Citrus Sinensis ID: 005589

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
Protein Sequence
MDLDTDLFADESGPAVNHVRGRFQPKAKPRPRNERTASVDVIDKDSQLLDPVVSSVPASEVVRTVEHFKENESSENALHSEVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMPALIVSDYNGGEAVVFEGLSSDNNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVDDARLEREVQQDGAFPDLNFLDSTSEEAVASGQRAAKYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGSQFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQHEDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVDEPDNEARNDGSFSAEPPSNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDSASMIDEDLEELNPQYNRYICVFAG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHHcccccccccccccccEEEccccccccccccccccccHHHHccHcHcccccccccccccHHccEcccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEcccEEEEcccccccccccccEEccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHEEEEcc
Coil and Loop (DISEMBL)
mdldtdlfadesgpavnhvrgrfqpkakprprnertasvdvidkdsqlldpvvssvpaseVVRTVEHfkenessenalhsevtasdgcgDLLSSFQKAAGQNADVLSGLEslndfqsqssngtempaLIVSDYNGGEAVVFEglssdnnaapgvcdaaqaetsadmfltqdpiscgqaaltnnaggipvddarlerevqqdgafpdlnfldstSEEAVASGqraakykprpqvrtesekfnissvphpdavesvmhspnaqfvssgsqfmsegsipasvpedcfdyssidldgttppdptssefpvneeltnfaetsftdaaasgdmqhedfpattesqsamgketkASTVLSLSQRLIESSQAGKETEVGKLLRQLRkgvvvpelvdepdnearndgsfsaeppsnavdedegdvggnsaektsekkraprksketvsengktvrkrkkaneasdtdknppkkfshstrrKRRIVNKellqtpedeidpqkvpmkdLILLAEYKERLASkeakatgtplknqsaehssreedyhnedetfaseqdngsfgdpatdrvqprvhffnyqsfmkktptvrwskqETELFYEAIRQFGTDLSMIqqlfpgrtrqQVKLKYKkeerehplRLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDakeddsasmIDEDLEELNPQYNRYICVFAG
Flexible Loop (DISEMBL)
mdldtdlfadesgpavnhvrgrfqpkakprprnertasvdvidkdsqlldpvvssvpasevVRTVEHFkenessenalhsEVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMPALIVSDYNGGEAVVFEGLSSDNNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVDDARLEREVQQDGafpdlnfldSTSEEAVasgqraakykprpqvrtesekfnissVPHPDAVESVMHSPNAQFVSSGSQFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQHEDFPATTESQSAMGKETKASTVLSLSQRLiessqagketevgkllrqlrkgvvvpelvdepdnearndgsfsaeppsnavdedegdvggnsaektsekkraprksketvsengktvrkrkkaneasdtdknppkkfshstrrkrrivnkellqtpedeidpqkvpmKDLILLAEYKERLAskeakatgtplknqsaehssreeDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFnyqsfmkktptvrwSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKlkykkeerehplrlTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDSASMIDEDleelnpqynRYICVFAG
Low Complexity Region (SEG)
MDLDTDLFADESGPAVNHVRGRFQPKAKPRPRNERTASVDVIDKDSQLLDpvvssvpasevvRTVEHFKENESSENALHSEVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMPALIVSDYNGGEAVVFEGLSSDNNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVDDARLEREVQQDGAFPDLNFLDSTSEEAVASGQRAAKYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGSQFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQHEDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVDEPDNEARNDGSFSAEPPSNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEqlqqfaaqaaqdaKEDDSASMIDEDLEELNPQYNRYICVFAG
Disordered region (IsUnstruct)
******************************************************************************************************************************ALIVSDYNGGEAVVFEGL*********VC*********DMFLTQDPISCGQAALTNNAGGI************************************************************************************************************************************************************************************************GVV*******************************************************************************************************************LILLAE********************************************************PRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGR**********************************************************************QYNRYICVF**
Disordered Region (DISOPRED)
*DLDTDLFADE*********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************RVHFFNYQSFM**TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQV********************************************
Disordered Region (DISEMBL)
MDLDTDLFADESGPAVNHVRGRFQ*************SVDVIDKDSQLLDPVVSSVPASEVVRTVEHFKENESSENALHSEVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMPALIVSDYNGGEAVVFEGLSSDNNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVDDARLEREVQQDGAFPDLNFLDSTSE************************FNISSVPHPDAVESVMHSPNAQFVSSGSQFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQHED********************LSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVDEPD*******************************************************************************RKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASK***********************************NGSFGDPATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQ***************SMIDEDLEELNPQYNRYICVFAG
Disordered Region (DISPRO)
****TDLFADESG*A**************************************************************L**EVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQS***TEM**L****************************AAQAETSADMFLTQDPISCGQAALTNNAGGI***************************************************************************************************************************************************************************************************************************************************************************************************************QKVPMKDLILLAEYKER*AS******************SREEDYHNEDETFASEQDN*******TDRVQ*RVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDSASMIDEDLEELNPQYNRYICVFAG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLDTDLFADESGPAVNHVRGRFQPKAKPRPRNERTASVDVIDKDSQLLDPVVSSVPASEVVRTVEHFKENESSENALHSEVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMPALIVSDYNGGEAVVFEGLSSDNNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVDDARLEREVQQDGAFPDLNFLDSTSEEAVASGQRAAKYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGSQFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQHEDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVDEPDNEARNDGSFSAEPPSNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDSASMIDEDLEELNPQYNRYICVFAG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	689	2.2.26 [Sep-21-2011]
O94481	520	Transcription factor TFII	yes	no	0.079	0.105	0.490	3e-11
P46678	594	Transcription factor TFII	yes	no	0.174	0.202	0.290	3e-10
Q571C7	2467	Transcription factor TFII	yes	no	0.120	0.033	0.392	4e-10
A6H8Y1	2624	Transcription factor TFII	yes	no	0.120	0.031	0.392	7e-10

>sp|O94481|TFC5_SCHPO Transcription factor TFIIIB component B'' OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=bdp1 PE=3 SV=2

 Score = 71.2 bits (173), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 43/55 (78%)

Query: 578 RWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEAL 632
           +W+  +TE FY+A+ Q+GTD ++I  +FP R R+Q+KLK+K+EER +P R+ +AL
Sbjct: 380 KWNAMDTEKFYKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPARVNQAL 434

General activator of RNA polymerase III transcription.
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P46678|TFC5_YEAST Transcription factor TFIIIB component B'' OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=BDP1 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 69/124 (55%), Gaps = 4/124 (3%)

Query: 536 NEDETFASEQDNGSFGDPATDRV--QPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQ 593
           +E+        N S  +   ++V   P  + +NY S+ + + T  W+ +E   FY+A+  
Sbjct: 375 DEETMVVDRHKNASIENEYKEKVDENPFANLYNYGSYGRGSYTDPWTVEEMIKFYKALSM 434

Query: 594 FGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQFA 653
           +GTD ++I QL+P R+R+QVK K+  EE++ P+ +  AL  R+K   +F++   ++++  
Sbjct: 435 WGTDFNLISQLYPYRSRKQVKAKFVNEEKKRPILIELAL--RSKLPPNFDEYCCEIKKNI 492

Query: 654 AQAA 657
              A
Sbjct: 493 GTVA 496

General activator of RNA polymerase III transcription.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q571C7|BDP1_MOUSE Transcription factor TFIIIB component B'' homolog OS=Mus musculus GN=Bdp1 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
           Y SF K   +  WS +ET++F+ AI   GTD SMI QLFP R R ++K K+K+EE+ +  
Sbjct: 293 YSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGW 352

Query: 627 RLTEALT-NRAKDHSHFEQVIEQL 649
           R+ +A    R  D   F  +++++
Sbjct: 353 RIDKAFQEKRPFDFDFFAHLLQKV 376

General activator of RNA polymerase III transcription. Requires for transcription from all three types of polymerase III promoters. Requires for transcription of genes with internal promoter elements and with promoter elements upstream of the initiation site.

Mus musculus (taxid: 10090)

>sp|A6H8Y1|BDP1_HUMAN Transcription factor TFIIIB component B'' homolog OS=Homo sapiens GN=BDP1 PE=1 SV=3

 Score = 66.6 bits (161), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 1/84 (1%)

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
           Y SF K   +  WS +ET++F+ AI   GTD SMI QLFP R R ++K K+K+EE+ +  
Sbjct: 291 YSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGW 350

Query: 627 RLTEALT-NRAKDHSHFEQVIEQL 649
           R+ +A    R  D   F  +++++
Sbjct: 351 RIDKAFQEKRPFDFDFFAHLLQKV 374

General activator of RNA polymerase III transcription. Requires for transcription from all three types of polymerase III promoters. Requires for transcription of genes with internal promoter elements and with promoter elements upstream of the initiation site.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
297744422	992	unnamed protein product [Vitis vinifera]	0.959	0.666	0.443	1e-134
359475125	1053	PREDICTED: uncharacterized protein LOC10	0.957	0.626	0.428	1e-132
255543763	1003	conserved hypothetical protein [Ricinus	0.931	0.640	0.420	1e-127
224107393	1117	predicted protein [Populus trichocarpa]	0.535	0.330	0.450	6e-76
449484998	513	PREDICTED: uncharacterized protein LOC10	0.663	0.890	0.411	5e-72
449464320	512	PREDICTED: uncharacterized protein LOC10	0.663	0.892	0.411	5e-72
356495735	935	PREDICTED: uncharacterized protein LOC10	0.822	0.606	0.320	3e-65
357519631	837	Transcription factor tfiiib component [M	0.312	0.256	0.477	2e-49
297797894	600	DNA binding protein [Arabidopsis lyrata	0.341	0.391	0.444	1e-47
4914428	545	putative protein [Arabidopsis thaliana]	0.342	0.433	0.428	2e-46

>gi|297744422|emb|CBI37684.3| unnamed protein product [Vitis vinifera]

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 311/702 (44%), Positives = 424/702 (60%), Gaps = 41/702 (5%)

Query: 1   MDLDTDLFAD-ESGPAVNHVRG--RFQPKAKPRPRNERTASVDVIDKDSQLLDPVVSSVP 57
           +  D D F D   GPA ++VRG  +FQPKAK +PR E +ASV     D     PV  +  
Sbjct: 232 LGFDLDPFDDILPGPATSNVRGSGKFQPKAKSQPRKETSASVTTTLPDVTKEKPVTLASI 291

Query: 58  ASEVVRTVE-------HFKENESSE------------NALHSEVTASDGCGDLLSSFQKA 98
             +  ++V+        F +++ S             +ALHSEV  SDG GD  SS+ K+
Sbjct: 292 GIDAAQSVQPANVVGVTFCDDDRSSVMVNPSGPLDAIDALHSEVAISDGNGDWNSSYGKS 351

Query: 99  AGQNADVLSGLESLNDFQSQ------SSNGTEMPALIVSDYNGGEAVVFEGLSSDNNAAP 152
            G+NAD+ SGLE L+DF SQ      S+     P + ++   G + +    + +D     
Sbjct: 352 TGENADIFSGLEYLDDFLSQPATVTVSAASKPQPQVNMNALPGNKFLESYPVYTDAEGRL 411

Query: 153 GVCDAAQAETSADMFLTQDP---ISCGQAALTNNAGGIPVDDARLEREVQQDGAFPDLNF 209
              +A     S +  + ++P       QA +  N     +D+ RL+ E  +  AF  L  
Sbjct: 412 SPSEAQNLPASNNKDIGEEPEDQAGGRQADVCKNDQDFQIDNRRLQPEEVE--AFSGLET 469

Query: 210 LDSTSEEAVASGQRAAKYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGSQF 269
           LD  S+  +ASGQ   +   + ++ T+ +K +   VPHPD VESV  S +A  + S +++
Sbjct: 470 LDILSKATLASGQHMGENPSQSKLHTDKDKPSFD-VPHPDTVESVSCSQDAHLLPSETEY 528

Query: 270 MSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQH 329
           M E SIPA    +  D+SS+    +   DPT  E PVN +  + A+++  DAAASGD+  
Sbjct: 529 MDEDSIPAFPAGEVLDFSSVRFSDSASTDPTY-ELPVNNK--DLAKSANLDAAASGDVHS 585

Query: 330 EDF-PATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVD 388
               P    S+S+ G++ K ST   LSQ+  +SS A  + E GK  R+LRK ++  ELVD
Sbjct: 586 AGAGPKIPGSESSKGRKRKTSTGSVLSQKGQKSSTAVDKNETGKSSRRLRKRILTHELVD 645

Query: 389 EPDNEARNDGSFSAEPPSNAV-DEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRK 447
           E ++EAR++G+  AEPP N+V DED         +  S KKRAPRKS ++V+EN K VRK
Sbjct: 646 ESEDEARDNGAKPAEPPINSVADEDRNRDDECKVKNLSRKKRAPRKSMKSVAENEKPVRK 705

