKNDVDATESDTKILNNVNKVIDSGRNPGSKDKMELKSSNRFNDSDST 188
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
NE++NL Q N Q L+ S + D + D + I +SED KKY
Sbjct: 189 SNERKNLSQIPIVVSDSNYQQLECLSFPAKNNDGKY---------HDGNGILVSEDIKKY 239
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A +RGFEIYEKMC+D++PMNEA+LTAV R+AMSMG+GDMAFDMVK+MK LG+NPRLRSYG
Sbjct: 240 ALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNPRLRSYG 299
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL+ FC++GD DKA +VE+HML+HGV+PEEPELEALLRVSVEAGKGD+VYYLLHKLRTS
Sbjct: 300 PALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLLHKLRTS 359
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVSPSTA++I +WF SK A+R+GK KW++ ++K+ + N GGGWHG GWLGKGKW VS
Sbjct: 360 VRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKGKWTVSC 419
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
++VG DA CK CG+KLA IDLDP ETE FAESVASIAIKRE++SSFQKFQKWLDYYGPFE
Sbjct: 420 SSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLDYYGPFE 479
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AVVD ANVGL Q+ F P+++NA+ NGIRQK PSKKWPLIVLHNRR+TGHKMD+PVN++L
Sbjct: 480 AVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDEPVNKSL 539
Query: 667 IEKWKNADALYATPTGSNDDCY 688
+EKWK+ADALYATPTGSNDD Y
Sbjct: 540 VEKWKHADALYATPTGSNDDWY 561
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 615 bits (1585), Expect = e-173, Method: Compositional matrix adjust.
Identities = 299/499 (59%), Positives = 362/499 (72%), Gaps = 66/499 (13%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +L+ LDMCSKRGDVMGA+ LYD A EG+KLGQ+HY VLLYLCSSAAVGVV+PAKSG
Sbjct: 106 EVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSG 165
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
SG RTL+ S + S E+ N FD
Sbjct: 166 SGARTLN----SHVYSNEV------------------------PNEGTHFD--------- 188
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQ 369
LDG++ L +++ + DEI L SED K+YA Q
Sbjct: 189 -----------------LDGKAELNS-----------DLNSTEKDEILLVSEDVKRYALQ 220
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
RGFE+Y+ MCLD+V MNEA+LTAV RMAMSMGDGD AF+MV++MK LGI+PRLRSYGPAL
Sbjct: 221 RGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPAL 280
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
FCNNG++DKA +VE+HML+HGVYPEEPELEALLRVSV AG D+VYY+LHKLR+ VRK
Sbjct: 281 FTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRK 340
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
VSP+T+ +I WF SK+A+R+GK+KW+E LI++ +EN GGGWHG GWLGKGKW HTT+
Sbjct: 341 VSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTI 400
Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
G D +CKCC +L IDLDP+ETE FA+SVAS+A+ RE+ S+FQKFQKWLDY GPFEAVV
Sbjct: 401 GKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVV 460
Query: 610 DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEK 669
DAANVGL+ Q F P ++NAV N IRQ+ PSKK+PLI+LHN+RI G KMD+P+NRALI+K
Sbjct: 461 DAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDK 520
Query: 670 WKNADALYATPTGSNDDCY 688
W NADALYATPTGSNDD Y
Sbjct: 521 WNNADALYATPTGSNDDWY 539
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 596 bits (1536), Expect = e-167, Method: Compositional matrix adjust.
Identities = 325/560 (58%), Positives = 396/560 (70%), Gaps = 36/560 (6%)
Query: 129 MSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDR 188
M G S L++ +K S+ D K++++ K + +EKG K K +
Sbjct: 1 MGDGISFLKTSTDSASLKVSR------DGGKIKEKR------KGNQVVEEKG-KLLKGNN 47
Query: 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248
F R LDMCSK GD +GAI+LY+ AQ+EGI L QYHY V+LYLCSSAA+GV++PAK
Sbjct: 48 ETPF--RANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCSSAALGVIQPAK 105
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
SG G +T + +S + S E N LD S + +Y +L ST N
Sbjct: 106 SGYGNQTSISLTLSKVGSYE--------NPIILDEQHSTKTSYVSKGGNYGRTEL-STEN 156
Query: 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368
++ N S+G ++D + N+ + K W +D + I + ED KKYA
Sbjct: 157 DRSN----SDG-------MMDNKENIFH-TNGSMVPKAWILDEKSHSNILVDEDFKKYAL 204
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ GFEIYEKMC + +PMNEA+LT+V RMAMSMGDGD AFDMVK+MK LG+NPRLRSYGPA
Sbjct: 205 ETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNPRLRSYGPA 264
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
LS FC NG ++KA SVE+HMLEHGVYPEEPEL ALLRVS+ A ++VYYLLHKLRTSVR
Sbjct: 265 LSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLLHKLRTSVR 324
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V PSTAD+I WF SK+AAR+GK K + +IK + N GGGWHGLGWLG+GKW VS T
Sbjct: 325 QVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRGKWSVSSTN 384
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VG D LCK CGEKLA IDLDPIETE FAESVA+I +RE+NSSFQKFQKWL+YYGPFEAV
Sbjct: 385 VGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLEYYGPFEAV 444
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGL+SQR F P++VN + NGIRQK PSKKWPLI+LHNRRITG KM++PVN+ LIE
Sbjct: 445 IDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEEPVNKTLIE 504
Query: 669 KWKNADALYATPTGSNDDCY 688
KWKNADALYATPTGSNDD Y
Sbjct: 505 KWKNADALYATPTGSNDDWY 524
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1451), Expect = e-157, Method: Compositional matrix adjust.
Identities = 286/502 (56%), Positives = 348/502 (69%), Gaps = 60/502 (11%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 75 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 117
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 118 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 149
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD + I +SE K+Y
Sbjct: 150 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKD----RDKRNGIMVSEVVKEY 194
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494
Query: 667 IEKWKNADALYATPTGSNDDCY 688
+++W NA+ LYATPTGSNDD Y
Sbjct: 495 VDRWNNANVLYATPTGSNDDWY 516
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 562 bits (1449), Expect = e-157, Method: Compositional matrix adjust.
Identities = 286/502 (56%), Positives = 348/502 (69%), Gaps = 60/502 (11%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 109 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 151
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 152 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 183
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD + I +SE K+Y
Sbjct: 184 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKD----RDKRNGIMVSEVVKEY 228
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528
Query: 667 IEKWKNADALYATPTGSNDDCY 688
+++W NA+ LYATPTGSNDD Y
Sbjct: 529 VDRWNNANVLYATPTGSNDDWY 550
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242064790|ref|XP_002453684.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor] gi|241933515|gb|EES06660.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 295/663 (44%), Positives = 395/663 (59%), Gaps = 71/663 (10%)
Query: 42 SSSPP---KRTPLLVFKAHVRNTQAKLSTTETEHETSTVTLRTRKGTASGASSLGTRDKR 98
SSSPP +R P+ H R+ L T +R G A R
Sbjct: 22 SSSPPIVTRRCPVPTLSCHGRDV---LDVMPNRDSRIPGTEESRAGPAGPPRGTNGPTVR 78
Query: 99 VDSAGEE------KDGKRLTKDNNSRKNFAFLKSR-EMSSGNSSLRSKDKKI----GIKS 147
D+ +E ++G R + + L+ R E S S R + G ++
Sbjct: 79 EDATAQEARTPLWREGSRGAPRTWRKGDRVVLQERVEWVSQERSWRRGLTRSLGSEGPRA 138
Query: 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRG 205
K RE + + ++ + G + G SKK K+ + ++ +LRVELDMCSKRG
Sbjct: 139 GKRWTREGNGMRAKE-SGKVGNSRDEGTGRRNASKKMKRSKGGEYAGKLRVELDMCSKRG 197
Query: 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265
DVMGAI LYD A EG++LGQ+HYNVLLYLCSSA++G V+PAKSG+
Sbjct: 198 DVMGAIALYDSAVEEGVRLGQHHYNVLLYLCSSASLGFVQPAKSGN-------------- 243
Query: 266 STELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS 325
++G +G S + L S + + D++ ++LG K +
Sbjct: 244 ----------TSSGIASFGPSQKLGPLPSGNLGGSEGDDASEGHVQDLG-------KNKA 286
Query: 326 QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--V 383
LL G S + I + +D ++YA RGFEI+EKMC ++ V
Sbjct: 287 SLLPGGSKAQ------------------TVSIPVGDDLREYACARGFEIFEKMCSEKERV 328
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
M+EA+LTA RMA+SMGD DMAF++VK+MK LG+ P+LRSYGPAL+ FCN G+V+KA
Sbjct: 329 QMSEAALTAKARMALSMGDSDMAFEIVKQMKDLGLKPKLRSYGPALTAFCNGGNVEKAFE 388
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
VE HMLE G+ PEE ELE LLR SV +GD+VYYL+HK RT+VR+VSPSTA++ WF
Sbjct: 389 VEAHMLESGITPEEAELETLLRASVVGRRGDKVYYLMHKFRTTVRQVSPSTAELFEVWFR 448
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
S A+++GK+KW+ I +EN GGGWHG GWLG+GKW V+ + + + +C CGEKLA
Sbjct: 449 SPTASKVGKRKWDTGAIVKAIENNGGGWHGFGWLGRGKWTVTRSNINKNGVCLACGEKLA 508
Query: 564 IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFK 623
IIDLDP ETE FA VA +AIKRERNS+F+ FQKWL +GPFEAVVDAANVGL+ R+
Sbjct: 509 IIDLDPKETEDFATFVAKLAIKRERNSNFENFQKWLKKHGPFEAVVDAANVGLFGHRHLS 568
Query: 624 PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683
++VNAV + IR +F S+KWPLIVLHN+ +TG M +P N L+EKWK A+++YATPTGS
Sbjct: 569 LSKVNAVADAIRLRFTSRKWPLIVLHNKHLTGEHMKKPGNHKLVEKWKQANSIYATPTGS 628
Query: 684 NDD 686
NDD
Sbjct: 629 NDD 631
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa] gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 509 bits (1312), Expect = e-141, Method: Compositional matrix adjust.
Identities = 248/330 (75%), Positives = 290/330 (87%), Gaps = 3/330 (0%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
SED KKYA QRG EI+EKMC ++VP+NEA+LTAV RMAMS+G+GD+AF+MVK+M +LGI
Sbjct: 62 FSEDVKKYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEMVKQMDALGI 121
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
NP+LRSYGPALSVFC++GD+DKA VE+HMLEHGVYPEEPEL+ALLRVSVE GKGD+VYY
Sbjct: 122 NPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYY 181
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
LLHKLR VR+VSPSTA +I +WFNSK A+R+GK KW+ +K+ +EN GGGWHG GWLG
Sbjct: 182 LLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGGGWHGQGWLG 238
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
KGKW VS T+VG D +CK CG+KL IDLD +ETEKFAESVASIAIKR+R+SSFQ+FQKW
Sbjct: 239 KGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRDSSFQRFQKW 298
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
LDYYGPFEAV+D AN G+Y+Q F P+++NAVVNGIRQK PSKKWPLIVLHN+RITG KM
Sbjct: 299 LDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKM 358
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDCY 688
D PVN+A IEKWKNADALYATPTGSNDD Y
Sbjct: 359 DGPVNKAFIEKWKNADALYATPTGSNDDWY 388
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1304), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/527 (49%), Positives = 342/527 (64%), Gaps = 55/527 (10%)
Query: 168 GQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225
G + G KK KK ++ +LRVELDMCSKRGDVMGAI LYD A EGIKLG
Sbjct: 111 GNSRDEGTGRRNACKKMKKPPDGEYAGKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLG 170
Query: 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS--TELGDSRDMDNNGQLDY 283
Q+HYNVLLYLCSSA++G V+PAKSG+ M S +G ++ +D +
Sbjct: 171 QHHYNVLLYLCSSASLGFVQPAKSGN------------MGSGIASIGPAQKLDPSPSRSL 218
Query: 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343
G S + S S + ++ +N G +K +
Sbjct: 219 GGSEGDNAYASESHVQ--------DQGKNKADLIPGGLKAQTV----------------- 253
Query: 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMG 401
I + ++ YA RGFEI++KMC ++ V M+EA+LTA RMA+SMG
Sbjct: 254 ------------SIPVEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMG 301
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
D DMAF++VK+MK LG+ P+LRSYGPAL+ FCN+G+V+KA VE HMLE G+ PEE ELE
Sbjct: 302 DSDMAFEIVKQMKGLGLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELE 361
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
LLR SV +GD+VYYLLHK RT+VR+VS STA++ WF S A+++GK+KW+ I
Sbjct: 362 TLLRASVVGRRGDKVYYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIA 421
Query: 522 DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVAS 581
+EN GGGWHG GWLG+GKW V+H+ + + +C CGEKLAIIDLDP ETE FA VA
Sbjct: 422 KAIENNGGGWHGFGWLGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAK 481
Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSK 641
+AIKRER S+F+ FQKWL+ +GPFEAVVDAANVGL+S ++ ++VN+V + IR +F SK
Sbjct: 482 LAIKRERKSNFENFQKWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSK 541
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCY 688
KWPLIVLHN+ + G +M + + L++KWK +++YATPTGSNDD Y
Sbjct: 542 KWPLIVLHNKHLIGERMKKLNDHKLVQKWKQENSIYATPTGSNDDWY 588
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 690 | ||||||
| TAIR|locus:2045432 | 572 | PRORP1 "proteinaceous RNase P | 0.476 | 0.575 | 0.477 | 9.7e-99 | |
| TAIR|locus:2059824 | 528 | PRORP2 "proteinaceous RNase P | 0.465 | 0.607 | 0.376 | 1.2e-67 | |
| TAIR|locus:2141662 | 576 | PRORP3 "AT4G21900" [Arabidopsi | 0.465 | 0.557 | 0.376 | 2.6e-65 | |
| TAIR|locus:2175178 | 156 | AT5G60430 [Arabidopsis thalian | 0.114 | 0.506 | 0.413 | 4.1e-12 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.453 | 0.496 | 0.229 | 4.7e-05 | |
| TAIR|locus:2065428 | 559 | AT2G01740 "AT2G01740" [Arabido | 0.173 | 0.214 | 0.258 | 0.00018 | |
| TAIR|locus:2197424 | 664 | EMB3103 "EMBRYO DEFECTIVE 3103 | 0.176 | 0.183 | 0.237 | 0.00052 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.168 | 0.192 | 0.25 | 0.0009 |
| TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 807 (289.1 bits), Expect = 9.7e-99, Sum P(2) = 9.7e-99
Identities = 157/329 (47%), Positives = 216/329 (65%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + +
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDCY 688
P NRAL+EKWKNA ALYATP GSNDD Y
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDWY 477
|
|
| TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 1.2e-67, Sum P(2) = 1.2e-67
Identities = 127/337 (37%), Positives = 193/337 (57%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G ++ PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T +I +WF ++A +G ++++ + N
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCY 688
R+ ++ P +R L+E+W + LYATP GSNDD Y
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDWY 424
|
|
| TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 561 (202.5 bits), Expect = 2.6e-65, Sum P(2) = 2.6e-65
Identities = 127/337 (37%), Positives = 190/337 (56%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G ++ PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T+ I +WF +A+ + L++ +
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NS-----SFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R+ NS F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCY 688
R+ ++ P +R L+E+W N + LYATP GSNDD Y
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDWY 483
|
|
| TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NSS-----FQKF 595
IV V C C E+LA +D + +ET+KF +S+ ++A++R+ NS F +F
Sbjct: 25 IVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEF 84
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
Q WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 85 QDWLEKHGDYEAIVDGANIGLY-QQNF 110
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 80/349 (22%), Positives = 154/349 (44%)
Query: 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCS----SAAVGVVKPAKSGSGMR 254
+C KRGD A L +K ++ ++ G YN ++ LC A+ + K ++ G+R
Sbjct: 231 LC-KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET-KGIR 288
Query: 255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
+ S++ S R D + L S MI++ + + F L F ++ L
Sbjct: 289 P-NVVTYSSLISCLCNYGRWSDASRLL----SDMIERKINPDVFTFSALIDAFVKEGKLV 343
Query: 315 QFSNGHMKLNSQLLDGR----SNLERG---PD--DQSRKK-DWSIDNQDADEI----RLS 360
+ + ++ + +D S+L G D D++++ ++ + ++ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 361 EDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+ KY + G E++ +M + N + + + GD DMA ++ K M S G+
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P + +Y L C NG ++KA V E++ + P ++ +AGK + + L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAA--RLGKKKWNESLIKDTMEN 526
L S++ V P DV+A +N+ + R G K+ ++L K+ E+
Sbjct: 524 FCNL--SLKGVKP---DVVA--YNTMISGFCRKGSKEEADALFKEMKED 565
|
|
| TAIR|locus:2065428 AT2G01740 "AT2G01740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 245 KKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDIT 304
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HKL
Sbjct: 305 AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
|
|
| TAIR|locus:2197424 EMB3103 "EMBRYO DEFECTIVE 3103" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
|
|
| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 29/116 (25%), Positives = 52/116 (44%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
++ G ++ KM ++ N + + + G + A +++K MK G+ P SY P
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
++ FC G +D A E M+ G P+ +L + GK D+ + KL
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 690 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G D A ++ + + I
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ GD D A S+ + M + GV P+E AL+ V+ AG D+ + +L R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 485 TS 486
Sbjct: 677 KQ 678
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 25/113 (22%), Positives = 48/113 (42%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
IY+ M V +E +A+ +A GD D AF++++ + GI SY +
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
N + KA + E + + P + AL+ E + + +L +++
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
|
Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
L +Y L GD D A +V E M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 690 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.71 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.61 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.45 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.43 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.42 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.2 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.07 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.94 | |
| PF11977 | 155 | RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai | 98.89 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.83 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.81 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.7 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.66 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.6 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.55 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.51 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.49 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.43 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.41 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.4 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.32 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.24 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.22 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.2 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.18 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.1 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.06 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.05 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.04 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.91 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.85 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.85 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.83 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.82 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.82 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.74 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.65 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.6 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.5 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.5 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.45 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.44 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.37 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.31 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.31 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.23 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.2 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.16 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.08 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.07 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.99 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.94 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.91 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.83 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.75 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 96.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.66 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.57 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.53 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.52 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.31 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.26 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.24 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.23 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.21 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.21 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.16 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.14 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.12 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.03 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 95.98 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 95.95 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.92 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 95.92 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 95.89 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 95.86 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 95.84 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 95.78 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.76 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 95.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.76 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.71 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.65 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 95.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.5 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.45 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 95.4 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.37 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 95.33 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.31 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.28 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.25 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 95.17 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.17 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 95.01 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 94.69 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 94.56 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.55 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.44 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 94.42 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.34 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 94.29 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 94.09 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 93.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 93.89 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 93.88 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 93.88 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 93.69 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 93.57 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.48 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 93.41 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 93.3 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 93.23 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 93.23 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 93.1 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.08 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 92.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 92.75 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 92.7 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 92.68 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.47 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 92.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 92.06 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 92.01 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 91.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 91.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 91.3 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 91.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 91.21 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 91.09 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 91.08 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 90.72 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 90.64 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 90.37 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 90.26 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 90.19 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 90.16 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 89.97 | |
| PLN02789 | 320 | farnesyltranstransferase | 89.91 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 89.8 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 89.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 89.33 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 89.14 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.12 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 88.96 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 88.12 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 87.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 87.34 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 87.13 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 86.6 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 86.6 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 86.33 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 85.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 84.96 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 84.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 84.73 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 84.5 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 84.37 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 84.24 | |
| KOG2297 | 412 | consensus Predicted translation factor, contains W | 84.02 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 83.22 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 83.16 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 82.86 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 82.66 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 82.57 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 82.44 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.98 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 81.57 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 81.41 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 81.21 | |
| PLN02789 | 320 | farnesyltranstransferase | 80.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.56 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 80.13 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=511.26 Aligned_cols=481 Identities=13% Similarity=0.117 Sum_probs=385.4
Q ss_pred hhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCC--------------------------CCCCcHHHHHHHHHHH
Q 005580 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSK--------------------------KDRSEQFQLRVELDMC 201 (690)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~--------------------------~~~p~~~tyn~lI~~~ 201 (690)
...++..+. .+.+.|+..+|.++|++|.+.|..+.. -..||..+||.+|.+|
T Consensus 370 ~~~~~~~y~--~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 370 SPEYIDAYN--RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred chHHHHHHH--HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 444555555 677889999999999999887754311 0138999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccch
Q 005580 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ 280 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~t 280 (690)
++.|+++.|+++|++|++.|+.||.++||+||++|+ ++|++++|.++|+ +|.+. |+. |.+|
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~----------k~G~vd~A~~vf~-------eM~~~-Gv~PdvvT 509 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA----------KSGKVDAMFEVFH-------EMVNA-GVEANVHT 509 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------hCcCHHHHHHHHH-------HHHHc-CCCCCHHH
Confidence 999999999999999999999999999999999999 9999999999995 88877 887 9999
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhh--cCCCCChhh
Q 005580 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRK--KDWSIDNQD 353 (690)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~--~g~~pd~~t 353 (690)
||+||++ |++.|++++|.++|++|.+.|+.||.+||+ .+|.+|| +.|..+|.+|.. .|+.||.++
T Consensus 510 ynaLI~g------y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn--sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 510 FGALIDG------CARAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred HHHHHHH------HHHCcCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 9999999 999999999999999999999999999999 9999999 567789999976 689999999
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 005580 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (690)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (690)
||+ ||++|++.|++++|.++|++|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+.|+.||.+||++||++|+
T Consensus 582 yna-LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGA-LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHH-HHHHHcchHHHHh
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARL 510 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a 510 (690)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|... ++.|+ +|++ |.++|+.+..
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--g~~PdvvtyN~LI~gy~k~G~~--- 735 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--KLRPTVSTMNALITALCEGNQL--- 735 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCH---
Confidence 99999999999999999999999999999999999999999999999999998 77777 8988 8888887764
Q ss_pred hcccchhhHHHHHhhhcCCccccccccCCCcceEEeeeecCCCcccccccce----------eecCCCHHHHHHHHHHHH
Q 005580 511 GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKL----------AIIDLDPIETEKFAESVA 580 (690)
Q Consensus 511 ~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~L----------~~~~l~~~e~~~l~~~i~ 580 (690)
++|++ +|.+|...|+.||.+|| +.++.++|+.+.... .++.++...+..++....
T Consensus 736 ----------eeAle----lf~eM~~~Gi~Pd~~Ty-~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~ 800 (1060)
T PLN03218 736 ----------PKALE----VLSEMKRLGLCPNTITY-SILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL 800 (1060)
T ss_pred ----------HHHHH----HHHHHHHcCCCCCHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 55556 88889999999999999 667777777765322 345555566666654321
Q ss_pred H----HHhh----------------hhcchhHHHHHHHHhhcCCcc-----EEEeccccccccCCCCChhHHHHHHHHHH
Q 005580 581 S----IAIK----------------RERNSSFQKFQKWLDYYGPFE-----AVVDAANVGLYSQRNFKPARVNAVVNGIR 635 (690)
Q Consensus 581 ~----~~~~----------------~~~~~~~~~F~~~l~~~~pyd-----~viDGaNvg~~~~~~~~~~~l~~vv~~l~ 635 (690)
+ .... .-....+..|++|++.+-.+| .|+.+.. ...+ ......+++.+
T Consensus 801 ~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~----~~~~--~~~~~~m~~~m- 873 (1060)
T PLN03218 801 RRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQ----LPHD--ATLRNRLIENL- 873 (1060)
T ss_pred HHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhc----cccc--HHHHHHHHHHh-
Confidence 1 0000 001246778888888775444 4443221 1111 12222222222
Q ss_pred hhCCCCCccEEEecccccCCCCCCChhHHHHHHHHHhCCceecCCCCCCCCcCC
Q 005580 636 QKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDCYK 689 (690)
Q Consensus 636 ~~~~~~~~~lvvL~~~~~~~~~~~~~~~~~l~~~w~~~~~ly~tp~~snDD~yw 689 (690)
...+..|-....+.++.+.....+++..+++++...|. .|+.+.+++-|
T Consensus 874 --~~~~~~~~~~~y~~Li~g~~~~~~~A~~l~~em~~~Gi---~p~~~~~~~~~ 922 (1060)
T PLN03218 874 --GISADSQKQSNLSTLVDGFGEYDPRAFSLLEEAASLGV---VPSVSFKKSPI 922 (1060)
T ss_pred --ccCCCCcchhhhHHHHHhhccChHHHHHHHHHHHHcCC---CCCcccccCce
Confidence 11223333333444444322123567788888888884 46665444444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-54 Score=509.22 Aligned_cols=418 Identities=12% Similarity=0.132 Sum_probs=286.6
Q ss_pred cccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005580 144 GIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK 223 (690)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~ 223 (690)
..+...+||..+. .+++.++.++|.++|++|.+. |+.||.++||+||++|++.|++++|+++|++|+..|+.
T Consensus 468 l~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~------Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 468 LKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNA------GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred CCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 3444455555555 555555555666666665333 34555577777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccccc-CCCC-ccchhhccccccccccccccCCChh
Q 005580 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPMIDKLESNSSYRFD 301 (690)
Q Consensus 224 pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~-~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~ 301 (690)
||.+|||+||.+|+ +.|++++|.++|. +|... .|+. |.++||+||++ |++.|+++
T Consensus 540 PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTynaLI~a------y~k~G~ld 596 (1060)
T PLN03218 540 PDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGALMKA------CANAGQVD 596 (1060)
T ss_pred CCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHHHHHH------HHHCCCHH
Confidence 77777777777777 6777777777773 56532 2555 66777777777 77777777
Q ss_pred hHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHH
Q 005580 302 DLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (690)
Q Consensus 302 ~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (690)
+|.++|++|.+.|+.|+.++|+ .+|.+|| ++|..+|.+|...|+.||.++|++ ||++|++.|++++|.++|+
T Consensus 597 eA~elf~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns-LI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-LVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHH
Confidence 7777777777777777777777 7777777 455667777777777777777777 7777777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 005580 377 KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (690)
Q Consensus 377 ~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd 456 (690)
+|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHcchHHHHhhcc-----cchh-------hHHHH
Q 005580 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKK-----KWNE-------SLIKD 522 (690)
Q Consensus 457 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~-----~~~~-------~~v~e 522 (690)
..||++||.+|++.|++++|.++|.+|.+. |+.|+ +|+.|.++|.. ...+++.. .|+. .-..+
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tynsLIglc~~-~y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRCITGLCLR-RFEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHH-HHHHHhhhhhhhhhhhccccccccchHHH
Confidence 777777777777777777777777777777 55555 67765566542 12222211 1111 12356
Q ss_pred HhhhcCCccccccccCCCcceEEeeeecCCCccccccccee-----ecCCC-----HHHHHHHHHHHHHHHhhhhcchhH
Q 005580 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA-----IIDLD-----PIETEKFAESVASIAIKRERNSSF 592 (690)
Q Consensus 523 a~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~L~-----~~~l~-----~~e~~~l~~~i~~~~~~~~~~~~~ 592 (690)
|+. +|++|...|+.||.+||. .++.++|..++..+. .+... ...|..+++.+.+ ...++|
T Consensus 831 Al~----lf~eM~~~Gi~Pd~~T~~-~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~-----~~~~A~ 900 (1060)
T PLN03218 831 ALM----VYRETISAGTLPTMEVLS-QVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE-----YDPRAF 900 (1060)
T ss_pred HHH----HHHHHHHCCCCCCHHHHH-HHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc-----ChHHHH
Confidence 777 999999999999999994 444777766654321 11111 1244555554321 124689
Q ss_pred HHHHHHHhhcCCccEE
Q 005580 593 QKFQKWLDYYGPFEAV 608 (690)
Q Consensus 593 ~~F~~~l~~~~pyd~v 608 (690)
..|++++..+..+++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 9999999888655554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=464.32 Aligned_cols=348 Identities=11% Similarity=0.058 Sum_probs=269.5
Q ss_pred hhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 005580 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY 227 (690)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~ 227 (690)
..++|..+. .+.+.++..+|.++|++|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..
T Consensus 87 ~~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 345666666 7778999999999999995432 356788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHH
Q 005580 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (690)
Q Consensus 228 tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf 307 (690)
+||.||++|+ ++|++++|.++|+ +|.+ +|+++||+||++ |++.|++++|.++|
T Consensus 160 ~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~----~~~~t~n~li~~------~~~~g~~~~A~~lf 212 (697)
T PLN03081 160 MMNRVLLMHV----------KCGMLIDARRLFD-------EMPE----RNLASWGTIIGG------LVDAGNYREAFALF 212 (697)
T ss_pred HHHHHHHHHh----------cCCCHHHHHHHHh-------cCCC----CCeeeHHHHHHH------HHHCcCHHHHHHHH
Confidence 9999999999 9999999999995 5654 389999999999 99999999999999
Q ss_pred HHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC
Q 005580 308 NEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (690)
Q Consensus 308 ~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (690)
++|.+.|+.||..||+ .++.+++ ..+..++..+.+.|+.||..+||+ ||++|++.|++++|.++|++|..
T Consensus 213 ~~M~~~g~~p~~~t~~--~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~-- 287 (697)
T PLN03081 213 REMWEDGSDAEPRTFV--VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPE-- 287 (697)
T ss_pred HHHHHhCCCCChhhHH--HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH-HHHHHHHCCCHHHHHHHHHhCCC--
Confidence 9999999999999998 7777766 334456666777777777777777 77777777777777777777753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 005580 383 VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (690)
Q Consensus 383 ~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (690)
+|++|||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||+
T Consensus 288 --~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~ 365 (697)
T PLN03081 288 --KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365 (697)
T ss_pred --CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHH
Confidence 577777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHcchHHHHhhcccchhhHHHHHhhhcCCccccccccCCCc
Q 005580 463 LLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGK 541 (690)
Q Consensus 463 Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p 541 (690)
||++|+++|++++|.++|++|.+. ...+|++ |.++++.|.. ++|++ +|++|...|+.|
T Consensus 366 Li~~y~k~G~~~~A~~vf~~m~~~----d~~t~n~lI~~y~~~G~~-------------~~A~~----lf~~M~~~g~~P 424 (697)
T PLN03081 366 LVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRG-------------TKAVE----MFERMIAEGVAP 424 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHcCCH-------------HHHHH----HHHHHHHhCCCC
Confidence 777777777777777777776532 2236666 6666666654 33334 666666666666
Q ss_pred ceEEeeeecCCCccccc
Q 005580 542 WIVSHTTVGGDALCKCC 558 (690)
Q Consensus 542 ~~vt~t~vl~~g~C~~c 558 (690)
|.+|| +.++.+.|..+
T Consensus 425 d~~T~-~~ll~a~~~~g 440 (697)
T PLN03081 425 NHVTF-LAVLSACRYSG 440 (697)
T ss_pred CHHHH-HHHHHHHhcCC
Confidence 66666 44445444444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=479.54 Aligned_cols=415 Identities=12% Similarity=0.020 Sum_probs=329.8
Q ss_pred chhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005580 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (690)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~ 226 (690)
...+||..+. .+.+.++.++|.++|++|... |+.||.+||+++|++|++.+++..+.+++..|.+.|+.||.
T Consensus 151 d~~~~n~li~--~~~~~g~~~~A~~~f~~M~~~------g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 222 (857)
T PLN03077 151 DLFSWNVLVG--GYAKAGYFDEALCLYHRMLWA------GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDV 222 (857)
T ss_pred CeeEHHHHHH--HHHhCCCHHHHHHHHHHHHHc------CCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCccc
Confidence 4445666555 566666666666666666443 34444466666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHH
Q 005580 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (690)
Q Consensus 227 ~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (690)
.+||+||.+|+ ++|++++|..+|+ +|... |.++||+||.+ |++.|++++|.++
T Consensus 223 ~~~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~~----d~~s~n~li~~------~~~~g~~~eAl~l 275 (857)
T PLN03077 223 DVVNALITMYV----------KCGDVVSARLVFD-------RMPRR----DCISWNAMISG------YFENGECLEGLEL 275 (857)
T ss_pred chHhHHHHHHh----------cCCCHHHHHHHHh-------cCCCC----CcchhHHHHHH------HHhCCCHHHHHHH
Confidence 66777777777 9999999999996 55432 88999999999 9999999999999
Q ss_pred HHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC
Q 005580 307 FNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (690)
Q Consensus 307 f~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (690)
|++|.+.|+.||.+||+ .++.+++ +.+..++..|...|+.||+.+||+ ||++|++.|++++|.++|++|.
T Consensus 276 f~~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~-- 350 (857)
T PLN03077 276 FFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS-LIQMYLSLGSWGEAEKVFSRME-- 350 (857)
T ss_pred HHHHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH-HHHHHHhcCCHHHHHHHHhhCC--
Confidence 99999999999999999 9999998 456779999999999999999999 9999999999999999999997
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 005580 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (690)
Q Consensus 382 g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (690)
.||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.++++.|.+.|+.||..+||
T Consensus 351 --~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n 428 (857)
T PLN03077 351 --TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVAN 428 (857)
T ss_pred --CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHH
Confidence 489999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHcchHHHHhhccc-------------c--------hhhH
Q 005580 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKK-------------W--------NESL 519 (690)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~-------------~--------~~~~ 519 (690)
+||++|++.|++++|.++|++|.+. ...+|+. |.+++..+...+|...- + ..+.
T Consensus 429 ~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~ 504 (857)
T PLN03077 429 ALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGA 504 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhch
Confidence 9999999999999999999999754 2337877 88888877765554210 0 1123
Q ss_pred HHHHhhhcCCccccccccCCCcceEEeeeecCCCcccccccceeecCC--CHHHHHHHHHHHHHHHhhhhcchhHHHHHH
Q 005580 520 IKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDL--DPIETEKFAESVASIAIKRERNSSFQKFQK 597 (690)
Q Consensus 520 v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~L~~~~l--~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~ 597 (690)
++++.+ ++..|...|+.|+..++ +.+++++|+++....+...+ .+.+...|...|..++..+...+.++.|++
T Consensus 505 l~~~~~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~ 579 (857)
T PLN03077 505 LMCGKE----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR 579 (857)
T ss_pred HHHhHH----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333333 55666677777777777 77778888777533211100 022334556666777788888888999999
Q ss_pred HHhhcCCccEEEecc
Q 005580 598 WLDYYGPFEAVVDAA 612 (690)
Q Consensus 598 ~l~~~~pyd~viDGa 612 (690)
|.+.+..+|.+.-..
T Consensus 580 M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 580 MVESGVNPDEVTFIS 594 (857)
T ss_pred HHHcCCCCCcccHHH
Confidence 998876666555433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-49 Score=463.23 Aligned_cols=346 Identities=12% Similarity=0.032 Sum_probs=225.1
Q ss_pred ccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005580 145 IKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (690)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p 224 (690)
.+...++|..+. .+.+.++.++|.++|++|. .||+++||++|.+|++.|++++|+++|++|.+.|+.|
T Consensus 155 ~~~~~~~n~Li~--~y~k~g~~~~A~~lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p 222 (697)
T PLN03081 155 EPDQYMMNRVLL--MHVKCGMLIDARRLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222 (697)
T ss_pred CcchHHHHHHHH--HHhcCCCHHHHHHHHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCC
Confidence 345556666665 6667777777777777771 2455777777777777777777777777777777777
Q ss_pred CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhH
Q 005580 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (690)
Q Consensus 225 d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A 303 (690)
|..||+++|.+|+ +.|..+.+..++. .+.+. |+. |.++||+||++ |++.|++++|
T Consensus 223 ~~~t~~~ll~a~~----------~~~~~~~~~~l~~-------~~~~~-g~~~d~~~~n~Li~~------y~k~g~~~~A 278 (697)
T PLN03081 223 EPRTFVVMLRASA----------GLGSARAGQQLHC-------CVLKT-GVVGDTFVSCALIDM------YSKCGDIEDA 278 (697)
T ss_pred ChhhHHHHHHHHh----------cCCcHHHHHHHHH-------HHHHh-CCCccceeHHHHHHH------HHHCCCHHHH
Confidence 7777777777777 5666666666663 33333 555 66667777777 7777777777
Q ss_pred HHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHH
Q 005580 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (690)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M 378 (690)
.++|++|. .||.++|| .+|.||+ ++|..+|.+|...|+.||.+||++ +|.+|++.|++++|.+++.+|
T Consensus 279 ~~vf~~m~----~~~~vt~n--~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~-ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 279 RCVFDGMP----EKTTVAWN--SMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSI-MIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHhCC----CCChhHHH--HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhccchHHHHHHHHHH
Confidence 77776664 35666666 6666666 345556666666667777777766 667777777777777777777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 005580 379 CLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (690)
Q Consensus 379 ~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ 458 (690)
.+.|+.||..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 766666777777777777777777777777776664 2566677777777777777777777777776667777777
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHH-HHHHHcchHHHHhhcccchhhHHHHHhhhcCCcccccc
Q 005580 459 ELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLG 535 (690)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~ 535 (690)
||+++|.+|++.|.+++|.++|+.|.+. .++.|+ +|+. |..+++.|... +|.+ ++++|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~-~g~~p~~~~y~~li~~l~r~G~~~-------------eA~~----~~~~~- 488 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSEN-HRIKPRAMHYACMIELLGREGLLD-------------EAYA----MIRRA- 488 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHh-cCCCCCccchHhHHHHHHhcCCHH-------------HHHH----HHHHC-
Confidence 7777777777777777777777776542 144454 5655 55665555433 3333 44333
Q ss_pred ccCCCcceEEeeeecCCCcccccc
Q 005580 536 WLGKGKWIVSHTTVGGDALCKCCG 559 (690)
Q Consensus 536 ~~g~~p~~vt~t~vl~~g~C~~c~ 559 (690)
++.|+.++| +.++.+.|..+.
