Citrus Sinensis ID: 005603

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------69
MLCACSGEQFKFEAEDAPQSPESLATRDFSASGFSSRATGDWDSKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccHHHHHHHcHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccc
ccEcccccccccccccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHcccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccc
mlcacsgeqfkfeaedapqspeslatrdfsasgfssratgdwdskvddiQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQgidivsltprmTRAVVERtrplrkhrskgekadsvpppglmsLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVEsglpngmpegfgedCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALvkpwnldpkkvASVQRDLAVTLLYggvearlppelkvwgpiapkdnVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLkkdqvsrgviqsTTSQKEHFLAEAYKFLGICYgnvarksisdtERVFFQKEALESLNCaflneredpeMMYYLGLEHAVQRNVEAAFDYAIMYsdtvagnsgRGWKLLALILSADQRLKDAQSIVDFsldeagsmdQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHsknfhktkyitseapsvknleiATWQDLATIYMKlgslpdaeictekaksiefyspgswhttgmLFEAQSQYKEALVSFSISlaiepdyipsIISTAEILMKLGRQSMPIARSFLMNAlrleptnhdawmNLGLISKMEGSLQQAADYFQAAYELklsapvqsfv
mlcacsgeqfkfeaedapqspeslatrdfsasgfssratgdwdskvDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQgidivsltprmtravvertrplrkhrskgekadsvpppgLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYggvearlppelkvwgpiapKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTkyitseapsvknlEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLsapvqsfv
MLCACSGEQFKFEAEDAPQSPESLATRDFSASGFSSRATGDWDSKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAillllilMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV
************************************************************ALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAV**************************SLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKL********
**CAC***********************F********************QVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTR********************MSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV
MLCACSGEQFKF**************************TGDWDSKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVER*****************PPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV
***********************L***********************DIQVDEAESTLKEALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTR*******************LMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAP*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLCACSGEQFKFEAEDAPQSPESLATRDFSASGFSSRATGDWDSKVDDIQVDEAESTLxxxxxxxxxxxxxxxxxxxxxRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query688 2.2.26 [Sep-21-2011]
Q86TV6843 Tetratricopeptide repeat yes no 0.610 0.498 0.245 9e-21
Q8BGB2858 Tetratricopeptide repeat no no 0.609 0.488 0.232 5e-17
Q9ULT0858 Tetratricopeptide repeat no no 0.610 0.489 0.232 2e-16
Q7K4B6 926 Transmembrane and TPR rep no no 0.215 0.159 0.234 3e-06
Q9M8Y0 977 Probable UDP-N-acetylgluc no no 0.188 0.133 0.272 5e-06
Q57711338 TPR repeat-containing pro yes no 0.181 0.369 0.283 7e-06
>sp|Q86TV6|TTC7B_HUMAN Tetratricopeptide repeat protein 7B OS=Homo sapiens GN=TTC7B PE=1 SV=3 Back     alignment and function desciption
 Score =  102 bits (255), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 129/526 (24%), Positives = 222/526 (42%), Gaps = 106/526 (20%)

Query: 262 IAPKDNVEEAILLLLILMEKVASKE----------------MEWDAEIMDHLTYALSVTG 305
             P++N EEA+LLLLI  E +A+++                ++  + + D LT AL   G
Sbjct: 319 FCPQENTEEALLLLLI-SESMANRDAVLSRIPEHKSDRLISLQSASVVYDLLTIALGRRG 377

Query: 306 QFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKK--------------- 350
           Q+E+L+E +E+A+   +     WY  AL   AAG++  A+ +LK+               
Sbjct: 378 QYEMLSECLERAMKFAFEEFHLWYQFALSLMAAGKSARAVKVLKECIRLKPDDATIPLLA 437

Query: 351 --------------DQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKSISDTERVFF 396
                         ++ ++ V+       E F A+ Y  LG+ Y   A  +     +   
Sbjct: 438 AKLCMGSLHWLEEAEKFAKTVVDVGEKTSE-FKAKGYLALGLTYSLQATDASLRGMQEVL 496

Query: 397 QKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLL 456
           Q++AL +   A      D +  +YL L+ A+ R +  A  Y +  +  + G+      LL
Sbjct: 497 QRKALLAFQRAHSLSPTDHQAAFYLALQLAISRQIPEALGY-VRQALQLQGDDANSLHLL 555

Query: 457 ALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAM- 515
           AL+LSA +   DA +I+D +L E    +   LL  K  LQ     P +A+ T + +L + 
Sbjct: 556 ALLLSAQKHYHDALNIIDMALSEYP--ENFILLFSKVKLQSLCRGPDEALLTCKHMLQIW 613

Query: 516 ----------------------IQAQRELH-----------SKNFHKTKYITS------- 535
                                 I  +R+L+           + + H T    S       
Sbjct: 614 KSCYNLTNPSDSGRGSSLLDRTIADRRQLNTITLPDFSDPETGSVHATSVAASRVEQALS 673

Query: 536 ------EAPSVKNLEIATWQDLATI-------YMKLGSLPDAEICTEKAKSIEFYSPGSW 582
                 ++ + K   +  W  LA I       Y+ +G   +A  CT++A ++   S    
Sbjct: 674 EVASSLQSSAPKQGPLHPWMTLAQIWLHAAEVYIGIGKPAEATACTQEAANLFPMSHNVL 733

Query: 583 HTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNAL 642
           +  G + E +    EA   +  +LAI P ++ S+   A IL +LGR S+  A   L +A+
Sbjct: 734 YMRGQIAELRGSMDEARRWYEEALAISPTHVKSMQRLALILHQLGRYSL--AEKILRDAV 791

Query: 643 RLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV 688
           ++  T H+ W  LG + + +G+   A + F  A EL+ S+P   F 
Sbjct: 792 QVNSTAHEVWNGLGEVLQAQGNDAAATECFLTALELEASSPAVPFT 837

Homo sapiens (taxid: 9606)
>sp|Q8BGB2|TTC7A_MOUSE Tetratricopeptide repeat protein 7A OS=Mus musculus GN=Ttc7a PE=1 SV=1 Back     alignment and function description
>sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Homo sapiens GN=TTC7A PE=1 SV=3 Back     alignment and function description
>sp|Q7K4B6|TMTC3_DROME Transmembrane and TPR repeat-containing protein CG4050 OS=Drosophila melanogaster GN=CG4050 PE=2 SV=1 Back     alignment and function description
>sp|Q9M8Y0|SEC_ARATH Probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC OS=Arabidopsis thaliana GN=SEC PE=2 SV=1 Back     alignment and function description
>sp|Q57711|Y941_METJA TPR repeat-containing protein MJ0941 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0941 PE=4 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query688
225458840705 PREDICTED: tetratricopeptide repeat prot 0.976 0.953 0.704 0.0
224129856714 predicted protein [Populus trichocarpa] 0.989 0.953 0.662 0.0
147785333 814 hypothetical protein VITISV_013944 [Viti 0.954 0.807 0.680 0.0
224067204708 predicted protein [Populus trichocarpa] 0.978 0.950 0.664 0.0
356509775715 PREDICTED: tetratricopeptide repeat prot 0.985 0.948 0.668 0.0
356518132715 PREDICTED: tetratricopeptide repeat prot 0.985 0.948 0.672 0.0
449450285717 PREDICTED: tetratricopeptide repeat prot 0.991 0.951 0.665 0.0
356554004710 PREDICTED: uncharacterized protein LOC10 0.982 0.952 0.65 0.0
356564121711 PREDICTED: tetratricopeptide repeat prot 0.982 0.950 0.651 0.0
255538058651 calmodulin binding protein, putative [Ri 0.898 0.949 0.621 0.0
>gi|225458840|ref|XP_002285329.1| PREDICTED: tetratricopeptide repeat protein 7A-like [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1013 bits (2619), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/721 (70%), Positives = 582/721 (80%), Gaps = 49/721 (6%)

Query: 1   MLCACSGEQFKFEAEDAPQSPESLATRDFSASGFSSRATGDWDSKVDDIQVDEAESTLKE 60
           MLCACSGEQFKFE  DAP+SPESLATRDFSASG SSR TGDW+SK +D QVDEAESTL++
Sbjct: 1   MLCACSGEQFKFE--DAPRSPESLATRDFSASGLSSR-TGDWESKFEDTQVDEAESTLRD 57

Query: 61  ALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSKG 120
           ALSLNYEEARALLGRLEYQRGN+DAA QVF GIDI  LTPRMTRA+VERT   RK R+KG
Sbjct: 58  ALSLNYEEARALLGRLEYQRGNFDAAFQVFHGIDIRGLTPRMTRAIVERTWQ-RKPRTKG 116

Query: 121 EKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGMP 180
           +   +      MS+HS+SLLLEAILLKAKSL+ELG   EAAKECKIILD VES LPNGMP
Sbjct: 117 DIVSTQE----MSMHSVSLLLEAILLKAKSLDELGRTGEAAKECKIILDTVESALPNGMP 172

Query: 181 EGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLA 240
           EG GEDCKLQEMFHKALELLP LW KAG L+E+I AYR+ALV+PWNLDP+++ASVQ+DLA
Sbjct: 173 EGIGEDCKLQEMFHKALELLPKLWTKAGCLDESIAAYRQALVRPWNLDPRRLASVQKDLA 232