Query: 448 RKKANEASD-TDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKE 506
           RK ANE  D + K PPKKFSHSTRRKRR V+K LL+TPEDEIDPQK+P++DLI+L+E +E
Sbjct: 706 RKNANETGDKSTKEPPKKFSHSTRRKRRCVDKTLLETPEDEIDPQKLPIRDLIVLSEMRE 765

Query: 507 RLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFN 566
           R+ +KEA ++  PL NQSA+ S   + + N  ET A+EQ   S  D    R+Q   H+ N
Sbjct: 766 RM-NKEASSSKVPLANQSADDSYLHDSFDNGWETGATEQARASNDDEENVRIQSSSHYIN 824

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
           YQS+M KTPT RWSK +TELFYEA++QFGTD SMI QLFPGRTR QVKLKYK EER+HPL
Sbjct: 825 YQSYMDKTPTSRWSKSDTELFYEAVQQFGTDFSMIMQLFPGRTRNQVKLKYKMEERKHPL 884

Query: 627 RLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDSASM 668
           RL EA TNRAKDHSHFE VIEQL+Q AAQ  Q++K+++S  +
Sbjct: 885 RLFEASTNRAKDHSHFELVIEQLKQVAAQEEQNSKQENSVGL 926

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475125|ref|XP_003631592.1| PREDICTED: uncharacterized protein LOC100854024 [Vitis vinifera]

 Score =  479 bits (1233), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 327/764 (42%), Positives = 432/764 (56%), Gaps = 104/764 (13%)

Query: 1   MDLDTDLFAD-ESGPAVNHVRG--RFQPKAKPRPRNERTASVDVIDKDSQLLDPVV---- 53
           +  D D F D   GPA ++VRG  +FQPKAK +PR E +ASV     D     PV     
Sbjct: 232 LGFDLDPFDDILPGPATSNVRGSGKFQPKAKSQPRKETSASVTTTLPDVTKEKPVTLASI 291

Query: 54  -----SSVPASEVVRT----------------------VEH--------FKENESSE--- 75
                 SV  + VV                        +EH        F +++ S    
Sbjct: 292 GIDAAQSVQPANVVGNRLTDSVGPSSTTSGMLGAKEPLIEHVGSFSGVTFCDDDRSSVMV 351

Query: 76  ---------NALHSEVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGT--- 123
                    +ALHSEV  SDG GD  SS+ K+ G+NAD+ SGLE L+DF SQ +  T   
Sbjct: 352 NPSGPLDAIDALHSEVAISDGNGDWNSSYGKSTGENADIFSGLEYLDDFLSQPATVTVSA 411

Query: 124 --------EMPAL----------IVSDYNG------------------GEAVVFEGLSSD 147
                    M AL          + +D  G                  GE      LSS 
Sbjct: 412 ASKPQPQVNMNALPGNKFLESYPVYTDAEGRLSPSEAQNLPASNNKDIGEEPGISILSSV 471

Query: 148 NNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVDDARLEREVQQDGAFPDL 207
           + AA  V D    +T   + +T+D     QA +  N     +D+ RL+ E  +  AF  L
Sbjct: 472 DLAA-AVYDPTPDQTYPILSVTEDQAGGRQADVCKNDQDFQIDNRRLQPEEVE--AFSGL 528

Query: 208 NFLDSTSEEAVASGQRAAKYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGS 267
             LD  S+  +ASGQ   +   + ++ T+ +K +   VPHPD VESV  S +A  + S +
Sbjct: 529 ETLDILSKATLASGQHMGENPSQSKLHTDKDKPSFD-VPHPDTVESVSCSQDAHLLPSET 587

Query: 268 QFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDM 327
           ++M E SIPA    +  D+SS+    +   DPT  E PVN +  + A+++  DAAASGD+
Sbjct: 588 EYMDEDSIPAFPAGEVLDFSSVRFSDSASTDPTY-ELPVNNK--DLAKSANLDAAASGDV 644

Query: 328 QHEDF-PATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPEL 386
                 P    S+S+ G++ K ST   LSQ+  +SS A  + E GK  R+LRK ++  EL
Sbjct: 645 HSAGAGPKIPGSESSKGRKRKTSTGSVLSQKGQKSSTAVDKNETGKSSRRLRKRILTHEL 704

Query: 387 VDEPDNEARNDGSFSAEPPSNAV-DEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTV 445
           VDE ++EAR++G+  AEPP N+V DED         +  S KKRAPRKS ++V+EN K V
Sbjct: 705 VDESEDEARDNGAKPAEPPINSVADEDRNRDDECKVKNLSRKKRAPRKSMKSVAENEKPV 764

Query: 446 RKRKKANEASD-TDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEY 504
           RKRK ANE  D + K PPKKFSHSTRRKRR V+K LL+TPEDEIDPQK+P++DLI+L+E 
Sbjct: 765 RKRKNANETGDKSTKEPPKKFSHSTRRKRRCVDKTLLETPEDEIDPQKLPIRDLIVLSEM 824

Query: 505 KERLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHF 564
           +ER+ +KEA ++  PL NQSA+ S   + + N  ET A+EQ   S  D    R+Q   H+
Sbjct: 825 RERM-NKEASSSKVPLANQSADDSYLHDSFDNGWETGATEQARASNDDEENVRIQSSSHY 883

Query: 565 FNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREH 624
            NYQS+M KTPT RWSK +TELFYEA++QFGTD SMI QLFPGRTR QVKLKYK EER+H
Sbjct: 884 INYQSYMDKTPTSRWSKSDTELFYEAVQQFGTDFSMIMQLFPGRTRNQVKLKYKMEERKH 943

Query: 625 PLRLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDSASM 668
           PLRL EA TNRAKDHSHFE VIEQL+Q AAQ  Q++K+++S  +
Sbjct: 944 PLRLFEASTNRAKDHSHFELVIEQLKQVAAQEEQNSKQENSVGL 987

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543763|ref|XP_002512944.1| conserved hypothetical protein [Ricinus communis] gi|223547955|gb|EEF49447.1| conserved hypothetical protein [Ricinus communis]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 314/746 (42%), Positives = 427/746 (57%), Gaps = 104/746 (13%)

Query: 1   MDLDTDLFAD-ESGPAVNHVR--GRFQPKAKPRPRNERTASVDV---------------- 41
           M+LD D FAD    P+++ VR  G+FQP+AK RPR   + +V +                
Sbjct: 251 MELDLDPFADILPPPSISSVRNGGKFQPRAKARPRKGTSETVAIAASTSTMEEQASLVSH 310

Query: 42  ----------IDK-DSQLLDPVVSSVPASEVVRTVEHFKENESSEN---ALHSEVTASD- 86
                     +D  D +L DPV SS+ + E++ + E  + N+  +N    L S+V +S  
Sbjct: 311 VSDNLQPAKFVDAGDGRLRDPVPSSLYSLEILVSKESLR-NDDYKNFGVLLSSDVMSSGL 369

Query: 87  ----------------GCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMPALIV 130
                              DL     K+ G+N D+ SGLE ++D  +QS + TE+P  + 
Sbjct: 370 VNSSQLLSTDAVHLGGATRDLHFGLAKSMGENTDIFSGLEYIHDLVTQSPSSTEIP--VH 427

Query: 131 SDYNGGEAVVFEGLSSDNNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVD 190
           S     E   F   +S N++A G C       S D+    DP+SC +AA       I  D
Sbjct: 428 SSNEETEGSRFPAQNSVNSSALGAC-------SVDL---PDPVSCNEAA-------IWTD 470

Query: 191 DARLEREVQQDGAFPDLNFLDSTSEEAVASGQRAAKYKPRPQVRTESEKFNISSVPHPDA 250
           + R   EV++ G F +L   D+ SE       R   ++PR +V+T  EK  +S++P  DA
Sbjct: 471 NRR--PEVEEAGVFSNLGRPDNLSESISEYNTR--NFQPRQKVQTGKEKSTVSTLPQ-DA 525

Query: 251 VESVMHSPNAQFVSSGSQFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEEL 310
           V+SV  S NA+F  S + +M  GSIP    +D  DYSS+       PD T+S F +NEE 
Sbjct: 526 VDSVASSSNAEFEPSETMYMDVGSIPTFPSDDVLDYSSMSFSNCISPDATTSGFLLNEEQ 585

Query: 311 TNFAETSFTDAAASGD---MQHEDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKE 367
            N AE     A+ S D   +  ED P     +++  +  K+S++L  SQ+  E+S AG+ 
Sbjct: 586 INLAE-----ASRSSDPNVLCQEDLPVEAVKENSKSRRRKSSSLLISSQKFGEASLAGEM 640

Query: 368 TEVGKLLRQLRKGVVVPELVDEPDNEARNDGSFSAEPPSNAV-DEDEGDV---------G 417
              GK  RQLRK    P+LVDEP++EA ++  F ++  SN++ DE++GD           
Sbjct: 641 GGSGKSSRQLRKRTAAPQLVDEPEDEACDNDGFPSKASSNSIADEEDGDYDYRVDEDNDN 700

Query: 418 GNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASD-TDKNPPKKFSHSTRRKRRIV 476
            ++ E  S KKRA  K K+  ++ GKTVR+RK+  +AS+   + P KKFSHSTRRK R+ 
Sbjct: 701 EDALENKSRKKRASEKLKKPAADEGKTVRRRKRDTDASEQLTQQPRKKFSHSTRRKNRL- 759

Query: 477 NKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQSAEHSSREEDYHN 536
            K+LL  PEDEID Q++P++D+ILLA Y+E LASKEAK +     NQS  +S   ED HN
Sbjct: 760 -KDLLSMPEDEIDFQRLPVRDIILLAGYRESLASKEAKESKNASTNQSTANSFHGEDSHN 818

Query: 537 EDETFASEQDNGSFGDPATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGT 596
           E++T  SEQ  G   D      Q  +  FNY SFM KTPT RWSKQETELFYE I+QFGT
Sbjct: 819 EEDTVTSEQSGGHIND------QSNI-LFNYHSFMDKTPTARWSKQETELFYEGIQQFGT 871

Query: 597 DLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQFAAQA 656
           DLSMIQQLFPGRTR Q+KLKYKKEER+HPLRL++AL NRAKDHSHFE+VIEQLQQ A QA
Sbjct: 872 DLSMIQQLFPGRTRHQIKLKYKKEERQHPLRLSDALRNRAKDHSHFEKVIEQLQQVATQA 931

Query: 657 AQDAKEDDSASMIDEDLEELNPQYNR 682
            Q+   D S  + DE+  ELNP+ N+
Sbjct: 932 EQECNRDASVDVTDEE-AELNPETNQ 956

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107393|ref|XP_002314468.1| predicted protein [Populus trichocarpa] gi|222863508|gb|EEF00639.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 182/404 (45%), Positives = 250/404 (61%), Gaps = 35/404 (8%)

Query: 285  DYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQHEDFPATTESQSAMGK 344
            D SS+      P DP +SEF V++   +F E++    A +  ++ ED P   E +S+   
Sbjct: 667  DDSSMHPGDFLPFDPCTSEFQVDQNQKDFTESNCL--ANANVVRSEDVPVVPEKESSKSG 724

Query: 345  ETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVDEPDNEARNDGSFSAEP 404
            + K  +  + S++  +SS A                   P++VDE D EA ++G    E 
Sbjct: 725  KRKVFSASNCSRKSKKSSLAAG-----------------PQVVDELD-EAHDNGGL-PEA 765

Query: 405  PSNAVDEDEGDVGGNSAEKTSEKKRA---------PRKSKETVSENGKTVRKRKKANE-A 454
            P ++VDE++ D      E++ ++ +           +KSKE V+EN K VRKR ++N+ A
Sbjct: 766  PGSSVDEEDNDYEPRGDEESDDENKVEIASRKKRASKKSKEPVTENEKPVRKRNRSNDTA 825

Query: 455  SDTDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAK 514
              + + P KKFSHSTRR +R VNK+LL  PEDEID +++P++D+IL AEYKERLA+  +K
Sbjct: 826  EQSMQKPGKKFSHSTRRNKRCVNKDLLNMPEDEIDFKRLPIRDIILFAEYKERLATTTSK 885

Query: 515  ATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFNYQSFMKKT 574
                P  NQS ++    E  HNE++ FASEQD     D    R QP    FNYQSFM + 
Sbjct: 886  ---IPPNNQSTDNPFHGEYSHNEEDGFASEQDITHGDDQTYVRAQPSSSLFNYQSFMDRA 942

Query: 575  PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTN 634
            P  RWSKQ+TELFYE I+QFGTDLSMIQQLFPGRTR QVKLKYKKEER+HPLRL EAL++
Sbjct: 943  PNSRWSKQDTELFYEGIQQFGTDLSMIQQLFPGRTRHQVKLKYKKEERQHPLRLHEALSS 1002

Query: 635  RAKDHSHFEQVIEQLQQFAA-QAAQDAKEDDSASMIDEDLEELN 677
            R KD+S+FE++IEQLQ+ A  Q  Q++ +DD   +  E+  ELN
Sbjct: 1003 RPKDNSYFEKLIEQLQEVAGTQEEQESYKDDLVDVSGEEDAELN 1046