T Consensus 489 --~~~p~~~~~-~~Ll~a~~~~g~ 509 (697)
T PLN03081 489 --PFKPTVNMW-AALLTACRIHKN 509 (697)
T ss_pred --CCCCCHHHH-HHHHHHHHHcCC
Confidence 356666666 555555555444
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-49 Score=471.93 Aligned_cols=474 Identities=11% Similarity=0.011 Sum_probs=371.8
Q ss_pred hhccCcccccCCccCCcCCccccccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHH
Q 005580 122 AFLKSREMSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC 201 (690)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~ 201 (690)
.+++.|.+..+...+..+ ..+...+||..+. .+.+.++.++|.++|++|.+.| +.||.+||+++|.+|
T Consensus 231 ~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~ 298 (857)
T PLN03077 231 MYVKCGDVVSARLVFDRM----PRRDCISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISAC 298 (857)
T ss_pred HHhcCCCHHHHHHHHhcC----CCCCcchhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHH
Confidence 344445544444443332 2345567888887 7888999999999999996654 455559999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchh
Q 005580 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~ty 281 (690)
++.|+++.|.+++..|.+.|+.||..+||+||.+|+ ++|++++|.++|+ +|.. +|.++|
T Consensus 299 ~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~----~d~~s~ 357 (857)
T PLN03077 299 ELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL----------SLGSWGEAEKVFS-------RMET----KDAVSW 357 (857)
T ss_pred HhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH----------hcCCHHHHHHHHh-------hCCC----CCeeeH
Confidence 999999999999999999999999999999999999 9999999999995 5543 388999
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcCCCCChhhhHH
Q 005580 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADE 356 (690)
Q Consensus 282 n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~ 356 (690)
|+||.+ |++.|++++|.++|++|.+.|+.||.+||+ .++.+++ +.+..++..|.+.|+.||..+||+
T Consensus 358 n~li~~------~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 358 TAMISG------YEKNGLPDKALETYALMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred HHHHHH------HHhCCCHHHHHHHHHHHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 999999 999999999999999999999999999999 9999988 566779999999999999999999
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 005580 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g 436 (690)
||++|++.|++++|.++|++|.+ ||.++||+||.+|++.|+.++|+++|++|.. ++.||.+||+++|.+|++.|
T Consensus 430 -Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g 503 (857)
T PLN03077 430 -LIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIG 503 (857)
T ss_pred -HHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhc
Confidence 99999999999999999999975 6889999999999999999999999999986 59999999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHcchHHHHhhcccc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKW 515 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~~ 515 (690)
+++.+.+++..|.+.|+.||..++|+||++|+++|++++|.++|++| . ++..+|++ |.++++.|..
T Consensus 504 ~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~---~d~~s~n~lI~~~~~~G~~-------- 570 (857)
T PLN03077 504 ALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--E---KDVVSWNILLTGYVAHGKG-------- 570 (857)
T ss_pred hHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--C---CChhhHHHHHHHHHHcCCH--------
Confidence 99999999999999999999999999999999999999999999987 2 23448888 8888777764
Q ss_pred hhhHHHHHhhhcCCccccccccCCCcceEEeeeecCCCcccccccc-----------eeecCCCHHHHHHHHHHHHHHHh
Q 005580 516 NESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEK-----------LAIIDLDPIETEKFAESVASIAI 584 (690)
Q Consensus 516 ~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c~~~-----------L~~~~l~~~e~~~l~~~i~~~~~ 584 (690)
++|++ +|++|...|+.||.+|| +.++.+.|..+... ...+.++.+.|..+++.+.+.+.
T Consensus 571 -----~~A~~----lf~~M~~~g~~Pd~~T~-~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 571 -----SMAVE----LFNRMVESGVNPDEVTF-ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred -----HHHHH----HHHHHHHcCCCCCcccH-HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 45556 89999999999999999 66666655555321 12344555677777777766555
Q ss_pred hhhcchhHHHHHHHHhhcCCccEEEeccccccccCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChhHH
Q 005580 585 KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664 (690)
Q Consensus 585 ~~~~~~~~~~F~~~l~~~~pyd~viDGaNvg~~~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~ 664 (690)
..++ .+.|++| ...+|.+++++-++.|..++ +.+.-+.+.+.+.+..|..-...++|.+-+.. ..+..++.
T Consensus 641 ~~eA---~~~~~~m---~~~pd~~~~~aLl~ac~~~~-~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~--~g~~~~a~ 711 (857)
T PLN03077 641 LTEA---YNFINKM---PITPDPAVWGALLNACRIHR-HVELGELAAQHIFELDPNSVGYYILLCNLYAD--AGKWDEVA 711 (857)
T ss_pred HHHH---HHHHHHC---CCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHH--CCChHHHH
Confidence 4443 3333333 13577778877766554332 33333445555555444333334444443332 22355666
Q ss_pred HHHHHHHhCC
Q 005580 665 ALIEKWKNAD 674 (690)
Q Consensus 665 ~l~~~w~~~~ 674 (690)
++.+.+++.|
T Consensus 712 ~vr~~M~~~g 721 (857)
T PLN03077 712 RVRKTMRENG 721 (857)
T ss_pred HHHHHHHHcC
Confidence 6666666665
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-15 Score=165.35 Aligned_cols=276 Identities=15% Similarity=0.042 Sum_probs=211.5
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd---~~tyn~Ll~~~~~ 238 (690)
..++.++|...|.++.+.. +.+..+|..+...+.+.|++++|+.+++.+...+-.++ ...+..|...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 5578889999999996532 12346899999999999999999999999987643322 356788888888
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (690)
+.|+.++|..+|. ++.+. ...+..+++.++.. +++.|++++|.++|+.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55442 22266779999999 9999999999999999987653222
Q ss_pred ccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (690)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~ 398 (690)
.... ...|.. +...+.+.|++++|...|+++.+.. +.+...+..+...|.
T Consensus 176 ~~~~----------------------------~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 176 RVEI----------------------------AHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred hHHH----------------------------HHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 1100 011223 6667888999999999999988753 234567888889999
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHH
Q 005580 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (690)
+.|++++|.++|+++...+-.....+++.++.+|++.|+.++|...++++.+. .|+...+..+...+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999887642222467888999999999999999999998875 4777777889999999999999999
Q ss_pred HHHHHHHcCCCCChhHHHH-HHHHH
Q 005580 479 LLHKLRTSVRKVSPSTADV-IAKWF 502 (690)
Q Consensus 479 ll~~M~~~~~g~~p~t~~~-I~~~~ 502 (690)
+|+++.+. .+...++.. +..++
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhh
Confidence 99998877 444445554 44443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-14 Score=153.33 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=213.8
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~ 238 (690)
.....++.++|..+++.+...+ ..........+..+...|.+.|++++|+.+|+++.+. -+++..+++.+...+.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~- 152 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQ- 152 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH-
Confidence 3457889999999999996532 1100112357889999999999999999999999865 3456789999999999
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc-c----chhhccccccccccccccCCChhhHHHHHHHHHHc
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-N----GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d-~----~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (690)
+.|++++|.+.+. .+... +-.+ . ..|..+... +.+.|++++|...|+++.+.
T Consensus 153 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 153 ---------QEKDWQKAIDVAE-------RLEKL-GGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred ---------HhchHHHHHHHHH-------HHHHh-cCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 8899999999995 44432 2111 1 124556666 88899999999999999865
Q ss_pred CCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005580 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (690)
Q Consensus 314 g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~L 393 (690)
. |+.. ..+.. +...|.+.|++++|.++|+++...+......+++.+
T Consensus 210 ~--p~~~-------------------------------~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 210 D--PQCV-------------------------------RASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred C--cCCH-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 2 3321 12223 778899999999999999999976433335678999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---c
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---A 470 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~ 470 (690)
+.+|++.|++++|.+.++.+.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++. .
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999999999876 478888899999999999999999999998875 6999999999999886 5
Q ss_pred CChHHHHHHHHHHHHcCCCCChh
Q 005580 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
|+.+++..+|++|.++...+.|+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999984445554
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.4e-11 Score=146.03 Aligned_cols=283 Identities=12% Similarity=-0.014 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
..|..+..++.+.|++++|+..|+++.... +.+...+..+...+. +.|+.++|...|. ++..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 444455555555555555555555544322 123334444444444 4455555555553 2222
Q ss_pred cCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcC
Q 005580 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (690)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g 346 (690)
. .-.+..+|..+... +...|++++|..+++.|.+... ++...+. .+...+. ..|...+..+...
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~- 732 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKR- 732 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 1 11134445555555 6666666666666666655431 1222222 2222221 3344444444443
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHH
Q 005580 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (690)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (690)
.|+..++.. +...+.+.|+.++|.+.++++.+.. +.+...++.+...|.+.|+.++|.++|+++.+.. .++..+++
T Consensus 733 -~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 733 -APSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred -CCCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 233344444 5666667777777777777666543 3456666777777777777777777777766553 34556667
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHH-HHHHHHHcc
Q 005580 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVIAKWFNS 504 (690)
Q Consensus 427 ~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~-~~I~~~~~~ 504 (690)
.+...+.+.|+ .+|..+++.+.+.. .-+..++..+...+...|++++|..+|+++.+. ++ .|.++ +....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 77777777777 66777777665542 124445556666677777777777777777776 33 33344 336666666
Q ss_pred hHHHHhh
Q 005580 505 KEAARLG 511 (690)
Q Consensus 505 ~~~~~a~ 511 (690)
|+..+|.
T Consensus 885 g~~~~A~ 891 (899)
T TIGR02917 885 GRKAEAR 891 (899)
T ss_pred CCHHHHH
Confidence 6554443
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.1e-13 Score=103.03 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=23.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 005580 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (690)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (690)
||++|||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4444444444444444444444444444444444444444444444444
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-11 Score=143.25 Aligned_cols=262 Identities=10% Similarity=-0.046 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
.+|+.+...+.+.|++++|.+.|+++.... +.+...+..+...+. ..|+.++|...|. ++..
T Consensus 466 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-------~~~~ 527 (899)
T TIGR02917 466 SLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDI----------QEGNPDDAIQRFE-------KVLT 527 (899)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHH
Confidence 344445555555555555555555544321 122333333444444 4455555555552 2222
Q ss_pred cCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc-----cccCCCchhhhhcC
Q 005580 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (690)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g 346 (690)
. ...+..+++.+... +.+.|+.++|..+|.++....- .+...+. .+...+. ..|..++..+...
T Consensus 528 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~- 596 (899)
T TIGR02917 528 I-DPKNLRAILALAGL------YLRTGNEEEAVAWLEKAAELNP-QEIEPAL--ALAQYYLGKGQLKKALAILNEAADA- 596 (899)
T ss_pred h-CcCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhCc-cchhHHH--HHHHHHHHCCCHHHHHHHHHHHHHc-
Confidence 1 11133344444444 5555555555555555544321 1111111 2222222 2233333333321
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHH
Q 005580 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (690)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (690)
...+...|.. +...|.+.|++++|...|+++.+.. +.+...+..+...|.+.|++++|..+++.+.+.. ..+..++.
T Consensus 597 ~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 673 (899)
T TIGR02917 597 APDSPEAWLM-LGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQI 673 (899)
T ss_pred CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHH
Confidence 1223334444 5555555566666666666555432 1234455555555556666666666665555431 22345555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 427 ~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+...++..|+.++|.++++.+.+.+ .++...+..+...+.+.|++++|...|+++...
T Consensus 674 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 732 (899)
T TIGR02917 674 GLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR 732 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Confidence 55556666666666666666655543 234455555555566666666666666666555
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.2e-13 Score=100.83 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005580 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (690)
Q Consensus 189 p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~ 237 (690)
||+++||++|++|++.|++++|+++|++|++.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999999999999999999999999999999998
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-11 Score=123.89 Aligned_cols=290 Identities=13% Similarity=0.058 Sum_probs=220.4
Q ss_pred CCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC---------Cc----------cc
Q 005580 187 DRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG---------VV----------KP 246 (690)
Q Consensus 187 ~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~---------~~----------~~ 246 (690)
..|+ +.+=|.|+.. ...|.+.++.-+|+.|+..|+..+...--.|+..-|-.... .+ .-
T Consensus 111 ~~~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~s 189 (625)
T KOG4422|consen 111 ADPLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSS 189 (625)
T ss_pred CCchhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccc
Confidence 3454 3455666654 56799999999999999999998888888887766532110 00 01
Q ss_pred CCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchh
Q 005580 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS 325 (690)
Q Consensus 247 ~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~ 325 (690)
=|.|.+.+ -+|. -.+ ..-||.+||.| +|+--..+.|.++++|-.....+-+..+||
T Consensus 190 WK~G~vAd--L~~E-------------~~PKT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN-- 246 (625)
T KOG4422|consen 190 WKSGAVAD--LLFE-------------TLPKTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN-- 246 (625)
T ss_pred cccccHHH--HHHh-------------hcCCCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--
Confidence 13343333 3332 222 56789999999 999999999999999999998999999999
Q ss_pred hhhhccc-cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 005580 326 QLLDGRS-NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (690)
Q Consensus 326 ~li~g~~-~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~ 400 (690)
.+|.+-. ...+.+..+|....+.||..|+|+ ++.+..+.|+++. |.+++.+|++-|+.|...+|--+|.-+++.
T Consensus 247 ~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re 325 (625)
T KOG4422|consen 247 GLIGASSYSVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRE 325 (625)
T ss_pred hhhhHHHhhccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhccc
Confidence 8887766 556789999999999999999999 9999999997764 568899999999999999999999999999
Q ss_pred CChHH-HHHHHHHHHH----CCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC---HHHHHHHH
Q 005580 401 GDGDM-AFDMVKRMKS----LGINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE---EPELEALL 464 (690)
Q Consensus 401 g~~~~-A~~l~~~M~~----~g~~P----d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~----gv~pd---~~ty~~Li 464 (690)
++..+ |..++.++.. +-++| |..-|.+.++.|.+..+.+.|.++..-.... -+.|+ ..-|.-+.
T Consensus 326 ~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~ 405 (625)
T KOG4422|consen 326 SDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFF 405 (625)
T ss_pred CCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHH
Confidence 88854 4444444442 33444 4456788899999999999999998776543 13333 23467788
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005580 465 RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (690)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~ 501 (690)
...|.....+.-+..++.|.-+..+|.+-+...|...
T Consensus 406 ~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 406 DLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 8889999999999999999988666666555443333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.3e-09 Score=110.21 Aligned_cols=231 Identities=10% Similarity=0.015 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
-||.+||.++||--..+.|.++|.+-.....+.+..+||.||.+-+ +....++. .||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------------~~~~K~Lv-------~EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------------YSVGKKLV-------AEMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------------hhccHHHH-------HHHHH
Confidence 7999999999999999999999999998888999999999998866 22335566 37777
Q ss_pred cCCCC-ccchhhccccccccccccccCCChhhH----HHHHHHHHHcCCCCCccccchhhhhhccccccCC---------
Q 005580 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG--------- 337 (690)
Q Consensus 272 ~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A----~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~--------- 337 (690)
. .+. |..|+|+++.. ..+.|+++.| .+++.||++.|+.|...+|. .+|.-+|.+...
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhcccCCchhhhHHHHH
Confidence 6 666 99999999999 9999988664 67889999999999999998 788877733221
Q ss_pred -CchhhhhcCCCCChhhhHHH---HHHHHHhccCHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHhcCChHHH
Q 005580 338 -PDDQSRKKDWSIDNQDADEI---RLSEDAKKYAFQRGFEIYEKMCLD----EVPMNE---ASLTAVGRMAMSMGDGDMA 406 (690)
Q Consensus 338 -~~~~m~~~g~~pd~~tyn~~---lI~~~~k~g~~~~A~~lf~~M~~~----g~~pd~---~tyn~LI~~~~~~g~~~~A 406 (690)
+.+++..+.++|-..+.|-. -++-|.+..+.+-|.++..-++.. -+.|+. +=|.-+....|.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555544433332 344555666666666665554421 122332 2345566666777777777
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005580 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (690)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g 452 (690)
...++.|.-.-+-|+..+-..++.+.--.|.++-.-++|.+|...|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 7777777666566666777777777766777766666666665554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.4e-10 Score=123.40 Aligned_cols=254 Identities=14% Similarity=0.062 Sum_probs=163.6
Q ss_pred HHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC
Q 005580 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (690)
Q Consensus 171 ~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g 250 (690)
.++-.|...|+.|++ +||..+|.-||..|+.+.|- +|.-|+-...+.+...|+.++.+.. .++
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 455667777777777 99999999999999999999 9999998888889999999999887 444
Q ss_pred chhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHH-------cCCCCCccccc
Q 005580 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN-------LGQFSNGHMKL 323 (690)
Q Consensus 251 ~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~-------~g~~Pd~~ty~ 323 (690)
+.+.+.+. -.-||+.|+.+ |...|++.--..+=+.|.. .|+-.-..-+-
T Consensus 74 d~Enpkep------------------~aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEP------------------LADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCC------------------chhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 44433322 23579999999 9999987552222122322 11110000000
Q ss_pred hhhhhhccc---ccc---------CCCchhhhhcCC-CCChhhhHHHHHHHHHhcc-CHHHHHHHHHHHHhCCC-CCCHH
Q 005580 324 NSQLLDGRS---NLE---------RGPDDQSRKKDW-SIDNQDADEIRLSEDAKKY-AFQRGFEIYEKMCLDEV-PMNEA 388 (690)
Q Consensus 324 ~~~li~g~~---~~a---------~~~~~~m~~~g~-~pd~~tyn~~lI~~~~k~g-~~~~A~~lf~~M~~~g~-~pd~~ 388 (690)
..++++- ..+ +.+++...+.+. .|-..-++...+ .+-++- ......++.+ |.+.+. .|+..
T Consensus 130 --~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v-fLrqnv~~ntpvekLl~-~cksl~e~~~s~ 205 (1088)
T KOG4318|consen 130 --MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV-FLRQNVVDNTPVEKLLN-MCKSLVEAPTSE 205 (1088)
T ss_pred --hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH-HHHHhccCCchHHHHHH-HHHHhhcCCChH
Confidence 0111110 000 111222222211 111111111011 000110 1112222222 233322 59999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (690)
+|.+++++-..+|+++.|..++.+|++.|+..+..-|-+||-+ .++...+..+..-|.+.|+.|+..||.-.+..+.
T Consensus 206 ~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l 282 (1088)
T KOG4318|consen 206 TLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQL 282 (1088)
T ss_pred HHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhh
Confidence 9999999999999999999999999999999899888998877 8889999999999999999999999998887776
Q ss_pred HcCC
Q 005580 469 EAGK 472 (690)
Q Consensus 469 ~~g~ 472 (690)
++|.
T Consensus 283 ~N~~ 286 (1088)
T KOG4318|consen 283 SNGQ 286 (1088)
T ss_pred cchh
Confidence 6554
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.7e-07 Score=106.56 Aligned_cols=290 Identities=9% Similarity=-0.098 Sum_probs=180.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
....|+..+|..+++........ .|+ ..| .+..++...|++++|++.|+++.... +-+...+..+-..+.
T Consensus 52 ~~~~g~~~~A~~l~~~~l~~~p~-----~~~-~l~-~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~-- 121 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRVLTAKN-----GRD-LLR-RWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLL-- 121 (656)
T ss_pred HHhcCCcchhHHHhHHHHHhCCC-----chh-HHH-HHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH--
Confidence 34778888899988887554221 122 334 44455566888888988888887642 223445555556666
Q ss_pred ccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCc
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (690)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+..
T Consensus 122 --------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~~~ 179 (656)
T PRK15174 122 --------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPRGD 179 (656)
T ss_pred --------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCCHH
Confidence 6788888888885 33321 11144557777777 88888888888888877654322211
Q ss_pred cccch-hhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 320 HMKLN-SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (690)
Q Consensus 320 ~ty~~-~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~ 398 (690)
..+.. ..+..|-..+|...+..+....-.++...+.. +...+.+.|+.++|...|++..... +-+...+..+-..|.
T Consensus 180 a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~ 257 (656)
T PRK15174 180 MIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYY 257 (656)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 11110 00111111334444444433221122222222 4567778888888888888877654 234666777778888
Q ss_pred hcCChHH----HHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 399 SMGDGDM----AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 399 ~~g~~~~----A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
..|++++ |...|+...+. .| +...+..+-..+.+.|+.++|...+++..+.. .-+...+..+-..|.+.|++
T Consensus 258 ~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~ 334 (656)
T PRK15174 258 QSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQY 334 (656)
T ss_pred HcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 8888775 67777776654 34 34567777778888888888888888877643 12344566677777888888
Q ss_pred HHHHHHHHHHHHc
Q 005580 474 DRVYYLLHKLRTS 486 (690)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (690)
++|...|+++...
T Consensus 335 ~eA~~~l~~al~~ 347 (656)
T PRK15174 335 TAASDEFVQLARE 347 (656)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887766
|
|
| >PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes [] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-10 Score=108.02 Aligned_cols=82 Identities=23% Similarity=0.320 Sum_probs=64.0
Q ss_pred cEEEeccccccc--cCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChhHHHHHHHHHhCCceecCCCCC
Q 005580 606 EAVVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683 (690)
Q Consensus 606 d~viDGaNvg~~--~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~~l~~~w~~~~~ly~tp~~s 683 (690)
-+||||+|||++ ++..|+..+|..++++|.+ .|..+++|++..+........+...+++++|.++|.++.||+++
T Consensus 4 ~VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~ 80 (155)
T PF11977_consen 4 PVVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGS 80 (155)
T ss_dssp -EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEE
T ss_pred EEEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCC
Confidence 389999999874 3335899999999999999 68889999998885433344667778999999999999999999
Q ss_pred C--------CCcCCC
Q 005580 684 N--------DDCYKV 690 (690)
Q Consensus 684 n--------DD~ywl 690 (690)
+ ||||||
T Consensus 81 ~~g~~~~~ydD~~il 95 (155)
T PF11977_consen 81 NYGSRSRNYDDRYIL 95 (155)
T ss_dssp ETTEEEEB-HHHHHH
T ss_pred CCCCcccccchHHHH
Confidence 8 999996
|
It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-09 Score=72.92 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=15.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (690)
Q Consensus 382 g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M 413 (690)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.4e-06 Score=101.81 Aligned_cols=282 Identities=7% Similarity=-0.047 Sum_probs=181.9
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..++.++|...|+.+.... |+ +...|..+-..+.+.|++++|+..|+++.... +.+...+..+...+.
T Consensus 88 ~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~---- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLV---- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH----
Confidence 4677777777777774321 11 22456666667777777777777777776531 223455666666666
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|...+. .+... .-.+...+..+ .. +...|++++|..+++.+....-.++...
T Consensus 156 ------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~~ 214 (656)
T PRK15174 156 ------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQES 214 (656)
T ss_pred ------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchhH
Confidence 6677777777663 22211 11122222221 23 5566777777777777655532222222
Q ss_pred cchhhhhhccc-----cccCCCchhhhhcCCCCC-hhhhHHHHHHHHHhccCHHH----HHHHHHHHHhCCCCCCHHHHH
Q 005580 322 KLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLT 391 (690)
Q Consensus 322 y~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~g~~pd~~tyn 391 (690)
+. .+...+. .+|...+...... .|+ ...+.. +-..|.+.|+.++ |...|++..... +.+...+.
T Consensus 215 ~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~ 288 (656)
T PRK15174 215 AG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVT 288 (656)
T ss_pred HH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHH
Confidence 21 1111111 3344444444432 233 334444 7788899999886 899999988753 23567899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHH
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSVE 469 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~t-y~~Li~~~~~ 469 (690)
.+...+.+.|++++|...+++.... .|+. ..+..+-..+.+.|+.++|...|+.+.+. .|+... +..+-.++..
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~ 364 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHH
Confidence 9999999999999999999998875 3543 45667778899999999999999998875 455433 3334567899
Q ss_pred cCChHHHHHHHHHHHHc
Q 005580 470 AGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (690)
.|+.++|...|++..+.
T Consensus 365 ~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 365 AGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998877
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-09 Score=72.29 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=19.0
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 417 g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55556666666666666666666666655555
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.70 E-value=3.3e-07 Score=103.16 Aligned_cols=243 Identities=13% Similarity=0.056 Sum_probs=160.7
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhcccccccc
Q 005580 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (690)
Q Consensus 212 ~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~ 290 (690)
.++-.|...|+.||.+||.+||.-|| ..|+++.|- +|. -|..+ .++ +...++.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 35667889999999999999999999 788888888 884 23333 555 77889999999
Q ss_pred ccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCC-Cchhhhh-------------------------
Q 005580 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG-PDDQSRK------------------------- 344 (690)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~-~~~~m~~------------------------- 344 (690)
....++.+.+. .|-.-||. .|..+|...+.- .|+...+
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 99999888876 56667777 666666522111 0111100
Q ss_pred ---cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005580 345 ---KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 345 ---~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (690)
.+.-||..+ +|--..-.|.++.+.+++..|.... ..|-.+ .|+-+.... .-..++....+..--.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~n--tpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDN--TPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCC--chHHHHHHHHHHhhcCC
Confidence 111122211 2222333334444444443332211 112111 133322222 22334444333331259
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHH-
Q 005580 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV- 497 (690)
Q Consensus 421 d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~- 497 (690)
+..+|.+++++-.-+|+++.|..++.+|.+.|+..+..-|-.||-+ .+...-+..+++.|.+. |+.|+ |+..
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ady 277 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADY 277 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHH
Confidence 9999999999999999999999999999999999999999999877 88888999999999999 77777 7766
Q ss_pred HHHHHcchHH
Q 005580 498 IAKWFNSKEA 507 (690)
Q Consensus 498 I~~~~~~~~~ 507 (690)
+...+..+..
T Consensus 278 vip~l~N~~t 287 (1088)
T KOG4318|consen 278 VIPQLSNGQT 287 (1088)
T ss_pred HHhhhcchhh
Confidence 7777775543
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.66 E-value=7.5e-06 Score=95.36 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=187.9
Q ss_pred cCcchHhHHHHHHHhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 005580 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (690)
Q Consensus 164 ~~~~~A~~vf~~m~~~g~~~~~~~~p-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd-~~tyn~Ll~~~~~~~~ 241 (690)
++.++|.+.|+...+.+ ...| +...|+.+-..+...|++++|+..|++.... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 56778999999986543 1223 3467888888888999999999999998864 455 456777777777
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...|++..+. .|+..
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~~- 433 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDFI- 433 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccCH-
Confidence 7789999999995 33322 22245567777777 88999999999999987764 23321
Q ss_pred cchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005580 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (690)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g 401 (690)
..|.. +-..+.+.|++++|...|++..... +-+...|+.+-..+...|
T Consensus 434 ------------------------------~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 434 ------------------------------FSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred ------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 12223 6677889999999999999988642 335678999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCc--c------hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 402 DGDMAFDMVKRMKSLGINPRL--R------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~--~------ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
++++|.+.|+...... |+. . .++..+..+-..|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999877642 321 1 12222233444699999999999987654 22445788999999999999
Q ss_pred HHHHHHHHHHHHc
Q 005580 474 DRVYYLLHKLRTS 486 (690)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (690)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.2e-07 Score=97.04 Aligned_cols=255 Identities=16% Similarity=0.110 Sum_probs=104.4
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~ty-n~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~ 240 (690)
+.++.++|+++++.-... ..+|+...| ..+-..+-..++.+.|++.++++...+-. +...|..++.. .
T Consensus 20 ~~~~~~~Al~~L~~~~~~------~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--- 88 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQK------IAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L--- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccc------ccccccccccccccccccccccccccccccccccccccc-ccccccccccc-c---
Confidence 678999999999654221 112322344 44444555678999999999999876533 45566677766 4
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
..++.++|.+++. +..+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 -------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~-- 144 (280)
T PF13429_consen 89 -------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD-- 144 (280)
T ss_dssp ---------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred -------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC--
Confidence 4677888888873 22221 1244456677777 8888999999999988765321121
Q ss_pred ccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 005580 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMS 399 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~ 399 (690)
+...|.. +-..+.+.|+.++|.++|++..+. .| |....+.++..+..
T Consensus 145 -----------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 145 -----------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -----------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 1222223 556778899999999999998875 35 47788899999999
Q ss_pred cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005580 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (690)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (690)
.|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|++..... .-|..+...+-+++...|+.++|.++
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 999999999998887764 4566777888999999999999999999987642 33788888889999999999999998
Q ss_pred HHHHHH
Q 005580 480 LHKLRT 485 (690)
Q Consensus 480 l~~M~~ 485 (690)
.++.-.
T Consensus 271 ~~~~~~ 276 (280)
T PF13429_consen 271 RRQALR 276 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 776543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.55 E-value=4.2e-05 Score=75.86 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=92.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g 436 (690)
+...|...|++++|.+.|++....... .+...+..+...+...|++++|.+.+.+..... ..+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 556677788888888888887764322 234556667777888888888888888876652 123456777778888888
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.++|.+.+++.... ...+...+..+...+...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 888888888888766 3445667777778888888888888887777653
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-05 Score=90.51 Aligned_cols=286 Identities=9% Similarity=-0.004 Sum_probs=161.1
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..++..+|.++++...+. .+.+...+..+...+.+.|++++|+..+++.... -+.+.. +..+-.++.
T Consensus 61 ~~g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~---- 127 (765)
T PRK10049 61 NLKQWQNSLTLWQKALSL-------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK---- 127 (765)
T ss_pred HcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH----
Confidence 556666666666665322 0112234455556666666666666666666644 122333 555544555
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|+..+. +.... .-.+...+..+... +...+..++|.+.++.... .|+...
T Consensus 128 ------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~~~ 184 (765)
T PRK10049 128 ------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAEKR 184 (765)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHHHH
Confidence 5566666666663 22221 11122233334444 5555666666665553332 222100
Q ss_pred cc----hhhhhhcc-------------ccccCCCchhhhhc-CCCCChh-hhHHHH---HHHHHhccCHHHHHHHHHHHH
Q 005580 322 KL----NSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEIR---LSEDAKKYAFQRGFEIYEKMC 379 (690)
Q Consensus 322 y~----~~~li~g~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~l---I~~~~k~g~~~~A~~lf~~M~ 379 (690)
.. ...++... .+.|...+..+... .-.|+.. .+.... +..+...|++++|...|+.+.
T Consensus 185 ~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll 264 (765)
T PRK10049 185 DLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLK 264 (765)
T ss_pred HHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 00 00000000 01122223333321 1222221 111111 234457789999999999999
Q ss_pred hCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHhCC-
Q 005580 380 LDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG- 452 (690)
Q Consensus 380 ~~g~~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g- 452 (690)
+.+.. |+..- -.+...|...|++++|..+|+++.... |. ...+..+..++...|+.++|.++++.+.+..
T Consensus 265 ~~~~~~P~~a~-~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P 341 (765)
T PRK10049 265 AEGQIIPPWAQ-RWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSP 341 (765)
T ss_pred ccCCCCCHHHH-HHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCC
Confidence 87632 44322 224678999999999999999987542 32 2345667778899999999999999988652
Q ss_pred ----------CCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 453 ----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 453 ----------v~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-.|+. ..+..+...+...|+.++|+++|+++...
T Consensus 342 ~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 342 PFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12342 34556777888999999999999999887
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.5e-05 Score=87.53 Aligned_cols=276 Identities=8% Similarity=-0.014 Sum_probs=182.0
Q ss_pred hcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcc
Q 005580 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL--LYLCSSAA 240 (690)
Q Consensus 163 ~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~L--l~~~~~~~ 240 (690)
.|+++.|.+....-.+. ...|. ..|-..-.+..+.|+++.|...|.++.+ ..|+...+-.+ ...+.
T Consensus 97 eGd~~~A~k~l~~~~~~------~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH------AEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHhc------ccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 48888999887775221 12233 4454445555899999999999999975 45665544422 33444
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
..|+.+.|...++ ++.+. .-.+......+... |.+.|++++|.+++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 22255667788888 999999999999999999987654331
Q ss_pred -------ccchhhhhhcc-ccccCC----CchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHH
Q 005580 321 -------MKLNSQLLDGR-SNLERG----PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (690)
Q Consensus 321 -------ty~~~~li~g~-~~~a~~----~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ 388 (690)
+|. .++.-. ...... ++..+... ...+...... +...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~-~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVA-MAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 111100 010000 11111111 1112223333 677888888999999888888774 44442
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (690)
-.++.+....++.+++.+..+...+. .||.. .+.++=..|.+.+++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 12344445568888888888887765 35544 4566667778888899999998888764 58888888888888
Q ss_pred HHcCChHHHHHHHHHH
Q 005580 468 VEAGKGDRVYYLLHKL 483 (690)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (690)
.+.|+.++|.+++++=
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8899988888887764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.2e-07 Score=92.36 Aligned_cols=251 Identities=15% Similarity=0.079 Sum_probs=107.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC
Q 005580 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (690)
Q Consensus 197 lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~ 276 (690)
+-..+.+.|++++|++++++-....-+|+...|-.++.-++. ..++.+.|...+. ++... +-.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~~ 76 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-ccc
Confidence 355677889999999999765544435666666666555553 5677888888884 44432 222
Q ss_pred ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHH
Q 005580 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (690)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (690)
+...|..++. +...+++++|.+++.+.-++. ++.. .+..
T Consensus 77 ~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~--------------------------------~l~~ 115 (280)
T PF13429_consen 77 NPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPR--------------------------------YLLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-------ccccccccccccccccccccc--cccc--------------------------------hhhH
Confidence 2223444333 347788888888776654432 1211 1223
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHh
Q 005580 357 IRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (690)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k 434 (690)
++..+.+.++.+++.+++++..... ..+|...|..+...+.+.|+.++|.+++++..+. .|+ ....+.++..+..
T Consensus 116 -~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 116 -ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 6677889999999999999987543 4578888999999999999999999999998876 464 6678889999999
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-ChhHHHH-HHHHHcchHHHHhh
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~~~-I~~~~~~~~~~~a~ 511 (690)
.|+.+++.++++...+.. ..|...+..+-.+|...|+.++|...|++.... .+ +|.+... -..+...|...+|.
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 999999999998887764 556667889999999999999999999999886 44 3333322 45555556554444
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.4e-05 Score=88.23 Aligned_cols=300 Identities=11% Similarity=-0.006 Sum_probs=183.3
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~ 237 (690)
..-+.++.++|.+.|+.... ..|+...|..+-.+|.+.|++++|++.++..... .| +...|..+-.+|.
T Consensus 136 ~~~~~~~~~~Ai~~y~~al~--------~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 136 KAYRNKDFNKAIKLYSKAIE--------CKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHh--------cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 34467899999999999753 2345578888999999999999999999998864 34 4556777777777
Q ss_pred hcccCCcccCCCCchhhHHhHhhhhccc-------c----------------ccccccCCCCccchhhc-----------
Q 005580 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMN-------S----------------TELGDSRDMDNNGQLDY----------- 283 (690)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~vf~~~~~~-------s----------------~em~~~~gv~d~~tyn~----------- 283 (690)
..|++++|..-|...... . .+..+. .-.+...+..
T Consensus 206 ----------~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 206 ----------GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILET-KPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred ----------HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCCHHHHHHHHHHccCC
Confidence 778888887654211000 0 000000 0000000000
Q ss_pred ---------------cccccc----cccccccCCChhhHHHHHHHHHHcC-CCCCcc-ccc-hhh--hhhccccccCCCc
Q 005580 284 ---------------GSSPMI----DKLESNSSYRFDDLDSTFNEKENLG-QFSNGH-MKL-NSQ--LLDGRSNLERGPD 339 (690)
Q Consensus 284 ---------------LI~~~~----~~~~~~~~g~~~~A~~lf~eM~~~g-~~Pd~~-ty~-~~~--li~g~~~~a~~~~ 339 (690)
+..+.. ...+....+.+++|.+.|++....+ ..|+.. .|. .+. ...|--+.|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 000000 0000112356788888888887765 234322 222 000 0111113344444
Q ss_pred hhhhhcCCCCChh-hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005580 340 DQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (690)
Q Consensus 340 ~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (690)
..... +.|+.. .|.. +-..+...|++++|...|++..+.. +-+..+|..+...+...|++++|...|++..+.
T Consensus 355 ~kal~--l~P~~~~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l-- 428 (615)
T TIGR00990 355 SKSIE--LDPRVTQSYIK-RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL-- 428 (615)
T ss_pred HHHHH--cCCCcHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 44332 245433 4444 6667777888888888888776643 234667777778888888888888888877655
Q ss_pred CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 419 NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 419 ~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.| +...|..+-..+.+.|+.++|...|++..+.. .-+...|+.+-..+...|++++|...|++-...
T Consensus 429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 24 34556666677778888888888888776532 224667777778888888888888888887665
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.8e-05 Score=94.89 Aligned_cols=294 Identities=11% Similarity=-0.002 Sum_probs=174.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
..+.++.++|.+.|++..+.. | .+...+..+-..+.+.|++++|++.|++..+.. +.+...+..+...+...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 447789999999999986531 1 234677778899999999999999999998642 22333444343333210
Q ss_pred ccC--------------------------------CcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccc
Q 005580 240 AVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP 287 (690)
Q Consensus 240 ~~~--------------------------------~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~ 287 (690)
... ...+...|+.++|...|. +.... .-.+...+..+-..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH
Confidence 000 000114578888888884 33321 11144445556666
Q ss_pred cccccccccCCChhhHHHHHHHHHHcCCCCCccc--cchhhhhhccc--cccCCCchhhhhcCCCCChhh---------h
Q 005580 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD---------A 354 (690)
Q Consensus 288 ~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t--y~~~~li~g~~--~~a~~~~~~m~~~g~~pd~~t---------y 354 (690)
|.+.|++++|...|++..+. .|+... |..+.+..... ..|...+..+......++... +
T Consensus 505 ------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 ------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred ------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 88999999999999998764 343322 11111111000 122222222221111111111 1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 005580 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (690)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k 434 (690)
-. +...+...|+.++|.++++. .+++...+..|-..+.+.|+.++|.+.|++..+.. .-+...+..+...|..