Query: 241 VTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYA 300
             LLYGGVE  LPP+L+VWG   PK+N+EEAILLL ILM KVAS+E++WD EIMDHL YA
Sbjct: 233 AILLYGGVETSLPPQLQVWGATTPKNNIEEAILLLFILMRKVASREIDWDPEIMDHLAYA 292

Query: 301 LSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKD--------- 351
           L+++G+FE LAEYVEQALPG+YNRAERWY LALCYSAAGQNEAALNLLKK          
Sbjct: 293 LTISGRFEFLAEYVEQALPGVYNRAERWYFLALCYSAAGQNEAALNLLKKVSGCSEAKHK 352

Query: 352 ------------------------QVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVARKS 387
                                     +R VI S+  Q +HF+ E +KFLGICYGN AR  
Sbjct: 353 PHLPSFLLGAKLCSQDPKHAHEGINFARKVI-SSHDQTKHFMGETHKFLGICYGNAARAC 411

Query: 388 ISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAG 447
           + D+ERV  Q ++L SLN A L   +DPE+++ L LE+AVQRN++AAF  AIMYSD VAG
Sbjct: 412 VLDSERVALQTDSLNSLNQASLIGHKDPELIFSLALENAVQRNLDAAFSNAIMYSDMVAG 471

Query: 448 NSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIG 507
           +SGRGWKLLAL++SA+QR KDA++IVD +LDEAG +DQLELLRLKAVLQIAQEQPKQAI 
Sbjct: 472 SSGRGWKLLALVVSAEQRFKDAETIVDLALDEAGRIDQLELLRLKAVLQIAQEQPKQAIE 531

Query: 508 TYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEIC 567
           TYRILLA+IQAQRE+ +  FH      SE  S +NLE  TWQDLA IY KLG   DAEIC
Sbjct: 532 TYRILLALIQAQREVQANKFH------SEV-SERNLETQTWQDLANIYTKLGLWSDAEIC 584

Query: 568 TEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLG 627
            +KAKSIEFYS  SWH TG+  EAQS YKEALVSFS+SL+IEPDY+PSI+STAE+LMK G
Sbjct: 585 LDKAKSIEFYSSRSWHKTGISLEAQSLYKEALVSFSVSLSIEPDYVPSIVSTAEVLMKFG 644

Query: 628 RQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSF 687
           + S+PIARSFLMNALRLEPTNH+AW+NLGL+SKMEGSLQQAADYFQAAYELKLSAP+QSF
Sbjct: 645 KPSLPIARSFLMNALRLEPTNHEAWLNLGLVSKMEGSLQQAADYFQAAYELKLSAPIQSF 704

Query: 688 V 688
           V
Sbjct: 705 V 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224129856|ref|XP_002320688.1| predicted protein [Populus trichocarpa] gi|222861461|gb|EEE99003.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147785333|emb|CAN72853.1| hypothetical protein VITISV_013944 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224067204|ref|XP_002302407.1| predicted protein [Populus trichocarpa] gi|222844133|gb|EEE81680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356509775|ref|XP_003523621.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Glycine max] Back     alignment and taxonomy information
>gi|356518132|ref|XP_003527736.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Glycine max] Back     alignment and taxonomy information
>gi|449450285|ref|XP_004142894.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Cucumis sativus] gi|449482716|ref|XP_004156382.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356554004|ref|XP_003545340.1| PREDICTED: uncharacterized protein LOC100799086 [Glycine max] Back     alignment and taxonomy information
>gi|356564121|ref|XP_003550305.1| PREDICTED: tetratricopeptide repeat protein 7B-like [Glycine max] Back     alignment and taxonomy information
>gi|255538058|ref|XP_002510094.1| calmodulin binding protein, putative [Ricinus communis] gi|223550795|gb|EEF52281.1| calmodulin binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query688
TAIR|locus:2016029694 NPGR1 "no pollen germination r 0.479 0.475 0.66 8.4e-210
TAIR|locus:2139860739 NPGR2 "AT4G28600" [Arabidopsis 0.502 0.468 0.457 2.6e-132
TAIR|locus:2053707704 NPG1 "no pollen germination 1" 0.476 0.465 0.458 6.1e-131
UNIPROTKB|F1PM89760 TTC7A "Uncharacterized protein 0.498 0.451 0.230 2.2e-16
UNIPROTKB|Q9ULT0858 TTC7A "Tetratricopeptide repea 0.498 0.399 0.222 1.6e-15
FB|FBgn0021847861 l(2)k14710 "lethal (2) k14710" 0.271 0.217 0.233 1.1e-14
UNIPROTKB|F5H4E1504 TTC7A "Tetratricopeptide repea 0.498 0.680 0.222 1.4e-13
RGD|1306211260 Ttc7a "tetratricopeptide repea 0.325 0.861 0.262 3e-12
MGI|MGI:1920999858 Ttc7 "tetratricopeptide repeat 0.549 0.440 0.245 2.6e-11
UNIPROTKB|E1BDL2858 TTC7A "Uncharacterized protein 0.414 0.332 0.226 1.1e-10
TAIR|locus:2016029 NPGR1 "no pollen germination related 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1133 (403.9 bits), Expect = 8.4e-210, Sum P(2) = 8.4e-210
 Identities = 231/350 (66%), Positives = 275/350 (78%)

Query:     1 MLCACSGEQFKFEAEDAPQSPESLATRDFSASGFSSR-ATGDWDSKVDDIQVDEAESTLK 59
             MLCACSGEQF+FE  D P SPESLATRDFSASG SSR   GDWDSK++DIQVDEAESTLK
Sbjct:     1 MLCACSGEQFRFE--DQPGSPESLATRDFSASGLSSRNGGGDWDSKLEDIQVDEAESTLK 58

Query:    60 EALSLNYEEARALLGRLEYQRGNYDAALQVFQGIDIVSLTPRMTRAVVERTRPLRKHRSK 119
             EALSLNYEEARALLGRLEYQRGN+DAALQVF+GIDI  LTPR+ +A+VE+T P  K RSK
Sbjct:    59 EALSLNYEEARALLGRLEYQRGNFDAALQVFKGIDIKVLTPRIIKAIVEKTLPC-KPRSK 117

Query:   120 GEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEAAKECKIILDIVESGLPNGM 179
                   + PP  MS+HS+SLLLEAILLKA+SLEELG  KEAA+ECKIILD+VE+ LP+GM
Sbjct:   118 AV----IVPPTTMSMHSVSLLLEAILLKARSLEELGSYKEAAEECKIILDVVENALPSGM 173

Query:   180 PEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDL 239
             P+G     KLQ++F KALELLP LW KAG   E I +YRRAL +PWNLDP+++A  Q+ L
Sbjct:   174 PDGISGFAKLQDIFQKALELLPLLWKKAGNHHETIASYRRALSRPWNLDPQRLAVTQKSL 233

Query:   240 AVTLLYGGVEARLPPELKVWGPIAPKDNVEEAXXXXXXXMEKVASKEMEWDAEIMDHLTY 299
             A+ LLYG VEA             PKDN+EEA       ++K+   +++WD E+MDHLTY
Sbjct:   234 ALVLLYGSVEA------------CPKDNIEEAIVLLMLLVKKMVVGDIQWDPELMDHLTY 281

Query:   300 ALSVTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLK 349
             ALS+TGQFE+LA Y+EQ LPG+Y R ERWY+L+LCYSAAG ++AA+NLLK
Sbjct:   282 ALSMTGQFEVLANYLEQTLPGVYTRGERWYLLSLCYSAAGIDKAAINLLK 331
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005516 "calmodulin binding" evidence=ISS;TAS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2139860 NPGR2 "AT4G28600" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2053707 NPG1 "no pollen germination 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1PM89 TTC7A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9ULT0 TTC7A "Tetratricopeptide repeat protein 7A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0021847 l(2)k14710 "lethal (2) k14710" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F5H4E1 TTC7A "Tetratricopeptide repeat protein 7A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306211 Ttc7a "tetratricopeptide repeat domain 7A" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:1920999 Ttc7 "tetratricopeptide repeat domain 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1BDL2 TTC7A "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00014960001
SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (686 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query688
cd00189100 cd00189, TPR, Tetratricopeptide repeat domain; typ 2e-08
TIGR02917 899 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system 2e-04
>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here Back     alignment and domain information 
 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 586 GMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLE 645
           G L+     Y EAL  +  +L ++PD   +  + A    KLG+     A      AL L+
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEE--ALEDYEKALELD 64

Query: 646 PTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679
           P N  A+ NLGL     G  ++A + ++ A EL 
Sbjct: 65  PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98