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449484998|ref|XP_004157041.1| PREDICTED: uncharacterized protein LOC101225369 [Cucumis sativus]

 Score =  279 bits (713), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 196/476 (41%), Positives = 277/476 (58%), Gaps = 19/476 (3%)

Query: 210 LDSTSEEAVASGQRAA-KYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGSQ 268
           +D+ S       +R+A KY P+P++RT  +    + +  P+   S M  P+ Q +S  + 
Sbjct: 1   MDTLSSVTTTPSERSACKYIPKPKMRTAGDA--CTQISQPEI--SNMLPPSPQVISCDTN 56

Query: 269 FMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQ 328
            M+E SI  +  +   + SSI+ DG  P +   +E PVN E  +F   S+ D     D  
Sbjct: 57  GMNEASI-GTHSDGVLNDSSINFDGYAPVN-QDTETPVNVE--SFTFDSYGDILVD-DFN 111

Query: 329 HEDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVD 388
            +D  A    ++    E + S   ++SQ+       G+E E  K  R+LRK V     +D
Sbjct: 112 SDDQDAMLREENGKNDEEEPSRQSNVSQQQKICPSVGEEIEHSKTSRKLRKKVS--HQLD 169

Query: 389 EPDNEARNDGSFSAEPPSNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKR 448
           EP++    +  F  EP SN+     G    N   K  + ++   KS +  SEN K  RKR
Sbjct: 170 EPEDGVDVNRKFPNEPSSNSGMHGNG-YNKNENPKGGQGRKTSTKSSKPSSENEKPTRKR 228

Query: 449 KKANEASD--TDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKE 506
           K+AN+A      +  PKKFSHSTRR RR VNK LL+TPED+ID QK+  +DLI+  E+KE
Sbjct: 229 KEANKAVPDLQAEKRPKKFSHSTRRNRRQVNKVLLETPEDDIDFQKISFRDLIIYHEHKE 288

Query: 507 RLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFN 566
           +L  K A +T     NQ  + +S EE Y++ +E  ASEQ  G+  D   D V     +FN
Sbjct: 289 KLEKKVA-STRKSETNQRTD-TSAEEIYNDGEENLASEQGKGTDDDEMPDVVDMTSAYFN 346

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
           YQSFM KTP  +WSK +TE FYEA+RQFGTD  MIQQLFPG+TR+Q+KLK+K EER HP 
Sbjct: 347 YQSFMDKTPRTKWSKSDTERFYEAVRQFGTDFCMIQQLFPGKTRRQIKLKFKSEERHHPF 406

Query: 627 RLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDD-SASMIDEDLEELNPQYN 681
           RL++A+TNRAKDHS F  +IEQL++ AA+A  ++ +D+ + +  DE+  EL+PQ N
Sbjct: 407 RLSDAITNRAKDHSQFLSLIEQLKE-AAKAKHESNQDELTENTGDEEQPELSPQTN 461

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464320|ref|XP_004149877.1| PREDICTED: uncharacterized protein LOC101216268 [Cucumis sativus]

 Score =  279 bits (713), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 196/476 (41%), Positives = 277/476 (58%), Gaps = 19/476 (3%)

Query: 210 LDSTSEEAVASGQRAA-KYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGSQ 268
           +D+ S       +R+A KY P+P++RT  +    + +  P+   S M  P+ Q +S  + 
Sbjct: 1   MDTLSSVTTTPSERSACKYIPKPKMRTAGDA--CTQISQPEI--SNMLPPSPQVISCDTN 56

Query: 269 FMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQ 328
            M+E SI  +  +   + SSI+ DG  P +   +E PVN E  +F   S+ D     D  
Sbjct: 57  GMNEASI-GTHSDGVLNDSSINFDGYAPVN-QDTETPVNVE--SFTFDSYGDILVD-DFN 111

Query: 329 HEDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVD 388
            +D  A    ++    E + S   ++SQ+       G+E E  K  R+LRK V     +D
Sbjct: 112 SDDQDAMLREENGKNDEEEPSRQSNVSQQQKICPSVGEEIEHSKTSRKLRKKVS--HQLD 169

Query: 389 EPDNEARNDGSFSAEPPSNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKR 448
           EP++    +  F  EP SN+     G    N   K  + ++   KS +  SEN K  RKR
Sbjct: 170 EPEDGVDVNRKFPNEPSSNSGMHGNG-YNKNENPKGGQGRKTSTKSSKPSSENEKPTRKR 228

Query: 449 KKANEASD--TDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKE 506
           K+AN+A      +  PKKFSHSTRR RR VNK LL+TPED+ID QK+  +DLI+  E+KE
Sbjct: 229 KEANKAVPDLQAEKRPKKFSHSTRRNRRQVNKVLLETPEDDIDFQKISFRDLIIYHEHKE 288

Query: 507 RLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFN 566
           +L  K A +T     NQ  + +S EE Y++ +E  ASEQ  G+  D   D V     +FN
Sbjct: 289 KLEKKVA-STRKSETNQRTD-TSAEEIYNDGEENLASEQGKGTDDDEMPDVVDMTSAYFN 346

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
           YQSFM KTP  +WSK +TE FYEA+RQFGTD  MIQQLFPG+TR+Q+KLK+K EER HP 
Sbjct: 347 YQSFMDKTPRTKWSKSDTERFYEAVRQFGTDFCMIQQLFPGKTRRQIKLKFKSEERHHPF 406

Query: 627 RLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDD-SASMIDEDLEELNPQYN 681
           RL++A+TNRAKDHS F  +IEQL++ AA+A  ++ +D+ + +  DE+  EL+PQ N
Sbjct: 407 RLSDAITNRAKDHSQFLSLIEQLKE-AAKAKHESNQDELTENTGDEEQPELSPQTN 461

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495735|ref|XP_003516729.1| PREDICTED: uncharacterized protein LOC100792788 [Glycine max]

 Score =  256 bits (654), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 238/743 (32%), Positives = 347/743 (46%), Gaps = 176/743 (23%)

Query: 22  RFQPKAKPRPR------------NERT-ASVDVIDKDSQLLDPVVSS------------- 55
           +F+PK KPRPR            N R   SV++    +      +S              
Sbjct: 252 KFKPKIKPRPRAGNVPAIASDSSNVRMEKSVELPTSCTNNFQSFLSCGDGSGGVNQSTSL 311

Query: 56  -VPASEVVRTVEHFK-------------ENES----------SENALHSEVTASDGCGDL 91
            +P SE++RT E  K             +N+S          S N + SE    +G  D 
Sbjct: 312 PLPTSEILRTTELPKKFDDSSSSIPFSEDNKSLAAAIPSQLDSPNVMLSEDAVHNGTTDW 371

Query: 92  LSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMPALIVSDYNGGEAVVFEGLSSDNNAA 151
            SSF+K+ G+ AD+ SGLESL+D                                     
Sbjct: 372 SSSFRKSPGEAADIFSGLESLHD------------------------------------- 394

Query: 152 PGVCDAAQAETSADMFLTQDPISCGQAALTNNAGGIPVDDARLEREVQQDGAFPDLNFLD 211
                          F+TQ     G+ AL +  G          +  +++   P  + ++
Sbjct: 395 ---------------FITQAATGTGKPALHSFNG----------KSGEENFVTPASSSIN 429

Query: 212 STSEEAVASGQRAAKYKPRPQVRTESEKFNISSVPHPDAVESVMHSPNAQFVSSGSQFMS 271
           S  E  +   QR  +Y   PQ   +S  FN ++V + D      HS N +  S   + + 
Sbjct: 430 SFGECDITQAQRCPEYH-TPQ---DSLTFNEAAVLNEDNT----HSSNRR--SETEEIVD 479

Query: 272 EGSIPASVPEDCFDYSSIDLDGTTPPDPTSSEFPVNEELTNFAETSFTDAAASGDMQHED 331
               PA   +D  DY  +     +  DPT    PV+EELTN A     D+    D  H D
Sbjct: 480 LN--PACAGDDVIDYQFM----KSGKDPTG--IPVHEELTNAA-----DSPTLADFLHAD 526

Query: 332 FPATTESQSAMGKETKASTVLSL--SQRLIESSQAGKETEVGKLLRQLRKGVVVPELVDE 389
              T E + +  ++   ST  SL   +R I    AG+E +  K  RQLRK     +   +
Sbjct: 527 --VTREKEDSNKRKNDGSTSCSLRKKRRFI----AGEEDKGAKTSRQLRK-----QAAHK 575

Query: 390 PDNEARNDG---SFSAEPPSNA----VDEDEGDVGGNSAEKTSEKKRAPRKS-KETVSEN 441
           P N + N+    +   +PP N+    + E++ D   N     S KKR  + S K++++++
Sbjct: 576 PANSSFNEDVEDNNDLDPPYNSNGDELQENDDDYEVNYP---SRKKRVSKSSQKKSMAKS 632

Query: 442 GKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILL 501
           GKT +K KKA E  +  + P KKFSHSTRRK+R V+K LL+ PEDE+D  ++P+KD+ILL
Sbjct: 633 GKTSQKPKKAYEDLEKTEEPLKKFSHSTRRKKRCVDKALLEIPEDELDRLRIPIKDIILL 692

Query: 502 AEYKERLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFG---------- 551
            E++ERLA KEA  +     NQS   S  E   +NE        D+G++           
Sbjct: 693 EEHRERLAKKEAMTSNISSTNQSGGDSLHEAGAYNEGAYNEGAYDDGAYNDGEFLGSEDG 752

Query: 552 -DPATDRVQPRVH----FFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQL-F 605
            DP  D+    +       NYQSF +KTP  +WSKQETELFYEA+R+ GTD SMIQ++ F
Sbjct: 753 RDPYDDQANEGIASTSVLLNYQSFREKTPRGKWSKQETELFYEAVREMGTDFSMIQEIFF 812

Query: 606 PGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDS 665
           P ++R Q+KLKYK EER+ PL+LT+A+ NRAKDH H +  IE+L Q A+  A+D   D S
Sbjct: 813 PNKSRHQIKLKYKNEERQQPLQLTDAVNNRAKDHPHSKLFIERL-QLASAKAEDPCRDAS 871

Query: 666 ASMIDEDLEELNPQYNRYICVFA 688
             ++ E++ +L    N  +   A
Sbjct: 872 DFVMAEEVVDLTAGTNEEVAEVA 894

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357519631|ref|XP_003630104.1| Transcription factor tfiiib component [Medicago truncatula] gi|355524126|gb|AET04580.1| Transcription factor tfiiib component [Medicago truncatula]

 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 108/226 (47%), Positives = 148/226 (65%), Gaps = 11/226 (4%)

Query: 461 PPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPL 520
           PPKKF H++RR++R V+K LL+   D +D + +P++D+IL+AE+KERLA KEA  + TP 
Sbjct: 482 PPKKFPHASRRRKRCVDKALLEN--DYLDQRTIPIRDIILIAEHKERLAKKEATPSQTPS 539

Query: 521 KNQSAEHSSREEDYHNEDETFASEQDNGSFGDP--------ATDRVQPRVHFFNYQSFMK 572
            NQS      + D+H+E +    E+  GS  +         AT+++       NYQSFM 
Sbjct: 540 TNQSDGDFHHDVDFHHEADANYEEEFFGSDDEFRDLDDDDRATEKITSTTPLLNYQSFMD 599

Query: 573 KTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEAL 632
           K P  +WS ++TE FYEAIRQFGTD +MIQQLFP +TR Q+KLKYKKEER+HPL LT+A+
Sbjct: 600 KAPRGKWSTRDTEKFYEAIRQFGTDFTMIQQLFPDKTRHQIKLKYKKEERQHPLLLTDAM 659

Query: 633 TNRAKDHSHFEQVIEQLQQFAAQAAQDAKEDDSASMIDEDLEELNP 678
            NR KD S F+ V+E+ +Q  +   +D  ED S  MI E  E  +P
Sbjct: 660 NNRGKDLSFFKLVVEKQKQ-NSNKEEDTAEDASDLMIGEGEENEDP 704

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797894|ref|XP_002866831.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata] gi|297312667|gb|EFH43090.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 166/252 (65%), Gaps = 17/252 (6%)

Query: 406 SNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASD--TDKNPPK 463
           +N V  +E +  G + E+ S ++   RKSK   S      RKRKK +E  +  ++K   K
Sbjct: 280 NNTVTGEEENCLGKTVEEQSGRESKTRKSKRATS------RKRKKTSEEPNKSSEKTEQK 333

Query: 464 KFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQ 523
           KF HS+RR++R + KELL+TP+DEI  + +P++D++ L EYKE +  KEAK  G     +
Sbjct: 334 KFKHSSRRQKRTLEKELLETPDDEI--RFLPLRDMLRLVEYKEWMEKKEAKGAGVQPSQE 391

Query: 524 SAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRV----HFFNYQSFMKKTPTVRW 579
           S  ++S E  YH++   F  E + G FG  +++  +  V       NYQ++M KT   RW
Sbjct: 392 SNMNAS-ESQYHSQG--FDDEDEFGEFGIESSENQENNVVKPDSPVNYQTYMNKTSRTRW 448