T Consensus 577 l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 11 34556677777777777762 23444556667777777788888888777776652 2245667777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 435 NGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|+.++|.++++...+. .| +..++..+-..+...|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 78888888777766543 23 3444555666677777788888877777665
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.8e-05 Score=84.02 Aligned_cols=283 Identities=9% Similarity=-0.025 Sum_probs=178.4
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~--tyn~Ll~~~~~ 238 (690)
..|+...|.+.+....+. .|+ ...|-..-.+..+.|+.+.|.+.|.+..+.- |+.. .--+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568999999999876322 232 1333444566778899999999999987543 4432 2232344455
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (690)
..|+.+.|...+. ++.+. .-.+...+..+... +.+.|++++|.+++..+.+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6789999999995 55553 32255567777778 9999999999999999999875433
Q ss_pred ccccc------hhhhhhccccccCCCchhhhhcCC---CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 005580 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDW---SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (690)
Q Consensus 319 ~~ty~------~~~li~g~~~~a~~~~~~m~~~g~---~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t 389 (690)
..... .+.+-.+-...+...+..+...-- ..+...+-. +...+...|+.++|.+++++..+.. ||...
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 32211 000111111111112222221110 013334444 6778888888888888888888753 33321
Q ss_pred H-HHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCcc--h-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005580 390 L-TAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLR--S-YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (690)
Q Consensus 390 y-n~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~--t-y~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (690)
. -.++..+ ...++.+.+.+.++...+. .|+-. . ..++=..|.+.|++++|.+.|+........||...+..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 1 0123322 3356777777777766544 35444 3 335556677888888888888854454557888888888
Q ss_pred HHHHHHcCChHHHHHHHHHH
Q 005580 464 LRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M 483 (690)
-..+.+.|+.++|.+++++-
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00029 Score=84.12 Aligned_cols=290 Identities=10% Similarity=-0.035 Sum_probs=191.0
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd-~~tyn~Ll~~~~~ 238 (690)
+.+.++.++|...++...+. .| .+.. +..+-.++.+.|+.++|+..++++... .|+ ...+..+..++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-
Confidence 34789999999999998543 12 2234 888888899999999999999999875 343 444455666665
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccC----CCC----ccchhhccccccccccccccCCCh---hhHHHHH
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~----gv~----d~~tyn~LI~~~~~~~~~~~~g~~---~~A~~lf 307 (690)
..|..+.|...+. ...... ++. .......+... ....+++ ++|.+.+
T Consensus 162 ---------~~~~~e~Al~~l~-------~~~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAID-------DANLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 5677888888874 111110 000 00111112222 3344455 7788888
Q ss_pred HHHHHc-CCCCCccc-cch------hh-hhhccccccCCCchhhhhcCCC-CCh-hhhHHHHHHHHHhccCHHHHHHHHH
Q 005580 308 NEKENL-GQFSNGHM-KLN------SQ-LLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIYE 376 (690)
Q Consensus 308 ~eM~~~-g~~Pd~~t-y~~------~~-li~g~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (690)
+.+.+. ...|+... +.. +. +..+-...|...|..+...+-. |+- ..+ +-..|...|++++|..+|+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHHH
Confidence 888765 33343321 110 01 1122225566677777765421 332 222 3467889999999999999
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----------CCCC---cchHHHHHHHHHhcCChH
Q 005580 377 KMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 377 ~M~~~g~~p---d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----------~~Pd---~~ty~~lI~~~~k~g~~~ 439 (690)
+........ ....+..|..++...|++++|.++++.+.... -.|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 987643111 13456667778899999999999999988652 1123 123456677888899999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+|.++++++... ..-+...+..+...+...|++++|++.+++....
T Consensus 377 eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 377 QAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999998765 2446778888888899999999999999998877
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-06 Score=59.77 Aligned_cols=33 Identities=21% Similarity=0.302 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd 421 (690)
|||+||++|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00039 Score=86.91 Aligned_cols=253 Identities=10% Similarity=0.046 Sum_probs=176.9
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
....++.++|.+.|++..+.. |+ +...+..+-..|.+.|++++|+..|+++.... +-+...+-.+.-.+.
T Consensus 471 ~~~~g~~~eA~~~~~~Al~~~--P~-----~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~-- 540 (1157)
T PRK11447 471 LENQGKWAQAAELQRQRLALD--PG-----SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLS-- 540 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH--
Confidence 346789999999999985431 21 23567778889999999999999999988642 112333222222233
Q ss_pred ccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccc----------hhhccccccccccccccCCChhhHHHHHHH
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG----------QLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~----------tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (690)
..|+.++|...+. .+... ...+.+ .+-.+... +...|+.++|..+++.
T Consensus 541 --------~~~~~~~Al~~l~-------~l~~~-~~~~~~~~l~~~l~~~~~l~~a~~------l~~~G~~~eA~~~l~~ 598 (1157)
T PRK11447 541 --------GSDRDRAALAHLN-------TLPRA-QWNSNIQELAQRLQSDQVLETANR------LRDSGKEAEAEALLRQ 598 (1157)
T ss_pred --------hCCCHHHHHHHHH-------hCCch-hcChhHHHHHHHHhhhHHHHHHHH------HHHCCCHHHHHHHHHh
Confidence 5688899998885 22111 000000 01112233 6678888888888761
Q ss_pred HHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH
Q 005580 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (690)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t 389 (690)
.|+.. ..+.. +-..|.+.|+.++|.+.|++..+.. +.+...
T Consensus 599 ------~p~~~-------------------------------~~~~~-La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a 639 (1157)
T PRK11447 599 ------QPPST-------------------------------RIDLT-LADWAQQRGDYAAARAAYQRVLTRE-PGNADA 639 (1157)
T ss_pred ------CCCCc-------------------------------hHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 23221 11223 6677889999999999999998863 336788
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CC---CHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEAL 463 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv--~p---d~~ty~~L 463 (690)
+..+...|...|+.++|.+.++...+. .|+ ...+..+-..+...|+.++|.++++.+....- .| +...+..+
T Consensus 640 ~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~ 717 (1157)
T PRK11447 640 RLGLIEVDIAQGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDA 717 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHH
Confidence 999999999999999999999977654 344 34556677788899999999999999876532 22 23466666
Q ss_pred HHHHHHcCChHHHHHHHHHHHH
Q 005580 464 LRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~ 485 (690)
-..+.+.|+.++|...|++-..
T Consensus 718 a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 718 ARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 7888999999999999998864
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.9e-05 Score=81.47 Aligned_cols=279 Identities=12% Similarity=0.023 Sum_probs=156.0
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
+.+.|+.++|+.+++.|++.. |+ .+..|-.+-.++...|+.+.|...|.+..+ +.|+.+-..+-+.-+-+
T Consensus 126 ~kerg~~~~al~~y~~aiel~--p~-----fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk- 195 (966)
T KOG4626|consen 126 LKERGQLQDALALYRAAIELK--PK-----FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK- 195 (966)
T ss_pred HHHhchHHHHHHHHHHHHhcC--ch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH-
Confidence 348899999999999996532 21 246899999999999999999999998875 45776665555544443
Q ss_pred ccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCc
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (690)
..|++++|..-+. ..++.... =.+.|+-|=.. +-..|++-.|..-|++-... .|+-
T Consensus 196 --------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~f 251 (966)
T KOG4626|consen 196 --------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPNF 251 (966)
T ss_pred --------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCcc
Confidence 3477888877774 22222211 23557777666 77788888888888876653 2321
Q ss_pred c-c-cchhhhhhccccccCCCchhh-----hhcCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHH
Q 005580 320 H-M-KLNSQLLDGRSNLERGPDDQS-----RKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASL 390 (690)
Q Consensus 320 ~-t-y~~~~li~g~~~~a~~~~~~m-----~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~ty 390 (690)
- . +|.|.+. .+.+.|+.. ..-.+.|+- +.|.+ |-..|-..|.+|-|...|++-.+. .|+ ...|
T Consensus 252 ~dAYiNLGnV~-----ke~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay 323 (966)
T KOG4626|consen 252 LDAYINLGNVY-----KEARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDAY 323 (966)
T ss_pred hHHHhhHHHHH-----HHHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHHH
Confidence 1 0 1111110 011111111 111223332 22333 334455556666666666655542 333 2456
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (690)
|.|..++-..|++.+|.+.+...... .|+ ..+.+.|-..|...|.+++|..+|....+ +.|+ ...+|-|-..|-
T Consensus 324 ~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 324 NNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK 399 (966)
T ss_pred hHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH
Confidence 66666666666666666666554433 122 23445555555556666666655555433 2232 223444555555
Q ss_pred HcCChHHHHHHHHHHH
Q 005580 469 EAGKGDRVYYLLHKLR 484 (690)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (690)
+.|++++|..-+++-.
T Consensus 400 qqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEAL 415 (966)
T ss_pred hcccHHHHHHHHHHHH
Confidence 5555555555555443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00025 Score=72.37 Aligned_cols=63 Identities=16% Similarity=0.129 Sum_probs=39.5
Q ss_pred ccccchhhhhhhhhhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHc
Q 005580 143 IGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLR-VELDMCSKRGDVMGAIRLYDKAQRE 220 (690)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn-~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (690)
+....+..+|-.+. .+.++|.++|-+|.+. .|..+--+ +|=+.|-+.|.++.|+.++..+.++
T Consensus 35 lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s 98 (389)
T COG2956 35 LSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES 98 (389)
T ss_pred ccHHHHhHHHHHhh-------cCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 34445556666655 4677888888888541 22222222 3445566778888888888887754
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-06 Score=58.17 Aligned_cols=35 Identities=29% Similarity=0.598 Sum_probs=31.1
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 005580 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (690)
Q Consensus 423 ~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~ 457 (690)
+|||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999873
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00049 Score=83.24 Aligned_cols=230 Identities=8% Similarity=-0.039 Sum_probs=168.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccc
Q 005580 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (690)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em 269 (690)
+...|..+-.++.. |+..+|+..|.+.... .|+......+...+. ..|+.++|...|. ++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 34566666666655 8999999988877754 366554333344444 6799999999995 33
Q ss_pred cccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCC
Q 005580 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (690)
Q Consensus 270 ~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p 349 (690)
... -++...+..+-.. +.+.|++++|...|++..+.. |+....
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 321 1122234444445 778999999999999887653 332111
Q ss_pred ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHH
Q 005580 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPA 428 (690)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~l 428 (690)
+.. +...+.+.|++++|...|++..+. .|+...|..+-..+.+.|+.++|...+++.... .|+. ..++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223334569999999999999874 467889999999999999999999999998776 4554 456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 429 I~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-..+...|+.++|..+++...+.. .-+...+..+-.++...|++++|...|++..+.
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 678999999999999999987742 225677888889999999999999999999877
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.8e-06 Score=57.29 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p 224 (690)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00088 Score=79.47 Aligned_cols=286 Identities=10% Similarity=-0.045 Sum_probs=168.3
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..++.++|.++|+.+.+.. |+ +...+..++..+...++.++|++.+.++... .|+...|-.++..+.
T Consensus 114 ~~gdyd~Aiely~kaL~~d--P~-----n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~---- 180 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD--PT-----NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR---- 180 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC--CC-----CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH----
Confidence 4567777777777774431 11 1234446667777777777777777777643 455555533333332
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..++..+|+..+. ++.+. .-.+.-.+.-++.. +.+.|-...|.++..+ .|+.++
T Consensus 181 ------~~~~~~~AL~~~e-------kll~~-~P~n~e~~~~~~~~------l~~~~~~~~a~~l~~~------~p~~f~ 234 (822)
T PRK14574 181 ------ATDRNYDALQASS-------EAVRL-APTSEEVLKNHLEI------LQRNRIVEPALRLAKE------NPNLVS 234 (822)
T ss_pred ------hcchHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCcHHHHHHHHh------CccccC
Confidence 2233434666663 44442 11122223333344 4555555555544432 233332
Q ss_pred cc---------hhhhh-hccc------------cccCCCchhhhh-cC-CCCChhhhHHHH---HHHHHhccCHHHHHHH
Q 005580 322 KL---------NSQLL-DGRS------------NLERGPDDQSRK-KD-WSIDNQDADEIR---LSEDAKKYAFQRGFEI 374 (690)
Q Consensus 322 y~---------~~~li-~g~~------------~~a~~~~~~m~~-~g-~~pd~~tyn~~l---I~~~~k~g~~~~A~~l 374 (690)
-. ....+ .+.. +.|..-.+.+.. .+ .++...-|-.+. +-++.+.|++.++.+.
T Consensus 235 ~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~ 314 (822)
T PRK14574 235 AEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKE 314 (822)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 22 00001 0100 011111222221 11 122222232323 3567788999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 375 f~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~ 449 (690)
|+.|...|......+--++.++|...+++++|..+++...... ..++......|..++...+++++|..+++++.
T Consensus 315 y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~ 394 (822)
T PRK14574 315 YEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYS 394 (822)
T ss_pred HHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 9999998876555688899999999999999999999986542 22344446788999999999999999999998
Q ss_pred hCC-------------CCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 450 EHG-------------VYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 450 ~~g-------------v~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.- --||-..+ ..++..+...|++.+|+++++++...
T Consensus 395 ~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 395 EQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 731 11333333 34566678899999999999999877
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00071 Score=66.94 Aligned_cols=157 Identities=12% Similarity=0.036 Sum_probs=125.7
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+...|++++|...|++..+.. |+. ...+.. +...|...|++++|.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~-------------------------------~~~~~~-la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDD-------------------------------YLAYLA-LALYYQQLGELEKAED 86 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--ccc-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 888999999999999886542 322 122333 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g 452 (690)
.|++..+... .+...+..+...+...|++++|.+.+++.......| +...+..+-..+...|+.++|...+++..+..
T Consensus 87 ~~~~al~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLNP-NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999887642 356778888999999999999999999988753222 34566777788899999999999999987753
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+...+..+...+...|++++|..++++....
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 224667888999999999999999999998876
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.7e-06 Score=56.04 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (690)
|||++|++|++.|+++.|.++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0012 Score=78.38 Aligned_cols=284 Identities=9% Similarity=-0.051 Sum_probs=192.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---Y 234 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~--~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll---~ 234 (690)
..+.|+.+.|+..|++..+. .|+. ..+ .++..+...|+.++|+..+++.. .|+...+..++ .
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 34778899999999998432 2321 233 88888889999999999999987 44333333333 3
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcC
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (690)
.+. ..|+.++|.++|. ++.+. .-.|.-.+..++.. +...++.++|++.++.....
T Consensus 111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER- 165 (822)
T ss_pred HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence 455 6799999999994 55553 22244445566666 88999999999999998765
Q ss_pred CCCCccccchhhhhhcc---c--cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHH-------------
Q 005580 315 QFSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE------------- 376 (690)
Q Consensus 315 ~~Pd~~ty~~~~li~g~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~------------- 376 (690)
.|+...|- .+..-+ . ..|...+.++... .|+...+..-++..+.+.|-...|.++..
T Consensus 166 -dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 166 -DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred -CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 56644442 221111 1 2355566666664 57655554446667677665555544433
Q ss_pred -----------------------------------HHHh-CCCCCCH-HHH-HHH---HHHHHhcCChHHHHHHHHHHHH
Q 005580 377 -----------------------------------KMCL-DEVPMNE-ASL-TAV---GRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 377 -----------------------------------~M~~-~g~~pd~-~ty-n~L---I~~~~~~g~~~~A~~l~~~M~~ 415 (690)
.+.. -+-.|.. .-| .+. +-++.+.|+..++.+.++.|+.
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 2222 1111221 111 222 3367788999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|...-.++=-.+-++|...+..++|..++....... ..++......|.-+|...+++++|..+++++.+.
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8865344467788899999999999999999986543 2345555788999999999999999999999984
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00078 Score=74.11 Aligned_cols=219 Identities=8% Similarity=-0.034 Sum_probs=156.5
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNV 231 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~-------~tyn~ 231 (690)
.....++.+.|.+.++.+.+.. |+ +...+..+...|.+.|++++|++++..+.+.+..++. .+|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P~-----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--PR-----HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 3446789999999999985432 11 2367889999999999999999999999988765322 12333
Q ss_pred HHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHH
Q 005580 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (690)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (690)
++.... +....+....++. ++.+ ..+ +.-..-.+... +...|+.++|.+++++.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~--~~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSR--KTRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCH--HHhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333322 1122233333332 2211 112 33345556666 88899999999999887
Q ss_pred HHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 005580 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (690)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 390 (690)
.+. .||.. .+++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred Hhc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 663 23221 114455566799999999999998763 2355668
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~ 449 (690)
.++-..|.+.+++++|.+.|+...+. .|+..+|..+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88999999999999999999998875 6999999999999999999999999998753
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0019 Score=78.22 Aligned_cols=216 Identities=11% Similarity=0.028 Sum_probs=153.8
Q ss_pred cCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 005580 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (690)
Q Consensus 164 ~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~ 243 (690)
++.++|...+.+-... .|+......+...+.+.|++++|+..|+++... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6778899877776432 244344333444556899999999999997643 455555555556666
Q ss_pred cccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccc
Q 005580 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (690)
Q Consensus 244 ~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (690)
+.|+.++|...+. +.... ...+...+..+... ....|++++|...|++-.+. .|+.
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~---- 609 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSA---- 609 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCH----
Confidence 7899999999995 33322 11121112222222 33459999999999887754 2432
Q ss_pred hhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 005580 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (690)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~ 403 (690)
..|.. +-..+.+.|+.++|...|++..... +-+...++.+-..+...|+.
T Consensus 610 ----------------------------~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 610 ----------------------------NAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ----------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 23334 6678899999999999999988763 23456778888899999999
Q ss_pred HHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 404 ~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
++|.++++...+. .| +...+..+-.++...|++++|...|++..+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 9999999988765 34 4467788888999999999999999998764
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=53.02 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~ 222 (690)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.0034 Score=70.02 Aligned_cols=241 Identities=12% Similarity=0.004 Sum_probs=158.3
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCH----HHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQR---EGIKLGQ----YHY 229 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~-~~p~~~t-yn~lI~~~~k~g~~~~A~~lf~~M~~---~G~~pd~----~ty 229 (690)
.....++.+.|..+|..-.+. +++..| ..|.+.+ .+.+=..|...+++++|..+|.++.. ..+-++. .++
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 566789999999999986553 112222 3444333 33355678888999999999999973 2222232 334
Q ss_pred HHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHH
Q 005580 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (690)
Q Consensus 230 n~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~e 309 (690)
+.|=.+|+ +.|++++|...++ .|.+++..
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~ 315 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK 315 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH
Confidence 44444555 6666666666652 33334433
Q ss_pred HHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC---CCCCC
Q 005580 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---EVPMN 386 (690)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---g~~pd 386 (690)
..|.. .|.+.+..+-+...|+..+++++|..++..-.+. -+.++
T Consensus 316 --~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 316 --LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred --hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 11110 1122222222677788888999998888765431 22233
Q ss_pred H----HHHHHHHHHHHhcCChHHHHHHHHHHHHC----CC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHH----hC
Q 005580 387 E----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GI--NP-RLRSYGPALSVFCNNGDVDKACSVEEHML----EH 451 (690)
Q Consensus 387 ~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~--~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~----~~ 451 (690)
. -+|+.|-..|-+.|++++|.+++++.... +- .+ .-..++-|-..|-+.+..++|.++|.+-. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 3 57999999999999999999999987643 11 12 23456777788889999999999998743 33
Q ss_pred CCC-C-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 452 GVY-P-EEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 452 gv~-p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
|.. | ...+|.-|...|.+.|++++|.++.+...
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 332 3 34688999999999999999999988876
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.003 Score=70.40 Aligned_cols=283 Identities=14% Similarity=0.049 Sum_probs=185.7
Q ss_pred CcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhccc
Q 005580 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 165 ~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G--~~pd~~tyn~Ll~~~~~~~~ 241 (690)
+..+|...|..+. . ..+| ......+=.+|...++.++|.++|+..++.. ..-+..+|.++|.-+-+.
T Consensus 334 ~~~~A~~~~~klp------~--h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-- 403 (638)
T KOG1126|consen 334 NCREALNLFEKLP------S--HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-- 403 (638)
T ss_pred HHHHHHHHHHhhH------H--hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--
Confidence 3446667776641 1 1222 1455566678888899999999999998642 235788999999887731
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCC-Ccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH 320 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P-d~~ 320 (690)
-++..+. +++++. .-....+|.++=+. |.-.++.+.|.+.|++-.+. .| ...
T Consensus 404 ------------v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY 456 (638)
T KOG1126|consen 404 ------------VALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY 456 (638)
T ss_pred ------------HHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence 2222222 333332 11145789999999 99999999999999877653 34 445
Q ss_pred ccchhhhhhccccccCCCch-hh--hhcCCCCChhhhHHHH--HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 321 MKLNSQLLDGRSNLERGPDD-QS--RKKDWSIDNQDADEIR--LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~-~m--~~~g~~pd~~tyn~~l--I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ 395 (690)
+|+ +-|+-..+..-|+ .| -+..+..|...||+.- =-.|.|.++++.|+--|+...+-+. -+.+....+-.
T Consensus 457 ayT----LlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~ 531 (638)
T KOG1126|consen 457 AYT----LLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGR 531 (638)
T ss_pred hhh----hcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhH
Confidence 553 3344322211111 11 1345566777887721 2457788999999998888776442 25566777777
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChH
Q 005580 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGD 474 (690)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~ 474 (690)
.+-+.|+.|+|++++++.....-+ |.-+---....+...++.++|+..++++++ +.|+. .+|-.|-..|.+.|+.+
T Consensus 532 ~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~ 608 (638)
T KOG1126|consen 532 IQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTD 608 (638)
T ss_pred HHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccch
Confidence 888899999999999987655322 222222233445567899999999999877 55654 56667778888899999
Q ss_pred HHHHHHHHHHHcCCCCChhH
Q 005580 475 RVYYLLHKLRTSVRKVSPST 494 (690)
Q Consensus 475 ~A~~ll~~M~~~~~g~~p~t 494 (690)
.|+.=|.-+.+. .|.++-
T Consensus 609 ~Al~~f~~A~~l--dpkg~~ 626 (638)
T KOG1126|consen 609 LALLHFSWALDL--DPKGAQ 626 (638)
T ss_pred HHHHhhHHHhcC--CCccch
Confidence 998887777766 444443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.83 E-value=2e-05 Score=52.35 Aligned_cols=29 Identities=17% Similarity=0.258 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (690)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0022 Score=73.78 Aligned_cols=116 Identities=10% Similarity=-0.092 Sum_probs=60.7
Q ss_pred CcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005580 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (690)
Q Consensus 165 ~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~---------k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~ 234 (690)
....|..+|++-.+. .|+ ...|..+-.++. ..+++++|...+++..... +-+...+..+-.
T Consensus 276 ~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 356788888887432 232 234443333322 3345789999999887643 224455555544
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHc
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (690)
.+. ..|+.++|...|+ +..+. .-.+...|..+-.. +...|++++|...|++..+.
T Consensus 347 ~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l 401 (553)
T PRK12370 347 INT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKL 401 (553)
T ss_pred HHH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhc
Confidence 444 4566677777664 22221 11122234444444 55556666666666555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0012 Score=75.90 Aligned_cols=239 Identities=9% Similarity=-0.063 Sum_probs=130.8
Q ss_pred cHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhc
Q 005580 190 EQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (690)
Q Consensus 190 ~~~tyn~lI~~~~k-----~g~~~~A~~lf~~M~~~G~~pd~-~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~ 263 (690)
+...|...+.+... .++.++|+.+|++..+. .|+- ..|..|-.++..... .+.....++.++|...+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~-~g~~~~~~~~~~A~~~~~--- 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQ-MGIFDKQNAMIKAKEHAI--- 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHH-cCCcccchHHHHHHHHHH---
Confidence 44566666666432 23468999999998753 4554 344443333321110 000113345667777774
Q ss_pred cccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhh
Q 005580 264 MNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343 (690)
Q Consensus 264 ~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~ 343 (690)
+..+. +-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 329 ----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~---------------------- 373 (553)
T PRK12370 329 ----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISAD---------------------- 373 (553)
T ss_pred ----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHH----------------------
Confidence 22221 11144445555444 566777788888777766542 33211
Q ss_pred hcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc
Q 005580 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423 (690)
Q Consensus 344 ~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 423 (690)
.|.. +-..|...|+.++|...|++..+....+ ...+..++..+...|++++|...+++..+.. .|+..
T Consensus 374 ---------a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~ 441 (553)
T PRK12370 374 ---------IKYY-YGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNP 441 (553)
T ss_pred ---------HHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCH
Confidence 1222 4456677788888888888777653221 1223334444566777788888777765542 24332
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 424 -SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 424 -ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.+..+-..+...|+.++|...+.++... .|+. ...+.|-..|+..| ++|...++.+.+
T Consensus 442 ~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 442 ILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 3455556666778888888877776443 3332 23334444556555 466666666554
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0055 Score=68.98 Aligned_cols=261 Identities=13% Similarity=0.031 Sum_probs=170.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCcc
Q 005580 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV-LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (690)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~-Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~ 278 (690)
.+...|++++|++.+..-. ..-+|...+-- .-..+. +.|+.++|..++. ++.+. +..|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCcH
Confidence 3477899999999886633 33456555444 444444 7888899998884 55553 33244
Q ss_pred chhhccccccccccccc-----cCCChhhHHHHHHHHHHcCCCCCccccchhhhhhc------cccccCCCchhhhhcCC
Q 005580 279 GQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDG------RSNLERGPDDQSRKKDW 347 (690)
Q Consensus 279 ~tyn~LI~~~~~~~~~~-----~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g------~~~~a~~~~~~m~~~g~ 347 (690)
--|..|..+ .. .....+...++++++...- |-....- .+.=- +-..+...+..+..+|+
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~--rl~L~~~~g~~F~~~~~~yl~~~l~Kgv 142 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPR--RLPLDFLEGDEFKERLDEYLRPQLRKGV 142 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchh--HhhcccCCHHHHHHHHHHHHHHHHhcCC
Confidence 446666666 41 2235677788888886653 3332221 11111 11233334555666665
Q ss_pred CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHhcCChHHHHHHHH
Q 005580 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMVK 411 (690)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------~~pd~~--tyn~LI~~~~~~g~~~~A~~l~~ 411 (690)
++ +++. |-+.|....+.+-..+++.+.... | -.|... ++.-|...|-..|+.++|+++++
T Consensus 143 Ps---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id 218 (517)
T PF12569_consen 143 PS---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYID 218 (517)
T ss_pred ch---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44 3445 666777666666666666665532 1 134443 44666777889999999999999
Q ss_pred HHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005580 412 RMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490 (690)
Q Consensus 412 ~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~ 490 (690)
+..+. .|+ +.-|..--..+-+.|++++|.+.+++....... |-..-+-....+.++|++++|.+++........++
T Consensus 219 ~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 219 KAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 87776 466 456777777888999999999999998876543 77888888899999999999999999998873323
Q ss_pred ChhHHHH
Q 005580 491 SPSTADV 497 (690)
Q Consensus 491 ~p~t~~~ 497 (690)
..+...+
T Consensus 296 ~~~L~~m 302 (517)
T PF12569_consen 296 LSNLNDM 302 (517)
T ss_pred ccCHHHH
Confidence 3334443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.024 Score=63.85 Aligned_cols=295 Identities=12% Similarity=0.044 Sum_probs=186.0
Q ss_pred HHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005580 158 QKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (690)
Q Consensus 158 ~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~ 236 (690)
+-+.+.|+.++|++.++.-.. ..+| ...+-..-..+.+.|+.++|..+|..+.+.+ |+-..|-..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 355589999999999987522 2233 3556667778899999999999999999865 6666665555554
Q ss_pred HhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC--ccchhhccccccccccccccCCCh-hhHHHHHHHHHHc
Q 005580 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENL 313 (690)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~ 313 (690)
..... .......+....+++ ++... .+ +.+-.-.|. +.....+ ..+...+..+..+
T Consensus 82 ~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 82 LGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred Hhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhc
Confidence 41110 001124555666664 33221 11 111111111 2233334 3456667778888
Q ss_pred CCCCCccccc-----------hhhhhhcccccc--CCCchhh-hhcCCCCChhhhHHHHH-HHHHhccCHHHHHHHHHHH
Q 005580 314 GQFSNGHMKL-----------NSQLLDGRSNLE--RGPDDQS-RKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKM 378 (690)
Q Consensus 314 g~~Pd~~ty~-----------~~~li~g~~~~a--~~~~~~m-~~~g~~pd~~tyn~~lI-~~~~k~g~~~~A~~lf~~M 378 (690)
|+.+--...- ...++.++.... ...+..- ....-.|....|...++ ..|-..|+.++|++.+++-
T Consensus 141 gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 141 GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8644222211 112222222110 0011100 01112344445544344 5577899999999999998
Q ss_pred HhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 005580 379 CLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (690)
Q Consensus 379 ~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~ 457 (690)
.+. .|+ +-.|.+-.+.|-+.|++++|.+.++....... -|.+.=+-....+.++|++++|.+++....+.+..|-.
T Consensus 221 I~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 221 IEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred Hhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 876 355 56788889999999999999999999887754 47888888999999999999999999999887764432
Q ss_pred HHH--------HHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 458 PEL--------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 458 ~ty--------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+ ...-.+|.+.|++..|++.|....+.
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 222 33346778899988888776666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00038 Score=60.60 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=44.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~k~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
|.-+...+++.....+++.+++.|+ .|.+.+|+.++.+.++.. .+-..+.++++|...+++|+..||+.+|
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3344444555555555555555555 555555555555555432 2334566777777777777777777777
Q ss_pred HHHHH
Q 005580 465 RVSVE 469 (690)
Q Consensus 465 ~~~~~ 469 (690)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00042 Score=75.46 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=95.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~ 435 (690)
+++.+....+++++..++.+.+.. ....-..|..++|+.|-+.|..++|+.+++.=...|+-||.+|||.||+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 667777777888899988888765 332333455699999999999999999999888889999999999999999999
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (690)
|++..|.+|..+|...+...+..|+..-+.+|.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999888888888888888887776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0068 Score=66.92 Aligned_cols=226 Identities=11% Similarity=-0.019 Sum_probs=149.4
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS-- 238 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~-- 238 (690)
-..++.+.|...++.+.+.. |+ +...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++..
T Consensus 164 l~~~~~~~Al~~l~~l~~~~--P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l 236 (409)
T TIGR00540 164 LAQNELHAARHGVDKLLEMA--PR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLL 236 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 36789999999999996542 21 2367889999999999999999999999998765333221222222210
Q ss_pred -cccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCC
Q 005580 239 -AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (690)
Q Consensus 239 -~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~ 316 (690)
... .....+....... ...+ ..+ +.-.+-.+... +...|+.++|.+++++..+. .
T Consensus 237 ~~~~------~~~~~~~L~~~~~-------~~p~--~~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~--~ 293 (409)
T TIGR00540 237 DEAM------ADEGIDGLLNWWK-------NQPR--HRRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKK--L 293 (409)
T ss_pred HHHH------HhcCHHHHHHHHH-------HCCH--HHhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhh--C
Confidence 000 0011112222221 1110 011 33446666667 89999999999999998875 3
Q ss_pred CCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHH
Q 005580 317 SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAV 393 (690)
Q Consensus 317 Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~L 393 (690)
||..... +-.+..-.....++.+.+.+.++...+. .|+. ....++
T Consensus 294 pd~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sL 341 (409)
T TIGR00540 294 GDDRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRAL 341 (409)
T ss_pred CCcccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHH
Confidence 4443210 0010222233456778888888877654 3433 455688
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
-..|.+.|++++|.+.|+........||...+..+-..+.+.|+.++|.+++++-
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8889999999999999996445455799999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00055 Score=59.64 Aligned_cols=78 Identities=8% Similarity=0.051 Sum_probs=68.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChHHHHHHHHHHHHCCCCCCcchHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~-~pd~~tyn~LI~~~~~~g--------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (690)
.|..+...+++.....+|+.++..|+ .|++.+||.++++.++.. ++-+.+.+++.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 55666677999999999999999999 999999999999998853 234678889999999999999999999
Q ss_pred HHHHHhc
Q 005580 429 LSVFCNN 435 (690)
Q Consensus 429 I~~~~k~ 435 (690)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988763
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.038 Score=58.41 Aligned_cols=282 Identities=11% Similarity=-0.017 Sum_probs=192.1
Q ss_pred hcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005580 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (690)
Q Consensus 163 ~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~ 242 (690)
.|++..|+++..+-.+. +..|- ..|-.-..+--+.||.+.|-.+..+.-+.--.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~------~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH------GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhc------CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 47899999998886433 33343 6788888888999999999999999887544566666766666666
Q ss_pred CcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcccc
Q 005580 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (690)
Q Consensus 243 ~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (690)
..|+.+.|..-.+.+ .+|.. .+...-...... |.+.|++.....++..|.+.|+--|...-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~p----r~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTP----RHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCc----CChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 567777777666421 12221 155557777777 99999999999999999999876554322
Q ss_pred c-hh----hhhhccc--cccCC---Cchhhhh-cCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHH
Q 005580 323 L-NS----QLLDGRS--NLERG---PDDQSRK-KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (690)
Q Consensus 323 ~-~~----~li~g~~--~~a~~---~~~~m~~-~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn 391 (690)
- .. .+++-.. ..+.. .+.+..+ ..-.|.++. + ++.-+.++|+.++|.++..+-.+++..|...+
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~--~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-- 300 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVV--A-YAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-- 300 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHH--H-HHHHHHHcCChHHHHHHHHHHHHhccChhHHH--
Confidence 1 00 1111111 11111 1122211 112233332 2 56778899999999999999999888777222
Q ss_pred HHHHHHHhcCChHHHHHHHHHHH-HCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMK-SLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (690)
.-.+.+-++...=.+..++-. ..+-.| -.+.+|=.-|.+++.+.+|.+.|+.-.+ ..|+..+|+-+-++|.+.
T Consensus 301 --~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 301 --LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred --HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 224455666666555555433 446666 4556666678899999999999995544 679999999999999999
Q ss_pred CChHHHHHHHHHHHHc
Q 005580 471 GKGDRVYYLLHKLRTS 486 (690)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (690)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999988876544
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=64.64 Aligned_cols=90 Identities=20% Similarity=0.333 Sum_probs=71.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC----------------ChHHHH
Q 005580 384 PMNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (690)
Q Consensus 384 ~pd~~tyn~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g----------------~~~~A~ 442 (690)
..|..+|..+|+.|.+ .|.++-...-++.|.+.|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 3467777777777765 3677777777888888888888888888888776522 346789
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
+|+++|+..|+.||..|+..|++.+.+.+..
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 9999999999999999999999999887754
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.011 Score=65.19 Aligned_cols=258 Identities=15% Similarity=0.085 Sum_probs=170.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~ 270 (690)
-+|..+-+.+-..|++.+|+.+|+.|.+. +| .+..|..+-.++. ..|+++.|.+.|. +.+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence 68888999999999999999999999874 44 4677888888888 7788889988884 2221
Q ss_pred ccCCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCC-ccccc-hhhhhhccc--cccCCCchhhhhc
Q 005580 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL-NSQLLDGRS--NLERGPDDQSRKK 345 (690)
Q Consensus 271 ~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd-~~ty~-~~~li~g~~--~~a~~~~~~m~~~ 345 (690)
-....-+.-+ ...|+++ .|++++|..-+.+-.+. .|. .+.|+ .+.+...-. ..|..-|.+.+
T Consensus 179 lnP~l~ca~s~lgnLlka---------~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-- 245 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLKA---------EGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-- 245 (966)
T ss_pred cCcchhhhhcchhHHHHh---------hcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh--
Confidence 1111111222 3334333 68888887777665443 232 12332 122222211 11222222222
Q ss_pred CCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-
Q 005580 346 DWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (690)
Q Consensus 346 g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~- 422 (690)
.+.|+- ..|-+ |=+.|...+.+++|...|.+... ..|+ .+.|..|-..|-..|.+|.|++.+++..+. .|+-
T Consensus 246 kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 246 KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 234442 12333 44555556666666666665543 4565 466777878888899999999999987664 5664
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 423 ~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..|+.|-.++-..|++.+|...+.....-. .--....+-|-..|...|++++|..+|..-.+-
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 679999999999999999999999877642 223456677888999999999999999887765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=64.72 Aligned_cols=213 Identities=14% Similarity=0.076 Sum_probs=142.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~---G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~e 268 (690)
.+...+-..|...|+++.|+.+|....+. +.-.+.-...+++..|+ .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a--------------------~---------- 249 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILA--------------------L---------- 249 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHH--------------------H----------
Confidence 56777999999999999999999988754 11111222222222222 0
Q ss_pred ccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCC
Q 005580 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (690)
Q Consensus 269 m~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (690)
. |...+++++|..+|+++..- ....+.. -.
T Consensus 250 ------------------~------y~~~~k~~eAv~ly~~AL~i-------------~e~~~G~-------------~h 279 (508)
T KOG1840|consen 250 ------------------V------YRSLGKYDEAVNLYEEALTI-------------REEVFGE-------------DH 279 (508)
T ss_pred ------------------H------HHHhccHHHHHHHHHHHHHH-------------HHHhcCC-------------CC
Confidence 1 66777888888888877641 1111110 00
Q ss_pred CC-hhhhHHHHHHHHHhccCHHHHHHHHHHHHh-----CCCC-CCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHC---C
Q 005580 349 ID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVP-MNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL---G 417 (690)
Q Consensus 349 pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~g~~-pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g 417 (690)
|. ..++++ |-..|++.|++++|...+++-.+ .|.. |.+. -++.+...|+..+++++|..++..-.+. -
T Consensus 280 ~~va~~l~n-La~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 280 PAVAATLNN-LAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred HHHHHHHHH-HHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 11 234455 66679999999888877766542 2322 3443 3677888899999999999998865432 1
Q ss_pred CCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 418 INPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 418 ~~Pd~----~ty~~lI~~~~k~g~~~~A~~l~~~M~~~------gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
..++. -+|+.|=..|-+.|+.++|.++|+..... +..+ .-..++-|=..|.+.+..++|.++|.+-..
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~ 437 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKD 437 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 22333 57899999999999999999999987643 2222 245677788888899999999999887543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.13 Score=55.56 Aligned_cols=218 Identities=12% Similarity=0.049 Sum_probs=164.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC--c
Q 005580 202 SKRGDVMGAIRLYDKAQREGI--KLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--N 277 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~--~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~--d 277 (690)
-...|+++|+.+|++..+..- --|..||+.+|..--. +..-.--|..++. +. -
T Consensus 273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~---------~skLs~LA~~v~~--------------idKyR 329 (559)
T KOG1155|consen 273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND---------KSKLSYLAQNVSN--------------IDKYR 329 (559)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh---------hHHHHHHHHHHHH--------------hccCC
Confidence 345799999999999997732 1478999999877652 1222224555552 21 3
Q ss_pred cchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHH
Q 005580 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (690)
Q Consensus 278 ~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (690)
..|+.++=+- |+-.++.++|...|+.-.+.+ |....-.++
T Consensus 330 ~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN----------------------------------p~~~~aWTL 369 (559)
T KOG1155|consen 330 PETCCIIANY------YSLRSEHEKAVMYFKRALKLN----------------------------------PKYLSAWTL 369 (559)
T ss_pred ccceeeehhH------HHHHHhHHHHHHHHHHHHhcC----------------------------------cchhHHHHH
Confidence 3455555555 777888999999999877653 111122232
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g 436 (690)
|=+-|..-.....|.+-++...+-. +.|--.|=.|=.+|.-.+...-|+-.|++... ++| |.+.|.+|=.+|.+.+
T Consensus 370 mGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 370 MGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLN 446 (559)
T ss_pred hhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhc
Confidence 4477888888889999998887743 45888999999999999999999999987655 455 6789999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
++++|.+.|......|-. +...|..|-+.|-+-++.++|...|.+-.+.
T Consensus 447 ~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 447 RLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred cHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999877633 5688999999999999999999988887763
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.06 Score=55.50 Aligned_cols=263 Identities=11% Similarity=0.035 Sum_probs=160.5
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~ 238 (690)
-+...|..+.|.++...+.+. |+.-...-....-.|=.-|..+|-++.|..+|..+.+.|-. -.-..-.|+..|-
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ- 152 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQ- 152 (389)
T ss_pred HHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHH-
Confidence 344788999999999998432 22211111123334556677889999999999999876521 2234556777777
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccch---hhccccccccccccccCCChhhHHHHHHHHHHcC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ---LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~t---yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (690)
....+++|.++-. ++....+-. ++.. |.-|-.. +....+++.|..++..-.+.
T Consensus 153 ---------~treW~KAId~A~-------~L~k~~~q~~~~eIAqfyCELAq~------~~~~~~~d~A~~~l~kAlqa- 209 (389)
T COG2956 153 ---------ATREWEKAIDVAE-------RLVKLGGQTYRVEIAQFYCELAQQ------ALASSDVDRARELLKKALQA- 209 (389)
T ss_pred ---------HhhHHHHHHHHHH-------HHHHcCCccchhHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHhh-
Confidence 6677888887763 333321111 1111 2222222 34456677777777665543
Q ss_pred CCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (690)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI 394 (690)
.|+.+--+ .++=+.+...|+++.|.+.++...+.+..--..+...|.
T Consensus 210 -~~~cvRAs--------------------------------i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 210 -DKKCVRAS--------------------------------IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred -Cccceehh--------------------------------hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 23333222 223356778899999999999888876544456778888
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH---cC
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---AG 471 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~g 471 (690)
.+|.+.|++++....+..+.+..-.++. -..+-.---...-.+.|.....+-.. -+|+...+..||+.-.. .|
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcccccc
Confidence 9999999999999988888776332222 22222222222334444444443333 25899999999887643 34
Q ss_pred ChHHHHHHHHHHHHc
Q 005580 472 KGDRVYYLLHKLRTS 486 (690)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (690)
...+-..+++.|...
T Consensus 333 ~~k~sL~~lr~mvge 347 (389)
T COG2956 333 RAKESLDLLRDMVGE 347 (389)
T ss_pred chhhhHHHHHHHHHH
Confidence 456667777777765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0031 Score=68.73 Aligned_cols=130 Identities=13% Similarity=0.152 Sum_probs=107.1
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 374 lf~~M~~---~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
++.+|.. .+.+-+.+....+++.+....+++++..++...... ...--..|..++|..|.+.|..+++.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555553 355668889999999999999999999999988866 33334456679999999999999999999999
Q ss_pred HhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH-HHHHHc
Q 005580 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFN 503 (690)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~ 503 (690)
...|+-||..|||.||+.+.+.|++..|.++..+|.....--.|.|+.. +...++
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999987744455557665 444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.027 Score=59.92 Aligned_cols=141 Identities=10% Similarity=0.071 Sum_probs=102.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-+-|--..+...|.+++-+... =++-|....+-|-+.|-+.|+-..|++.+-+--.. +.-|+.|.--|-..|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 33555556677777777755432 24557788999999999999999999887654333 45577777778888888888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHcc
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNS 504 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~ 504 (690)
.++|...|+... =+.|+..-|..||..| .+.|.+.+|+++++...++ -|..- ....+...|..
T Consensus 642 ~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk--fpedldclkflvri~~d 706 (840)
T KOG2003|consen 642 SEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK--FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CccchHHHHHHHHHhcc
Confidence 899999998753 3789999999998776 5689999999999998877 32221 33445555443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0024 Score=62.43 Aligned_cols=87 Identities=15% Similarity=0.104 Sum_probs=71.3
Q ss_pred ChhhhHHHHHHHHHh-----ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------------CChHHHHH
Q 005580 350 DNQDADEIRLSEDAK-----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFD 408 (690)
Q Consensus 350 d~~tyn~~lI~~~~k-----~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~----------------g~~~~A~~ 408 (690)
|..+|.. +|+.|.+ .|.++-...-+..|.+-|+.-|..+|+.||+.+=+. .+.+-|++
T Consensus 46 ~K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 46 DKATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred cHHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3444545 6666654 478888888999999999999999999999977552 23456999
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 409 MVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 409 l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
++++|+..|+.||..|+..|++.|.+.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 99999999999999999999999977765
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.011 Score=62.76 Aligned_cols=282 Identities=12% Similarity=0.106 Sum_probs=167.2
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV--ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~--lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~ 237 (690)
+-+.++.+.|.+++.-+..+..+... ..-|. ++.-+--..++..|...-+..... .-||.---.--
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~s------aaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nk 496 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTAS------AAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNK 496 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhH------HHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcC
Confidence 44667778888888777543322211 12222 222222234677777776665432 22222111111
Q ss_pred hcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCC
Q 005580 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (690)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~ 316 (690)
..-+ --.|++++|.+.+. |...+ +-. ....||+-+.+ -..|++++|+..|-.+..- .
T Consensus 497 gn~~-----f~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~i--l 554 (840)
T KOG2003|consen 497 GNIA-----FANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAI--L 554 (840)
T ss_pred Ccee-----eecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHH--H
Confidence 0000 03577888888774 33322 111 12226665543 4567788888877665421 1
Q ss_pred CCc--cccchhhhhhccc---cccCCCchhhhhcCCCCChh-hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH
Q 005580 317 SNG--HMKLNSQLLDGRS---NLERGPDDQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (690)
Q Consensus 317 Pd~--~ty~~~~li~g~~---~~a~~~~~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty 390 (690)
.|. +.| .+.+-|- +.+..+---|....+.|+-. ..+. |-+.|-+.|+-..|++.+-+--. -++-|..|.
T Consensus 555 ~nn~evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsyr-yfp~nie~i 629 (840)
T KOG2003|consen 555 LNNAEVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETI 629 (840)
T ss_pred HhhHHHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhccc-ccCcchHHH
Confidence 111 111 2222221 22222222344445555443 3444 78899999999999887654332 356688888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (690)
.-|-.-|....-+++|+..|+... =++|+..-|-.+|..|.+ .|+..+|++++.+..++ +.-|.....-|++.+..
T Consensus 630 ewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~d 706 (840)
T KOG2003|consen 630 EWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGD 706 (840)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcc
Confidence 889899999999999999998643 378999999999987765 69999999999998655 66788888888888777
Q ss_pred cCChHHHHHHHHHHH
Q 005580 470 AGKGDRVYYLLHKLR 484 (690)
Q Consensus 470 ~g~~~~A~~ll~~M~ 484 (690)
.|.- ++.++-+++.
T Consensus 707 lgl~-d~key~~kle 720 (840)
T KOG2003|consen 707 LGLK-DAKEYADKLE 720 (840)
T ss_pred ccch-hHHHHHHHHH
Confidence 7643 4444444443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0055 Score=64.13 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=85.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (690)
.|..|.+.++++.|.+.++.|.+. ..| .+..-|..++.. ...+.+|+-+|++|... +.++..+.|.+.-++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 667788888888888888888864 234 344445555443 23588888888887655 5577778888888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (690)
..|++++|.+++.+..... .-|..|..-+|......|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 8888888888888876543 22455666677777777777 6677888888876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.062 Score=55.35 Aligned_cols=244 Identities=11% Similarity=-0.001 Sum_probs=168.4
Q ss_pred CCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhH
Q 005580 180 GSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDT 258 (690)
Q Consensus 180 g~~~~~~~~p~~~ty-n~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~v 258 (690)
+.....++.-| .=| +.+=.+|-+-|.+.+|.+.|..-... .|-+.||--|-++|. +..+.+.|+.+
T Consensus 212 ~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~~ 278 (478)
T KOG1129|consen 212 KPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALLV 278 (478)
T ss_pred cccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHHH
Confidence 33334444445 334 45667888999999999999887765 466778888999999 77888999999
Q ss_pred hhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCC
Q 005580 259 FEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP 338 (690)
Q Consensus 259 f~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~ 338 (690)
|. +-.+ .++-.|||-.=+.- .+-..++.++|.+++++..+.. |+-+-
T Consensus 279 ~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~~nvE----------------- 325 (478)
T KOG1129|consen 279 IG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--PINVE----------------- 325 (478)
T ss_pred Hh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--Cccce-----------------
Confidence 95 2222 22334454221111 1445667788888888766542 11110
Q ss_pred chhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC
Q 005580 339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (690)
Q Consensus 339 ~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (690)
.. +.+-.+|.-.++++-|+..|+++..-|+. +...|+.+--+|.-.+++|-++--|......--
T Consensus 326 --------------ai-Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 326 --------------AI-ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred --------------ee-eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 00 11345666778999999999999999986 556677777778888999999999888776544
Q ss_pred CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 419 NPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 419 ~Pd~--~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|+. ..|-.|=....-.|++..|.+.|+-...++- -+...||-|--.-.+.|++++|..+++.-.+.
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 4443 2344444445567999999999998766542 24567777777778999999999999987766
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.14 Score=59.27 Aligned_cols=297 Identities=12% Similarity=0.030 Sum_probs=179.2
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~ 239 (690)
..+.+++..|.-.|.+-++....... ..|+- +..|-+.|+...|..-|.+|....-+.|..-+-.+|...++.
T Consensus 217 s~~~~~i~qA~~cy~rAI~~~p~n~~------~~~er-s~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 217 SEQLGNINQARYCYSRAIQANPSNWE------LIYER-SSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHhcccHHHHHHHHHHHHhcCCcchH------HHHHH-HHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 34556666677777766443211111 33332 456778899999999998887653233333344444443321
Q ss_pred ccCCcccCCCCchhhHHhHhhhhcccccccccc-CCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCC-
Q 005580 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS- 317 (690)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~-~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P- 317 (690)
- -..+..+.|...+. .-... .+....-.+|++... |.+...++.|......+..+...|
T Consensus 290 ~------~~~~~~e~a~~~le-------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~d 350 (895)
T KOG2076|consen 290 F------ITHNERERAAKALE-------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEKD 350 (895)
T ss_pred H------HHhhHHHHHHHHHH-------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCCC
Confidence 1 03444577777774 22221 111144457888888 999999999999999888843333
Q ss_pred ---------------------Cccccchh--hhhhccc-----cccCCCchhhhhcCCCC--ChhhhHHHHHHHHHhccC
Q 005580 318 ---------------------NGHMKLNS--QLLDGRS-----NLERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKYA 367 (690)
Q Consensus 318 ---------------------d~~ty~~~--~li~g~~-----~~a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g~ 367 (690)
+..+|... .+.-++. .....+..-.....+.| ++--|-. +.++|...|+
T Consensus 351 ~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~~ 429 (895)
T KOG2076|consen 351 DSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIGK 429 (895)
T ss_pred hhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhccc
Confidence 33333200 1111111 11111333333333222 2233445 6788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHH
Q 005580 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEE 446 (690)
Q Consensus 368 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~~l~~ 446 (690)
+.+|+++|..+...-..-+.+.|--+-++|-..|..++|.+.++..... .|+. -.=-+|-.-+-+.|+.|+|.+.++
T Consensus 430 ~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 430 YKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLE 507 (895)
T ss_pred HHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHh
Confidence 9999999999988766667888888999999999999999998887654 2332 222334445667899999999888
Q ss_pred HHH--------hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 447 HML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 447 ~M~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.|. ..+..|+...---..+.|...|+.++=...-..|..
T Consensus 508 ~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 508 QIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred cccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 864 234455565555666777778887775555555544
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.2 Score=53.72 Aligned_cols=230 Identities=11% Similarity=-0.036 Sum_probs=131.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC-cc
Q 005580 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NN 278 (690)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~ 278 (690)
.+...|++++|.+++++..... +-|...+.. ...+...+ ...+....+...+. . ... ..+ ..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~~-~~~~~~ 114 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WAP-ENPDYW 114 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cCc-CCCCcH
Confidence 4567789999999999987652 333334442 11111100 03455556666653 1 110 111 11
Q ss_pred chhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHH
Q 005580 279 GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (690)
Q Consensus 279 ~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~l 358 (690)
.....+-.. +...|++++|...+++..+.. |+..... .. +
T Consensus 115 ~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~-------------------------------~~-l 154 (355)
T cd05804 115 YLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV-------------------------------HA-V 154 (355)
T ss_pred HHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH-------------------------------HH-H
Confidence 223333344 678899999999999988763 5543221 12 5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcchH-H--HHHHH
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PALSV 431 (690)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~-~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-~--~lI~~ 431 (690)
-..|...|++++|...+++...... .|+. ..|-.+...+...|+.++|..++++...... .+..... + .++.-
T Consensus 155 a~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (355)
T cd05804 155 AHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWR 234 (355)
T ss_pred HHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHH
Confidence 5777888999999999988776432 2333 3466788888899999999999988754321 1112111 1 33344
Q ss_pred HHhcCChHHHHHH--HHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 432 FCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 432 ~~k~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+-..|..+.+.+. ......... ............++...|+.++|..++..+...
T Consensus 235 ~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 235 LELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 4445544444433 222111111 111122225666778888899999999988764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.11 Score=54.68 Aligned_cols=218 Identities=11% Similarity=-0.042 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccch
Q 005580 204 RGDVMGAIRLYDKAQREG-IKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (690)
Q Consensus 204 ~g~~~~A~~lf~~M~~~G-~~pd~--~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~t 280 (690)
.+..+.++.-+.++.... +.|+. ..|..+=..+. ..|+.++|...|. +.... .-.+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 456677888888887532 33332 33444444455 6789999999885 33321 2225566
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHH
Q 005580 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (690)
Q Consensus 281 yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (690)
|+.+-.. +...|++++|...|+...+. .|+- ...|.. +-.
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~ 140 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGI 140 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHH
Confidence 8888778 99999999999999988764 3432 123334 556
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
.+...|+.++|.+.|+...+.. |+..........+...++.++|.+.|.+.... ..|+...+ .+. ....|+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCH
Confidence 6778899999999999988753 44322222222344568899999999765433 33443322 222 233566655
Q ss_pred HHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+ +.++.+.+. .. .| ....|..|-..+.+.|+.++|...|++-...
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 355555432 11 11 2357888889999999999999999999876
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.082 Score=59.29 Aligned_cols=235 Identities=9% Similarity=-0.015 Sum_probs=152.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccccc--CCCCccchhhc
Q 005580 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS--RDMDNNGQLDY 283 (690)
Q Consensus 206 ~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~--~gv~d~~tyn~ 283 (690)
+..+|+.+|..... .+.-+.....-+=.+|. ..++.++|+++|. ...+. ..+++.-.|++
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayF----------El~~Y~~a~~~F~-------~~r~~~p~rv~~meiyST 395 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYF----------ELIEYDQAERIFS-------LVRRIEPYRVKGMEIYST 395 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHH----------HHHHHHHHHHHHH-------HHHhhccccccchhHHHH
Confidence 35788888888433 23333344455555666 5677888888885 33322 23346666777
Q ss_pred cccccccccccccCCCh-hhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHH
Q 005580 284 GSSPMIDKLESNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (690)
Q Consensus 284 LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (690)
.+.- +-+.=.+ --|..+.+.+ .. ...+|-+ +=+.|
T Consensus 396 ~LWH------Lq~~v~Ls~Laq~Li~~~--------------------------------~~-----sPesWca-~GNcf 431 (638)
T KOG1126|consen 396 TLWH------LQDEVALSYLAQDLIDTD--------------------------------PN-----SPESWCA-LGNCF 431 (638)
T ss_pred HHHH------HHhhHHHHHHHHHHHhhC--------------------------------CC-----CcHHHHH-hcchh
Confidence 6655 1110000 0011111111 11 2235555 76888
Q ss_pred HhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHH---HHHHhcCCh
Q 005580 363 AKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL---SVFCNNGDV 438 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI---~~~~k~g~~ 438 (690)
.-.++.+.|++.|++-.+ +.| ...+|+-+=+-+....++|.|...|+.- +..|.+.||+.- -.|.|.++.
T Consensus 432 SLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~~~~rhYnAwYGlG~vy~Kqek~ 505 (638)
T KOG1126|consen 432 SLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LGVDPRHYNAWYGLGTVYLKQEKL 505 (638)
T ss_pred hhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhh----hcCCchhhHHHHhhhhheeccchh
Confidence 899999999999998876 345 6788888877788888999999999764 445778887754 467889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHcchHHHHhh
Q 005580 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLG 511 (690)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~ 511 (690)
+.|.-.|+...+-+ .-+.+....+-..+-+.|+.|+|++++++-..- .+... -|....-++..++..+|.
T Consensus 506 e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 506 EFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred hHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHHHHHHHHhhcchHHHH
Confidence 99999999876643 125566666777778899999999999988765 33322 455555566666655555
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.11 Score=55.03 Aligned_cols=224 Identities=12% Similarity=0.021 Sum_probs=151.4
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNVL 232 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~-------~tyn~L 232 (690)
....++...|..=.+.+.+.+.. +....+....+|.+.|++...+.+...|.+.|+--|. .+|+.+
T Consensus 163 ll~~~d~~aA~~~v~~ll~~~pr-------~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~gl 235 (400)
T COG3071 163 LLNRRDYPAARENVDQLLEMTPR-------HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGL 235 (400)
T ss_pred HHhCCCchhHHHHHHHHHHhCcC-------ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHH
Confidence 33556677777777776544321 2278999999999999999999999999999976554 567888
Q ss_pred HHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHH
Q 005580 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (690)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (690)
+.-+.... .+..+...+..++++.+.+ .-.-.+++.- +.+.|..++|.++..+-.+
T Consensus 236 L~q~~~~~-------------~~~gL~~~W~~~pr~lr~~-----p~l~~~~a~~------li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 236 LQQARDDN-------------GSEGLKTWWKNQPRKLRND-----PELVVAYAER------LIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred HHHHhccc-------------cchHHHHHHHhccHHhhcC-----hhHHHHHHHH------HHHcCChHHHHHHHHHHHH
Confidence 87766322 2222333332222222221 1111222222 7888999999999988888
Q ss_pred cCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHH-hCCCCCCHHHHH
Q 005580 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC-LDEVPMNEASLT 391 (690)
Q Consensus 313 ~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~-~~g~~pd~~tyn 391 (690)
++-.|...++ -++.+-++.+.=.+..++-. ..+..| -.+.
T Consensus 292 ~~~D~~L~~~-------------------------------------~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~ 332 (400)
T COG3071 292 RQWDPRLCRL-------------------------------------IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLS 332 (400)
T ss_pred hccChhHHHH-------------------------------------HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHH
Confidence 7766664333 23445555555555555433 344545 6778
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~p 455 (690)
+|=..|.+.+.|.+|.+.|+.-. ...|+..+|+-+-++|.+.|+.++|.+++++-...-..|
T Consensus 333 tLG~L~~k~~~w~kA~~~leaAl--~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 333 TLGRLALKNKLWGKASEALEAAL--KLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH--hcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 88888999999999999999544 457899999999999999999999999998865433333
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.059 Score=58.60 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=97.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
|+..+...++++.|.++|+++.+.. |++. ..|++.+...++-.+|.+++++..+. .+-|......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEVA--VLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcHH--HHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 4455666789999999999999875 6644 45788888889999999999998865 22244444555566889999
Q ss_pred hHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 438 VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+.|.++.+++.. +.|+. .+|..|..+|.+.|+++.|+..++.+.-.
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999987 45655 59999999999999999999999887644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.087 Score=61.42 Aligned_cols=216 Identities=10% Similarity=0.093 Sum_probs=114.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhcc
Q 005580 205 GDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (690)
Q Consensus 205 g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~L 284 (690)
+.++.|.++-++.. .+..|+.|-.+=- ..|.+.+|.+-|- .-.|...|--+
T Consensus 1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi-------------kadDps~y~eV 1139 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI-------------KADDPSNYLEV 1139 (1666)
T ss_pred hhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-------------hcCCcHHHHHH
Confidence 45555555544432 3456666666655 5677888887773 22366668888
Q ss_pred ccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHh
Q 005580 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (690)
Q Consensus 285 I~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (690)
|+. ..+.|.+++-.+.+..-.++.-.|.+-+- ||-+|++..+ +.++..--..||+...-. +=+-|..
T Consensus 1140 i~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e----Li~AyAkt~r--l~elE~fi~gpN~A~i~~-vGdrcf~ 1206 (1666)
T KOG0985|consen 1140 IDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE----LIFAYAKTNR--LTELEEFIAGPNVANIQQ-VGDRCFE 1206 (1666)
T ss_pred HHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH----HHHHHHHhch--HHHHHHHhcCCCchhHHH-HhHHHhh
Confidence 888 88999999998888766666666665442 3333321111 011111111122211111 1122233
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l 444 (690)
.|.++.|.-+|. ++.-|.-|..-+...|++..|.+--++. -++.||--+-.+|...+.+..|
T Consensus 1207 ~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlA--- 1268 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLA--- 1268 (1666)
T ss_pred hhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHH---
Confidence 333333333332 2223444444444445544444433321 2445666666666555554433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
.|..-.+........-||..|-..|.+++...+++.
T Consensus 1269 --QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1269 --QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred --HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 243334455566677788888888888887777654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.079 Score=53.39 Aligned_cols=160 Identities=13% Similarity=0.052 Sum_probs=112.2
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+.+.|++++|...|++.... .|+.... ...+.. +-..|-+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~--~p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESR--YPFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 77889999999999988664 2332110 011223 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCCcc-hH-----------------
Q 005580 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SY----------------- 425 (690)
Q Consensus 374 lf~~M~~~g~~pd~~--tyn~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~Pd~~-ty----------------- 425 (690)
.|+++.+........ ++..+-.++.+. |+.++|.+.|+.+... .|+.. .+
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998754322222 333333444433 7789999999998765 34432 11
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 426 GPALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 426 ~~lI~~~~k~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-.+-..+.+.|+.++|...+++..+.. -......+..+...+.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 123456778899999999999987652 1224578889999999999999999999998876
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.32 Score=52.16 Aligned_cols=228 Identities=13% Similarity=0.016 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~ 270 (690)
..|..+-..+...|+.+.|...+....... ..++...... +.+..-. ..|+.++|...+. +..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~-~~a~~~~--------~~g~~~~A~~~~~-------~~l 70 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAH-VEALSAW--------IAGDLPKALALLE-------QLL 70 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHH-HHHHHHH--------HcCCHHHHHHHHH-------HHH
Confidence 345555555666678888777776655332 2234333322 2222211 4688999999884 433
Q ss_pred ccCCCC-ccchhhc---cccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcC
Q 005580 271 DSRDMD-NNGQLDY---GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (690)
Q Consensus 271 ~~~gv~-d~~tyn~---LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g 346 (690)
+. .+ |...++. +... ....+..+.+.+.+.. .....|+...+.
T Consensus 71 ~~--~P~~~~a~~~~~~~~~~------~~~~~~~~~~~~~l~~--~~~~~~~~~~~~----------------------- 117 (355)
T cd05804 71 DD--YPRDLLALKLHLGAFGL------GDFSGMRDHVARVLPL--WAPENPDYWYLL----------------------- 117 (355)
T ss_pred HH--CCCcHHHHHHhHHHHHh------cccccCchhHHHHHhc--cCcCCCCcHHHH-----------------------
Confidence 32 23 4444442 1111 2234555666666554 222333332221
Q ss_pred CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCc--c
Q 005580 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRL--R 423 (690)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~--~ 423 (690)
.++-..+...|++++|.+.+++..+.. +.+...+..+-..|...|++++|..++++..... ..|+. .
T Consensus 118 ---------~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~ 187 (355)
T cd05804 118 ---------GMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGH 187 (355)
T ss_pred ---------HHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHH
Confidence 113356778999999999999999864 3456778899999999999999999999877642 12343 3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHH-H--HHHHHHHHcCChHHHHH
Q 005580 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPEL-E--ALLRVSVEAGKGDRVYY 478 (690)
Q Consensus 424 ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv-~pd~~ty-~--~Li~~~~~~g~~~~A~~ 478 (690)
.|..+...+...|+.++|..++++...... .+..... + .++.-+...|..+.+.+
T Consensus 188 ~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~ 246 (355)
T cd05804 188 NWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDR 246 (355)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHH
Confidence 466788889999999999999999854332 2222222 2 33444455554444333
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.2 Score=54.56 Aligned_cols=125 Identities=13% Similarity=0.033 Sum_probs=100.3
Q ss_pred CCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHH
Q 005580 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (690)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (690)
.||.+.|.....+-+.+.++..+|.+.|+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|.
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~ 412 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWD 412 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHH
Confidence 5677777776788899999999999999998875 465 566667778899999999999999887655 456788899
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 427 ~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
.|-.+|...|+..+|..-..|+ |.-.|++++|...+..-++....-.|+
T Consensus 413 ~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 413 LLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 9999999999998888777665 467799999999998888874444555
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.42 Score=55.58 Aligned_cols=82 Identities=9% Similarity=0.055 Sum_probs=56.7
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCS 237 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~ 237 (690)
.+.. |+.++|.+++.+.+.+.. -+...|-+|=..|-+.|+.++++..+- ....+.| |..-|-.+-....
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcCCCChHHHHHHHHHHH
Confidence 4444 999999999999976522 233789999999999999999987764 3333443 4455555554444
Q ss_pred hcccCCcccCCCCchhhHHhHhh
Q 005580 238 SAAVGVVKPAKSGSGMRTLDTFE 260 (690)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~vf~ 260 (690)
..|.+++|.-.|.
T Consensus 219 ----------~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 219 ----------QLGNINQARYCYS 231 (895)
T ss_pred ----------hcccHHHHHHHHH
Confidence 5677777777764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.089 Score=55.11 Aligned_cols=136 Identities=13% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----c
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k----~ 435 (690)
..+...|++++|+++++.- .+.-.....+..|.+.++++.|.+.++.|.+.. .| .+-.-|..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCc
Confidence 4567789999999888642 356677788999999999999999999998763 33 344445554443 3
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-hh-HHHHHHHHHcchHH
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PS-TADVIAKWFNSKEA 507 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~-p~-t~~~I~~~~~~~~~ 507 (690)
..+.+|..+|+++.+. ..++..+.|.+..+....|++++|.+++.+-... .+. |+ ..|.|......|+.
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHHHHHTT-T
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHhCCC
Confidence 4699999999998665 6789999999999999999999999999997655 332 33 35655544444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.13 Score=46.75 Aligned_cols=90 Identities=12% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~ 438 (690)
...+.+.|+.++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++...+.+ ..+...|..+-..+...|+.
T Consensus 24 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 24 AYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCH
Confidence 344555556666666665555432 2244555555555555566666666555544432 12334444444455555555
Q ss_pred HHHHHHHHHHHh
Q 005580 439 DKACSVEEHMLE 450 (690)
Q Consensus 439 ~~A~~l~~~M~~ 450 (690)
++|...|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (135)
T TIGR02552 102 ESALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHHH
Confidence 555555555444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.83 Score=53.69 Aligned_cols=337 Identities=14% Similarity=0.055 Sum_probs=204.5
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-------H
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-------H 228 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~---G~~pd~~-------t 228 (690)
.+-..++...++.+|......-. ...+. +.....|.+=......|++..|...|...+.. -..+|.. -
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L~-~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDILE-SKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHHH-HcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 44455666666666654321100 11112 23367888888888999999999999998754 2334442 2
Q ss_pred HHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccC-------CChh
Q 005580 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YRFD 301 (690)
Q Consensus 229 yn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~-------g~~~ 301 (690)
|| |..|.. ..++.+.|...+. ++... |-.-|++ |.+. +.+.
T Consensus 500 YN--larl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 500 YN--LARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDKNNLY 547 (1018)
T ss_pred HH--HHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhccCcH
Confidence 33 222221 3456777888875 22211 2223344 4333 4566
Q ss_pred hHHHHHHHHHH-cCCCCCccccchhhhh--hccccccCCCchhhhhcCC-CCChhhhHHHHH-H----HHH--------h
Q 005580 302 DLDSTFNEKEN-LGQFSNGHMKLNSQLL--DGRSNLERGPDDQSRKKDW-SIDNQDADEIRL-S----EDA--------K 364 (690)
Q Consensus 302 ~A~~lf~eM~~-~g~~Pd~~ty~~~~li--~g~~~~a~~~~~~m~~~g~-~pd~~tyn~~lI-~----~~~--------k 364 (690)
+|..++++... ...-|++.+|- |-+- .--...|..-|..+..+-. .+|. |..+-+ + .+- .
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~-G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~--YsliaLGN~~~~~l~~~~rn~ek~ 624 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLL-GNLHLKKSEWKPAKKKFETILKKTSTKTDA--YSLIALGNVYIQALHNPSRNPEKE 624 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHH-HHHHHhhhhhcccccHHHHHHhhhccCCch--hHHHHhhHHHHHHhcccccChHHH
Confidence 77777776544 34567777663 1011 1111334443333333211 1343 322111 1 111 2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSV 444 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l 444 (690)
.+..++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -+.-+|-.+-++|...|++..|.++
T Consensus 625 kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqm 702 (1018)
T KOG2002|consen 625 KKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQM 702 (1018)
T ss_pred HHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHH
Confidence 345688999999887653 34677778888889999999999999999998754 3445677889999999999999999
Q ss_pred HHHHHh-CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh--HHHHHHHHHcchHHHHhhccc------c
Q 005580 445 EEHMLE-HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKK------W 515 (690)
Q Consensus 445 ~~~M~~-~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~~------~ 515 (690)
|+.-.+ ..-.-+..+.+.|-+++-++|.+.+|.+.+-.-... .|... .+|+....++........... .
T Consensus 703 Ye~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~ 780 (1018)
T KOG2002|consen 703 YENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLE 780 (1018)
T ss_pred HHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 987554 455568888999999999999999999988777766 44444 355533333332222222111 1
Q ss_pred hhhHHHHHhhhcCCccccccccCCC
Q 005580 516 NESLIKDTMENKGGGWHGLGWLGKG 540 (690)
Q Consensus 516 ~~~~v~ea~~~~g~~~~~M~~~g~~ 540 (690)
....+++|++ +|.+|...+-.
T Consensus 781 a~~~le~a~r----~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 781 AVKELEEARR----LFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHH----HHHHHHhcCCC
Confidence 2356677777 88888766655
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.097 Score=54.61 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=101.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (690)
+|-. ++...-+.+.++.|..+|.+..+.+ +..++....++|.-+ ..++.+.|..+|+...+. +.-+..-|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555 7788888889999999999998654 455666666666443 356778899999998876 45577778899999
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 432 FCNNGDVDKACSVEEHMLEHGVYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 432 ~~k~g~~~~A~~l~~~M~~~gv~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+.|+.+.|..+|+..... +.++. ..|...|+.=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999866 33332 49999999999999999999999999987
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.073 Score=43.34 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=39.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~ 439 (690)
..+...|++++|..+|++..+.. +.+...+..+...+...|++++|.+.|+...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34445555555555555554432 1122344444445555555555555555444332 112234444444444445555
Q ss_pred HHHHHHHHH
Q 005580 440 KACSVEEHM 448 (690)
Q Consensus 440 ~A~~l~~~M 448 (690)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 555444443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.48 Score=57.52 Aligned_cols=191 Identities=12% Similarity=0.030 Sum_probs=139.6
Q ss_pred CCCchhhHHhHhhhhccccccccccCCCC----ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccc
Q 005580 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (690)
Q Consensus 248 k~g~~~~A~~vf~~~~~~s~em~~~~gv~----d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (690)
..+.++.|+.++. +....-.+. -.-.|-++++. -.-.|.-+...++|++..+..
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---------
Confidence 5677888888885 322211222 12236666666 555565666777777765531
Q ss_pred hhhhhhccccccCCCchhhhhcCCCCChh-hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 005580 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (690)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~ 402 (690)
|.. .|-. |..-|.+.+..++|-++|+.|.++ ..-....|...++.+.+..+
T Consensus 1528 --------------------------d~~~V~~~-L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1528 --------------------------DAYTVHLK-LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred --------------------------chHHHHHH-HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccH
Confidence 222 3444 889999999999999999999875 22466789999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005580 403 GDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (690)
Q Consensus 403 ~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (690)
-+.|..++.+..+. .|. +..-.-.+..-.+.|+.+.+..+|+.....- .--...|+..|+.=.+.|+.+.+..+
T Consensus 1580 ~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1580 AEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999876543 354 2222333444467899999999999987653 22457899999999999999999999
Q ss_pred HHHHHHcCCCCChh
Q 005580 480 LHKLRTSVRKVSPS 493 (690)
Q Consensus 480 l~~M~~~~~g~~p~ 493 (690)
|++.... ..+|-
T Consensus 1657 feRvi~l--~l~~k 1668 (1710)
T KOG1070|consen 1657 FERVIEL--KLSIK 1668 (1710)
T ss_pred HHHHHhc--CCChh
Confidence 9999999 77776
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.14 Score=47.73 Aligned_cols=91 Identities=10% Similarity=-0.100 Sum_probs=39.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
-..+...|++++|...|+...... ..+...|..+-..+.+.|+.++|...|+...... ..+...+..+-.++.+.|+.
T Consensus 31 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 31 GYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCH
Confidence 334444444444444444443331 1133334444444444445555554444444321 12334444444444444555
Q ss_pred HHHHHHHHHHHHc
Q 005580 474 DRVYYLLHKLRTS 486 (690)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (690)
++|...|+.-...
T Consensus 109 ~eAi~~~~~Al~~ 121 (144)
T PRK15359 109 GLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHh
Confidence 5555554444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.18 Score=52.62 Aligned_cols=225 Identities=15% Similarity=0.095 Sum_probs=129.6
Q ss_pred CcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCc
Q 005580 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (690)
Q Consensus 165 ~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~ 244 (690)
+-+.|++|+-.+. ...|. .-.|.+| -|-+.+++.+|..+..++. -..|- --++++...+..| .
T Consensus 269 ngEgALqVLP~L~--------~~IPE-ARlNL~i-YyL~q~dVqeA~~L~Kdl~--PttP~----EyilKgvv~aalG-Q 331 (557)
T KOG3785|consen 269 NGEGALQVLPSLM--------KHIPE-ARLNLII-YYLNQNDVQEAISLCKDLD--PTTPY----EYILKGVVFAALG-Q 331 (557)
T ss_pred CCccHHHhchHHH--------hhChH-hhhhhee-eecccccHHHHHHHHhhcC--CCChH----HHHHHHHHHHHhh-h
Confidence 3445666665542 23344 3444444 4678899999999887653 12333 3344444432211 0
Q ss_pred ccCCCCchhhHHhHhhhhccccccccccCCCC-ccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcccc
Q 005580 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (690)
Q Consensus 245 ~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~-d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (690)
.-+....+.-|...|. |...++.. |.+. --++-+. +--..++|+..-.++..+.-=.--|.+.|
T Consensus 332 e~gSreHlKiAqqffq--------lVG~Sa~ecDTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQ--------LVGESALECDTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hcCcHHHHHHHHHHHH--------HhcccccccccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 0112233556777773 54443444 4433 2222222 33334445555444444433222333333
Q ss_pred chhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcC
Q 005580 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMG 401 (690)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~ty-n~LI~~~~~~g 401 (690)
| +-.+++-.|...+|.++|-......++ |..+| ..|.++|.+++
T Consensus 398 N----------------------------------~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 398 N----------------------------------LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred H----------------------------------HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 2 668889999999999999777655444 55566 45567889999
Q ss_pred ChHHHHHHHHHHHHCCCCCCcchHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 005580 402 DGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (690)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (690)
+++.|++++-.|... .+..+.--+| +-|-+++++=-|-+.|++++.. .|+..-|
T Consensus 443 kP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 999999988665432 3444444444 5677889998888899888764 4555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.14 Score=58.03 Aligned_cols=225 Identities=8% Similarity=0.002 Sum_probs=155.7
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~ 238 (690)
.+.+.|-..+|..+|+.+ ..|.-+|.+|+..|+-.+|..+..+-.+ -+||...|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 455778888999999999 8899999999999999999988887776 5789999998888776
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcC-CCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG-QFS 317 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g-~~P 317 (690)
.---+++|.++++ ..+.+. -..++-+ ....+++.++.+.|+.-.+.. ..+
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 3344778888885 111110 0011111 234678888888886533221 111
Q ss_pred CccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 005580 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRM 396 (690)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~ 396 (690)
+ +|-. +=.+..+.++++.|.+-|..-.. ..||. -.||.+-.+
T Consensus 520 ~----------------------------------~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 G----------------------------------TWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred h----------------------------------HHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 1 1212 21234467788888888887664 45665 569999999
Q ss_pred HHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPELEALLRVSV 468 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~ 468 (690)
|.+.++-.+|+..+.+-.+.+ .-+...|-.-+....+.|.+++|.+.+..|.+... ..|..+...++....
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999999999988877 44566677777778899999999999988764311 124445555554443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.2 Score=44.30 Aligned_cols=196 Identities=13% Similarity=-0.016 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccccc
Q 005580 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (690)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~ 272 (690)
+.--|=-+|-+.|+...|..-+++..+.. +-+..+|..+-..|. +.|..+.|.+-|. .-+...
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl~ 99 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSLA 99 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhcC
Confidence 34445567899999999999999998753 223456677777777 7788888888874 112111
Q ss_pred CCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCCh
Q 005580 273 RDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (690)
Q Consensus 273 ~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (690)
.+-.|+.- |.+. +|..|++++|...|++-... |+-.+- .
T Consensus 100 p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~----------------------------s 139 (250)
T COG3063 100 PNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEP----------------------------S 139 (250)
T ss_pred CCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCc----------------------------c
Confidence 11112221 3333 56666666666666655432 111111 0
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 005580 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (690)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (690)
.||-+ +.-+..+.|+.+.|.+.|++-.+.... ...+.-.+.+...+.|+.-.|...++.....|. ++..+.-..|.-
T Consensus 140 ~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iri 216 (250)
T COG3063 140 DTLEN-LGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRI 216 (250)
T ss_pred hhhhh-hHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHH
Confidence 12223 222333556666666666655543211 123344455555555666666655555554443 555555555555
Q ss_pred HHhcCChHHHHHHHHHH
Q 005580 432 FCNNGDVDKACSVEEHM 448 (690)
Q Consensus 432 ~~k~g~~~~A~~l~~~M 448 (690)
--+.|+.+.|-+.=..+
T Consensus 217 ak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 217 AKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHhccHHHHHHHHHHH
Confidence 55555555555444433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.1 Score=52.47 Aligned_cols=137 Identities=15% Similarity=0.145 Sum_probs=102.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----c
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k----~ 435 (690)
.-|++.|++++|++..... -..+....| +..+.+..+++-|.+.++.|.+- -+-.|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~----~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLG----ENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhcc----chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 4588999999999988762 223333333 33456778899999999999876 356677766666654 4
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHcchHH
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEA 507 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~~~ 507 (690)
+.+..|+-+|++|-++ ..|+..+.|-+..++...|++++|..++++...+... .|+ ..|.|......|+.
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKD 257 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCC
Confidence 6799999999999664 7899999999999999999999999999999887333 245 45666555444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=95.98 E-value=1.3 Score=46.44 Aligned_cols=230 Identities=12% Similarity=-0.020 Sum_probs=146.3
Q ss_pred cCcchHhHHHHHHHhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 164 TNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 164 ~~~~~A~~vf~~m~~~g~~~~~~~~p~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
...+.+..-+.++..... ..|+ ...|..+=..+.+.|+.++|+..|++..+.. +-+...|+.+=..+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~-----~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~---- 109 (296)
T PRK11189 40 LQQEVILARLNQILASRD-----LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT---- 109 (296)
T ss_pred hHHHHHHHHHHHHHcccc-----CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH----
Confidence 344556666666643321 1222 2345566667889999999999999988753 235778888888888
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (690)
..|+.++|...|+ ...+. .-.+...|..+-.. +...|++++|.+.|+.-.+. .|+...
T Consensus 110 ------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~--~P~~~~ 167 (296)
T PRK11189 110 ------QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQD--DPNDPY 167 (296)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence 8899999999996 22221 11144556666666 78899999999999987764 233211
Q ss_pred cchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 005580 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (690)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g 401 (690)
. .+....+...++.++|.+.|.+.... ..|+...+ .+ .....|
T Consensus 168 ~---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~--~~~~lg 210 (296)
T PRK11189 168 R---------------------------------ALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NI--VEFYLG 210 (296)
T ss_pred H---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HH--HHHHcc
Confidence 1 10112234567899999999775543 23443222 22 223356
Q ss_pred ChHHHHHHHHHHHHC-CC----CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 402 DGDMAFDMVKRMKSL-GI----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 402 ~~~~A~~l~~~M~~~-g~----~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
+..++ +.+..+.+. .. .| ....|.-+-..+.+.|+.++|...|++..+.+ .||-+.+...+
T Consensus 211 ~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~ 277 (296)
T PRK11189 211 KISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYAL 277 (296)
T ss_pred CCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHH
Confidence 66555 355555432 11 11 22468888888999999999999999988765 34666665543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.2 Score=46.59 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=86.2
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc--chHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFC 433 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~ 433 (690)
++..+ ..++...+.+.++.+....-.-. ....=.+-..+...|++++|...|+......-.|+. ...-.|-..+.
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 45555 48888999999999988642211 122233446788899999999999999887633322 23334566777
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
..|+.++|+..++....... ....+..+=+.|.+.|+.++|...|+.
T Consensus 97 ~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 97 QQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999977543333 344566677888999999999998875
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.92 E-value=2.8 Score=47.45 Aligned_cols=292 Identities=10% Similarity=0.020 Sum_probs=172.9
Q ss_pred hhHHHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005580 156 DNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (690)
Q Consensus 156 ~~~~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~t-yn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~ 234 (690)
.++.+.+.+..++|.+.+..-+.+ .-|-+. --+--+.+.+.+++++|..+|..+... .||.+-|.-.+.
T Consensus 191 ~n~i~~E~g~~q~ale~L~~~e~~--------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 191 QNQILIEAGSLQKALEHLLDNEKQ--------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHcccHHHHHHHHHhhhhH--------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHH
Confidence 455666888888888877765221 111122 234455678889999999999999875 488888887766
Q ss_pred HHHhcccCCcccCCCCchhhHH-hHhhhhccccccccccCCCCccchhhccccccccccccccCCCh-hhHHHHHHHHHH
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKEN 312 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~-~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~-~~A~~lf~eM~~ 312 (690)
.+.- +.-+..++. .+|... ++.-... .++-...-+ ......+ +...+++..+.+
T Consensus 261 ~~lg---------k~~d~~~~lk~ly~~l---s~~y~r~-e~p~Rlpls-----------vl~~eel~~~vdkyL~~~l~ 316 (700)
T KOG1156|consen 261 KALG---------KIKDMLEALKALYAIL---SEKYPRH-ECPRRLPLS-----------VLNGEELKEIVDKYLRPLLS 316 (700)
T ss_pred HHHH---------HHhhhHHHHHHHHHHH---hhcCccc-ccchhccHH-----------HhCcchhHHHHHHHHHHHhh
Confidence 6551 112223333 444311 0111110 010000011 1111222 445566777888
Q ss_pred cCCC---CCccccc--------hhhhhhccc--cccCCCchhhhhcCC-CCChhhhHH-HHHHHHHhccCHHHHHHHHHH
Q 005580 313 LGQF---SNGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDW-SIDNQDADE-IRLSEDAKKYAFQRGFEIYEK 377 (690)
Q Consensus 313 ~g~~---Pd~~ty~--------~~~li~g~~--~~a~~~~~~m~~~g~-~pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~ 377 (690)
+|+. +|..++. ...++..|. ......|...-...+ .|....|.. .++..|-+.|+++.|...++.
T Consensus 317 Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~ 396 (700)
T KOG1156|consen 317 KGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDL 396 (700)
T ss_pred cCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8854 4555554 011222221 111112211111113 344433433 356788899999999999998
Q ss_pred HHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 005580 378 MCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (690)
Q Consensus 378 M~~~g~~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd 456 (690)
-... .|+.+ -|-+=.+.++.+|++++|..++++-.+... ||...=+--.....++.++++|.++.....+.|. +
T Consensus 397 AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~ 471 (700)
T KOG1156|consen 397 AIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--G 471 (700)
T ss_pred Hhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--c
Confidence 7764 46543 455666889999999999999999887753 7777666777778899999999999999888775 4
Q ss_pred HHHHHHHH----------HHHHHcCChHHHHHHHHHHHHc
Q 005580 457 EPELEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 457 ~~ty~~Li----------~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+-+-+-+ .+|.+.|++..|++=|+.+...
T Consensus 472 ~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 472 AVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 43333332 3456777777777766666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.55 Score=46.55 Aligned_cols=151 Identities=15% Similarity=0.139 Sum_probs=111.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNG 436 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g 436 (690)
|--+|...|++..|.+-+++-.+... -+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+- ..-|..=.-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 44689999999999999999988532 24578999999999999999999999987654 3433 33444444579999
Q ss_pred ChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHcchHHHHhh
Q 005580 437 DVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLG 511 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a~ 511 (690)
+.++|...|++....--.| -..||.-+--+..+.|+.+.|...|++-.+......|.....-...++.+....|.
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence 9999999999987652222 23466666667789999999999999998884444444444455555555544433
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.12 Score=41.98 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (690)
+|..+...+...|++++|..++++..+.. ..+...+..+-..+...|+.++|.+.|+...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2233677778888889999999999999987754 334467888889999
Q ss_pred HcCChHHHHHHHHHHHHc
Q 005580 469 EAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (690)
..|+.++|...+.+..+.
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.41 Score=49.56 Aligned_cols=220 Identities=7% Similarity=-0.092 Sum_probs=150.7
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAA 240 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll-~~~~~~~ 240 (690)
+.+...+|.+-|..-.++ .|-+.||-.|-.+|.+-.++..|+.+|.+-.+. .|-.+||-.=+ ..+-
T Consensus 235 rLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e--- 301 (478)
T KOG1129|consen 235 RLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE--- 301 (478)
T ss_pred HhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH---
Confidence 556778888888876433 233368888999999999999999999887643 46666664322 2222
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
.-++.++|.++++ +..+. .-.|+..-..+-.+ |--.++.+.|+..++++.+.|+..-.
T Consensus 302 -------am~~~~~a~~lYk-------~vlk~-~~~nvEaiAcia~~------yfY~~~PE~AlryYRRiLqmG~~spe- 359 (478)
T KOG1129|consen 302 -------AMEQQEDALQLYK-------LVLKL-HPINVEAIACIAVG------YFYDNNPEMALRYYRRILQMGAQSPE- 359 (478)
T ss_pred -------HHHhHHHHHHHHH-------HHHhc-CCccceeeeeeeec------cccCCChHHHHHHHHHHHHhcCCChH-
Confidence 3467888888885 22221 11145555556666 88889999999999999999864222
Q ss_pred ccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHH
Q 005580 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAM 398 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~--~tyn~LI~~~~ 398 (690)
-|++ +=-+|.-.+++|-++--|.+....--.|+. ..|-.|=....
T Consensus 360 --------------------------------Lf~N-igLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV 406 (478)
T KOG1129|consen 360 --------------------------------LFCN-IGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAV 406 (478)
T ss_pred --------------------------------HHhh-HHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEE
Confidence 2223 323344556788888888877654444443 23555555566
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005580 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~ 450 (690)
-.||+..|.+.|+-..... .-+...||.|----.+.|++++|..+++...+
T Consensus 407 ~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 407 TIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred eccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 7899999999998766553 23456788887778899999999999987654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.24 Score=44.99 Aligned_cols=98 Identities=8% Similarity=-0.042 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
......+...+.+.|+.++|.+.|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...+..+-..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~ 94 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 3446667778889999999999999987764 2366777888888889999999999999887764 4456777777788
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 005580 467 SVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (690)
|...|+.++|...|++..+.
T Consensus 95 ~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 95 LLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999998887
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.53 Score=46.35 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=97.2
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHH-HhcCC--hHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK 440 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~-~k~g~--~~~ 440 (690)
.++.+++...++...... +.|...|..|-..|...|++++|...|+...+.. | |...+..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 445566666666655543 4578889999999999999999999999877653 4 455666666554 56677 599
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHH
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIA 499 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~ 499 (690)
|.+++++..+..-. +...+..|-..+.+.|++++|...++++.+. .+..+ -+.+|.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i~ 185 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHHH
Confidence 99999999886432 6677788888889999999999999999887 33333 555563
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.085 Score=57.38 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=93.5
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 566788999999999998774 443222 5566666778889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHH
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~~l~~~M~ 449 (690)
++++.... .+-|....+.-.+-|.+.++.+.|+++.+++... .|+. .+|..|..+|.+.|+++.|+..++.|.
T Consensus 222 ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99988864 2346677777777888999999999999998775 5666 499999999999999999999998765
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=95.76 E-value=1 Score=45.25 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=61.1
Q ss_pred cCHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHhcCChHHHHHHHHHHHHCC--CCCCcchH
Q 005580 366 YAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSY 425 (690)
Q Consensus 366 g~~~~A~~lf~~M~~~g~~pd~-~ty-----------------n~LI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty 425 (690)
|+.++|.+.|+...... |+. ..+ -.+-..|.+.|++++|...++...... -......+
T Consensus 129 ~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~ 206 (235)
T TIGR03302 129 TAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEAL 206 (235)
T ss_pred HHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHH
Confidence 56777777777776542 221 111 134566788999999999999987662 11234678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 426 ~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
..+..++.+.|+.++|...++.+...
T Consensus 207 ~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 207 ARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 89999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.52 Score=57.20 Aligned_cols=221 Identities=10% Similarity=0.049 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLG---QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-G~~pd---~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~ 267 (690)
..|-.-|......++.+.|.+++++.... +++-. .-.|.++++.-. --|.-+...++|.
T Consensus 1459 i~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------- 1521 (1710)
T KOG1070|consen 1459 ILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------- 1521 (1710)
T ss_pred hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH-------
Confidence 56666666666666666666666666532 22211 123334444333 2233334444553
Q ss_pred cccccCCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHc-CCCCCccccchhhhhhccccccCCCchhhhhc
Q 005580 268 ELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (690)
Q Consensus 268 em~~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~-g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (690)
+.. ..-|..+ |..|..- |.+.+.+++|.++|+.|.++ |..+-+++
T Consensus 1522 RAc---qycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~~vW~------------------------ 1568 (1710)
T KOG1070|consen 1522 RAC---QYCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTRKVWI------------------------ 1568 (1710)
T ss_pred HHH---HhcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchhhHHH------------------------
Confidence 111 0113333 6666666 77777777777777777654 21222211
Q ss_pred CCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcch
Q 005580 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (690)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (690)
. ..+.+.+..+-+.|..++.+..+.=.+- -+-...-.+..=.+.|+.+.+..+|+..... ..-..-.
T Consensus 1569 ----------~-y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDl 1636 (1710)
T KOG1070|consen 1569 ----------M-YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDL 1636 (1710)
T ss_pred ----------H-HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhH
Confidence 1 3455555566666666666554421111 1122233333445566777776677666554 2224455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChH
Q 005580 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGD 474 (690)
Q Consensus 425 y~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~ 474 (690)
|+..|+.=.++|+.+.+..+|++....++.|-- ..|.-.|..=-..|+-.
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 677777777777777777777776666665532 34555555444445443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.17 Score=57.12 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=77.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-+-|+..|+++.|.++|-+-- .++-.|++|.++|+|++|+++-.+. .|-...+..|-+--.-+-+.|+
T Consensus 771 iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcc
Confidence 6688899999999999987642 3677889999999999999887553 3444556667666666777888
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (690)
+.+|.+++-.+ -.||. -|..|-+.|..++.+++..+-
T Consensus 840 f~eaeqlyiti----~~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 840 FAEAEQLYITI----GEPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred hhhhhheeEEc----cCchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 88888877544 23443 467788888888777776554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.25 Score=43.32 Aligned_cols=93 Identities=12% Similarity=0.031 Sum_probs=42.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHH
Q 005580 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEALLR 465 (690)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv--~pd~~ty~~Li~ 465 (690)
.+...+.+.|++++|.+.|..+.... |+ ...+..+-..+.+.|+.+.|...|+.+....- ......+..+-.
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444444555555555555554331 21 12333344455555555555555555543210 011233444444
Q ss_pred HHHHcCChHHHHHHHHHHHHc
Q 005580 466 VSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+.+.|+.++|...++++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 455555555555555555554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.3 Score=45.40 Aligned_cols=121 Identities=9% Similarity=0.024 Sum_probs=93.6
Q ss_pred CchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 005580 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (690)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (690)
+......+.+..|...+.. +-..+...|++++|...|+...... +.+...|..+-..+.+.|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4445555544444444444 5577889999999999999988754 3477889999999999999999999999998753
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005580 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (690)
Q Consensus 418 ~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (690)
..+...+..+-.++.+.|+.++|...|+...+ +.|+...|..+
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~ 131 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEI 131 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHH
Confidence 34667888888899999999999999999876 45666555533
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.54 Score=47.52 Aligned_cols=121 Identities=18% Similarity=0.122 Sum_probs=92.8
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g 436 (690)
.+.|..+++-|.+.++.|.+- -+..|.+-|..++.+ .+.+.+|+-+|++|.++ ..|+.-+-|-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 344666889999999999874 366788877777765 46789999999999775 6789999999999999999
Q ss_pred ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHHHc
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M~~~ 486 (690)
++++|..++++...+.-. +..|..-+|-.-...|... -..+.+..++..
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999999877533 4555555555555566554 455677777766
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.1 Score=47.38 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=53.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (690)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (690)
|+.++.++|-++++.|+++....+++.. -|+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4556677777777777777666666432 133222110 0000 1122346677777777777
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHH
Q 005580 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWF 502 (690)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~ 502 (690)
+|+..|++..|+++++...+...-+-|. +|..|..|+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 7777777777777777776653212222 666655554
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=95.40 E-value=4.7 Score=44.07 Aligned_cols=282 Identities=10% Similarity=0.044 Sum_probs=169.9
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~ 240 (690)
+..|++..|.++|+.-. ...|+...|++.|+.=.+...++.|..+|++..- +.|++.+|---..-=-
T Consensus 152 E~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~--- 218 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE--- 218 (677)
T ss_pred HHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH---
Confidence 35678889999998852 4578889999999999999999999999999875 4588888876665555
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccCCCC--ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCC
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~--d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (690)
++|.+..|..+|. ..++..|-. +...+++.-.- -.....++.|.-+|.--... .|.
T Consensus 219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk 276 (677)
T KOG1915|consen 219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK 276 (677)
T ss_pred -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence 7888888888884 222210111 11122222111 11223344444444432221 222
Q ss_pred ccccchhhhhhccc-----------------cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC
Q 005580 319 GHMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (690)
Q Consensus 319 ~~ty~~~~li~g~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (690)
..+- -|..+|. ...+.-+..++.. -.-|-.+|-. .+..--..|+.+...++|+.....
T Consensus 277 ~rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 277 GRAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred ccHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc
Confidence 2221 1222222 0111122222221 1223334544 455555668888889999888764
Q ss_pred CCCCCH-H-HHHHHHH-----HH---HhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH----hcCChHHHHHHHHH
Q 005580 382 EVPMNE-A-SLTAVGR-----MA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEH 447 (690)
Q Consensus 382 g~~pd~-~-tyn~LI~-----~~---~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~----k~g~~~~A~~l~~~ 447 (690)
++|-. . -|---|- +| ....+++.+.++++...+. +.-..+||.-+=-.|+ ++.++..|.+++-.
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44421 1 1111111 11 2367788888888887763 5455677776655554 56788888888775
Q ss_pred HHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
. -|..|-.-+|...|..=.+.+.+|....|+.+..+-
T Consensus 430 A--IG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 430 A--IGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred H--hccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4 367788888888888888888888888888888876
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=51.70 Aligned_cols=100 Identities=22% Similarity=0.197 Sum_probs=70.9
Q ss_pred CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC----------------hHHHHH
Q 005580 385 MNEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------------VDKACS 443 (690)
Q Consensus 385 pd~~tyn~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~----------------~~~A~~ 443 (690)
-|-.+|-+.+.-|.. .+.++--..-++.|++.|+.-|..+|+.||+.+=|..- -+-|..
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~ 144 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIK 144 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHH
Confidence 355555555555543 35566666667777777887788888887777655432 244789
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChH-HHHHHHHHHH
Q 005580 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLR 484 (690)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M~ 484 (690)
++++|+.+|+.||-.+-..||.++.+.+-.- +..+++--|.
T Consensus 145 vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 145 VLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 9999999999999999999999998887543 4555555554
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.33 E-value=1.2 Score=49.33 Aligned_cols=121 Identities=8% Similarity=0.056 Sum_probs=60.5
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCc----chHHHHHHHHHh
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRL----RSYGPALSVFCN 434 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~----~ty~~lI~~~~k 434 (690)
|.+.+..+.|.++|.+-.. +.| |...++=+=-..-..+.+.+|..+|+.-... .+.+.. -+++.|=++|-+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 4445555666666655443 223 3344444443444455566666665544311 111111 123444445555
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.+..++|...|+.-... ..-|..||.++=-.|...|.++.|.+.|++-..
T Consensus 468 l~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 66666666666655443 223555555555555566666666666665543
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.52 Score=41.23 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cchHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV 431 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~--~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~ 431 (690)
+...+.+.|+.++|.+.|+++....- ......+..+...+.+.|++++|.+.|+...... |+ ...+..+-..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHH
Confidence 55677889999999999999987532 1123466778899999999999999999988652 33 3457777788
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 005580 432 FCNNGDVDKACSVEEHMLEHG 452 (690)
Q Consensus 432 ~~k~g~~~~A~~l~~~M~~~g 452 (690)
+.+.|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999998874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.16 Score=52.87 Aligned_cols=194 Identities=10% Similarity=-0.000 Sum_probs=127.8
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc---------cccCCCchhhhhcCCCCChhhhHHHHHHHHHh
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS---------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~---------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (690)
|.+.+++.+|..+.+++.- ..|-..... +.+..++. +.|...|.-.-..+..-|.+.-.-.+-+.+.-
T Consensus 295 yL~q~dVqeA~~L~Kdl~P--ttP~EyilK-gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL 371 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLDP--TTPYEYILK-GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFL 371 (557)
T ss_pred ecccccHHHHHHHHhhcCC--CChHHHHHH-HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHH
Confidence 7788888888888877632 223222222 11111111 23444444444555555554444445566667
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHH-HHHHhcCChHHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACS 443 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~k~g~~~~A~~ 443 (690)
..++++.+-.++..+.-=..-|.+-|| +..+++..|...+|+++|-.+....+ -|..+|-+++ .+|.+++..+.||.
T Consensus 372 ~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP~lAW~ 449 (557)
T KOG3785|consen 372 SFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKPQLAWD 449 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCchHHHH
Confidence 778888888888888765556666666 67889999999999999977654444 3667776665 57789999999998
Q ss_pred HHHHHHhCCCCCCHHHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 005580 444 VEEHMLEHGVYPEEPELEAL-LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (690)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~L-i~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (690)
++-.|... .+..+.--| -.-|-+++.+--|-+-|+++... .|+|+-|.-
T Consensus 450 ~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWeG 499 (557)
T KOG3785|consen 450 MMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWEG 499 (557)
T ss_pred HHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccCC
Confidence 88766432 233333333 35677889998888999999888 888876643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.25 E-value=3.1 Score=45.60 Aligned_cols=124 Identities=15% Similarity=0.104 Sum_probs=88.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCC-----CCCCcch--HHHHHHHH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRS--YGPALSVF 432 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~t--y~~lI~~~ 432 (690)
.+.-|.+++++++..|++-+++ ++-..-.||-.-..+...++++.|.+.++...+.- +..+... --.+|-.-
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q 514 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ 514 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc
Confidence 3445777999999999998876 44456778888899999999999999998766431 1111111 11111111
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 433 ~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
-.+++..|.+++....+..-+ ....|.+|-..-.+.|++++|+++|++-..-
T Consensus 515 -wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 515 -WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred -hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 348999999999988664321 3467888888889999999999999986654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.17 E-value=3.3 Score=45.15 Aligned_cols=125 Identities=10% Similarity=-0.021 Sum_probs=107.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-+-|.-.++.++|...|+.-.+-+. -....|+.+=+-|....+...|.+-++...+- ++-|-+.|-.|=.+|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 44778888899999999999887542 23467888888999999999999999988776 45688999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..-|+-.|++... ++| |...|.+|=++|.+.+++++|.+-|.+-..-
T Consensus 414 h~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999998765 455 7899999999999999999999999988776
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.2 Score=45.50 Aligned_cols=56 Identities=16% Similarity=0.116 Sum_probs=46.2
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCC
Q 005580 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (690)
Q Consensus 417 g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~ 472 (690)
.+.|+..+-.+++.+|+.+|++..|+++.+...+. ++..+..+|..|+.-....-+
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 46789999999999999999999999999887654 788888999999887654443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=3.7 Score=49.31 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=83.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-.+|-+.|+.++|..+++++.+.. +-|....|-+-..|+.. ++++|.+++.+.... |....+
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq 184 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQ 184 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhc
Confidence 6678888899999999999998876 45788889999999998 999999998876655 333344
Q ss_pred hHHHHHHHHHHHh------------------C-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 438 VDKACSVEEHMLE------------------H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 438 ~~~A~~l~~~M~~------------------~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..++.++|.++.. . |..--+.++-.|...|-+..+++++..+|+...+.
T Consensus 185 ~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 4444444444433 2 33334556666677888888999999999999887
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.69 E-value=1.9 Score=44.24 Aligned_cols=276 Identities=11% Similarity=-0.010 Sum_probs=153.3
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHh
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV--LLYLCSS 238 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~--Ll~~~~~ 238 (690)
.+..+..+|.+++..--+... + +....+.|=.+|-...++..|-..|+++-.. -|...-|.. --+.|
T Consensus 21 I~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY-- 89 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY-- 89 (459)
T ss_pred HHHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH--
Confidence 356678888888777643321 1 3366777777888888888898888887643 344333321 11111
Q ss_pred cccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc-cchhhccccccccccccccCCChhhHHHHHHHHHHcCCCC
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d-~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (690)
+++...+|+++.. .|.++..+.+ ++---+-| .-+.+++..+..+.++....|-
T Consensus 90 ---------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAI--------kYse~Dl~g~rsLveQlp~en~-- 143 (459)
T KOG4340|consen 90 ---------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAI--------KYSEGDLPGSRSLVEQLPSENE-- 143 (459)
T ss_pred ---------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHH--------hcccccCcchHHHHHhccCCCc--
Confidence 3455777777774 2222101100 11111111 1244555555555555443220
Q ss_pred CccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 005580 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRM 396 (690)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~~ 396 (690)
- | +-+. .-.-.-+.|+.+.|.+-|+...+- |..| ...||.-+.-
T Consensus 144 ----A---------------------------d--~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaH 188 (459)
T KOG4340|consen 144 ----A---------------------------D--GQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAH 188 (459)
T ss_pred ----c---------------------------c--hhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHH
Confidence 0 0 0001 111234788899999999887764 5554 5678876654
Q ss_pred HHhcCChHHHHHHHHHHHHCCCC-------------CCcch--------HHHHHHH-------HHhcCChHHHHHHHHHH
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSV-------FCNNGDVDKACSVEEHM 448 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~-------------Pd~~t--------y~~lI~~-------~~k~g~~~~A~~l~~~M 448 (690)
| +.|+.+.|+++..++.++|++ ||+.+ -+.++.+ +.+.|+.+.|.+-+-+|
T Consensus 189 y-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDm 267 (459)
T KOG4340|consen 189 Y-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDM 267 (459)
T ss_pred H-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcC
Confidence 4 567888999999988887753 34322 2334433 34678888888888888
Q ss_pred HhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHH-HHHHHHHcchHHHHhh
Q 005580 449 LEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTA-DVIAKWFNSKEAARLG 511 (690)
Q Consensus 449 ~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~-~~I~~~~~~~~~~~a~ 511 (690)
.-+ .-..|.+|..-+--. -..+++.+..+-+..+.... .++|+|+ +++.-+|+.....-|.
T Consensus 268 PPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 268 PPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred CCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHH
Confidence 533 345577776544222 12344444444455555442 3444454 6677778777654443
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.05 Score=45.32 Aligned_cols=80 Identities=15% Similarity=0.193 Sum_probs=40.8
Q ss_pred ccCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKAC 442 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~A~ 442 (690)
.|+++.|..+|+++.+.... |+...+-.+..+|.+.|++++|..+++. .+ ..|+. ...-.+-.+|.+.|+.++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35566666666666654321 2333344466666666666666666665 11 11211 22223344555666666666
Q ss_pred HHHHH
Q 005580 443 SVEEH 447 (690)
Q Consensus 443 ~l~~~ 447 (690)
+++++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66653
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.8 Score=44.47 Aligned_cols=172 Identities=13% Similarity=0.071 Sum_probs=103.9
Q ss_pred CCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhh
Q 005580 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (690)
Q Consensus 248 k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~l 327 (690)
+.|+.+.|..-|. +...-+|..+.+.||.-+.- -+.++.+.|.+...|+.++|++-.. -++.|..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH-------y~~~qyasALk~iSEIieRG~r~HP-ElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH-------YSSRQYASALKHISEIIERGIRQHP-ELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH-------HhhhhHHHHHHHHHHHHHhhhhcCC-ccCccce
Confidence 8899999999994 44444477788889987654 4678899999999999999965211 1110011
Q ss_pred hhccccccCCCchhhhhcCCCCChhh-hHHHHH-------HHHHhccCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005580 328 LDGRSNLERGPDDQSRKKDWSIDNQD-ADEIRL-------SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAM 398 (690)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~t-yn~~lI-------~~~~k~g~~~~A~~lf~~M~~~-g~~pd~~tyn~LI~~~~ 398 (690)
.+|-- ++.+ -|..+ .-+.++ .-+-+.|+.+.|.+-+-+|.-+ .-..|.+|...+.-.-.
T Consensus 221 tegiD--vrsv----------gNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~ 288 (459)
T KOG4340|consen 221 TEGID--VRSV----------GNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM 288 (459)
T ss_pred eccCc--hhcc----------cchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc
Confidence 11100 0000 01100 001122 2345678888888888888643 23467777765533222
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
.+++.+..+-+.-+...+- --..||..++--|||+.-++.|-.++.+=
T Consensus 289 -~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 289 -DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred -cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 2344444444444433321 23478999999999999999999888764
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.68 Score=52.49 Aligned_cols=79 Identities=15% Similarity=0.195 Sum_probs=51.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
|.+...+..|.+|+.+++.++.... ..--|.-+-+.|+..|+++.|.++|-+- ..++--|+.|.++|++
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 4445556777777777777766532 2334666667777777777777777653 2345567777777777
Q ss_pred HHHHHHHHHH
Q 005580 474 DRVYYLLHKL 483 (690)
Q Consensus 474 ~~A~~ll~~M 483 (690)
++|.++-.+.
T Consensus 808 ~da~kla~e~ 817 (1636)
T KOG3616|consen 808 EDAFKLAEEC 817 (1636)
T ss_pred HHHHHHHHHh
Confidence 7777765443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.44 E-value=3.2 Score=50.78 Aligned_cols=272 Identities=8% Similarity=-0.012 Sum_probs=159.1
Q ss_pred hhhcCcchHhHHHHHHHhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHH
Q 005580 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIK-LGQYHYNVLLY 234 (690)
Q Consensus 161 ~~~~~~~~A~~vf~~m~~~g~~~~~~~~p-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----G~~-pd~~tyn~Ll~ 234 (690)
...++.++|...+++-...- +.. ..+ -...++.+-..+...|++++|...+.+.... |-. +-..+++.+-.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAEL--PLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcC--CCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 35678888998888864421 111 111 1234556666677899999999999988742 211 11223333344
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc----cchhhccccccccccccccCCChhhHHHHHHHH
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d----~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (690)
.+. ..|++++|...+... .+.....+..+ ...+..+-.. +...|++++|...+.+.
T Consensus 540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG 599 (903)
T ss_pred HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence 444 578999998887411 11212112211 1223333333 55669999999988876
Q ss_pred HHcCC--CCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC----CCC
Q 005580 311 ENLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP 384 (690)
Q Consensus 311 ~~~g~--~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g~~ 384 (690)
....- .|.. ....+.. +-..+...|+.++|.+.+++.... +..
T Consensus 600 l~~~~~~~~~~------------------------------~~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 600 LEVLSNYQPQQ------------------------------QLQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHhhhccCchH------------------------------HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 54311 0110 0111222 445667889999999999887542 111
Q ss_pred CCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC
Q 005580 385 MNEASL--TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (690)
Q Consensus 385 pd~~ty--n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~k~g~~~~A~~l~~~M~~~----gv~p 455 (690)
+..... ...+..+...|+.+.|.+++............ ..+..+-.++...|+.++|..++++.... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111011 11234455689999999998775432111111 11345566778889999999999887653 4333
Q ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 456 d-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+ ..++..+-.++.+.|+.++|...|.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 245556667778999999999999998775
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.8 Score=42.44 Aligned_cols=53 Identities=9% Similarity=0.114 Sum_probs=32.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKR 412 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~ 412 (690)
|-..+...|++++|+..++....... ....+..+=+.|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44556677777777777765433222 233455555667777777777777654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=8.8 Score=46.95 Aligned_cols=276 Identities=13% Similarity=0.016 Sum_probs=153.1
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~--tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~----~tyn~Ll~~ 235 (690)
..++.++|..++......-...+....|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4567778877777764321111111112211 1112223446789999999999998753111122 222333333
Q ss_pred HHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCc--cchhhccccccccccccccCCChhhHHHHHHHHHHc
Q 005580 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (690)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d--~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (690)
+. ..|++++|...+... .+.....|-.. ...++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 33 578999998888411 01111111111 1223333334 67789999999998876542
Q ss_pred CC---CCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CCCC--C
Q 005580 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (690)
Q Consensus 314 g~---~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~p--d 386 (690)
.- .++... ....+.. +-..+...|++++|...+++.... ...+ .
T Consensus 561 ~~~~~~~~~~~----------------------------~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLPM----------------------------HEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhccccccH----------------------------HHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 000000 0111222 334456679999999999887542 1112 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCcchH-----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---H
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPE---E 457 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-----~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd---~ 457 (690)
...+..+...+...|+.++|.+.+.+.....- ......+ ...+..+...|+.+.|.+++........... .
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 34455566678889999999999988754311 0111111 1122445568999999999877554221111 1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+..+-.++...|+.++|..++.+....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12345666778899999999999987653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.29 E-value=12 Score=42.58 Aligned_cols=319 Identities=11% Similarity=0.080 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL--GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p--d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em 269 (690)
..|-.=-.+|-+.|.+-.+..+......-|+.- -..||+.--..|. +.+.++-|..+|... +
T Consensus 480 dqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~----------k~~~~~carAVya~a------l 543 (913)
T KOG0495|consen 480 DQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE----------KRPAIECARAVYAHA------L 543 (913)
T ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH----------hcchHHHHHHHHHHH------H
Confidence 666666677777777777777777776666542 2356666666666 556666666666410 1
Q ss_pred cccCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhcc-------ccccCCCchh
Q 005580 270 GDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR-------SNLERGPDDQ 341 (690)
Q Consensus 270 ~~~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~-------~~~a~~~~~~ 341 (690)
. -++ +...|.-.... --..|..+....+|++....- |-+-.+ -|+-+- ...|+.++..
T Consensus 544 q---vfp~k~slWlra~~~------ek~hgt~Esl~Allqkav~~~--pkae~l---wlM~ake~w~agdv~~ar~il~~ 609 (913)
T KOG0495|consen 544 Q---VFPCKKSLWLRAAMF------EKSHGTRESLEALLQKAVEQC--PKAEIL---WLMYAKEKWKAGDVPAARVILDQ 609 (913)
T ss_pred h---hccchhHHHHHHHHH------HHhcCcHHHHHHHHHHHHHhC--CcchhH---HHHHHHHHHhcCCcHHHHHHHHH
Confidence 1 112 44445555444 445666666666776665431 211111 000000 0001111111
Q ss_pred hhhcCCCCCh-hhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 005580 342 SRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (690)
Q Consensus 342 m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (690)
.... -|+. ..|-. -+.--..+..+++|..+|.+-.. ..|+.-.|.--+..---.+..++|.+++++..+. -|
T Consensus 610 af~~--~pnseeiwla-avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp 682 (913)
T KOG0495|consen 610 AFEA--NPNSEEIWLA-AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FP 682 (913)
T ss_pred HHHh--CCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CC
Confidence 1110 1111 11212 33444445555556555555443 3344444444444444445555666655554433 23
Q ss_pred CcchHHHHH-HHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh-HH-H
Q 005580 421 RLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TA-D 496 (690)
Q Consensus 421 d~~ty~~lI-~~~~k~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~-~ 496 (690)
+-.-+-.++ ..+-..++++.|.+.|..=. ...|+ +..|-.|-+.=-+.|.+.+|..+|++-+-+ .|... .| .
T Consensus 683 ~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~--k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~lwle 758 (913)
T KOG0495|consen 683 DFHKLWLMLGQIEEQMENIEMAREAYLQGT--KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALLWLE 758 (913)
T ss_pred chHHHHHHHhHHHHHHHHHHHHHHHHHhcc--ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchhHHH
Confidence 322211111 12222333344433333211 12344 445555555556788999999999998877 55544 45 4
Q ss_pred HHHHHHcchHHHHhhcccchhhHHHHHhh---hcCCccccccccCCCcceEEeeeecCCCccccc
Q 005580 497 VIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCC 558 (690)
Q Consensus 497 ~I~~~~~~~~~~~a~~~~~~~~~v~ea~~---~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~c 558 (690)
.|..-.+.|....|. ..+..|+. .+|-+|-+-.|.--.|..-|- ++..--.|..-
T Consensus 759 ~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~d 816 (913)
T KOG0495|consen 759 SIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEHD 816 (913)
T ss_pred HHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccCC
Confidence 477767776655554 23444443 566677777777667776555 34433345443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=1.6 Score=41.61 Aligned_cols=107 Identities=18% Similarity=0.178 Sum_probs=54.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLR 465 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~ 465 (690)
.|..+-..+...|++++|...|++..+..-.|. ...|..+-..+.+.|+.++|...+++..+. .| +...+..+-.
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 114 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHH
Confidence 344455555555666666666665544321111 234555555555666666666666555542 22 2333333444
Q ss_pred HHHHcCC--------------hHHHHHHHHHHHHcCCCCChhHHHHHHHH
Q 005580 466 VSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (690)
Q Consensus 466 ~~~~~g~--------------~~~A~~ll~~M~~~~~g~~p~t~~~I~~~ 501 (690)
.|...|+ +++|.+++++.... .|+.+..+..|
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~ 160 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNW 160 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHH
Confidence 4444443 45677777766654 46545444444
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.14 Score=51.83 Aligned_cols=84 Identities=11% Similarity=-0.006 Sum_probs=66.4
Q ss_pred ccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------ChHHHHHHHHHHHHCCCCCCcchHHHH
Q 005580 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (690)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g----------------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (690)
.+.++-...-++.|++.|+.-|..+|+.||+.+=|.. +-+=+++++++|+..|+.||..+-..|
T Consensus 85 R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~l 164 (406)
T KOG3941|consen 85 RTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDIL 164 (406)
T ss_pred cchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHH
Confidence 4567777788899999999999999999999765532 223478999999999999999999999
Q ss_pred HHHHHhcCCh-HHHHHHHHHH
Q 005580 429 LSVFCNNGDV-DKACSVEEHM 448 (690)
Q Consensus 429 I~~~~k~g~~-~~A~~l~~~M 448 (690)
|++|.+.+.. .+-+++.--|
T Consensus 165 vn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 165 VNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HHHhccccccHHHHHHHHHhh
Confidence 9999988764 2333443334
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.11 Score=43.21 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=57.9
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHH
Q 005580 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (690)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (690)
.|+++.|+.+++++.+..- .|+...+-.+-.+|.+.|+.++|..+++. .+ ..|+. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5789999999999987732 22444455578899999999999999988 22 23333 33334467788999999999
Q ss_pred HHHHH
Q 005580 478 YLLHK 482 (690)
Q Consensus 478 ~ll~~ 482 (690)
..|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.89 E-value=2.2 Score=43.03 Aligned_cols=122 Identities=11% Similarity=0.005 Sum_probs=95.7
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
.+....+.|++.+|...|.+...- -++|.-+||.+=-+|.+.|+.++|..-+.+..+.-. -+...+|.|--.+.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCC
Confidence 556777889999999999998763 467889999999999999999999988888766521 233556777777888899
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
.+.|..++.+-...+.. |..+-.-|.-.....|++++|.++-..
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999988877544 455555566777889999999887544
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=93.88 E-value=1.6 Score=42.92 Aligned_cols=109 Identities=11% Similarity=0.043 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--hHHHHHHHHHHHHCCCCCCcchHHHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~-~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (690)
.|.. |-..|...|++++|...|++...... -|...+..+-.++ ...|+ .++|.+++++..+..- -+...+..+-
T Consensus 75 ~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA 151 (198)
T PRK10370 75 QWAL-LGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLA 151 (198)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444 66788899999999999999887542 3667777777764 67777 5999999999887742 2667888888
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
..+.+.|+.++|...|+.+.+. ..|+..-+. +|.+
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~-~i~~ 186 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH-HHHH
Confidence 8999999999999999999876 345554443 3344
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.88 E-value=6.3 Score=44.72 Aligned_cols=297 Identities=12% Similarity=0.055 Sum_probs=166.6
Q ss_pred hhcCcchHhHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005580 162 QRTNDSGQYKVRGITDEKG-SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g-~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~ 240 (690)
..++..+-..+|.+....- .++.. -.|- ..|..+-+.|-..|+++.|..+|++..+-..+ .+.-...+=-.|+...
T Consensus 359 ~e~~~~~~i~tyteAv~~vdP~ka~-Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~-~v~dLa~vw~~waemE 435 (835)
T KOG2047|consen 359 YEGNAAEQINTYTEAVKTVDPKKAV-GSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYK-TVEDLAEVWCAWAEME 435 (835)
T ss_pred hcCChHHHHHHHHHHHHccCcccCC-CChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc-chHHHHHHHHHHHHHH
Confidence 3456677778888875431 12222 2333 57888999999999999999999998765432 2222222222333222
Q ss_pred cCCcccCCCCchhhHHhHhhhhccccccccccC------CCCc--------cchhhccccccccccccccCCChhhHHHH
Q 005580 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMDN--------NGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (690)
Q Consensus 241 ~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~------gv~d--------~~tyn~LI~~~~~~~~~~~~g~~~~A~~l 306 (690)
. +..+++.|..+...- ..+.... |-.+ ...|.-.++- .-..|-++....+
T Consensus 436 l------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk~v 499 (835)
T KOG2047|consen 436 L------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTKAV 499 (835)
T ss_pred H------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHHHH
Confidence 1 345566676666310 0111110 0001 1123333343 3345677777888
Q ss_pred HHHHHHcCCCCCccccchhhhhhc--cccccCCCchhhhhcCC----CCChh-hhHHHHHHHHHhcc--CHHHHHHHHHH
Q 005580 307 FNEKENLGQFSNGHMKLNSQLLDG--RSNLERGPDDQSRKKDW----SIDNQ-DADEIRLSEDAKKY--AFQRGFEIYEK 377 (690)
Q Consensus 307 f~eM~~~g~~Pd~~ty~~~~li~g--~~~~a~~~~~~m~~~g~----~pd~~-tyn~~lI~~~~k~g--~~~~A~~lf~~ 377 (690)
++.+....+.--.+..|...+++- |..++.++ -.+|+ .|++. .||+.|...-.+-| .+++|..+|++
T Consensus 500 YdriidLriaTPqii~NyAmfLEeh~yfeesFk~----YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEq 575 (835)
T KOG2047|consen 500 YDRIIDLRIATPQIIINYAMFLEEHKYFEESFKA----YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQ 575 (835)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHH----HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 888887765543333331122111 11222111 12343 24543 46664444444433 78999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005580 378 MCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (690)
Q Consensus 378 M~~~g~~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv 453 (690)
-.+ |++|...-+--|+-+- -+.|....|+.++++... ++++. ...||+.|.-....=-+.....+|++..+.
T Consensus 576 aL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~-- 651 (835)
T KOG2047|consen 576 ALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES-- 651 (835)
T ss_pred HHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--
Confidence 988 7877654433333221 135888889999988543 35443 357888887666655555667777777664
Q ss_pred CCCHHHHHHHHHHH---HHcCChHHHHHHHHHHHH
Q 005580 454 YPEEPELEALLRVS---VEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 454 ~pd~~ty~~Li~~~---~~~g~~~~A~~ll~~M~~ 485 (690)
.||...-...|+.- ++.|.+++|..++..-.+
T Consensus 652 Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 652 LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 56665544444332 778888888888776544
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=1.6 Score=41.75 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHh
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k 434 (690)
+-..|...|++++|...|++.......++ ...|..+...+.+.|++++|...+.+.... .|+ ...+..+-..+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 55677888999999999999987543332 467888899999999999999999988765 343 4455555566666
Q ss_pred cCC
Q 005580 435 NGD 437 (690)
Q Consensus 435 ~g~ 437 (690)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.57 E-value=9.1 Score=45.42 Aligned_cols=125 Identities=17% Similarity=0.162 Sum_probs=77.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcch--HHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFC 433 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--y~~lI~~~~ 433 (690)
|-+.|.-.|+.+.++.+...+......- -...|=-+-++|-..|++++|...+.+- .+..||-++ +--|-..+.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s--~k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMES--LKADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHH--HccCCCCccccccchhHHHH
Confidence 6677778888888888888877643111 1123556677788888888888887544 344555533 345667788
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcC----ChHHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAG----KGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g----~~~~A~~ll~~M~~~ 486 (690)
+.|+++.+...|+...+. .||.. |.-+|=..|+..+ ..++|..++.+-...
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 888888888888877664 34433 3333333333332 445666666555544
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=6.2 Score=44.92 Aligned_cols=146 Identities=8% Similarity=-0.050 Sum_probs=97.7
Q ss_pred cCCCCChhhhHHHHHHHHHh--cc---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhc--------CChHHHHHHH
Q 005580 345 KDWSIDNQDADEIRLSEDAK--KY---AFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSM--------GDGDMAFDMV 410 (690)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k--~g---~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~~~~~--------g~~~~A~~l~ 410 (690)
.....|...|.. .+.+... .+ ..++|..+|++..+. .||- ..|..+..++... .++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 444556667766 5555333 22 377999999999875 4653 3444443333221 1223344444
Q ss_pred HHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005580 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (690)
Q Consensus 411 ~~M~~~-g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (690)
...... ....+...|.++--.....|+.++|...+++..+.. |+...|..+-..|...|+.++|.+.+++-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 433232 122344677777555666899999999999998865 78899999999999999999999999998877 6
Q ss_pred CChhHHHH
Q 005580 490 VSPSTADV 497 (690)
Q Consensus 490 ~~p~t~~~ 497 (690)
+...||-.
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 66557744
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.48 E-value=2.6 Score=49.59 Aligned_cols=131 Identities=12% Similarity=0.076 Sum_probs=99.3
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
..+.|+.++|..+++...+. .||.... -..+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 56788999999999887764 4444333 2337788899999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 374 IYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 374 lf~~M~~~g~~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
.+++..... || ....+.+-.++.+.|+.++|.++|++.... .|| ..++..+=..+-+.|+.++|...|+...+.
T Consensus 142 ~~~~~l~~~--p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 142 EIELYFSGG--SSSAREILLEAKSWDEIGQSEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998754 44 456677777888999999999999999874 344 577778888888999999999999987654
Q ss_pred CCCCCHHHHHHH
Q 005580 452 GVYPEEPELEAL 463 (690)
Q Consensus 452 gv~pd~~ty~~L 463 (690)
..|...-|+-+
T Consensus 218 -~~~~~~~~~~~ 228 (694)
T PRK15179 218 -IGDGARKLTRR 228 (694)
T ss_pred -hCcchHHHHHH
Confidence 22333444433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.41 E-value=2.3 Score=46.59 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=90.6
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCChHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~~~~ 440 (690)
+-..|..++|+..++.+... .+-|..-+....+.+.+.++..+|.+.++.+... .|+. ...-.+-.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34678888999999887764 2335555666677888899999999999888765 4663 344445567888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|..++++-... ..-|...|..|-.+|...|+..+|..-.-++-..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 98888887655 4557888999999999999888887766665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.23 Score=39.20 Aligned_cols=52 Identities=17% Similarity=0.227 Sum_probs=26.8
Q ss_pred hccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
+.|++++|.++|+++...... |...+-.+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555666666555543211 4444445555555555555555555555443
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=93.23 E-value=1.3 Score=47.85 Aligned_cols=101 Identities=13% Similarity=0.147 Sum_probs=76.5
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCCh
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~ 438 (690)
..+...|++++|.++|++..+... -+...|..+-.+|.+.|++++|+..++..... .| +...|..+-.+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCCH
Confidence 345577899999999999887542 35677888888888999999999999888765 34 455677777788889999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 439 DKACSVEEHMLEHGVYPEEPELEALLR 465 (690)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (690)
++|...|++..+ +.|+......++.
T Consensus 87 ~eA~~~~~~al~--l~P~~~~~~~~l~ 111 (356)
T PLN03088 87 QTAKAALEKGAS--LAPGDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 999999988876 4466555555543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.4 Score=48.52 Aligned_cols=212 Identities=11% Similarity=0.087 Sum_probs=148.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCC
Q 005580 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (690)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv 275 (690)
.+-..+.+.|-...|+.+|++.. .|.-+|..|+ ..|+.++|..+.. +++.+ -
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~----------~lg~~~kaeei~~------q~lek---~ 454 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYL----------LLGQHGKAEEINR------QELEK---D 454 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHH----------HhcccchHHHHHH------HHhcC---C
Confidence 45566777899999999998764 5667888888 6777888888874 33331 1
Q ss_pred CccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhH
Q 005580 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (690)
Q Consensus 276 ~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn 355 (690)
+|..-|..+-+. .-..-.+++|.++++.--.+. .- .++
T Consensus 455 ~d~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r-------------------------------~~~ 492 (777)
T KOG1128|consen 455 PDPRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QR-------------------------------SLA 492 (777)
T ss_pred CcchhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HH-------------------------------hhc
Confidence 245557777777 666777788888887543220 00 000
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc-chHHHHHHHHH
Q 005580 356 EIRLSEDAKKYAFQRGFEIYEKMCL-DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFC 433 (690)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~-~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~ 433 (690)
. .....++++++.+.|+.-.+ .-+ -..||=.+=-+.-+.+++..|.+-|..-.. ..||. ..||.+=.+|.
T Consensus 493 ~----~~~~~~~fs~~~~hle~sl~~npl--q~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 493 L----LILSNKDFSEADKHLERSLEINPL--QLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYI 564 (777)
T ss_pred c----ccccchhHHHHHHHHHHHhhcCcc--chhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHH
Confidence 1 11235788888888875443 222 234555544455678899999999987654 35655 68999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.|+-.+|+..+.+..+.+ .-+.-.|.-.+-...+.|.+++|++.+++|.+.
T Consensus 565 ~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 9999999999999998887 334455555666678999999999999888653
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=93.10 E-value=1.6 Score=41.49 Aligned_cols=59 Identities=12% Similarity=0.072 Sum_probs=33.6
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
+...+...|++++|...|++.......| ...+|..+-..|.+.|+.++|.+.++.....
T Consensus 41 ~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 41 DGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER 101 (168)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444555666777777666665432222 1235666666666666666666666665543
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=3.1 Score=48.92 Aligned_cols=124 Identities=8% Similarity=-0.085 Sum_probs=101.3
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH-HHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI~~~~k~ 435 (690)
|-....+.|..++|..+++...+. .||. ...-.+...+.+.+++++|....++.... .|+..+. +.+-.++.+.
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 567778899999999999999874 5664 56788889999999999999999988776 4666544 4455566788
Q ss_pred CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|+.++|..+|++....+ .-+..++..+=..+-+.|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999998832 223778888888889999999999999998764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=92.76 E-value=0.55 Score=43.46 Aligned_cols=57 Identities=18% Similarity=0.245 Sum_probs=27.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M 448 (690)
..++..+...|++++|.++...+.... .-|...|-.+|.+|...|+..+|.++|+.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 334444445555555555555554431 124445555555555555555555555544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.5 Score=45.73 Aligned_cols=139 Identities=15% Similarity=0.114 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH-HHHH
Q 005580 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPAL 429 (690)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI 429 (690)
.+|.. .|+.--+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|..+|+.=... -||.-.| +-.+
T Consensus 398 ~v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hHHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 34445 6777777888899999999999999 67999999999998875 6778899999753222 3666555 4566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhHHHH
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (690)
..+.+-++-+.|..+|+.-+.+ +.-+ -..|..+|+.=.+-|++..|+.|=++|.+. .+..++..+
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 7778889999999999955433 2223 568999999999999999999999999998 777776655
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.70 E-value=3.3 Score=45.89 Aligned_cols=129 Identities=15% Similarity=0.120 Sum_probs=94.8
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCCcchH-HHHH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPAL 429 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~ty-~~lI 429 (690)
+|-. .|+.--|..-++.|..+|.+..+.+..+ +++.++++|.-||. ++..-|.++|+- |+.. +|.-.| ..-+
T Consensus 368 v~~~-~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~Yl 442 (656)
T KOG1914|consen 368 VYCQ-YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYL 442 (656)
T ss_pred ehhH-HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHH
Confidence 3444 5666667777788888888888887777 78888888887775 567788888875 3333 344333 4566
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+-+...++-..|..+|+.....++.||. ..|..+|+.=..-|++..+.++-+++...
T Consensus 443 dfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 443 DFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 7777778888888888888888666543 67888888888888888888887777665
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.57 Score=48.88 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
.+|..+++..-+.+.++.|..+|.+..+.+ +..+++...++|..+ ..++.+.|.++|+...+. +..+...|...|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578899999999999999999999998653 566777777777544 357778899999999876 56688889999999
Q ss_pred HHHcCChHHHHHHHHHHHHc
Q 005580 467 SVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+.++.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999999876
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.5 Score=37.17 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=27.4
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.|++++|.++|+.+....-. |...+-.|..+|.+.|++++|..+|+++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555543211 4444445555556666666666666555555
|
... |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=92.45 E-value=2.9 Score=43.61 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=54.3
Q ss_pred cCHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-----CCcch-HHHHHHHHH
Q 005580 366 YAFQRGFEIYEKMCL----DEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-----PRLRS-YGPALSVFC 433 (690)
Q Consensus 366 g~~~~A~~lf~~M~~----~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-----Pd~~t-y~~lI~~~~ 433 (690)
|++++|.+.|++-.+ .| .+. ..++.-+...+.+.|++++|.++|++....-.. +++.. |-..+-.+.
T Consensus 129 ~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L 207 (282)
T PF14938_consen 129 GDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHL 207 (282)
T ss_dssp --HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHH
Confidence 566777766665442 22 111 234566667788888888888888887654322 22221 222333455
Q ss_pred hcCChHHHHHHHHHHHhC--CCCC--CHHHHHHHHHHH
Q 005580 434 NNGDVDKACSVEEHMLEH--GVYP--EEPELEALLRVS 467 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~--gv~p--d~~ty~~Li~~~ 467 (690)
..||...|.+.|++.... ++.. .......||.+|
T Consensus 208 ~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 208 AMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 568888888888877644 2222 233444555554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.06 E-value=8.3 Score=39.16 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=97.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHH-----H
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-----~ 432 (690)
++..+.-.|.+.-...++++..+.....+.+....|.+.-.+.||.+.|...|+..++..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 44444445667777888888888877778888999999999999999999999988877666777788777653 3
Q ss_pred HhcCChHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 433 ~k~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
.-.++...|...|++.....-. |.+.-| +|+..| .|+..+|.+.+..|... .|.|.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~ 320 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHY 320 (366)
T ss_pred ecccchHHHHHHHhhccccCCC-chhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccc
Confidence 4467888888889887665321 222222 444444 58899999999999998 66665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.01 E-value=9.3 Score=42.76 Aligned_cols=242 Identities=12% Similarity=0.022 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
.....--+-|-..+++.+.+++++...+. .++....+..-|..+.. .| +...+|.+. +.|.+
T Consensus 245 dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~e----------l~---~~n~Lf~ls----h~LV~ 306 (611)
T KOG1173|consen 245 DLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYE----------LG---KSNKLFLLS----HKLVD 306 (611)
T ss_pred HHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHH----------hc---ccchHHHHH----HHHHH
Confidence 44555556667789999999999998753 23444455555665552 22 333444322 34443
Q ss_pred cCCCC-ccchhhccccccccccccccCCChhhHHHHHHHHH--HcCCCCCccccc------------------hhhhhhc
Q 005580 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE--NLGQFSNGHMKL------------------NSQLLDG 330 (690)
Q Consensus 272 ~~gv~-d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~--~~g~~Pd~~ty~------------------~~~li~g 330 (690)
..+ ..++|=++=-- |-..|+..+|++.|..-. ..-.-|--+.|. ...++.|
T Consensus 307 --~yP~~a~sW~aVg~Y------Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G 378 (611)
T KOG1173|consen 307 --LYPSKALSWFAVGCY------YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG 378 (611)
T ss_pred --hCCCCCcchhhHHHH------HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC
Confidence 233 44555444333 445567777777776532 222222222222 1122222
Q ss_pred cc----------------cccCCCchhhhhcCCCC-ChhhhHHHHHHHHHhccCHHHHHHHHHHHHhC--CCCCC----H
Q 005580 331 RS----------------NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPMN----E 387 (690)
Q Consensus 331 ~~----------------~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--g~~pd----~ 387 (690)
+- +.|+..|.+.. ++-| |....+. +=-..-+.+.+.+|...|+.-... .+.+. +
T Consensus 379 ~hlP~LYlgmey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~E-lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~ 455 (611)
T KOG1173|consen 379 CHLPSLYLGMEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHE-LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWE 455 (611)
T ss_pred CcchHHHHHHHHHHhccHHHHHHHHHHHH--hcCCCcchhhhh-hhheeehHhhhHHHHHHHHHHHHHhhhccccccchh
Confidence 21 22333333222 2233 4444444 222223456677777777765521 11121 2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (690)
.+++.|=+.|-+.+..++|+..+++-... ..-|..+|+++=-.|...|+++.|.+.|.+-. .+.||..+-..|+.
T Consensus 456 p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 456 PTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLK 530 (611)
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHH
Confidence 34566666777777777777777766554 34466777777777777777777777777654 35677666666665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=91.97 E-value=2.7 Score=45.41 Aligned_cols=96 Identities=13% Similarity=0.015 Sum_probs=77.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChH
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (690)
..+...|++++|+++|++..+..- -+...|..+-.+|.+.|++++|...+++..+.. ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 455678999999999999987631 245677777888999999999999999998753 235677888888999999999
Q ss_pred HHHHHHHHHHHcCCCCChhH
Q 005580 475 RVYYLLHKLRTSVRKVSPST 494 (690)
Q Consensus 475 ~A~~ll~~M~~~~~g~~p~t 494 (690)
+|...|++.... .+....
T Consensus 88 eA~~~~~~al~l--~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGASL--APGDSR 105 (356)
T ss_pred HHHHHHHHHHHh--CCCCHH
Confidence 999999999887 444333
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.79 E-value=6.5 Score=46.75 Aligned_cols=108 Identities=9% Similarity=0.045 Sum_probs=55.1
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+-.+-.+.|.+.+|.+-|-+- -|...|.-+|+...+.|.+++-.+.+...++..-.|.+. +.||-+|++.++
T Consensus 1110 lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~r 1181 (1666)
T KOG0985|consen 1110 LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNR 1181 (1666)
T ss_pred HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhch
Confidence 445555555555555544332 244556666666666666666666665555554445443 356666666666
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLL 480 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll 480 (690)
+.+-.++.. -||..-...+=+-|...|.++.|.-++
T Consensus 1182 l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1182 LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 554443331 244444444444444444444444333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.30 E-value=32 Score=39.45 Aligned_cols=279 Identities=11% Similarity=-0.019 Sum_probs=167.8
Q ss_pred hhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005580 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (690)
Q Consensus 162 ~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~ 241 (690)
..|..++-..+|.+....-. + ..+.|-....-+-.+||+..|..++.+.....- -+...|-.-++.-.
T Consensus 562 ~hgt~Esl~Allqkav~~~p-k------ae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~---- 629 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQCP-K------AEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEF---- 629 (913)
T ss_pred hcCcHHHHHHHHHHHHHhCC-c------chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhh----
Confidence 34555666677777654311 1 125666666777777888888888888776432 25566666666666
Q ss_pred CCcccCCCCchhhHHhHhhhhccccccccccCCCCccch-hhccccccccccccccCCChhhHHHHHHHHHHcCCCCCcc
Q 005580 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (690)
Q Consensus 242 ~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~t-yn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (690)
....+++|..+|. .-....|-.-+.+ +-.+ .--.+.+++|.+++++-.+. .|+..
T Consensus 630 ------en~e~eraR~lla-------kar~~sgTeRv~mKs~~~---------er~ld~~eeA~rllEe~lk~--fp~f~ 685 (913)
T KOG0495|consen 630 ------ENDELERARDLLA-------KARSISGTERVWMKSANL---------ERYLDNVEEALRLLEEALKS--FPDFH 685 (913)
T ss_pred ------ccccHHHHHHHHH-------HHhccCCcchhhHHHhHH---------HHHhhhHHHHHHHHHHHHHh--CCchH
Confidence 6677888888884 2222212222222 1111 22356778888888765543 45544
Q ss_pred ccchhhhhhccccccCCCchhh---hhcC--CCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 005580 321 MKLNSQLLDGRSNLERGPDDQS---RKKD--WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR 395 (690)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m---~~~g--~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~ 395 (690)
-+ .++-|...+...-.+.. --.| ..|+.+-....|...=-+.|.+-+|..+|+.-+.++. -|...|-..|+
T Consensus 686 Kl---~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir 761 (913)
T KOG0495|consen 686 KL---WLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP-KNALLWLESIR 761 (913)
T ss_pred HH---HHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHH
Confidence 43 34444331111111100 0112 2355544444355666677888999999998887753 47788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH
Q 005580 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (690)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (690)
+=.+.|..+.|..++.+..+. |.-+..-|.--|...-+.++-.+....+.. +.-|..+.-++-..|-...++++
T Consensus 762 ~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~k 835 (913)
T KOG0495|consen 762 MELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEK 835 (913)
T ss_pred HHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHH
Confidence 999999999998888776554 544556677666666666553333333222 44566666666666667777777
Q ss_pred HHHHHHHHHHc
Q 005580 476 VYYLLHKLRTS 486 (690)
Q Consensus 476 A~~ll~~M~~~ 486 (690)
|.+-|.+-...
T Consensus 836 ar~Wf~Ravk~ 846 (913)
T KOG0495|consen 836 AREWFERAVKK 846 (913)
T ss_pred HHHHHHHHHcc
Confidence 77777776665
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.27 E-value=2.1 Score=45.38 Aligned_cols=105 Identities=10% Similarity=-0.018 Sum_probs=82.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
.|.-+...|....|.++-.+.+ .||..-|-..|++|+..++|++-.++-.. .- ..+-|-+++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kK--sPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KK--SPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CC--CCCChHHHHHHHHHCCC
Confidence 4566677888888888877664 48999999999999999999987776432 22 34889999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (690)
..+|..+...+ ++..-+..|.++|++.+|.+.-.+
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999888772 336678888999999998775333
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.21 E-value=30 Score=39.07 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=90.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH--------HHHHCCCCCCcchHHHHHHHHHhcCCh
Q 005580 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 367 ~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~--------~M~~~g~~Pd~~ty~~lI~~~~k~g~~ 438 (690)
.+.+|.+++...-+....-..++--+++......|+++.|.+++. .+.+.+..|-++. +++.-+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccCC
Confidence 466777777776654333334556666777888999999999999 6777777776654 566777788888
Q ss_pred HHHHHHHHHHHhC--CCCCCHHHHHHHHHH----HHHcCChHHHHHHHHHHHHcCCCCChh-HHHHHHHHHcchH
Q 005580 439 DKACSVEEHMLEH--GVYPEEPELEALLRV----SVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKE 506 (690)
Q Consensus 439 ~~A~~l~~~M~~~--gv~pd~~ty~~Li~~----~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~~ 506 (690)
+.|-.++++.... .-.+.....++++.- =.+.|..++|..+++++.... +.+.+ ....+.+++.-..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcCH
Confidence 8888888776532 111222333333333 257899999999999999851 22222 3444777766543
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.09 E-value=4.8 Score=43.98 Aligned_cols=120 Identities=14% Similarity=0.146 Sum_probs=95.6
Q ss_pred HHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
+=-..|++..|.++|+.-.+ ..||...|++.|+-=.+-..++.|..+++...-. .|++.+|---..-=-++|.+..
T Consensus 150 mEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 33456889999999998765 6799999999999999999999999999987654 5999999888888888999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHH----HcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSV----EAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~----~~g~~~~A~~ll~~M~~~ 486 (690)
|..+|+...+. .-|...-..|+.+++ ++..++.|.-+++.-.++
T Consensus 226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999887653 124444455555554 566778888888887777
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=91.08 E-value=21 Score=40.64 Aligned_cols=293 Identities=9% Similarity=-0.011 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhcccccccc
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~ 270 (690)
..|-...-+.--.|+...|..+.++..+.- -.|+...|.-....+-+... -.+.|...+|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i----~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI----LIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH----HHHcccHHHHHHHHH--------hh
Confidence 677777778888899999999999998654 35777777655444332110 005566777776663 11
Q ss_pred ccCCCCccchhh-ccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccc------hh-------hhhhccc----
Q 005580 271 DSRDMDNNGQLD-YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRS---- 332 (690)
Q Consensus 271 ~~~gv~d~~tyn-~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~------~~-------~li~g~~---- 332 (690)
+. .+.|.+.|- +--+- +.+.+++++|..++..+..+ -||.+-|. .+ .+-..|.
T Consensus 212 e~-~i~Dkla~~e~ka~l------~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 212 EK-QIVDKLAFEETKADL------LMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hh-HHHHHHHHhhhHHHH------HHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 11 111222211 11111 56778888888888888776 47777776 10 0001111
Q ss_pred ----------------------cccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHH----HHHHhCCC---
Q 005580 333 ----------------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIY----EKMCLDEV--- 383 (690)
Q Consensus 333 ----------------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf----~~M~~~g~--- 383 (690)
..-..++..+.++|+.+-.. . +.+.|-.-...+-..++. ..|...|.
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~---d-l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~ 358 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK---D-LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF 358 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---h-hHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence 00111344556666654322 2 333332222211111222 22221111
Q ss_pred -------CCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 005580 384 -------PMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (690)
Q Consensus 384 -------~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv 453 (690)
+|....|+ -++..|-+.|+++.|...++.-... .|+.+ -|-+=-..++.+|++++|...+++..+-.
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 46655554 4677788899999999999976544 45543 33333477889999999999999987654
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh------HH-HH--HHHHHcchHHHHhhc
Q 005580 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS------TA-DV--IAKWFNSKEAARLGK 512 (690)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~------t~-~~--I~~~~~~~~~~~a~~ 512 (690)
.||...-.--..-..++.+.++|.++.....+.+.+.-.+ .| .+ -.++.+.++...|.+
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALK 503 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALK 503 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHH
Confidence 3565555455666678899999999999998884333333 22 11 345555555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.72 E-value=16 Score=41.15 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=83.5
Q ss_pred HHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHH--HHHHH--h
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LSVFC--N 434 (690)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l--I~~~~--k 434 (690)
|+.+.+.|++++|.+..+.+...+ +-|...+-.=+-++.+.+++++|+.+.+. .+ -..+++.. =.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 577888999999999999998866 44556677777788889999999966543 22 11223333 45565 6
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+..++|...++ |+.++.. +...=-..+-+.|++++|+++++.+.++
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 789999998888 4444443 4444445667899999999999999776
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=90.64 E-value=5.2 Score=37.92 Aligned_cols=95 Identities=19% Similarity=0.102 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (690)
...|..+...+...|++++|...|+......-.| ...+|..+-..+...|+.++|...++...... .....++..+-
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4567777778888999999999999887653222 23478888888999999999999999887642 22345566666
Q ss_pred HHHH-------HcCChHHHHHHHHH
Q 005580 465 RVSV-------EAGKGDRVYYLLHK 482 (690)
Q Consensus 465 ~~~~-------~~g~~~~A~~ll~~ 482 (690)
..+. +.|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6666 77777755555543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.44 E-value=7.5 Score=35.51 Aligned_cols=120 Identities=9% Similarity=0.000 Sum_probs=86.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~ 437 (690)
+|..+.+.+.......+++.+...+. .+...+|.+|..|++.. ..+..+.+.. .++.+...-++..|-+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 88888888999999999999998874 78889999999999874 3444455542 2456666779999999999
Q ss_pred hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCChhHHHHHHH
Q 005580 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (690)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~ 500 (690)
.+++..++..+.. |.-.++.+... ++++.|.+++.+ .-.|+.|..+..
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~ 133 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLK 133 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHH
Confidence 9999999988732 22233334444 778888887765 124566655333
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.37 E-value=5.7 Score=44.14 Aligned_cols=62 Identities=11% Similarity=0.127 Sum_probs=42.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhh
Q 005580 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (690)
Q Consensus 187 ~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~ 260 (690)
..|+ .+|-..|+.--|..-++.|..+|.+.++.+..+ +++.++++|.-+| .++-+-|.++|.
T Consensus 363 ~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-----------skD~~~AfrIFe 425 (656)
T KOG1914|consen 363 IDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-----------SKDKETAFRIFE 425 (656)
T ss_pred cCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-----------cCChhHHHHHHH
Confidence 3455 677777777777777777777777777776666 7777777777777 344555666663
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=90.26 E-value=7 Score=35.11 Aligned_cols=103 Identities=12% Similarity=0.067 Sum_probs=65.2
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC---cchHH-HHHHHHH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYG-PALSVFC 433 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~-~lI~~~~ 433 (690)
.++-..|+.++|..+|++-...|...+ ...+--+-..+-..|++++|..+|++.... .|+ ..... .+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHHHHHHH
Confidence 345567888888888888888876654 234445556677788888888888877654 244 11111 1122556
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (690)
Q Consensus 434 k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (690)
..|+.++|.+.+-.... ++..-|.--|..|.
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 77888888877765533 34446666665554
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.19 E-value=8.3 Score=39.05 Aligned_cols=146 Identities=14% Similarity=0.071 Sum_probs=102.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~ 439 (690)
..+--.|+-+.+..+....... -.-|....+.++....+.|++.+|...|++.... -.||...|+.+=-+|-+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 3444455555555555443322 2235556667889999999999999999997655 5689999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChhH--HHHHHHHHcchHHHHh
Q 005580 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST--ADVIAKWFNSKEAARL 510 (690)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t--~~~I~~~~~~~~~~~a 510 (690)
+|..-|.+..+--. -+...+|-|--.|.-.|+.+.|..++..-... +..+++ -+....+-..+...+|
T Consensus 152 ~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 152 EARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHH
Confidence 99999988776422 24455666766777889999999999999887 554443 2334444444444333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=90.16 E-value=8 Score=39.86 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHH
Q 005580 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELE 461 (690)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv--~pd~~ty~ 461 (690)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+--+-..|...|+.++|...|+.+.+.-- ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555567777777777776654 2433 2344455666777777777777777765311 11122233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
.+...+...|+.++|..+|++..+. .|...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 3444556778888888888888877 44443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.6 Score=33.94 Aligned_cols=55 Identities=20% Similarity=0.259 Sum_probs=34.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 430 SVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 430 ~~~~k~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
..+.+.|++++|.+.|++..+.. | +...+..+-..+...|++++|..+|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566677777777777776654 3 4455555666666777777777777776654
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=89.91 E-value=30 Score=36.81 Aligned_cols=225 Identities=11% Similarity=0.006 Sum_probs=131.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcccCCcccCCCC-chhhHHhHhhhhccccccccccCC
Q 005580 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH-YNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRD 274 (690)
Q Consensus 197 lI~~~~k~g~~~~A~~lf~~M~~~G~~pd~~t-yn~Ll~~~~~~~~~~~~~~k~g-~~~~A~~vf~~~~~~s~em~~~~g 274 (690)
+-..+...++.++|+.+.+++... .|+-+| |+.-=..+. +.| .+++++..++ ++... .
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i~~-n 102 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVAED-N 102 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHHHH-C
Confidence 333445667888999999988853 344432 332222222 233 4677777774 33221 2
Q ss_pred CCccchhhccccccccccccccCCC--hhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChh
Q 005580 275 MDNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (690)
Q Consensus 275 v~d~~tyn~LI~~~~~~~~~~~~g~--~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~ 352 (690)
-++-..|+..-.. +.+.|. .+++..++++|.+.. .. |..
T Consensus 103 pknyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----pk-----------------------------Ny~ 143 (320)
T PLN02789 103 PKNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----AK-----------------------------NYH 143 (320)
T ss_pred CcchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----cc-----------------------------cHH
Confidence 2243445533222 222333 256677777776542 11 222
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCh----HHHHHHHHHHHHCCCCCCcchH
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPRLRSY 425 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~---g~~----~~A~~l~~~M~~~g~~Pd~~ty 425 (690)
.|+. .--.+.+.|++++|++.++++.+.... |...|+-.--.+.+. |.. +++++...++.... .-|...|
T Consensus 144 AW~~-R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW 220 (320)
T PLN02789 144 AWSH-RQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPW 220 (320)
T ss_pred HHHH-HHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHH
Confidence 3444 445555668899999999999987654 556676655555444 222 45666665555542 2356778
Q ss_pred HHHHHHHHhc----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC------------------ChHHHHHHHHHH
Q 005580 426 GPALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG------------------KGDRVYYLLHKL 483 (690)
Q Consensus 426 ~~lI~~~~k~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g------------------~~~~A~~ll~~M 483 (690)
+-+-..+... +...+|.+.+.+....+ ..+......|++.|+... ..++|..++..|
T Consensus 221 ~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 221 RYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 7777777763 34466888888876643 346778888999998643 235677777777
Q ss_pred H
Q 005580 484 R 484 (690)
Q Consensus 484 ~ 484 (690)
.
T Consensus 300 ~ 300 (320)
T PLN02789 300 E 300 (320)
T ss_pred H
Confidence 3
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=89.80 E-value=5.5 Score=36.66 Aligned_cols=61 Identities=15% Similarity=0.222 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 424 ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
....++..+...|+.++|..+.+.+.... +.|...|..+|.+|...|+..+|.+.|+++..
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34566777788999999999999998764 44888999999999999999999999998854
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=18 Score=36.72 Aligned_cols=158 Identities=8% Similarity=-0.003 Sum_probs=92.5
Q ss_pred cccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHH
Q 005580 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (690)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (690)
+.+.|++++|.+.|++.... -|+.. +. ..+ . -.+..+|-+.++.++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~-~a----~~a-----------------------~-l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGP-YS----QQV-----------------------Q-LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCh-HH----HHH-----------------------H-HHHHHHHHhcCCHHHHHH
Confidence 55689999999999999874 34331 11 000 0 015677889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh--c---------------CC---hHHHHHHHHHHHHCCCCCCcc------hHH-
Q 005580 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSLGINPRLR------SYG- 426 (690)
Q Consensus 374 lf~~M~~~g~~pd~~tyn~LI~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~Pd~~------ty~- 426 (690)
.|++..+.-..-..+-|.-.+.|.+. . .+ ..+|++.|+.+.+. -||.. ..-
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV 168 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999886443334456666666552 1 12 23455666666554 24331 111
Q ss_pred -----------HHHHHHHhcCChHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 427 -----------~lI~~~~k~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
.+-.-|.+.|....|..=|+.+.++ +........-.|+.+|.+.|..++|......+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1223355666666666666666654 333444555566666666666666666555443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=89.33 E-value=1.5 Score=34.13 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=38.3
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
..+.+.|++++|.++|++..+.. +-+...+..+-..+...|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777788888888777765 225566677777777778888887777776543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.14 E-value=14 Score=40.72 Aligned_cols=155 Identities=13% Similarity=0.063 Sum_probs=109.1
Q ss_pred hhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHH
Q 005580 326 QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405 (690)
Q Consensus 326 ~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~ 405 (690)
.++.|-...+...|+..+.-.-.++.. |-- +-..|....+.++.++.|++-.+-... |..+|-.=-..+.-.+++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~l-yI~-~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNSL-YIK-RAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccchH-HHH-HHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHH
Confidence 344444455555666555432222221 323 557788999999999999988875432 33445444444555678889
Q ss_pred HHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005580 406 AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (690)
Q Consensus 406 A~~l~~~M~~~g~~P-d~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (690)
|..=|++.++. .| +++.|--+--+.-|.+.+++++..|++..++ +.--...||..-..+...+++++|.+.++.-.
T Consensus 413 A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 413 AIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 98888877654 33 4566666666667889999999999998765 55567888888899999999999999999887
Q ss_pred Hc
Q 005580 485 TS 486 (690)
Q Consensus 485 ~~ 486 (690)
+.
T Consensus 490 ~L 491 (606)
T KOG0547|consen 490 EL 491 (606)
T ss_pred hh
Confidence 76
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.12 E-value=13 Score=39.10 Aligned_cols=131 Identities=15% Similarity=0.191 Sum_probs=88.8
Q ss_pred hhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhc----cCHHHHHHHH
Q 005580 300 FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK----YAFQRGFEIY 375 (690)
Q Consensus 300 ~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~----g~~~~A~~lf 375 (690)
+++...+++.|.+.|++-+..+|- .++ +|...+.. -.+.+|..+|
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~l-----aA~--------------------------~i~~~~~~~~~~~~~~ra~~iy 126 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYL-----AAL--------------------------IILEEEEKEDYDEIIQRAKEIY 126 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHH-----HHH--------------------------HHHHhcccccHHHHHHHHHHHH
Confidence 566788889999999988887764 111 11211111 2457899999
Q ss_pred HHHHhCCC---CCCHHHHHHHHHHHHhcCCh----HHHHHHHHHHHHCCCCCCc-chHHHHHHHHHhcCC---hHHHHHH
Q 005580 376 EKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGD---VDKACSV 444 (690)
Q Consensus 376 ~~M~~~g~---~pd~~tyn~LI~~~~~~g~~----~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~k~g~---~~~A~~l 444 (690)
+.|++... .++-+++.+|+.. ...++ +.++.+++.+.+.|+..+- .-+-+-|-+++..-. +..+.++
T Consensus 127 ~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l 204 (297)
T PF13170_consen 127 KEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIEL 204 (297)
T ss_pred HHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99998753 3677888888776 33333 5678888888888876543 244444444544322 4568889
Q ss_pred HHHHHhCCCCCCHHHHHHH
Q 005580 445 EEHMLEHGVYPEEPELEAL 463 (690)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~L 463 (690)
++.+.+.|+++....|..+
T Consensus 205 ~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 205 YNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHcCCccccccccHH
Confidence 9999999999888887754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.96 E-value=4.4 Score=47.02 Aligned_cols=224 Identities=12% Similarity=0.016 Sum_probs=118.3
Q ss_pred HhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CCHHHHH
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LGQYHYN 230 (690)
Q Consensus 160 ~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~-~G~~--------pd~~tyn 230 (690)
+...|+.+.|++-...++ .. ..|..|-+.|.+..+++-|.-.+..|.. .|.+ |+.. .
T Consensus 738 yvtiG~MD~AfksI~~Ik------S~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~--e 803 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIK------SD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED--E 803 (1416)
T ss_pred EEEeccHHHHHHHHHHHh------hh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch--h
Confidence 345677888888887773 33 8999999999999999999998888873 2221 2111 0
Q ss_pred HHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHH
Q 005580 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (690)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM 310 (690)
+=...++- ..|.+++|..++. +-.+ |..|=+- |-..|.+++|.++-+.-
T Consensus 804 akvAvLAi---------eLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 804 AKVAVLAI---------ELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETK 852 (1416)
T ss_pred hHHHHHHH---------HHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhc
Confidence 01111111 3466777777763 1111 1111122 44456666665554322
Q ss_pred HHcCCCCCccccchhhhhhccc----------c---ccCCC----------chhhhhcCCCCChhhhHHHHHHHHHhccC
Q 005580 311 ENLGQFSNGHMKLNSQLLDGRS----------N---LERGP----------DDQSRKKDWSIDNQDADEIRLSEDAKKYA 367 (690)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~----------~---~a~~~----------~~~m~~~g~~pd~~tyn~~lI~~~~k~g~ 367 (690)
-+--++..-.-|. .-+++-. + .|..+ ...-+++.-.|....|.. ..+-..|+
T Consensus 853 DRiHLr~Tyy~yA--~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWg---qYlES~Ge 927 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYA--KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWG---QYLESVGE 927 (1416)
T ss_pred cceehhhhHHHHH--HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHH---HHHhcccc
Confidence 1111111111111 1111110 0 01111 111222333345555555 23335688
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005580 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (690)
Q Consensus 368 ~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~ 447 (690)
++.|+.+|...+. |-++++..|-.|+.++|-++-++- | |....-.|-..|-..|++.+|..+|-+
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888887654 556677777777777777776542 1 334444555666666666666666654
Q ss_pred H
Q 005580 448 M 448 (690)
Q Consensus 448 M 448 (690)
.
T Consensus 993 A 993 (1416)
T KOG3617|consen 993 A 993 (1416)
T ss_pred H
Confidence 3
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.12 E-value=19 Score=40.89 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhh
Q 005580 192 FQLRVELDMCSKRGDVM--GAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (690)
Q Consensus 192 ~tyn~lI~~~~k~g~~~--~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~ 260 (690)
.-+++.=++|.|.++.. +-+.=+++|++.|-.|+.......+ +| .|.+.+|.++|.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~-Ay------------~gKF~EAAklFk 656 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVF-AY------------QGKFHEAAKLFK 656 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHH-Hh------------hhhHHHHHHHHH
Confidence 45666777777776643 4444566788889889887655443 33 378889999985
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=87.54 E-value=9.7 Score=34.17 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=64.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHCCCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---H-HHHHHHHHHHH
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE---E-PELEALLRVSV 468 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd---~-~ty~~Li~~~~ 468 (690)
.++-..|+.++|..++++-...|..... ..+-.+-..+-..|+.++|..++++..... |+ . .....+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 4566789999999999999998876553 445556677888999999999999887642 43 1 11122234667
Q ss_pred HcCChHHHHHHHHHHHH
Q 005580 469 EAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 469 ~~g~~~~A~~ll~~M~~ 485 (690)
..|+.++|...+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88999999988765443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=87.34 E-value=12 Score=39.19 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCC---ccchhhc
Q 005580 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (690)
Q Consensus 207 ~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~---d~~tyn~ 283 (690)
+.+.+.+++.|++.|++-+.++|-+-.-...... .....-.+.+|..+| ..|.+++.+- +.+++.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 5566789999999999999988877544444210 000112355667777 3676654444 5666766
Q ss_pred cccc
Q 005580 284 GSSP 287 (690)
Q Consensus 284 LI~~ 287 (690)
|+.+
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 6666
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=87.13 E-value=56 Score=37.47 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=150.0
Q ss_pred HHhhhcCcchHhHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH--HHHHHHHH
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--KLGQ--YHYNVLLY 234 (690)
Q Consensus 159 ~~~~~~~~~~A~~vf~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G~--~pd~--~tyn~Ll~ 234 (690)
-+++.++.++|-+.+.....+...-....+.+...|.-+-+..+++-+.-..+.+=. ..+.|+ -+|. +.|++|-+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda-iiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA-IIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH-HHHhhcccCcHHHHHHHHHHHH
Confidence 566888999999999887654322222233344678888777777766554444322 223343 3554 56888888
Q ss_pred HHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchhhccccccccccccccCCChhhHHHHHHHHH---
Q 005580 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE--- 311 (690)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~--- 311 (690)
-|. +.|.+++|.++|. +.|..-..+. -|+.+-++ |++-..-.-+. .|.
T Consensus 257 YYI----------r~g~~ekarDvye------eai~~v~tvr---DFt~ifd~------Ya~FEE~~~~~----~me~a~ 307 (835)
T KOG2047|consen 257 YYI----------RSGLFEKARDVYE------EAIQTVMTVR---DFTQIFDA------YAQFEESCVAA----KMELAD 307 (835)
T ss_pred HHH----------HhhhhHHHHHHHH------HHHHhheehh---hHHHHHHH------HHHHHHHHHHH----HHhhhh
Confidence 888 8899999999995 2222210110 13333333 22111000000 011
Q ss_pred -HcCCCCCccccc-----hhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCC
Q 005580 312 -NLGQFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM 385 (690)
Q Consensus 312 -~~g~~Pd~~ty~-----~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~p 385 (690)
+.|-.-|.+... ...|++..- .+.+...-+.-.-++.+|-. -+ -+..|+..+-...|.+.... +.|
T Consensus 308 ~~~~n~ed~~dl~~~~a~~e~lm~rr~----~~lNsVlLRQn~~nV~eW~k-RV--~l~e~~~~~~i~tyteAv~~-vdP 379 (835)
T KOG2047|consen 308 EESGNEEDDVDLELHMARFESLMNRRP----LLLNSVLLRQNPHNVEEWHK-RV--KLYEGNAAEQINTYTEAVKT-VDP 379 (835)
T ss_pred hcccChhhhhhHHHHHHHHHHHHhccc----hHHHHHHHhcCCccHHHHHh-hh--hhhcCChHHHHHHHHHHHHc-cCc
Confidence 000001111110 001111110 01111111111223334443 22 23456667777777777653 222
Q ss_pred ------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHH-------hcCChHHHHHHHHHHHhC-
Q 005580 386 ------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-------NNGDVDKACSVEEHMLEH- 451 (690)
Q Consensus 386 ------d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~-------k~g~~~~A~~l~~~M~~~- 451 (690)
-...|..+-+.|-..|+++.|..+|++-.+... .+-+-|-..+| +..+++.|+++.+.....
T Consensus 380 ~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP 455 (835)
T KOG2047|consen 380 KKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVP 455 (835)
T ss_pred ccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCC
Confidence 234577888888889999999999987655432 23333333343 556667777776654311
Q ss_pred ---------C-CCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 452 ---------G-VYP------EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 452 ---------g-v~p------d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
| -.+ ....|...++.--..|-++....+++++.+. +-.+|.
T Consensus 456 ~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL-riaTPq 512 (835)
T KOG2047|consen 456 TNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL-RIATPQ 512 (835)
T ss_pred CchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-hcCCHH
Confidence 1 111 2334555556556677777777788887765 234555
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=86.60 E-value=1.7 Score=35.23 Aligned_cols=59 Identities=17% Similarity=0.272 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHC----C-CCCC-cchHHHHHHHHHhcCChHHHHHHHHH
Q 005580 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEH 447 (690)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g-~~Pd-~~ty~~lI~~~~k~g~~~~A~~l~~~ 447 (690)
+|+.+-..|...|++++|++.|++..+. | -.|+ ..+|+.+-..|...|+.++|.+.+++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4455555555555555555555544322 1 1122 33444444555555555555555544
|
... |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.60 E-value=53 Score=35.73 Aligned_cols=258 Identities=9% Similarity=-0.039 Sum_probs=133.3
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccc
Q 005580 195 RVELDMCS--KRGDVMGAIRLYDKAQR-EGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 195 n~lI~~~~--k~g~~~~A~~lf~~M~~-~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~ 271 (690)
..-|.+++ -.++-..|..+|-.+.. .-++-|++....+-+.+. ..|+.++|...|.. ..|.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~d 262 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCAN 262 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCC
Confidence 33444443 34666666666666553 346677888888888888 88999999999951 12222
Q ss_pred cCCCCccchhhccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccc----cccCCCchhhhhcCC
Q 005580 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS----NLERGPDDQSRKKDW 347 (690)
Q Consensus 272 ~~gv~d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~----~~a~~~~~~m~~~g~ 347 (690)
-..+...-.|..| +.+.|+.++...+...+.... -.|-. ...+.++- +.++..+ ....+.+
T Consensus 263 py~i~~MD~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~----~~ta~-~wfV~~~~l~~~K~~~rAL-~~~eK~I 327 (564)
T KOG1174|consen 263 PDNVEAMDLYAVL---------LGQEGGCEQDSALMDYLFAKV----KYTAS-HWFVHAQLLYDEKKFERAL-NFVEKCI 327 (564)
T ss_pred hhhhhhHHHHHHH---------HHhccCHhhHHHHHHHHHhhh----hcchh-hhhhhhhhhhhhhhHHHHH-HHHHHHh
Confidence 2111111115555 445667777666666554321 00000 01111111 1111100 0111222
Q ss_pred CCChhhhHHHHH--HHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchH
Q 005580 348 SIDNQDADEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (690)
Q Consensus 348 ~pd~~tyn~~lI--~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (690)
..|.-..-..++ ..+...|+.++|.--|++...-. +-+...|--|++.|-..|++.+|.-+-+.-.+. +.-+..+.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 222222223233 34556788888888888766531 135678999999999999998887665543322 11122332
Q ss_pred HHH-HHHHH-hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 426 GPA-LSVFC-NNGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 426 ~~l-I~~~~-k~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+ -..|. .-.--|+|.++++.-.. +.|+-. .-+.+-..+...|+.+++..++++-...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 222 01111 11223556666655433 334422 2334445556677777777777766655
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.33 E-value=5.2 Score=31.71 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=31.7
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|.+.+++++|.++++.+...+ +.+...|...=..+.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4556666666666666665542 113444444455556666666666666666655
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=85.27 E-value=50 Score=39.23 Aligned_cols=228 Identities=11% Similarity=0.027 Sum_probs=141.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhHHhHhhhhccccccccccCCCCccchh
Q 005580 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (690)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~G~~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~vf~~~~~~s~em~~~~gv~d~~ty 281 (690)
...+++..|+...+.+.+. .|| ..|..++.|+... +.|+.++|..+++ ..... +..|..|-
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~--------r~gk~~ea~~~Le-------~~~~~-~~~D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLF--------RLGKGDEALKLLE-------ALYGL-KGTDDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHH--------HhcCchhHHHHHh-------hhccC-CCCchHHH
Confidence 4568899999999988764 244 3567777777743 6788999998874 22211 22277888
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHHcCCCCCccccchhhhhhccccccCCCchhhhhcCCCCChhhhHHHHHHH
Q 005580 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (690)
Q Consensus 282 n~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (690)
.++-.. |...++.++|..+++...+. -|+..- . ..+--+
T Consensus 81 q~l~~~------y~d~~~~d~~~~~Ye~~~~~--~P~eel--------------------------------l-~~lFma 119 (932)
T KOG2053|consen 81 QFLQNV------YRDLGKLDEAVHLYERANQK--YPSEEL--------------------------------L-YHLFMA 119 (932)
T ss_pred HHHHHH------HHHHhhhhHHHHHHHHHHhh--CCcHHH--------------------------------H-HHHHHH
Confidence 888888 99999999999999876553 233110 0 114456
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-CcchHHHHHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLGINP-RLRSYGPALS 430 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~----------~~~A~~l~~~M~~~g~~P-d~~ty~~lI~ 430 (690)
|.+.+.+.+-.+.=-+|-+ ..+-+...|=++|+.+...-. +.-|.+.++.+.+.+-+. ...-.-.-+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 7776665443333222322 233355666666666665422 123666666666553111 1111112223
Q ss_pred HHHhcCChHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCh
Q 005580 431 VFCNNGDVDKACSVEE-HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~-~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (690)
.+-..|+.++|++++. ...+.-..-+...-+--++.+...+++.+..++-.++..+ +.+.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k--~~Dd 259 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK--GNDD 259 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh--CCcc
Confidence 3445688999999884 4444444456666677788889999999999999999888 5544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=84.96 E-value=14 Score=38.16 Aligned_cols=94 Identities=13% Similarity=0.126 Sum_probs=70.3
Q ss_pred hhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----cch
Q 005580 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRS 424 (690)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~t 424 (690)
.|.. .+..+.+.|++++|...|+.+...- |+. ..+-.+-..|...|++++|...|+.+.+.- |+ ...
T Consensus 145 ~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dA 219 (263)
T PRK10803 145 DYNA-AIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADA 219 (263)
T ss_pred HHHH-HHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHH
Confidence 4555 5555567799999999999999753 432 466678888999999999999999998651 33 122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 425 YGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 425 y~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
+--+...+-..|+.++|.++|+...+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445566899999999999988764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=84.79 E-value=28 Score=35.37 Aligned_cols=87 Identities=8% Similarity=-0.076 Sum_probs=54.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCCCcchHHHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~k~ 435 (690)
+|.-|=...-..+|...+..+... .-..-+ .+.+-|-+.|.+..|..=|+.+.+. +........-.++.+|-+.
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 555555555555555544444321 001111 4455688889998888888888875 3333344556788888899
Q ss_pred CChHHHHHHHHHH
Q 005580 436 GDVDKACSVEEHM 448 (690)
Q Consensus 436 g~~~~A~~l~~~M 448 (690)
|..++|..+..-+
T Consensus 226 g~~~~a~~~~~~l 238 (243)
T PRK10866 226 QLNAQADKVAKII 238 (243)
T ss_pred CChHHHHHHHHHH
Confidence 9999988876654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=84.73 E-value=14 Score=40.72 Aligned_cols=63 Identities=14% Similarity=-0.035 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
...|++ +-.+|.+.|++++|...|++-.+. .||. .+|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 75 a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345666 778888899999999999887764 4553 46888899999999999999999888775
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=84.50 E-value=17 Score=37.73 Aligned_cols=113 Identities=15% Similarity=0.205 Sum_probs=72.9
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHC----CCCCC--cchHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALS 430 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~Pd--~~ty~~lI~ 430 (690)
.+..|.+.|++..|-+++.++- ..|-.. |++++|.+.+++-.+. | .+. ..++.-+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 5566777777777766655543 355555 7888888888775432 3 121 245667778
Q ss_pred HHHhcCChHHHHHHHHHHHhCCC-----CCCHHH--HHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005580 431 VFCNNGDVDKACSVEEHMLEHGV-----YPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (690)
Q Consensus 431 ~~~k~g~~~~A~~l~~~M~~~gv-----~pd~~t--y~~Li~~~~~~g~~~~A~~ll~~M~~~~ 487 (690)
.+.+.|+.++|.++|++....-+ .+++.. +.++| ++...|+...|.+.|++.....
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l-~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAIL-CHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHH-HHHHTT-HHHHHHHHHHHGTTS
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhC
Confidence 89999999999999999876533 223322 23444 5566789999999999998763
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=84.37 E-value=12 Score=41.08 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=57.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 005580 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (690)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~~k~g~~~~A~~l~~~M~~~ 451 (690)
+.+...|+.+-.+|.+.|++++|+..|++-.+. .||.. +|..+-.+|.+.|+.++|.+.+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 346788999999999999999999999986654 57754 5899999999999999999999988775
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=84.24 E-value=15 Score=34.65 Aligned_cols=86 Identities=9% Similarity=-0.038 Sum_probs=35.2
Q ss_pred HhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005580 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN-NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (690)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k-~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (690)
...|++++|..+|+-.... .|....|--=+.++++ .|++++|...|.....-.. -|...+-.+=.++.+.|+.+.|
T Consensus 46 y~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 46 MEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHHH
Confidence 3444444444444444332 2333222222222222 3444444444444443331 2333333344444444444444
Q ss_pred HHHHHHHHHc
Q 005580 477 YYLLHKLRTS 486 (690)
Q Consensus 477 ~~ll~~M~~~ 486 (690)
.+-|+.-...
T Consensus 123 ~~aF~~Ai~~ 132 (157)
T PRK15363 123 IKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHH
Confidence 4444444443
|
|
| >KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.02 E-value=5.3 Score=41.24 Aligned_cols=59 Identities=12% Similarity=0.047 Sum_probs=45.0
Q ss_pred ecCCCccccccCCccccccccccccccccccccccccccchhhccCcccccCCccCCcCC
Q 005580 81 TRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSREMSSGNSSLRSKD 140 (690)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (690)
.+-..+++.-+.+..++.+..+. +..++.+...+|....|+.+-.|++...........
T Consensus 31 f~da~vq~~~~~~gdle~vak~l-dssg~~l~~~rYgd~~fdil~~gg~~~pg~~~sddg 89 (412)
T KOG2297|consen 31 FRDAVVQGLEDNAGDLELVAKSL-DSSGNDLDYRRYGDILFDILFAGGRLQPGGVKSDDG 89 (412)
T ss_pred HHHHHHHHHHhcCccHHHHHHHH-HhccccccHHHHHHHHHHHHHHhcccCCCCcccccc
Confidence 55567888888888888888776 556678888999999999998888876655544443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=83.22 E-value=27 Score=42.20 Aligned_cols=130 Identities=9% Similarity=0.056 Sum_probs=79.1
Q ss_pred CChhhhHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhcCChHHHHHH----------------
Q 005580 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS---LTAVGRMAMSMGDGDMAFDM---------------- 409 (690)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~t---yn~LI~~~~~~g~~~~A~~l---------------- 409 (690)
|+.......||..|-..+++++|.++.++-.+. .|+... |..+ .+.+.++.++|..+
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVE 103 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHH
Confidence 443333334888888899999999998865543 343322 2222 44555555555444
Q ss_pred --HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 410 --VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 410 --~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
...|...+ -+...+-.+-.+|-+.|+.++|..+|+++.+.. .-|....|-+-..|+.. ++++|..++.+-...
T Consensus 104 ~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 104 HICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11111111 011445556666777788888888888888776 34667777777777777 777777776665443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=83.16 E-value=20 Score=33.76 Aligned_cols=89 Identities=9% Similarity=-0.001 Sum_probs=70.7
Q ss_pred HHHHhccCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~ 438 (690)
.-+...|++++|..+|+-+..- .|... -|-.|=-++-..|++++|++.+........ -|...|-.+=.++.+.|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 4567899999999999998874 35444 455555566668999999999999887753 4667777788889999999
Q ss_pred HHHHHHHHHHHhC
Q 005580 439 DKACSVEEHMLEH 451 (690)
Q Consensus 439 ~~A~~l~~~M~~~ 451 (690)
+.|.+-|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=82.86 E-value=5.3 Score=31.25 Aligned_cols=26 Identities=15% Similarity=0.302 Sum_probs=10.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHH
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (690)
|..+-..+...|++++|+..|.+..+
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~ 31 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIE 31 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33333344444444444444444333
|
... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.66 E-value=94 Score=36.82 Aligned_cols=22 Identities=0% Similarity=-0.038 Sum_probs=16.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHH
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMC 379 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~ 379 (690)
|-..|-..|++.+|..+|-+.+
T Consensus 973 laR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 973 LARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHHhhhhHHHHHHHHHHHHHH
Confidence 5566777778888888887654
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=82.57 E-value=61 Score=34.46 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005580 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (690)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (690)
..+.+..|.-+...|+...|.++..+. .+ ||..-|-.-|.+|+..+++++-.++-.. . -.++-|..+++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~ 246 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEA 246 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHH
Confidence 345666778888899999998887654 34 8999999999999999999887776432 1 234889999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCChhHHHHHHHHHcchHHHHhh
Q 005580 467 SVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLG 511 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a~ 511 (690)
|.+.|...+|..+..++. + -.-+..|.+.|...+|.
T Consensus 247 ~~~~~~~~eA~~yI~k~~-------~--~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPKIP-------D--EERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHHCCCHHHHHHHHHhCC-------h--HHHHHHHHHCCCHHHHH
Confidence 999999999998887732 1 23356666666655554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.44 E-value=61 Score=33.04 Aligned_cols=123 Identities=10% Similarity=0.053 Sum_probs=90.4
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k 434 (690)
+.-+....|+.+.|...++++..+= |.. .-+.+| -+-..|.+++|.++++.+.+.. .-|.++|--=|...--
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 4444456788899999999988753 332 222222 1344688999999999988775 4566777655555556
Q ss_pred cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|.--+|.+-+.+-.+. +..|...|.-|-..|...|++++|.--+++|.-.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 67777777766666554 6679999999999999999999999999999876
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.98 E-value=6.2 Score=41.00 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=68.1
Q ss_pred ccchhhccccccccccccccCCChhhHHHHHHHHHHcC---CCCCccccchhhhhhccccccCCCchhhhhcCCCCChhh
Q 005580 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (690)
Q Consensus 277 d~~tyn~LI~~~~~~~~~~~~g~~~~A~~lf~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t 353 (690)
.+++-..++.. -.+..+++++...+-.+...- ..|+...|
T Consensus 63 s~~~Vd~~V~v------~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~------------------------------- 105 (418)
T KOG4570|consen 63 SSLTVDRLVDV------ISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH------------------------------- 105 (418)
T ss_pred ceeehhhhhhc------cccccchhHHHHHHHHHhcCcchhhhccccHH-------------------------------
Confidence 45555666666 666778888887776665431 22222222
Q ss_pred hHHHHHHHHHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 005580 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (690)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (690)
.+--++-.-+++++.-++..=...|+-||-+|++.||+.+.+.+++.+|..+.-.|...
T Consensus 106 ----~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 ----TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ----HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 23334455677888888888888888889999999999988888888888887776654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=81.57 E-value=69 Score=36.52 Aligned_cols=89 Identities=16% Similarity=0.118 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 005580 369 QRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (690)
Q Consensus 369 ~~A~~lf~~M~~~-g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~ 447 (690)
..+.+........ ....+...|.++--.+...|++++|...+++....+ |+...|..+-..+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444433332 233455678777666667899999999999988775 7888999999999999999999999988
Q ss_pred HHhCCCCCCHHHHH
Q 005580 448 MLEHGVYPEEPELE 461 (690)
Q Consensus 448 M~~~gv~pd~~ty~ 461 (690)
... +.|...||-
T Consensus 479 A~~--L~P~~pt~~ 490 (517)
T PRK10153 479 AFN--LRPGENTLY 490 (517)
T ss_pred HHh--cCCCCchHH
Confidence 765 445555543
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=81.41 E-value=3.7 Score=33.15 Aligned_cols=63 Identities=21% Similarity=0.230 Sum_probs=49.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005580 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 423 ~ty~~lI~~~~k~g~~~~A~~l~~~M~~~----gv-~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
.+|+.+-..|...|+.++|...|++..+. |- .|+ ..+++.|-..|...|+.++|.+++++-.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46888888999999999999999987643 21 233 56788888899999999999999987543
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.21 E-value=5.9 Score=31.38 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=26.7
Q ss_pred HHhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 005580 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (690)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (690)
|.+.+++++|.++++.+...+. .+...|...-..+.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4455555555555555554421 1334444444555555555555555555443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=80.59 E-value=73 Score=33.87 Aligned_cols=130 Identities=9% Similarity=-0.018 Sum_probs=93.5
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (690)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g~~pd~-~tyn~LI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~ 435 (690)
+-..+...++.++|+.+.++..+. .|+. .+|+.--..+.+.| +++++++.++++.+..- -+..+|+.---.+-+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 445667788999999999998874 3444 34555545556667 67999999999887632 2334565443344455
Q ss_pred CC--hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCChh
Q 005580 436 GD--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 436 g~--~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (690)
|. .+++..+++.|.+..- -|...|+..--.+.+.|+++++++.++++.+. .+...
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~ 176 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNN 176 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCch
Confidence 55 3678888888887543 37788888888888889999999999999987 55444
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.56 E-value=14 Score=38.44 Aligned_cols=103 Identities=10% Similarity=0.046 Sum_probs=51.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 005580 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (690)
Q Consensus 382 g~~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~k~g~~~~A~~l~~~M~~~gv~pd~~ 458 (690)
|......|...++..-....+++++...+-.+... -..|+...|+ +| -+|-.-+.+++..+...=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~-~i-rlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT-WI-RLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH-HH-HHHHccChHHHHHHHhCcchhccccchh
Confidence 44444445555555545455555555555554432 1233333332 11 2223334555555555555556666666
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+++.||+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666555555554443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=80.13 E-value=32 Score=40.78 Aligned_cols=118 Identities=18% Similarity=0.193 Sum_probs=92.0
Q ss_pred HhccCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 005580 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~k~g~~~~ 440 (690)
...+++..|+...+.+.++. ||. .|..++.++ .+.|+.++|..+++.....+.. |..|..++-..|-..|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 45678899999998877652 443 456666665 4689999999999988776654 88999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005580 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
|..+|++... ..|+..-...+..+|.+.+.+.+-.+.=-+|-+.
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999865 4688888889999999999887544443344333
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 690 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 2e-82 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 1e-77 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.9 bits (139), Expect = 9e-09
Identities = 79/566 (13%), Positives = 159/566 (28%), Gaps = 175/566 (30%)
Query: 8 NTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLST 67
+ + +LF L K + + +F+ L+ Q + T
Sbjct: 59 DAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 68 TETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSR 127
+ RD+ D + K N SR +LK R
Sbjct: 110 RMYIEQ---------------------RDRL------YNDNQVFAKYNVSRLQ-PYLKLR 141
Query: 128 EMSSGNSSLRSKDKKIGI-------KSSKTVNREVDNQKMEQRTNDSGQY--KVRGITDE 178
+ LR K + I K+ + +V Q D + +
Sbjct: 142 QALL---ELRP-AKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNL------ 189
Query: 179 KGSKKSKKDRSEQFQ---LRVELDMCSKRGDVMGAIRLYDKAQREGIK---LGQYHYNVL 232
+ S + E Q +++ + S R D I+L + + ++ + + N L
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 233 LYL---CSSAAVGVVKPAKSGSGMRTLDTFEVS--TMNSTELGDSRDMDNNGQLDYGSSP 287
L L ++ + + F +S + +T R
Sbjct: 248 LVLLNVQNA---------------KAWNAFNLSCKILLTT-----RFKQV---------- 277
Query: 288 MIDKLESNSSYRF--DDLDSTFNEKENLGQFSNG-HMK---LNSQLLDGRSNL------E 335
D L + ++ D T E + L ++L + E
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAE 335
Query: 336 RGPDDQSRKKDW--------------SIDNQDADEIRLSEDAKKYA----FQRGFEIYEK 377
D + +W S++ + E R K + F I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTI 390
Query: 378 -MCL---------DEVPMNE---ASLTAVGRMAMSMGDGDMAFDM-VKRMKSLGINPRL- 422
+ L V +N+ SL ++ + ++ VK ++ +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY----PEEPELEALLRVSVEAGKGDRVY- 477
Y + F ++ + ++++ H + E PE L R V+
Sbjct: 451 DHYNIPKT-FDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFL 498
Query: 478 ---YLLHKLR--TSVRKVSPSTADVI 498
+L K+R ++ S S + +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTL 524
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 77/582 (13%), Positives = 154/582 (26%), Gaps = 202/582 (34%)
Query: 152 NREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKK------DRSEQF---QLRVELDMCS 202
E+D+ + + SG ++ K + +K + +F ++ E
Sbjct: 48 KEEIDH-IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE---QR 103
Query: 203 KRGDVMGAIRLY----DKAQREGIKLGQYHY----------NVLLYLCSSAAVGVVKPAK 248
+ + R+Y D+ + +Y+ LL L + V +
Sbjct: 104 QPSMMT---RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID---- 156
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
G+ LG G + + + +
Sbjct: 157 ---GV---------------LG------------SGKTWVA-----LDVCLSYKVQCKMD 181
Query: 309 EKENLGQF--SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + + +L+ L D +W+ + + I+L + +
Sbjct: 182 ----FKIFWLNLKNCNSPETVLEMLQKLLYQID-----PNWTSRSDHSSNIKLRIHSIQA 232
Query: 367 AFQRGF--EIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR 421
+R + YE CL V + A AF++ K L + R
Sbjct: 233 ELRRLLKSKPYEN-CLLVLLNV----QNAKAWN-----------AFNL--SCKIL-LTTR 273
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLL 480
+ V D A + L+H E+++LL ++ D
Sbjct: 274 FKQ------VT----DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD------ 317
Query: 481 HKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKG 540
L V +P +IA E+ R G W+ W
Sbjct: 318 --LPREVLTTNPRRLSIIA------ESIRDGLATWDN------------------WKHVN 351
Query: 541 KWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEK-------FAESVASIAIKRERNSSFQ 593
++ + ++ L+P E K F S I
Sbjct: 352 CDKLTTII------------ESSLNVLEPAEYRKMFDRLSVFPPSA-HIPTIL-----LS 393
Query: 594 KFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWP---LIVLHN 650
W D V+ VVN + + +K P I + +
Sbjct: 394 LI--WFD--VIKSDVMV-------------------VVNKLHKYSLVEKQPKESTISIPS 430
Query: 651 --RRITGHKMDQP-VNRALIEKWKNADAL-YATPTGSNDDCY 688
+ ++ ++R++++ + D Y
Sbjct: 431 IYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
|
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-05
Identities = 14/91 (15%), Positives = 32/91 (35%), Gaps = 11/91 (12%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATPTG--------SNDDCY 688
++ + + L TP+ DD +
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYDDRF 117
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 690 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.25 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.23 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.01 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.61 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.15 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.62 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.22 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.45 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.42 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.39 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.25 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.18 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.03 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 95.71 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.49 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 95.48 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 95.47 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 95.36 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.95 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 94.92 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 94.64 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 94.4 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 94.1 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 93.73 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 93.62 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 92.06 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 91.27 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 90.26 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 89.72 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 89.17 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 86.62 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.25 E-value=4e-08 Score=64.78 Aligned_cols=314 Identities=9% Similarity=-0.094 Sum_probs=186.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 87531395417689999874289888789885999999999999159988999999999992999899999999999981
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (690)
..-+.++.++|.+.++.+.+.. | -+...+..+-..+.+.|++++|+..|++..+.. +-+..++..+-..+.
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~--p-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~- 78 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE--P-----DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK- 78 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH-
T ss_conf 9998699999999999999868--9-----989999999999998699999999999999859-998999999999964-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 44587666888955668767532024500001468988631002012553111112247883559999999997399887
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd 318 (690)
+.|+.++|...+. ..... ...+...+...... .........+...............
T Consensus 79 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (388)
T d1w3ba_ 79 ---------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQYNPDLY 135 (388)
T ss_dssp ---------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHHCTTCT
T ss_pred ---------HHCCCCCCCCCCC-------CCCCC-CCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ---------2000222222222-------12112-22222222222222------2222222222222111222222222
Q ss_pred CCCCCHHHHHHCCC--CCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 32100256650112--2358995122103788785632899998898106889999999999759999999999999999
Q 005580 319 GHMKLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (690)
Q Consensus 319 ~~ty~~~~li~g~~--~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~ 396 (690)
...+.......... ..+....... ....|+.......+...+...+..++|...+++..... +-+...|..+...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 212 (388)
T d1w3ba_ 136 CVRSDLGNLLKALGRLEEAKACYLKA--IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNV 212 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHH--HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_conf 22222222221100013567888874--02586106899863630102471999999999999849-4649999997155
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHH
Q ss_conf 99459967999999999987998774009999999994699589999999998679989999999999999982994799
Q 005580 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (690)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (690)
+...|++++|...+........ .+...+..+-..+.+.|+.++|...|++..+.. +-+...|..+-..+...|+.++|
T Consensus 213 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A 290 (388)
T d1w3ba_ 213 LKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEA 290 (388)
T ss_dssp HHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
T ss_conf 2200529999999998577755-479999999999998789999999999999849-99899999999999974879999
Q ss_pred HHHHHHHHHCCCCCCHH-HHHH-HHHHHCCHHHHHHH
Q ss_conf 99999999737999944-9999-99997064988710
Q 005580 477 YYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLG 511 (690)
Q Consensus 477 ~~ll~~M~~~~~~~~p~-t~~~-I~~~~~~~~~~~a~ 511 (690)
...++..... .+... .+.. ...+...+...+|.
T Consensus 291 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~ 325 (388)
T d1w3ba_ 291 EDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHCC--CCCCCHHHHHHHHHHHHCCCHHHHH
T ss_conf 9999865404--8730010157999999878999999
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.23 E-value=6.4e-08 Score=63.51 Aligned_cols=269 Identities=14% Similarity=0.001 Sum_probs=124.7
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 87531395417689999874289888789885999999999999159988999999999992999899999999999981
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (690)
-..+.++.++|.+.|+...+.. | -+...|..+...+.+.|++++|+..+........... ............
T Consensus 42 ~~~~~~~~~~A~~~~~~al~~~--p-----~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 113 (388)
T d1w3ba_ 42 IHFQCRRLDRSAHFSTLAIKQN--P-----LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFI-DGYINLAAALVA 113 (388)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--C-----CCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCC
T ss_conf 9998699999999999999859--9-----9899999999996420002222222221211222222-222222222222
Q ss_pred CCC-CCC----------C-------------CCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCC
Q ss_conf 445-876----------6-------------6888955668767532024500001468988631002012553111112
Q 005580 239 AAV-GVV----------K-------------PAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLES 294 (690)
Q Consensus 239 ~~~-~~~----------~-------------~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~ 294 (690)
... ... . ....+....+...+. +.... ...+...+..+-.. +
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~------~ 179 (388)
T d1w3ba_ 114 AGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------F 179 (388)
T ss_dssp HSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------H
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-------HHHCC-CCCHHHHHHHHCCC------C
T ss_conf 2222222222111222222222222222222211000135678888-------74025-86106899863630------1
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 24788355999999999739988732100256650112235899512210378878563289999889810688999999
Q 005580 295 NSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEI 374 (690)
Q Consensus 295 ~~~g~~~~A~~l~~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~l 374 (690)
...+.+++|...+.+.... .|+.. ..+.. +-..+...|+.++|...
T Consensus 180 ~~~~~~~~A~~~~~~al~~--~p~~~-------------------------------~~~~~-l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 180 NAQGEIWLAIHHFEKAVTL--DPNFL-------------------------------DAYIN-LGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HTTTCHHHHHHHHHHHHHH--CTTCH-------------------------------HHHHH-HHHHHHTTTCTTHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH--CCCCH-------------------------------HHHHH-HHHHHHCCCCHHHHHHH
T ss_conf 0247199999999999984--94649-------------------------------99999-71552200529999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC
Q ss_conf 99997599999999999999999945996799999999998799877400999999999469958999999999867998
Q 005580 375 YEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (690)
Q Consensus 375 f~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (690)
|++..... ..+...+..+...+.+.|++++|...+++..+.. +-+...|..+...+...|+.++|.+.++..... .+
T Consensus 226 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~ 302 (388)
T d1w3ba_ 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CP 302 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC-CC
T ss_conf 99857775-5479999999999998789999999999999849-998999999999999748799999999865404-87
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999999999999829947999999999973
Q 005580 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+...+..+...+...|++++|...|++..+.
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 30010157999999878999999999999986
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.9e-07 Score=58.63 Aligned_cols=241 Identities=9% Similarity=-0.037 Sum_probs=148.9
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 87531395417689999874289888789885999999999999159988999999999992999899999999999981
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (690)
...+.++.++|.+.|+...+.. | -+...|..+-..+...|+++.|+..|.+..... +-+...+..+...+.
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~--P-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 98 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD--P-----KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 98 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCCCC-
T ss_conf 9998599999999999999868--9-----989999999999998377588999998510022-222222222222222-
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 44587666888955668767532024500001468988631002012553111112247883559999999997399887
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd 318 (690)
..|+.++|...+. +.... .|+
T Consensus 99 ---------~~~~~~~A~~~~~------------------------------------------------~~~~~--~~~ 119 (323)
T d1fcha_ 99 ---------NESLQRQACEILR------------------------------------------------DWLRY--TPA 119 (323)
T ss_dssp ---------HTTCHHHHHHHHH------------------------------------------------HHHHT--STT
T ss_pred ---------CCCCCCCCCCCHH------------------------------------------------HHHHH--CCC
T ss_conf ---------2221121110002------------------------------------------------67773--610
Q ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q ss_conf 3210025665011223589951221037887856328999988981068899999999997599-999999999999999
Q 005580 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMA 397 (690)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g-~~pd~~tyn~Li~~~ 397 (690)
...... ........ .+...... .+..+.+.+...+|.+.|.+..... -.++...+..+...+
T Consensus 120 ~~~~~~-~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 120 YAHLVT-PAEEGAGG---------------AGLGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp TGGGCC-------------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHH---------------CCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 678887-66400000---------------00100001-47888876579999999999999713012221110368888
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 94599679999999999879987740099999999946995899999999986799899999999999999829947999
Q 005580 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (690)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (690)
...|+.++|...++...... +-+...|..+-..+.+.|+.++|.+.|+...+.. +-+...|..+-..|.+.|+.++|.
T Consensus 183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH-HCCHHHHHHHHHHHHHCCCHHHHH
T ss_conf 88887755002111222222-2221110133301221111013788877899884-324999999999999878999999
Q ss_pred HHHHHHHHC
Q ss_conf 999999973
Q 005580 478 YLLHKLRTS 486 (690)
Q Consensus 478 ~ll~~M~~~ 486 (690)
..|.+-.+.
T Consensus 261 ~~~~~al~l 269 (323)
T d1fcha_ 261 EHFLEALNM 269 (323)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999970
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=1.4e-05 Score=49.03 Aligned_cols=216 Identities=9% Similarity=-0.043 Sum_probs=131.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf 99915998899999999999299989999999999998144587666888955668767532024500001468988631
Q 005580 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (690)
Q Consensus 200 ~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~ 279 (690)
.+.+.|++++|+..|+++.+.. +-+...|..+-..+. ..|+.++|...
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~----------~~~~~~~A~~~--------------------- 75 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISA--------------------- 75 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHH---------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----------HCCCHHHHHHH---------------------
T ss_conf 9998599999999999999868-998999999999999----------83775889999---------------------
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHH
Q ss_conf 00201255311111224788355999999999739988732100256650112235899512210378878563289999
Q 005580 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (690)
Q Consensus 280 tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li 359 (690)
|.+..+. .|+. ...+.. +.
T Consensus 76 ---------------------------~~~al~~--~p~~-------------------------------~~~~~~-la 94 (323)
T d1fcha_ 76 ---------------------------LRRCLEL--KPDN-------------------------------QTALMA-LA 94 (323)
T ss_dssp ---------------------------HHHHHHH--CTTC-------------------------------HHHHHH-HH
T ss_pred ---------------------------HHHHHCC--CCCC-------------------------------CCCCCC-CC
T ss_conf ---------------------------9851002--2222-------------------------------222222-22
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCC--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCCCCH
Q ss_conf 8898106889999999999759999--------------999999999999994599679999999999879-9877400
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVP--------------MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRS 424 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~--------------pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~t 424 (690)
..|...|+.++|.+.+++....... .+.......+..+...+...+|...+....... -.++...
T Consensus 95 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~ 174 (323)
T d1fcha_ 95 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV 174 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred CCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 22222221121110002677736106788876640000000100001478888765799999999999997130122211
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-HHHH-HHHHHHH
Q ss_conf 9999999994699589999999998679989999999999999982994799999999997379999-4499-9999997
Q 005580 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTA-DVIAKWF 502 (690)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~-p~t~-~~I~~~~ 502 (690)
+..+-..+...|+.++|...++...... +-+...|..+-..+...|+.++|...|++.... .+. +..+ ..-..+.
T Consensus 175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 251 (323)
T d1fcha_ 175 QCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCI 251 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHH
T ss_conf 1036888888887755002111222222-222111013330122111101378887789988--4324999999999999
Q ss_pred CCHHHHHHH
Q ss_conf 064988710
Q 005580 503 NSKEAARLG 511 (690)
Q Consensus 503 ~~~~~~~a~ 511 (690)
..+...+|.
T Consensus 252 ~~g~~~~A~ 260 (323)
T d1fcha_ 252 NLGAHREAV 260 (323)
T ss_dssp HHTCHHHHH
T ss_pred HCCCHHHHH
T ss_conf 878999999
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.32 E-value=7.7e-05 Score=44.43 Aligned_cols=127 Identities=12% Similarity=0.070 Sum_probs=79.1
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99889810688999999999975999999999999999-99945996799999999998799877400999999999469
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (690)
Q Consensus 358 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~-~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (690)
.+....+.+..++|.++|+.....+.... ..|..... -+...|+.+.|..+|+.+... ..-+...|...+..+.+.|
T Consensus 140 ~~~~~~~~~~~~~ar~i~~~al~~~~~~~-~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g 217 (308)
T d2onda1 140 YMKFARRAEGIKSGRMIFKKAREDARTRH-HVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTSTTCCT-HHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCC
T ss_conf 99999982786889999999998088867-999999999987655778999999999986-1003889999999999869
Q ss_pred CHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 9589999999998679-9899--999999999999829947999999999973
Q 005580 437 DVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~g-v~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+.|..+|++..... ..|+ ...|...+..-...|+.+.+..+.+++...
T Consensus 218 ~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 86899999999998278986899999999999999849999999999999987
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.15 E-value=0.00018 Score=42.20 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=86.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHH-HHHHCC
Q ss_conf 9988981068899999999997599999999999999999945996799999999998799877400999999-999469
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNNG 436 (690)
Q Consensus 358 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-~~~~~g 436 (690)
....+-+.|..+.|..+|+.+...........|...+..+.+.|+.+.|..+|..+...+- .+...|..... -+...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHCC
T ss_conf 9999986133899999999999871578699999999999982786889999999998088-867999999999987655
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 95899999999986799899999999999999829947999999999973
Q 005580 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.+.|..+|+.+... ..-+...|...++.+...|+.++|..+|++-...
T Consensus 184 ~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 184 DKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 778999999999986-1003889999999999869868999999999982
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=0.0015 Score=36.53 Aligned_cols=276 Identities=9% Similarity=-0.028 Sum_probs=153.2
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCCCH----HHHHHHH
Q ss_conf 875313954176899998742898887898859999999999991599889999999999929-99899----9999999
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQ----YHYNVLL 233 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~G-i~pd~----~tyn~LL 233 (690)
.....++.++|.++++.-.+.. |+.........++.+-..+...|++++|+..|.+..... -.++. ..+..+.
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 9998889999999999998548--68996799999999999999879999999999999999875011489999998887
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCC----CCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9998144587666888955668767532024500001468988----631002012553111112247883559999999
Q 005580 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (690)
Q Consensus 234 ~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~----d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~e 309 (690)
..+. ..|+...+...+... .++....... ....+..+-.. +...|+++.+...+..
T Consensus 99 ~~~~----------~~~~~~~a~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~a~~~~~~ 158 (366)
T d1hz4a_ 99 EILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARS 158 (366)
T ss_dssp HHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHH------HHHHCCHHHHHHHHHH
T ss_conf 8878----------888899999889999----9986750341256788899888789------9981456666899999
Q ss_pred HHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCC
Q ss_conf 997399887321002566501122358995122103788785632899998898106889999999999759----9999
Q 005580 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM 385 (690)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~----g~~p 385 (690)
............. ...+.. +...+...+....+...+.+.... +..+
T Consensus 159 ~~~~~~~~~~~~~----------------------------~~~~~~-~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 209 (366)
T d1hz4a_ 159 GIEVLSSYQPQQQ----------------------------LQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYHS 209 (366)
T ss_dssp HHHHTTTSCGGGG----------------------------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHH----------------------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 8887663002468----------------------------999988-88888764667888899999999998731157
Q ss_pred --CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH----CCCCCC
Q ss_conf --9999999999999459967999999999987998---7740099999999946995899999999986----799899
Q 005580 386 --NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN---PRLRSYGPALSVFCNNGDVDKACSVEEHMLE----HGVYPE 456 (690)
Q Consensus 386 --d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~---Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~----~gv~pd 456 (690)
....+..+...+...|+.+.|...+......... .....+..+-..+...|+.++|...++.... .+..|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 289 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 26999999999999860448989999999997622466677788999999998758799999999999988764266747
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf -99999999999982994799999999997
Q 005580 457 -EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 457 -~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
...+..+-..+...|+.++|...+++-..
T Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 999999999999987899999999999999
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.22 E-value=0.0045 Score=33.48 Aligned_cols=54 Identities=7% Similarity=0.042 Sum_probs=23.9
Q ss_pred HHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHC
Q ss_conf 7531395417689999874289888789885999999999999159-988999999999992
Q 005580 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQRE 220 (690)
Q Consensus 160 ~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G-~~~~A~~lf~~M~~~ 220 (690)
+.+..+.++|+++++...+.. |+ +...|+..-..+...| +.++|+..++.....
T Consensus 53 ~~~~e~~~~Al~~~~~ai~ln--P~-----~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~ 107 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIELN--AA-----NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE 107 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CC-----CHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 995886699999999999879--88-----76999999999998376799999999999988
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.007 Score=32.33 Aligned_cols=57 Identities=7% Similarity=-0.080 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHCCCCCCCCCCCC-CHHHHHHHHH
Q ss_conf 99999999999159988999999999992999899-999999999981445876668889-5566876753
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFE 260 (690)
Q Consensus 192 ~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~-~tyn~LL~a~~~~~~~~~~~~k~g-~~~~A~~i~~ 260 (690)
..|+.+=..+.+.+..++|+++++++... .|+. ..|+..-..+. ..+ +.++|...+.
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~----------~l~~~~~eal~~~~ 102 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----------SLQKDLHEEMNYIT 102 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH----------HHCCCHHHHHHHHH
T ss_conf 99999999999588669999999999987--9887699999999999----------83767999999999
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.46 E-value=0.018 Score=29.75 Aligned_cols=119 Identities=12% Similarity=0.048 Sum_probs=57.5
Q ss_pred HCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC------CHHHHHHHHH
Q ss_conf 10688999999999975----99999-9999999999999459967999999999987998774------0099999999
Q 005580 364 KKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL------RSYGPALSVF 432 (690)
Q Consensus 364 k~g~~~~A~~lf~~M~~----~g~~p-d~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~------~ty~~lI~~~ 432 (690)
..|++++|.+.|++... .+-.+ -..++..+...+...|++++|...+++.......... ..|..++..+
T Consensus 130 ~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (290)
T d1qqea_ 130 DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQ 209 (290)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78789999889999999987337603334688999999998173999999999999868133245556999999999999
Q ss_pred HHCCCHHHHHHHHHHHHHCCCC-C---CHHHHHHHHHHHHH--CCCHHHHHHHHHH
Q ss_conf 9469958999999999867998-9---99999999999998--2994799999999
Q 005580 433 CNNGDVDKACSVEEHMLEHGVY-P---EEPELEALLRVSVE--AGKGDRVYYLLHK 482 (690)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~-p---d~~ty~~Li~~~~~--~g~~~~A~~ll~~ 482 (690)
...|+.+.|...++........ + .......++.++-. .+.+++|..-|+.
T Consensus 210 l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_conf 98465999999999999759774443999999999999983689999999999988
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.018 Score=29.71 Aligned_cols=239 Identities=14% Similarity=-0.012 Sum_probs=147.9
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 9999915998899999999999299989----999999999998144587666888955668767532024500001468
Q 005580 198 LDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (690)
Q Consensus 198 I~~~~k~G~~~~A~~lf~~M~~~Gi~pd----~~tyn~LL~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~ 273 (690)
-..+...|++++|+.+|++.....-..+ ...+..+-..+. ..|+.++|...+... .++....
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~----------~~g~~~~A~~~~~~a----~~~~~~~ 84 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQH 84 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----HHHHHHH
T ss_conf 99999888999999999999854868996799999999999999----------879999999999999----9998750
Q ss_pred CCC--CCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC---CCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCC
Q ss_conf 988--63100201255311111224788355999999999739---9887321002566501122358995122103788
Q 005580 274 DMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (690)
Q Consensus 274 g~~--d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (690)
+.. ....+..+... +...|++..+...+.+..... ..+..
T Consensus 85 ~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~al~~~~~~~~~~~----------------------------- 129 (366)
T d1hz4a_ 85 DVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQL----------------------------- 129 (366)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTS-----------------------------
T ss_pred CCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHCCCCHH-----------------------------
T ss_conf 1148999999888788------78888899999889999998675034125-----------------------------
Q ss_pred CCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC----CCCC
Q ss_conf 785632899998898106889999999999759----99999999999999999459967999999999987----9987
Q 005580 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP 420 (690)
Q Consensus 349 pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~----g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~----g~~P 420 (690)
+........+-..+...|+++.+...+...... +.......+..+...+...++...+...+.+.... +..+
T Consensus 130 ~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 209 (366)
T d1hz4a_ 130 PMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 209 (366)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 67888998887899981456666899999888766300246899998888888764667888899999999998731157
Q ss_pred C--CCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 7--400999999999469958999999999867998---9999999999999982994799999999997
Q 005580 421 R--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY---PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 421 d--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~---pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
. ...+..+...+...|+.+.|...++........ .....+..+-..+...|+.++|...++....
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_conf 2699999999999986044898999999999762246667778899999999875879999999999998
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.42 E-value=0.019 Score=29.58 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=64.8
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC-CCHHHHHHHHHHHCCC
Q ss_conf 988981068899999999997599999999999999999945996799999999998799877-4009999999994699
Q 005580 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (690)
Q Consensus 359 i~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~ 437 (690)
=..|.+.|++++|...|++..... +-+...|+.+-.+|.+.|++++|...|+..... .|+ ..+|..+-.++...|+
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCC
T ss_conf 999998699999999999999859-998999981789874100000124788888871--88738999999999998799
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999986
Q 005580 438 VDKACSVEEHMLE 450 (690)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (690)
.++|...|+....
T Consensus 88 ~~~A~~~~~~al~ 100 (201)
T d2c2la1 88 YDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.39 E-value=0.02 Score=29.49 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=88.4
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 89810688999999999975999999999999999999459967999999999987998774009999999994699589
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (690)
.+...|+++.|.+.|.++ ..|+..+|..+-..+...|+.++|.+.|++..+.. +-+...|..+-.++.+.|+.++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHC----CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHH
T ss_conf 999877999999999864----89889999999999998589146787899999985-5234667889999985424999
Q ss_pred HHHHHHHHHHC------------CCC--CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHH
Q ss_conf 99999999867------------998--99-9999999999998299479999999999737999944
Q 005580 441 ACSVEEHMLEH------------GVY--PE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (690)
Q Consensus 441 A~~l~~~M~~~------------gv~--pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~~~~p~ 493 (690)
|...|+..... |.. ++ ..++..+-..+.+.|++++|...|...... .+.+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~~ 154 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEPR 154 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSGG
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCCCC
T ss_conf 9999999998672673678998665436305889999999999978999999999999836--99804
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.024 Score=29.00 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=56.2
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 88981068899999999997599999999999999999945996799999999998799877400999999999469958
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (690)
..|.+.|++++|...|++..... +-+...|..+-..|...|++++|...|+...+.. +-+...|..+..++...|+.+
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999589999999866021100-0113332456788874054212888899999875-446687799999999949999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999867
Q 005580 440 KACSVEEHMLEH 451 (690)
Q Consensus 440 ~A~~l~~~M~~~ 451 (690)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999989999872
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.18 E-value=0.026 Score=28.77 Aligned_cols=98 Identities=12% Similarity=-0.053 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q ss_conf 99999999999999459967999999999987998774009999999994699589999999998679989-99999999
Q 005580 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEAL 463 (690)
Q Consensus 385 pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~L 463 (690)
|+...+.-.=..+.+.|++++|...|....... +-+...|..+-.+|.+.|+.++|...|+..... .| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_conf 649999999999998699999999999999859-998999981789874100000124788888871--88738999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999982994799999999997
Q 005580 464 LRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~ 485 (690)
-.++...|++++|...|++...
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
T ss_conf 9999987999999999999987
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.031 Score=28.34 Aligned_cols=100 Identities=7% Similarity=-0.041 Sum_probs=51.2
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHHCCCCCCC-CHHHHHHHHHH
Q ss_conf 9988981068899999999997599999999999999999945996---7999999999987998774-00999999999
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG---DMAFDMVKRMKSLGINPRL-RSYGPALSVFC 433 (690)
Q Consensus 358 li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~---~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~ 433 (690)
+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.++. ++|..+++......-.|+. .+|..+-.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9887369999999999999988329-998999999999999851267899999999999860699319999999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 469958999999999867998999999
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPEL 460 (690)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (690)
+.|+.++|.+.|+...+. .|+....
T Consensus 84 ~~g~~~~A~~~~~~aL~~--~P~~~~A 108 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQT--EPQNNQA 108 (122)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHH--CCCCHHH
T ss_conf 973169999999999976--9098999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=95.71 E-value=0.02 Score=29.52 Aligned_cols=115 Identities=14% Similarity=0.089 Sum_probs=77.5
Q ss_pred HHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHH
Q ss_conf 81068899999999997599999999999999999945996799999999998799877400999999999469958999
Q 005580 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (690)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (690)
.+.|++++|...+++-.+.. +-|...+..+...+|..|++++|...++...+. .|+.......+.... .+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll------~a~ 77 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV------KAA 77 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH------HHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHH------HHC
T ss_conf 88889999999999999978-999999999999999879999999999999986--997389999999999------834
Q ss_pred HHHHHHHHC----CC--CC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 999999867----99--89-9999999999999829947999999999973
Q 005580 443 SVEEHMLEH----GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 443 ~l~~~M~~~----gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
...+++... .+ .| +...+......+...|+.++|..++.+..+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 663789987544420358647999999999999679989999999999833
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.49 E-value=0.05 Score=27.00 Aligned_cols=87 Identities=11% Similarity=0.094 Sum_probs=57.0
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHH
Q ss_conf 88981068899999999997599999999999999999945996799999999998799877400999999999469958
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (690)
..+.+.|++++|...|++...... -+...|..+-..+.+.|++++|...++...+.. +-+...|..+-..+...|+.+
T Consensus 24 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~ 101 (112)
T d1hxia_ 24 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN 101 (112)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCCHH
T ss_conf 999987605899998861011211-110012335456410125877410000011111-100000378999999978999
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q 005580 440 KACSVEEHM 448 (690)
Q Consensus 440 ~A~~l~~~M 448 (690)
+|.+.+++.
T Consensus 102 ~A~~~l~~~ 110 (112)
T d1hxia_ 102 AALASLRAW 110 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
T ss_conf 999999998
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.48 E-value=0.051 Score=26.98 Aligned_cols=90 Identities=10% Similarity=-0.041 Sum_probs=68.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHH
Q ss_conf 99994599679999999999879987740099999999946995899999999986799899999999999999829947
Q 005580 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (690)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (690)
..|.+.|++++|...|.+..+.. +-+...|..+-..+...|+.++|...|+...+.. +-+...|..+..++...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHH
T ss_conf 99999589999999866021100-0113332456788874054212888899999875-446687799999999949999
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999973
Q 005580 475 RVYYLLHKLRTS 486 (690)
Q Consensus 475 ~A~~ll~~M~~~ 486 (690)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
T ss_conf 999989999872
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.47 E-value=0.052 Score=26.95 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=46.8
Q ss_pred HHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHH
Q ss_conf 89810688999999999975999999999999999999459967999999999987998774009999999994699589
Q 005580 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (690)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (690)
.+.+.|++++|..+|++..... +-+...|..+-.++.+.|++++|...+....... +.+...|..+-.++...|+.++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCHHH
T ss_conf 9999699999999999988619-9601343000110110000112100134677740-2202677889999998127999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999986
Q 005580 441 ACSVEEHMLE 450 (690)
Q Consensus 441 A~~l~~~M~~ 450 (690)
|...|+....
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.056 Score=26.73 Aligned_cols=95 Identities=15% Similarity=0.023 Sum_probs=66.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCC---CHHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q ss_conf 9999999945996799999999998799877400999999999469---958999999999867998999-999999999
Q 005580 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---DVDKACSVEEHMLEHGVYPEE-PELEALLRV 466 (690)
Q Consensus 391 n~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g---~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~ 466 (690)
..|++.+...+++++|.+.|+.....+ +.+..++..+-.++.+.+ +.++|..++++.......|+. ..|..|-.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 779887369999999999999988329-9989999999999998512678999999999998606993199999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHC
Q ss_conf 99829947999999999973
Q 005580 467 SVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (690)
|.+.|++++|...|++....
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99973169999999999976
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.95 E-value=0.074 Score=25.98 Aligned_cols=91 Identities=13% Similarity=0.037 Sum_probs=70.5
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCH
Q ss_conf 99999459967999999999987998774009999999994699589999999998679989999999999999982994
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (690)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (690)
-..+.+.|++++|..+|.+..+.. +-+...|..+-.++.+.|+.++|...+....... +.+...|..+-..+...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCC-CCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHHHHHHHCCCH
T ss_conf 999999699999999999988619-9601343000110110000112100134677740-22026778899999981279
Q ss_pred HHHHHHHHHHHHC
Q ss_conf 7999999999973
Q 005580 474 DRVYYLLHKLRTS 486 (690)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (690)
++|...|++....
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999984
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.075 Score=25.93 Aligned_cols=198 Identities=10% Similarity=-0.079 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999999999159988999999999992999899999999999981445876668889556687675320245000014
Q 005580 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (690)
Q Consensus 192 ~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~ 271 (690)
..|..+=..+-+.|+.++|+..|++..... +-+..+|+.+=.++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~---------------------------------- 82 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT---------------------------------- 82 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCHHHHHHHCHHHH----------------------------------
T ss_conf 999999999998799999999999854349-998899960042788----------------------------------
Q ss_pred CCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCH
Q ss_conf 68988631002012553111112247883559999999997399887321002566501122358995122103788785
Q 005580 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (690)
Q Consensus 272 ~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (690)
..|++++|...|++..... |+. .
T Consensus 83 ------------------------~~g~~~~A~~~~~~al~~~--p~~-------------------------------~ 105 (259)
T d1xnfa_ 83 ------------------------QAGNFDAAYEAFDSVLELD--PTY-------------------------------N 105 (259)
T ss_dssp ------------------------HTTCHHHHHHHHHHHHHHC--TTC-------------------------------T
T ss_pred ------------------------HHHHHHHHHHHHHHHHHHH--HHH-------------------------------H
T ss_conf ------------------------8777887523446899987--611-------------------------------1
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Q ss_conf 63289999889810688999999999975999999999999999999459967999999999987998774009999999
Q 005580 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (690)
Q Consensus 352 ~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (690)
..+.. +-..|...|+.++|.+.|+...... +.+......+..++.+.+..+.+..+........ +....++ ++..
T Consensus 106 ~a~~~-lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~ 180 (259)
T d1xnfa_ 106 YAHLN-RGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEF 180 (259)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHH-HHHH
T ss_conf 15888-9999998766799999999998653-0007888999999988535878999998764031--4443455-7788
Q ss_pred HHHCCCHHHHHHHHHHHHHC--CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99469958999999999867--9989-9999999999999829947999999999973
Q 005580 432 FCNNGDVDKACSVEEHMLEH--GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~--gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+...........-....... ...| ...+|..+-..+...|+.++|...|+.-...
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 8888777778999999999866408450999999999999878999999999999983
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.64 E-value=0.088 Score=25.49 Aligned_cols=129 Identities=7% Similarity=-0.069 Sum_probs=74.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHH----CCCCC-CCCHHH
Q ss_conf 99889810688999999999975----99-9999999999999999-45996799999999998----79987-740099
Q 005580 358 RLSEDAKKYAFQRGFEIYEKMCL----DE-VPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKS----LGINP-RLRSYG 426 (690)
Q Consensus 358 li~~~~k~g~~~~A~~lf~~M~~----~g-~~pd~~tyn~Li~~~~-~~g~~~~A~~l~~~M~~----~g~~P-d~~ty~ 426 (690)
+-..|.+.|++++|.+.+++... .| ......++..+...|- ..|++++|...+..... .+-.+ -..+|.
T Consensus 83 ~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~ 162 (290)
T d1qqea_ 83 AYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFI 162 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 99999980885888999997667765325320589999998886764787899998899999999873376033346889
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 99999994699589999999998679989-----99-99999999999829947999999999973
Q 005580 427 PALSVFCNNGDVDKACSVEEHMLEHGVYP-----EE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-----d~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+...+...|+.++|...|++........ .. ..|..+...+...++.+.|...+++....
T Consensus 163 ~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 999999981739999999999998681332455569999999999999846599999999999975
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.1 Score=25.14 Aligned_cols=27 Identities=7% Similarity=-0.100 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 999999999915998899999999999
Q 005580 193 QLRVELDMCSKRGDVMGAIRLYDKAQR 219 (690)
Q Consensus 193 tyn~lI~~~~k~G~~~~A~~lf~~M~~ 219 (690)
+|..+=.++.+.|+++.|++.|++..+
T Consensus 38 ~~~nlG~~~~~~g~~~~A~~~~~kAl~ 64 (192)
T d1hh8a_ 38 ICFNIGCMYTILKNMTEAEKAFTRSIN 64 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 999999999985891467878999999
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=94.10 E-value=0.12 Score=24.76 Aligned_cols=87 Identities=11% Similarity=-0.021 Sum_probs=58.4
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCCC-CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 999994599679999999999879987-7400999999999469958999999999867998999999999999998299
Q 005580 394 GRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (690)
Q Consensus 394 i~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (690)
-..+.+.|++++|...|++..... | +...|..+-..+.+.|+.++|...++...+.. +-+...|..+-..|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCC--CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHCCC
T ss_conf 999998760589999886101121--1110012335456410125877410000011111-1000003789999999789
Q ss_pred HHHHHHHHHHH
Q ss_conf 47999999999
Q 005580 473 GDRVYYLLHKL 483 (690)
Q Consensus 473 ~~~A~~ll~~M 483 (690)
.++|.+.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999998
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.73 E-value=0.14 Score=24.33 Aligned_cols=203 Identities=6% Similarity=-0.059 Sum_probs=106.6
Q ss_pred HHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q ss_conf 87531395417689999874289888789885999999999999159988999999999992999899999999999981
Q 005580 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (690)
Q Consensus 159 ~~~~~~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~lI~~~~k~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL~a~~~ 238 (690)
.+.+.+....|..+|..+ .-|..++..+.+.++...|.+++... -+..+|.-+..+|..
T Consensus 23 ~c~~~~lye~A~~lY~~~---------------~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVD 81 (336)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHC---------------CCHHHHHHHHHHHCCHHHHHHHHHHC------CCHHHHHHHHHHHHH
T ss_conf 998787799999999867---------------89999999997031599999999880------889999999999972
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCC
Q ss_conf 44587666888955668767532024500001468988631002012553111112247883559999999997399887
Q 005580 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (690)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li~~~~~~~~~~~~g~~~~A~~l~~eM~~~g~~Pd 318 (690)
.....-+ .+.. .....
T Consensus 82 ----------~~e~~la-~i~~------------------------------------~~~~~----------------- 97 (336)
T d1b89a_ 82 ----------GKEFRLA-QMCG------------------------------------LHIVV----------------- 97 (336)
T ss_dssp ----------TTCHHHH-HHTT------------------------------------TTTTT-----------------
T ss_pred ----------CCHHHHH-HHHH------------------------------------HHHHC-----------------
T ss_conf ----------7287899-9999------------------------------------87535-----------------
Q ss_pred CCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 32100256650112235899512210378878563289999889810688999999999975999999999999999999
Q 005580 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (690)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~ 398 (690)
+...... ++..|-..|..++...+++..... -..+...++-++..|+
T Consensus 98 -------------------------------~~d~l~~-~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 98 -------------------------------HADELEE-LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 144 (336)
T ss_dssp -------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred -------------------------------CHHHHHH-HHHHHHHCCCHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
T ss_conf -------------------------------7887899-999998769859999999999757-7444679999999999
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHHC
Q ss_conf 45996799999999998799877400999999999469958999999999867--------9989999999999999982
Q 005580 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH--------GVYPEEPELEALLRVSVEA 470 (690)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~--------gv~pd~~ty~~Li~~~~~~ 470 (690)
+.+. + ++.+.++... +.....-++..|-+.+.++++.-++..|... .-.++.......+..+.+.
T Consensus 145 k~~~-~---kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~ 217 (336)
T d1b89a_ 145 KFKP-Q---KMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKV 217 (336)
T ss_dssp TTCH-H---HHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHC
T ss_pred HHCH-H---HHHHHHHHCC---CCCCHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHCC
T ss_conf 8694-9---9999998602---3599999999988748749999999855879999999997654456699999999724
Q ss_pred CCHHHHHHHHHHHHHC
Q ss_conf 9947999999999973
Q 005580 471 GKGDRVYYLLHKLRTS 486 (690)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (690)
.+.+...+++....+.
T Consensus 218 ~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 218 ANVELYYRAIQFYLEF 233 (336)
T ss_dssp SSTHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHC
T ss_conf 7869999999999975
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.62 E-value=0.14 Score=24.21 Aligned_cols=58 Identities=9% Similarity=0.071 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 99999999945996799999999998799877400999999999469958999999999
Q 005580 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (690)
Q Consensus 390 yn~Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (690)
+..+...+.+.|++++|...++.+.... .-+...|..++.++.+.|+..+|.+.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 9999999988799057899999999849-851999999999999855799999999999
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=92.06 E-value=0.15 Score=24.12 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=24.6
Q ss_pred HCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 46995899999999986799899999999999999829947999999999973
Q 005580 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
+.|++++|...+++..+.. +-|...+..+...++..|++++|...|+.....
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 8889999999999999978-999999999999999879999999999999986
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.24 Score=22.84 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=54.3
Q ss_pred HHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-CCC-----CCHHHHHHHHHH
Q ss_conf 88981068899999999997599999999999999999945996799999999998799-877-----400999999999
Q 005580 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR-----LRSYGPALSVFC 433 (690)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~Li~~~~~~g~~~~A~~l~~~M~~~g~-~Pd-----~~ty~~lI~~~~ 433 (690)
..+.+.|++++|.+.|++..... +.+...|..+-.+|.+.|++++|...++.+....- .+. ..+|..+-..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99998599999999999998849-64589998688999881860778999999998680127889889999999999999
Q ss_pred HCCCHHHHHHHHHHHHH
Q ss_conf 46995899999999986
Q 005580 434 NNGDVDKACSVEEHMLE 450 (690)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (690)
..+++++|.+.|+.-..
T Consensus 91 ~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHCCHHHHHHHHHHHHH
T ss_conf 93889999999999984
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.27 E-value=0.29 Score=22.34 Aligned_cols=100 Identities=17% Similarity=0.180 Sum_probs=66.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CCC--C-HHHHHHHHHH
Q ss_conf 999999459967999999999987998774009999999994699589999999998679---989--9-9999999999
Q 005580 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---VYP--E-EPELEALLRV 466 (690)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g---v~p--d-~~ty~~Li~~ 466 (690)
+=..+.+.|++++|...|.+..... +.+...|..+-.+|.+.|+.++|...++++.+.. ..+ . ..+|..+-..
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999998599999999999998849-645899986889998818607789999999986801278898899999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHCCCCCCHHHH
Q ss_conf 99829947999999999973799994499
Q 005580 467 SVEAGKGDRVYYLLHKLRTSVRKVSPSTA 495 (690)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~~~~~~p~t~ 495 (690)
+...+++++|...|.+-... ...++..
T Consensus 89 ~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHC--CCCHHHH
T ss_conf 99938899999999999845--9999999
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=90.26 E-value=0.35 Score=21.77 Aligned_cols=63 Identities=16% Similarity=-0.003 Sum_probs=39.4
Q ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 0099999999946995899999999986799899999999999999829947999999999973
Q 005580 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.+|+.+-.+|.+.|+.++|.+.++...+.. +.+...|..+-.++...|++++|...|......
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHCCCCCC-CHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 999619999998465301110100010000-000124677689999968999999999999982
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.72 E-value=0.39 Score=21.50 Aligned_cols=252 Identities=8% Similarity=-0.094 Sum_probs=119.5
Q ss_pred CCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHH---HHHHHHH-------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 395417689999874289888789885999999---9999991-------599889999999999929998999999999
Q 005580 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV---ELDMCSK-------RGDVMGAIRLYDKAQREGIKLGQYHYNVLL 233 (690)
Q Consensus 164 ~~~~~A~~v~~~m~~~g~~~~~~~~p~~~tyn~---lI~~~~k-------~G~~~~A~~lf~~M~~~Gi~pd~~tyn~LL 233 (690)
...+.|.++++...+.. |+. ...|+. ++..+.. .|+++.|+.+++...... +-+...+..+-
T Consensus 43 ~~~~~al~~~~~~l~~~--P~~-----~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~ 114 (334)
T d1dcea1 43 ELDESVLELTSQILGAN--PDF-----ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRC 114 (334)
T ss_dssp CCSHHHHHHHHHHHHHC--TTC-----HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHC--CCC-----HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_conf 56699999999999988--785-----89999999999997650034778778999999999999868-88679898864
Q ss_pred HHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9998144587666888955668767532024500001468988631002012-553111112247883559999999997
Q 005580 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGS-SPMIDKLESNSSYRFDDLDSTFNEKEN 312 (690)
Q Consensus 234 ~a~~~~~~~~~~~~k~g~~~~A~~i~~~~~~~s~em~~~~g~~d~~tyn~li-~~~~~~~~~~~~g~~~~A~~l~~eM~~ 312 (690)
.++... ..++.+++...+. +.... .-.+...|...+ .. +-..+..++|...++....
T Consensus 115 ~~~~~~--------~~~~~~~a~~~~~-------~al~~-~~~~~~~~~~~~~~~------~~~~~~~~~Al~~~~~~i~ 172 (334)
T d1dcea1 115 WLLSRL--------PEPNWARELELCA-------RFLEA-DERNFHCWDYRRFVA------AQAAVAPAEELAFTDSLIT 172 (334)
T ss_dssp HHHHTC--------SSCCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHHH------HHTCCCHHHHHHHHHTTTT
T ss_pred HHHHHH--------CCCCHHHHHHHHH-------HHHHH-CCHHHHHHHHHHHHH------HHHCCCCHHHHHHHHHHHH
T ss_conf 899884--------3042899999999-------99855-921211110578999------8744552899999999887
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 39988732100256650112235899512210378878563289999889810688999999999975999999999999
Q 005580 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (690)
Q Consensus 313 ~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t~n~~li~~~~k~g~~~~A~~lf~~M~~~g~~pd~~tyn~ 392 (690)
.. |+ +...|+. +-..+.+.|+.++|...+...... .|+ ...
T Consensus 173 ~~--p~-------------------------------~~~a~~~-l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~ 213 (334)
T d1dcea1 173 RN--FS-------------------------------NYSSWHY-RSCLLPQLHPQPDSGPQGRLPENV--LLK---ELE 213 (334)
T ss_dssp TT--CC-------------------------------CHHHHHH-HHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHH
T ss_pred CC--CC-------------------------------CHHHHHH-HHHHHHHHCCHHHHHHHHHHHHHH--HHH---HHH
T ss_conf 18--98-------------------------------7999999-999999826889899988776776--899---999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCC
Q ss_conf 99999945996799999999998799877400999999999469958999999999867998999999999999998299
Q 005580 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (690)
Q Consensus 393 Li~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (690)
+...+...+..+++...+....... .++...+..+...+...++.++|...+.+..... +-+...|..+-..+...|+
T Consensus 214 ~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 291 (334)
T d1dcea1 214 LVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLY 291 (334)
T ss_dssp HHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGG
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHCCC
T ss_conf 9999988244148899999887718-6605678879999999866999999999887629-1379999999999987899
Q ss_pred HHHHHHHHHHHHHC
Q ss_conf 47999999999973
Q 005580 473 GDRVYYLLHKLRTS 486 (690)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (690)
.++|...+++....
T Consensus 292 ~~eA~~~~~~ai~l 305 (334)
T d1dcea1 292 EKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999987
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.43 Score=21.25 Aligned_cols=57 Identities=11% Similarity=-0.060 Sum_probs=20.6
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 9999994699589999999998679989999999999999982994799999999997
Q 005580 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (690)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (690)
+-.+|.+.|+.++|...++...... +-+...|..+-.++...|++++|...|++...
T Consensus 68 la~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 68 LAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999886421101100000001002-23103467779999872229999999999997
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.62 E-value=0.62 Score=20.28 Aligned_cols=62 Identities=13% Similarity=-0.128 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
Q ss_conf 099999999946995899999999986799899999999999999829947999999999973
Q 005580 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (690)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (690)
.|..+-.++.+.|+.++|...+....+.. +-+...|..+-.++...|++++|...|++..+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 99989999986402101366655443100-022367776999999804799999999999985
|