Length = 100
>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 688
KOG4162799 consensus Predicted calmodulin-binding protein [Si 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
KOG4626 966 consensus O-linked N-acetylglucosamine transferase 100.0
TIGR02917899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
TIGR02917 899 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
PRK11447 1157 cellulose synthase subunit BcsC; Provisional 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
TIGR00990615 3a0801s09 mitochondrial precursor proteins import 100.0
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 100.0
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 100.0
KOG2002 1018 consensus TPR-containing nuclear phosphoprotein th 100.0
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 100.0
PRK09782 987 bacteriophage N4 receptor, outer membrane subunit; 100.0
PRK15174 656 Vi polysaccharide export protein VexE; Provisional 100.0
KOG0547606 consensus Translocase of outer mitochondrial membr 99.97
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.97
PRK10049 765 pgaA outer membrane protein PgaA; Provisional 99.96
KOG0547606 consensus Translocase of outer mitochondrial membr 99.95
KOG1126638 consensus DNA-binding cell division cycle control 99.95
KOG2003 840 consensus TPR repeat-containing protein [General f 99.95
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.94
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.94
PRK11788389 tetratricopeptide repeat protein; Provisional 99.94
KOG1126638 consensus DNA-binding cell division cycle control 99.94
KOG2003 840 consensus TPR repeat-containing protein [General f 99.94
KOG1155559 consensus Anaphase-promoting complex (APC), Cdc23 99.94
PLN03077 857 Protein ECB2; Provisional 99.94
PLN03077 857 Protein ECB2; Provisional 99.94
PRK14574 822 hmsH outer membrane protein; Provisional 99.94
KOG1173611 consensus Anaphase-promoting complex (APC), Cdc16 99.93
PLN03081697 pentatricopeptide (PPR) repeat-containing protein; 99.93
PRK11788389 tetratricopeptide repeat protein; Provisional 99.93
KOG2076895 consensus RNA polymerase III transcription factor 99.93
KOG0495 913 consensus HAT repeat protein [RNA processing and m 99.92
PRK14574 822 hmsH outer membrane protein; Provisional 99.92
PLN03081 697 pentatricopeptide (PPR) repeat-containing protein; 99.92
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.92
KOG0624504 consensus dsRNA-activated protein kinase inhibitor 99.92
PLN03218 1060 maturation of RBCL 1; Provisional 99.91
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.9
PLN03218 1060 maturation of RBCL 1; Provisional 99.9
KOG0495913 consensus HAT repeat protein [RNA processing and m 99.9
KOG0624 504 consensus dsRNA-activated protein kinase inhibitor 99.9
KOG4162799 consensus Predicted calmodulin-binding protein [Si 99.89
KOG2076 895 consensus RNA polymerase III transcription factor 99.89
KOG0548539 consensus Molecular co-chaperone STI1 [Posttransla 99.89
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.87
KOG1129478 consensus TPR repeat-containing protein [General f 99.87
PF13429280 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 99.87
PRK12370553 invasion protein regulator; Provisional 99.86
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.86
KOG1174564 consensus Anaphase-promoting complex (APC), subuni 99.84
KOG1129478 consensus TPR repeat-containing protein [General f 99.84
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.84
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.83
KOG1127 1238 consensus TPR repeat-containing protein [RNA proce 99.83
TIGR00540409 hemY_coli hemY protein. This is an uncharacterized 99.83
KOG1125579 consensus TPR repeat-containing protein [General f 99.82
PRK12370553 invasion protein regulator; Provisional 99.82
KOG1125579 consensus TPR repeat-containing protein [General f 99.82
PRK11189296 lipoprotein NlpI; Provisional 99.81
KOG1915677 consensus Cell cycle control protein (crooked neck 99.81
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.81
PRK11189296 lipoprotein NlpI; Provisional 99.8
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.8
PRK10747398 putative protoheme IX biogenesis protein; Provisio 99.8
TIGR02521234 type_IV_pilW type IV pilus biogenesis/stability pr 99.8
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.79
COG3063250 PilF Tfp pilus assembly protein PilF [Cell motilit 99.79
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.78
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 99.78
PLN02789320 farnesyltranstransferase 99.77
KOG0550486 consensus Molecular chaperone (DnaJ superfamily) [ 99.77
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.77
KOG0550 486 consensus Molecular chaperone (DnaJ superfamily) [ 99.76
KOG1156 700 consensus N-terminal acetyltransferase [Chromatin 99.76
PLN02789320 farnesyltranstransferase 99.75
KOG1840508 consensus Kinesin light chain [Cytoskeleton] 99.74
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.71
KOG2376652 consensus Signal recognition particle, subunit Srp 99.71
KOG1915 677 consensus Cell cycle control protein (crooked neck 99.7
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.7
KOG3785557 consensus Uncharacterized conserved protein [Funct 99.68
KOG2376 652 consensus Signal recognition particle, subunit Srp 99.67
PF12569517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.65
cd05804355 StaR_like StaR_like; a well-conserved protein foun 99.65
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.62
PRK15359144 type III secretion system chaperone protein SscB; 99.58
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.58
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.57
TIGR03302235 OM_YfiO outer membrane assembly lipoprotein YfiO. 99.57
PRK15359144 type III secretion system chaperone protein SscB; 99.57
PRK04841 903 transcriptional regulator MalT; Provisional 99.55
PRK10370198 formate-dependent nitrite reductase complex subuni 99.55
PF12569 517 NARP1: NMDA receptor-regulated protein 1 ; InterPr 99.53
KOG1128 777 consensus Uncharacterized conserved protein, conta 99.53
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.52
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.51
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.51
KOG3060289 consensus Uncharacterized conserved protein [Funct 99.49
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.49
KOG1130 639 consensus Predicted G-alpha GTPase interaction pro 99.48
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.47
PRK04841903 transcriptional regulator MalT; Provisional 99.47
PRK14720 906 transcript cleavage factor/unknown domain fusion p 99.46
COG3071400 HemY Uncharacterized enzyme of heme biosynthesis [ 99.46
KOG4340459 consensus Uncharacterized conserved protein [Funct 99.45
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.45
PRK10370198 formate-dependent nitrite reductase complex subuni 99.45
KOG1128777 consensus Uncharacterized conserved protein, conta 99.44
COG5010257 TadD Flp pilus assembly protein TadD, contains TPR 99.43
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.43
KOG2047 835 consensus mRNA splicing factor [RNA processing and 99.43
PRK15179 694 Vi polysaccharide biosynthesis protein TviE; Provi 99.4
KOG0553304 consensus TPR repeat-containing protein [General f 99.39
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.35
PF04733290 Coatomer_E: Coatomer epsilon subunit; InterPro: IP 99.34
TIGR02552135 LcrH_SycD type III secretion low calcium response 99.33
KOG0553 304 consensus TPR repeat-containing protein [General f 99.31
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.31
PRK15363157 pathogenicity island 2 chaperone protein SscA; Pro 99.27
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.21
COG4783484 Putative Zn-dependent protease, contains TPR repea 99.21
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.14
COG4235287 Cytochrome c biogenesis factor [Posttranslational 99.11
KOG1941 518 consensus Acetylcholine receptor-associated protei 99.08
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.08
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 99.06
PLN03088 356 SGT1, suppressor of G2 allele of SKP1; Provisional 99.06
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.06
PF13525203 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M 99.05
KOG36171416 consensus WD40 and TPR repeat-containing protein [ 99.05
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 99.02
TIGR02795119 tol_pal_ybgF tol-pal system protein YbgF. Members 99.0
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 99.0
PRK02603172 photosystem I assembly protein Ycf3; Provisional 99.0
PRK10866243 outer membrane biogenesis protein BamD; Provisiona 99.0
cd00189100 TPR Tetratricopeptide repeat domain; typically con 99.0
KOG1941 518 consensus Acetylcholine receptor-associated protei 98.98
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.97
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.97
KOG10701710 consensus rRNA processing protein Rrp5 [RNA proces 98.96
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.96
CHL00033168 ycf3 photosystem I assembly protein Ycf3 98.95
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.94
PF1341469 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A 98.94
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.93
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.92
cd00189100 TPR Tetratricopeptide repeat domain; typically con 98.92
KOG3617 1416 consensus WD40 and TPR repeat-containing protein [ 98.91
KOG3081299 consensus Vesicle coat complex COPI, epsilon subun 98.91
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.89
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.89
PF09976145 TPR_21: Tetratricopeptide repeat; InterPro: IPR018 98.89
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.89
COG0457291 NrfG FOG: TPR repeat [General function prediction 98.88
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.86
PF1343265 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL 98.84
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.83
PRK11906458 transcriptional regulator; Provisional 98.83
PRK11906458 transcriptional regulator; Provisional 98.82
KOG0543397 consensus FKBP-type peptidyl-prolyl cis-trans isom 98.82
COG4235287 Cytochrome c biogenesis factor [Posttranslational 98.82
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.81
PF1289584 Apc3: Anaphase-promoting complex, cyclosome, subun 98.8
KOG2053 932 consensus Mitochondrial inheritance and actin cyto 98.8
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 98.79
PF14938282 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 98.79
PRK15331165 chaperone protein SicA; Provisional 98.79
PRK15331165 chaperone protein SicA; Provisional 98.79
COG3898 531 Uncharacterized membrane-bound protein [Function u 98.77
KOG4648 536 consensus Uncharacterized conserved protein, conta 98.77
PRK10803263 tol-pal system protein YbgF; Provisional 98.76
PRK10153517 DNA-binding transcriptional activator CadC; Provis 98.73
KOG2471696 consensus TPR repeat-containing protein [General f 98.72
PRK10803263 tol-pal system protein YbgF; Provisional 98.71
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.7
COG4785297 NlpI Lipoprotein NlpI, contains TPR repeats [Gener 98.67
COG3898531 Uncharacterized membrane-bound protein [Function u 98.66
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.65
PF12688120 TPR_5: Tetratrico peptide repeat 98.64
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.62
COG4700251 Uncharacterized protein conserved in bacteria cont 98.62
PF09295395 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter 98.6
PF12688120 TPR_5: Tetratrico peptide repeat 98.59
KOG2300 629 consensus Uncharacterized conserved protein [Funct 98.55
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.54
COG4700251 Uncharacterized protein conserved in bacteria cont 98.54
PF1337173 TPR_9: Tetratricopeptide repeat 98.54
COG4105254 ComL DNA uptake lipoprotein [General function pred 98.52
KOG4648 536 consensus Uncharacterized conserved protein, conta 98.52
KOG4234271 consensus TPR repeat-containing protein [General f 98.5
PF1455968 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN 98.48
PF13512142 TPR_18: Tetratricopeptide repeat 98.45
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.44
KOG2300629 consensus Uncharacterized conserved protein [Funct 98.44
PF13512142 TPR_18: Tetratricopeptide repeat 98.43
COG1729262 Uncharacterized protein conserved in bacteria [Fun 98.43
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.42
PF1337173 TPR_9: Tetratricopeptide repeat 98.4
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.4
KOG3616 1636 consensus Selective LIM binding factor [Transcript 98.35
KOG2796366 consensus Uncharacterized conserved protein [Funct 98.35
KOG4234271 consensus TPR repeat-containing protein [General f 98.32
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.31
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.23
PF06552186 TOM20_plant: Plant specific mitochondrial import r 98.23
PLN03098 453 LPA1 LOW PSII ACCUMULATION1; Provisional 98.22
PF1342478 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 98.21
KOG4555175 consensus TPR repeat-containing protein [Function 98.2
KOG4555175 consensus TPR repeat-containing protein [Function 98.18
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 98.13
COG5107 660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 98.09
KOG4507 886 consensus Uncharacterized conserved protein, conta 98.08
KOG1586288 consensus Protein required for fusion of vesicles 98.04
KOG1586288 consensus Protein required for fusion of vesicles 98.03
KOG4642 284 consensus Chaperone-dependent E3 ubiquitin protein 98.02
KOG2471 696 consensus TPR repeat-containing protein [General f 98.02
KOG4642 284 consensus Chaperone-dependent E3 ubiquitin protein 98.01
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 98.01
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.99
PF1342844 TPR_14: Tetratricopeptide repeat 97.94
PF05843 280 Suf: Suppressor of forked protein (Suf); InterPro: 97.93
KOG2610 491 consensus Uncharacterized conserved protein [Funct 97.93
PF1343134 TPR_17: Tetratricopeptide repeat 97.92
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.91
KOG1914 656 consensus mRNA cleavage and polyadenylation factor 97.9
KOG1258 577 consensus mRNA processing protein [RNA processing 97.9
PF1342844 TPR_14: Tetratricopeptide repeat 97.9
KOG2610 491 consensus Uncharacterized conserved protein [Funct 97.89
PF10345 608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.89
KOG1585308 consensus Protein required for fusion of vesicles 97.88
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.85
PF05843280 Suf: Suppressor of forked protein (Suf); InterPro: 97.82
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.81
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.81
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.81
KOG0985 1666 consensus Vesicle coat protein clathrin, heavy cha 97.8
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 97.79
PF07079549 DUF1347: Protein of unknown function (DUF1347); In 97.79
KOG4507886 consensus Uncharacterized conserved protein, conta 97.79
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.78
KOG1585308 consensus Protein required for fusion of vesicles 97.77
PF02259352 FAT: FAT domain; InterPro: IPR003151 The FAT domai 97.76
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.72
PF1343134 TPR_17: Tetratricopeptide repeat 97.72
COG2909 894 MalT ATP-dependent transcriptional regulator [Tran 97.71
PF04184 539 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for 97.69
PF13281374 DUF4071: Domain of unknown function (DUF4071) 97.57
KOG0545329 consensus Aryl-hydrocarbon receptor-interacting pr 97.54
KOG1550552 consensus Extracellular protein SEL-1 and related 97.53
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.52
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 97.52
PF08631278 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: 97.51
COG3118304 Thioredoxin domain-containing protein [Posttransla 97.47
KOG0376 476 consensus Serine-threonine phosphatase 2A, catalyt 97.46
KOG1550552 consensus Extracellular protein SEL-1 and related 97.46
PF0051534 TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 97.38
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 97.38
PF0771934 TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 97.35
PF10300468 DUF3808: Protein of unknown function (DUF3808); In 97.3
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 97.28
COG2909894 MalT ATP-dependent transcriptional regulator [Tran 97.25
PF10345608 Cohesin_load: Cohesin loading factor; InterPro: IP 97.25
KOG0890 2382 consensus Protein kinase of the PI-3 kinase family 97.18
KOG0530318 consensus Protein farnesyltransferase, alpha subun 97.14
COG2976207 Uncharacterized protein conserved in bacteria [Fun 97.1
PF08424321 NRDE-2: NRDE-2, necessary for RNA interference; In 97.03
KOG1308 377 consensus Hsp70-interacting protein Hip/Transient 97.03
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.01
PF03704146 BTAD: Bacterial transcriptional activator domain; 97.0
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 96.93
KOG0551 390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 96.91
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 96.82
COG2976207 Uncharacterized protein conserved in bacteria [Fun 96.81
KOG0551390 consensus Hsp90 co-chaperone CNS1 (contains TPR re 96.81
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 96.81
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 96.8
PF04910360 Tcf25: Transcriptional repressor TCF25; InterPro: 96.75
KOG1464440 consensus COP9 signalosome, subunit CSN2 [Posttran 96.74
KOG1308 377 consensus Hsp70-interacting protein Hip/Transient 96.73
KOG2396568 consensus HAT (Half-A-TPR) repeat-containing prote 96.72
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 96.68
PF1318134 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ 96.67
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.64
PF08424 321 NRDE-2: NRDE-2, necessary for RNA interference; In 96.53
KOG2041 1189 consensus WD40 repeat protein [General function pr 96.47
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 96.44
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 96.23
COG0790292 FOG: TPR repeat, SEL1 subfamily [General function 96.17
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 96.16
PF1317433 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ 96.13
KOG3824 472 consensus Huntingtin interacting protein HYPE [Gen 96.03
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 96.02
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 95.89
KOG3783546 consensus Uncharacterized conserved protein [Funct 95.88
PF04781111 DUF627: Protein of unknown function (DUF627); Inte 95.86
COG4649221 Uncharacterized protein conserved in bacteria [Fun 95.8
COG4649221 Uncharacterized protein conserved in bacteria [Fun 95.78
PF1317636 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ 95.75
KOG2396 568 consensus HAT (Half-A-TPR) repeat-containing prote 95.71
PF1456190 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S 95.71
PRK10941269 hypothetical protein; Provisional 95.64
KOG1258577 consensus mRNA processing protein [RNA processing 95.64
PF09986214 DUF2225: Uncharacterized protein conserved in bact 95.61
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 95.53
PF09613160 HrpB1_HrpK: Bacterial type III secretion protein ( 95.52
KOG3824 472 consensus Huntingtin interacting protein HYPE [Gen 95.31
PRK10941269 hypothetical protein; Provisional 95.26
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 95.26
KOG1463411 consensus 26S proteasome regulatory complex, subun 95.24
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 95.19
COG4976 287 Predicted methyltransferase (contains TPR repeat) 95.19
COG5107660 RNA14 Pre-mRNA 3'-end processing (cleavage and pol 95.18
KOG3783546 consensus Uncharacterized conserved protein [Funct 95.12
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 95.06
smart0002834 TPR Tetratricopeptide repeats. Repeats present in 94.94
PF12968144 DUF3856: Domain of Unknown Function (DUF3856); Int 94.89
KOG1538 1081 consensus Uncharacterized conserved protein WDR10, 94.88
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 94.78
PF1485353 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe 94.69
KOG0529 421 consensus Protein geranylgeranyltransferase type I 94.61
PRK11619 644 lytic murein transglycosylase; Provisional 94.47
PF09986214 DUF2225: Uncharacterized protein conserved in bact 94.36
TIGR02561153 HrpB1_HrpK type III secretion protein HrpB1/HrpK. 94.23
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.94
COG5191 435 Uncharacterized conserved protein, contains HAT (H 93.93
KOG3364149 consensus Membrane protein involved in organellar 93.77
KOG1310 758 consensus WD40 repeat protein [General function pr 93.77
COG4976 287 Predicted methyltransferase (contains TPR repeat) 93.65
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 93.64
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 93.47
PF10602177 RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 93.47
PRK15180 831 Vi polysaccharide biosynthesis protein TviD; Provi 93.47
PRK11619 644 lytic murein transglycosylase; Provisional 93.46
KOG15381081 consensus Uncharacterized conserved protein WDR10, 93.38
PF1337442 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT 93.12
KOG3364149 consensus Membrane protein involved in organellar 92.95
KOG0529 421 consensus Protein geranylgeranyltransferase type I 92.95
COG5159421 RPN6 26S proteasome regulatory complex component [ 92.73
KOG2422665 consensus Uncharacterized conserved protein [Funct 92.12
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 92.12
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 92.07
PRK13184932 pknD serine/threonine-protein kinase; Reviewed 91.98
PF04053443 Coatomer_WDAD: Coatomer WD associated region ; Int 91.97
COG3914 620 Spy Predicted O-linked N-acetylglucosamine transfe 91.94
KOG4814 872 consensus Uncharacterized conserved protein [Funct 91.89
KOG18391236 consensus Uncharacterized protein CLU1/cluA/TIF31 91.69
KOG1310 758 consensus WD40 repeat protein [General function pr 91.64
PRK13184932 pknD serine/threonine-protein kinase; Reviewed 91.34
COG1747 711 Uncharacterized N-terminal domain of the transcrip 91.34
KOG1463411 consensus 26S proteasome regulatory complex, subun 91.34
COG5191 435 Uncharacterized conserved protein, contains HAT (H 91.23
COG5159 421 RPN6 26S proteasome regulatory complex component [ 91.01
PF1286294 Apc5: Anaphase-promoting complex subunit 5 90.97
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 90.83
PF1286294 Apc5: Anaphase-promoting complex subunit 5 90.53
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 90.4
KOG2422 665 consensus Uncharacterized conserved protein [Funct 90.09
KOG2581 493 consensus 26S proteasome regulatory complex, subun 89.85
COG2912269 Uncharacterized conserved protein [Function unknow 89.62
PF15015 569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 89.61
PF10255404 Paf67: RNA polymerase I-associated factor PAF67; I 89.6
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 89.59
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 89.43
COG3629280 DnrI DNA-binding transcriptional activator of the 89.36
PF11207203 DUF2989: Protein of unknown function (DUF2989); In 89.14
PF0772126 TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 89.14
KOG0128 881 consensus RNA-binding protein SART3 (RRM superfami 88.63
KOG2581493 consensus 26S proteasome regulatory complex, subun 88.39
KOG4814 872 consensus Uncharacterized conserved protein [Funct 88.22
PF04190260 DUF410: Protein of unknown function (DUF410) ; Int 88.15
COG2912269 Uncharacterized conserved protein [Function unknow 88.1
COG3629280 DnrI DNA-binding transcriptional activator of the 88.03
PF1051638 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat 87.25
PF10373 278 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP 86.78
PF1285434 PPR_1: PPR repeat 86.61
COG1747 711 Uncharacterized N-terminal domain of the transcrip 86.43
PF0772036 TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 86.26
PF00244236 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 85.5
PF1304150 PPR_2: PPR repeat family 85.44
TIGR0350444 FimV_Cterm FimV C-terminal domain. This protein is 84.76
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 84.68
KOG3807 556 consensus Predicted membrane protein ST7 (tumor su 83.92
PF1285434 PPR_1: PPR repeat 83.33
PRK12798421 chemotaxis protein; Reviewed 83.12
KOG3807556 consensus Predicted membrane protein ST7 (tumor su 81.71
KOG2062 929 consensus 26S proteasome regulatory complex, subun 80.47
PF15015569 NYD-SP12_N: Spermatogenesis-associated, N-terminal 80.21
PF1057980 Rapsyn_N: Rapsyn N-terminal myristoylation and lin 80.07
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-62  Score=493.68  Aligned_cols=678  Identities=39%  Similarity=0.559  Sum_probs=597.8