Query: 580 SKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDH 639
           SKQ+TELFYE I++FG++LSMIQQLFP RTR+Q+KLK+K EER +PL+L +AL++R+K  
Sbjct: 449 SKQDTELFYEGIQEFGSNLSMIQQLFPNRTREQMKLKFKLEERRNPLKLNDALSSRSKHF 508

Query: 640 SHFEQVIEQLQQ 651
           +HF+ VI++LQQ
Sbjct: 509 THFKNVIKKLQQ 520

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4914428|emb|CAB43631.1| putative protein [Arabidopsis thaliana] gi|7270899|emb|CAB80579.1| putative protein [Arabidopsis thaliana]

 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 108/252 (42%), Positives = 163/252 (64%), Gaps = 16/252 (6%)

Query: 406 SNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASD--TDKNPPK 463
           +N V  +E +  GN+ E+ S+++    KSK   S      RKRKK +E  +  ++K   K
Sbjct: 224 NNTVTGEEENCMGNTVEEQSKRESKTGKSKRATS------RKRKKTSEEPNKSSEKTEQK 277

Query: 464 KFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQ 523
           KF HS+RR++R + KELL+TP+ EI  + +P++D++ L EYKE +  KEAK  G     +
Sbjct: 278 KFKHSSRRQKRTLEKELLETPDHEI--RSLPLRDMLRLVEYKEWMQKKEAKGAGVQPSQE 335

Query: 524 SAEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRV----HFFNYQSFMKKTPTVRW 579
           S   +     YH++   F  E + G FG  +++  +  V       NYQ++M KT   RW
Sbjct: 336 SNNMNGSGSQYHSQG--FDEEDEFGDFGIESSEYQENNVVKPDSPVNYQTYMNKTSRTRW 393

Query: 580 SKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRAKDH 639
           SK++TELFYE I++FG++LSMIQQLFP RTR+Q+KLK+K EER +PL+L +AL++R+K  
Sbjct: 394 SKEDTELFYEGIQEFGSNLSMIQQLFPERTREQMKLKFKLEERRNPLKLNDALSSRSKHF 453

Query: 640 SHFEQVIEQLQQ 651
           +HF+ VI++LQQ
Sbjct: 454 THFKNVIKKLQQ 465

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	689
ASPGD|ASPL0000008164	573	AN6575 [Emericella nidulans (t	0.547	0.657	0.217	1.3e-13
DICTYBASE|DDB_G0283405	457	bdp1 "transcription factor III	0.349	0.527	0.255	3.7e-13
SGD|S000004984	594	BDP1 "Essential subunit of RNA	0.358	0.415	0.262	2.7e-10
ZFIN|ZDB-GENE-050809-88	1627	zgc:162472 "zgc:162472" [Danio	0.265	0.112	0.340	3.1e-10
POMBASE|SPCC1919.14c	520	bdp1 "transcription factor TFI	0.320	0.425	0.272	1.3e-09
MGI|MGI:1347077	2467	Bdp1 "B double prime 1, subuni	0.447	0.124	0.246	2.2e-09
UNIPROTKB|E1C7N5	857	E1C7N5 "Uncharacterized protei	0.117	0.094	0.414	6e-09
CGD|CAL0002421	662	orf19.2528 [Candida albicans (	0.345	0.359	0.293	8.5e-09
UNIPROTKB|F1SK28	2442	BDP1 "Uncharacterized protein"	0.117	0.033	0.402	1.3e-08
UNIPROTKB|A6H8Y1	2624	BDP1 "Transcription factor TFI	0.117	0.030	0.402	5.1e-08

ASPGD|ASPL0000008164 AN6575 [Emericella nidulans (taxid:162425)]

 Score = 210 (79.0 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 87/400 (21%), Positives = 162/400 (40%)

Query:   248 PDAVESVMHSPNAQFVSS----GSQFMSEGSIPASVPEDCFDYSSIDLDGTTPPDPTSSE 303
             P    +V H+P  Q  ++      +  +   +P   P    + S      TT      ++
Sbjct:    84 PTVAPTVEHAPKEQTATAIPIPAPKHKASVPVPIPAPRSTTNISPAPSASTTTTVEPVAQ 143

Query:   304 FPVNEELTNFAETSFTDAAASGDMQHEDFPATTESQSAMGKETKASTVLSLS-QRLIESS 362
              P   +  N   T         + +H       +S + +  E + S  L  S + ++ ++
Sbjct:   144 APSRPD-ENREVTRPGPDNVQNEQRHAPSDVAADSDNEVVPEGRPSKRLRTSIESVLTTT 202

Query:   363 QAGKETEVGKLLRQLRKGVVVPELVDEPDNEARNDGSFSA-EPPSNAVDEDEGDVGG--- 418
                 E E+ +L         +P L  E   E+R++         S +  + +G       
Sbjct:   203 SPQPEEELAQLATP--PSTQIPAL--EERTESRDESEVPGLARRSESAPKKKGRRASRST 258

Query:   419 -NSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVN 477
              N A K  ++++   +++E   +  + +       + SD  K+   +    ++R+  +  
Sbjct:   259 SNDAGKIKKERKRRTRNREPTPDGAELIEIAPAVVKMSDLCKDT--RTGKRSKRETELRA 316

Query:   478 KELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQSAEHSSREEDYHNE 537
              EL +  E +   Q+   KD     +       KE +   TP K+  A    R  +    
Sbjct:   317 HELAEA-ERKKSQQEGGQKDETAAKQTLNESVLKEDQTGSTPNKSSQAGPVMRIVNGEIV 375

Query:   538 DETFASEQDNGSF----GDPATDRVQPRV-HFFNYQSFMKKTPTVRWSKQETELFYEAIR 592
              +T + + D  +     GD   D V+  +    N  ++ K++ T  W +  TELFY  +R
Sbjct:   376 LDTASLQVDRHADAERNGDDLEDVVENSLTRKVNQATYGKRSKTESWDEDMTELFYRGLR 435

Query:   593 QFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEAL 632
              FGTD  +I ++FPGR+R+Q+KLK+  EER  P R+ E L
Sbjct:   436 MFGTDFMVISKMFPGRSRRQIKLKFNNEERRDPQRIRETL 475

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

DICTYBASE|DDB_G0283405 bdp1 "transcription factor IIIB subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 204 (76.9 bits), Expect = 3.7e-13, P = 3.7e-13
 Identities = 69/270 (25%), Positives = 135/270 (50%)

Query:   388 DEPDN----EARNDGSFSAEPPS-NAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVS--- 439
             D+ DN    E ++DG    E  + N  +++  ++   ++  T+        +K T+S   
Sbjct:    73 DDDDNNKNQEEKDDGLNENEKENENEKEKENKELTTPTSTTTTTTTTTSTSNKNTLSIKK 132

Query:   440 --ENGKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELL-QTPEDEIDPQKVPMK 496
               +  K  +KR K N   + ++  P + ++ T     ++ K ++  T +  ++ +K  +K
Sbjct:   133 IKKEKKVKKKRVKKNIEDNYEEIEPTEVNNYTLGD--LIKKRIIGDTMKSTLEREKA-LK 189

Query:   497 D--LILLAEYKERLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFAS--------EQD 546
             D    +L  ++  LA ++A AT +   N     S   ED +     F +        ++D
Sbjct:   190 DNQQQILNHHRRSLAQQKA-ATASARLNGEEPPSFNGEDINAPAIEFVNGQLVIKQNQED 248

Query:   547 NGSFGD-PATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLF 605
             +  +GD P  +  Q   H  N  SF K+  + RWS+ ET+ F+  ++++GTD S+++++F
Sbjct:   249 DNPYGDAPVLEDGQD--HITN-NSFSKRIASKRWSEAETQDFFIQLKRYGTDFSVLEKVF 305

Query:   606 PGRTRQQVKLKYKKEEREHPLRLTEALTNR 635
             P RTR+Q+K K+K+E+ ++P  L + L  R
Sbjct:   306 PHRTRRQLKSKFKREQNDNPNLLDDILKGR 335

GO:0005634 "nucleus" evidence=IC

GO:0000126 "transcription factor TFIIIB complex" evidence=IDA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0006384 "transcription initiation from RNA polymerase III promoter" evidence=ISS

SGD|S000004984 BDP1 "Essential subunit of RNA polymerase III transcription factor (TFIIIB)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 180 (68.4 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 70/267 (26%), Positives = 125/267 (46%)

Query:   391 DNEARNDGSFSAEPP-SNAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRK 449
             D+  RN+  FS+E   S   DE+E  V  +  +   +K R    +K  + E   T+ +  
Sbjct:   224 DSLDRNE--FSSETSTSREADENENYVI-SKVKDIPKKVRDGESAKYFIDEENFTMAELC 280

Query:   450 KAN-EASDTDKNPPK-KFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKER 507
             K N       +N  K K +   + ++R   +EL      E  P     K+     E K +
Sbjct:   281 KPNFPIGQISENFEKSKMAKKAKLEKRRHLRELRMRARQEFKPLHSLTKEEQEEEEEKRK 340

Query:   508 LASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQD--------NGSFGDPATDRVQ 559
                 +      P  ++ A H++ +    N D T A +++        N S  +   ++V 
Sbjct:   341 EERDKLLNADIPESDRKA-HTAIQLKL-NPDGTMAIDEETMVVDRHKNASIENEYKEKVD 398

Query:   560 --PRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKY 617
               P  + +NY S+ + + T  W+ +E   FY+A+  +GTD ++I QL+P R+R+QVK K+
Sbjct:   399 ENPFANLYNYGSYGRGSYTDPWTVEEMIKFYKALSMWGTDFNLISQLYPYRSRKQVKAKF 458

Query:   618 KKEEREHPLRLTEALTNRAKDHSHFEQ 644
               EE++ P+ +  AL  R+K   +F++
Sbjct:   459 VNEEKKRPILIELAL--RSKLPPNFDE 483

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0070898 "RNA polymerase III transcriptional preinitiation complex assembly" evidence=IDA;IMP

GO:0003677 "DNA binding" evidence=IEA

GO:0001026 "TFIIIB-type transcription factor activity" evidence=IC

GO:0003682 "chromatin binding" evidence=IEA

GO:0000126 "transcription factor TFIIIB complex" evidence=IDA

GO:0070896 "positive regulation of transposon integration" evidence=IDA

GO:0001112 "DNA-dependent transcriptional open complex formation" evidence=IMP

GO:0001156 "TFIIIC-class transcription factor binding" evidence=IDA;IPI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

ZFIN|ZDB-GENE-050809-88 zgc:162472 "zgc:162472" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 3.1e-10, Sum P(2) = 3.1e-10
 Identities = 67/197 (34%), Positives = 96/197 (48%)

Query:   460 NPPKKFSHSTRRKRRIVNKELLQTP--EDEIDPQKV--PMKDLILLAEYKERL--ASKEA 513
             NP K F+   ++    V  +   TP   +  DP  V  P+ +     E +ER   A +E 
Sbjct:   342 NPMKSFTEEEQKASETVLDDS-PTPISSNTPDPPAVEEPVVEDADPEEDEERTEEAQEED 400

Query:   514 KATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDR--VQPRVHFFNYQSFM 571
             K      + + AE  S   D   E  T    + NG   +PA DR  +  R     Y SF 
Sbjct:   401 KEPLLVPRVKVAEDGSLIID--EESLTVQVLRANGP--NPAEDRDPIFERGSTTTYSSFR 456

Query:   572 KKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEA 631
             K T T  WS  ETE+F+ AI   GTD SMI QLFP R R ++K K+KKEE+ +  R+ +A
Sbjct:   457 KGTYTKPWSNGETEMFFLAISMVGTDFSMIGQLFPHRGRLEIKNKFKKEEKNNAWRIDKA 516

Query:   632 LTNRAK-DHSHFEQVIE 647
                + + D   F++++E
Sbjct:   517 FKEKRRLDLDFFKKLME 533

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

POMBASE|SPCC1919.14c bdp1 "transcription factor TFIIIB complex subunit Bdp1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 173 (66.0 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 67/246 (27%), Positives = 110/246 (44%)

Query:   402 AEPPSNAVDEDEGDVGGNSAEKTS-EKKRAPRKSKETVSENGKTVRKRKKANEASDTDKN 460
             +E   +A+ +D G +G  S      EK     K  + + + G +     +      T K 
Sbjct:   199 SETKMSALCDDPG-IGRKSQRFIELEKMLFEEKRAKRIKKQGASTASSSREASLDSTIKQ 257

Query:   461 PPKKF---SHSTRRKRRIVNKELLQTPEDEI----DPQKVPMKDLI-LLAEYKERLA-SK 511
             P       S   + K  IV   L +   DE     D    P K ++  LA+  E    + 
Sbjct:   258 PLSASLLESSEPKEKEEIVGS-LEEEGTDESASLEDSLSHPTKSILDQLADKMEVDGLNN 316