Q ss_pred             CcccccCccccccccCCCCCcchhhccccccccccCCCCCCCccCCCcchhhhhhhhhhhhcccHHHHHHHhhhHhhhcC
Q 005603            2 LCACSGEQFKFEAEDAPQSPESLATRDFSASGFSSRATGDWDSKVDDIQVDEAESTLKEALSLNYEEARALLGRLEYQRG   81 (688)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~l~~~~~~a~~llg~~~~~~g   81 (688)
                      .|.|.+..+...  .-+-.++..++|+|+++|.+... +++..+++.+++.||+.++++++++++++++.+.|+..+++|
T Consensus        40 ~~~ea~~~lakl--~~a~~~e~~ai~~~~~s~i~~~~-~~~~~~~~~~~l~Ea~~il~~glsle~ee~~~~s~~~~~qr~  116 (799)
T KOG4162|consen   40 FVCEAMLILAKL--DYACGEERKAIRNFSASGIDNQY-SENLPLLDLRLLAEAEAILREGLSLEYEEARALSGRLEYQRG  116 (799)
T ss_pred             HHHHHHHHHHHh--hhcccHHHHHHHHHHHhhccccc-ccccchhhhhhHHHHHHHHhhhcccchhhhhhhhhhHHHhhc
Confidence            444554444433  45567888999999999999999 888999999999999999999999999999999999999999