Query:   512 EAKATGTP----LKNQSA-EHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFN 566
              +  + TP    +  Q   + +S E D H  D  F   ++     + +  R   RV    
Sbjct:   317 NSNYSATPRTRVVNGQIVLDETSLEVDRHERD--FVPAEEREYVEENSLSR---RVTSAT 371

Query:   567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
             + +  K  P  +W+  +TE FY+A+ Q+GTD ++I  +FP R R+Q+KLK+K+EER +P 
Sbjct:   372 WGNRQK--PE-KWNAMDTEKFYKALSQWGTDFALIANMFPTRNRRQIKLKFKQEERRNPA 428

Query:   627 RLTEAL 632
             R+ +AL
Sbjct:   429 RVNQAL 434

GO:0000126 "transcription factor TFIIIB complex" evidence=ISS

GO:0003677 "DNA binding" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006383 "transcription from RNA polymerase III promoter" evidence=ISS

MGI|MGI:1347077 Bdp1 "B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 82/332 (24%), Positives = 138/332 (41%)

Query:   333 PATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELVDEPDN 392
             P    +  + G E +     S  ++  + + A + + +     Q RK V     + +P  
Sbjct:    50 PTDVPAVDSGGAEPQEQAPGSSDEKTGDKNNAAESSTLSSASSQRRKRVSSTSSLVQPSG 109

Query:   393 EARNDGSFSAEPPSNAVDEDEGDVGGNSA-EKT--SEKKRA--PRKSKETVSENGKTVRK 447
              A      S   P + VD D        A EK   S++ R    RK +E + E  +  +K
Sbjct:   110 SAP-----SQSRPLSTVDHDAPQPNPTPAKEKQPCSDRYRIYKARKLREMLKEELRKEKK 164

Query:   448 RKKANEASDTDKNPPKKFSHSTRRKRRIV--NKELLQTPEDEIDPQK----VPMKDLILL 501
             + K   +++  + PP +   + R     +  N  +  + E E  P+K     P +D    
Sbjct:   165 QWKNKFSTNESQRPPDRSKMTMRDFIYYLPDNNPMTSSVEQEKKPEKSLAPTPTRDRQEN 224

Query:   502 AEYKERLASK--EAKATGTPL---KNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATD 556
                ++   ++  E +    PL   + + AE  S   D   E  T    +  G       D
Sbjct:   225 QSTQDANDNEDVEEEVDDGPLLVPRVKVAEDGSIILD--EESLTVEVLRTKGPCVVEEND 282

Query:   557 RVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLK 616
              +  R     Y SF K   +  WS +ET++F+ AI   GTD SMI QLFP R R ++K K
Sbjct:   283 PIFERGSTTTYSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNK 342

Query:   617 YKKEEREHPLRLTEALTN-RAKDHSHFEQVIE 647
             +K+EE+ +  R+ +A    R  D   F  +++
Sbjct:   343 FKREEKTNGWRIDKAFQEKRPFDFDFFAHLLQ 374

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISA

UNIPROTKB|E1C7N5 E1C7N5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 161 (61.7 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query:   567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
             Y SF K   T  WS +ET++F+ AI   GTD S+I +LFP R R ++K K+K+EE+ +  
Sbjct:   302 YSSFRKSFYTKPWSNKETDMFFLAISMVGTDFSLIGRLFPHRARAEIKNKFKREEKANGW 361

Query:   627 RLTEALTN-RAKDHSHFEQVIE 647
             R+ +A    R  D   F Q++E
Sbjct:   362 RIDKAFKEKRPFDFELFAQLLE 383

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

CGD|CAL0002421 orf19.2528 [Candida albicans (taxid:5476)]

 Score = 167 (63.8 bits), Expect = 8.5e-09, P = 8.5e-09
 Identities = 78/266 (29%), Positives = 112/266 (42%)

Query:   388 DEPDNEARNDGSFSAEPPSNAVDEDE---GDVGGNSAEKTSEKKRAPRKSKETVSENGKT 444
             +EPDN          + P N  DED    G+V  +  E T      P      VS N + 
Sbjct:   324 EEPDNLITTVTHIH-QIPKNINDEDADLFGEVDIDLEEVTMADLCKPTLRIGKVSTNFEL 382

Query:   445 VR------KRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDL 498
             VR      K+KKA    D +    +  S     ++   N+E  +   D+++ Q    K  
Sbjct:   383 VREAEQQLKQKKAQRRRDRELARLEGISLEDAIQK---NEEQRRGNGDDVEKQDEEPKPD 439

Query:   499 ILLAEYKERLASKEAKATGTPLKNQSAEHSSREEDYHNEDETFASEQDNGSFGDPATDRV 558
              L  E  ++ A+   + T T  K    E S+        D T  S + +  F +P T   
Sbjct:   440 SLFDEEPQQAATS-LQLTFTDGKIGFNEESAIVAK-PRADITSRSVEKSNPFANPITSTT 497

Query:   559 QPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYK 618
               R  F           T +W+ QE   FY+A+  FGTD S+I QLFP R+R+Q+K K+ 
Sbjct:   498 YSRRVF-----------TDKWTSQELNQFYQALSMFGTDFSLISQLFPHRSRKQIKSKFN 546

Query:   619 KEEREHPLRLTEALTNRAKDHSHFEQ 644
              EER  P  + E L  R K    FE+
Sbjct:   547 LEERRFP-EVVE-LALRRKLPVDFEE 570

GO:0000126 "transcription factor TFIIIB complex" evidence=IEA

GO:0070896 "positive regulation of transposon integration" evidence=IEA

GO:0001112 "DNA-dependent transcriptional open complex formation" evidence=IEA

GO:0070898 "RNA polymerase III transcriptional preinitiation complex assembly" evidence=IEA

GO:0001156 "TFIIIC-class transcription factor binding" evidence=IEA

UNIPROTKB|F1SK28 BDP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query:   567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
             Y SF K   +  WS +ET++F+ AI   GTD SMI QLFP R R ++K K+K+EE+ +  
Sbjct:   295 YSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGW 354

Query:   627 RLTEALTN-RAKDHSHFEQVIE 647
             R+ +A    R  D   F  +++
Sbjct:   355 RIDKAFQEKRPFDFDFFAHLLQ 376

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|A6H8Y1 BDP1 "Transcription factor TFIIIB component B'' homolog" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
 Identities = 33/82 (40%), Positives = 49/82 (59%)

Query:   567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
             Y SF K   +  WS +ET++F+ AI   GTD SMI QLFP R R ++K K+K+EE+ +  
Sbjct:   291 YSSFRKNYYSKPWSNKETDMFFLAISMVGTDFSMIGQLFPHRARIEIKNKFKREEKTNGW 350

Query:   627 RLTEALTN-RAKDHSHFEQVIE 647
             R+ +A    R  D   F  +++
Sbjct:   351 RIDKAFQEKRPFDFDFFAHLLQ 372

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006383 "transcription from RNA polymerase III promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_X000341 hypothetical protein (1117 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	689
COG5118	507	COG5118, BDP1, Transcription initiation factor TFI	1e-15
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	4e-09
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	3e-08
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	5e-08
cd11661	46	cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Doma	0.001

>gnl|CDD|227448 COG5118, BDP1, Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

 Score = 80.1 bits (197), Expect = 1e-15
 Identities = 66/238 (27%), Positives = 108/238 (45%), Gaps = 9/238 (3%)

Query: 402 AEPPSNAVDEDEGDVGGNSAEKTSEKK-RAPRKSKETVSENGKTVRKRKKANEASDTDKN 460
           +   S + + DE +    S  K   KK R    +K  + E   T+ +  K N      +N
Sbjct: 186 SSETSTSREADENENYVISKVKDIPKKVRDGESAKYFIDEENFTMAELCKPNFPIQISEN 245

Query: 461 PPK-KFSHSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAKATGTP 519
             K K +   + ++R   K L  +   E+D       D       ++R + K+  +    
Sbjct: 246 FEKSKMAKKAKLEKRRHVKFLEGSNTHEMDQLLKHFLDNS--NFRQDRRSRKKKASASRD 303

Query: 520 LKNQSAEHSSREEDYH---NEDETFASEQDNGSFGDPATDRVQ--PRVHFFNYQSFMKKT 574
           + +Q+AE     ++ H   +E   +     N S      + V+  P        +F KK 
Sbjct: 304 ISDQNAEEILMIKNGHIVVDEANMYVDRHKNASIEVEEMEVVEENPFARIVTSSTFGKKK 363

Query: 575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEAL 632
             +RWSK+E E FY+A+  +GTD S+I  LFP R R+Q+K K+ KEE+ +P R+ EAL
Sbjct: 364 GALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERINEAL 421

Length = 507

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 52.1 bits (126), Expect = 4e-09
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 578 RWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK 619
            W+ +E EL  EA+++ G  + S I +  PGRT  Q K ++  
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNN 45

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)

Query: 578 RWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK 619
            W+++E EL  EA++++G  +   I +  PGRT +Q + +++ 
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 49.1 bits (118), Expect = 5e-08
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 1/43 (2%)

Query: 578 RWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK 619
            W+++E EL  E ++++G  +   I +  PGRT +Q + +++ 
Sbjct: 3   EWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRN 45

Length = 49

>gnl|CDD|212559 cd11661, SANT_MTA3_like, Myb-Like Dna-Binding Domain of MTA3 and related proteins

 Score = 36.8 bits (86), Expect = 0.001
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 579 WSKQETELFYEAIRQFGTDLSMIQQLF-PGRTRQQV 613
           WS+ E +LF E +R++G D   I+Q F P ++  ++
Sbjct: 2   WSESEAKLFEEGLRKYGKDFHDIRQDFLPWKSVGEL 37

Members in this SANT/myb family include domains found in mouse metastasis-associated protein 3 (MTA3) proteins and arginine-glutamic dipeptide (RERE) repeats proteins. SANT (SWI3, ADA2, N-CoR and TFIIIB) DNA-binding domains are a diverse set of proteins that share a common 3 alpha-helix bundle. MTA3 has been shown to interact with nucleosome remodeling and deacetylase (NuRD) proteins CHD4 and HDAC1, and the core cohesin complex protein RAD21 in the ovary, and regulate G2/M progression in proliferating granulosa cells. RERE belongs to the atrophin family and has been identified as a nuclear receptor corepressor; altered expression levels of RERE are associated with cancer in humans while mutations of Rere in mice cause failure in closing the anterior neural tube and fusion of the telencephalic and optic vesicles during embryogenesis. Length = 46

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	689
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	99.93
KOG2009	584	consensus Transcription initiation factor TFIIIB,	99.91
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.58
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.34
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.22
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.52
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	95.72
PLN03212	249	Transcription repressor MYB5; Provisional	95.27
PLN03091	459	hypothetical protein; Provisional	94.7
KOG1194	534	consensus Predicted DNA-binding protein, contains	94.29
KOG2009	584	consensus Transcription initiation factor TFIIIB,	93.65
KOG0048	238	consensus Transcription factor, Myb superfamily [T	92.71
PLN03212	249	Transcription repressor MYB5; Provisional	92.26
KOG4329	445	consensus DNA-binding protein [General function pr	92.06
PLN03091	459	hypothetical protein; Provisional	90.33
KOG4167	907	consensus Predicted DNA-binding protein, contains	90.11
KOG4468	782	consensus Polycomb-group transcriptional regulator	82.68
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	80.06

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=99.93  E-value=6e-26  Score=237.04  Aligned_cols=97  Identities=36%  Similarity=0.629  Sum_probs=89.2

Q ss_pred             CCCCCcccccCCccccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHH
Q 005589          550 FGDPATDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLT  629 (689)
Q Consensus       550 ~dd~E~~~I~~~t~lvNs~Sy~Kr~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~  629 (689)
                      .+.+|++...+..+++||+||+++.+..+|+.+|+++||+||+||||||+||++|||+|.|+|||.||++|||+||.||+
T Consensus       339 ~ee~E~veen~~ar~vts~t~g~~~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~nP~rIn  418 (507)
T COG5118         339 VEEMEVVEENPFARIVTSSTFGKKKGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKVNPERIN  418 (507)
T ss_pred             HHHHHHhhccchhheeecccccCCCCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhhCHHHHH
Confidence            45677888888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCC-CChhHHHHHH
Q 005589          630 EALTNRA-KDHSHFEQVI  646 (689)
Q Consensus       630 ~AL~~R~-~D~s~Fe~vI  646 (689)
                      .||+.+. +|+.+|..+.
T Consensus       419 ~aL~~kkp~d~~eY~k~~  436 (507)
T COG5118         419 EALNEKKPFDQVEYNKLR  436 (507)
T ss_pred             HHHhccCCCCHHHHhhHH
Confidence            9999775 5877766543

>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=99.91  E-value=5.5e-24  Score=231.24  Aligned_cols=238  Identities=26%  Similarity=0.382  Sum_probs=182.7