Q ss_pred             CHHHHHhhhhcCCCCccccchhhhhhhhc-ccccccCCCCCCCCCCCCCCCcchhHHHHHHHHHHHhhhhHHhhCChHHH
Q 005603           82 NYDAALQVFQGIDIVSLTPRMTRAVVERT-RPLRKHRSKGEKADSVPPPGLMSLHSISLLLEAILLKAKSLEELGHCKEA  160 (688)
Q Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~g~~~~A  160 (688)
                      |.++|+.+|+++++..+...+...+.... .. .+.+++..  ...-|+.+|+.|...+..++.+.++..+.+.|++.+|
T Consensus       117 ~~e~al~vFe~~~i~~~~~~~e~~i~~~s~~s-~~~~s~~~--~a~~p~~~~s~~~~~Le~~l~~lk~k~L~~~~~iqea  193 (799)
T KOG4162|consen  117 NDEAALRVFEGIDILAITYLQELEIVQNSNSS-LRQRSKAS--FAIEPSTVMSAHGAILEAELIKLKAKSLKRLGRIQEA  193 (799)
T ss_pred             CcHHHHHHhcccchhHHHHHHHHHHHhccCcc-ccCCCccc--cccCCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            99999999999998777777766665542 11 12222110  1112556788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCccccHHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHhhCCCCCCChhhHHHHHHHHH
Q 005603          161 AKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPWNLDPKKVASVQRDLA  240 (688)
Q Consensus       161 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~~~~~~~~~~~~~~~a  240 (688)
                      ++.|+.+|++++...+++.+++.....++++++.+++++++.+|.+.+.+.++|..|++++..+|+.++.+.+++++.++
T Consensus       194 ~e~cr~~L~~ve~~~t~~~~~~~s~~~~l~~vl~~~~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~  273 (799)
T KOG4162|consen  194 AEECRSVLDIVETKATQGSKDTESGALKLQEVLSRAVELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFA  273 (799)
T ss_pred             HHHHHHHHHHHHHHhhccCcchHHHHHHHHHHHHHHHHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhccc
Confidence            99999999999999999999866656689999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCccCCCCCccccCCCccCCCchHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHhcCCHHHHHHHHHHhcCC
Q 005603          241 VTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTGQFELLAEYVEQALPG  320 (688)
Q Consensus       241 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  320 (688)
                      .++.+++.+.. .-...+.+.+.++++++++++.++...++.......||+.+|.++..++...|+++.+.+.|+++++.
T Consensus       274 ~f~~~~~~Ee~-~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~  352 (799)
T KOG4162|consen  274 LFLPKSGQEEV-ILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF  352 (799)
T ss_pred             ccCCCCcHHHH-HHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            88888877654 11345667899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHhH-------------------------------HHHHhHhhhcccchhhH
Q 005603          321 IYNRAERWYILALCYSAAGQNEAALNLLKKDQ-------------------------------VSRGVIQSTTSQKEHFL  369 (688)
Q Consensus       321 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-------------------------------~~~~~~~~~~~~~~~~~  369 (688)
                      .....+.|+.++.++...|....|+.++++..                               |+.++++......+++.
T Consensus       353 ~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~  432 (799)
T KOG4162|consen  353 SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLK  432 (799)
T ss_pred             hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhh
Confidence            99999999999999999999999999999887                               88999998888888899


Q ss_pred             HHHHHHHHHHHHhhhhhccchHHhhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCc
Q 005603          370 AEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNS  449 (688)
Q Consensus       370 ~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~  449 (688)
                      +..+..+|.+|..+......+++|.....++++.++++++.+|.|+.+.++++..|..+++.+.|.++.+++++.++.+.
T Consensus       433 ~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~  512 (799)
T KOG4162|consen  433 PRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDS  512 (799)
T ss_pred             hhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999977666


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhHHhhhhccc-
Q 005603          450 GRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFH-  528 (688)
Q Consensus       450 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~-  528 (688)
                      ..+|..++.++...+++.+|+.+.+.+++..|  ++.........+-...++.++|+..+...+..+...+..-....+ 
T Consensus       513 ~~~whLLALvlSa~kr~~~Al~vvd~al~E~~--~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g  590 (799)
T KOG4162|consen  513 AKAWHLLALVLSAQKRLKEALDVVDAALEEFG--DNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEG  590 (799)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh--hhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence            69999999999999999999999999999999  788888888889999999999999999999998844332211110 


Q ss_pred             -----------------cccc--------------------cccc--cc--cC--CcchHHHHHHHHHHHHHcCChhHHH
Q 005603          529 -----------------KTKY--------------------ITSE--AP--SV--KNLEIATWQDLATIYMKLGSLPDAE  565 (688)
Q Consensus       529 -----------------~~~~--------------------~~~~--~~--~~--~~~~~~~~~~la~~~~~~g~~~~A~  565 (688)
                                       ++..                    .+++  ..  .+  .-.....|...+..+...++.++|.
T Consensus       591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~  670 (799)
T KOG4162|consen  591 KLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEAR  670 (799)
T ss_pred             hhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence                             0000                    0000  00  00  1123567889999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 005603          566 ICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLE  645 (688)
Q Consensus       566 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~~~A~~~~~~al~~~  645 (688)
                      .|+.++-.++|..+..|+..|.++...|++.+|...|..++.++|+++++...+|.++.+.|+..+.++...+..+++++
T Consensus       671 ~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d  750 (799)
T KOG4162|consen  671 SCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD  750 (799)
T ss_pred             HHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999999998555555999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcccCCCCCCCCC
Q 005603          646 PTNHDAWMNLGLISKMEGSLQQAADYFQAAYELKLSAPVQSFV  688 (688)
Q Consensus       646 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~f~  688 (688)
                      |.++++|+.+|.++...|+.++|.+||+.|+++++++|+.||+
T Consensus       751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pFs  793 (799)
T KOG4162|consen  751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPFS  793 (799)
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCccccc
Confidence            9999999999999999999999999999999999999999996

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>PRK11447 cellulose synthase subunit BcsC; Provisional Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional Back     alignment and domain information
>PRK15174 Vi polysaccharide export protein VexE; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>PRK10049 pgaA outer membrane protein PgaA; Provisional Back     alignment and domain information
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2003 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PLN03077 Protein ECB2; Provisional Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>PRK11788 tetratricopeptide repeat protein; Provisional Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>PRK14574 hmsH outer membrane protein; Provisional Back     alignment and domain information
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03218 maturation of RBCL 1; Provisional Back     alignment and domain information
>KOG0495 consensus HAT repeat protein [RNA processing and modification] Back     alignment and domain information
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] Back     alignment and domain information
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] Back     alignment and domain information
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1129 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] Back     alignment and domain information
>TIGR00540 hemY_coli hemY protein Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK12370 invasion protein regulator; Provisional Back     alignment and domain information
>KOG1125 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK11189 lipoprotein NlpI; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>PRK10747 putative protoheme IX biogenesis protein; Provisional Back     alignment and domain information
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] Back     alignment and domain information
>PLN02789 farnesyltranstransferase Back     alignment and domain information
>KOG1840 consensus Kinesin light chain [Cytoskeleton] Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3785 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO Back     alignment and domain information
>PRK15359 type III secretion system chaperone protein SscB; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>KOG3060 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>PRK04841 transcriptional regulator MalT; Provisional Back     alignment and domain information
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional Back     alignment and domain information
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>KOG4340 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional Back     alignment and domain information
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG2047 consensus mRNA splicing factor [RNA processing and modification] Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD Back     alignment and domain information
>KOG0553 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>PRK02603 photosystem I assembly protein Ycf3; Provisional Back     alignment and domain information
>PRK10866 outer membrane biogenesis protein BamD; Provisional Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>CHL00033 ycf3 photosystem I assembly protein Ycf3 Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C Back     alignment and domain information
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>COG0457 NrfG FOG: TPR repeat [General function prediction only] Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>PRK11906 transcriptional regulator; Provisional Back     alignment and domain information
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A Back     alignment and domain information
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>PRK15331 chaperone protein SicA; Provisional Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>PRK10153 DNA-binding transcriptional activator CadC; Provisional Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PRK10803 tol-pal system protein YbgF; Provisional Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] Back     alignment and domain information
>COG3898 Uncharacterized membrane-bound protein [Function unknown] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi Back     alignment and domain information
>PF12688 TPR_5: Tetratrico peptide repeat Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>COG4105 ComL DNA uptake lipoprotein [General function prediction only] Back     alignment and domain information
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2300 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13512 TPR_18: Tetratricopeptide repeat Back     alignment and domain information
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PF13371 TPR_9: Tetratricopeptide repeat Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3616 consensus Selective LIM binding factor [Transcription] Back     alignment and domain information
>KOG2796 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4234 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins Back     alignment and domain information
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional Back     alignment and domain information
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>KOG4555 consensus TPR repeat-containing protein [Function unknown] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2471 consensus TPR repeat-containing protein [General function prediction only] Back     alignment and domain information
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF13428 TPR_14: Tetratricopeptide repeat Back     alignment and domain information
>KOG2610 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length Back     alignment and domain information
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13431 TPR_17: Tetratricopeptide repeat Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene Back     alignment and domain information
>PF13281 DUF4071: Domain of unknown function (DUF4071) Back     alignment and domain information
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] Back     alignment and domain information
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] Back     alignment and domain information
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription] Back     alignment and domain information
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi Back     alignment and domain information
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] Back     alignment and domain information
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function Back     alignment and domain information
>KOG2041 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A Back     alignment and domain information
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] Back     alignment and domain information
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>KOG1258 consensus mRNA processing protein [RNA processing and modification] Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia Back     alignment and domain information
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] Back     alignment and domain information
>PRK10941 hypothetical protein; Provisional Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] Back     alignment and domain information
>KOG3783 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>smart00028 TPR Tetratricopeptide repeats Back     alignment and domain information
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11619 lytic murein transglycosylase; Provisional Back     alignment and domain information
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function Back     alignment and domain information
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome Back     alignment and domain information
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional Back     alignment and domain information
>PRK11619 lytic murein transglycosylase; Provisional Back     alignment and domain information
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] Back     alignment and domain information
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A Back     alignment and domain information
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] Back     alignment and domain information
>KOG1310 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>PRK13184 pknD serine/threonine-protein kinase; Reviewed Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] Back     alignment and domain information
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>PF12862 Apc5: Anaphase-promoting complex subunit 5 Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>KOG2422 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed Back     alignment and domain information
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models Back     alignment and domain information
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] Back     alignment and domain information
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG4814 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function Back     alignment and domain information
>COG2912 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] Back     alignment and domain information
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] Back     alignment and domain information
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] Back     alignment and domain information
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] Back     alignment and domain information
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] Back     alignment and domain information
>PF13041 PPR_2: PPR repeat family Back     alignment and domain information
>TIGR03504 FimV_Cterm FimV C-terminal domain Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>PF12854 PPR_1: PPR repeat Back     alignment and domain information
>PRK12798 chemotaxis protein; Reviewed Back     alignment and domain information
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] Back     alignment and domain information
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal Back     alignment and domain information
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query688
2fo7_A136 Crystal Structure Of An 8 Repeat Consensus Tpr Supe 5e-09
1na0_A125 Design Of Stable Alpha-Helical Arrays From An Ideal 1e-07
2wqh_A125 Crystal Structure Of Ctpr3y3 Length = 125 1e-06
1w3b_A 388 The Superhelical Tpr Domain Of O-Linked Glcnac Tran 4e-05
3kd7_A125 Designed Tpr Module (Ctpr390) In Complex With Its P 5e-05
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 Back     alignment and structure 
Iteration: 1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 36/132 (27%), Positives = 59/132 (44%), Gaps = 2/132 (1%)
Query: 547 TWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISL 606
            W +L   Y K G   +A    +KA  ++  S  +W+  G  +  Q  Y EA+  +  +L
Sbjct: 3   AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 62
Query: 607 AIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGSLQ 666
            ++P    +  +      K G     I   +   AL L+P + +AW NLG     +G   
Sbjct: 63  ELDPRSAEAWYNLGNAYYKQGDYDEAI--EYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 667 QAADYFQAAYEL 678
           +A +Y+Q A EL
Sbjct: 121 EAIEYYQKALEL 132
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 Back     alignment and structure
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 Back     alignment and structure
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. Length = 388 Back     alignment and structure
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query688
2xpi_A 597 Anaphase-promoting complex subunit CUT9; cell cycl 3e-23
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 9e-14
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 8e-13
2xpi_A597 Anaphase-promoting complex subunit CUT9; cell cycl 1e-04
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 2e-16
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 7e-12
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 2e-10
3fp2_A537 TPR repeat-containing protein YHR117W; TOM71, mito 1e-05
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-05
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 3e-05
3fp2_A 537 TPR repeat-containing protein YHR117W; TOM71, mito 1e-04
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 3e-16
3v6t_A499 DHAX3; tandem repeats, DNA specific binding protei 3e-15
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 5e-16
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 6e-16
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 9e-16
1w3b_A388 UDP-N-acetylglucosamine--peptide N-acetylglucosami 1e-12
2gw1_A 514 Mitochondrial precursor proteins import receptor; 6e-16
2gw1_A514 Mitochondrial precursor proteins import receptor; 8e-12
2gw1_A514 Mitochondrial precursor proteins import receptor; 3e-09
2gw1_A514 Mitochondrial precursor proteins import receptor; 7e-06
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-15
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 5e-11
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 5e-09
3tax_A 723 UDP-N-acetylglucosamine--peptide N- acetylglucosam 2e-06
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 6e-15
3urz_A208 Uncharacterized protein; tetratricopeptide repeats 4e-05
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 2e-14
3hym_B 330 Cell division cycle protein 16 homolog; APC, anaph 1e-13
3hym_B 330 Cell division cycle protein 16 homolog; APC, anaph 8e-12
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 2e-11
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 1e-10
3hym_B330 Cell division cycle protein 16 homolog; APC, anaph 3e-08
3hym_B 330 Cell division cycle protein 16 homolog; APC, anaph 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-09
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 3e-13
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 1e-12
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 1e-08
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 1e-05
3as5_A186 MAMA; tetratricopeptide repeats (TPR) containing p 6e-04
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 6e-13
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 2e-12
2ho1_A252 Type 4 fimbrial biogenesis protein PILF; type IV p 6e-12
2ho1_A 252 Type 4 fimbrial biogenesis protein PILF; type IV p 7e-08
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 1e-12
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 5e-12
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 1e-10
3ugm_A 1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 7e-04
3ugm_A1047 TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan 9e-04
3cv0_A 327 Peroxisome targeting signal 1 receptor PEX5; TPR m 1e-12
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 2e-10
3cv0_A 327 Peroxisome targeting signal 1 receptor PEX5; TPR m 2e-10
3cv0_A 327 Peroxisome targeting signal 1 receptor PEX5; TPR m 4e-10
3cv0_A327 Peroxisome targeting signal 1 receptor PEX5; TPR m 2e-05
3ieg_A 359 DNAJ homolog subfamily C member 3; TPR motif, chap 2e-12
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 1e-10
3ieg_A359 DNAJ homolog subfamily C member 3; TPR motif, chap 7e-10
3ieg_A 359 DNAJ homolog subfamily C member 3; TPR motif, chap 1e-09
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 6e-12
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 1e-11
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 2e-11
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 9e-08
2q7f_A 243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 2e-04
2q7f_A243 YRRB protein; TPR, protein binding; 2.49A {Bacillu 4e-04
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 8e-12
2pl2_A217 Hypothetical conserved protein TTC0263; TPR, prote 7e-07
4eqf_A 365 PEX5-related protein; accessory protein, tetratric 9e-12
4eqf_A365 PEX5-related protein; accessory protein, tetratric 5e-07
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-11
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 7e-11
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-09
2y4t_A 450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-08
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 1e-08
2y4t_A450 DNAJ homolog subfamily C member 3; chaperone, endo 6e-05
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 2e-11
2vsy_A 568 XCC0866; transferase, glycosyl transferase, GT-B, 3e-09
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 8e-11
2vq2_A225 PILW, putative fimbrial biogenesis and twitching m 2e-10
3u4t_A272 TPR repeat-containing protein; structural genomics 8e-11
3u4t_A 272 TPR repeat-containing protein; structural genomics 4e-10
3u4t_A272 TPR repeat-containing protein; structural genomics 5e-10
3u4t_A272 TPR repeat-containing protein; structural genomics 1e-09
3u4t_A 272 TPR repeat-containing protein; structural genomics 1e-06
3u4t_A272 TPR repeat-containing protein; structural genomics 3e-05
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 1e-10
2vgx_A148 Chaperone SYCD; alternative dimer assembly, tetrat 3e-08
2e2e_A177 Formate-dependent nitrite reductase complex NRFG; 3e-10
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 4e-10
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 1e-09
2xcb_A142 PCRH, regulatory protein PCRH; protein transport, 5e-06
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 4e-10
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 5e-08
3uq3_A258 Heat shock protein STI1; HSP90, peptide binding, c 1e-05
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 5e-10
1xnf_A 275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 3e-09
1xnf_A275 Lipoprotein NLPI; TPR, tetratricopeptide, structur 2e-06
4g1t_A472 Interferon-induced protein with tetratricopeptide 5e-10
4g1t_A472 Interferon-induced protein with tetratricopeptide 6e-09
4g1t_A472 Interferon-induced protein with tetratricopeptide 9e-08
2fo7_A136 Synthetic consensus TPR protein; tetratricopeptide 9e-10
1fch_A 368 Peroxisomal targeting signal 1 receptor; protein-p 2e-09
1fch_A368 Peroxisomal targeting signal 1 receptor; protein-p 3e-09
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 7e-09
3mkr_A291 Coatomer subunit epsilon; tetratricopeptide repeat 1e-07
1hxi_A121 PEX5, peroxisome targeting signal 1 receptor PEX5; 7e-09
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 8e-09
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 2e-07
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 2e-06
4abn_A 474 Tetratricopeptide repeat protein 5; P53 cofactor, 2e-05
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 1e-08
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 2e-08
3gyz_A151 Chaperone protein IPGC; asymmetric homodimer, tetr 2e-05
2kck_A112 TPR repeat; tetratricopeptide repeat, structural g 7e-07
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 7e-07
1na0_A125 Designed protein CTPR3; de novo protein; HET: IPT; 4e-06
2h6f_A 382 Protein farnesyltransferase/geranylgeranyltransfer 3e-06
2h6f_A 382 Protein farnesyltransferase/geranylgeranyltransfer 4e-06
2kat_A115 Uncharacterized protein; NESG, structure, structur 4e-05
3gw4_A203 Uncharacterized protein; structural genomics, PSI- 1e-04
1hh8_A213 P67PHOX, NCF-2, neutrophil cytosol factor 2; cell 2e-04
1zu2_A158 Mitochondrial import receptor subunit TOM20-3; TPR 2e-04
4a1s_A411 PINS, partner of inscuteable; cell cycle, LGN, mit 3e-04
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
 Score =  103 bits (259), Expect = 3e-23
 Identities = 68/404 (16%), Positives = 120/404 (29%), Gaps = 46/404 (11%)