Q ss_pred             CCCCCcCCCCCCCccccccccccCCCCccchhcccCcchhhhhhcccCccCCCCCCCCCChhhHhhhhhhhhhhhcCCCC
Q 005589          407 NAVDEDEGDVGGNSAEKTSEKKRAPRKSKETVSENGKTVRKRKKANEASDTDKNPPKKFSHSTRRKRRIVNKELLQTPED  486 (689)
Q Consensus       407 n~vd~ee~n~d~~~Ve~~s~k~r~~~~SKk~~~k~~ktsRkRK~a~~d~ekte~PpKKFsh~sRrkrr~~dK~LLE~Pdd  486 (689)
                      +.+..+...|+++.+.+..+++-...+|++      .++++|+..+.-.+.+.--.+.+.|+.|+.+ .+.+..+..++.
T Consensus       244 ~~~~iek~~~~g~~~~~~~~~~~~t~ss~~------~~~~~r~~~~~n~~~sk~~k~~p~~~rr~~k-~lEke~~~~~~~  316 (584)
T KOG2009|consen  244 AVVLIEKDEREGNNAKYKRERETPTWSSKQ------ATRFKRSLIKPNKSFSKMEKEAPKESRRHTK-SLEKEARDEGDL  316 (584)
T ss_pred             hHHHHHHhhhccchhhHhhhccCCcchhhh------hcccchhhcccchhhhhhhhhhhhhhhHHHH-Hhhccchhhhhh
Confidence            347788888999999999999999999988      8888887655555544444555677778777 788888888887


Q ss_pred             CCCCCCCChHHHhhhhHHHHHhhhhhhccCCCCCCCCc-------cccccccccccccccccccccCC-CCCCCCCcccc
Q 005589          487 EIDPQKVPMKDLILLAEYKERLASKEAKATGTPLKNQS-------AEHSSREEDYHNEDETFASEQDN-GSFGDPATDRV  558 (689)
Q Consensus       487 EID~~~LpirDLilLae~rEr~a~Keak~Sgtss~NQs-------~~d~~~~~g~~~e~e~~~~Eq~~-~~~dd~E~~~I  558 (689)
                      .+.  .|+-..+-.+++++++++....+.++   ++|+       ....+|.-.+..+.-..  .... ..+...++..+
T Consensus       317 ~~~--s~~~~~~~~~~elke~~e~~~~k~~~---sd~s~~~~~~~~~~~~g~~~~~ee~~~~--Dr~~~~s~~veE~e~v  389 (584)
T KOG2009|consen  317 KNK--SLLYPKMFELAELKESLEVEARKDAE---SDRSASEILRAELENPGKRRRDEESMVV--DRHKNDSSVVEENEVV  389 (584)
T ss_pred             hhh--hccchhHHHHHHHHHHHHHHHhccCC---cchhhHHHHhhcccCCcceeeccchhhc--cccccccchhhhhhcc
Confidence            777  77788899999999999988877764   3332       22223333333332111  1122 23445666666


Q ss_pred             cCCc--cccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHHHHHhcCC
Q 005589          559 QPRV--HFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNRA  636 (689)
Q Consensus       559 ~~~t--~lvNs~Sy~Kr~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~~AL~~R~  636 (689)
                      +++.  +.+||+||+|+....+|+..||++||++|++||++|+||++|||+|+|+|||.||++||++||.+|..||+.+.
T Consensus       390 k~ts~~~~vn~~t~sk~~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~p~~l~~al~~kk  469 (584)
T KOG2009|consen  390 KSTSLARPVNYATYSKKLETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRNPLKLNTALRSKK  469 (584)
T ss_pred             cccccccccchhhccCccccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhccchhhhhHHhhcC
Confidence            6654  78999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             C-ChhHHH-----HHHHHHHHHHHHHHh
Q 005589          637 K-DHSHFE-----QVIEQLQQFAAQAAQ  658 (689)
Q Consensus       637 ~-D~s~Fe-----~vIEkLq~~aaqAee  658 (689)
                      + |...+.     .++..+.+...+|..
T Consensus       470 ~~~~d~~d~~y~~~v~~~~~e~v~~a~~  497 (584)
T KOG2009|consen  470 PLDGDAYDDKYDVKVVKKADEEVIKADD  497 (584)
T ss_pred             ccccccccchhhhhhhhhhHHHHHhccc
Confidence            5 655555     566677766666543

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.58  E-value=8.3e-08  Score=73.47  Aligned_cols=43  Identities=33%  Similarity=0.716  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHHHhcCC-HHHHHhhCC-CCCHHHHHHHhHH
Q 005589          577 VRWSKQETELFYEAIRQFGTD-LSMIQQLFP-GRTRQQVKLKYKK  619 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGTD-FsLIs~LFP-gRTRrQIK~KFkr  619 (689)
                      .+||.+|.++|.+++.+||++ |..|+..|| +||..||+.+|.+
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~   46 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQN   46 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHh
Confidence            589999999999999999999 999999999 9999999999975

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.34  E-value=1.4e-06  Score=62.93  Aligned_cols=44  Identities=27%  Similarity=0.649  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHHHhc-CCHHHHHhhCCCCCHHHHHHHhHHH
Q 005589          577 VRWSKQETELFYEAIRQFG-TDLSMIQQLFPGRTRQQVKLKYKKE  620 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fG-TDFsLIs~LFPgRTRrQIK~KFkrE  620 (689)
                      ..||.+|..+|..++.++| .+|..|+..||+||..+|+.+|..-
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~   46 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNL   46 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            5799999999999999999 9999999999999999999999864

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.22  E-value=3.4e-06  Score=60.37  Aligned_cols=42  Identities=31%  Similarity=0.763  Sum_probs=40.4

Q ss_pred             CCCHHHHHHHHHHHHHhc-CCHHHHHhhCCCCCHHHHHHHhHH
Q 005589          578 RWSKQETELFYEAIRQFG-TDLSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       578 RWSkEETekFYeALs~fG-TDFsLIs~LFPgRTRrQIK~KFkr  619 (689)
                      .||.+|..+|++++.++| .+|..|+..||+||..||+++|..
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~   43 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN   43 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHH
Confidence            599999999999999999 999999999999999999999975

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.52  E-value=0.0002  Score=56.45  Aligned_cols=41  Identities=29%  Similarity=0.677  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHH
Q 005589          579 WSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       579 WSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkr  619 (689)
                      ||++|.++.-++...+|.++..|+.+||+||..||+.+|..
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHH
Confidence            99999999999999999999999999988999999999998

...

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=95.72  E-value=0.03  Score=46.11  Aligned_cols=44  Identities=30%  Similarity=0.545  Sum_probs=37.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcC-CH---HHHHhhC-CCC-CHHHHHHHhH
Q 005589          575 PTVRWSKQETELFYEAIRQFGT-DL---SMIQQLF-PGR-TRQQVKLKYK  618 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGT-DF---sLIs~LF-PgR-TRrQIK~KFk  618 (689)
                      ++.+||.+|-.+|-+||..+|- |.   .-|..++ ..+ |+.||+.-+.
T Consensus         2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~Q   51 (57)
T TIGR01557         2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQ   51 (57)
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHH
Confidence            4678999999999999999998 88   8887754 456 9999997654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PLN03212 Transcription repressor MYB5; Provisional

Probab=95.27  E-value=0.035  Score=57.44  Aligned_cols=49  Identities=24%  Similarity=0.366  Sum_probs=44.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHh
Q 005589          574 TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEER  622 (689)
Q Consensus       574 ~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEER  622 (689)
                      .....||.+|-++-.+....||.-...|+++||+||-.|||+.|+.=.|
T Consensus        76 I~kgpWT~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~Lr  124 (249)
T PLN03212         76 VKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLR  124 (249)
T ss_pred             cccCCCChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence            3467999999999999999999999999999999999999999975433

>PLN03091 hypothetical protein; Provisional

Probab=94.70  E-value=0.064  Score=59.43  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=43.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHh
Q 005589          575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEER  622 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEER  622 (689)
                      +...||++|-++..+....||.-+..|+.+|||||..|||+.|+.=-|
T Consensus        66 kKgpWT~EED~lLLeL~k~~GnKWskIAk~LPGRTDnqIKNRWnslLK  113 (459)
T PLN03091         66 KRGTFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLK  113 (459)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCcchHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999975433

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=94.29  E-value=0.067  Score=59.52  Aligned_cols=44  Identities=27%  Similarity=0.481  Sum_probs=40.7

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhH
Q 005589          575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYK  618 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFk  618 (689)
                      ....|+.+|..+|-+|.++||++|.-|.+++|+|+-..|..-|-
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy  229 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYY  229 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHH
Confidence            46799999999999999999999999999999999999986653

>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=93.65  E-value=0.34  Score=55.33  Aligned_cols=80  Identities=16%  Similarity=0.223  Sum_probs=70.3

Q ss_pred             cccccCCccccccccccCCCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhhChHHHHHHHhc
Q 005589          555 TDRVQPRVHFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTN  634 (689)
Q Consensus       555 ~~~I~~~t~lvNs~Sy~Kr~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERkNP~rV~~AL~~  634 (689)
                      .+.|....+--|...|.+...+..|+...+-.||..+..-+++|++|.+.+|-+.|+.+| +|.+|.+.++..+..+|..
T Consensus       245 ~~~iek~~~~g~~~~~~~~~~~~t~ss~~~~~~~r~~~~~n~~~sk~~k~~p~~~rr~~k-~lEke~~~~~~~~~~s~~~  323 (584)
T KOG2009|consen  245 VVLIEKDEREGNNAKYKRERETPTWSSKQATRFKRSLIKPNKSFSKMEKEAPKESRRHTK-SLEKEARDEGDLKNKSLLY  323 (584)
T ss_pred             HHHHHHhhhccchhhHhhhccCCcchhhhhcccchhhcccchhhhhhhhhhhhhhhHHHH-Hhhccchhhhhhhhhhccc
Confidence            444555555667788887788999999999999999999999999999999999999999 9999999999999988865


Q ss_pred             C
Q 005589          635 R  635 (689)
Q Consensus       635 R  635 (689)
                      .
T Consensus       324 ~  324 (584)
T KOG2009|consen  324 P  324 (584)
T ss_pred             h
Confidence            3

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=92.71  E-value=0.26  Score=49.46  Aligned_cols=50  Identities=24%  Similarity=0.394  Sum_probs=44.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhHHHHhh
Q 005589          574 TPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEERE  623 (689)
Q Consensus       574 ~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFkrEERk  623 (689)
                      .+...||.+|...-+++=+.+|--.++|++++||||-..||+-++--.|+
T Consensus        60 ikrg~fT~eEe~~Ii~lH~~~GNrWs~IA~~LPGRTDNeIKN~Wnt~lkk  109 (238)
T KOG0048|consen   60 LKRGNFSDEEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNHWNTHLKK  109 (238)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHCcHHHHHHhhCCCcCHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999999999988655544

>PLN03212 Transcription repressor MYB5; Provisional

Probab=92.26  E-value=0.25  Score=51.40  Aligned_cols=45  Identities=16%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHHhcC-CHHHHHhhC-CCCCHHHHHHHhH
Q 005589          574 TPTVRWSKQETELFYEAIRQFGT-DLSMIQQLF-PGRTRQQVKLKYK  618 (689)
Q Consensus       574 ~k~~RWSkEETekFYeALs~fGT-DFsLIs~LF-PgRTRrQIK~KFk  618 (689)
                      .+..+|+++|-++..+++..+|+ +...|++.+ |+||.+|++..|.
T Consensus        23 lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~   69 (249)
T PLN03212         23 MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWM   69 (249)
T ss_pred             CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHH
Confidence            45678999999999999999996 799999987 6999999999887

>KOG4329 consensus DNA-binding protein [General function prediction only]

Probab=92.06  E-value=0.19  Score=54.99  Aligned_cols=44  Identities=23%  Similarity=0.403  Sum_probs=39.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHhcCCHHHHHhh-CCCCCHHHHHHHhH
Q 005589          575 PTVRWSKQETELFYEAIRQFGTDLSMIQQL-FPGRTRQQVKLKYK  618 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGTDFsLIs~L-FPgRTRrQIK~KFk  618 (689)
                      .-.-|+.+|...|-++|+.||-||.||++. .+.|+-.++-.-|-
T Consensus       276 ~l~~wsEeEcr~FEegl~~yGKDF~lIr~nkvrtRsvgElVeyYY  320 (445)
T KOG4329|consen  276 DLSGWSEEECRNFEEGLELYGKDFHLIRANKVRTRSVGELVEYYY  320 (445)
T ss_pred             ccccCCHHHHHHHHHHHHHhcccHHHHHhcccccchHHHHHHHHH
Confidence            346899999999999999999999999997 88999998876653