Query: 283 ASKEMEWDAEIMDHLTYALS--VTGQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQ 340
             K ++      D    A     TG +      + +      + A R Y+ A C      
Sbjct: 107 GEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACR-YLAAFCLVKLYD 165

Query: 341 NEAALNLLKKDQVSRGVIQSTTSQKEHFL-----AEAYKFLGICYGNVARKSISDTERVF 395
            + ALNLL +    R   ++              A      G  Y N++           
Sbjct: 166 WQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF--------- 216

Query: 396 FQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKL 455
               A E    A + + +  E    L   H +  + E      + YS     ++     L
Sbjct: 217 --DRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSL 274

Query: 456 LALILSADQRLKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAM 515
             L L+      + +   D+     G     +LL  KA     + +    +     +L  
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL-- 332

Query: 516 IQAQRELHSKNFHKTKYITSEAPSVKNLEIATWQDLATIYMKLGSLPDAEICTEKAKSIE 575
                E+   N                     +        + G      + +       
Sbjct: 333 -----EIDPYNL------------------DVYPLHLASLHESGEKNKLYLISNDLVDRH 369

Query: 576 FYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMKLGRQSMPIAR 635
                +W   G+ +   ++  EA   FS S  ++P + P+ I  A      G      A 
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQ--AI 427

Query: 636 SFLMNALRLEPTNHDAWMNLGLISKMEGSLQQAADYFQAAYELK 679
           S    A RL    H  ++ LG+     G++  A +Y Q++Y L 
Sbjct: 428 SAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 Back     alignment and structure
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 Back     alignment and structure
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 Back     alignment and structure
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 Back     alignment and structure
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 Back     alignment and structure
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 Back     alignment and structure
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382 Back     alignment and structure
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 Back     alignment and structure
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 Back     alignment and structure
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 Back     alignment and structure
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158 Back     alignment and structure
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 688
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 1e-16
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-05
d1w3ba_ 388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-04
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 2e-04
d1w3ba_ 388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 0.001
d1w3ba_388 a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, 0.002
d1ya0a1 497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 3e-07
d1ya0a1 497 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T 5e-04
d1xnfa_259 a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli 6e-07
d1xnfa_259 a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli 0.001
d1zbpa1 264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 1e-05
d1zbpa1 264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 4e-04
d1zbpa1264 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V 0.001
d1hh8a_192 a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- 1e-05
d1a17a_159 a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo 6e-05
d1dcea1334 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr 3e-04
d2fbna1153 a.118.8.1 (A:22-174) Putative 70 kda peptidylproly 9e-04
d2c2la1201 a.118.8.1 (A:24-224) STIP1 homology and U box-cont 0.002
d1kt1a1168 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M 0.002
d1p5qa1170 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d 0.003
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 1e-16
 Identities = 57/375 (15%), Positives = 115/375 (30%), Gaps = 18/375 (4%)

Query: 305 GQFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQ 364
           G FE    +  Q      +      +L+  +    + + + +                 +
Sbjct: 13  GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTL-----------AIK 61

Query: 365 KEHFLAEAYKFLGICYGNVARKSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLE 424
           +   LAEAY  LG  Y    +   +        +   + ++                G  
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAV 121