>PLN03091 hypothetical protein; Provisional

Probab=90.33  E-value=0.45  Score=53.04  Aligned_cols=79  Identities=16%  Similarity=0.339  Sum_probs=58.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhcC-CHHHHHhhC-CCCCHHHHHHHhHH-------------HHh-----------h
Q 005589          570 FMKKTPTVRWSKQETELFYEAIRQFGT-DLSMIQQLF-PGRTRQQVKLKYKK-------------EER-----------E  623 (689)
Q Consensus       570 y~Kr~k~~RWSkEETekFYeALs~fGT-DFsLIs~LF-PgRTRrQIK~KFkr-------------EER-----------k  623 (689)
                      |..+.+..+|+.+|=++..+++..||+ +...|++++ |+||.+|++..|.+             ||-           .
T Consensus         8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~Gn   87 (459)
T PLN03091          8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGN   87 (459)
T ss_pred             cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCc
Confidence            334556779999999999999999997 799999876 59999999998873             222           3


Q ss_pred             ChHHHHHHHhcCCCC--hhHHHHHHHH
Q 005589          624 HPLRLTEALTNRAKD--HSHFEQVIEQ  648 (689)
Q Consensus       624 NP~rV~~AL~~R~~D--~s~Fe~vIEk  648 (689)
                      ++..|-..|.+|...  -..|..+|++
T Consensus        88 KWskIAk~LPGRTDnqIKNRWnslLKK  114 (459)
T PLN03091         88 RWSQIAAQLPGRTDNEIKNLWNSCLKK  114 (459)
T ss_pred             chHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            556677777777642  2246666655

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=90.11  E-value=0.84  Score=53.66  Aligned_cols=46  Identities=22%  Similarity=0.417  Sum_probs=42.2

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHhcCCHHHHHhhCCCCCHHHHHHHhH
Q 005589          573 KTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYK  618 (689)
Q Consensus       573 r~k~~RWSkEETekFYeALs~fGTDFsLIs~LFPgRTRrQIK~KFk  618 (689)
                      -.....|+..|..+|-+||-++--||.+|++|++++|-+|+-.-|-
T Consensus       616 Y~gSd~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYY  661 (907)
T KOG4167|consen  616 YAGSDKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYY  661 (907)
T ss_pred             ecCcccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHH
Confidence            3567899999999999999999999999999999999999987664

>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]

Probab=82.68  E-value=1.3  Score=51.21  Aligned_cols=47  Identities=30%  Similarity=0.513  Sum_probs=35.1

Q ss_pred             CCCCCHHHHHHHHHHHHHhcCCHHHHHh-hCC---CCCHHHHHHHhHHHHh
Q 005589          576 TVRWSKQETELFYEAIRQFGTDLSMIQQ-LFP---GRTRQQVKLKYKKEER  622 (689)
Q Consensus       576 ~~RWSkEETekFYeALs~fGTDFsLIs~-LFP---gRTRrQIK~KFkrEER  622 (689)
                      ...|+..|-+-||.||++||-||+-|-. +..   ..||-|.|.||..--+
T Consensus        88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~  138 (782)
T KOG4468|consen   88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHY  138 (782)
T ss_pred             ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHH
Confidence            3589999999999999999999998722 232   3466677777655433

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=80.06  E-value=1.7  Score=49.17  Aligned_cols=42  Identities=31%  Similarity=0.599  Sum_probs=37.3

Q ss_pred             CCCCHHHHHHHHHHHHHhcCCHHHHHh-hCCCCCHHHHHHHhH
Q 005589          577 VRWSKQETELFYEAIRQFGTDLSMIQQ-LFPGRTRQQVKLKYK  618 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGTDFsLIs~-LFPgRTRrQIK~KFk  618 (689)
                      .-||..|..+|-+||..||-||.=|.+ ++|=++-+.|-.-|-
T Consensus       286 EEWSasEanLFEeALeKyGKDFndIrqdfLPWKSl~sIveyYY  328 (693)
T KOG3554|consen  286 EEWSASEANLFEEALEKYGKDFNDIRQDFLPWKSLTSIVEYYY  328 (693)
T ss_pred             hhccchhhHHHHHHHHHhcccHHHHHHhhcchHHHHHHHHHHH
Confidence            679999999999999999999999988 789988888866553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	689
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	4e-07
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	1e-06
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	2e-06
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	1e-04
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	2e-04
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	3e-04
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	8e-04

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 58.8 bits (142), Expect = 4e-11
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 563 HFFNYQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEER 622
           H  ++ S  +      W+++E     + + + G + S I ++   +T  Q K  Y   ++
Sbjct: 3   HHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKK 62

Query: 623 EHPL 626
              L
Sbjct: 63  RQNL 66

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 57.6 bits (138), Expect = 1e-08
 Identities = 114/714 (15%), Positives = 205/714 (28%), Gaps = 227/714 (31%)

Query: 67  HFKENESSENALHSEVTASDGCGDLLSSFQKAAGQNADVLSGLESLNDFQSQSSNGTEMP 126
           H  + E+ E+             D+LS F+ A   N D     + + D      +  E+ 
Sbjct: 5   HHMDFETGEHQYQ--------YKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEID 52

Query: 127 ALIVS-DYNGGEAVVFEGLSSDNNAAPGVCDAAQAETSADMFLTQDPISCGQAALTNNAG 185
            +I+S D   G   +F  L S            + E     F+        +  L  N  
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLS------------KQEEMVQKFV--------EEVLRINYK 92

Query: 186 GIPVDDARLEREVQQDGAFPDLNFLD--STSEEAVASGQRAAKYK-PRPQ----VRT--- 235
            +    + ++ E +Q    P +         +      Q  AKY   R Q    +R    
Sbjct: 93  FLM---SPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL 145

Query: 236 --ESEKFNI--------------SSVPHPDAVESVMHSPNAQF-VSSGSQFMSEGSIPAS 278
                K N+                V     V+  M      F ++  +          +
Sbjct: 146 ELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNC---------N 193

Query: 279 VPEDCFD-----YSSIDLDGTTPPDPTSS-EFPVNE---ELTNFAETSFTDAAASGDMQH 329
            PE   +        ID + T+  D +S+ +  ++    EL                ++ 
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-------------LKS 240

Query: 330 EDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVG-KLL---RQLRKGVVVPE 385
           + +                  VL      +++++A     +  K+L   R   K V    
Sbjct: 241 KPYE-------------NCLLVL----LNVQNAKAWNAFNLSCKILLTTRF--KQVT--- 278

Query: 386 LVDEPDNEARNDGSFSAEPPSNAVDEDEG-----DVGGNSAEKTSE--KKRAP------- 431
             D            S +  S  +  DE             +          P       
Sbjct: 279 --DFLSAATTTH--ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 432 ---RKSKETVSENGKTVR--KRKKANEASDTDKNPP--KK-------FSHSTRRKRRIVN 477
              R    T  +N K V   K     E+S     P   +K       F  S      I  
Sbjct: 335 ESIRDGLAT-WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH----IPT 389

Query: 478 K--ELLQTPEDEIDPQKVPMKDLILLAEYKERLASKEAK-----------ATGTPLKNQS 524
               L+     + D   V +  L     +K  L  K+ K                L+N+ 
Sbjct: 390 ILLSLIWFDVIKSDVMVV-VNKL-----HKYSLVEKQPKESTISIPSIYLELKVKLENEY 443

Query: 525 AEHSSREEDYHNEDETFASEQDNGSFGDPATDRVQPRVHFFNYQSF-MKKTPTVRWSKQE 583
           A H S  + Y N  +TF    D+     P  D+     +F+++    +K         + 
Sbjct: 444 ALHRSIVDHY-NIPKTF----DSDDLIPPYLDQ-----YFYSHIGHHLKNIE----HPER 489

Query: 584 TELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALTNR-------A 636
             LF    R    D   ++Q          K+++          +   L           
Sbjct: 490 MTLF----RMVFLDFRFLEQ----------KIRHDSTAWNASGSILNTLQQLKFYKPYIC 535

Query: 637 KDHSHFEQVIEQLQQFAAQAAQD---AKEDD---SASMIDED--LEELNPQYNR 682
            +   +E+++  +  F  +  ++   +K  D    A M +++   EE + Q  R
Sbjct: 536 DNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQR 589

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 1e-06
 Identities = 52/425 (12%), Positives = 113/425 (26%), Gaps = 113/425 (26%)

Query: 328 QHEDFPATTESQSAMGKETKASTVLSLSQRLIESSQAGKETEVGKLLRQLRKGVVVPELV 387
            H DF  T E Q           +LS+ +     +   K+ +   + + +     +  ++
Sbjct: 5   HHMDF-ETGEHQYQYKD------ILSVFEDAFVDNFDCKDVQ--DMPKSILSKEEIDHII 55

Query: 388 DEPDNEARNDGSFSA--EPPSNAVDEDEGDVGGNS----AEKTSEKKRAPRKSKETVSEN 441
              D  +     F          V +   +V   +          ++R P          
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS--------- 106

Query: 442 GKTVRKRKKANEASDTDKNPPKKFS--HSTRRKRRIVNKELLQTPEDEIDPQKVPMKDLI 499
                  +   E  D   N  + F+  + +R +  +  ++ L     E+ P     K+++
Sbjct: 107 ----MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL----ELRP----AKNVL 154

Query: 500 LLAEY------KERLASKEAKATGTPLKNQ------SAEHSSREED--------YHNEDE 539
           +          K  +A     +     K        + ++ +  E          +  D 
Sbjct: 155 I---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 540 TFASEQDNGSFGDPATDRVQPRVHFFNYQSFMKKTPTVR--------WSKQETELFYEAI 591
            + S  D+ S        +Q  +     +  +K  P            + +    F    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAEL-----RRLLKSKPYENCLLVLLNVQNAKAWNAF---- 262

Query: 592 RQFG------T-DLSMIQQLFPGRTRQQVKLKYKKEEREHPLRLTEALT----------- 633
                     T    +   L    T   + L    +     L   E  +           
Sbjct: 263 -NLSCKILLTTRFKQVTDFL-SAATTTHISL----DHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 634 ---NRAKDHS--HFEQVIEQLQQFAA--QAAQDAKEDDSASMIDEDLEELNPQYNR--Y- 683
                    +      + E ++   A     +    D   ++I+  L  L P   R  + 
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376

Query: 684 -ICVF 687
            + VF
Sbjct: 377 RLSVF 381

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 573 KTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK 619
              +V+W+ +E ELF + + +FG   + I +L   RT  QVK   ++
Sbjct: 6   SGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ 52

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 572 KKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHP 625
             +    W++QET L  EA+  +  D + + +    RT+ +  L + +   E P
Sbjct: 14  GASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDP 67

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 3/46 (6%)

Query: 579 WSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKY---KKEE 621
           W+  E E+F +   Q   +  +I      ++     L Y   KK E
Sbjct: 15  WTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKNE 60

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 46.0 bits (109), Expect = 2e-06
 Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 3/47 (6%)

Query: 579 WSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKY---KKEER 622
           WS+QE E F E   Q   +  +I      +T  +  L Y   KK E 
Sbjct: 46  WSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNEN 92

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 578 RWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK 619
            W+ QE     EA+   G  +   +      +T+++ +  Y K
Sbjct: 10  SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 52

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 572 KKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVK 614
           KKT    W+++E  + Y+A ++ G   + I +L PGRT   +K
Sbjct: 109 KKTS---WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIK 148

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 63

 Score = 38.6 bits (90), Expect = 3e-04
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 4/46 (8%)

Query: 578 RWSKQETELFYEAIRQFGTDLSMIQQ-LFPGRTRQQVKLKY---KK 619
            W++ E + F + +RQ+G +   I++ L P +   ++   Y   KK
Sbjct: 11  CWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYWKK 56

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score = 38.3 bits (90), Expect = 8e-04
 Identities = 8/43 (18%), Positives = 18/43 (41%), Gaps = 3/43 (6%)

Query: 572 KKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVK 614
           +  P   WS +E  L  +   ++G   + I +    R+   ++
Sbjct: 52  RTDP---WSPEEDMLLDQKYAEYGPKWNKISKFLKNRSDNNIR 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	689
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-11
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-11
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-08
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	1e-06
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	8e-06
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-05
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-05
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	2e-05
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	5e-05
d1irza_	64	a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis th	0.001
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	0.001
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	0.003

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 1e-11
 Identities = 12/61 (19%), Positives = 23/61 (37%)

Query: 567 YQSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPL 626
            + +  +     WS+QE E F E   Q   +  +I      +T  +  L Y   ++    
Sbjct: 8   MKVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKNENY 67

Query: 627 R 627
           +
Sbjct: 68  K 68

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 571 MKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEEREHPLR 627
           ++K    RW+ +E  L  +AIR++G D   I  +   ++  QVK  +    R   + 
Sbjct: 1   IQKCNA-RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRFNID 56

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 1e-08
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 576 TVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK 619
           +V+W+ +E ELF + + +FG   + I +L   RT  QVK   ++
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ 45

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 578 RWSKQETELFYEAIRQFGTDLSMIQQLF-PGRTRQQVKLKY---KKEER 622
            WS  E  LF EA+ ++G D + I+Q F P ++   +   Y   K  +R
Sbjct: 3   EWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMWKTTDR 51

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (96), Expect = 8e-06
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 573 KTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK 619
           KT    W+++E  + Y+A ++ G   + I +L PGRT   +K  +  
Sbjct: 1   KTS---WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNS 44

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 578 RWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK 619
           RW+++E E   + + Q GT D  +I    P RT  Q + +++K
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK 45

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 8/52 (15%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 572 KKTPTVRWSKQETELFYEAIRQFGTD----LSMIQQLFPGRTRQQVKLKYKK 619
            ++    W++ + +L   A++Q+          I +  P ++++    +YK 
Sbjct: 8   ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 59

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 579 WSKQETELFYEAIRQFGTD----LSMIQQLFPGRTRQQVKLKYKK 619
           WS +E + F  A+  +  D     + + +   GRT ++VK  Y+ 
Sbjct: 4   WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI 48

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 11/50 (22%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 571 MKKTPTVRWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK 619
           + K P   W+K+E +   + ++++G    S+I +   GR  +Q + ++  
Sbjct: 1   LIKGP---WTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN 47

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.7 bits (82), Expect = 0.001
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 572 KKTPTVRWSKQETELFYEAIRQFGTD---LSMIQQLF--PGRTRQQVKLKYKK 619
           +K P V W+ +    F  A+   G +      I  L      TR+ V    +K
Sbjct: 3   QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQK 55

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 10/50 (20%), Positives = 22/50 (44%), Gaps = 6/50 (12%)

Query: 572 KKTPTVRWSKQETELFYEAIRQFGT-DLSMIQQLFP--GRTRQQVKLKYK 618
           K+     W  +E +     +R++G  + S I   +    RT   +K +++
Sbjct: 1   KRQA---WLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWR 47

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.1 bits (78), Expect = 0.003
 Identities = 9/44 (20%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 578 RWSKQETELFYEAIRQFGT-DLSMIQQL--FPGRTRQQVKLKYK 618
           +W+ +E+E     ++++G  + + I +   F  RT   +K +++
Sbjct: 4   KWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR 47

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	689
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.61
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.56
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.43
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	97.76
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	97.71
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.63
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.6
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	97.45
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.37
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	97.28
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.28
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.14
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	97.03
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	96.85
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.1
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	95.0
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	94.8
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.92

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.5e-08  Score=71.03  Aligned_cols=56  Identities=21%  Similarity=0.378  Sum_probs=49.1

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             34447799999998999999999997169899898529999989999984999833
Q 005589          568 QSFMKKTPTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEERE  623 (689)
Q Consensus       568 ~SY~Kr~k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrEERk  623 (689)
                      ..|.++.....||.+|..+|++++.+||+||.+|+.+||+||+.||++.|.+-.|.
T Consensus         9 ~~~~~~~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk~   64 (68)
T d1xc5a1           9 KVYKDRQVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN   64 (68)
T ss_dssp             TTTTSTTTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTTT
T ss_pred             HHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             88736457989999999999999999887699999876997999999999998774

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.7e-08  Score=67.75  Aligned_cols=49  Identities=29%  Similarity=0.480  Sum_probs=45.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf             9999998999999999997169899898529999989999984999833
Q 005589          575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKEERE  623 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrEERk  623 (689)
                      .+.+||.+|..+|+++|..||.||.+|+.+||+||..||++.|.+..|+
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             8999899999999999999396099999784999999999999999966

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.7e-07  Score=64.12  Aligned_cols=45  Identities=33%  Similarity=0.549  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999999899999999999716989989852999998999998499
Q 005589          575 PTVRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkr  619 (689)
                      ++.+||.+|-.+|++++.+||.+|.+|+.+||+||..||++-|.+
T Consensus         1 ~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~   45 (65)
T d2cu7a1           1 YSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQ   45 (65)
T ss_dssp             CCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             999979999999999999865249999989299999999999999

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.6e-05  Score=50.01  Aligned_cols=43  Identities=30%  Similarity=0.541  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHH-HCCCCCHHHHHHHHHH
Q ss_conf             999989999999999971698998985-2999998999998499
Q 005589          577 VRWSKQETELFYEAIRQFGTDLSMIQQ-LFPGRTRQQVKLKYKK  619 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGTDFsLIsq-LFP~RTRkQIK~KFkr  619 (689)
                      ..||.+|..+|-+||++||.||.+|++ +.|+||-.||.+=|-.
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             98999999999999999762599999999499989999999999

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.71  E-value=4e-05  Score=48.75  Aligned_cols=44  Identities=27%  Similarity=0.491  Sum_probs=41.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHCCC----HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9999989999999999971698----9989852999998999998499
Q 005589          576 TVRWSKQETELFYEAIRQFGTD----LSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       576 ~~RWSkEETekFYeALs~fGTD----FsLIsqLFP~RTRkQIK~KFkr  619 (689)
                      +.+||.+|-.+|.+++.+||.+    +..|+.++|+||..||+..|+.
T Consensus         1 G~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           1 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             969899999999999999777883499999989599999999999999

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=7.1e-05  Score=47.17  Aligned_cols=46  Identities=17%  Similarity=0.444  Sum_probs=42.2

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC----HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999999989999999999971698----9989852999998999998499
Q 005589          574 TPTVRWSKQETELFYEAIRQFGTD----LSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       574 ~k~~RWSkEETekFYeALs~fGTD----FsLIsqLFP~RTRkQIK~KFkr  619 (689)
                      .....||.+|..+|.++|..||.+    ...|+.+||+||.+|++..|+.
T Consensus        10 ~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1          10 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             68989699999999999998088664599999988499999999999987

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.60  E-value=7.2e-05  Score=47.12  Aligned_cols=44  Identities=27%  Similarity=0.675  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             99998999999999997169899898529999989999984999
Q 005589          577 VRWSKQETELFYEAIRQFGTDLSMIQQLFPGRTRQQVKLKYKKE  620 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGTDFsLIsqLFP~RTRkQIK~KFkrE  620 (689)
                      ..||.+|-+++.+....+|+....|+.+||+||..|||+.|..=
T Consensus         2 ~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~   45 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNST   45 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             89999999999999999863899999686999999999999987

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.00021  Score=44.17  Aligned_cols=48  Identities=19%  Similarity=0.377  Sum_probs=42.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHHCC--CCCHHHHHHHHHHHHH
Q ss_conf             9999998999999999997169-8998985299--9998999998499983
Q 005589          575 PTVRWSKQETELFYEAIRQFGT-DLSMIQQLFP--GRTRQQVKLKYKKEER  622 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGT-DFsLIsqLFP--~RTRkQIK~KFkrEER  622 (689)
                      ++..||.+|.+++.+++..||+ ...+|+..||  +||..||+.+|..=.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             989989999999999999978998999874657899799999999999877

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00023  Score=43.89  Aligned_cols=43  Identities=33%  Similarity=0.631  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHHCC-CHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             99998999999999997169-89989852999998999998499
Q 005589          577 VRWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGT-DFsLIsqLFP~RTRkQIK~KFkr  619 (689)
                      .+||.+|-+++.+++..+|. ++..|+.+||+||..||+..|.+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~   45 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQK   45 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             79899999999999999788999999988779988999999984

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.0002  Score=44.30  Aligned_cols=42  Identities=21%  Similarity=0.404  Sum_probs=39.8

Q ss_pred             CCCHHHHHHHHHHHHHHCC-CHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             9998999999999997169-89989852999998999998499
Q 005589          578 RWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       578 RWSkEETekFYeALs~fGT-DFsLIsqLFP~RTRkQIK~KFkr  619 (689)
                      .||.+|-.+|-+++++||+ +...|+.++|+||.+|++..|.+
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~   45 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK   45 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHH
T ss_conf             9899999999999999887609999978699977999999997

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=0.00048  Score=41.81  Aligned_cols=48  Identities=21%  Similarity=0.492  Sum_probs=42.1

Q ss_pred             CCCCCCHHHHHHHHHHHHHHCC-CHHHHHHH--CCCCCHHHHHHHHHHHHH
Q ss_conf             9999998999999999997169-89989852--999998999998499983
Q 005589          575 PTVRWSKQETELFYEAIRQFGT-DLSMIQQL--FPGRTRQQVKLKYKKEER  622 (689)
Q Consensus       575 k~~RWSkEETekFYeALs~fGT-DFsLIsqL--FP~RTRkQIK~KFkrEER  622 (689)
                      +..+||.+|.+++-+++..||+ ....|+..  |++||..|||.+|..-.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             989989999999999999818971999886668989699999999999856

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.14  E-value=0.00059  Score=41.21  Aligned_cols=44  Identities=20%  Similarity=0.519  Sum_probs=41.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHCC-CHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999998999999999997169-89989852999998999998499
Q 005589          576 TVRWSKQETELFYEAIRQFGT-DLSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       576 ~~RWSkEETekFYeALs~fGT-DFsLIsqLFP~RTRkQIK~KFkr  619 (689)
                      ..+||.+|-++.-+++..||+ +...|++.||+||..|++..|.+
T Consensus         3 rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~   47 (52)
T d1gvda_           3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHN   47 (52)
T ss_dssp             CCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHH
T ss_conf             899899999999999999788979999999779988999999996

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.03  E-value=0.00048  Score=41.81  Aligned_cols=44  Identities=16%  Similarity=0.395  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCCC------HHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf             999989999999999971698------99898529999989999984999
Q 005589          577 VRWSKQETELFYEAIRQFGTD------LSMIQQLFPGRTRQQVKLKYKKE  620 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGTD------FsLIsqLFP~RTRkQIK~KFkrE  620 (689)
                      ..|+++|-++..+.++++|+.      ..+|+.++|+||.+||+..|+.=
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~   51 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVY   51 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             89899999999999999686767746899999786898788999999987

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.85  E-value=0.0014  Score=38.79  Aligned_cols=46  Identities=26%  Similarity=0.254  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHHHHCC-CHHHHHHH----CCCCCHHHHHHHHHHHHH
Q ss_conf             99998999999999997169-89989852----999998999998499983
Q 005589          577 VRWSKQETELFYEAIRQFGT-DLSMIQQL----FPGRTRQQVKLKYKKEER  622 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGT-DFsLIsqL----FP~RTRkQIK~KFkrEER  622 (689)
                      .+||.+|.+...+++..||+ ...+|.+.    |++||..|||.+|..-.+
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~   51 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   51 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             998999999999999997865599999998754269998999999999851

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.10  E-value=0.032  Score=29.96  Aligned_cols=46  Identities=22%  Similarity=0.446  Sum_probs=36.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCHH---H-HHHH-CCCCCHHHHHHHH
Q ss_conf             7799999998999999999997169899---8-9852-9999989999984
Q 005589          572 KKTPTVRWSKQETELFYEAIRQFGTDLS---M-IQQL-FPGRTRQQVKLKY  617 (689)
Q Consensus       572 Kr~k~~RWSkEETekFYeALs~fGTDFs---L-IsqL-FP~RTRkQIK~KF  617 (689)
                      .+.++.+|+.++-.+|..||.++|-|-.   - ++.| .|++|+.||+.-.
T Consensus         3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHl   53 (64)
T d1irza_           3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHL   53 (64)
T ss_dssp             CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCHHHHHHHH
T ss_conf             788899899999999999999958543536789987088888799999899

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.00  E-value=0.035  Score=29.77  Aligned_cols=49  Identities=16%  Similarity=0.389  Sum_probs=43.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHCCC---HHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             999999989999999999971698---9989852999998999998499983
Q 005589          574 TPTVRWSKQETELFYEAIRQFGTD---LSMIQQLFPGRTRQQVKLKYKKEER  622 (689)
Q Consensus       574 ~k~~RWSkEETekFYeALs~fGTD---FsLIsqLFP~RTRkQIK~KFkrEER  622 (689)
                      .....|+.+|-....+..+.+|+-   |..|++.+++||-.||++.|..=.|
T Consensus        31 ~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~   82 (95)
T d1ug2a_          31 EKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             CCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf             7057757888899999999839948799999998589999999999999999

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.80  E-value=0.03  Score=30.19  Aligned_cols=42  Identities=19%  Similarity=0.375  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHHCCC----HHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             999989999999999971698----9989852999998999998499
Q 005589          577 VRWSKQETELFYEAIRQFGTD----LSMIQQLFPGRTRQQVKLKYKK  619 (689)
Q Consensus       577 ~RWSkEETekFYeALs~fGTD----FsLIsqLFP~RTRkQIK~KFkr  619 (689)
                      ..||.+|..+|-+||..|..+    +..|+..+ +||-.||..+|+.
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~   47 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQ   47 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-CCCHHHHHHHHHH
T ss_conf             989999999999999887999717999999998-9799999999999

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.92  E-value=0.19  Score=24.97  Aligned_cols=41  Identities=24%  Similarity=0.455  Sum_probs=37.3

Q ss_pred             CCCHHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHH
Q ss_conf             999899999999999716-98998985299999899999849
Q 005589          578 RWSKQETELFYEAIRQFG-TDLSMIQQLFPGRTRQQVKLKYK  618 (689)
Q Consensus       578 RWSkEETekFYeALs~fG-TDFsLIsqLFP~RTRkQIK~KFk  618 (689)
                      .|+..|-..|-.|+..|| .|+..|+.-+.++|-.+|+.=.+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             987999999999999988755999999866999999999999