Query: 425 HAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQRLKDAQSIVDFSLDEAGSMD 484
            A    ++   D   + SD        G    A               V +S        
Sbjct: 122 QAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181

Query: 485 QLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLE 544
           Q E+       + A       +  Y  L           ++ F +       A S+    
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINL-----GNVLKEARIFDRAVAAYLRALSLSPNH 236

Query: 545 IATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSI 604
                +LA +Y + G +  A     +A  ++ + P ++       + +    EA   ++ 
Sbjct: 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNT 296

Query: 605 SLAIEPDYIPSIISTAEILMKLGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGS 664
           +L + P +  S+ + A I  + G   +  A      AL + P    A  NL  + + +G 
Sbjct: 297 ALRLCPTHADSLNNLANIKREQGN--IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354

Query: 665 LQQAADYFQAAYELK 679
           LQ+A  +++ A  + 
Sbjct: 355 LQEALMHYKEAIRIS 369
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159 Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334 Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153 Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168 Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query688
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1w3ba_388 O-GlcNAc transferase p110 subunit, OGT {Human (Hom 100.0
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 100.0
d1fcha_323 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 100.0
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.96
d2h6fa1315 Protein farnesyltransferase alpha-subunit {Human ( 99.96
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.95
d1dcea1334 Rab geranylgeranyltransferase alpha-subunit, N-ter 99.94
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.93
d1hz4a_366 Transcription factor MalT domain III {Escherichia 99.93
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.92
d1xnfa_259 Lipoprotein NlpI {Escherichia coli [TaxId: 562]} 99.91
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.84
d1ya0a1497 SMG-7 {Human (Homo sapiens) [TaxId: 9606]} 99.83
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.82
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.8
d2onda1308 Cleavage stimulation factor 77 kDa subunit CSTF3 { 99.8
d1qqea_290 Vesicular transport protein sec17 {Baker's yeast ( 99.77
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.73
d1hh8a_192 Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H 99.71
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.68
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.66
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.66
d2c2la1201 STIP1 homology and U box-containing protein 1, STU 99.65
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.65
d1a17a_159 Protein phosphatase 5 {Human (Homo sapiens) [TaxId 99.63
d1ouva_265 Cysteine rich protein C (HcpC) {Helicobacter pylor 99.61
d1elwa_117 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.6
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.58
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.54
d1p5qa1170 FKBP52 (FKBP4), C-terminal domain {Human (Homo sap 99.53
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.52
d1ihga1169 Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} 99.52
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.51
d1kt1a1168 FKBP51, C-terminal domain {Monkey (Saimiri bolivie 99.49
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.46
d2fbna1153 Putative 70 kda peptidylprolyl isomerase PFL2275c 99.44
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.44
d1hxia_112 Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 99.4
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.4
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.37
d1elra_128 Hop {Human (Homo sapiens) [TaxId: 9606]} 99.34
d1zu2a1145 Mitochondrial import receptor subunit tom20-3 {Tha 99.32
d1nzna_122 Mitochondria fission protein Fis1 {Human (Homo sap 99.28
d1zbpa1264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 99.24
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.17
d2hr2a1156 Hypothetical protein CT2138 {Chlorobium tepidum [T 99.14
d1zbpa1 264 Hypothetical protein VPA1032 {Vibrio parahaemolyti 99.05
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.99
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.95
d1tjca_95 Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human 98.94
d2ff4a2179 Probable regulatory protein EmbR, middle domain {M 98.89
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 98.21
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 98.0
d2pqrb1124 Mitochondria fission protein Fis1 {Baker's yeast ( 97.98
d1klxa_133 Cysteine rich protein B (HcpB) {Helicobacter pylor 97.95
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 97.65
d1qsaa1450 70 KDa soluble lytic transglycosylase (SLT70), sup 97.34
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 96.04
d1b89a_336 Clathrin heavy chain proximal leg segment {Cow (Bo 95.96
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-44  Score=273.95  Aligned_cols=385  Identities=19%  Similarity=0.132  Sum_probs=340.0

Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCC
Q ss_conf             86656772178589999999999998731999999888740418999999998808999970999999999999617999
Q 005603          146 LKAKSLEELGHCKEAAKECKIILDIVESGLPNGMPEGFGEDCKLQEMFHKALELLPHLWIKAGLLEEAIIAYRRALVKPW  225 (688)
Q Consensus       146 ~~~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~g~~~eA~~~y~~al~~~~  225 (688)
                      -+|..+++.|+|++|+..|+.++..        .|.           ...++..++.++...|++++|+..|++++..  
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~--------~p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--   62 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ--------EPD-----------NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--   62 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH--------CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH--------CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--
T ss_conf             9999999869999999999999986--------899-----------8999999999999869999999999999985--


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC
Q ss_conf             99915679999999999984186688997644578756898359999999999798986415793999999999999309
Q 005603          226 NLDPKKVASVQRDLAVTLLYGGVEARLPPELKVWGPIAPKDNVEEAILLLLILMEKVASKEMEWDAEIMDHLTYALSVTG  305 (688)
Q Consensus       226 ~~~~~~~~~~~~~~a~~ll~~~~~~~~~~~~~~~~~~~~~~~~eea~~~l~~~~~~~~l~~~p~~~~~~~~l~~~~~~~g  305 (688)
                                                                                   .|.++.++..+|.++...|
T Consensus        63 -------------------------------------------------------------~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_          63 -------------------------------------------------------------NPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             -------------------------------------------------------------CTTCHHHHHHHHHHHHHHT
T ss_pred             -------------------------------------------------------------CCCCHHHHHHHHHHHHHHC
T ss_conf             -------------------------------------------------------------9998999999999964200


Q ss_pred             CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999997628887877999999999999499099999999969988867621022134599999999888885221
Q 005603          306 QFELLAEYVEQALPGIYNRAERWYILALCYSAAGQNEAALNLLKKDQVSRGVIQSTTSQKEHFLAEAYKFLGICYGNVAR  385 (688)
Q Consensus       306 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~  385 (688)
                      ++++|+..+..+....|.....+...+......+....+........         ......  .......+........
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~--~~~~~~~~~~~~~~~~  150 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---------QYNPDL--YCVRSDLGNLLKALGR  150 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH---------HHCTTC--THHHHHHHHHHHTTSC
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---------CCCCCC--CCCCCCCCCCCCCCCH
T ss_conf             02222222221211222222222222222222222222222211122---------222222--2222222222211000


Q ss_pred             HCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Q ss_conf             01233774278999999999999819999899999999999828999999999999862499957999999999998289
Q 005603          386 KSISDTERVFFQKEALESLNCAFLNEREDPEMMYYLGLEHAVQRNVEAAFDYAIMYSDTVAGNSGRGWKLLALILSADQR  465 (688)
Q Consensus       386 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~la~~~~~~~~  465 (688)
                      .           ..+...+.+.+...|....++..+|..+...|++++|...++++++.+|++. .++..+|.++...|+
T Consensus       151 ~-----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~  218 (388)
T d1w3ba_         151 L-----------EEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFL-DAYINLGNVLKEARI  218 (388)
T ss_dssp             H-----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHTTTC
T ss_pred             H-----------HHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHCCCC
T ss_conf             1-----------3567888874025861068998636301024719999999999998494649-999997155220052


Q ss_pred             HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
Q ss_conf             89999999999853089880999999999999918957999999999999896397321101111001223545786069
Q 005603          466 LKDAQSIVDFSLDEAGSMDQLELLRLKAVLQIAQEQPKQAIGTYRILLAMIQAQRELHSKNFHKTKYITSEAPSVKNLEI  545 (688)
Q Consensus       466 ~~~A~~~~~~al~~~p~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  545 (688)
                      +++|+..++++....+  .....+..+|.++...|++++|+..|++++...|+                         ++
T Consensus       219 ~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-------------------------~~  271 (388)
T d1w3ba_         219 FDRAVAAYLRALSLSP--NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-------------------------FP  271 (388)
T ss_dssp             TTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-------------------------CH
T ss_pred             HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------------------CH
T ss_conf             9999999998577755--47999999999999878999999999999984999-------------------------89


Q ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             99999999999829946899999998720988946799999999981878999999999880399998999999999999
Q 005603          546 ATWQDLATIYMKLGSLPDAEICTEKAKSIEFYSPGSWHTTGMLFEAQSQYKEALVSFSISLAIEPDYIPSIISTAEILMK  625 (688)
Q Consensus       546 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  625 (688)
                      .++..+|.++...|++++|+..++.++...|.....+..+|.++...|++++|+..|+++++..|+++.++..+|.++..
T Consensus       272 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  351 (388)
T d1w3ba_         272 DAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ  351 (388)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             99999999999748799999999865404873001015799999987899999999999998688989999999999998


Q ss_pred             HCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
Q ss_conf             289973999999999998299999999999999998399
Q 005603          626 LGRQSMPIARSFLMNALRLEPTNHDAWMNLGLISKMEGS  664 (688)
Q Consensus       626 ~g~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  664 (688)
                      .|+++  +|+..|+++++++|+++.+|.++|.+|..+||
T Consensus       352 ~g~~~--~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         352 QGKLQ--EALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCCH--HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CCCHH--HHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf             59999--99999999997099989999999999998589
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Back     information, alignment and structure
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure