Citrus Sinensis ID: 005619
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 688 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.872 | 0.480 | 0.297 | 7e-63 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.843 | 0.494 | 0.330 | 8e-62 | |
| O22476 | 1196 | Protein BRASSINOSTEROID I | no | no | 0.812 | 0.467 | 0.323 | 3e-61 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.856 | 0.470 | 0.310 | 2e-59 | |
| Q9ZWC8 | 1166 | Serine/threonine-protein | no | no | 0.821 | 0.484 | 0.315 | 2e-59 | |
| Q9LJF3 | 1164 | Receptor-like protein kin | no | no | 0.819 | 0.484 | 0.322 | 1e-58 | |
| Q8GUQ5 | 1207 | Brassinosteroid LRR recep | N/A | no | 0.834 | 0.475 | 0.331 | 4e-57 | |
| Q9FRS6 | 1029 | Leucine-rich repeat recep | no | no | 0.825 | 0.551 | 0.308 | 6e-57 | |
| Q8L899 | 1207 | Systemin receptor SR160 O | N/A | no | 0.834 | 0.475 | 0.330 | 9e-57 | |
| C0LGS2 | 1136 | Probable LRR receptor-lik | no | no | 0.863 | 0.522 | 0.308 | 7e-56 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 242 bits (618), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 228/766 (29%), Positives = 357/766 (46%), Gaps = 166/766 (21%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFS-FCSLANLSKLEVFQLSMEADLLQ 59
+SSN L G +P+ ++NLTSLE L L+ N+ G + S SL N+ L + + D+
Sbjct: 102 LSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDI-- 159
Query: 60 VKIENCLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL------ 112
E L++L+L +C L G IP+ L ++ L L N L G P L
Sbjct: 160 --PETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDL 217
Query: 113 --------------------LENNTKLEVLYLTNNSFSG--------------FQLTSAQ 138
LEN LE+L L NNS +G L + Q
Sbjct: 218 TVFTAAENMLNGTIPAELGRLEN---LEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQ 274
Query: 139 -HGLI-----------SLDISSNNFTGKLPQ---NMGIV-------------LPKLDCMN 170
GLI +LD+S+NN TG++P+ NM + LPK C N
Sbjct: 275 LQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSICSN 334
Query: 171 --------ISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQ---------------- 206
+S G IP + K Q L+ LD+S+N AG + +
Sbjct: 335 NTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNN 394
Query: 207 ------SP-VTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLR 259
SP ++N +L+WL L +NN +G++ L +L L+L N FSG+I +
Sbjct: 395 TLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGN 454
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ L ++D+ NH G IP +G L +L + +N L G +P N L ILD+++N
Sbjct: 455 CTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADN 514
Query: 320 NLSGSMISTLN-LSSVEHLYLQSNALGGSIPNTIFR-----------------------G 355
LSGS+ S+ L +E L L +N+L G++P+++
Sbjct: 515 QLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGS 574
Query: 356 SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNR 415
S+ + D+ +N F IP ++ NL L L N L G IP L ++R+LS++D+S N
Sbjct: 575 SSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNA 634
Query: 416 LNGSIP---ACITNLLFWKVGSRYLSG----FVMVVMDLGVADIRN----------YYNS 458
L G+IP L + + +LSG ++ + LG + + +N
Sbjct: 635 LTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNC 694
Query: 459 T--VQLSLDG--IDG---RSLGTQVEVNFMTKNRYESYKGVILDYMAGLD------LSSN 505
T + LSLDG ++G + +G +N + ++ + + G + M L LS N
Sbjct: 695 TKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQ-FSGSLPQAMGKLSKLYELRLSRN 753
Query: 506 KLTGDIPSEICDLQNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 564
LTG+IP EI LQ++ L+LS+N +G IP + L +E+LDLSHN+L G++P +
Sbjct: 754 SLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVG 813
Query: 565 ELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 610
++ SL +VS+N+L G + K+QFS + S+ GN LCG P+++
Sbjct: 814 DMKSLGYLNVSFNNLGGKL--KKQFSRWPADSFLGNTGLCGSPLSR 857
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 207/626 (33%), Positives = 306/626 (48%), Gaps = 46/626 (7%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRL-FSFCSLANLSKLEVFQLSMEADLLQV 60
+ N L+G +P I L +L L L N+ G++ F +L NL L + + +E D+
Sbjct: 200 AGNHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDI-PA 258
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+I NC QL++ N G IP L + L+ L + NKL + P+ L T+L
Sbjct: 259 EIGNCSSLVQLELYD--NQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRL-TQLT 315
Query: 121 VLYLTNNSFSGFQLTSAQHGLIS----LDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
L L+ N G S + G + L + SNNFTG+ PQ++ L L + + N+
Sbjct: 316 HLGLSENHLVG--PISEEIGFLESLEVLTLHSNNFTGEFPQSI-TNLRNLTVLTVGFNNI 372
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNL 236
G +P+ +G + LR L N G + S ++NC L+ L LS+N G+I P
Sbjct: 373 SGELPADLGLLTNLRNLSAHDNLLTGPIPSS-ISNCTGLKLLDLSHNQMTGEI-PRGFGR 430
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
L F+ + NHF+G+I D + S L L +++N+L+G + +G L IL +S N
Sbjct: 431 MNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYNS 490
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG 355
L G IP + NL L IL + N +G + + NL+ ++ L + SN L G IP +F
Sbjct: 491 LTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDM 550
Query: 356 SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNR 415
L LDL +N F G+IP ++ +L L L+GN G IP L L L+ D+S N
Sbjct: 551 KLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNL 610
Query: 416 LNGSIP----ACITNL-LFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470
L G+IP A + N+ L+ + L+G + +LG ++ + + L G R
Sbjct: 611 LTGTIPGELLASLKNMQLYLNFSNNLLTG--TIPKELGKLEMVQEIDLSNNL-FSGSIPR 667
Query: 471 SLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD-LQNIHGLNLSHN 529
SL Q N T LD S N L+G IP E+ + I LNLS N
Sbjct: 668 SL--QACKNVFT-----------------LDFSQNNLSGHIPDEVFQGMDMIISLNLSRN 708
Query: 530 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589
SG IP+SF N+ + SLDLS N L G+IP L L +L ++ N+L G +P+ F
Sbjct: 709 SFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVF 768
Query: 590 STFDESSYRGNLHLCG--PPINKSCT 613
+ S GN LCG P+ K CT
Sbjct: 769 KNINASDLMGNTDLCGSKKPL-KPCT 793
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|O22476|BRI1_ARATH Protein BRASSINOSTEROID INSENSITIVE 1 OS=Arabidopsis thaliana GN=BRI1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 205/633 (32%), Positives = 306/633 (48%), Gaps = 74/633 (11%)
Query: 17 LTSLEYLALYDNKFKGR-LFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLS 75
L SLE L L N G + + +L+ +S V + C+ L+ L
Sbjct: 172 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV---NLEFLD 228
Query: 76 LPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG---- 131
+ + N FL L++LD+S NKL+G+F + + T+L++L +++N F G
Sbjct: 229 VSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP 287
Query: 132 FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG------ 185
L S Q+ L ++ N FTG++P + L +++S N F G +P G
Sbjct: 288 LPLKSLQY----LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 343
Query: 186 -------------------KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
KM+GL++LD+S N+F+GEL +S SL L LS+NNF
Sbjct: 344 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 403
Query: 227 GQIFPNYVNLTR--LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNF 284
G I PN + L LYL NN F+GKI L SEL+ L +S N+LSG IPS +G+
Sbjct: 404 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 463
Query: 285 SNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNAL 344
S L L + N+LEG IP + + + ++E L L N L
Sbjct: 464 SKLRDLKLWLNMLEGEIPQEL-----------------------MYVKTLETLILDFNDL 500
Query: 345 GGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLR 404
G IP+ + + L + L +N G IP I NL L L N G IP +L R
Sbjct: 501 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR 560
Query: 405 KLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMV-VMDLGVADIRNYYNSTVQLS 463
L +DL+ N NG+IPA + K+ + +++G V + + G+ + + + L
Sbjct: 561 SLIWLDLNTNLFNGTIPAAMFKQ-SGKIAANFIAGKRYVYIKNDGMK--KECHGAGNLLE 617
Query: 464 LDGIDGRSL---GTQVEVNFMTKNRYESYKGVILD---YMAGLDLSSNKLTGDIPSEICD 517
GI L T+ N +T Y + D M LD+S N L+G IP EI
Sbjct: 618 FQGIRSEQLNRLSTRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 676
Query: 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577
+ + LNL HN +SGSIP+ +L+ + LDLS NKL+G+IP ++ L L++ D+S N
Sbjct: 677 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 736
Query: 578 DLSGPIPDKEQFSTFDESSYRGNLHLCGPPINK 610
+LSGPIP+ QF TF + + N LCG P+ +
Sbjct: 737 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPR 769
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Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. Binds brassinolide, and less effectively castasterone, but not 2,3,22,23-O-tetramethylbrassinolide or ecdysone. May be involved in a feedback regulation of brassinosteroid biosynthesis. Phosphorylates BRI1-associated receptor kinase 1 (BAK1), Transthyretin-Like protein (TTL) and SERK1 on 'Ser-299' and 'Thr-462' in vitro. May have a guanylyl cyclase activity. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 201/647 (31%), Positives = 315/647 (48%), Gaps = 58/647 (8%)
Query: 4 NQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIE 63
N+L+G LP+ + L +L+ L L DN F G + S L +L ++ L++ + LQ I
Sbjct: 226 NRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPS--QLGDLVSIQY--LNLIGNQLQGLIP 281
Query: 64 NCLPTFQ-LKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
L L+ L L + NL GVI L++L L+ N+L+G+ P + NNT L+
Sbjct: 282 KRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNRLSGSLPKTICSNNTSLKQ 341
Query: 122 LYLTNNSFSG---FQLTSAQHGLISLDISSNNFTGKLPQNM-----------------GI 161
L+L+ SG ++++ Q L LD+S+N TG++P ++ G
Sbjct: 342 LFLSETQLSGEIPAEISNCQS-LKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGT 400
Query: 162 V------LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL 215
+ L L + N+ EG +P IG + L ++ + N+F+GE+ + NC L
Sbjct: 401 LSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVE-IGNCTRL 459
Query: 216 EWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSG 275
+ + N G+I + L L L+L N G I L ++ V+D+++N LSG
Sbjct: 460 QEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSG 519
Query: 276 HIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVE 335
IPS G + L + + N L+GN+P NL L ++ S N +GS+ SS
Sbjct: 520 SIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYL 579
Query: 336 HLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP 395
+ N G IP + + + L+ L L N F GRIP + S L L + N L G
Sbjct: 580 SFDVTENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGI 639
Query: 396 IPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNY 455
IP +L +KL+ +DL++N L+G IP W +G L G + + + V +
Sbjct: 640 IPVELGLCKKLTHIDLNNNYLSGVIPT-------W-LGKLPLLGELKLSSNKFVGSLPTE 691
Query: 456 YNSTVQLSLDGIDGRSLGTQV-----------EVNFMTKNRYESYKGVI--LDYMAGLDL 502
S + +DG SL + +N I L + L L
Sbjct: 692 IFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGKLSKLFELRL 751
Query: 503 SSNKLTGDIPSEICDLQNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP 561
S N LTG+IP EI LQ++ L+LS+N +G IP + S L +ESLDLSHN+L G++P
Sbjct: 752 SRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLPKLESLDLSHNQLVGEVPG 811
Query: 562 QLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPI 608
Q+ ++ SL ++SYN+L G + K+QFS + ++ GN LCG P+
Sbjct: 812 QIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGLCGSPL 856
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZWC8|BRL1_ARATH Serine/threonine-protein kinase BRI1-like 1 OS=Arabidopsis thaliana GN=BRL1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 231 bits (588), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 191/605 (31%), Positives = 295/605 (48%), Gaps = 40/605 (6%)
Query: 84 IPNFLLHQF--NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG--FQLTSAQH 139
IP + F +LKYLDL+HN L+G+F L L+ N+ SG F +T
Sbjct: 191 IPESFISDFPASLKYLDLTHNNLSGDFSDLSFGICGNLTFFSLSQNNLSGDKFPITLPNC 250
Query: 140 GLI-SLDISSNNFTGKLPQN-MGIVLPKLDCMNISKNSFEGNIPSSIGKM-QGLRLLDVS 196
+ +L+IS NN GK+P L ++++ N G IP + + + L +LD+S
Sbjct: 251 KFLETLNISRNNLAGKIPNGEYWGSFQNLKQLSLAHNRLSGEIPPELSLLCKTLVILDLS 310
Query: 197 SNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN-LTRLLFLYLDNNHFSGKIKD 255
N F+GEL S T C L+ L L NN G V+ +T + +LY+ N+ SG +
Sbjct: 311 GNTFSGELP-SQFTACVWLQNLNLGNNYLSGDFLNTVVSKITGITYLYVAYNNISGSVPI 369
Query: 256 GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS---MSKNLLEGNIPVQFNNLAILQ 312
L S L VLD+S+N +G++PS + + +L ++ N L G +P++ L+
Sbjct: 370 SLTNCSNLRVLDLSSNGFTGNVPSGFCSLQSSPVLEKILIANNYLSGTVPMELGKCKSLK 429
Query: 313 ILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTI-FRGSALETLDLRDNYFFG 370
+D+S N L+G + + L ++ L + +N L G+IP + +G LETL L +N G
Sbjct: 430 TIDLSFNELTGPIPKEIWMLPNLSDLVMWANNLTGTIPEGVCVKGGNLETLILNNNLLTG 489
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITN---L 427
IP I+ +N+ + L N L G IP + L KL+I+ L +N L+G++P + N L
Sbjct: 490 SIPESISRCTNMIWISLSSNRLTGKIPSGIGNLSKLAILQLGNNSLSGNVPRQLGNCKSL 549
Query: 428 LFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSL----DGIDGRSLGTQVEVNFMTK 483
++ + S L+G + + + S Q + G D R G VE +
Sbjct: 550 IWLDLNSNNLTGDLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRA 609
Query: 484 NRYES------------YKGVIL------DYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525
R E Y G+ + M D+S N ++G IP ++ + LN
Sbjct: 610 ERLERLPMVHSCPATRIYSGMTMYTFSANGSMIYFDISYNAVSGFIPPGYGNMGYLQVLN 669
Query: 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
L HN ++G+IP+SF LK I LDLSHN L G +P L L LS DVS N+L+GPIP
Sbjct: 670 LGHNRITGTIPDSFGGLKAIGVLDLSHNNLQGYLPGSLGSLSFLSDLDVSNNNLTGPIPF 729
Query: 586 KEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDESAVDMVAFYWSFVASC 645
Q +TF S Y N LCG P+ + C + TS A+ ++ V +F C
Sbjct: 730 GGQLTTFPVSRYANNSGLCGVPL-RPCGSAPRRPITSRIHAKKQTVATAVIAGIAFSFMC 788
Query: 646 VTVML 650
+++
Sbjct: 789 FVMLV 793
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. Binds brassinolide. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LJF3|BRL3_ARATH Receptor-like protein kinase BRI1-like 3 OS=Arabidopsis thaliana GN=BRL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 228 bits (581), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 195/605 (32%), Positives = 298/605 (49%), Gaps = 41/605 (6%)
Query: 84 IPNFLLHQF--NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG--FQLTSAQH 139
IP + F +LK+LDLS N + G+F L V L+ NS SG F ++ +
Sbjct: 191 IPETFIADFPNSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSISGDRFPVSLSNC 250
Query: 140 GLI-SLDISSNNFTGKLP-QNMGIVLPKLDCMNISKNSFEGNIPSSIGKM-QGLRLLDVS 196
L+ +L++S N+ GK+P + L ++++ N + G IP + + + L +LD+S
Sbjct: 251 KLLETLNLSRNSLIGKIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSLLCRTLEVLDLS 310
Query: 197 SNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN-LTRLLFLYLDNNHFSGKIKD 255
N G+L QS T+C SL+ L L NN G V+ L+R+ LYL N+ SG +
Sbjct: 311 GNSLTGQLPQS-FTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLPFNNISGSVPI 369
Query: 256 GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS---MSKNLLEGNIPVQFNNLAILQ 312
L S L VLD+S+N +G +PS + + +L ++ N L G +PV+ L+
Sbjct: 370 SLTNCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYLSGTVPVELGKCKSLK 429
Query: 313 ILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTI-FRGSALETLDLRDNYFFG 370
+D+S N L+G + + L + L + +N L G IP +I G LETL L +N G
Sbjct: 430 TIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDGGNLETLILNNNLLTG 489
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACI---TNL 427
+P I++ +N+ + L N L G IP + +L KL+I+ L +N L G+IP+ + NL
Sbjct: 490 SLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNSLTGNIPSELGNCKNL 549
Query: 428 LFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSL----DGIDGRSLGTQVEVNFMTK 483
++ + S L+G + + + S Q + G D R G VE +
Sbjct: 550 IWLDLNSNNLTGNLPGELASQAGLVMPGSVSGKQFAFVRNEGGTDCRGAGGLVEFEGIRA 609
Query: 484 NRYES------------YKGVIL------DYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525
R E Y G+ + M LDLS N ++G IP + + LN
Sbjct: 610 ERLEHFPMVHSCPKTRIYSGMTMYMFSSNGSMIYLDLSYNAVSGSIPLGYGAMGYLQVLN 669
Query: 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
L HN L+G+IP+SF LK I LDLSHN L G +P L L LS DVS N+L+GPIP
Sbjct: 670 LGHNLLTGTIPDSFGGLKAIGVLDLSHNDLQGFLPGSLGGLSFLSDLDVSNNNLTGPIPF 729
Query: 586 KEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDESAVDMVA-FYWSFVAS 644
Q +TF + Y N LCG P+ C++ + + + A M A +SF+
Sbjct: 730 GGQLTTFPLTRYANNSGLCGVPL-PPCSSGSRPTRSHAHPKKQSIATGMSAGIVFSFMCI 788
Query: 645 CVTVM 649
+ +M
Sbjct: 789 VMLIM 793
|
Receptor with a dual specificity kinase activity acting on both serine/threonine- and tyrosine-containing substrates. Binds brassinolide. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development. May be involved in cell growth and vascular differentiation. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8GUQ5|BRI1_SOLLC Brassinosteroid LRR receptor kinase OS=Solanum lycopersicum GN=CURL3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 205/618 (33%), Positives = 301/618 (48%), Gaps = 44/618 (7%)
Query: 19 SLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLP 77
SL+ L L N G LF + S +LE F L K+ +P K LS
Sbjct: 186 SLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSLKGN------KLAGSIPELDFKNLSYL 239
Query: 78 NCNLG----VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ 133
+ + V P+F NL++LDLS NK G+ + L + KL L LTNN F G
Sbjct: 240 DLSANNFSTVFPSFK-DCSNLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLV 297
Query: 134 LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLL 193
L L + N+F G P + + + +++S N+F G +P S+G+ L L+
Sbjct: 298 PKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELV 357
Query: 194 DVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKI 253
D+S N F+G+L ++ +++ + LS N F G + ++ NL +L L + +N+ +G I
Sbjct: 358 DISYNNFSGKLPVDTLSKLSNIKTMVLSFNKFVGGLPDSFSNLLKLETLDMSSNNLTGVI 417
Query: 254 KDGLLRS--SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAIL 311
G+ + + L VL + NN G IP + N S L L +S N L G+IP +L+ L
Sbjct: 418 PSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKL 477
Query: 312 QILDISENNLSGSMISTLN-LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370
+ L + N LSG + L L ++E+L L N L G IP ++ + L + L +N G
Sbjct: 478 KDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSG 537
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFW 430
IP + SNL L L N + G IP +L + L +DL+ N LNGSIP LF
Sbjct: 538 EIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPP----LFK 593
Query: 431 KVGS---RYLSG--FVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSL---GTQVEVNFMT 482
+ G+ L+G +V + D + + + L GI L T+ NF
Sbjct: 594 QSGNIAVALLTGKRYVYIKND----GSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFT- 648
Query: 483 KNRYESYKGVILDY------MAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP 536
Y+G+ M LDLS NKL G IP E+ + + LNL HN LSG IP
Sbjct: 649 ----RVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIP 704
Query: 537 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESS 596
+ LK + LDLS+N+ NG IP LT L L + D+S N+LSG IP+ F TF +
Sbjct: 705 QQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYR 764
Query: 597 YRGNLHLCGPPINKSCTN 614
+ N LCG P+ C++
Sbjct: 765 FANN-SLCGYPLPIPCSS 781
|
Receptor with a serine/threonine-protein kinase activity. Regulates, in response to brassinosteroid binding, a signaling cascade involved in plant development, including expression of light- and stress-regulated genes, promotion of cell elongation, normal leaf and chloroplast senescence, and flowering. May be involved in a feedback regulation of brassinosteroid biosynthesis. May be also involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. Solanum lycopersicum (taxid: 4081) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 184/597 (30%), Positives = 293/597 (49%), Gaps = 29/597 (4%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG---FQLTSAQHGLISLDISSN 149
+L+ LDLS+N + P L N T L+V+ ++ NSF G + L A GL ++ SSN
Sbjct: 102 SLQALDLSNNAFESSLPKSL-SNLTSLKVIDVSVNSFFGTFPYGLGMAT-GLTHVNASSN 159
Query: 150 NFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPV 209
NF+G LP+++G L+ ++ FEG++PSS ++ L+ L +S N F G++ + +
Sbjct: 160 NFSGFLPEDLGNAT-TLEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKV-I 217
Query: 210 TNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS 269
SLE + L N F G+I + LTRL +L L + +G+I L + +L + +
Sbjct: 218 GELSSLETIILGYNGFMGEIPEEFGKLTRLQYLDLAVGNLTGQIPSSLGQLKQLTTVYLY 277
Query: 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL 329
N L+G +P +G ++L L +S N + G IP++ L LQ+L++ N L+G + S +
Sbjct: 278 QNRLTGKLPRELGGMTSLVFLDLSDNQITGEIPMEVGELKNLQLLNLMRNQLTGIIPSKI 337
Query: 330 -NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388
L ++E L L N+L GS+P + + S L+ LD+ N G IP + NL L+L
Sbjct: 338 AELPNLEVLELWQNSLMGSLPVHLGKNSPLKWLDVSSNKLSGDIPSGLCYSRNLTKLILF 397
Query: 389 GNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWK---VGSRYLSGFVMVVM 445
N G IP ++ L + + N ++GSIPA +L + + L+G +
Sbjct: 398 NNSFSGQIPEEIFSCPTLVRVRIQKNHISGSIPAGSGDLPMLQHLELAKNNLTG--KIPD 455
Query: 446 DLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYE-SYKGVILDY--MAGLDL 502
D+ ++ ++ + + ++ + N + I D ++ LDL
Sbjct: 456 DIALSTSLSFIDISFNHLSSLSSSIFSSPNLQTFIASHNNFAGKIPNQIQDRPSLSVLDL 515
Query: 503 SSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562
S N +G IP I + + LNL N L G IP++ + + M+ LDLS+N L G IP
Sbjct: 516 SFNHFSGGIPERIASFEKLVSLNLKSNQLVGEIPKALAGMHMLAVLDLSNNSLTGNIPAD 575
Query: 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCG---PPINKSCTNLLELL 619
L +L +VS+N L GPIP F+ D GN LCG PP +KS L
Sbjct: 576 LGASPTLEMLNVSFNKLDGPIPSNMLFAAIDPKDLVGNNGLCGGVLPPCSKS-------L 628
Query: 620 ETSSKGAEDESAVDMVAFYWSFVASCVTVMLGL--LAILWVNPYWRRLWFYFIEECI 674
S+KG A + V + V V +G+ LA W+ W L+ F E I
Sbjct: 629 ALSAKGRNPGRIHVNHAVFGFIVGTSVIVAMGMMFLAGRWIYTRW-DLYSNFAREYI 684
|
Involved in the regulation of procambium maintenance and polarity during vascular-tissue development. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q8L899|BRI1_SOLPE Systemin receptor SR160 OS=Solanum peruvianum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 222 bits (565), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 204/618 (33%), Positives = 301/618 (48%), Gaps = 44/618 (7%)
Query: 19 SLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLP 77
SL+ L L N G LF + S +LE F + K+ +P K LS
Sbjct: 186 SLQVLDLSYNNISGFNLFPWVSSMGFVELEFFSIKGN------KLAGSIPELDFKNLSYL 239
Query: 78 NCNLG----VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ 133
+ + V P+F NL++LDLS NK G+ + L + KL L LTNN F G
Sbjct: 240 DLSANNFSTVFPSFK-DCSNLQHLDLSSNKFYGDIGSSL-SSCGKLSFLNLTNNQFVGLV 297
Query: 134 LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLL 193
L L + N+F G P + + + +++S N+F G +P S+G+ L L+
Sbjct: 298 PKLPSESLQYLYLRGNDFQGVYPNQLADLCKTVVELDLSYNNFSGMVPESLGECSSLELV 357
Query: 194 DVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKI 253
D+S+N F+G+L + +++ + LS N F G + ++ NL +L L + +N+ +G I
Sbjct: 358 DISNNNFSGKLPVDTLLKLSNIKTMVLSFNKFVGGLPDSFSNLPKLETLDMSSNNLTGII 417
Query: 254 KDGLLRS--SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAIL 311
G+ + + L VL + NN G IP + N S L L +S N L G+IP +L+ L
Sbjct: 418 PSGICKDPMNNLKVLYLQNNLFKGPIPDSLSNCSQLVSLDLSFNYLTGSIPSSLGSLSKL 477
Query: 312 QILDISENNLSGSMISTLN-LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370
+ L + N LSG + L L ++E+L L N L G IP ++ + L + L +N G
Sbjct: 478 KDLILWLNQLSGEIPQELMYLQALENLILDFNDLTGPIPASLSNCTKLNWISLSNNQLSG 537
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFW 430
IP + SNL L L N + G IP +L + L +DL+ N LNGSIP LF
Sbjct: 538 EIPASLGRLSNLAILKLGNNSISGNIPAELGNCQSLIWLDLNTNFLNGSIPPP----LFK 593
Query: 431 KVGS---RYLSG--FVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSL---GTQVEVNFMT 482
+ G+ L+G +V + D + + + L GI L T+ NF
Sbjct: 594 QSGNIAVALLTGKRYVYIKND----GSKECHGAGNLLEFGGIRQEQLDRISTRHPCNFT- 648
Query: 483 KNRYESYKGVILDY------MAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP 536
Y+G+ M LDLS NKL G IP E+ + + LNL HN LSG IP
Sbjct: 649 ----RVYRGITQPTFNHNGSMIFLDLSYNKLEGSIPKELGAMYYLSILNLGHNDLSGMIP 704
Query: 537 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESS 596
+ LK + LDLS+N+ NG IP LT L L + D+S N+LSG IP+ F TF +
Sbjct: 705 QQLGGLKNVAILDLSYNRFNGTIPNSLTSLTLLGEIDLSNNNLSGMIPESAPFDTFPDYR 764
Query: 597 YRGNLHLCGPPINKSCTN 614
+ N LCG P+ C++
Sbjct: 765 FANN-SLCGYPLPLPCSS 781
|
Receptor with a serine/threonine-protein kinase activity. Involved in the perception of systemin, a peptide hormone responsible for the systemic activation of defense genes in leaves of wounded plants. May also regulate, in response to brassinosteroid binding, a signaling cascade involved in plant development. Solanum peruvianum (taxid: 4082) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (557), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 208/674 (30%), Positives = 323/674 (47%), Gaps = 80/674 (11%)
Query: 5 QLSGILPSVIANLTSLEYLALYDNKFKGRL---FSFC-------------------SLAN 42
QLSG + I+ L L L+L N F G + ++C ++ N
Sbjct: 79 QLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKLPPAMRN 138
Query: 43 LSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSL-PNCNLGVIPNFLLHQFNLKYLDLSH 101
L+ LEVF ++ + L +I LP+ L+ L + N G IP+ L + L+ L+LS+
Sbjct: 139 LTSLEVFNVA--GNRLSGEIPVGLPS-SLQFLDISSNTFSGQIPSGLANLTQLQLLNLSY 195
Query: 102 NKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNM 159
N+L G P L N L+ L+L N G ++ + L+ L S N G +P
Sbjct: 196 NQLTGEIPAS-LGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGGVIPAAY 254
Query: 160 GIVLPKLDCMNISKNSFEGNIP------SSIGKMQ--------------------GLRLL 193
G LPKL+ +++S N+F G +P +S+ +Q GL++L
Sbjct: 255 G-ALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANCRTGLQVL 313
Query: 194 DVSSNKFAGELSQSP--VTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG 251
D+ N+ +G P +TN SL+ L +S N F G+I P+ NL RL L L NN +G
Sbjct: 314 DLQENRISGRF---PLWLTNILSLKNLDVSGNLFSGEIPPDIGNLKRLEELKLANNSLTG 370
Query: 252 KIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAIL 311
+I + + L VLD N L G IP ++G L +LS+ +N G +P NL L
Sbjct: 371 EIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVPSSMVNLQQL 430
Query: 312 QILDISENNLSGSM-ISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370
+ L++ ENNL+GS + + L+S+ L L N G++P +I S L L+L N F G
Sbjct: 431 ERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSG 490
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP---ACITNL 427
IP + L AL L + G +P +L L + ++ L N +G +P + + +L
Sbjct: 491 EIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSL 550
Query: 428 LFWKVGSRYLSG-----FVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482
+ + S SG F + + + ++ N+ + ++ + + +EV +
Sbjct: 551 RYVNLSSNSFSGEIPQTFGFLRLLVSLSLSDNHISGSIPPEIGNC------SALEVLELR 604
Query: 483 KNRYESYKGVILDYMAG---LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESF 539
NR + L + LDL N L+G+IP EI +++ L+L HN LSG IP SF
Sbjct: 605 SNRLMGHIPADLSRLPRLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSF 664
Query: 540 SNLKMIESLDLSHNKLNGQIPPQLTELHS-LSKFDVSYNDLSGPIPDKEQFSTFDESSYR 598
S L + +DLS N L G+IP L + S L F+VS N+L G IP + S +
Sbjct: 665 SGLSNLTKMDLSVNNLTGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFS 724
Query: 599 GNLHLCGPPINKSC 612
GN LCG P+N+ C
Sbjct: 725 GNTELCGKPLNRRC 738
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 688 | ||||||
| 358345471 | 933 | Receptor kinase [Medicago truncatula] gi | 0.989 | 0.729 | 0.497 | 1e-168 | |
| 297842171 | 966 | leucine-rich repeat family protein [Arab | 0.969 | 0.690 | 0.469 | 1e-159 | |
| 15221162 | 965 | receptor like protein 15 [Arabidopsis th | 0.962 | 0.686 | 0.460 | 1e-157 | |
| 12324907 | 910 | putative disease resistance protein; 468 | 0.962 | 0.727 | 0.460 | 1e-157 | |
| 255553269 | 2793 | receptor-kinase, putative [Ricinus commu | 0.902 | 0.222 | 0.502 | 1e-155 | |
| 12323814 | 1068 | disease resistance protein, putative; 11 | 0.950 | 0.612 | 0.460 | 1e-154 | |
| 186495296 | 1000 | receptor like protein 13 [Arabidopsis th | 0.950 | 0.654 | 0.460 | 1e-154 | |
| 238478394 | 1083 | receptor like protein 1 [Arabidopsis tha | 0.969 | 0.615 | 0.456 | 1e-154 | |
| 238478392 | 913 | receptor like protein 1 [Arabidopsis tha | 0.969 | 0.730 | 0.456 | 1e-154 | |
| 240254032 | 1034 | receptor like protein 1 [Arabidopsis tha | 0.969 | 0.645 | 0.456 | 1e-153 |
| >gi|358345471|ref|XP_003636801.1| Receptor kinase [Medicago truncatula] gi|355502736|gb|AES83939.1| Receptor kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 362/727 (49%), Positives = 473/727 (65%), Gaps = 46/727 (6%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSN G +PS I +L SLEYL+L+D F G +FSF SL N SKLEVF LS + + L V
Sbjct: 213 LSSNNFVGNIPSFIISLKSLEYLSLFDTNFDG-IFSFSSLNNHSKLEVFLLSPKTNNLYV 271
Query: 61 KIENC---LPTFQLKVLSLPNCNL-----GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL 112
+ E PTFQLKVL L NC L G P FLL+Q L+ LDLSHNKL+GNFP+W+
Sbjct: 272 ETEESPSWHPTFQLKVLQLRNCFLNSKRDGTFPTFLLYQHELQLLDLSHNKLSGNFPSWI 331
Query: 113 LENNTKLEVLYLTNNSFSG-FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNI 171
LENNTKLE LYL NNSF+G +L + +HGL+ L IS+N G+L +++G + P L +N+
Sbjct: 332 LENNTKLETLYLMNNSFTGTLELPTFKHGLLDLQISNNKIGGQLQEDIGKIFPNLYYVNL 391
Query: 172 SKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFP 231
SKNSFEG +PSSIG+MQ +R LD+S+N F+GELS ++N SL L+LS+N+F G + P
Sbjct: 392 SKNSFEGILPSSIGEMQTIRTLDLSNNNFSGELSSHLISNLTSLRLLRLSHNSFHGLV-P 450
Query: 232 NYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291
NLTRL +LYL+NN FSG I+DG+ +S L LDISNN LSG IP W+G F+ L +LS
Sbjct: 451 LLSNLTRLNWLYLNNNSFSGVIEDGVSNNSSLFSLDISNNMLSGRIPRWIGRFTKLSVLS 510
Query: 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPN 350
+SKN L+G IP + NL L LD+SENNLS + N ++ LYLQ NAL G+IP
Sbjct: 511 LSKNRLQGEIPNELCNLISLSYLDLSENNLSDFLPYCFKNFKYMKFLYLQKNALQGNIPY 570
Query: 351 TIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMD 410
+ + L +LDLRDN FFG IP IN S LR LLL GN L GPIP +C+L + IMD
Sbjct: 571 AFSQLTKLTSLDLRDNNFFGNIPQWINRLSKLRVLLLAGNKLTGPIPIYVCELEHVRIMD 630
Query: 411 LSHNRLNGSIPACITNLLF-------WKVGSRYL-----------------SGFVMVVMD 446
LSHN +N +IP CI N+ F VG R + + ++ +V D
Sbjct: 631 LSHNWINETIPPCIKNISFKMVEFQTTAVGGRAVQNDNDSKDKIQYYGNTATSYIFLVDD 690
Query: 447 L-----GVADIRNYYNSTVQLSLDGIDGRSLGTQ-VEVNFMTKNRYESYKGVILDYMAGL 500
+ DI +YNS++ L+ D + + VE+ F TK+ Y SYKG L+ M GL
Sbjct: 691 IWFTPGNTFDI--FYNSSLSLNHPIADEYMISYEIVEIEFRTKSYYLSYKGNNLNLMTGL 748
Query: 501 DLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560
DLSSN L+G IP EI +L++I LNLSHN SGSIP +F NL IESLDLS+N L+G +P
Sbjct: 749 DLSSNNLSGSIPPEIGELRDIKALNLSHNRFSGSIPGTFPNLINIESLDLSYNNLSGALP 808
Query: 561 PQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLE 620
LT L+SL+ F+VSYN SG +P QF+ FDE++YRGN LCG IN +C N +
Sbjct: 809 QNLTNLYSLAIFNVSYNKFSGRVPTTMQFANFDENNYRGNSDLCGSVINITC-NHTSIFP 867
Query: 621 TSSKGAEDESAVDMVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIEECIDLCYYW 680
+S + ++A+DM +FYWS VAS VTV++GL ILWVN +W R+WF +++ CI C+
Sbjct: 868 PAST-TQHQTAIDMESFYWSCVASYVTVVIGLAVILWVNSHWCRVWFRYVDLCIFYCFSR 926
Query: 681 LFKYVFY 687
FK VF+
Sbjct: 927 CFKNVFH 933
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297842171|ref|XP_002888967.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297334808|gb|EFH65226.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 324/690 (46%), Positives = 449/690 (65%), Gaps = 23/690 (3%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSNQL+G +PS + +L SLEYL+L+DN F+G FSF SLANLS L V +L ++ LQV
Sbjct: 278 LSSNQLTGTVPSTLGSLPSLEYLSLFDNDFEGS-FSFGSLANLSNLMVLKLCSKSSSLQV 336
Query: 61 KIENCL-PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
E+ P FQL V++L +CN+ +P+FL+HQ +L+++DLS+NK++G P+WLL NNTKL
Sbjct: 337 LSESSWKPKFQLSVIALRSCNMEKVPHFLIHQKDLRHVDLSNNKISGKLPSWLLANNTKL 396
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
+VL L NN F+ FQ+ + H L+ LD S+N F P+N+G + P L MNI KN F+GN
Sbjct: 397 KVLLLQNNFFTSFQIPKSAHDLLFLDASANEFNHLFPENIGWIFPHLRYMNIYKNDFQGN 456
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+G M+GL+ LD+S N F G+L +S V C+S+ L+LS+N G+IFP NLT L
Sbjct: 457 LPSSLGNMKGLQYLDLSHNSFHGKLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNLTSL 516
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
L L++DNN F+GKI GL L +LD+SNN+L+G IPSW+G +L L +S N L+G
Sbjct: 517 LGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKG 576
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALE 359
IP N + LQ+LD+S N+LSG + + L LQ N L G+I +T+ +E
Sbjct: 577 EIPTSLFNKSSLQLLDLSTNSLSGGIPPHHDSRDGVVLLLQDNNLSGTIADTLLVN--VE 634
Query: 360 TLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 419
LDLR+N F G IP IN N+ LLLRGN L G IPHQLC L + ++DLS+NRLNGS
Sbjct: 635 ILDLRNNRFSGNIPEFINTQ-NISILLLRGNKLTGRIPHQLCGLSNIQLLDLSNNRLNGS 693
Query: 420 IPACITNLLF----------WKVGSRYLSG-FVMVVMDLGVADIRN---YYNSTVQLSLD 465
IP+C++N F + G + S F + ++ +N Y+ S + L
Sbjct: 694 IPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDLSSNKNSGIYFKSLLMLDPF 753
Query: 466 GIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525
+D ++ TQ ++ F TK+RY++Y G L + G+DLS N+L+G+IP E L + LN
Sbjct: 754 SMDYKA-ATQTKIEFATKHRYDAYMGGNLKLLFGIDLSENELSGEIPVEFGGLLELRALN 812
Query: 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
LSHN LSG IP+S S+++ +ES DLS N+L G+IP QLTEL SLS F VS+N+LSG IP+
Sbjct: 813 LSHNNLSGVIPKSLSSMEKMESFDLSFNRLQGRIPAQLTELTSLSVFKVSHNNLSGVIPE 872
Query: 586 KEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAED-ESAVDMVAFYWSFVAS 644
QF+TFD SY GN LCG P N+SC N E + ED ES +DM +FYWSF A+
Sbjct: 873 GRQFNTFDAESYLGNRLLCGQPTNRSCNN--NSFEEADDEVEDNESTIDMESFYWSFGAA 930
Query: 645 CVTVMLGLLAILWVNPYWRRLWFYFIEECI 674
VT+++G+LA L + W+R WF ++ I
Sbjct: 931 YVTILVGILASLSFDSPWKRFWFDTVDAFI 960
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15221162|ref|NP_177559.1| receptor like protein 15 [Arabidopsis thaliana] gi|12323812|gb|AAG51871.1|AC079678_1 disease resistance protein, putative; 1096-4664 [Arabidopsis thaliana] gi|332197443|gb|AEE35564.1| receptor like protein 15 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 561 bits (1445), Expect = e-157, Method: Compositional matrix adjust.
Identities = 320/695 (46%), Positives = 450/695 (64%), Gaps = 33/695 (4%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSN+L+G +PS + +L SLEYL+L+DN F+G FSF SLANLS L V +L ++ LQV
Sbjct: 275 LSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGS-FSFGSLANLSNLMVLKLCSKSSSLQV 333
Query: 61 KIENCL-PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
E+ P FQL V++L +CN+ +P+FLLHQ +L+++DLS N ++G P+WLL NNTKL
Sbjct: 334 LSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKL 393
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
+VL L NN F+ FQ+ + H L+ LD+S+N+F P+N+G + P L +N SKN+F+ N
Sbjct: 394 KVLLLQNNLFTSFQIPKSAHNLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQEN 453
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+G M G++ +D+S N F G L +S V C+S+ L+LS+N G+IFP N T +
Sbjct: 454 LPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNI 513
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
L L++DNN F+GKI GL L +LD+SNN+L+G IPSW+G +L L +S N L+G
Sbjct: 514 LGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKG 573
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALE 359
+IP+ N + LQ+LD+S N+LSG + + + L LQ N L G+IP+T+ + +E
Sbjct: 574 DIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVE 631
Query: 360 TLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 419
LDLR+N F G+IP IN N+ LLLRGN G IPHQLC L + ++DLS+NRLNG+
Sbjct: 632 ILDLRNNRFSGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGT 690
Query: 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGV---ADIRN----------------YYNSTV 460
IP+C++N F G S D G+ +D+ N Y+ S +
Sbjct: 691 IPSCLSNTSF-GFGKECTS----YDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLL 745
Query: 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN 520
L +D ++ TQ ++ F TK+RY++Y G L + G+DLS N+L+G+IP E L
Sbjct: 746 TLDPLSMDYKA-ATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLE 804
Query: 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+ LNLSHN LSG IP+S S+++ +ES DLS N+L G+IP QLTEL SLS F VS+N+LS
Sbjct: 805 LRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLS 864
Query: 581 GPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAE-DESAVDMVAFYW 639
G IP QF+TFD SY GN LCG P N+SC N E + G E DES +DMV+FY
Sbjct: 865 GVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNN--NSYEEADNGVEADESIIDMVSFYL 922
Query: 640 SFVASCVTVMLGLLAILWVNPYWRRLWFYFIEECI 674
SF A+ VT+++G+LA L + W R WFY ++ I
Sbjct: 923 SFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 957
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12324907|gb|AAG52409.1|AC020579_11 putative disease resistance protein; 46848-50365 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1444), Expect = e-157, Method: Compositional matrix adjust.
Identities = 320/695 (46%), Positives = 450/695 (64%), Gaps = 33/695 (4%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSN+L+G +PS + +L SLEYL+L+DN F+G FSF SLANLS L V +L ++ LQV
Sbjct: 220 LSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGS-FSFGSLANLSNLMVLKLCSKSSSLQV 278
Query: 61 KIENC-LPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
E+ P FQL V++L +CN+ +P+FLLHQ +L+++DLS N ++G P+WLL NNTKL
Sbjct: 279 LSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKL 338
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
+VL L NN F+ FQ+ + H L+ LD+S+N+F P+N+G + P L +N SKN+F+ N
Sbjct: 339 KVLLLQNNLFTSFQIPKSAHNLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQEN 398
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+G M G++ +D+S N F G L +S V C+S+ L+LS+N G+IFP N T +
Sbjct: 399 LPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNI 458
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
L L++DNN F+GKI GL L +LD+SNN+L+G IPSW+G +L L +S N L+G
Sbjct: 459 LGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKG 518
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALE 359
+IP+ N + LQ+LD+S N+LSG + + + L LQ N L G+IP+T+ + +E
Sbjct: 519 DIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLL--ANVE 576
Query: 360 TLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 419
LDLR+N F G+IP IN N+ LLLRGN G IPHQLC L + ++DLS+NRLNG+
Sbjct: 577 ILDLRNNRFSGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGT 635
Query: 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGV---ADIRN----------------YYNSTV 460
IP+C++N F G S D G+ +D+ N Y+ S +
Sbjct: 636 IPSCLSNTSF-GFGKECTS----YDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLL 690
Query: 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN 520
L +D ++ TQ ++ F TK+RY++Y G L + G+DLS N+L+G+IP E L
Sbjct: 691 TLDPLSMDYKA-ATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLE 749
Query: 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+ LNLSHN LSG IP+S S+++ +ES DLS N+L G+IP QLTEL SLS F VS+N+LS
Sbjct: 750 LRALNLSHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLS 809
Query: 581 GPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAE-DESAVDMVAFYW 639
G IP QF+TFD SY GN LCG P N+SC N E + G E DES +DMV+FY
Sbjct: 810 GVIPQGRQFNTFDAESYFGNRLLCGQPTNRSCNN--NSYEEADNGVEADESIIDMVSFYL 867
Query: 640 SFVASCVTVMLGLLAILWVNPYWRRLWFYFIEECI 674
SF A+ VT+++G+LA L + W R WFY ++ I
Sbjct: 868 SFAAAYVTILIGILASLSFDSPWSRFWFYKVDAFI 902
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255553269|ref|XP_002517677.1| receptor-kinase, putative [Ricinus communis] gi|223543309|gb|EEF44841.1| receptor-kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 329/655 (50%), Positives = 436/655 (66%), Gaps = 34/655 (5%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
++SN+ SG + SV++ LTSL+YL L NKF+G LFSF SLAN KLE+F+LS + +L++
Sbjct: 1242 LTSNEFSGNIQSVVSKLTSLKYLFLSGNKFEG-LFSFSSLANHKKLEIFELSSGSTMLEL 1300
Query: 61 KIENCL--PTFQLKVLSLPNCNLGV----IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLE 114
+ E + PTFQLKV+ LPNCNL + IP+FLL+Q +L+++DLSHN L G FP+W+L+
Sbjct: 1301 ETEIPVWFPTFQLKVIDLPNCNLNLRTRRIPSFLLYQHDLQFIDLSHNNLIGAFPSWILQ 1360
Query: 115 NNTKLEVLYLTNNSFSG-FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
NN++LEV+ + NNSF+G FQL S +H LI+L ISSN+ G++P+++G++L L +N+S
Sbjct: 1361 NNSRLEVMNMMNNSFTGTFQLPSYRHELINLKISSNSIAGQIPKDIGLLLSNLRYLNMSW 1420
Query: 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNY 233
N FEGNIPSSI +M+GL +LD+S+N F+GEL +S ++N L L LSNNNF G+IFP
Sbjct: 1421 NCFEGNIPSSISQMEGLSILDLSNNYFSGELPRSLLSNSTYLVALVLSNNNFQGRIFPET 1480
Query: 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293
+NL L L ++NN+FSGKI L VLDIS
Sbjct: 1481 MNLEELTVLDMNNNNFSGKIDVDFFYCPRLSVLDIS------------------------ 1516
Query: 294 KNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF 353
KN + G IP+Q NL+ ++ILD+SEN G+M S N SS+ +L+LQ N L G IP+ +
Sbjct: 1517 KNKVAGVIPIQLCNLSSVEILDLSENRFFGAMPSCFNASSLRYLFLQKNGLNGLIPHVLS 1576
Query: 354 RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
R S L +DLR+N F G IP I++ S L LLL GN L G IP+QLCQLR L IMDLSH
Sbjct: 1577 RSSNLVVVDLRNNKFSGNIPSWISQLSELHVLLLGGNALGGHIPNQLCQLRNLKIMDLSH 1636
Query: 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473
N L GSIP+C N+ F + S + V D YY +T++L L G+ S
Sbjct: 1637 NLLCGSIPSCFHNISFGSMVEESFSSSSIGVAMASHYDSYAYYKATLELDLPGLLSWSSS 1696
Query: 474 TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSG 533
++V+V F+ K RY SYKG +++ MAG+DLS N+L G+IPSEI D+Q I LNLS+N LSG
Sbjct: 1697 SEVQVEFIMKYRYNSYKGSVINLMAGIDLSRNELRGEIPSEIGDIQEIRSLNLSYNHLSG 1756
Query: 534 SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFD 593
SIP SFSNLK +ESLDL +N L+G+IP QL EL+ L FDVSYN+LSG I +K QF TFD
Sbjct: 1757 SIPFSFSNLKNLESLDLRNNSLSGEIPTQLVELNFLGTFDVSYNNLSGRILEKGQFGTFD 1816
Query: 594 ESSYRGNLHLCGPPINKSCTNLLELLETSSKGA--EDESAVDMVAFYWSFVASCV 646
ESSY+GN LCG I++SC + S EDE +DM FYWSF AS V
Sbjct: 1817 ESSYKGNPELCGDLIHRSCNTEATTPPSPSPDVDEEDEGPIDMFWFYWSFCASYV 1871
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12323814|gb|AAG51873.1|AC079678_3 disease resistance protein, putative; 11609-15699 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 317/689 (46%), Positives = 440/689 (63%), Gaps = 35/689 (5%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSNQL+G +PS +ANL SLEYL+L+ N F+G FS LANLSKL+V +L +++ L+V
Sbjct: 357 LSSNQLTGNVPSALANLESLEYLSLFGNNFEG-FFSLGLLANLSKLKVLRLDSQSNSLEV 415
Query: 61 KIENCL-PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ E P FQL V++L +CNL +P+FLLHQ +L ++DLS N++ GNFP+WLLENNTKL
Sbjct: 416 EFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKL 475
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
EVL L NNSF+ FQL + H L+ L++S N F QN G +LP L C+N++ N F+GN
Sbjct: 476 EVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGN 535
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+ M+ + LD+S N+F G+L + + C++L L+LS+N G++FP N TRL
Sbjct: 536 LPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL 595
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
+ +DNN F+G I G L VLDISNN L+G IPSW+G L+ L +S N+LEG
Sbjct: 596 WVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEG 655
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEH---LYLQSNALGGSIPNTIFRGS 356
IP N++ LQ+LD+S N LSG + ++SS+ H L LQ+N L G IP+T+
Sbjct: 656 EIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLNV 713
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
+ LDLR+N G +P IN N+ LLLRGN G IPHQ C L + ++DLS+N+
Sbjct: 714 IV--LDLRNNRLSGNLPEFINTQ-NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKF 770
Query: 417 NGSIPACITNLLF----------WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466
NGSIP+C++N F + V SR+ G A Y+ S + +
Sbjct: 771 NGSIPSCLSNTSFGLRKGDDSYRYDVPSRF-----------GTAKDPVYFESLLMIDEFN 819
Query: 467 IDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL 526
+ + +Q ++ F TK+RY++Y G L + G+DLS N+L+G+IP E+ L + LNL
Sbjct: 820 MVNET-NSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNL 878
Query: 527 SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586
SHN LSG I ESFS LK +ESLDLS N+L G IP QLT++ SL+ F+VSYN+LSG +P
Sbjct: 879 SHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQG 938
Query: 587 EQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAE-DESAVDMVAFYWSFVASC 645
QF+TF+ SY GN LCG I+ SC + + G E DES VDM +FYWSFVA+
Sbjct: 939 RQFNTFETQSYFGNPLLCGKSIDISCAS--NNFHPTDNGVEADESTVDMESFYWSFVAAY 996
Query: 646 VTVMLGLLAILWVNPYWRRLWFYFIEECI 674
VT++LG+LA L + W R WFY ++ +
Sbjct: 997 VTILLGILASLSFDSPWSRAWFYIVDAFV 1025
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186495296|ref|NP_177557.2| receptor like protein 13 [Arabidopsis thaliana] gi|332197441|gb|AEE35562.1| receptor like protein 13 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1425), Expect = e-154, Method: Compositional matrix adjust.
Identities = 317/689 (46%), Positives = 440/689 (63%), Gaps = 35/689 (5%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSNQL+G +PS +ANL SLEYL+L+ N F+G FS LANLSKL+V +L +++ L+V
Sbjct: 289 LSSNQLTGNVPSALANLESLEYLSLFGNNFEG-FFSLGLLANLSKLKVLRLDSQSNSLEV 347
Query: 61 KIENCL-PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ E P FQL V++L +CNL +P+FLLHQ +L ++DLS N++ GNFP+WLLENNTKL
Sbjct: 348 EFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKL 407
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
EVL L NNSF+ FQL + H L+ L++S N F QN G +LP L C+N++ N F+GN
Sbjct: 408 EVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGN 467
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+ M+ + LD+S N+F G+L + + C++L L+LS+N G++FP N TRL
Sbjct: 468 LPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL 527
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
+ +DNN F+G I G L VLDISNN L+G IPSW+G L+ L +S N+LEG
Sbjct: 528 WVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEG 587
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEH---LYLQSNALGGSIPNTIFRGS 356
IP N++ LQ+LD+S N LSG + ++SS+ H L LQ+N L G IP+T+
Sbjct: 588 EIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLNV 645
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
+ LDLR+N G +P IN N+ LLLRGN G IPHQ C L + ++DLS+N+
Sbjct: 646 IV--LDLRNNRLSGNLPEFINTQ-NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKF 702
Query: 417 NGSIPACITNLLF----------WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466
NGSIP+C++N F + V SR+ G A Y+ S + +
Sbjct: 703 NGSIPSCLSNTSFGLRKGDDSYRYDVPSRF-----------GTAKDPVYFESLLMIDEFN 751
Query: 467 IDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL 526
+ + +Q ++ F TK+RY++Y G L + G+DLS N+L+G+IP E+ L + LNL
Sbjct: 752 MVNET-NSQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNL 810
Query: 527 SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586
SHN LSG I ESFS LK +ESLDLS N+L G IP QLT++ SL+ F+VSYN+LSG +P
Sbjct: 811 SHNNLSGVILESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQG 870
Query: 587 EQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAE-DESAVDMVAFYWSFVASC 645
QF+TF+ SY GN LCG I+ SC + + G E DES VDM +FYWSFVA+
Sbjct: 871 RQFNTFETQSYFGNPLLCGKSIDISCAS--NNFHPTDNGVEADESTVDMESFYWSFVAAY 928
Query: 646 VTVMLGLLAILWVNPYWRRLWFYFIEECI 674
VT++LG+LA L + W R WFY ++ +
Sbjct: 929 VTILLGILASLSFDSPWSRAWFYIVDAFV 957
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238478394|ref|NP_001154318.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189998|gb|AEE28119.1| receptor like protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/690 (45%), Positives = 442/690 (64%), Gaps = 23/690 (3%)
Query: 1 MSSNQLSGILPSVIANLTS-LEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQ 59
+S+NQL+G L S ++ L S LEYL+L DN F G F F SL N ++L VF+LS + ++Q
Sbjct: 388 LSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGS-FLFNSLVNQTRLTVFKLSSKVGVIQ 446
Query: 60 VKIENC-LPTFQLKVLSLPNCNLG-VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117
V+ E+ P FQLK+L L NC+LG + FL+HQ +L ++DLSHNKL G FPTWL++NNT
Sbjct: 447 VQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNT 506
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
+L+ + L+ NS + QL HGL LDISSN + +++G+V P L MN S N F+
Sbjct: 507 RLQTILLSGNSLTKLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQ 566
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237
G IPSSIG+M+ L++LD+SSN G+L ++ C+SL L+LSNN G+IF + NLT
Sbjct: 567 GTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLT 626
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297
L+ L+LD N+F+G +++GLL+S L +LDIS+N SG +P W+G S L L MS N L
Sbjct: 627 GLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQL 686
Query: 298 EGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357
+G P ++++DIS N+ SGS+ +N S+ L LQ+N G +P +F+ +
Sbjct: 687 KGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAG 745
Query: 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
LE LDLR+N F G+I + I++ S LR LLLR N Q IP ++CQL ++ ++DLSHN+
Sbjct: 746 LEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFR 805
Query: 418 GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI----RNYYNSTVQLSLDGI-DGRSL 472
G IP+C + + F G+ + +V D + I Y S + L DG+ +G
Sbjct: 806 GPIPSCFSKMSF---GAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLD-DGVRNGYQP 861
Query: 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532
V+F+TK+RYE+Y+G IL YM GLDLSSN+L+G+IP EI DLQNI LNLS N L+
Sbjct: 862 KPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLT 921
Query: 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
GSIP+S S LK +ESLDLS+NKL+G IPP L +L+SL ++SYN+LSG IP K TF
Sbjct: 922 GSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTF 981
Query: 593 DESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDE--------SAVDMVAFYWSFVAS 644
DE SY GN HLCG P NK+C + + E S + + +DMV FYW+ A
Sbjct: 982 DERSYIGNAHLCGLPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAV 1040
Query: 645 CVTVMLGLLAILWVNPYWRRLWFYFIEECI 674
++ L L A L+++ W R WFY ++ C+
Sbjct: 1041 YISTSLALFAFLYIDSRWSREWFYRVDLCV 1070
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238478392|ref|NP_001154317.1| receptor like protein 1 [Arabidopsis thaliana] gi|332189997|gb|AEE28118.1| receptor like protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 315/690 (45%), Positives = 442/690 (64%), Gaps = 23/690 (3%)
Query: 1 MSSNQLSGILPSVIANLTS-LEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQ 59
+S+NQL+G L S ++ L S LEYL+L DN F G F F SL N ++L VF+LS + ++Q
Sbjct: 218 LSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGS-FLFNSLVNQTRLTVFKLSSKVGVIQ 276
Query: 60 VKIENC-LPTFQLKVLSLPNCNLG-VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117
V+ E+ P FQLK+L L NC+LG + FL+HQ +L ++DLSHNKL G FPTWL++NNT
Sbjct: 277 VQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNT 336
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
+L+ + L+ NS + QL HGL LDISSN + +++G+V P L MN S N F+
Sbjct: 337 RLQTILLSGNSLTKLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQ 396
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237
G IPSSIG+M+ L++LD+SSN G+L ++ C+SL L+LSNN G+IF + NLT
Sbjct: 397 GTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLT 456
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297
L+ L+LD N+F+G +++GLL+S L +LDIS+N SG +P W+G S L L MS N L
Sbjct: 457 GLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQL 516
Query: 298 EGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357
+G P ++++DIS N+ SGS+ +N S+ L LQ+N G +P +F+ +
Sbjct: 517 KGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAG 575
Query: 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
LE LDLR+N F G+I + I++ S LR LLLR N Q IP ++CQL ++ ++DLSHN+
Sbjct: 576 LEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFR 635
Query: 418 GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI----RNYYNSTVQLSLDGI-DGRSL 472
G IP+C + + F G+ + +V D + I Y S + L DG+ +G
Sbjct: 636 GPIPSCFSKMSF---GAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLD-DGVRNGYQP 691
Query: 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532
V+F+TK+RYE+Y+G IL YM GLDLSSN+L+G+IP EI DLQNI LNLS N L+
Sbjct: 692 KPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLT 751
Query: 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
GSIP+S S LK +ESLDLS+NKL+G IPP L +L+SL ++SYN+LSG IP K TF
Sbjct: 752 GSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTF 811
Query: 593 DESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDE--------SAVDMVAFYWSFVAS 644
DE SY GN HLCG P NK+C + + E S + + +DMV FYW+ A
Sbjct: 812 DERSYIGNAHLCGLPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAV 870
Query: 645 CVTVMLGLLAILWVNPYWRRLWFYFIEECI 674
++ L L A L+++ W R WFY ++ C+
Sbjct: 871 YISTSLALFAFLYIDSRWSREWFYRVDLCV 900
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|240254032|ref|NP_172219.5| receptor like protein 1 [Arabidopsis thaliana] gi|332189996|gb|AEE28117.1| receptor like protein 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 550 bits (1417), Expect = e-153, Method: Compositional matrix adjust.
Identities = 315/690 (45%), Positives = 442/690 (64%), Gaps = 23/690 (3%)
Query: 1 MSSNQLSGILPSVIANLTS-LEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQ 59
+S+NQL+G L S ++ L S LEYL+L DN F G F F SL N ++L VF+LS + ++Q
Sbjct: 339 LSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGS-FLFNSLVNQTRLTVFKLSSKVGVIQ 397
Query: 60 VKIENC-LPTFQLKVLSLPNCNLG-VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117
V+ E+ P FQLK+L L NC+LG + FL+HQ +L ++DLSHNKL G FPTWL++NNT
Sbjct: 398 VQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNT 457
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
+L+ + L+ NS + QL HGL LDISSN + +++G+V P L MN S N F+
Sbjct: 458 RLQTILLSGNSLTKLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQ 517
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237
G IPSSIG+M+ L++LD+SSN G+L ++ C+SL L+LSNN G+IF + NLT
Sbjct: 518 GTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLT 577
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297
L+ L+LD N+F+G +++GLL+S L +LDIS+N SG +P W+G S L L MS N L
Sbjct: 578 GLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQL 637
Query: 298 EGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357
+G P ++++DIS N+ SGS+ +N S+ L LQ+N G +P +F+ +
Sbjct: 638 KGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAG 696
Query: 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
LE LDLR+N F G+I + I++ S LR LLLR N Q IP ++CQL ++ ++DLSHN+
Sbjct: 697 LEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFR 756
Query: 418 GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI----RNYYNSTVQLSLDGI-DGRSL 472
G IP+C + + F G+ + +V D + I Y S + L DG+ +G
Sbjct: 757 GPIPSCFSKMSF---GAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLD-DGVRNGYQP 812
Query: 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532
V+F+TK+RYE+Y+G IL YM GLDLSSN+L+G+IP EI DLQNI LNLS N L+
Sbjct: 813 KPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLT 872
Query: 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
GSIP+S S LK +ESLDLS+NKL+G IPP L +L+SL ++SYN+LSG IP K TF
Sbjct: 873 GSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTF 932
Query: 593 DESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDE--------SAVDMVAFYWSFVAS 644
DE SY GN HLCG P NK+C + + E S + + +DMV FYW+ A
Sbjct: 933 DERSYIGNAHLCGLPTNKNCIS-QRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAV 991
Query: 645 CVTVMLGLLAILWVNPYWRRLWFYFIEECI 674
++ L L A L+++ W R WFY ++ C+
Sbjct: 992 YISTSLALFAFLYIDSRWSREWFYRVDLCV 1021
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 688 | ||||||
| TAIR|locus:2019662 | 965 | RLP15 "AT1G74190" [Arabidopsis | 0.970 | 0.692 | 0.465 | 1.1e-153 | |
| TAIR|locus:2037313 | 1000 | RLP13 "AT1G74170" [Arabidopsis | 0.959 | 0.66 | 0.468 | 1.3e-153 | |
| TAIR|locus:2025012 | 1083 | RLP1 "AT1G07390" [Arabidopsis | 0.970 | 0.616 | 0.461 | 5.2e-152 | |
| TAIR|locus:2037308 | 976 | RLP14 "AT1G74180" [Arabidopsis | 0.969 | 0.683 | 0.464 | 1.9e-145 | |
| TAIR|locus:2101943 | 891 | RLP45 "AT3G53240" [Arabidopsis | 0.960 | 0.741 | 0.456 | 6.3e-140 | |
| TAIR|locus:2040075 | 935 | RLP21 "AT2G25470" [Arabidopsis | 0.966 | 0.711 | 0.415 | 4.8e-126 | |
| TAIR|locus:2155909 | 908 | RLP56 "AT5G49290" [Arabidopsis | 0.946 | 0.716 | 0.376 | 4.2e-95 | |
| TAIR|locus:2137296 | 811 | RLP46 "receptor like protein 4 | 0.925 | 0.785 | 0.315 | 2.1e-68 | |
| TAIR|locus:2120362 | 1249 | GSO1 "GASSHO1" [Arabidopsis th | 0.870 | 0.479 | 0.324 | 5.3e-67 | |
| TAIR|locus:2005498 | 1196 | BRI1 "BRASSINOSTEROID INSENSIT | 0.867 | 0.499 | 0.331 | 5e-65 |
| TAIR|locus:2019662 RLP15 "AT1G74190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1499 (532.7 bits), Expect = 1.1e-153, P = 1.1e-153
Identities = 321/689 (46%), Positives = 450/689 (65%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSN+L+G +PS + +L SLEYL+L+DN F+G FSF SLANLS L V +L ++ LQV
Sbjct: 275 LSSNKLTGTVPSSLGSLQSLEYLSLFDNDFEGS-FSFGSLANLSNLMVLKLCSKSSSLQV 333
Query: 61 KIENCL-PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
E+ P FQL V++L +CN+ +P+FLLHQ +L+++DLS N ++G P+WLL NNTKL
Sbjct: 334 LSESSWKPKFQLSVIALRSCNMEKVPHFLLHQKDLRHVDLSDNNISGKLPSWLLANNTKL 393
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
+VL L NN F+ FQ+ + H L+ LD+S+N+F P+N+G + P L +N SKN+F+ N
Sbjct: 394 KVLLLQNNLFTSFQIPKSAHNLLFLDVSANDFNHLFPENIGWIFPHLRYLNTSKNNFQEN 453
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+G M G++ +D+S N F G L +S V C+S+ L+LS+N G+IFP N T +
Sbjct: 454 LPSSLGNMNGIQYMDLSRNSFHGNLPRSFVNGCYSMAILKLSHNKLSGEIFPESTNFTNI 513
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
L L++DNN F+GKI GL L +LD+SNN+L+G IPSW+G +L L +S N L+G
Sbjct: 514 LGLFMDNNLFTGKIGQGLRSLINLELLDMSNNNLTGVIPSWIGELPSLTALLISDNFLKG 573
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALE 359
+IP+ N + LQ+LD+S N+LSG + + + L LQ N L G+IP+T+ +E
Sbjct: 574 DIPMSLFNKSSLQLLDLSANSLSGVIPPQHDSRNGVVLLLQDNKLSGTIPDTLLAN--VE 631
Query: 360 TLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 419
LDLR+N F G+IP IN N+ LLLRGN G IPHQLC L + ++DLS+NRLNG+
Sbjct: 632 ILDLRNNRFSGKIPEFINIQ-NISILLLRGNNFTGQIPHQLCGLSNIQLLDLSNNRLNGT 690
Query: 420 IPACITNLLFW--KVGSRYLSGF-VMVVMDL--GVA---DIRNYYNSTVQL-SLDGIDGR 470
IP+C++N F K + Y F + D+ G + D + N + SL +D
Sbjct: 691 IPSCLSNTSFGFGKECTSYDYDFGISFPSDVFNGFSLHQDFSSNKNGGIYFKSLLTLDPL 750
Query: 471 SL----GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL 526
S+ TQ ++ F TK+RY++Y G L + G+DLS N+L+G+IP E L + LNL
Sbjct: 751 SMDYKAATQTKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVEFGGLLELRALNL 810
Query: 527 SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586
SHN LSG IP+S S+++ +ES DLS N+L G+IP QLTEL SLS F VS+N+LSG IP
Sbjct: 811 SHNNLSGVIPKSISSMEKMESFDLSFNRLQGRIPSQLTELTSLSVFKVSHNNLSGVIPQG 870
Query: 587 EQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAE-DESAVDMVAFYWSFVASC 645
QF+TFD SY GN LCG P N+SC N E + G E DES +DMV+FY SF A+
Sbjct: 871 RQFNTFDAESYFGNRLLCGQPTNRSCNN--NSYEEADNGVEADESIIDMVSFYLSFAAAY 928
Query: 646 VTVMLGLLAILWVNPYWRRLWFYFIEECI 674
VT+++G+LA L + W R WFY ++ I
Sbjct: 929 VTILIGILASLSFDSPWSRFWFYKVDAFI 957
|
|
| TAIR|locus:2037313 RLP13 "AT1G74170" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 317/677 (46%), Positives = 438/677 (64%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSNQL+G +PS +ANL SLEYL+L+ N F+G FS LANLSKL+V +L +++ L+V
Sbjct: 289 LSSNQLTGNVPSALANLESLEYLSLFGNNFEG-FFSLGLLANLSKLKVLRLDSQSNSLEV 347
Query: 61 KIENCL-PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ E P FQL V++L +CNL +P+FLLHQ +L ++DLS N++ GNFP+WLLENNTKL
Sbjct: 348 EFETSWKPKFQLVVIALRSCNLEKVPHFLLHQKDLHHVDLSDNQIHGNFPSWLLENNTKL 407
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
EVL L NNSF+ FQL + H L+ L++S N F QN G +LP L C+N++ N F+GN
Sbjct: 408 EVLLLQNNSFTSFQLPKSAHNLLFLNVSVNKFNHLFLQNFGWILPHLVCVNLAYNGFQGN 467
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+ M+ + LD+S N+F G+L + + C++L L+LS+N G++FP N TRL
Sbjct: 468 LPSSLDNMKSIEFLDLSHNRFHGKLPRRFLKGCYNLTILKLSHNKLSGEVFPEAANFTRL 527
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
+ +DNN F+G I G L VLDISNN L+G IPSW+G L+ L +S N+LEG
Sbjct: 528 WVMSMDNNLFTGNIGKGFRSLPSLNVLDISNNKLTGVIPSWIGERQGLFALQLSNNMLEG 587
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEH---LYLQSNALGGSIPNTIFRGS 356
IP N++ LQ+LD+S N LSG + ++SS+ H L LQ+N L G IP+T+
Sbjct: 588 EIPTSLFNISYLQLLDLSSNRLSGDIPP--HVSSIYHGAVLLLQNNNLSGVIPDTLLLNV 645
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
+ LDLR+N G +P IN N+ LLLRGN G IPHQ C L + ++DLS+N+
Sbjct: 646 IV--LDLRNNRLSGNLPEFINTQ-NISILLLRGNNFTGQIPHQFCSLSNIQLLDLSNNKF 702
Query: 417 NGSIPACITNLLFW-KVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQ 475
NGSIP+C++N F + G S V G A Y+ S + + + + +Q
Sbjct: 703 NGSIPSCLSNTSFGLRKGDD--SYRYDVPSRFGTAKDPVYFESLLMIDEFNMVNET-NSQ 759
Query: 476 VEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSI 535
++ F TK+RY++Y G L + G+DLS N+L+G+IP E+ L + LNLSHN LSG I
Sbjct: 760 TKIEFATKHRYDAYMGGNLKLLFGMDLSENELSGEIPVELGGLVELEALNLSHNNLSGVI 819
Query: 536 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDES 595
ESFS LK +ESLDLS N+L G IP QLT++ SL+ F+VSYN+LSG +P QF+TF+
Sbjct: 820 LESFSGLKNVESLDLSFNRLQGPIPLQLTDMISLAVFNVSYNNLSGIVPQGRQFNTFETQ 879
Query: 596 SYRGNLHLCGPPINKSCTNLLELLETSSKGAE-DESAVDMVAFYWSFVASCVTVMLGLLA 654
SY GN LCG I+ SC + + G E DES VDM +FYWSFVA+ VT++LG+LA
Sbjct: 880 SYFGNPLLCGKSIDISCAS--NNFHPTDNGVEADESTVDMESFYWSFVAAYVTILLGILA 937
Query: 655 ILWVNPYWRRLWFYFIE 671
L + W R WFY ++
Sbjct: 938 SLSFDSPWSRAWFYIVD 954
|
|
| TAIR|locus:2025012 RLP1 "AT1G07390" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1483 (527.1 bits), Expect = 5.2e-152, P = 5.2e-152
Identities = 318/689 (46%), Positives = 447/689 (64%)
Query: 1 MSSNQLSGILPSVIANLTS-LEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQ 59
+S+NQL+G L S ++ L S LEYL+L DN F G F F SL N ++L VF+LS + ++Q
Sbjct: 388 LSNNQLNGNLSSFVSGLPSVLEYLSLLDNNFDGS-FLFNSLVNQTRLTVFKLSSKVGVIQ 446
Query: 60 VKIENC-LPTFQLKVLSLPNCNLG-VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117
V+ E+ P FQLK+L L NC+LG + FL+HQ +L ++DLSHNKL G FPTWL++NNT
Sbjct: 447 VQTESSWAPLFQLKMLYLSNCSLGSTMLGFLVHQRDLCFVDLSHNKLTGTFPTWLVKNNT 506
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
+L+ + L+ NS + QL HGL LDISSN + +++G+V P L MN S N F+
Sbjct: 507 RLQTILLSGNSLTKLQLPILVHGLQVLDISSNMIYDSIQEDIGMVFPNLRFMNFSSNHFQ 566
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237
G IPSSIG+M+ L++LD+SSN G+L ++ C+SL L+LSNN G+IF + NLT
Sbjct: 567 GTIPSSIGEMKSLQVLDMSSNGLYGQLPIMFLSGCYSLRVLKLSNNQLQGKIFSKHANLT 626
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297
L+ L+LD N+F+G +++GLL+S L +LDIS+N SG +P W+G S L L MS N L
Sbjct: 627 GLVGLFLDGNNFTGSLEEGLLKSKNLTLLDISDNRFSGMLPLWIGRISRLSYLYMSGNQL 686
Query: 298 EGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357
+G P ++++DIS N+ SGS+ +N S+ L LQ+N G +P +F+ +
Sbjct: 687 KGPFPF-LRQSPWVEVMDISHNSFSGSIPRNVNFPSLRELRLQNNEFTGLVPGNLFKAAG 745
Query: 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
LE LDLR+N F G+I + I++ S LR LLLR N Q IP ++CQL ++ ++DLSHN+
Sbjct: 746 LEVLDLRNNNFSGKILNTIDQTSKLRILLLRNNSFQTYIPGKICQLSEVGLLDLSHNQFR 805
Query: 418 GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI----RNYYNSTVQLSLDGI-DGRSL 472
G IP+C + + F G+ + +V D + I Y S + L DG+ +G
Sbjct: 806 GPIPSCFSKMSF---GAEQNDRTMSLVADFDFSYITFLPHCQYGSHLNLD-DGVRNGYQP 861
Query: 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532
V+F+TK+RYE+Y+G IL YM GLDLSSN+L+G+IP EI DLQNI LNLS N L+
Sbjct: 862 KPATVVDFLTKSRYEAYQGDILRYMHGLDLSSNELSGEIPIEIGDLQNIRSLNLSSNRLT 921
Query: 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
GSIP+S S LK +ESLDLS+NKL+G IPP L +L+SL ++SYN+LSG IP K TF
Sbjct: 922 GSIPDSISKLKGLESLDLSNNKLDGSIPPALADLNSLGYLNISYNNLSGEIPFKGHLVTF 981
Query: 593 DESSYRGNLHLCGPPINKSCTN--LLE--LLETSSKGAEDE---SAVDMVAFYWSFVASC 645
DE SY GN HLCG P NK+C + + E + T +K E+E + +DMV FYW+ A
Sbjct: 982 DERSYIGNAHLCGLPTNKNCISQRVPEPPSVSTHAKEEENEEEGNVIDMVWFYWTCAAVY 1041
Query: 646 VTVMLGLLAILWVNPYWRRLWFYFIEECI 674
++ L L A L+++ W R WFY ++ C+
Sbjct: 1042 ISTSLALFAFLYIDSRWSREWFYRVDLCV 1070
|
|
| TAIR|locus:2037308 RLP14 "AT1G74180" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1421 (505.3 bits), Expect = 1.9e-145, P = 1.9e-145
Identities = 318/685 (46%), Positives = 438/685 (63%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSNQLSG LP+ +L SLEYL+L DN F+G FS LANL+KL+VF+LS +++LQV
Sbjct: 291 LSSNQLSGNLPASFNSLESLEYLSLSDNNFEG-FFSLNPLANLTKLKVFRLSSTSEMLQV 349
Query: 61 KIE-NCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ E N LP FQL V +LP C+LG IPNFL++Q NL+ +DLS N+L+G+ PTWLLENN +L
Sbjct: 350 ETESNWLPKFQLTVAALPFCSLGKIPNFLVYQTNLRLVDLSSNRLSGDIPTWLLENNPEL 409
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
+VL L NNSF+ FQ+ + H L LD S+N+ TG LP N+G VLP+L MN S N F+GN
Sbjct: 410 KVLQLKNNSFTIFQIPTIVHKLQVLDFSANDITGVLPDNIGHVLPRLLHMNGSHNGFQGN 469
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+PSS+G+M + LD+S N F+GEL +S +T CFSL LQLS+N+F G I P LT L
Sbjct: 470 LPSSMGEMNDISFLDLSYNNFSGELPRSLLTGCFSLITLQLSHNSFSGPILPIQTRLTSL 529
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG-NFSNLYILSMSKNLLE 298
+ L + NN F+G+I GL L + D SNN L+G I S + + S+L +L +S NLLE
Sbjct: 530 IVLRMHNNLFTGEIGVGLRTLVNLSIFDASNNRLTGLISSSIPPDSSHLIMLLLSNNLLE 589
Query: 299 GNIPVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIFRGS 356
G +P + L LD+S N LSG + S++ ++ ++ ++L +N+ G +P T+ +
Sbjct: 590 GTLPPSLLAIHHLNFLDLSGNLLSGDLPSSVVNSMYGIK-IFLHNNSFTGPLPVTLLENA 648
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
+ LDLR+N G IP +N + LLLRGN L G IP +LC L + ++DLS N+L
Sbjct: 649 YI--LDLRNNKLSGSIPQFVNT-GKMITLLLRGNNLTGSIPRKLCDLTSIRLLDLSDNKL 705
Query: 417 NGSIPACITNLLFWKVGSRY-LSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQ 475
NG IP C+ N L ++G LSGF + G + +Y ST + + S
Sbjct: 706 NGVIPPCL-NHLSTELGEGIGLSGFSQEI-SFGDSLQMEFYRSTFLVDEFMLYYDSTYMI 763
Query: 476 VEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSI 535
VE+ F K RY+S+ G LDYM GLDLSSN+L+G IP+E+ DL + LNLS N LS SI
Sbjct: 764 VEIEFAAKQRYDSFSGGTLDYMYGLDLSSNELSGVIPAELGDLSKLRALNLSRNLLSSSI 823
Query: 536 PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDES 595
P +FS LK IESLDLS+N L G IP QLT L SL+ F+VS+N+LSG IP QF+TF+++
Sbjct: 824 PANFSKLKDIESLDLSYNMLQGNIPHQLTNLTSLAVFNVSFNNLSGIIPQGGQFNTFNDN 883
Query: 596 SYRGNLHLCGPPINKSCTNLLELLETSSKGAE------DESAVDMVAFYWSFVASCVTVM 649
SY GN LCG P ++SC E + G E DE+A+DMV YW+ ++ +
Sbjct: 884 SYLGNPLLCGTPTDRSCEGKKNTKEADNGGEEEEEDDDDEAAIDMVVLYWTTGSTYAIAL 943
Query: 650 LGLLAILWVNPYWRRLWFYFIEECI 674
+G+L ++ + WRR W ++ I
Sbjct: 944 IGILVLMCFDCPWRRTWLCIVDAFI 968
|
|
| TAIR|locus:2101943 RLP45 "AT3G53240" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1369 (487.0 bits), Expect = 6.3e-140, P = 6.3e-140
Identities = 314/688 (45%), Positives = 423/688 (61%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+SSN LSG +P I++ S+EYL+L DN F+G LFS + L++L+VF+LS + +LQ+
Sbjct: 209 LSSNHLSGKIPYFISDFKSMEYLSLLDNDFEG-LFSLGLITELTELKVFKLSSRSGMLQI 267
Query: 61 KIENCLPTFQ--LKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
N Q L + L +CNLG IP FL +Q L+ +DLS+N L+G FPTWLLENNT+
Sbjct: 268 VETNVSGGLQSQLSSIMLSHCNLGKIPGFLWYQQELRVIDLSNNILSGVFPTWLLENNTE 327
Query: 119 LEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
L+ L L NNSF L L LD+S NNF +LP+++G++L L +N+S N F G
Sbjct: 328 LQALLLQNNSFKTLTLPRTMRRLQILDLSVNNFNNQLPKDVGLILASLRHLNLSNNEFLG 387
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR 238
N+PSS+ +M+ + +D+S N F+G+L ++ T C+SL WL+LS+N F G I + T
Sbjct: 388 NMPSSMARMENIEFMDLSYNNFSGKLPRNLFTGCYSLSWLKLSHNRFSGPIIRKSSDETS 447
Query: 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298
L+ L +DNN F+GKI LL L V+D+SNN L+G IP W+GNF L +L +S N L+
Sbjct: 448 LITLIMDNNMFTGKIPRTLLNLRMLSVIDLSNNLLTGTIPRWLGNFF-LEVLRISNNRLQ 506
Query: 299 GNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLY---LQSNALGGSIPNTIFRG 355
G IP N+ L +LD+S N LSGS+ L SS ++ Y L +N L GSIP+T++ G
Sbjct: 507 GAIPPSLFNIPYLWLLDLSGNFLSGSL--PLRSSS-DYGYILDLHNNNLTGSIPDTLWYG 563
Query: 356 SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNR 415
L LDLR+N G IP ++ +LLR N L G IP +LC L + ++D +HNR
Sbjct: 564 --LRLLDLRNNKLSGNIP-LFRSTPSISVVLLRENNLTGKIPVELCGLSNVRMLDFAHNR 620
Query: 416 LNGSIPACITNLLFWKVG-SRYLSGFVMVVMDLGVADIRN--YYNSTVQLSLDGIDGRSL 472
LN SIP+C+TNL F G S S + + +I YY S + +D S+
Sbjct: 621 LNESIPSCVTNLSFGSGGHSNADSDWYPASLLSNFMEIYTEVYYESLIVSDRFSLD-YSV 679
Query: 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532
V+V F K RY+ Y L+ M GLDLSSN+L+G+IP E+ DL+ + LNLS N LS
Sbjct: 680 DFNVQVEFAVKQRYDLYMRGTLNQMFGLDLSSNELSGNIPEELGDLKRVRSLNLSRNSLS 739
Query: 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
GSIP SFSNL+ IESLDLS NKL+G IP QLT L SL F+VSYN+LSG IP +QF+TF
Sbjct: 740 GSIPGSFSNLRSIESLDLSFNKLHGTIPSQLTLLQSLVVFNVSYNNLSGVIPQGKQFNTF 799
Query: 593 DESSYRGNLHLCGPPINKSCTNLLELLETSSKGAE----DESAV-DMVAFYWSFVASCVT 647
E SY GN LCG P +SC T S G E DES + D+V +WS + VT
Sbjct: 800 GEKSYLGNFLLCGSPTKRSCGGT-----TISSGKEYEDDDESGLLDIVVLWWSLGTTYVT 854
Query: 648 VMLGLLAILWVNPYWRRLWFYFIEECID 675
VM+G L L + WRR WF ++ ID
Sbjct: 855 VMMGFLVFLCFDSPWRRAWFCLVDTFID 882
|
|
| TAIR|locus:2040075 RLP21 "AT2G25470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1238 (440.9 bits), Expect = 4.8e-126, P = 4.8e-126
Identities = 284/684 (41%), Positives = 403/684 (58%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRL-FSFCSLANLSKLEVFQLSMEADLLQ 59
+ N G +P + +L L L L N+ G L SF SL +L L + + +
Sbjct: 253 LKGNHFVGQIPLCLGSLKKLRVLDLSSNQLSGDLPSSFSSLESLEYLSLSDNNFDGSFSL 312
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ N L + V+ L C+L IP+FLL+Q L+ +DLS N L+GN PTWLL NN +L
Sbjct: 313 NPLTN-LTNLKFVVV-LRFCSLEKIPSFLLYQKKLRLVDLSSNNLSGNIPTWLLTNNPEL 370
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
EVL L NNSF+ F + + H L D S+NN GK P M LP L +N S N F+G
Sbjct: 371 EVLQLQNNSFTIFPIPTMVHNLQIFDFSANNI-GKFPDKMDHALPNLVRLNGSNNGFQGY 429
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
P+SIG+M+ + LD+S N F+G+L +S VT C S+ +L+LS+N F G+ P N L
Sbjct: 430 FPTSIGEMKNISFLDLSYNNFSGKLPRSFVTGCVSIMFLKLSHNKFSGRFLPRETNFPSL 489
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNL-YILSMSKNLLE 298
L +DNN F+G I GL S+ L +LD+SNN LSG IP W+ F L Y+L +S N LE
Sbjct: 490 DVLRMDNNLFTGNIGGGLSNSTMLRILDMSNNGLSGAIPRWLFEFPYLDYVL-ISNNFLE 548
Query: 299 GNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSAL 358
G IP + L LD+S N SG++ S ++ +++L +N G IP+T+ + ++
Sbjct: 549 GTIPPSLLGMPFLSFLDLSGNQFSGALPSHVDSELGIYMFLHNNNFTGPIPDTLLK--SV 606
Query: 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG 418
+ LDLR+N G IP Q ++ ++ LLL+GN L G IP +LC L + ++DLS N+LNG
Sbjct: 607 QILDLRNNKLSGSIP-QFDDTQSINILLLKGNNLTGSIPRELCDLSNVRLLDLSDNKLNG 665
Query: 419 SIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEV 478
IP+C++NL F ++ ++ + L + Y ST + +D RS + E+
Sbjct: 666 VIPSCLSNLSFGRLQEDAMALNIPPSF-LQTSLEMELYKSTFLVDKIEVD-RSTYQETEI 723
Query: 479 NFMTKNRYESYKGV------ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532
F K RY+SY G IL M G+DLS+N+L+G IP+E+ DL + LNLSHN L
Sbjct: 724 KFAAKQRYDSYSGRSEFSEGILRLMYGMDLSNNELSGVIPTELGDLLKLRTLNLSHNSLL 783
Query: 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
GSIP SFS L +ESLDLSHN L G IP L+ L SL+ FDVS N+LSG IP QF+TF
Sbjct: 784 GSIPSSFSKLIDVESLDLSHNMLQGSIPQLLSSLTSLAVFDVSSNNLSGIIPQGRQFNTF 843
Query: 593 DESSYRGNLHLCGPPINKSC-TNLL-ELLETSSKGAEDESAVDMVAFYWSFVASCVTVML 650
+E SY GN LCGPP ++SC TN E + + +D++A+DM+ FY+S + VT ++
Sbjct: 844 EEESYLGNPLLCGPPTSRSCETNKSPEEADNGQEEEDDKAAIDMMVFYFSTASIYVTALI 903
Query: 651 GLLAILWVNPYWRRLWFYFIEECI 674
G+L ++ + WRR W ++ I
Sbjct: 904 GVLVLMCFDCPWRRAWLRIVDAFI 927
|
|
| TAIR|locus:2155909 RLP56 "AT5G49290" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
Identities = 257/683 (37%), Positives = 370/683 (54%)
Query: 8 GILPSVIANLTSLEYLALYDNKFKGRLF-SFCSLANLSKLEVFQLSMEADLLQVKIENCL 66
G LP NL L +L L N+ G + SF SL +L L + S E + N L
Sbjct: 234 GQLPLCFGNLNKLRFLDLSSNQLTGNIPPSFSSLESLEYLSLSDNSFEGFFSLNPLTN-L 292
Query: 67 PTFQLKVLSLPNCNLGV-IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLT 125
++ + S + + V I + F L L L L P +L+ L V+ L+
Sbjct: 293 TKLKVFIFSSKDDMVQVKIESTWQPLFQLSVLVLRLCSLE-KIPNFLMYQKN-LHVVDLS 350
Query: 126 NNSFSGF---QLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPS 182
N SG L L L + +N+FT + Q M + L ++ S+N+ G P
Sbjct: 351 GNRISGIIPTWLLENNPELEVLQLKNNSFT--IFQ-MPTSVHNLQVLDFSENNIGGLFPD 407
Query: 183 SIGK-MQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT-RLL 240
+ G+ + L ++ S+N F G S + +++ +L LS NN G++ ++V+ L
Sbjct: 408 NFGRVLPNLVHMNGSNNGFQGNFPSS-MGEMYNISFLDLSYNNLSGELPQSFVSSCFSLS 466
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
L L +N FSG + L+VL I+NN +G I + +L IL MS N LEG
Sbjct: 467 ILQLSHNKFSGHFLPRQTNFTSLIVLRINNNLFTGKIGVGLLTLVDLCILDMSNNFLEGE 526
Query: 301 IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
+P L LD+S N LSG++ S ++L +V L+L +N G IP+T F GS ++
Sbjct: 527 LPPLLLVFEYLNFLDLSGNLLSGALPSHVSLDNV--LFLHNNNFTGPIPDT-FLGS-IQI 582
Query: 361 LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420
LDLR+N G IP Q + ++ LLLRGN L G IP LC+ K+ ++DLS N+LNG I
Sbjct: 583 LDLRNNKLSGNIP-QFVDTQDISFLLLRGNSLTGYIPSTLCEFSKMRLLDLSDNKLNGFI 641
Query: 421 PACITNLLFWKVGSRYLSGF-VMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVN 479
P+C NL F ++ + V V ++ + +Y ST + +D + +++V
Sbjct: 642 PSCFNNLSFGLARKEEITNYYVAVALE---SFYLGFYKSTFVVENFRLDYSNY-FEIDVK 697
Query: 480 FMTKNRYESYKGVI------LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSG 533
F TK RY+SY G L+ M GLDLSSN+L+G IP+E+ DL + LNLSHNFLS
Sbjct: 698 FATKQRYDSYIGAFQFSEGTLNSMYGLDLSSNELSGVIPAELGDLFKLRALNLSHNFLSS 757
Query: 534 SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFD 593
IP+SFS L+ IESLDLS+N L G IP QLT L SL+ F+VSYN+LSG IP +QF+TFD
Sbjct: 758 HIPDSFSKLQDIESLDLSYNMLQGSIPHQLTNLTSLAIFNVSYNNLSGIIPQGKQFNTFD 817
Query: 594 ESSYRGNLHLCGPPINKSCTNLLELLETSSKGAED--ESAVDMVAFYWSFVASCVTVMLG 651
E+SY GN LCGPP + SC E ++ G ED E A+DM+ FYWS + VT ++G
Sbjct: 818 ENSYLGNPLLCGPPTDTSCETKKNSEENANGGEEDDKEVAIDMLVFYWSTAGTYVTALIG 877
Query: 652 LLAILWVNPYWRRLWFYFIEECI 674
+L ++ V+ WRR W ++ I
Sbjct: 878 ILVLMCVDCSWRRAWLRLVDAFI 900
|
|
| TAIR|locus:2137296 RLP46 "receptor like protein 46" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 214/679 (31%), Positives = 331/679 (48%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N + G L I L +L+ L L +N G + S + +L +E+ L++ ++
Sbjct: 161 LSRNVIGGTLSGDIKELKNLQELILDENLIGGAIPS--EIGSL--VELLTLTLRQNMFNS 216
Query: 61 KIENCLPTF-QLKVLSLPNCNLGV-IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
I + + +LK + L N L IP+ + + NL L LS NKL+G P+ + N
Sbjct: 217 SIPSSVSRLTKLKTIDLQNNFLSSKIPDDIGNLVNLSTLSLSMNKLSGGIPS-SIHNLKN 275
Query: 119 LEVLYLTNNSFSGFQLTSAQ-HGLISLDISSNNFTGKLP-QNMGIVLPKLDCMNISKNS- 175
LE L L NN+ ++ +A GL L + KL N G V P+ ++S S
Sbjct: 276 LETLQLENNNGLSGEIPAAWLFGLQKLKVLRLEGNNKLQWNNNGYVFPQFKLTHLSLRSC 335
Query: 176 -FEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV 234
EGNIP + L LD+S N+ G + + + LS+N G + PN
Sbjct: 336 GLEGNIPDWLKNQTALVYLDLSINRLEGRFPKWLAD--LKIRNITLSDNRLTGSLPPNLF 393
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
L +L L N+FSG+I D + S++MVL +S N+ SG +P + L +L +SK
Sbjct: 394 QRPSLYYLVLSRNNFSGQIPD-TIGESQVMVLMLSENNFSGSVPKSITKIPFLKLLDLSK 452
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
N L G P +F + L+ LDIS N SG + + S L + N G P
Sbjct: 453 NRLSGEFP-RFRPESYLEWLDISSNEFSGDVPAYFG-GSTSMLLMSQNNFSGEFPQNFRN 510
Query: 355 GSALETLDLRDNYFFGRIPHQINE-HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
S L LDL DN G + I++ S++ L LR N L+G IP + L L ++DLS
Sbjct: 511 LSYLIRLDLHDNKISGTVASLISQLSSSVEVLSLRNNSLKGSIPEGISNLTSLKVLDLSE 570
Query: 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473
N L+G +P+ + NL + S S IR Y++S + I+ R +
Sbjct: 571 NNLDGYLPSSLGNLTCM-IKSPEPSAMT----------IRPYFSSYTDIP--NIE-RLIE 616
Query: 474 TQVEVNFMTKNRYESYKGVILD---YMAGL-DLSSNKLTGDIPSEICDLQNIHGLNLSHN 529
+ E F +++ K V+ D Y+ L DLS NKL G+IP+ + +L+++ LNLS+N
Sbjct: 617 IESEDIFSLVVNWKNSKQVLFDRNFYLYTLLDLSKNKLHGEIPTSLGNLKSLKVLNLSNN 676
Query: 530 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589
SG IP+SF +L+ +ESLDLSHN L G+IP L++L L+ D+ N L G IP+ Q
Sbjct: 677 EFSGLIPQSFGDLEKVESLDLSHNNLTGEIPKTLSKLSELNTLDLRNNKLKGRIPESPQL 736
Query: 590 STFDESS-YRGNLHLCGPPINKSCTNLLELLETSSKGAEDESAVDMVAFYWSFVASCVTV 648
+ + Y N +CG I C K ED+ + + F W+ A+ +
Sbjct: 737 DRLNNPNIYANNSGICGMQIQVPCFPTQTKQPAEEKEEEDKEEEETI-FSWN--AAAIGC 793
Query: 649 MLG-LLAILWVNPYWRRLW 666
G L+A+++++ + LW
Sbjct: 794 SCGFLIAVVFMS--YNELW 810
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| TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 5.3e-67, P = 5.3e-67
Identities = 205/632 (32%), Positives = 332/632 (52%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+++N L+G +PS + ++ L+YL+L N+ +G + SLA+L L+ LS A+ L
Sbjct: 246 LANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPK--SLADLGNLQTLDLS--ANNLTG 301
Query: 61 KI-ENCLPTFQLKVLSLPNCNL-GVIPNFLL-HQFNLKYLDLSHNKLAGNFPTWLLENNT 117
+I E QL L L N +L G +P + + NL+ L LS +L+G P L + +
Sbjct: 302 EIPEEFWNMSQLLDLVLANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQS 361
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLD---ISSNNFTGKLPQNMGIVLPKLDCMNISKN 174
L+ L L+NNS +G + A L+ L + +N G L ++ L L + + N
Sbjct: 362 -LKQLDLSNNSLAG-SIPEALFELVELTDLYLHNNTLEGTLSPSISN-LTNLQWLVLYHN 418
Query: 175 SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV 234
+ EG +P I ++ L +L + N+F+GE+ Q + NC SL+ + + N+F+G+I P+
Sbjct: 419 NLEGKLPKEISALRKLEVLFLYENRFSGEIPQE-IGNCTSLKMIDMFGNHFEGEIPPSIG 477
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
L L L+L N G + L +L +LD+++N LSG IPS G L L +
Sbjct: 478 RLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSIPSSFGFLKGLEQLMLYN 537
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
N L+GN+P +L L +++S N L+G++ SS + +N IP +
Sbjct: 538 NSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGN 597
Query: 355 GSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
L+ L L N G+IP + + L L + N L G IP QL +KL+ +DL++N
Sbjct: 598 SQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNN 657
Query: 415 RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG--IDG--- 469
L+G IP + L ++G LS V + ++ N V LSLDG ++G
Sbjct: 658 FLSGPIPPWLGKLS--QLGELKLSSNQFV--ESLPTELFNCTKLLV-LSLDGNSLNGSIP 712
Query: 470 RSLGTQVEVNFMT--KNRYE-SYKGVI--LDYMAGLDLSSNKLTGDIPSEICDLQNIHG- 523
+ +G +N + KN++ S + L + L LS N LTG+IP EI LQ++
Sbjct: 713 QEIGNLGALNVLNLDKNQFSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSA 772
Query: 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583
L+LS+N +G IP + L +E+LDLSHN+L G++P + ++ SL +VS+N+L G +
Sbjct: 773 LDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL 832
Query: 584 PDKEQFSTFDESSYRGNLHLCGPPINKSCTNL 615
K+QFS + S+ GN LCG P+++ C +
Sbjct: 833 --KKQFSRWPADSFLGNTGLCGSPLSR-CNRV 861
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| TAIR|locus:2005498 BRI1 "BRASSINOSTEROID INSENSITIVE 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 671 (241.3 bits), Expect = 5.0e-65, P = 5.0e-65
Identities = 207/624 (33%), Positives = 309/624 (49%)
Query: 1 MSSNQLSGILPSVIAN---LTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEAD 56
+SSN L P ++ L SLE L L N G + + +L+ +S
Sbjct: 155 VSSNTLD--FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 212
Query: 57 LLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116
V + C+ L V S N + G IP FL L++LD+S NKL+G+F +
Sbjct: 213 SGDVDVSRCVNLEFLDVSS-NNFSTG-IP-FLGDCSALQHLDISGNKLSGDFSR-AISTC 268
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
T+L++L +++N F G L L ++ N FTG++P + L +++S N F
Sbjct: 269 TELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 328
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNL 236
G +P G L L +SSN F+GEL + L+ L LS N F G++ + NL
Sbjct: 329 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 388
Query: 237 TR-LLFLYLDNNHFSGKIKDGLLRSSE--LMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293
+ LL L L +N+FSG I L ++ + L L + NN +G IP + N S L L +S
Sbjct: 389 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 448
Query: 294 KNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN-LSSVEHLYLQSNALGGSIPNTI 352
N L G IP +L+ L+ L + N L G + L + ++E L L N L G IP+ +
Sbjct: 449 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 508
Query: 353 FRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412
+ L + L +N G IP I NL L L N G IP +L R L +DL+
Sbjct: 509 SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLN 568
Query: 413 HNRLNGSIPACITNLLFWKVGSRYLSG--FVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470
N NG+IPA + K+ + +++G +V + D G+ + + + L GI
Sbjct: 569 TNLFNGTIPAAMFKQS-GKIAANFIAGKRYVYIKND-GMK--KECHGAGNLLEFQGIRSE 624
Query: 471 SLG---TQVEVNFMTKNRYESYKGVILDY---MAGLDLSSNKLTGDIPSEICDLQNIHGL 524
L T+ N +T Y + D M LD+S N L+G IP EI + + L
Sbjct: 625 QLNRLSTRNPCN-ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 683
Query: 525 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584
NL HN +SGSIP+ +L+ + LDLS NKL+G+IP ++ L L++ D+S N+LSGPIP
Sbjct: 684 NLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 743
Query: 585 DKEQFSTFDESSYRGNLHLCGPPI 608
+ QF TF + + N LCG P+
Sbjct: 744 EMGQFETFPPAKFLNNPGLCGYPL 767
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh2_kg.2__1688__AT1G74190.1 | annotation not avaliable (966 aa) | |||||||||
(Arabidopsis lyrata) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 688 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 6e-66 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-48 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 8e-35 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 9e-35 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 7e-17 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 6e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-07 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-06 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 9e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 2e-04 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-04 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 6e-04 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.001 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 6e-66
Identities = 173/623 (27%), Positives = 287/623 (46%), Gaps = 78/623 (12%)
Query: 65 CLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLY 123
C + ++ + L N+ G I + + ++ ++LS+N+L+G P + ++ L L
Sbjct: 65 CNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLN 124
Query: 124 LTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIV--------------------- 162
L+NN+F+G + L +LD+S+N +G++P ++G
Sbjct: 125 LSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL 184
Query: 163 --LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL 220
L L+ + ++ N G IP +G+M+ L+ + + N +GE+ + SL L L
Sbjct: 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDL 243
Query: 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSW 280
NN G I + NL L +L+L N SG I + +L+ LD+S+N LSG IP
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPEL 303
Query: 281 MGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL----NLSSVEH 336
+ NL IL + N G IPV +L LQ+L + N SG + L NL+ ++
Sbjct: 304 VIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLD- 362
Query: 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI 396
L +N L G IP + L L L N G IP + +LR + L+ N G +
Sbjct: 363 --LSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL 420
Query: 397 PHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYY 456
P + +L + +D+S+N L G I N W + S + ++ L RN +
Sbjct: 421 PSEFTKLPLVYFLDISNNNLQGRI-----NSRKWDMPS-------LQMLSLA----RNKF 464
Query: 457 NSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI------LDYMAGLDLSSNKLTGD 510
G+ ++E +++N++ G + L + L LS NKL+G+
Sbjct: 465 -------FGGLPDSFGSKRLENLDLSRNQFS---GAVPRKLGSLSELMQLKLSENKLSGE 514
Query: 511 IPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 570
IP E+ + + L+LSHN LSG IP SFS + ++ LDLS N+L+G+IP L + SL
Sbjct: 515 IPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLV 574
Query: 571 KFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDES 630
+ ++S+N L G +P F + S+ GN+ LCG ++ G
Sbjct: 575 QVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCG--------------GDTTSGLPPCK 620
Query: 631 AVDMVAFYWSFVASCVTVMLGLL 653
V +W ++ + L L
Sbjct: 621 RVRKTPSWWFYITCTLGAFLVLA 643
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 8e-48
Identities = 155/456 (33%), Positives = 227/456 (49%), Gaps = 49/456 (10%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S+N LSG +P+ I + +SL+ L L N G++ + SL NL+ LE L+ + Q+
Sbjct: 147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQI 204
Query: 61 KIENCLPTFQ-LKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
E L + LK + L NL G IP + +L +LDL +N L G P+ L N
Sbjct: 205 PRE--LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKN 261
Query: 119 LEVLYLTNNSFSG------FQLTSAQHGLISLDIS------------------------S 148
L+ L+L N SG F L LISLD+S S
Sbjct: 262 LQYLFLYQNKLSGPIPPSIFSLQK----LISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317
Query: 149 NNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSP 208
NNFTGK+P + LP+L + + N F G IP ++GK L +LD+S+N GE+ P
Sbjct: 318 NNFTGKIPVALT-SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI---P 373
Query: 209 VTNCFS--LEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVL 266
C S L L L +N+ +G+I + L + L +N FSG++ + + L
Sbjct: 374 EGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433
Query: 267 DISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI 326
DISNN+L G I S + +L +LS+++N G +P F + L+ LD+S N SG++
Sbjct: 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVP 492
Query: 327 STL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRAL 385
L +LS + L L N L G IP+ + L +LDL N G+IP +E L L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552
Query: 386 LLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421
L N L G IP L + L +++SHN L+GS+P
Sbjct: 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 8e-35
Identities = 115/342 (33%), Positives = 165/342 (48%), Gaps = 37/342 (10%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N LSG +P ++ L +LE L L+ N F G++ +L +L +L+V QL
Sbjct: 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPV--ALTSLPRLQVLQL--------- 339
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
N G IP L NL LDLS N L G P L ++ L
Sbjct: 340 ---------------WSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLF 383
Query: 121 VLYLTNNSFSGF--QLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
L L +NS G + A L + + N+F+G+LP LP + ++IS N+ +G
Sbjct: 384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQG 442
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR 238
I S M L++L ++ NKF G L S + LE L LS N F G + +L+
Sbjct: 443 RINSRKWDMPSLQMLSLARNKFFGGLPDSFGSK--RLENLDLSRNQFSGAVPRKLGSLSE 500
Query: 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298
L+ L L N SG+I D L +L+ LD+S+N LSG IP+ L L +S+N L
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560
Query: 299 GNIPVQFNNLAILQILDISENNLSGSMIST-----LNLSSVE 335
G IP N+ L ++IS N+L GS+ ST +N S+V
Sbjct: 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVA 602
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 9e-35
Identities = 123/374 (32%), Positives = 189/374 (50%), Gaps = 36/374 (9%)
Query: 236 LTRLLFLYLDNNHFSGKIKDGLLRSSELMVLD----ISNNHLSGHIPSWMG----NFSNL 287
+ L FL+L N + LL S + + D +SN + S + W G N S +
Sbjct: 13 IFMLFFLFL-NFSMLHAEELELLLSFKSSINDPLKYLSNWNSSADVCLWQGITCNNSSRV 71
Query: 288 YILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM---ISTLNLSSVEHLYLQSNAL 344
+ +S + G I L +Q +++S N LSG + I T + SS+ +L L +N
Sbjct: 72 VSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS-SSLRYLNLSNNNF 130
Query: 345 GGSIPNTIFRGSA--LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402
GSIP RGS LETLDL +N G IP+ I S+L+ L L GN L G IP+ L
Sbjct: 131 TGSIP----RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN 186
Query: 403 LRKLSIMDLSHNRLNGSIPA---CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNST 459
L L + L+ N+L G IP + +L + +G LSG + ++G N+ +
Sbjct: 187 LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG--EIPYEIGGLTSLNHLD-L 243
Query: 460 VQLSLDGIDGRSLG--TQVEVNFMTKNRYESYKGVI------LDYMAGLDLSSNKLTGDI 511
V +L G SLG ++ F+ +N+ G I L + LDLS N L+G+I
Sbjct: 244 VYNNLTGPIPSSLGNLKNLQYLFLYQNKL---SGPIPPSIFSLQKLISLDLSDNSLSGEI 300
Query: 512 PSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSK 571
P + LQN+ L+L N +G IP + ++L ++ L L NK +G+IP L + ++L+
Sbjct: 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTV 360
Query: 572 FDVSYNDLSGPIPD 585
D+S N+L+G IP+
Sbjct: 361 LDLSTNNLTGEIPE 374
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 7e-17
Identities = 36/86 (41%), Positives = 54/86 (62%)
Query: 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
GL L + L G IP++I L+++ +NLS N + G+IP S ++ +E LDLS+N NG
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIP 584
IP L +L SL +++ N LSG +P
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
I GL L + L G IP S L+ ++S++LS N + G IPP L + SL D+SYN +
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 581 GPIPD 585
G IP+
Sbjct: 480 GSIPE 484
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 29/88 (32%), Positives = 51/88 (57%)
Query: 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
L LDN G I + + + L +++S N + G+IP +G+ ++L +L +S N G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 302 PVQFNNLAILQILDISENNLSGSMISTL 329
P L L+IL+++ N+LSG + + L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 6e-09
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 8/113 (7%)
Query: 334 VEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ 393
++ L L + L G IPN I + L++++L N G IP + ++L L L N
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479
Query: 394 GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMD 446
G IP L QL L I++L+ N L+G +PA +G R L D
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAA--------LGGRLLHRASFNFTD 524
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 25/70 (35%), Positives = 44/70 (62%)
Query: 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 553
L ++ ++LS N + G+IP + + ++ L+LS+N +GSIPES L + L+L+ N
Sbjct: 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 554 KLNGQIPPQL 563
L+G++P L
Sbjct: 501 SLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 32/135 (23%), Positives = 52/135 (38%), Gaps = 47/135 (34%)
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM 325
L + N L G IP+ + +L +++S N + GNIP ++ L++LD+S N+ +GS
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS- 481
Query: 326 ISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRAL 385
IP + + ++LR L
Sbjct: 482 ----------------------------------------------IPESLGQLTSLRIL 495
Query: 386 LLRGNYLQGPIPHQL 400
L GN L G +P L
Sbjct: 496 NLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 4e-07
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 144 LDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGE 203
L + + G +P ++ L L +N+S NS GNIP S+G + L +LD+S N F G
Sbjct: 423 LGLDNQGLRGFIPNDIS-KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 204 LSQSPVTNCFSLEWLQLSNNNFDGQI 229
+ +S + SL L L+ N+ G++
Sbjct: 482 IPES-LGQLTSLRILNLNGNSLSGRV 506
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 4e-07
Identities = 81/362 (22%), Positives = 127/362 (35%), Gaps = 62/362 (17%)
Query: 16 NLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLS 75
NL L L L N+ + + L L+ L L ++ + L LK L
Sbjct: 91 NLLPLPSLDLNLNRLRSNISE---LLELTNLTSLDL-DNNNITDIPPLIGLLKSNLKELD 146
Query: 76 LPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT 135
L + + +P+ L + NLK LDLS N L+ LL N + L L L+ N S
Sbjct: 147 LSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDLSGNKIS----- 199
Query: 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDV 195
LP + +L L+ +++S NS + SS+ ++ L L++
Sbjct: 200 ------------------DLPPEIE-LLSALEELDLSNNSII-ELLSSLSNLKNLSGLEL 239
Query: 196 SSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD 255
S+NK E + N +LE L LSNN + +LT L L L N S +
Sbjct: 240 SNNKL--EDLPESIGNLSNLETLDLSNNQ--ISSISSLGSLTNLRELDLSGNSLSNALPL 295
Query: 256 GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILD 315
L +L++ ++ +IL +
Sbjct: 296 IAL-----------------------LLLLLELLLNLLLT----LKALELKLNSILLNNN 328
Query: 316 ISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQ 375
I N + S + L S+ +L+ NAL S N + L D
Sbjct: 329 ILSNGETSSPEALSILESLNNLWTLDNALDESNLNRYIVKNPNAIGSLLDLVKKHVNQLL 388
Query: 376 IN 377
Sbjct: 389 EK 390
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 29/85 (34%), Positives = 41/85 (48%)
Query: 218 LQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277
L L N G I + L L + L N G I L + L VLD+S N +G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 278 PSWMGNFSNLYILSMSKNLLEGNIP 302
P +G ++L IL+++ N L G +P
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVP 507
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-05
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 215 LEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS 274
L+ + LS N+ G I P+ ++T L L L N F+G I + L + + L +L+++ N LS
Sbjct: 444 LQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
Query: 275 GHIPSWMG 282
G +P+ +G
Sbjct: 504 GRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 45.0 bits (106), Expect = 9e-05
Identities = 80/310 (25%), Positives = 126/310 (40%), Gaps = 53/310 (17%)
Query: 301 IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
+P + L L +L S + + LNL + L L N L +I + + + L +
Sbjct: 62 LPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNI-SELLELTNLTS 120
Query: 361 LDLRDNYFFGRIPHQINE-HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 419
LDL +N IP I SNL+ L L N ++ +P L L L +DLS N L+
Sbjct: 121 LDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES-LPSPLRNLPNLKNLDLSFNDLS-D 177
Query: 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVN 479
+P ++NL + LS ++D+ L
Sbjct: 178 LPKLLSNLSNLN--NLDLS-------GNKISDLPPEIELLSALEE--------------- 213
Query: 480 FMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESF 539
LDLS+N + ++ S + +L+N+ GL LS+N L +PES
Sbjct: 214 --------------------LDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESI 251
Query: 540 SNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRG 599
NL +E+LDLS+N+++ L L +L + D+S N LS +P E
Sbjct: 252 GNLSNLETLDLSNNQIS--SISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNL 309
Query: 600 NLHLCGPPIN 609
L L +
Sbjct: 310 LLTLKALELK 319
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 1e-04
Identities = 28/57 (49%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 500 LDLSSNKLTGDIPSEIC-DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 555
LDLS+N+LT IP L N+ L+LS N L+ PE+FS L + SLDLS N L
Sbjct: 5 LDLSNNRLT-VIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 2e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579
L+LS+N L+ +F L ++ LDLS N L P + L SL D+S N+L
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 40/115 (34%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 74 LSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGF 132
L L N L G IPN + +L+ ++LS N + GN P L + T LEVL L+ NSF+G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGS 481
Query: 133 ------QLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
QLTS + L+++ N+ +G++P +G L N + N+ IP
Sbjct: 482 IPESLGQLTSLR----ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 6e-04
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNAL 344
NL L +S N L F L L++LD+S NNL+ L S+ L L N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 0.001
Identities = 65/235 (27%), Positives = 91/235 (38%), Gaps = 53/235 (22%)
Query: 187 MQGLRLLDVSSNKFAGELSQSP-VTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245
+ L LD+ S L S + N L L L+ N I + LT L L LD
Sbjct: 66 LSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISE-LLELTNLTSLDLD 124
Query: 246 NNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305
NN+ + L S L LD+S+N + +PS + N NL L +S N L ++P
Sbjct: 125 NNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL 182
Query: 306 NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365
+NL+ L LD+S N +S +P I SALE LDL +
Sbjct: 183 SNLSNLNNLDLSGNKIS------------------------DLPPEIELLSALEELDLSN 218
Query: 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420
N I S+L L LS ++LS+N+L
Sbjct: 219 N-------SIIELLSSLSNLK------------------NLSGLELSNNKLEDLP 248
|
Length = 394 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 688 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.91 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.89 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.86 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.79 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.78 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.67 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.6 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.57 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.41 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.36 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.27 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.26 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.2 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.18 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.18 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.17 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.16 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.13 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.12 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.1 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.08 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.99 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.94 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.87 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.86 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.81 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.75 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.73 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.61 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.54 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.52 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.51 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.35 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.28 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.25 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.25 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.17 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.13 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.12 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 98.08 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.04 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.0 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.85 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.84 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.73 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.7 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.68 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.63 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.48 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.05 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.91 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.82 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.78 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.63 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.54 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.93 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 95.55 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.36 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 93.54 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 93.5 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 92.84 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.36 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.36 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 90.65 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 90.65 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.99 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 86.63 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 84.77 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 84.3 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 81.11 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-64 Score=593.91 Aligned_cols=532 Identities=33% Similarity=0.495 Sum_probs=448.2
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
|++|+++|.++..|.++++|++|+|++|.+.+ .+|...+.++++|++|++++|.+.+.++. ..+++|++|++++|.
T Consensus 76 L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~-~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~ 151 (968)
T PLN00113 76 LSGKNISGKISSAIFRLPYIQTINLSNNQLSG-PIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNM 151 (968)
T ss_pred ecCCCccccCChHHhCCCCCCEEECCCCccCC-cCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCc
Confidence 46778888888888888888888888888876 67755566888888888888887665553 456788888888888
Q ss_pred C-CCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC--CCCCCcCEEEccCCCCCCCCCh
Q 005619 81 L-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT--SAQHGLISLDISSNNFTGKLPQ 157 (688)
Q Consensus 81 l-~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~ls~n~~~~~~~~ 157 (688)
+ +.+|..+..+++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+.... ..+++|++|++++|++++.+|.
T Consensus 152 ~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 230 (968)
T PLN00113 152 LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPY 230 (968)
T ss_pred ccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCCh
Confidence 8 4678888888888888888888887777765 4788888888888887754221 3677888888888888878887
Q ss_pred hhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCC
Q 005619 158 NMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237 (688)
Q Consensus 158 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~ 237 (688)
.+. .+++|++|++++|.+++..|..++++++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..|..+..++
T Consensus 231 ~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 231 EIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred hHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh-HhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 775 6888888888888888888888888888888888888887766655 35778888888888888877888888888
Q ss_pred CCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEcc
Q 005619 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDIS 317 (688)
Q Consensus 238 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 317 (688)
+|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..+..+++|+.|+++
T Consensus 309 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~ 388 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388 (968)
T ss_pred CCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCC
Q 005619 318 ENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI 396 (688)
Q Consensus 318 ~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 396 (688)
+|.+.+..+..+ .+++|+.|++++|.+++.+|..+..++.|+.|++++|.+++.++..+..+++|+.|++++|++.+.+
T Consensus 389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~ 468 (968)
T PLN00113 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGL 468 (968)
T ss_pred CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeec
Confidence 888887777665 7788888888888888888888888888888888888888888877788888888888888888777
Q ss_pred chhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcce
Q 005619 397 PHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQV 476 (688)
Q Consensus 397 ~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 476 (688)
|..+ ..++|+.|++++|++++.+|..+.+
T Consensus 469 p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~-------------------------------------------------- 497 (968)
T PLN00113 469 PDSF-GSKRLENLDLSRNQFSGAVPRKLGS-------------------------------------------------- 497 (968)
T ss_pred Cccc-ccccceEEECcCCccCCccChhhhh--------------------------------------------------
Confidence 7655 4578888888888888877776543
Q ss_pred EEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 477 EVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
++.|+.|+|++|.+++.+|..+..+++|+.|+|++|.+++.+|..|+++++|+.|||++|+++
T Consensus 498 -----------------l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 560 (968)
T PLN00113 498 -----------------LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLS 560 (968)
T ss_pred -----------------hhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCccc
Confidence 567899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCCC
Q 005619 557 GQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPP 607 (688)
Q Consensus 557 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p 607 (688)
+.+|..+.++++|++|++++|+++|.+|..+++.++...++.||+.+||.+
T Consensus 561 ~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~ 611 (968)
T PLN00113 561 GEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD 611 (968)
T ss_pred ccCChhHhcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence 999999999999999999999999999999999999999999999999865
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=542.28 Aligned_cols=513 Identities=30% Similarity=0.479 Sum_probs=456.9
Q ss_pred CCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC-CCcchhhhCCCCCC
Q 005619 17 LTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLK 95 (688)
Q Consensus 17 l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~~~~l~~L~ 95 (688)
..+++.|||++|.+++ .++ ..+..+++|+.|+|++|.+.+.++...+..+.+|++|++++|++ +.+|. ..+++|+
T Consensus 68 ~~~v~~L~L~~~~i~~-~~~-~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~ 143 (968)
T PLN00113 68 SSRVVSIDLSGKNISG-KIS-SAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLE 143 (968)
T ss_pred CCcEEEEEecCCCccc-cCC-hHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCC
Confidence 3579999999999987 555 57899999999999999988777776677899999999999999 56664 5678999
Q ss_pred EEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC--CCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccC
Q 005619 96 YLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT--SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173 (688)
Q Consensus 96 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (688)
+|++++|.+++.+|..+ .++++|++|++++|.+.+.... ..+++|++|++++|.+++.+|..+. .+++|++|++++
T Consensus 144 ~L~Ls~n~~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~ 221 (968)
T PLN00113 144 TLDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELG-QMKSLKWIYLGY 221 (968)
T ss_pred EEECcCCcccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHc-CcCCccEEECcC
Confidence 99999999988888775 5899999999999988754222 3778999999999999988888886 799999999999
Q ss_pred CCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcc
Q 005619 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKI 253 (688)
Q Consensus 174 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 253 (688)
|.+++.+|..++++++|++|++++|.+.+.+|.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 9999899999999999999999999998777765 578999999999999999888889999999999999999999889
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccC
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLS 332 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~ 332 (688)
|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+..+..+ .++
T Consensus 301 p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 301 PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 9889999999999999999999999999999999999999999998899999999999999999999988777666 788
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEcc
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 412 (688)
+|+.|++++|.+.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888899999999999
Q ss_pred CCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccc
Q 005619 413 HNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492 (688)
Q Consensus 413 ~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (688)
+|++.+.+|..+.
T Consensus 461 ~n~~~~~~p~~~~------------------------------------------------------------------- 473 (968)
T PLN00113 461 RNKFFGGLPDSFG------------------------------------------------------------------- 473 (968)
T ss_pred CceeeeecCcccc-------------------------------------------------------------------
Confidence 9999877775331
Q ss_pred ccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEE
Q 005619 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 493 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 572 (688)
.+.|+.||+++|++++.+|..|..+++|+.|+|++|++++.+|..++++++|++|+|++|++++.+|..+..+++|++|
T Consensus 474 -~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 552 (968)
T PLN00113 474 -SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552 (968)
T ss_pred -cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEE
Confidence 3568899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcCccCCCCC-cccCCcCccccCCCCCCC
Q 005619 573 DVSYNDLSGPIPDK-EQFSTFDESSYRGNLHLC 604 (688)
Q Consensus 573 ~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l~ 604 (688)
|+++|+++|.+|.. ..+..+......+|+..+
T Consensus 553 ~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~ 585 (968)
T PLN00113 553 DLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585 (968)
T ss_pred ECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence 99999999999975 345556666677776554
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=334.06 Aligned_cols=372 Identities=23% Similarity=0.270 Sum_probs=240.5
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
+.|++++|.+. .+....+.++++|+++++.+|.++ .+|...+...+|+.|+|.+|.|+ ++....+..++.|+.|||+
T Consensus 81 ~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhh
Confidence 34555555554 333333345566666666555555 34443333444666666666555 4444445555556666666
Q ss_pred cCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCC
Q 005619 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301 (688)
Q Consensus 222 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 301 (688)
.|.|+...-+.|..-.++++|+|++|.|+....+.|..+.+|..|.|++|+++...+..|.++++|+.|+|..|++...-
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 66655554455555556666666666666555556666666666666666666555555666666666666666665333
Q ss_pred cccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCC
Q 005619 302 PVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHS 380 (688)
Q Consensus 302 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 380 (688)
.-.|.++++|+.|.+..|.+.......| .+.++++|+|..|++...-..++++++.|+.|++++|.|....++.++.++
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftq 317 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQ 317 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcc
Confidence 4556666666666666666666555555 666666666666666655555666667777777777776666666666667
Q ss_pred CccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccce
Q 005619 381 NLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTV 460 (688)
Q Consensus 381 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (688)
+|+.|+|+.|+++...++.|..+..|+.|.|++|+++..--..+
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af------------------------------------ 361 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF------------------------------------ 361 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH------------------------------------
Confidence 77777777777766666666666777777777776641100000
Q ss_pred ecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCC---hhhhccCCCCeeeCCCCcCccCCCc
Q 005619 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP---SEICDLQNIHGLNLSHNFLSGSIPE 537 (688)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~ 537 (688)
.-+++|++|||++|.++..+. ..|.++++|+.|+|.+|++..+...
T Consensus 362 -------------------------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 362 -------------------------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred -------------------------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh
Confidence 114566777777777765543 4577888999999999999866667
Q ss_pred cccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCC
Q 005619 538 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 538 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 584 (688)
+|.++.+||.|||.+|.|..+-|.+|..| .|+.|-+..-.+-|.|.
T Consensus 411 Afsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq 456 (873)
T KOG4194|consen 411 AFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ 456 (873)
T ss_pred hhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence 89999999999999999998888999988 89999888888888773
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=330.60 Aligned_cols=473 Identities=26% Similarity=0.389 Sum_probs=363.1
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCCEE
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYL 97 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 97 (688)
..|+.|++++|.+.. +. ..+.++..|.++++++|......+ +++.+..++.++.++|++.++|+.+..+.+|+.+
T Consensus 45 v~l~~lils~N~l~~--l~-~dl~nL~~l~vl~~~~n~l~~lp~--aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV--LR-EDLKNLACLTVLNVHDNKLSQLPA--AIGELEALKSLNVSHNKLSELPEQIGSLISLVKL 119 (565)
T ss_pred cchhhhhhccCchhh--cc-HhhhcccceeEEEeccchhhhCCH--HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhh
Confidence 467888888888764 32 468888888888888887654333 3777788888888888888888888888888888
Q ss_pred ECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC-CCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCC
Q 005619 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS-AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 176 (688)
+.++|.+. .+|+.+. .+..|+.++..+|+++..+... .+.+|..+++.+|++. ..|+... .++.|++++...|.+
T Consensus 120 ~~s~n~~~-el~~~i~-~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i-~m~~L~~ld~~~N~L 195 (565)
T KOG0472|consen 120 DCSSNELK-ELPDSIG-RLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHI-AMKRLKHLDCNSNLL 195 (565)
T ss_pred hcccccee-ecCchHH-HHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHH-HHHHHHhcccchhhh
Confidence 88888887 6676664 7788888888888888754332 6677888888888888 6666655 388888888888877
Q ss_pred CcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCccccc
Q 005619 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDG 256 (688)
Q Consensus 177 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 256 (688)
+ .+|+.++.+.+|..|++..|++. .+|. |.+|..|++++++.|.|.....+....++++..||+.+|+++ ..|+.
T Consensus 196 ~-tlP~~lg~l~~L~~LyL~~Nki~-~lPe--f~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 196 E-TLPPELGGLESLELLYLRRNKIR-FLPE--FPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred h-cCChhhcchhhhHHHHhhhcccc-cCCC--CCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 6 67888888888888888888887 7773 678888888888888887544444557888888888888888 67888
Q ss_pred ccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCC---CCcEE-------EccCCc------
Q 005619 257 LLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLA---ILQIL-------DISENN------ 320 (688)
Q Consensus 257 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~---~L~~L-------~Ls~n~------ 320 (688)
+.-+.+|.+||+|+|.++ ..|..++++ +|+.|.+.+|.+..+ ...+-+.. -|++| .++..+
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~ 347 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETA 347 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCccccccc
Confidence 888888888888888888 567778888 888888888876522 11111110 01111 111110
Q ss_pred ---CccccccccccCccceEeeecCccccCCchhccCCCC---ccEEeCcCCcCCCcCchhhhcCCCccE-EeccCCcCC
Q 005619 321 ---LSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA---LETLDLRDNYFFGRIPHQINEHSNLRA-LLLRGNYLQ 393 (688)
Q Consensus 321 ---l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L~l~~n~l~~~~~~~~~~l~~L~~-L~L~~n~l~ 393 (688)
..+..+......+.+.|++++-+++ .+|...+.... .+..+++.|++ .++|..+..+..+.+ +.+++|.+
T Consensus 348 ~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL-~elPk~L~~lkelvT~l~lsnn~i- 424 (565)
T KOG0472|consen 348 MTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQL-CELPKRLVELKELVTDLVLSNNKI- 424 (565)
T ss_pred CCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchH-hhhhhhhHHHHHHHHHHHhhcCcc-
Confidence 0111122224567888999998888 66766555433 78999999999 567877777766554 44555555
Q ss_pred CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCC
Q 005619 394 GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473 (688)
Q Consensus 394 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 473 (688)
+.+|..++.+++|..|++++|.+. .+|..++.
T Consensus 425 sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~----------------------------------------------- 456 (565)
T KOG0472|consen 425 SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGS----------------------------------------------- 456 (565)
T ss_pred ccchHHHHhhhcceeeecccchhh-hcchhhhh-----------------------------------------------
Confidence 588999999999999999999886 77776654
Q ss_pred cceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCC
Q 005619 474 TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 553 (688)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 553 (688)
+..|+.||+|+|++. .+|..+..+..++.+-.++|++....|+.+++|.+|..|||.+|
T Consensus 457 --------------------lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN 515 (565)
T KOG0472|consen 457 --------------------LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN 515 (565)
T ss_pred --------------------hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC
Confidence 345899999999998 88999999999999999999999888888999999999999999
Q ss_pred cccccCCcCCCCCCCCCEEecCCCcCc
Q 005619 554 KLNGQIPPQLTELHSLSKFDVSYNDLS 580 (688)
Q Consensus 554 ~l~~~~p~~l~~l~~L~~L~ls~N~l~ 580 (688)
.+. .+|+.+++|++|++|++++|++.
T Consensus 516 dlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 516 DLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred chh-hCChhhccccceeEEEecCCccC
Confidence 999 78999999999999999999998
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=321.04 Aligned_cols=374 Identities=21% Similarity=0.233 Sum_probs=328.1
Q ss_pred CCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEe
Q 005619 164 PKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLY 243 (688)
Q Consensus 164 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~ 243 (688)
+.-+.|++++|++....+..|.++++|+.+++..|.++ .+|... ....+|+.|+|.+|.|+....+.+..++.|++||
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 45678999999999999999999999999999999998 888743 4455799999999999988888999999999999
Q ss_pred ccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 005619 244 LDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG 323 (688)
Q Consensus 244 L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 323 (688)
|+.|.|+......|..-.++++|+|++|.|+......|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|..
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 99999997766777777899999999999999999999999999999999999998889999999999999999999987
Q ss_pred cccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 324 SMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 324 ~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
.....| ++++|+.|.+..|.+...-...|..+.++++|+|..|+++..-..++.++++|+.|+++.|.|..+-++.+..
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 655555 9999999999999999777889999999999999999998888889999999999999999999888999999
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|+.|||++|+|+...+..+..
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~-------------------------------------------------------- 339 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRV-------------------------------------------------------- 339 (873)
T ss_pred cccceeEeccccccccCChhHHHH--------------------------------------------------------
Confidence 999999999999999655555543
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCc---cccCCCCCCeEeCCCCcccccC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPE---SFSNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~ 559 (688)
+..|++|+|++|.++......|..+++|+.|||++|.++..|.+ .|.+|++|+.|+|.+|++..+.
T Consensus 340 -----------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~ 408 (873)
T KOG4194|consen 340 -----------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP 408 (873)
T ss_pred -----------HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc
Confidence 56788999999999988889999999999999999999977654 5889999999999999999877
Q ss_pred CcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCC
Q 005619 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGP 606 (688)
Q Consensus 560 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~ 606 (688)
..+|..++.|+.|||.+|.+...-|..-.-..+.+..+..-..+|++
T Consensus 409 krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDC 455 (873)
T KOG4194|consen 409 KRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDC 455 (873)
T ss_pred hhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEec
Confidence 78999999999999999999876555411113333333333446654
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=322.36 Aligned_cols=468 Identities=24% Similarity=0.323 Sum_probs=381.1
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
|++|.++... ..+.++..|++|++++|.+.. .| .+++.+..++.++.++|.... ++ +.+..+.+|+.++++.|.
T Consensus 52 ls~N~l~~l~-~dl~nL~~l~vl~~~~n~l~~--lp-~aig~l~~l~~l~vs~n~ls~-lp-~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 52 LSHNDLEVLR-EDLKNLACLTVLNVHDNKLSQ--LP-AAIGELEALKSLNVSHNKLSE-LP-EQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hccCchhhcc-HhhhcccceeEEEeccchhhh--CC-HHHHHHHHHHHhhcccchHhh-cc-HHHhhhhhhhhhhccccc
Confidence 4677777664 468999999999999999984 66 578999999999999987643 33 247788899999999999
Q ss_pred CCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC-CCCCcCEEEccCCCCCCCCChhh
Q 005619 81 LGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS-AQHGLISLDISSNNFTGKLPQNM 159 (688)
Q Consensus 81 l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~ 159 (688)
+.++|+.++.+..|+.++..+|+++ ..|..++ .+.+|..+++.+|++...+... .++.|++||.-.|.++ .+|..+
T Consensus 126 ~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~-~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l 202 (565)
T KOG0472|consen 126 LKELPDSIGRLLDLEDLDATNNQIS-SLPEDMV-NLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPEL 202 (565)
T ss_pred eeecCchHHHHhhhhhhhccccccc-cCchHHH-HHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhh
Confidence 9999999999999999999999998 7888775 8999999999999998764332 6889999999999998 999999
Q ss_pred hhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCC
Q 005619 160 GIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239 (688)
Q Consensus 160 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L 239 (688)
+ .+.+|+.|++..|++. ..| .|.++..|++|.++.|.+. .+|.....+++++..||+..|+++ ..|+.+.-+++|
T Consensus 203 g-~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL 277 (565)
T KOG0472|consen 203 G-GLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSL 277 (565)
T ss_pred c-chhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhh
Confidence 8 7999999999999998 566 7999999999999999998 899999889999999999999998 468888889999
Q ss_pred CEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhC-----CcCCcE----EEcccccc----CCC-Cc---
Q 005619 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGN-----FSNLYI----LSMSKNLL----EGN-IP--- 302 (688)
Q Consensus 240 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~----L~l~~n~l----~~~-~~--- 302 (688)
+.||+++|.++ ..|..++++ .|+.|-+.+|.+..+-.+.+.. ++.|+. =-++...- ... .+
T Consensus 278 ~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~ 355 (565)
T KOG0472|consen 278 ERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESF 355 (565)
T ss_pred hhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcc
Confidence 99999999999 577788988 9999999999875221111110 111211 00111100 000 11
Q ss_pred ccccCCCCCcEEEccCCcCccccccccccC---ccceEeeecCccccCCchhccCCCCcc-EEeCcCCcCCCcCchhhhc
Q 005619 303 VQFNNLAILQILDISENNLSGSMISTLNLS---SVEHLYLQSNALGGSIPNTIFRGSALE-TLDLRDNYFFGRIPHQINE 378 (688)
Q Consensus 303 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~ 378 (688)
.....+.+.+.|++++-+++..+...|... -.+..+++.|++. ++|..+..+..+. .+++++|.+ +-+|..+..
T Consensus 356 ~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~i-sfv~~~l~~ 433 (565)
T KOG0472|consen 356 PDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKI-SFVPLELSQ 433 (565)
T ss_pred cchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCcc-ccchHHHHh
Confidence 122345678899999999998888777333 3789999999998 8888877765554 455666665 778889999
Q ss_pred CCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccccccccccc
Q 005619 379 HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNS 458 (688)
Q Consensus 379 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (688)
+++|+.|++++|.+. .+|..++.+..|+.||+|.|++. .+|.|+..+
T Consensus 434 l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~l------------------------------- 480 (565)
T KOG0472|consen 434 LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYEL------------------------------- 480 (565)
T ss_pred hhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhH-------------------------------
Confidence 999999999999998 78889999999999999999997 677776432
Q ss_pred ceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCcc
Q 005619 459 TVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPES 538 (688)
Q Consensus 459 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 538 (688)
..++.+-.++|++....|+.+.++.+|+.|||.+|.+. .+|..
T Consensus 481 ------------------------------------q~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 481 ------------------------------------QTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI 523 (565)
T ss_pred ------------------------------------HHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence 23444555678888777777999999999999999999 78999
Q ss_pred ccCCCCCCeEeCCCCccc
Q 005619 539 FSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 539 ~~~l~~L~~L~Ls~N~l~ 556 (688)
++++++|++|+|++|.++
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 999999999999999999
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-36 Score=314.15 Aligned_cols=472 Identities=28% Similarity=0.354 Sum_probs=285.6
Q ss_pred CchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhh
Q 005619 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLL 89 (688)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~ 89 (688)
+|..+-.-..++.|+++.|.+.. .|.+...+..+|+.||++.|... ..+. .+..+++|+.|+++.|.+..+|.+..
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~--~pl~~~~~~v~L~~l~lsnn~~~-~fp~-~it~l~~L~~ln~s~n~i~~vp~s~~ 88 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLS--RPLEFVEKRVKLKSLDLSNNQIS-SFPI-QITLLSHLRQLNLSRNYIRSVPSSCS 88 (1081)
T ss_pred cchhhccHHHHHhhhcccccccc--CchHHhhheeeeEEeeccccccc-cCCc-hhhhHHHHhhcccchhhHhhCchhhh
Confidence 34444444447777777776553 33445566666777777766543 2222 25556677777777777777777777
Q ss_pred CCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC-CCCCcCEEEccCCCCCCCCChhhhhcCCCCCE
Q 005619 90 HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS-AQHGLISLDISSNNFTGKLPQNMGIVLPKLDC 168 (688)
Q Consensus 90 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~ 168 (688)
+..+|+++.|.+|.+. ..|..+ ..+++|+.|+++.|.+...+..- .+..++.+..++|.-...++ -..++.
T Consensus 89 ~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg------~~~ik~ 160 (1081)
T KOG0618|consen 89 NMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLG------QTSIKK 160 (1081)
T ss_pred hhhcchhheeccchhh-cCchhH-HhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhc------cccchh
Confidence 7777777777777766 666654 46677777777777776654332 55556666666662111111 112566
Q ss_pred EEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCc
Q 005619 169 MNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNH 248 (688)
Q Consensus 169 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 248 (688)
+++..|.+.+.++..+..++. .|+|.+|.+. ... ...+.+|+.|....|.+.... ..-++++.|+.+.|.
T Consensus 161 ~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~ 230 (1081)
T KOG0618|consen 161 LDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNP 230 (1081)
T ss_pred hhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEE----ecCcchheeeeccCc
Confidence 666666666666666665555 5777777654 222 345666666666666655321 123567777777776
Q ss_pred CCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccc
Q 005619 249 FSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST 328 (688)
Q Consensus 249 l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 328 (688)
+....+. ....+|+++++++|+++ ..|+|++.+.+|+.++..+|++. .+|..+....+|+.|.+..|.+...++..
T Consensus 231 l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~l 306 (1081)
T KOG0618|consen 231 LTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFL 306 (1081)
T ss_pred ceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcc
Confidence 6632222 22346777777777776 34577777777777777777774 55666666677777777777776655554
Q ss_pred cccCccceEeeecCccccCCchhccCC--CCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCC
Q 005619 329 LNLSSVEHLYLQSNALGGSIPNTIFRG--SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406 (688)
Q Consensus 329 ~~~~~L~~L~L~~n~l~~~~~~~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 406 (688)
-..++|++|+|..|.+. ..|+.+..- ..|+.|+.+.|++.......=..++.|+.|.+.+|.+++..-..+.+..+|
T Consensus 307 e~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hL 385 (1081)
T KOG0618|consen 307 EGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHL 385 (1081)
T ss_pred cccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccce
Confidence 46677777777777776 455433322 225566666666643321122234567777777777776665566667777
Q ss_pred CEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccc
Q 005619 407 SIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRY 486 (688)
Q Consensus 407 ~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 486 (688)
+.|+|++|++. ++|...-
T Consensus 386 KVLhLsyNrL~-~fpas~~------------------------------------------------------------- 403 (1081)
T KOG0618|consen 386 KVLHLSYNRLN-SFPASKL------------------------------------------------------------- 403 (1081)
T ss_pred eeeeecccccc-cCCHHHH-------------------------------------------------------------
Confidence 77777777775 4444221
Q ss_pred ccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCC
Q 005619 487 ESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 566 (688)
Q Consensus 487 ~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 566 (688)
..+..|+.|+||+|.++ .+|..+..+..|++|...+|++. ..| .+..+++|+.+|+|.|+++...-..-..-
T Consensus 404 -----~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 404 -----RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred -----hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 11445666777777777 55677777777777777777776 555 66777777777777777764332222222
Q ss_pred CCCCEEecCCCc
Q 005619 567 HSLSKFDVSYND 578 (688)
Q Consensus 567 ~~L~~L~ls~N~ 578 (688)
++|++||+++|.
T Consensus 476 p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 476 PNLKYLDLSGNT 487 (1081)
T ss_pred cccceeeccCCc
Confidence 677777777775
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-36 Score=311.55 Aligned_cols=467 Identities=27% Similarity=0.343 Sum_probs=378.3
Q ss_pred hhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCC
Q 005619 12 SVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQ 91 (688)
Q Consensus 12 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l 91 (688)
++..+.-+|++||+++|.+.. .| ..+..+.+|+.|+++.|.+ ...+ .++.++.+|+++.|.+|.+..+|..+..+
T Consensus 39 ~~~~~~v~L~~l~lsnn~~~~--fp-~~it~l~~L~~ln~s~n~i-~~vp-~s~~~~~~l~~lnL~~n~l~~lP~~~~~l 113 (1081)
T KOG0618|consen 39 EFVEKRVKLKSLDLSNNQISS--FP-IQITLLSHLRQLNLSRNYI-RSVP-SSCSNMRNLQYLNLKNNRLQSLPASISEL 113 (1081)
T ss_pred HHhhheeeeEEeecccccccc--CC-chhhhHHHHhhcccchhhH-hhCc-hhhhhhhcchhheeccchhhcCchhHHhh
Confidence 345566669999999999985 55 3577889999999998764 3344 45888999999999999999999999999
Q ss_pred CCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCC-CCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEE
Q 005619 92 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN-SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMN 170 (688)
Q Consensus 92 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~ 170 (688)
++|++||+++|++. .+|..+ ..+..++.+..++| ++... .-..++.+++..|.+.+.++.++. .+.. .|+
T Consensus 114 knl~~LdlS~N~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~l----g~~~ik~~~l~~n~l~~~~~~~i~-~l~~--~ld 184 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFG-PIPLVI-EVLTAEEELAASNNEKIQRL----GQTSIKKLDLRLNVLGGSFLIDIY-NLTH--QLD 184 (1081)
T ss_pred hcccccccchhccC-CCchhH-HhhhHHHHHhhhcchhhhhh----ccccchhhhhhhhhcccchhcchh-hhhe--eee
Confidence 99999999999997 888876 48899999999999 22222 112288999999999888887775 3444 699
Q ss_pred ccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCC
Q 005619 171 ISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS 250 (688)
Q Consensus 171 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 250 (688)
|.+|.+. -..+..+.+|+.+....|.+. .+. ..-++|+.|+.++|.++...+. ..-.+|++++++.|+++
T Consensus 185 Lr~N~~~---~~dls~~~~l~~l~c~rn~ls-~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~ 254 (1081)
T KOG0618|consen 185 LRYNEME---VLDLSNLANLEVLHCERNQLS-ELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS 254 (1081)
T ss_pred cccchhh---hhhhhhccchhhhhhhhcccc-eEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhhh
Confidence 9999887 235678899999999999887 333 2346899999999998843222 22358999999999999
Q ss_pred CcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-
Q 005619 251 GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL- 329 (688)
Q Consensus 251 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~- 329 (688)
.+|+++..+.+|+.++..+|.++ ..|..+....+|+.|.+..|.++ -+|...+.+++|++|+|..|++...+...+
T Consensus 255 -~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~ 331 (1081)
T KOG0618|consen 255 -NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLA 331 (1081)
T ss_pred -cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHh
Confidence 56699999999999999999996 77888888999999999999998 566678889999999999999998777555
Q ss_pred -ccCccceEeeecCccccCCch-hccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCC
Q 005619 330 -NLSSVEHLYLQSNALGGSIPN-TIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLS 407 (688)
Q Consensus 330 -~~~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 407 (688)
-..+|+.++.+.|++. ..|. .-...+.|+.|.+.+|.+++..-..+.+...|+.|+|++|++.......+.++..|+
T Consensus 332 v~~~~l~~ln~s~n~l~-~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 332 VLNASLNTLNVSSNKLS-TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhhHHHHHHhhhhcccc-ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 2334788888888887 3442 223347899999999999988777889999999999999999966667789999999
Q ss_pred EEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccc
Q 005619 408 IMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYE 487 (688)
Q Consensus 408 ~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (688)
.|++|+|+++ .+|.++.++
T Consensus 411 eL~LSGNkL~-~Lp~tva~~------------------------------------------------------------ 429 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANL------------------------------------------------------------ 429 (1081)
T ss_pred HHhcccchhh-hhhHHHHhh------------------------------------------------------------
Confidence 9999999998 788877653
Q ss_pred cccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccC-CCccccCCCCCCeEeCCCCcccccCCcCCCCC
Q 005619 488 SYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 566 (688)
Q Consensus 488 ~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l 566 (688)
..|++|...+|++. ..| ++..++.|+.+|+|.|+++.. +|..... ++|++|||++|.-.......|..+
T Consensus 430 -------~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l 499 (1081)
T KOG0618|consen 430 -------GRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVL 499 (1081)
T ss_pred -------hhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHh
Confidence 45777888888887 667 899999999999999999854 3444333 899999999998555666777788
Q ss_pred CCCCEEecCCC
Q 005619 567 HSLSKFDVSYN 577 (688)
Q Consensus 567 ~~L~~L~ls~N 577 (688)
+++...++.-|
T Consensus 500 ~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 500 KSLSQMDITLN 510 (1081)
T ss_pred hhhhheecccC
Confidence 88888888777
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=291.80 Aligned_cols=321 Identities=26% Similarity=0.359 Sum_probs=242.6
Q ss_pred CCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEc
Q 005619 67 PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDI 146 (688)
Q Consensus 67 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l 146 (688)
.+++++.|.|...++..+|+.++.+.+|++|.+++|++. .+...+ ..++.|+.+.+.+|++...
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vhGEL-s~Lp~LRsv~~R~N~LKns-------------- 93 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVHGEL-SDLPRLRSVIVRDNNLKNS-------------- 93 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhhhhh-ccchhhHHHhhhccccccC--------------
Confidence 344455555666677788888888888888888888886 443333 4677777777777776653
Q ss_pred cCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC
Q 005619 147 SSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226 (688)
Q Consensus 147 s~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 226 (688)
-+|..+| .+..|..|+||+|++. ..|..+..-+++-+|+|++|+|. .||...|.++..|-.|||++|++.
T Consensus 94 -------GiP~diF-~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe 163 (1255)
T KOG0444|consen 94 -------GIPTDIF-RLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE 163 (1255)
T ss_pred -------CCCchhc-ccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh
Confidence 5777777 6888888888888888 57888888888888999999887 888888888888888999988887
Q ss_pred CcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCC-CCCchhhhCCcCCcEEEccccccCCCCcccc
Q 005619 227 GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS-GHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305 (688)
Q Consensus 227 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 305 (688)
..|+....+..|++|+|++|.+.......+..+++|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|+++
T Consensus 164 -~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecl 241 (1255)
T KOG0444|consen 164 -MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECL 241 (1255)
T ss_pred -hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHH
Confidence 45777788888888888888776544444555677888888876544 456777888888888888888887 778888
Q ss_pred cCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCC-cCchhhhcCCCccE
Q 005619 306 NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG-RIPHQINEHSNLRA 384 (688)
Q Consensus 306 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~ 384 (688)
..+++|+.|+||+|+++......-...+|++|+++.|+++ .+|..++.++.|+.|.+.+|+++- -+|+.++.+.+|+.
T Consensus 242 y~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Lev 320 (1255)
T KOG0444|consen 242 YKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEV 320 (1255)
T ss_pred hhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHH
Confidence 8888888888888888765444335567777777777777 777777777777777777777643 35677777777777
Q ss_pred EeccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 385 LLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 385 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
+...+|.+. ..|+.+|.|..|+.|.|++|++.
T Consensus 321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi 352 (1255)
T KOG0444|consen 321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI 352 (1255)
T ss_pred HHhhccccc-cCchhhhhhHHHHHhccccccee
Confidence 777777775 67777777777777777777664
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-34 Score=285.75 Aligned_cols=383 Identities=23% Similarity=0.289 Sum_probs=314.3
Q ss_pred CCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCC
Q 005619 16 NLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLK 95 (688)
Q Consensus 16 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~ 95 (688)
-++..+-.|+++|.++|..+| .....+++++.|.|....+ ..+|. .++.+.+|++|.+++|++.++-..+..++.|+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP-~~v~qMt~~~WLkLnrt~L-~~vPe-EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFP-HDVEQMTQMTWLKLNRTKL-EQVPE-ELSRLQKLEHLSMAHNQLISVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCcCCCCcCc-hhHHHhhheeEEEechhhh-hhChH-HHHHHhhhhhhhhhhhhhHhhhhhhccchhhH
Confidence 355677789999999876788 6788899999998876543 23333 37778889999999999988877788899999
Q ss_pred EEECCCCcCCC-CCchHHhhCCCCCcEEEccCCCCCCCCCC-CCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccC
Q 005619 96 YLDLSHNKLAG-NFPTWLLENNTKLEVLYLTNNSFSGFQLT-SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173 (688)
Q Consensus 96 ~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (688)
.+++..|+++. -+|..+| ++..|..|||++|+++..+-. ..-+++-.|+||+|+|. .||..++.+++.|-.|+||+
T Consensus 82 sv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhcccc
Confidence 99999998863 4788887 889999999999998875432 25577889999999998 99999999999999999999
Q ss_pred CCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC-CcCcccccCCCCCCEEeccCCcCCCc
Q 005619 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD-GQIFPNYVNLTRLLFLYLDNNHFSGK 252 (688)
Q Consensus 174 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 252 (688)
|++. .+|+.+..+..|++|+|++|.+. ......+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. .
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~ 236 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-I 236 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-c
Confidence 9998 67888999999999999999876 333333445678888899887544 467888999999999999999998 8
Q ss_pred ccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc--cccccccc
Q 005619 253 IKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS--GSMISTLN 330 (688)
Q Consensus 253 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~--~~~~~~~~ 330 (688)
.|+.+..+++|+.|+||+|.++ ..........+|++|+++.|+++ .+|.+++.+++|+.|.+.+|+++ |++.....
T Consensus 237 vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK 314 (1255)
T KOG0444|consen 237 VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK 314 (1255)
T ss_pred chHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh
Confidence 8999999999999999999998 44445566688999999999998 78999999999999999999876 44444448
Q ss_pred cCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEE
Q 005619 331 LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMD 410 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 410 (688)
+.+|+++...+|.+. ..|+.++.|..|+.|.|+.|++ -.+|+.+.-++.|+.|+++.|.--...|..-..-++|+.-+
T Consensus 315 L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL-iTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYN 392 (1255)
T KOG0444|consen 315 LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL-ITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYN 392 (1255)
T ss_pred hhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce-eechhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeee
Confidence 899999999999998 8999999999999999999998 45789999999999999999976645554332224444433
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-27 Score=227.16 Aligned_cols=408 Identities=18% Similarity=0.184 Sum_probs=267.2
Q ss_pred CCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccC-CcCccccCchhhcCCCCCC
Q 005619 138 QHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSS-NKFAGELSQSPVTNCFSLE 216 (688)
Q Consensus 138 ~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~ 216 (688)
.+.-.+++|..|+|+ .+|...|+.+++|+.|||++|.|+.+.|++|.+++++..|-+.+ |+|+ .+|...|.++.+++
T Consensus 66 P~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ 143 (498)
T ss_pred CCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence 345677888888888 89999999999999999999999999999999999988887766 8888 89999999999999
Q ss_pred EEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCC------------CCCchhhhCC
Q 005619 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS------------GHIPSWMGNF 284 (688)
Q Consensus 217 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~------------~~~~~~~~~l 284 (688)
.|.+.-|++.......|..++++..|.+.+|.+..+-...+..+..++.+.+..|.+. ...|..++..
T Consensus 144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 9999999999888889999999999999999988555557888899999999888732 1122233333
Q ss_pred cCCcEEEccccccCCCCcccccCC-CCCcEEEccCCcCccccc-ccc-ccCccceEeeecCccccCCchhccCCCCccEE
Q 005619 285 SNLYILSMSKNLLEGNIPVQFNNL-AILQILDISENNLSGSMI-STL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETL 361 (688)
Q Consensus 285 ~~L~~L~l~~n~l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~-~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 361 (688)
....-..+.+.++..+.+..|... ..+..--.+.+...+..| ..| .+++|+.|++++|++++.-+.+|.....+++|
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL 303 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL 303 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence 334444444555544444433221 111111122232333333 334 78889999999999988888888888889999
Q ss_pred eCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccce
Q 005619 362 DLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFV 441 (688)
Q Consensus 362 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~ 441 (688)
.|..|++...-...|.++..|+.|+|.+|+|+...|.+|..+..|..|.+-.|++....- +..+..|..... ..+.+
T Consensus 304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~--l~wl~~Wlr~~~-~~~~~ 380 (498)
T KOG4237|consen 304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCR--LAWLGEWLRKKS-VVGNP 380 (498)
T ss_pred hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccc--hHHHHHHHhhCC-CCCCC
Confidence 999998876666778888999999999999988888889889999999998888753221 111111211111 01100
Q ss_pred -------eEEecccccccccccc-cceecccCCCCCCCCCcceEEEeeeccccccccccccccccE-EEccCCcccccCC
Q 005619 442 -------MVVMDLGVADIRNYYN-STVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG-LDLSSNKLTGDIP 512 (688)
Q Consensus 442 -------~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~-LdLs~N~l~~~~p 512 (688)
...++++......... ...+.........+ ...+-+.+ ...|+..++ .+|
T Consensus 381 ~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP--------------------~~c~c~~tVvRcSnk~lk-~lp 439 (498)
T KOG4237|consen 381 RCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCP--------------------PPCTCLDTVVRCSNKLLK-LLP 439 (498)
T ss_pred CCCCCchhccccchhccccccccCCccccCCCCCCCCC--------------------CCcchhhhhHhhcccchh-hcC
Confidence 0111111110000000 00000000000000 00111211 233444443 333
Q ss_pred hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCC
Q 005619 513 SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 577 (688)
..+ -..-+.|++.+|.++ .+|.. .+++| .+|+|+|+++...-..|.++++|.+|-+|+|
T Consensus 440 ~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 440 RGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 322 124556778888887 56665 56677 7888888887666677888888888888876
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-23 Score=242.96 Aligned_cols=341 Identities=21% Similarity=0.207 Sum_probs=199.6
Q ss_pred CChhhhhcCCCCCEEEccCCC------CCcccchhhhcCC-CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCC
Q 005619 155 LPQNMGIVLPKLDCMNISKNS------FEGNIPSSIGKMQ-GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG 227 (688)
Q Consensus 155 ~~~~~~~~l~~L~~L~l~~n~------l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 227 (688)
+....+..+++|+.|.+..+. +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|+.|++.+|.+..
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLEK 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCccccc
Confidence 334445567777777665442 2223455555543 4777777777665 566543 35677777777776653
Q ss_pred cCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccC
Q 005619 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNN 307 (688)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 307 (688)
.+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ +
T Consensus 626 -L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 626 -LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred -cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 455566677777777776654434443 5666777777777776555667777777777777777764444555444 5
Q ss_pred CCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCC-------CcCchhhhcCC
Q 005619 308 LAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFF-------GRIPHQINEHS 380 (688)
Q Consensus 308 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-------~~~~~~~~~l~ 380 (688)
+++|+.|++++|......+. ..++|++|++++|.+. .+|..+ .+++|+.|++.++... ...+......+
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 67777777777754433332 2356777777777765 455443 4566676766653321 11122223345
Q ss_pred CccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccce
Q 005619 381 NLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTV 460 (688)
Q Consensus 381 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (688)
+|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 67777777776666677777777777777777765444444321
Q ss_pred ecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCcccc
Q 005619 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFS 540 (688)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 540 (688)
.+++|+.|++++|.....+|.. .++|+.|+|++|.++ .+|..++
T Consensus 823 --------------------------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~ 866 (1153)
T PLN03210 823 --------------------------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIE 866 (1153)
T ss_pred --------------------------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHh
Confidence 0345555666655443333332 245556666666665 4555566
Q ss_pred CCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCC
Q 005619 541 NLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 541 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 577 (688)
.+++|+.|+|++|+--..+|..+..+++|+.+++++|
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 6666666666653322234555555566666666555
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=237.14 Aligned_cols=337 Identities=20% Similarity=0.227 Sum_probs=187.8
Q ss_pred hHHhhCCCCCcEEEccCCCCCCC-----CCCC----CCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCccc
Q 005619 110 TWLLENNTKLEVLYLTNNSFSGF-----QLTS----AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180 (688)
Q Consensus 110 ~~~~~~l~~L~~L~L~~n~l~~~-----~~~~----~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 180 (688)
...|.++++|+.|.+..+..... ..+. ...+|+.|.+.++.+. .+|..+ ...+|++|++.++.+. .+
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~L 626 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-KL 626 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-cc
Confidence 34455667777766655432210 0111 1234555555555544 444443 2445555555555544 23
Q ss_pred chhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCC
Q 005619 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS 260 (688)
Q Consensus 181 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 260 (688)
+..+..+++|+.|+++++.....+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c------------- 691 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC------------- 691 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC-------------
Confidence 44444555555555554432223432 234445555555544433344444444455555555444
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeee
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQ 340 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~ 340 (688)
.....+|..+ ++++|+.|++++|...+..|.. ..+|++|++++|.+... |....+++|++|++.
T Consensus 692 -----------~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~l-P~~~~l~~L~~L~l~ 755 (1153)
T PLN03210 692 -----------ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEF-PSNLRLENLDELILC 755 (1153)
T ss_pred -----------CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccc-ccccccccccccccc
Confidence 3322333322 3444555555444332222221 23445555555554432 222234455555554
Q ss_pred cCccc-------cCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccC
Q 005619 341 SNALG-------GSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413 (688)
Q Consensus 341 ~n~l~-------~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 413 (688)
++... ...+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++
T Consensus 756 ~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~ 834 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG 834 (1153)
T ss_pred ccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCC
Confidence 43211 1111122234678888888887777788888888888888888876555677665 688888888888
Q ss_pred CcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccc
Q 005619 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493 (688)
Q Consensus 414 n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (688)
|.....+|..
T Consensus 835 c~~L~~~p~~---------------------------------------------------------------------- 844 (1153)
T PLN03210 835 CSRLRTFPDI---------------------------------------------------------------------- 844 (1153)
T ss_pred CCcccccccc----------------------------------------------------------------------
Confidence 7643333221
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCC-cCccCCCccccCCCCCCeEeCCCCc
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHN-FLSGSIPESFSNLKMIESLDLSHNK 554 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~ 554 (688)
..+++.|+|++|.++ .+|..+..+++|+.|+|++| +++ .+|..+..+++|+.+++++|.
T Consensus 845 ~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 845 STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCc
Confidence 245778888888887 67888888889999999884 455 577778888888888888874
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-25 Score=214.98 Aligned_cols=392 Identities=18% Similarity=0.219 Sum_probs=262.8
Q ss_pred EEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEccc
Q 005619 143 SLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222 (688)
Q Consensus 143 ~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 222 (688)
..+-++-.++ ++|..+. +.-..++|..|.|+.+.+.+|+.+++|+.|||++|.|+ .|.+.+|.++.++.+|-+.+
T Consensus 50 ~VdCr~~GL~-eVP~~LP---~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg 124 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANLP---PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYG 124 (498)
T ss_pred eEEccCCCcc-cCcccCC---CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhc
Confidence 3445555555 7777653 56778889999998888888889999999999999888 77777888888887776665
Q ss_pred -CcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC---
Q 005619 223 -NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE--- 298 (688)
Q Consensus 223 -n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--- 298 (688)
|+|+......|.++..++.|.+.-|++.-...+.|..++++..|.+..|.+..+.-..|..+..++.+.+..|.+.
T Consensus 125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 8888777778888888888888888888777888888888888888888887554557788888888888777621
Q ss_pred ---------CCCcccccCCCCCcEEEccCCcCccccccccccC--ccceEeeecCccccCCc-hhccCCCCccEEeCcCC
Q 005619 299 ---------GNIPVQFNNLAILQILDISENNLSGSMISTLNLS--SVEHLYLQSNALGGSIP-NTIFRGSALETLDLRDN 366 (688)
Q Consensus 299 ---------~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n 366 (688)
...|..+++.....-..+.+.++..+....+.+. .+..--.+.+...+..| ..|..+++|++|++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1233445555555555566666666555555222 22222223333433444 35778899999999999
Q ss_pred cCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEec
Q 005619 367 YFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMD 446 (688)
Q Consensus 367 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~ 446 (688)
++++.-+.+|.+...++.|.|..|++...-...|.++..|+.|+|++|+|+..-|..|..+... ..+.
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l------------~~l~ 352 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSL------------STLN 352 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccccee------------eeee
Confidence 9999999999999999999999999987777889999999999999999997777766543311 1111
Q ss_pred ccccccc--------cccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccc---cCChhh
Q 005619 447 LGVADIR--------NYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG---DIPSEI 515 (688)
Q Consensus 447 ~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~---~~p~~~ 515 (688)
+-.+... ..|.+... .-+ ..+-.....++.++++...+.. ..|++.
T Consensus 353 l~~Np~~CnC~l~wl~~Wlr~~~--~~~---------------------~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~ 409 (498)
T KOG4237|consen 353 LLSNPFNCNCRLAWLGEWLRKKS--VVG---------------------NPRCQSPGFVRQIPISDVAFGDFRCGGPEEL 409 (498)
T ss_pred hccCcccCccchHHHHHHHhhCC--CCC---------------------CCCCCCCchhccccchhccccccccCCcccc
Confidence 1111000 00000000 000 0000112334555555544321 122222
Q ss_pred h---------ccCCCC-eeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 516 C---------DLQNIH-GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 516 ~---------~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
+ .++-+. +..-|+..+. .+|..+. ..-..|.+.+|.++ .+|.+ .+.+| .+|+|+|+++-
T Consensus 410 ~~~~s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~ 478 (498)
T KOG4237|consen 410 GCLTSSPCPPPCTCLDTVVRCSNKLLK-LLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISS 478 (498)
T ss_pred CCCCCCCCCCCcchhhhhHhhcccchh-hcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceeh
Confidence 1 122332 3445555555 5555442 34567999999999 67776 67788 99999999863
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.6e-21 Score=209.70 Aligned_cols=114 Identities=25% Similarity=0.278 Sum_probs=50.9
Q ss_pred CCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEcc
Q 005619 190 LRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS 269 (688)
Q Consensus 190 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 269 (688)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++. +|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh---cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 445555555555 4454331 245555555555543 221 13455555555555542 2221 2345555555
Q ss_pred CCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcc
Q 005619 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG 323 (688)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 323 (688)
+|.++. +|.. ..+|+.|++++|+++. +|. ..++|+.|++++|++.+
T Consensus 271 ~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 271 SNPLTH-LPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS 316 (788)
T ss_pred CCchhh-hhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc
Confidence 555442 2221 1344455555555542 222 12345555555555443
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.4e-21 Score=206.47 Aligned_cols=263 Identities=28% Similarity=0.338 Sum_probs=129.2
Q ss_pred eeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCC
Q 005619 71 LKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNN 150 (688)
Q Consensus 71 L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~ 150 (688)
-..|+++++.++.+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|+++.++ ...++|+.|++++|.
T Consensus 203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~LtsLP--~lp~sL~~L~Ls~N~ 273 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLP--VLPPGLLELSIFSNP 273 (788)
T ss_pred CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccCccc--CcccccceeeccCCc
Confidence 3456666666666665443 25666666666665 4443 2455666666666555432 233455555555555
Q ss_pred CCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCc
Q 005619 151 FTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230 (688)
Q Consensus 151 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 230 (688)
++ .+|.. .++|+.|++++|+++. +|. ..++|+.|++++|.+. .+|.. ..+|+.|++++|.++.
T Consensus 274 L~-~Lp~l----p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~-~Lp~l----p~~L~~L~Ls~N~L~~--- 336 (788)
T PRK15387 274 LT-HLPAL----PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA-SLPAL----PSELCKLWAYNNQLTS--- 336 (788)
T ss_pred hh-hhhhc----hhhcCEEECcCCcccc-ccc---cccccceeECCCCccc-cCCCC----cccccccccccCcccc---
Confidence 54 33331 2345555555555542 232 1244555555555554 23321 1234444444444442
Q ss_pred ccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCC
Q 005619 231 PNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAI 310 (688)
Q Consensus 231 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 310 (688)
+|.. ..+|+.|++++|++++ +|.. .++|+.|++++|.+.. +|.. ..+
T Consensus 337 ----------------------LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 337 ----------------------LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSG 383 (788)
T ss_pred ----------------------cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence 2211 1244555555555542 2221 1344445555555542 2321 134
Q ss_pred CcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCC
Q 005619 311 LQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390 (688)
Q Consensus 311 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 390 (688)
|+.|++++|++++.+. ..++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|
T Consensus 384 L~~LdLs~N~Lt~LP~---l~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 384 LKELIVSGNRLTSLPV---LPSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cceEEecCCcccCCCC---cccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCC
Confidence 5555555555554322 1245566666666665 34432 234566666666664 45666666666666666666
Q ss_pred cCCCCCchhh
Q 005619 391 YLQGPIPHQL 400 (688)
Q Consensus 391 ~l~~~~~~~~ 400 (688)
++++..+..+
T Consensus 456 ~Ls~~~~~~L 465 (788)
T PRK15387 456 PLSERTLQAL 465 (788)
T ss_pred CCCchHHHHH
Confidence 6666555544
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.6e-19 Score=195.60 Aligned_cols=181 Identities=22% Similarity=0.344 Sum_probs=80.2
Q ss_pred CCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcc
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 293 (688)
+...|+++++.++. +|..+ .+.++.|++++|+++ .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCccc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 34556666655553 23322 135566666666655 2333322 35666666666555 2343332 345555555
Q ss_pred ccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCc
Q 005619 294 KNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP 373 (688)
Q Consensus 294 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 373 (688)
+|.+. .+|..+. .+|+.|++++|++...+... .++|+.|++++|+++ .+|..+. ++|+.|++++|+++. +|
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~-LP 320 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTA-LP 320 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccCcccccc--CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCcccc-CC
Confidence 55555 3333332 24555555555554322211 134555555555444 2332221 234444444444432 22
Q ss_pred hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 374 HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 374 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++
T Consensus 321 ~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~ 359 (754)
T PRK15370 321 ETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT 359 (754)
T ss_pred ccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC
Confidence 211 1344444444444442 333221 34444444444443
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=7.4e-19 Score=193.18 Aligned_cols=205 Identities=22% Similarity=0.357 Sum_probs=109.0
Q ss_pred CCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEcc
Q 005619 190 LRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS 269 (688)
Q Consensus 190 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 269 (688)
...|+++++.++ .+|... .+.|+.|++++|.++. +|..+. ++|++|++++|.++ .+|..+ ..+|+.|+++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l--~~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATL--PDTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhh--hccccEEECc
Confidence 445555555544 344322 1345555555555553 222221 35555555555555 233322 1345666666
Q ss_pred CCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCc
Q 005619 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIP 349 (688)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 349 (688)
+|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|+++..+... .++|+.|++++|.++ .+|
T Consensus 250 ~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt-~LP 320 (754)
T PRK15370 250 INRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLT-ALP 320 (754)
T ss_pred CCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccc-cCC
Confidence 66655 3444433 35666666666665 2344332 35666666666666433221 235666677777666 344
Q ss_pred hhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccch
Q 005619 350 NTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422 (688)
Q Consensus 350 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 422 (688)
..+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+. ++|+.|++++|+++ .+|.
T Consensus 321 ~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~ 384 (754)
T PRK15370 321 ETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPE 384 (754)
T ss_pred cccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCH
Confidence 3332 467777777777654 444442 56777777777776 3554442 56777777777776 3444
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.7e-20 Score=189.11 Aligned_cols=280 Identities=23% Similarity=0.252 Sum_probs=141.4
Q ss_pred EEEcccCcCC-CcCcccccCCCCCCEEeccCCcCCCc----ccccccCCCCCCEEEccCCcCCC------CCchhhhCCc
Q 005619 217 WLQLSNNNFD-GQIFPNYVNLTRLLFLYLDNNHFSGK----IKDGLLRSSELMVLDISNNHLSG------HIPSWMGNFS 285 (688)
Q Consensus 217 ~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~------~~~~~~~~l~ 285 (688)
.|+|..+.++ ......+..+++|+.|+++++.++.. ++..+...+++++++++++.+.+ ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 3455555554 22233334455566666666665432 22233444555666665555441 1112233344
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCcccc----CCchhccCC-CCccE
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGG----SIPNTIFRG-SALET 360 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~~-~~L~~ 360 (688)
+|+.|++++|.+.+..+..+..+.. . ++|++|++++|.+++ .+...+..+ ++|+.
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~-------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~ 141 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR-------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc-------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceE
Confidence 4444444444443322222222222 1 225555555555442 112233344 56666
Q ss_pred EeCcCCcCCCc----CchhhhcCCCccEEeccCCcCCCC----CchhhcCCCCCCEEEccCCcCccccchhhhhhhhccc
Q 005619 361 LDLRDNYFFGR----IPHQINEHSNLRALLLRGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432 (688)
Q Consensus 361 L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~ 432 (688)
|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+++..+..+....
T Consensus 142 L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~---- 217 (319)
T cd00116 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL---- 217 (319)
T ss_pred EEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHh----
Confidence 66666666532 233445556677777777766632 223344456777777777766543322222110
Q ss_pred CCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCC
Q 005619 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP 512 (688)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 512 (688)
..++.|+.|++++|.+++...
T Consensus 218 -----------------------------------------------------------~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 218 -----------------------------------------------------------ASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred -----------------------------------------------------------cccCCCCEEecCCCcCchHHH
Confidence 114566777777777665333
Q ss_pred hhhhc-----cCCCCeeeCCCCcCcc----CCCccccCCCCCCeEeCCCCccccc----CCcCCCCC-CCCCEEecCCCc
Q 005619 513 SEICD-----LQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNGQ----IPPQLTEL-HSLSKFDVSYND 578 (688)
Q Consensus 513 ~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l-~~L~~L~ls~N~ 578 (688)
..+.. .+.|+.|++++|.++. .++..+..+++|+.+|+++|.++.. ....+... +.|+++++.+|+
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 33322 2577777777777752 2334455567777777777777743 33334444 567777777765
Q ss_pred C
Q 005619 579 L 579 (688)
Q Consensus 579 l 579 (688)
+
T Consensus 319 ~ 319 (319)
T cd00116 319 F 319 (319)
T ss_pred C
Confidence 4
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.1e-19 Score=181.41 Aligned_cols=253 Identities=23% Similarity=0.273 Sum_probs=114.9
Q ss_pred cCCCCCEEEccCCCCCcc----cchhhhcCCCCCEEEccCCcCccccC------chhhcCCCCCCEEEcccCcCCCcCcc
Q 005619 162 VLPKLDCMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNKFAGELS------QSPVTNCFSLEWLQLSNNNFDGQIFP 231 (688)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~------~~~~~~l~~L~~L~L~~n~i~~~~~~ 231 (688)
.++.|+.++++++.++.. ++..+...+.+++++++++.+.+ .+ ...+..+++|+.|++++|.+....+.
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 99 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG 99 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence 344455555555544321 22333344445555555544431 01 01123344555555555554433333
Q ss_pred cccCCCC---CCEEeccCCcCCCc----ccccccCC-CCCCEEEccCCcCCCC----CchhhhCCcCCcEEEccccccCC
Q 005619 232 NYVNLTR---LLFLYLDNNHFSGK----IKDGLLRS-SELMVLDISNNHLSGH----IPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 232 ~~~~l~~---L~~L~L~~n~l~~~----~~~~~~~~-~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
.+..+.+ |++|++++|.+.+. +...+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+.+
T Consensus 100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 179 (319)
T cd00116 100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD 179 (319)
T ss_pred HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch
Confidence 3322222 55555555554421 11223333 5556666666555522 12233444556666666555543
Q ss_pred C----CcccccCCCCCcEEEccCCcCccccccc----c-ccCccceEeeecCccccCCchhcc-----CCCCccEEeCcC
Q 005619 300 N----IPVQFNNLAILQILDISENNLSGSMIST----L-NLSSVEHLYLQSNALGGSIPNTIF-----RGSALETLDLRD 365 (688)
Q Consensus 300 ~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~-~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~L~~L~l~~ 365 (688)
. ++..+..+++|++|++++|.+.+..... + .+++|++|++++|.+++.....+. ..+.|+.|++++
T Consensus 180 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~ 259 (319)
T cd00116 180 AGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSC 259 (319)
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccC
Confidence 1 1222334445666666666554332211 1 345555555555555432221111 124566666666
Q ss_pred CcCCCc----CchhhhcCCCccEEeccCCcCCCC----CchhhcCC-CCCCEEEccCCc
Q 005619 366 NYFFGR----IPHQINEHSNLRALLLRGNYLQGP----IPHQLCQL-RKLSIMDLSHNR 415 (688)
Q Consensus 366 n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~ls~n~ 415 (688)
|.++.. +...+..+++|+.+++++|.++.. ....+... +.|+.+++.+|+
T Consensus 260 n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 260 NDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 665421 223344455666666666666533 22222233 466666666554
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-18 Score=147.51 Aligned_cols=186 Identities=27% Similarity=0.445 Sum_probs=148.2
Q ss_pred ccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCC
Q 005619 326 ISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRK 405 (688)
Q Consensus 326 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 405 (688)
+..++++.++.|.+++|+++ .+|+.+..+.+|+.|++++|++ ...|..++.+++|+.|+++-|++. ..|..|+.++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 34457778889999999998 7888888999999999999999 567888999999999999999997 88999999999
Q ss_pred CCEEEccCCcCccc-cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecc
Q 005619 406 LSIMDLSHNRLNGS-IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKN 484 (688)
Q Consensus 406 L~~L~ls~n~l~~~-~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 484 (688)
|+.||+.+|++... .|..+..
T Consensus 104 levldltynnl~e~~lpgnff~---------------------------------------------------------- 125 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFY---------------------------------------------------------- 125 (264)
T ss_pred hhhhhccccccccccCCcchhH----------------------------------------------------------
Confidence 99999999998742 2332211
Q ss_pred ccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCC
Q 005619 485 RYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT 564 (688)
Q Consensus 485 ~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 564 (688)
+..|+.|.|+.|.+. .+|..++.+++|+.|.+..|.+- ..|..++.+++|+.|.+.+|+++ .+|++++
T Consensus 126 ---------m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~ 193 (264)
T KOG0617|consen 126 ---------MTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELA 193 (264)
T ss_pred ---------HHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhh
Confidence 345666888888887 77888899999999999998887 68888899999999999999988 6666666
Q ss_pred CCCC---CCEEecCCCcCccCCC
Q 005619 565 ELHS---LSKFDVSYNDLSGPIP 584 (688)
Q Consensus 565 ~l~~---L~~L~ls~N~l~~~~p 584 (688)
++.- =+.+.+.+|++..+|.
T Consensus 194 ~l~l~~~k~v~r~E~NPwv~pIa 216 (264)
T KOG0617|consen 194 NLDLVGNKQVMRMEENPWVNPIA 216 (264)
T ss_pred hhhhhhhHHHHhhhhCCCCChHH
Confidence 6542 2345566677665543
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=165.68 Aligned_cols=118 Identities=36% Similarity=0.624 Sum_probs=106.4
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecC
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS 575 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 575 (688)
.++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|..+.++++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcCccCCCCCc--ccCCcCccccCCCCCCCCCCCCCCCC
Q 005619 576 YNDLSGPIPDKE--QFSTFDESSYRGNLHLCGPPINKSCT 613 (688)
Q Consensus 576 ~N~l~~~~p~~~--~~~~~~~~~~~~n~~l~~~p~~~~C~ 613 (688)
+|+++|.+|... .+.......+.+|+.+||.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999752 22233456788999999987666774
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.4e-17 Score=137.38 Aligned_cols=179 Identities=27% Similarity=0.485 Sum_probs=128.5
Q ss_pred ccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCc
Q 005619 233 YVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312 (688)
Q Consensus 233 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 312 (688)
+..+.+++.|.+++|+++ .+|..++.+.+|+.|++++|+++ ..|..++.+++|+.|+++-|++. ..|..|+.++.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445667788888888888 56666788888888888888887 66777888888888888888877 6788888888888
Q ss_pred EEEccCCcCccc-cc-cccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCC
Q 005619 313 ILDISENNLSGS-MI-STLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390 (688)
Q Consensus 313 ~L~Ls~n~l~~~-~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 390 (688)
.||+.+|++.+. .| .+|.+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+ -..|..++.++.|++|.+.+|
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccc
Confidence 888888887652 22 2336777777777777776 6777777777777777777766 345677777777777777777
Q ss_pred cCCCCCchhhcCC---CCCCEEEccCCcCc
Q 005619 391 YLQGPIPHQLCQL---RKLSIMDLSHNRLN 417 (688)
Q Consensus 391 ~l~~~~~~~~~~l---~~L~~L~ls~n~l~ 417 (688)
+++ .+|..++++ .+=+.+.+.+|+..
T Consensus 184 rl~-vlppel~~l~l~~~k~v~r~E~NPwv 212 (264)
T KOG0617|consen 184 RLT-VLPPELANLDLVGNKQVMRMEENPWV 212 (264)
T ss_pred eee-ecChhhhhhhhhhhHHHHhhhhCCCC
Confidence 776 444444433 22234445555544
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-14 Score=146.31 Aligned_cols=174 Identities=30% Similarity=0.471 Sum_probs=114.9
Q ss_pred CccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEc
Q 005619 332 SSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDL 411 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 411 (688)
..-...+++.|++. ++|..++.+..|+.+.+..|.+ ..+|..+.++..|+.++|+.|+++ ..|..+|.|+ |+.|-+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33345566666666 6666666666666666666666 456666667777777777777776 5666666653 666777
Q ss_pred cCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccc
Q 005619 412 SHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKG 491 (688)
Q Consensus 412 s~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (688)
++|+++ .+|+.++-
T Consensus 151 sNNkl~-~lp~~ig~----------------------------------------------------------------- 164 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGL----------------------------------------------------------------- 164 (722)
T ss_pred ecCccc-cCCccccc-----------------------------------------------------------------
Confidence 777765 44543321
Q ss_pred cccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCE
Q 005619 492 VILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSK 571 (688)
Q Consensus 492 ~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~ 571 (688)
...|..||.+.|++. .+|..++.+.+|+.|++..|++. ..|..+..|+ |..||+|+|+++ .||-.|.+|+.|++
T Consensus 165 --~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~iPv~fr~m~~Lq~ 238 (722)
T KOG0532|consen 165 --LPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-YLPVDFRKMRHLQV 238 (722)
T ss_pred --chhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-ecchhhhhhhhhee
Confidence 345666777777776 55666777777777777777777 4555555554 677777777777 66777777777777
Q ss_pred EecCCCcCcc
Q 005619 572 FDVSYNDLSG 581 (688)
Q Consensus 572 L~ls~N~l~~ 581 (688)
|-|.+|+|..
T Consensus 239 l~LenNPLqS 248 (722)
T KOG0532|consen 239 LQLENNPLQS 248 (722)
T ss_pred eeeccCCCCC
Confidence 7777777764
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=141.74 Aligned_cols=92 Identities=32% Similarity=0.520 Sum_probs=84.9
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCC-CCCCEE
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSKF 572 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L 572 (688)
+++|+.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|+.++++++|+.|+|++|+++|.+|..+..+ .++..+
T Consensus 441 L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l 520 (623)
T PLN03150 441 LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF 520 (623)
T ss_pred CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence 5679999999999999999999999999999999999999999999999999999999999999999998764 467899
Q ss_pred ecCCCcCccCCCC
Q 005619 573 DVSYNDLSGPIPD 585 (688)
Q Consensus 573 ~ls~N~l~~~~p~ 585 (688)
++++|+..|.+|.
T Consensus 521 ~~~~N~~lc~~p~ 533 (623)
T PLN03150 521 NFTDNAGLCGIPG 533 (623)
T ss_pred EecCCccccCCCC
Confidence 9999998776653
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.27 E-value=7e-12 Score=132.24 Aligned_cols=180 Identities=36% Similarity=0.528 Sum_probs=98.4
Q ss_pred cCccceEeeecCccccCCchhccCCC-CccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 331 LSSVEHLYLQSNALGGSIPNTIFRGS-ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
.+.++.|++.+|.++ .++....... +|+.|++++|++. .+|..++.+++|+.|++++|++. .+|...+..+.|+.|
T Consensus 115 ~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred ccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 344555555555554 3444444442 5666666666552 23344556666666666666665 344433355666666
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|+++ .+|.....
T Consensus 192 ~ls~N~i~-~l~~~~~~--------------------------------------------------------------- 207 (394)
T COG4886 192 DLSGNKIS-DLPPEIEL--------------------------------------------------------------- 207 (394)
T ss_pred eccCCccc-cCchhhhh---------------------------------------------------------------
Confidence 66666665 33332110
Q ss_pred cccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCC
Q 005619 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 569 (688)
+..|++|++++|.+. ..+..+..+.++..|.+++|++. ..+..++.+++++.|++++|+++...+ +..+.++
T Consensus 208 ----~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l 279 (394)
T COG4886 208 ----LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNL 279 (394)
T ss_pred ----hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCcc
Confidence 223555666666433 34455666666666666666665 335556666666666666666663322 6666666
Q ss_pred CEEecCCCcCccCCCC
Q 005619 570 SKFDVSYNDLSGPIPD 585 (688)
Q Consensus 570 ~~L~ls~N~l~~~~p~ 585 (688)
+.|++++|.++...|.
T Consensus 280 ~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 280 RELDLSGNSLSNALPL 295 (394)
T ss_pred CEEeccCccccccchh
Confidence 6666666666655443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-13 Score=138.15 Aligned_cols=133 Identities=29% Similarity=0.428 Sum_probs=77.2
Q ss_pred CCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecC
Q 005619 263 LMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSN 342 (688)
Q Consensus 263 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n 342 (688)
-...|++.|++. .+|..+..+..|+.+.+..|.+. .+|.+++++..|++++++.|+++
T Consensus 77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-------------------- 134 (722)
T KOG0532|consen 77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-------------------- 134 (722)
T ss_pred hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh--------------------
Confidence 345566666665 55666666666666666666665 45555666655665665555554
Q ss_pred ccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccch
Q 005619 343 ALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422 (688)
Q Consensus 343 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 422 (688)
..|..++.++ |+.|-+++|++ +.+|+.++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+
T Consensus 135 ----~lp~~lC~lp-Lkvli~sNNkl-~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~ 206 (722)
T KOG0532|consen 135 ----HLPDGLCDLP-LKVLIVSNNKL-TSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPE 206 (722)
T ss_pred ----cCChhhhcCc-ceeEEEecCcc-ccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCH
Confidence 4444444444 55566666655 344555555566666666666665 45555666666666666666654 4444
Q ss_pred hhh
Q 005619 423 CIT 425 (688)
Q Consensus 423 ~l~ 425 (688)
.++
T Consensus 207 El~ 209 (722)
T KOG0532|consen 207 ELC 209 (722)
T ss_pred HHh
Confidence 443
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.6e-12 Score=120.23 Aligned_cols=114 Identities=22% Similarity=0.281 Sum_probs=67.1
Q ss_pred ccCCCCCcEEEccCCcCcccccccc-----ccCccceEeeecCccccCCch-------------hccCCCCccEEeCcCC
Q 005619 305 FNNLAILQILDISENNLSGSMISTL-----NLSSVEHLYLQSNALGGSIPN-------------TIFRGSALETLDLRDN 366 (688)
Q Consensus 305 l~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~~~~-------------~~~~~~~L~~L~l~~n 366 (688)
+..+++|+++|||+|-+....+..+ .+..|++|.|.+|.+....-. ....-+.|+++...+|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 3455566666666666654433322 466677777777665422111 1223366777777777
Q ss_pred cCCCc----CchhhhcCCCccEEeccCCcCCCC----CchhhcCCCCCCEEEccCCcCcc
Q 005619 367 YFFGR----IPHQINEHSNLRALLLRGNYLQGP----IPHQLCQLRKLSIMDLSHNRLNG 418 (688)
Q Consensus 367 ~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~ 418 (688)
++... +...|...+.|+.+.+..|.|... ....+..|++|+.|||.+|-++-
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 77443 224455667777777777776422 23456677777777777777763
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.1e-12 Score=117.03 Aligned_cols=87 Identities=28% Similarity=0.333 Sum_probs=62.8
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccC-CcCCCCCCCCCEE
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI-PPQLTELHSLSKF 572 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L 572 (688)
+++|+.||||+|.++ .+...=..+-+.+.|+|++|.+... ..++.+-+|..||++.|+|.... -..++++|.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 456777777777776 3334445567778888888888632 45677778888888888887432 2467888889999
Q ss_pred ecCCCcCccCC
Q 005619 573 DVSYNDLSGPI 583 (688)
Q Consensus 573 ~ls~N~l~~~~ 583 (688)
.|.+|++.+.+
T Consensus 405 ~L~~NPl~~~v 415 (490)
T KOG1259|consen 405 RLTGNPLAGSV 415 (490)
T ss_pred hhcCCCccccc
Confidence 99999988754
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.6e-11 Score=126.88 Aligned_cols=182 Identities=33% Similarity=0.483 Sum_probs=116.2
Q ss_pred CCCCcEEEccCCcCccccccccccC-ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEe
Q 005619 308 LAILQILDISENNLSGSMISTLNLS-SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 308 l~~L~~L~Ls~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 386 (688)
++.++.|++.+|.++...+...... +|+.|++++|.+. .+|..+..+++|+.|++++|++.. +|......++|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~-l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD-LPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh-hhhhhhhhhhhhhee
Confidence 3455666666666655544443442 6666666666666 455556677777777777777743 344444667777777
Q ss_pred ccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCC
Q 005619 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 466 (688)
+++|++. .+|........|+++.+++|++. ..+..+.+
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~---------------------------------------- 230 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN---------------------------------------- 230 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh----------------------------------------
Confidence 7777777 45554455566777888777532 22222221
Q ss_pred CCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCC
Q 005619 467 IDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 546 (688)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 546 (688)
+..+..+.+++|++. ..+..++.+++++.|++++|+++. ++. ++.+.+++
T Consensus 231 ---------------------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~ 280 (394)
T COG4886 231 ---------------------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLR 280 (394)
T ss_pred ---------------------------cccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccC
Confidence 334555667777765 336667778888888888888884 333 78888888
Q ss_pred eEeCCCCcccccCCcCC
Q 005619 547 SLDLSHNKLNGQIPPQL 563 (688)
Q Consensus 547 ~L~Ls~N~l~~~~p~~l 563 (688)
.||+++|.++...|...
T Consensus 281 ~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 281 ELDLSGNSLSNALPLIA 297 (394)
T ss_pred EEeccCccccccchhhh
Confidence 88888888886655543
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-12 Score=122.29 Aligned_cols=207 Identities=25% Similarity=0.219 Sum_probs=96.7
Q ss_pred CcceeEEECCCCCCCCcc--hhhhCCCCCCEEECCCCcCCCCCc-hHHhhCCCCCcEEEccCCCCCCCCC---CCCCCCc
Q 005619 68 TFQLKVLSLPNCNLGVIP--NFLLHQFNLKYLDLSHNKLAGNFP-TWLLENNTKLEVLYLTNNSFSGFQL---TSAQHGL 141 (688)
Q Consensus 68 l~~L~~L~l~~n~l~~lp--~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~L 141 (688)
+.+|+.+.|.++.+...+ .....|++++.||||.|-+..-.+ ..+.+.+++|+.|+++.|.+..... ...+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 456666666666665544 255666677777777765542111 1234566666666666666553211 1134445
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
+.|.++.|.++-.--..+...+|+|+.|++.+|...........-+..|+.|||++|.+.. .+
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~---------------- 262 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FD---------------- 262 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cc----------------
Confidence 5555555544421112222234555555555443211222222233344444554444431 11
Q ss_pred cCcCCCcCcccccCCCCCCEEeccCCcCCCc-cccc-----ccCCCCCCEEEccCCcCCCC-CchhhhCCcCCcEEEccc
Q 005619 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGK-IKDG-----LLRSSELMVLDISNNHLSGH-IPSWMGNFSNLYILSMSK 294 (688)
Q Consensus 222 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~-----~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~ 294 (688)
.....+.++.|+.|+++.+.+... .|+. ....++|++|++..|++... ....+..+++|+.|.+..
T Consensus 263 -------~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 263 -------QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred -------cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 112233344444444444444321 1111 23345666666666666411 112234455666666666
Q ss_pred cccC
Q 005619 295 NLLE 298 (688)
Q Consensus 295 n~l~ 298 (688)
|.+.
T Consensus 336 n~ln 339 (505)
T KOG3207|consen 336 NYLN 339 (505)
T ss_pred cccc
Confidence 6654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.16 E-value=5.2e-11 Score=106.92 Aligned_cols=109 Identities=25% Similarity=0.373 Sum_probs=31.6
Q ss_pred CCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEE
Q 005619 90 HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCM 169 (688)
Q Consensus 90 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L 169 (688)
+..++++|+|++|.|+ .+.. +...+.+|+.|++++|.++.+.....++.|++|++++|.++ .+...+...+|+|++|
T Consensus 17 n~~~~~~L~L~~n~I~-~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-TIEN-LGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S---TT-TT--EEE-TTS--S--TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccc-cccc-hhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 3445666666666665 3322 21245566666666666666555555666666666666666 4544443346677777
Q ss_pred EccCCCCCcc-cchhhhcCCCCCEEEccCCcCc
Q 005619 170 NISKNSFEGN-IPSSIGKMQGLRLLDVSSNKFA 201 (688)
Q Consensus 170 ~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~ 201 (688)
++++|++... .-..++.+++|++|++.+|.+.
T Consensus 94 ~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 94 YLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp E-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred ECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7777766532 1234556666666666666655
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.1e-11 Score=116.40 Aligned_cols=113 Identities=19% Similarity=0.205 Sum_probs=58.4
Q ss_pred cCCCCCCEEEcccCcCCC----cCcccccCCCCCCEEeccCCcCCCc----ccccccCCCCCCEEEccCCcCCCCCchhh
Q 005619 210 TNCFSLEWLQLSNNNFDG----QIFPNYVNLTRLLFLYLDNNHFSGK----IKDGLLRSSELMVLDISNNHLSGHIPSWM 281 (688)
Q Consensus 210 ~~l~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 281 (688)
...+.|+.+.+..|.|.. .....+..+++|+.|||.+|-++.. +...+..+++|+.|++++|.+.......+
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF 261 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence 334455555555554431 1123344555666666665555432 22234445566666666666654443333
Q ss_pred h-----CCcCCcEEEccccccCCC----CcccccCCCCCcEEEccCCcCc
Q 005619 282 G-----NFSNLYILSMSKNLLEGN----IPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 282 ~-----~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
. ..++|+.|.+.+|.++.. +..+....+.|..|+|++|++.
T Consensus 262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 1 256666666666666531 1223344566777777777763
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.4e-11 Score=120.73 Aligned_cols=185 Identities=21% Similarity=0.246 Sum_probs=92.5
Q ss_pred CCCCcCEEEccCCCCCCCCC-hhhhhcCCCCCEEEccCCCCCcc--cchhhhcCCCCCEEEccCCcCccccCchhhcCCC
Q 005619 137 AQHGLISLDISSNNFTGKLP-QNMGIVLPKLDCMNISKNSFEGN--IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF 213 (688)
Q Consensus 137 ~~~~L~~L~ls~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 213 (688)
...+|+++.|.++.+. ..+ +.....+++++.|||++|-+... +......+++|+.|+++.|++........-..++
T Consensus 119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 3445555555555543 222 12334566777777776655422 2233446677777777777665333332223455
Q ss_pred CCCEEEcccCcCCCc-CcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCC-chhhhCCcCCcEEE
Q 005619 214 SLEWLQLSNNNFDGQ-IFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI-PSWMGNFSNLYILS 291 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~ 291 (688)
.|+.|.++.|.++.. +......+|+|+.|++..|...........-+..|+.|||++|.+.... -...+.++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 666666666666521 1122345566666666666422222222333455666666666654221 12344556666666
Q ss_pred ccccccCCCC-ccc-----ccCCCCCcEEEccCCcCc
Q 005619 292 MSKNLLEGNI-PVQ-----FNNLAILQILDISENNLS 322 (688)
Q Consensus 292 l~~n~l~~~~-~~~-----l~~l~~L~~L~Ls~n~l~ 322 (688)
++.+.+.... |++ ...+++|++|++..|++.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~ 314 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR 314 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence 6666554321 111 223445555555555543
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-11 Score=111.88 Aligned_cols=134 Identities=28% Similarity=0.355 Sum_probs=104.6
Q ss_pred ccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcc
Q 005619 352 IFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWK 431 (688)
Q Consensus 352 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~ 431 (688)
+..+..|+++|+++|.| ..+.++..-.|.++.|++++|.+... +.+..+++|+.||+|+|.++. +-.+-
T Consensus 280 ~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh------- 348 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWH------- 348 (490)
T ss_pred cchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhH-------
Confidence 33456799999999988 45667788889999999999999733 347889999999999998862 11111
Q ss_pred cCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccC
Q 005619 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI 511 (688)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 511 (688)
..+-+.++|.|+.|.+. .
T Consensus 349 ------------------------------------------------------------~KLGNIKtL~La~N~iE--~ 366 (490)
T KOG1259|consen 349 ------------------------------------------------------------LKLGNIKTLKLAQNKIE--T 366 (490)
T ss_pred ------------------------------------------------------------hhhcCEeeeehhhhhHh--h
Confidence 11456788999999885 2
Q ss_pred ChhhhccCCCCeeeCCCCcCccCC-CccccCCCCCCeEeCCCCccccc
Q 005619 512 PSEICDLQNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 512 p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
-..++.+-+|..||+++|+|.... -..+|+++.|+.+.|.+|.+.+.
T Consensus 367 LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 367 LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 345788899999999999998542 35799999999999999999954
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-10 Score=104.07 Aligned_cols=108 Identities=28% Similarity=0.344 Sum_probs=32.9
Q ss_pred CCCCCcEEEccCCCCCCCCCCC-CCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhh-hcCCCCCE
Q 005619 115 NNTKLEVLYLTNNSFSGFQLTS-AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI-GKMQGLRL 192 (688)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~ 192 (688)
+..++++|+|++|.++.+.... .+.+|+.|++++|.++ .++. +. .+++|++|++++|.++.. .+.+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~-l~-~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG-LP-GLPRLKTLDLSNNRISSI-SEGLDKNLPNLQE 92 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred cccccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC-cc-ChhhhhhcccCCCCCCcc-ccchHHhCCcCCE
Confidence 5567788888888877665444 4667777777777776 4442 22 467777777777777743 3333 35677777
Q ss_pred EEccCCcCccccCchhhcCCCCCCEEEcccCcCC
Q 005619 193 LDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226 (688)
Q Consensus 193 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 226 (688)
|++++|++...-....+..+++|+.|++.+|.++
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 7777777663333334455666666666666655
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-10 Score=83.88 Aligned_cols=60 Identities=43% Similarity=0.630 Sum_probs=36.8
Q ss_pred CCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcC
Q 005619 520 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579 (688)
Q Consensus 520 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 579 (688)
+|+.|++++|+++...+..|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666655555666666666666666666655556666666666666666653
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.94 E-value=5.2e-10 Score=82.45 Aligned_cols=61 Identities=44% Similarity=0.612 Sum_probs=57.5
Q ss_pred ccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcc
Q 005619 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 555 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 555 (688)
++|++|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4688999999999988889999999999999999999988889999999999999999986
|
... |
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.6e-09 Score=120.27 Aligned_cols=249 Identities=22% Similarity=0.208 Sum_probs=105.9
Q ss_pred CCCCCEEEccCCCC-cccccccCCCCCcceeEEECCCCCC-CCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCc
Q 005619 43 LSKLEVFQLSMEAD-LLQVKIENCLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120 (688)
Q Consensus 43 l~~L~~L~Ls~~~~-~~~~~~~~~~~l~~L~~L~l~~n~l-~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 120 (688)
++.|+.|-+..|.. ...++...|..++.|++||+++|.- +++|..++.+-+||+|++++..++ .+|..+ +++..|.
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l-~~Lk~L~ 621 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGL-GNLKKLI 621 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHH-HHHHhhh
Confidence 33455555544431 2223333344555555555554432 555555555555555555555555 555544 3555555
Q ss_pred EEEccCCCCCCCC--CCCCCCCcCEEEccCCCC--CCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCC----E
Q 005619 121 VLYLTNNSFSGFQ--LTSAQHGLISLDISSNNF--TGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLR----L 192 (688)
Q Consensus 121 ~L~L~~n~l~~~~--~~~~~~~L~~L~ls~n~~--~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~ 192 (688)
+|++..+.-.... +...+.+|++|.+..-.. +...-..+ ..+.+|+.+....... .+-..+..++.|. .
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~ 698 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQS 698 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchh--HhHhhhhhhHHHHHHhHh
Confidence 5555544322111 111355555555543321 11111111 2344444444432221 0111122222222 2
Q ss_pred EEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccC------CCCCCEEeccCCcCCCcccccccCCCCCCEE
Q 005619 193 LDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN------LTRLLFLYLDNNHFSGKIKDGLLRSSELMVL 266 (688)
Q Consensus 193 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 266 (688)
+.+.++... .. ......+.+|+.|.+.++.+.......... ++++..+...++... ..+.+....++|+.|
T Consensus 699 l~~~~~~~~-~~-~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l 775 (889)
T KOG4658|consen 699 LSIEGCSKR-TL-ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSL 775 (889)
T ss_pred hhhcccccc-ee-ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEE
Confidence 222222211 11 112345667777777777665322211111 222333333333221 122222345677777
Q ss_pred EccCCcCCCCCchhhhCCcCCcEEEccccccCC
Q 005619 267 DISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 267 ~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
.+..+.....+......+..+..+.+..+.+.+
T Consensus 776 ~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 776 SLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred EEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 777666554444444445555554454444443
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.7e-09 Score=119.06 Aligned_cols=274 Identities=21% Similarity=0.201 Sum_probs=164.1
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCC--CCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCE
Q 005619 115 NNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNN--FTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRL 192 (688)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 192 (688)
.....+...+-+|.+........++.|++|-+..|. +. .++..++..+|.|+.||+++|.--+.+|+.++.+-+|++
T Consensus 521 ~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lry 599 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRY 599 (889)
T ss_pred chhheeEEEEeccchhhccCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhc
Confidence 345677777777777766666677788888888886 44 777777778888888888887766678888888888888
Q ss_pred EEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCC--CcccccccCCCCCCEEEccC
Q 005619 193 LDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS--GKIKDGLLRSSELMVLDISN 270 (688)
Q Consensus 193 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~Ls~ 270 (688)
|++++..+. .+|..+ .++..|.+|++..+......+.....+++|++|.+...... ...-..+..+.+|+.+....
T Consensus 600 L~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 600 LDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred ccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 888888887 777764 67888888888887655555566666888888887665422 11122234444555554433
Q ss_pred CcCCCCCchhhhCCcCCc----EEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc------c-cCccceEee
Q 005619 271 NHLSGHIPSWMGNFSNLY----ILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL------N-LSSVEHLYL 339 (688)
Q Consensus 271 n~l~~~~~~~~~~l~~L~----~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~------~-~~~L~~L~L 339 (688)
... .+-..+..++.|. .+.+..+... ..+..+..+.+|+.|.+.++.+........ . ++++..+..
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~ 754 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSI 754 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHh
Confidence 222 0111122223322 2222222222 334456667778888887777654322211 1 223333333
Q ss_pred ecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCC
Q 005619 340 QSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP 395 (688)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 395 (688)
.++... ..+......++|+.|.+..+.....+......+..+..+.+..+.+.+.
T Consensus 755 ~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l 809 (889)
T KOG4658|consen 755 LNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGL 809 (889)
T ss_pred hccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccc
Confidence 333322 1222223346777777777766555555555555566555555555543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.81 E-value=6.3e-10 Score=117.45 Aligned_cols=224 Identities=26% Similarity=0.263 Sum_probs=99.6
Q ss_pred CCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEE
Q 005619 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISL 144 (688)
Q Consensus 65 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L 144 (688)
+..+.+|+.|++.+|++..+...+..+++|++|++++|.|+. +.. +..++.|+.|++++|.++.+.....+..|+.+
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~~--l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LEG--LSTLTLLKELNLSGNLISDISGLESLKSLKLL 167 (414)
T ss_pred cccccceeeeeccccchhhcccchhhhhcchheecccccccc-ccc--hhhccchhhheeccCcchhccCCccchhhhcc
Confidence 344455555555555554444334445555555555555542 221 12344455555555555544433344445555
Q ss_pred EccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc
Q 005619 145 DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224 (688)
Q Consensus 145 ~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 224 (688)
++++|.+. .+... . ...+.+++.+.+.+|.+. .+.. +..+..+..+++..|.
T Consensus 168 ~l~~n~i~-~ie~~-----------------------~-~~~~~~l~~l~l~~n~i~-~i~~--~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 168 DLSYNRIV-DIEND-----------------------E-LSELISLEELDLGGNSIR-EIEG--LDLLKKLVLLSLLDNK 219 (414)
T ss_pred cCCcchhh-hhhhh-----------------------h-hhhccchHHHhccCCchh-cccc--hHHHHHHHHhhccccc
Confidence 55555444 22221 1 234444445555554443 1111 1122223333444444
Q ss_pred CCCcCcccccCCC--CCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCC--
Q 005619 225 FDGQIFPNYVNLT--RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN-- 300 (688)
Q Consensus 225 i~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 300 (688)
++...+ +.... .|+.+++++|.+.. .+..+..+..+..|++..|++.... .+...+.+..+....+.+...
T Consensus 220 i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 294 (414)
T KOG0531|consen 220 ISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKLALSEA 294 (414)
T ss_pred ceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhccccccc--cccccchHHHhccCcchhcchhh
Confidence 432111 11111 25555555555542 2233444556666666666554221 123334444555555544311
Q ss_pred -Ccc-cccCCCCCcEEEccCCcCccc
Q 005619 301 -IPV-QFNNLAILQILDISENNLSGS 324 (688)
Q Consensus 301 -~~~-~l~~l~~L~~L~Ls~n~l~~~ 324 (688)
... .....+.++...+..|.+...
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 295 ISQEYITSAAPTLVTLTLELNPIRKI 320 (414)
T ss_pred hhccccccccccccccccccCccccc
Confidence 111 134455666677776666543
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.75 E-value=9e-10 Score=116.25 Aligned_cols=245 Identities=28% Similarity=0.292 Sum_probs=165.6
Q ss_pred hCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC-CCCCCCcCEEEccCCCCCCCCChhhhhcCCCCC
Q 005619 89 LHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL-TSAQHGLISLDISSNNFTGKLPQNMGIVLPKLD 167 (688)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~ 167 (688)
..+..++.+++..|.+.. +-.. ...+++|+.|++.+|++..+.. ...+++|++|++++|.|+ .+...- .++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~-l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~l~--~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNH-LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEGLS--TLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcc-cccccceeeeeccccchhhcccchhhhhcchheeccccccc-cccchh--hccchh
Confidence 345556666677766652 1111 2356777777777777777655 566777778888887776 333222 366688
Q ss_pred EEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCc-hhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccC
Q 005619 168 CMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQ-SPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDN 246 (688)
Q Consensus 168 ~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 246 (688)
.|++++|.++.. ..+..++.|+.+++++|.+. .+.. . ...+.+++.+++.+|.+.. ...+..+..+..+++..
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~-~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~ 217 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIV-DIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLD 217 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhh-hhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhccc
Confidence 888888888743 34556889999999999987 4444 2 3678899999999998874 33344555666668888
Q ss_pred CcCCCcccccccCCCC--CCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccc
Q 005619 247 NHFSGKIKDGLLRSSE--LMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGS 324 (688)
Q Consensus 247 n~l~~~~~~~~~~~~~--L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 324 (688)
|.++...+ +..... |+.+++++|.+.. .+..+..+..+..+++.+|++... ..+...+.+..+....+.+...
T Consensus 218 n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 292 (414)
T KOG0531|consen 218 NKISKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALS 292 (414)
T ss_pred ccceeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcch
Confidence 88874322 222333 8999999999883 335567788999999999988643 2344556677777777776632
Q ss_pred cc---c--ccccCccceEeeecCccccCCc
Q 005619 325 MI---S--TLNLSSVEHLYLQSNALGGSIP 349 (688)
Q Consensus 325 ~~---~--~~~~~~L~~L~L~~n~l~~~~~ 349 (688)
.. . ....+.++.+.+..+.+....+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 293 EAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhhhccccccccccccccccccCccccccc
Confidence 11 1 2256778888888887764443
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.5e-10 Score=105.49 Aligned_cols=64 Identities=30% Similarity=0.253 Sum_probs=26.3
Q ss_pred CCCcceeEEECCCCCC-CCcchhhhCCCCCCEEECCCCc-CCCCCchHHhhCCCCCcEEEccCCCC
Q 005619 66 LPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNK-LAGNFPTWLLENNTKLEVLYLTNNSF 129 (688)
Q Consensus 66 ~~l~~L~~L~l~~n~l-~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l 129 (688)
.+|.+|+.|.+.++++ ..+...+++..+|+.|+++.+. ++..-...+++.|+.|..|++++|.+
T Consensus 207 s~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 207 SQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL 272 (419)
T ss_pred HHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc
Confidence 3344444444444444 3333344444444444444432 22111222334444444444444433
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-09 Score=113.88 Aligned_cols=85 Identities=33% Similarity=0.341 Sum_probs=54.8
Q ss_pred cccccEEEccCCcccccCCh-hhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCC-cCCCCCCCCCE
Q 005619 494 LDYMAGLDLSSNKLTGDIPS-EICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP-PQLTELHSLSK 571 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~ 571 (688)
++.|+.|||+.|.+. .+|. .-.++. |+.|+|++|.++.. ..+.+|++|+.||+|+|-|.+.-. ..+..|.+|..
T Consensus 208 l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~ 283 (1096)
T KOG1859|consen 208 LPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIV 283 (1096)
T ss_pred cccccccccccchhc-cccccchhhhh-heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHH
Confidence 566777888888776 3332 222333 77788888877733 346677778888888887765321 12345566777
Q ss_pred EecCCCcCccC
Q 005619 572 FDVSYNDLSGP 582 (688)
Q Consensus 572 L~ls~N~l~~~ 582 (688)
|.|.+|++.|-
T Consensus 284 L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 284 LWLEGNPLCCA 294 (1096)
T ss_pred HhhcCCccccC
Confidence 78888887763
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-09 Score=112.70 Aligned_cols=128 Identities=27% Similarity=0.254 Sum_probs=99.5
Q ss_pred CCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEcc
Q 005619 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNIS 172 (688)
Q Consensus 93 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~ 172 (688)
.|.+.+.++|.+. .+... ++-++.|+.|+|++|+++.......+++|++|||++|.+. .+|..-...+ +|+.|.++
T Consensus 165 ~L~~a~fsyN~L~-~mD~S-Lqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDES-LQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHH-HHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence 4677777888776 33333 3567889999999999998877778999999999999988 6665444344 49999999
Q ss_pred CCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC
Q 005619 173 KNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226 (688)
Q Consensus 173 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 226 (688)
+|.++.. ..+.++.+|+.||+++|-+.+.-.-.++..+..|+.|+|.+|.+-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9988743 457788999999999998886555555667778899999998875
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.5e-09 Score=97.20 Aligned_cols=158 Identities=21% Similarity=0.174 Sum_probs=90.3
Q ss_pred CCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCc-CccccCchhhcCCCCCCE
Q 005619 139 HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK-FAGELSQSPVTNCFSLEW 217 (688)
Q Consensus 139 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~ 217 (688)
+.|+++|||...++..--..+...+.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+. ++...-.-.+.+|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4588888888877755555555678888888888888887777778888888888887764 322222334567777777
Q ss_pred EEcccCcCCCcCcccc-c-CCCCCCEEeccCCcCC---CcccccccCCCCCCEEEccCCcC-CCCCchhhhCCcCCcEEE
Q 005619 218 LQLSNNNFDGQIFPNY-V-NLTRLLFLYLDNNHFS---GKIKDGLLRSSELMVLDISNNHL-SGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 218 L~L~~n~i~~~~~~~~-~-~l~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~ 291 (688)
|+++.|.+........ . --++|+.|+++++.-. ..+..-..++++|..|||++|.. +......|.+++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 7777776553221111 1 1245566666555311 01111123455555555555432 222222334455555555
Q ss_pred ccccc
Q 005619 292 MSKNL 296 (688)
Q Consensus 292 l~~n~ 296 (688)
++.|.
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 55553
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.4e-09 Score=85.49 Aligned_cols=89 Identities=22% Similarity=0.325 Sum_probs=50.3
Q ss_pred ccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEec
Q 005619 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDV 574 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 574 (688)
+.++.|+|++|+++ .+|.++..++.|+.|+++.|.+. ..|..+..|.+|-.||..+|.+- .+|..+-.-+.....++
T Consensus 77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~l 153 (177)
T KOG4579|consen 77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKL 153 (177)
T ss_pred chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHh
Confidence 34555666666666 55666666666666666666666 45555555666666666666655 33333222222333344
Q ss_pred CCCcCccCCCCC
Q 005619 575 SYNDLSGPIPDK 586 (688)
Q Consensus 575 s~N~l~~~~p~~ 586 (688)
.++++.+.+|..
T Consensus 154 gnepl~~~~~~k 165 (177)
T KOG4579|consen 154 GNEPLGDETKKK 165 (177)
T ss_pred cCCcccccCccc
Confidence 556666655543
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.4e-07 Score=88.53 Aligned_cols=215 Identities=17% Similarity=0.144 Sum_probs=117.9
Q ss_pred chhhcCCCCCCEEeCCCCcCcccccCHHhhc-cCCCCCEEEccCCCCccccccc-CCCCCcceeEEECCCCCCCC-cchh
Q 005619 11 PSVIANLTSLEYLALYDNKFKGRLFSFCSLA-NLSKLEVFQLSMEADLLQVKIE-NCLPTFQLKVLSLPNCNLGV-IPNF 87 (688)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~-~l~~L~~L~Ls~~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~-lp~~ 87 (688)
+-.+.....++.|-+-++.|.. .-.+..|+ .++.++.+||.+|.+....... .+.++++|++|+++.|.+.. |-..
T Consensus 38 ~~~v~s~ra~ellvln~~~id~-~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~l 116 (418)
T KOG2982|consen 38 YLGVSSLRALELLVLNGSIIDN-EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSL 116 (418)
T ss_pred eeeeccccchhhheecCCCCCc-chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccC
Confidence 3334444556667777776654 22233343 4788888999888776443333 24578899999999998832 2111
Q ss_pred hhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC-----CCCCcCEEEccCCCCCCCC-Chhhhh
Q 005619 88 LLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS-----AQHGLISLDISSNNFTGKL-PQNMGI 161 (688)
Q Consensus 88 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~~L~~L~ls~n~~~~~~-~~~~~~ 161 (688)
-....+|++|-|.+..+.-.-...+...+|.++.|.++.|++..+.... .-+.+++|.+-.|...... -..+..
T Consensus 117 p~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r 196 (418)
T KOG2982|consen 117 PLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR 196 (418)
T ss_pred cccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh
Confidence 1456688999988887765555566678888889988888655443222 1223444444333221000 000112
Q ss_pred cCCCCCEEEccCCCCCcc-cchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC
Q 005619 162 VLPKLDCMNISKNSFEGN-IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226 (688)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 226 (688)
.+|++..+.+..|.+... ....+..++.+.-|+|+.+++..-.....+.++++|..|.++++.+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence 345555555555544322 11223344555555666555543333333445555555555555443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.6e-08 Score=96.03 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=68.9
Q ss_pred cCCCCCEEEccCCcCccccC-chhhcCCCCCCEEEcccCc-CCCcCcccc-cCCCCCCEEeccCCcCCC--cccccccCC
Q 005619 186 KMQGLRLLDVSSNKFAGELS-QSPVTNCFSLEWLQLSNNN-FDGQIFPNY-VNLTRLLFLYLDNNHFSG--KIKDGLLRS 260 (688)
Q Consensus 186 ~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~--~~~~~~~~~ 260 (688)
.+..|++|+.+++...+..+ .....++.+|+.+.++.+. ++..-...+ .+++.|+.+++..+.... .+...-.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34556666666553222211 1222445666666666654 222222222 245666666666654321 122222456
Q ss_pred CCCCEEEccCCcCCCCC-----chhhhCCcCCcEEEccccccC-CCCcccccCCCCCcEEEccCCc
Q 005619 261 SELMVLDISNNHLSGHI-----PSWMGNFSNLYILSMSKNLLE-GNIPVQFNNLAILQILDISENN 320 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~-----~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~ 320 (688)
+.|+++.+++|...... ...-..+..|+.+.++++... ...-+.+..+++|+.+++-+++
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 67777777766533111 111233566777777777543 2233455667788887777664
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.8e-07 Score=86.60 Aligned_cols=111 Identities=19% Similarity=0.106 Sum_probs=50.9
Q ss_pred CCCCCEEEccCCcCccccCchh----hcCCCCCCEEEcccCcCCCcC-----cccccCCCCCCEEeccCCcCCCcc----
Q 005619 187 MQGLRLLDVSSNKFAGELSQSP----VTNCFSLEWLQLSNNNFDGQI-----FPNYVNLTRLLFLYLDNNHFSGKI---- 253 (688)
Q Consensus 187 l~~L~~L~L~~n~l~~~~~~~~----~~~l~~L~~L~L~~n~i~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~---- 253 (688)
-|.|++.....|++. ..+... +..-..|+.+.+..|.|.... ...+..+.+|+.||+..|.++...
T Consensus 156 kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 156 KPKLEVVICGRNRLE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred CCCceEEEeccchhc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 355666666666654 222211 111235556666655554211 112234455666666666554321
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchhhh------CCcCCcEEEccccccC
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSWMG------NFSNLYILSMSKNLLE 298 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~------~l~~L~~L~l~~n~l~ 298 (688)
..++...+.|+.|.+..|-++......+- ..++|..|...+|.+.
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR 285 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence 22233444556666666655543332221 1344555555555443
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.4e-07 Score=86.92 Aligned_cols=105 Identities=22% Similarity=0.138 Sum_probs=67.7
Q ss_pred CCCEEEccCCCCcccccccCCC-CCcceeEEECCCCCCC---CcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCc
Q 005619 45 KLEVFQLSMEADLLQVKIENCL-PTFQLKVLSLPNCNLG---VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120 (688)
Q Consensus 45 ~L~~L~Ls~~~~~~~~~~~~~~-~l~~L~~L~l~~n~l~---~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~ 120 (688)
.++.+-+.++.+-..-....|+ .+.+++.+||.+|.|+ ++...+.++|.|++|+++.|.+...|...- ....+|+
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~ 124 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLR 124 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceE
Confidence 3444455444443222222233 3678999999999995 455567899999999999999974443321 2567899
Q ss_pred EEEccCCCCCCCCC---CCCCCCcCEEEccCCC
Q 005619 121 VLYLTNNSFSGFQL---TSAQHGLISLDISSNN 150 (688)
Q Consensus 121 ~L~L~~n~l~~~~~---~~~~~~L~~L~ls~n~ 150 (688)
+|.|.+..+.-... ...++.+++|.+|.|.
T Consensus 125 ~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 125 VLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred EEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 99998876653221 2245566666666663
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.17 E-value=2.6e-07 Score=76.49 Aligned_cols=139 Identities=19% Similarity=0.293 Sum_probs=81.1
Q ss_pred CccEEeCcCCcCCCcCchh---hhcCCCccEEeccCCcCCCCCchhh-cCCCCCCEEEccCCcCccccchhhhhhhhccc
Q 005619 357 ALETLDLRDNYFFGRIPHQ---INEHSNLRALLLRGNYLQGPIPHQL-CQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432 (688)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~ 432 (688)
.+..++|+.|++ +.+++. +.....|+..+|++|.+.. .|..| ...+.++.+++++|.++ .+|..+..
T Consensus 28 E~h~ldLssc~l-m~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa------ 98 (177)
T KOG4579|consen 28 ELHFLDLSSCQL-MYIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAA------ 98 (177)
T ss_pred Hhhhcccccchh-hHHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhh------
Confidence 355666666665 223333 2333456666777777763 33333 33456777777777776 56665543
Q ss_pred CCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCC
Q 005619 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP 512 (688)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 512 (688)
++.|+.|+++.|.+. ..|
T Consensus 99 -------------------------------------------------------------m~aLr~lNl~~N~l~-~~p 116 (177)
T KOG4579|consen 99 -------------------------------------------------------------MPALRSLNLRFNPLN-AEP 116 (177)
T ss_pred -------------------------------------------------------------hHHhhhcccccCccc-cch
Confidence 355667777777776 456
Q ss_pred hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC
Q 005619 513 SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH 567 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 567 (688)
..+..|.++-.|+..+|.+. .+|..+---+..-..++.++.+.+.-+..++.+.
T Consensus 117 ~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 117 RVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred HHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccccC
Confidence 66666778888888888877 4443322222333345566777766665554443
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=3.8e-07 Score=84.51 Aligned_cols=87 Identities=22% Similarity=0.133 Sum_probs=41.7
Q ss_pred cCccceEeeecCccccCC----chhccCCCCccEEeCcCCcCCCcCchhh------hcCCCccEEeccCCcCCCCCchh-
Q 005619 331 LSSVEHLYLQSNALGGSI----PNTIFRGSALETLDLRDNYFFGRIPHQI------NEHSNLRALLLRGNYLQGPIPHQ- 399 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n~l~~~~~~~~------~~l~~L~~L~L~~n~l~~~~~~~- 399 (688)
+.+|+.|++..|.++-.. ...++.++.|+.|.+.+|-++......+ ...|+|..|-..+|.+.+.+-..
T Consensus 213 ~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~ 292 (388)
T COG5238 213 SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDI 292 (388)
T ss_pred hCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeee
Confidence 444555555555443221 1233344555666666665544333222 12355666666666554322111
Q ss_pred ----h--cCCCCCCEEEccCCcCc
Q 005619 400 ----L--CQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 400 ----~--~~l~~L~~L~ls~n~l~ 417 (688)
+ ..++-|..|.+.+|++.
T Consensus 293 ~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 293 SLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred chhhhhhcccHHHHHHHHccCcch
Confidence 1 23555666667777765
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1e-06 Score=97.10 Aligned_cols=110 Identities=16% Similarity=0.102 Sum_probs=53.6
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCCEE
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYL 97 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 97 (688)
.+|++||+++...-...-|...-..|++|+.|.+++-.+....-...+.++++|..||+|+++++.+ ..+.++++|+.|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL 200 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence 3566666665443221122122223566666666554433222222345556666666666666555 445566666666
Q ss_pred ECCCCcCCC-CCchHHhhCCCCCcEEEccCCCC
Q 005619 98 DLSHNKLAG-NFPTWLLENNTKLEVLYLTNNSF 129 (688)
Q Consensus 98 ~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l 129 (688)
.+.+-.+.. ..-..+| ++++|++||+|....
T Consensus 201 ~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLF-NLKKLRVLDISRDKN 232 (699)
T ss_pred hccCCCCCchhhHHHHh-cccCCCeeecccccc
Confidence 665555442 1112233 556666666655443
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.1e-07 Score=93.47 Aligned_cols=293 Identities=18% Similarity=0.111 Sum_probs=162.9
Q ss_pred ceeEEECCCCCC---CCcchhhhCCCCCCEEECCCCc-CCCCCchHHhhCCCCCcEEEccCC-CCCCCC---CCCCCCCc
Q 005619 70 QLKVLSLPNCNL---GVIPNFLLHQFNLKYLDLSHNK-LAGNFPTWLLENNTKLEVLYLTNN-SFSGFQ---LTSAQHGL 141 (688)
Q Consensus 70 ~L~~L~l~~n~l---~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~---~~~~~~~L 141 (688)
.|+.|.+.++.= ..+-....+++++++|++.++. +++..-..+...+++|++|++..| .+++.. ....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 456666666543 2233344556666666666654 222222233445666666666663 333321 12256667
Q ss_pred CEEEccCCC-CCCCCChhhhhcCCCCCEEEccCCCCCcccchhh----hcCCCCCEEEccCCc-CccccCchhhcCCCCC
Q 005619 142 ISLDISSNN-FTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI----GKMQGLRLLDVSSNK-FAGELSQSPVTNCFSL 215 (688)
Q Consensus 142 ~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L 215 (688)
++++++.+. +++.--..+..++..++.+.+.+|.-. ..+.+ +.+..+..+++..+. +++.--..+-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 777766653 343333344445666777766665311 11222 234456666766653 2211111223457788
Q ss_pred CEEEcccCcCC-CcCcccc-cCCCCCCEEeccCCc-CCCcccccc-cCCCCCCEEEccCCcCCCC--CchhhhCCcCCcE
Q 005619 216 EWLQLSNNNFD-GQIFPNY-VNLTRLLFLYLDNNH-FSGKIKDGL-LRSSELMVLDISNNHLSGH--IPSWMGNFSNLYI 289 (688)
Q Consensus 216 ~~L~L~~n~i~-~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-~~~~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~ 289 (688)
+.|+.+++.-. ......+ .++++|+.|.++.++ ++......+ .+++.|+.+++..+..... +...-.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 99998887542 2222222 467899999998886 332221222 3567899999988765422 2222346889999
Q ss_pred EEccccccCCCC-----cccccCCCCCcEEEccCCcCcccccccc--ccCccceEeeecCcccc--CCchhccCCCCccE
Q 005619 290 LSMSKNLLEGNI-----PVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQSNALGG--SIPNTIFRGSALET 360 (688)
Q Consensus 290 L~l~~n~l~~~~-----~~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~ 360 (688)
+.++++...... ...-..+..|+.+.++++.......-.. .+++|+.+++.+++-.. .+...-..++++++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v 456 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKV 456 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCcccee
Confidence 999988653222 2223456778999999987764433222 78899999988875321 22233345666666
Q ss_pred EeCc
Q 005619 361 LDLR 364 (688)
Q Consensus 361 L~l~ 364 (688)
.-+.
T Consensus 457 ~a~~ 460 (483)
T KOG4341|consen 457 HAYF 460 (483)
T ss_pred hhhc
Confidence 5443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.04 E-value=2.9e-06 Score=56.92 Aligned_cols=36 Identities=39% Similarity=0.681 Sum_probs=16.7
Q ss_pred CCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 520 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 520 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
+|++|++++|+|+ .+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3455555555555 23334455555555555555544
|
... |
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.7e-06 Score=55.50 Aligned_cols=37 Identities=32% Similarity=0.381 Sum_probs=27.2
Q ss_pred cceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCC
Q 005619 69 FQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLA 105 (688)
Q Consensus 69 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~ 105 (688)
++|++|++++|+++.+|..+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 3577788888888777777778888888888888776
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=9.2e-06 Score=89.67 Aligned_cols=132 Identities=24% Similarity=0.330 Sum_probs=58.2
Q ss_pred CCCEEECCCCcC-CCCCchHHhhCCCCCcEEEccCCCCCCCC---CCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCE
Q 005619 93 NLKYLDLSHNKL-AGNFPTWLLENNTKLEVLYLTNNSFSGFQ---LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDC 168 (688)
Q Consensus 93 ~L~~L~Ls~n~l-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~ 168 (688)
+|++||+++... ....|......+|+|+.|.+++-.+.... ....+++|..||+|+.+++ .+ .++. .+++|+.
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS-~LknLq~ 199 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGIS-RLKNLQV 199 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHh-ccccHHH
Confidence 445555544332 12223333334455555555444433221 1124455555555555544 22 2222 4555555
Q ss_pred EEccCCCCCc-ccchhhhcCCCCCEEEccCCcCccccCc------hhhcCCCCCCEEEcccCcCCCc
Q 005619 169 MNISKNSFEG-NIPSSIGKMQGLRLLDVSSNKFAGELSQ------SPVTNCFSLEWLQLSNNNFDGQ 228 (688)
Q Consensus 169 L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~------~~~~~l~~L~~L~L~~n~i~~~ 228 (688)
|.+.+=.+.. ..-..+.++++|+.||+|...... .+. +....+|+|+.||.+++.+...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~-~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNND-DTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccccccc-chHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 5554433331 112234455666666665544321 110 0113456777777776666543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.5e-05 Score=68.73 Aligned_cols=85 Identities=18% Similarity=0.275 Sum_probs=45.7
Q ss_pred CCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCccc-chhhhcCCCCCEEE
Q 005619 116 NTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI-PSSIGKMQGLRLLD 194 (688)
Q Consensus 116 l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ 194 (688)
......+||++|.+........++.|..|.+.+|+|+ .|...+...+++|+.|.+.+|++.... -.-+..++.|++|.
T Consensus 41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccccceecccccchhhcccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 3445566666666655555555555666666666665 444445445566666666666554210 11234455555555
Q ss_pred ccCCcCc
Q 005619 195 VSSNKFA 201 (688)
Q Consensus 195 L~~n~l~ 201 (688)
+-+|..+
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5555443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.7e-05 Score=75.43 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=46.3
Q ss_pred ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCC-cCCCCCchhhcCCCCCCE
Q 005619 330 NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN-YLQGPIPHQLCQLRKLSI 408 (688)
Q Consensus 330 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 408 (688)
.+.++++|++++|.++ .+|. -..+|++|.++++.-...+|..+. ++|+.|.+++| .+. .+|. +|+.
T Consensus 50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccce
Confidence 4577888888888776 5552 224688888887544455565442 47888888877 443 3443 4666
Q ss_pred EEccCCc
Q 005619 409 MDLSHNR 415 (688)
Q Consensus 409 L~ls~n~ 415 (688)
|+++.+.
T Consensus 117 L~L~~n~ 123 (426)
T PRK15386 117 LEIKGSA 123 (426)
T ss_pred EEeCCCC
Confidence 6666554
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.3e-05 Score=66.79 Aligned_cols=85 Identities=22% Similarity=0.365 Sum_probs=41.5
Q ss_pred CCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEE
Q 005619 139 HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWL 218 (688)
Q Consensus 139 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 218 (688)
.+...+||++|.+. .++. + ..++.|.+|.+.+|.|+.+.|.--..+++|+.|.+.+|.+........+..|+.|+.|
T Consensus 42 d~~d~iDLtdNdl~-~l~~-l-p~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDN-L-PHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchh-hccc-C-CCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 34455666666553 2211 1 1355566666666666654444444445556666666555422222333444555555
Q ss_pred EcccCcCC
Q 005619 219 QLSNNNFD 226 (688)
Q Consensus 219 ~L~~n~i~ 226 (688)
.+-+|.++
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 55554443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=9.2e-05 Score=64.20 Aligned_cols=62 Identities=15% Similarity=0.292 Sum_probs=22.9
Q ss_pred hhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 157 QNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 157 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
+..+..+++|+.+.+.. .+..+...+|.++++|+.+.+.++ +. .++...|..+++++.+.+.
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEET
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeeccccccccccc
Confidence 33344444555555542 233333444445545555555443 32 3444444444445544443
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=63.29 Aligned_cols=123 Identities=17% Similarity=0.221 Sum_probs=55.5
Q ss_pred hhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCC
Q 005619 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSS 261 (688)
Q Consensus 182 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 261 (688)
.+|.++++|+.+.+.. .+. .++...|..+++|+.+.+..+ +.......|.++++++.+.+.+ .+.......|..++
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 4566667777777764 344 566666777777777777664 5544555666666677777754 33333444555566
Q ss_pred CCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCC
Q 005619 262 ELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAIL 311 (688)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 311 (688)
+|+.+++..+ +.......|.++ +++.+.+.. .+.......|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6777766554 333344455555 666666654 3333445556665554
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0005 Score=70.00 Aligned_cols=78 Identities=14% Similarity=0.196 Sum_probs=54.1
Q ss_pred ccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccE
Q 005619 305 FNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRA 384 (688)
Q Consensus 305 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 384 (688)
+..+.+++.|++++|.++..+ . -..+|++|.+++|.--..+|..+ .++|+.|++++|.....+| .+|+.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-~--LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-V--LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-C--CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 455788999999999877654 2 24579999998865434666554 3589999999983323444 35777
Q ss_pred EeccCCcCC
Q 005619 385 LLLRGNYLQ 393 (688)
Q Consensus 385 L~L~~n~l~ 393 (688)
|++.++...
T Consensus 117 L~L~~n~~~ 125 (426)
T PRK15386 117 LEIKGSATD 125 (426)
T ss_pred EEeCCCCCc
Confidence 888766543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00036 Score=65.31 Aligned_cols=90 Identities=22% Similarity=0.230 Sum_probs=38.3
Q ss_pred chhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCC--CcccccccCCCCCcceeEEECCCCCCCCcc--h
Q 005619 11 PSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEA--DLLQVKIENCLPTFQLKVLSLPNCNLGVIP--N 86 (688)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~--~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp--~ 86 (688)
......+..|+.|.+.+..++. ...+..|++|+.|++|.|. .......- ...+++|++|++++|++..+. .
T Consensus 36 ~gl~d~~~~le~ls~~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 36 GGLTDEFVELELLSVINVGLTT----LTNFPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred ccccccccchhhhhhhccceee----cccCCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccc
Confidence 3334444455555555444432 2234455555555555552 22222211 122355555555555553211 1
Q ss_pred hhhCCCCCCEEECCCCcCC
Q 005619 87 FLLHQFNLKYLDLSHNKLA 105 (688)
Q Consensus 87 ~~~~l~~L~~L~Ls~n~l~ 105 (688)
.+..+.+|..||+.+|..+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 1334444555555555443
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.00018 Score=78.27 Aligned_cols=187 Identities=24% Similarity=0.088 Sum_probs=92.3
Q ss_pred CCCCCCEEECCCCcCCCCC-chHHhhCCCCCcEEEccCC-C-CCCC-----CCCCCCCCcCEEEccCCC-CCCCCChhhh
Q 005619 90 HQFNLKYLDLSHNKLAGNF-PTWLLENNTKLEVLYLTNN-S-FSGF-----QLTSAQHGLISLDISSNN-FTGKLPQNMG 160 (688)
Q Consensus 90 ~l~~L~~L~Ls~n~l~~~~-~~~~~~~l~~L~~L~L~~n-~-l~~~-----~~~~~~~~L~~L~ls~n~-~~~~~~~~~~ 160 (688)
.++.|+.|.+..+.-.... -..+...++.|+.|+++++ . .... .....+.+|+.|+++.+. +++..-..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566666666665322111 1223345666777776652 1 1111 112255677777777766 5544445555
Q ss_pred hcCCCCCEEEccCCC-CCcccch-hhhcCCCCCEEEccCCcCcc-c-cCchhhcCCCCCCEEEcccCcCCCcCcccccCC
Q 005619 161 IVLPKLDCMNISKNS-FEGNIPS-SIGKMQGLRLLDVSSNKFAG-E-LSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNL 236 (688)
Q Consensus 161 ~~l~~L~~L~l~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l~~-~-~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l 236 (688)
..+++|++|.+.++. ++...-. ....++.|++|+++++.... . +... ..++++++.+.+....- +
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~-~~~c~~l~~l~~~~~~~----------c 334 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEAL-LKNCPNLRELKLLSLNG----------C 334 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHH-HHhCcchhhhhhhhcCC----------C
Confidence 457778877766665 4433222 23356778888887765421 1 1122 34466666654433221 3
Q ss_pred CCCCEEeccCCcCC---CcccccccCCCCCCEEEccCCcCCCCC-chhhhCCcCC
Q 005619 237 TRLLFLYLDNNHFS---GKIKDGLLRSSELMVLDISNNHLSGHI-PSWMGNFSNL 287 (688)
Q Consensus 237 ~~L~~L~L~~n~l~---~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L 287 (688)
+.++.+.+...... .........++.++.+.+..+...... ...+..++.|
T Consensus 335 ~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 335 PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 33444444333221 112223455667777777666633222 2334445555
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.00021 Score=77.77 Aligned_cols=188 Identities=21% Similarity=0.138 Sum_probs=77.1
Q ss_pred cCCCCCEEEccCCc-CccccCchhhcCCCCCCEEEcccCc-CCCcCcc-cccCCCCCCEEeccCCcCCC--cccccccCC
Q 005619 186 KMQGLRLLDVSSNK-FAGELSQSPVTNCFSLEWLQLSNNN-FDGQIFP-NYVNLTRLLFLYLDNNHFSG--KIKDGLLRS 260 (688)
Q Consensus 186 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~ 260 (688)
.+++|+.|+++.+. +++..-......|++|+.|.+.++. ++..... ....++.|++|+++.+.... ........+
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34555555555544 3211111222235555555555444 3322211 12345556666666554321 111122334
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC---CCCcccccCCCCCcEEEccCCcCccccc-ccc-ccCccc
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE---GNIPVQFNNLAILQILDISENNLSGSMI-STL-NLSSVE 335 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~-~~~~L~ 335 (688)
++++.|.+....- ++.++.+.+...... .........+++++.+.+..+....... ... +++.|+
T Consensus 321 ~~l~~l~~~~~~~----------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~ 390 (482)
T KOG1947|consen 321 PNLRELKLLSLNG----------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT 390 (482)
T ss_pred cchhhhhhhhcCC----------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc
Confidence 5555544332211 333333333332211 1222334556666666666665333221 111 444441
Q ss_pred eEeeecCccccCCchhccCCCCccEEeCcCCcCCCc-Cchhhhc-CCCccEEeccCCcCC
Q 005619 336 HLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR-IPHQINE-HSNLRALLLRGNYLQ 393 (688)
Q Consensus 336 ~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~-l~~L~~L~L~~n~l~ 393 (688)
..+.. .......++.|+++.+..... .-..... +..++.+++.++...
T Consensus 391 -~~l~~---------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 391 -ESLEL---------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred -hHHHH---------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 11111 111112267777776653221 1111111 556677777666543
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.00066 Score=63.61 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=42.5
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCC--CCCCCCChhhhhcCCCCCEEEccCCCCCcc-cchhhhcCCCCC
Q 005619 115 NNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSN--NFTGKLPQNMGIVLPKLDCMNISKNSFEGN-IPSSIGKMQGLR 191 (688)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n--~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~ 191 (688)
....|+.|++.+..++.......+++|+.|.++.| ++.+.++.-+- .+|+|+++++++|++... --..+..+.+|.
T Consensus 41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e-~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAE-KAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhh-hCCceeEEeecCCccccccccchhhhhcchh
Confidence 34455555555555554444445556666666666 34433333332 346666666666665520 011133444555
Q ss_pred EEEccCCcCc
Q 005619 192 LLDVSSNKFA 201 (688)
Q Consensus 192 ~L~L~~n~l~ 201 (688)
.|++.+|..+
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 5555555433
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.00017 Score=67.62 Aligned_cols=79 Identities=24% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCC-hhhhhcCCCCCEEEccCCCCCcccch-----hhhcCC
Q 005619 115 NNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLP-QNMGIVLPKLDCMNISKNSFEGNIPS-----SIGKMQ 188 (688)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~-----~l~~l~ 188 (688)
+++.|++|.|+-|+++.......|++|++|.|..|.|. .+. -...+++|+|+.|.|..|.-.+..+. .+.-++
T Consensus 39 kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred hcccceeEEeeccccccchhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 44444444444444444433334444444444444443 221 11223566666666666655443332 233455
Q ss_pred CCCEEE
Q 005619 189 GLRLLD 194 (688)
Q Consensus 189 ~L~~L~ 194 (688)
+|+.||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 555554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.00025 Score=66.56 Aligned_cols=101 Identities=20% Similarity=0.175 Sum_probs=75.8
Q ss_pred CCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcch--hhhCCCC
Q 005619 16 NLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN--FLLHQFN 93 (688)
Q Consensus 16 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--~~~~l~~ 93 (688)
++.+.+.|+.-++.+++ .+...+++.|++|.||-|.+..-. .+..|++|+.|+|..|.|..+.+ -+.++++
T Consensus 17 dl~~vkKLNcwg~~L~D----Isic~kMp~lEVLsLSvNkIssL~---pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD----ISICEKMPLLEVLSLSVNKISSLA---PLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccH----HHHHHhcccceeEEeeccccccch---hHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 45677888998998875 345788999999999988765433 36778899999999999877754 4678889
Q ss_pred CCEEECCCCcCCCCCch----HHhhCCCCCcEEE
Q 005619 94 LKYLDLSHNKLAGNFPT----WLLENNTKLEVLY 123 (688)
Q Consensus 94 L~~L~Ls~n~l~~~~~~----~~~~~l~~L~~L~ 123 (688)
|+.|-|..|.-.|.-+. .++.-+++|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998877655443 2345677777775
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.0028 Score=35.18 Aligned_cols=19 Identities=47% Similarity=0.754 Sum_probs=8.8
Q ss_pred CCeEeCCCCcccccCCcCCC
Q 005619 545 IESLDLSHNKLNGQIPPQLT 564 (688)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~l~ 564 (688)
|++|||++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555555 3443343
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.0038 Score=34.65 Aligned_cols=20 Identities=60% Similarity=0.760 Sum_probs=10.1
Q ss_pred CCeeeCCCCcCccCCCccccC
Q 005619 521 IHGLNLSHNFLSGSIPESFSN 541 (688)
Q Consensus 521 L~~L~Ls~N~l~~~~p~~~~~ 541 (688)
|+.|||++|+++ .+|..|++
T Consensus 2 L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEES-EEGTTTTT
T ss_pred ccEEECCCCcCE-eCChhhcC
Confidence 455555555555 44444443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.00054 Score=72.60 Aligned_cols=60 Identities=32% Similarity=0.407 Sum_probs=34.3
Q ss_pred ccEEEccCCccccc----CChhhhcc-CCCCeeeCCCCcCccCC----CccccCCCCCCeEeCCCCccc
Q 005619 497 MAGLDLSSNKLTGD----IPSEICDL-QNIHGLNLSHNFLSGSI----PESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 497 L~~LdLs~N~l~~~----~p~~~~~l-~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
+..+++++|.+.+. ....+..+ ..++.++++.|+|+..- ...+..++.++.+.++.|.+.
T Consensus 235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 34466666666532 22333444 45667777777776432 334555667777777777666
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.039 Score=28.31 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=4.9
Q ss_pred eeEEECCCCCCCCc
Q 005619 71 LKVLSLPNCNLGVI 84 (688)
Q Consensus 71 L~~L~l~~n~l~~l 84 (688)
|+.|++++|+++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
|
... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.0035 Score=57.51 Aligned_cols=84 Identities=20% Similarity=0.236 Sum_probs=72.2
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
+...+.||++.|++. -.-..|+.++.|..|++|.|++. ..|..++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 455778999999987 34456888899999999999998 78888999999999999999988 6788899999999999
Q ss_pred cCCCcCc
Q 005619 574 VSYNDLS 580 (688)
Q Consensus 574 ls~N~l~ 580 (688)
+-+|++.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 9999864
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.0011 Score=70.24 Aligned_cols=19 Identities=32% Similarity=0.347 Sum_probs=9.7
Q ss_pred hhhhcCCCCCEEEccCCcC
Q 005619 182 SSIGKMQGLRLLDVSSNKF 200 (688)
Q Consensus 182 ~~l~~l~~L~~L~L~~n~l 200 (688)
+.+.....++.++++.|.+
T Consensus 166 ~~L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 166 AVLEKNEHLTELDLSLNGL 184 (478)
T ss_pred HHHhcccchhHHHHHhccc
Confidence 3344445555555555554
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.15 Score=29.58 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=7.8
Q ss_pred CCCCeEeCCCCcccc
Q 005619 543 KMIESLDLSHNKLNG 557 (688)
Q Consensus 543 ~~L~~L~Ls~N~l~~ 557 (688)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555553
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.15 Score=29.58 Aligned_cols=15 Identities=40% Similarity=0.607 Sum_probs=7.8
Q ss_pred CCCCeEeCCCCcccc
Q 005619 543 KMIESLDLSHNKLNG 557 (688)
Q Consensus 543 ~~L~~L~Ls~N~l~~ 557 (688)
++|+.|+|++|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555555553
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.18 Score=29.17 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=14.0
Q ss_pred cCCCCeeeCCCCcCccCCCccc
Q 005619 518 LQNIHGLNLSHNFLSGSIPESF 539 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~ 539 (688)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777777777774444444
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.18 Score=29.17 Aligned_cols=22 Identities=45% Similarity=0.634 Sum_probs=14.0
Q ss_pred cCCCCeeeCCCCcCccCCCccc
Q 005619 518 LQNIHGLNLSHNFLSGSIPESF 539 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~ 539 (688)
+++|+.|+|++|+|+...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4567777777777774444444
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.99 E-value=0.2 Score=28.35 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=10.5
Q ss_pred CCCCEEEccCCcCccccchh
Q 005619 404 RKLSIMDLSHNRLNGSIPAC 423 (688)
Q Consensus 404 ~~L~~L~ls~n~l~~~~p~~ 423 (688)
++|+.|+|++|+|++..+..
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 56666777777666544433
|
... |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=86.63 E-value=0.43 Score=59.81 Aligned_cols=37 Identities=27% Similarity=0.223 Sum_probs=33.7
Q ss_pred eCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 549 DLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 549 ~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
||++|+|+.+.+..|..+++|+.|+|++|++.|.|..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L 37 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGL 37 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccccccc
Confidence 6899999988888999999999999999999999964
|
Note: this model has been restricted to the amino half because for technical reasons. |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.77 E-value=0.14 Score=46.40 Aligned_cols=34 Identities=26% Similarity=0.194 Sum_probs=15.4
Q ss_pred CCccEEeCcCC-cCCCcCchhhhcCCCccEEeccC
Q 005619 356 SALETLDLRDN-YFFGRIPHQINEHSNLRALLLRG 389 (688)
Q Consensus 356 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 389 (688)
++|+.|++++| +|+...-.++..+++|+.|.+.+
T Consensus 151 ~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 151 PSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred cchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 34555555544 23333334444455555554443
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.30 E-value=0.039 Score=50.89 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=50.0
Q ss_pred CccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEc
Q 005619 332 SSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDL 411 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 411 (688)
...+.||++.|++. ..-..+..++.+..||++.|++ ...|..++....+..+++..|..+ ..|.++...+.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 34445555555443 2223334445566666666666 445666666666667777666665 56667777777777777
Q ss_pred cCCcCc
Q 005619 412 SHNRLN 417 (688)
Q Consensus 412 s~n~l~ 417 (688)
..|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 777654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.11 E-value=0.38 Score=43.72 Aligned_cols=60 Identities=17% Similarity=0.134 Sum_probs=31.8
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCC-CcceeEEECCCC
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLP-TFQLKVLSLPNC 79 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~-l~~L~~L~l~~n 79 (688)
..++.+|-++..|.. +.++.+.+++.++.|.+.+|.-..+...+.+++ .++|+.|++++|
T Consensus 101 ~~IeaVDAsds~I~~--eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC 161 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMY--EGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGC 161 (221)
T ss_pred ceEEEEecCCchHHH--HHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCC
Confidence 346778888777653 334556666666666666665443332222221 234444444444
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 688 | ||||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-62 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-31 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 2e-18 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 4e-62 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 6e-31 | ||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 5e-18 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-14 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 1e-10 | ||
| 2z63_A | 570 | Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A | 2e-05 | ||
| 3j0a_A | 844 | Homology Model Of Human Toll-Like Receptor 5 Fitted | 2e-05 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 9e-05 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 2e-04 | ||
| 2z66_A | 306 | Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A | 3e-04 | ||
| 3t6q_A | 606 | Crystal Structure Of Mouse Rp105MD-1 Complex Length | 9e-04 |
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570 | Back alignment and structure |
|
| >pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into An Electron Microscopy Single Particle Reconstruction Length = 844 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
| >pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306 | Back alignment and structure |
|
| >pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 496 bits (1279), Expect = e-166
Identities = 199/625 (31%), Positives = 299/625 (47%), Gaps = 19/625 (3%)
Query: 2 SSNQLSGILP-SVIANLTSLEYLALYDNKFKGRL-FSFCSLANLSKLEVFQLSMEADLLQ 59
SSN L S L SLE L L N G + +L+ +S +
Sbjct: 134 SSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK--IS 191
Query: 60 VKIENCLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
++ L+ L + + N IP FL L++LD+S NKL+G+F + T+
Sbjct: 192 GDVDVSRCV-NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAIS-TCTE 248
Query: 119 LEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
L++L +++N F G L L ++ N FTG++P + L +++S N F G
Sbjct: 249 LKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT- 237
+P G L L +SSN F+GEL + L+ L LS N F G++ + NL+
Sbjct: 309 AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA 368
Query: 238 RLLFLYLDNNHFSGKIKDGLLRS--SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
LL L L +N+FSG I L ++ + L L + NN +G IP + N S L L +S N
Sbjct: 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN 428
Query: 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFR 354
L G IP +L+ L+ L + N L G + L + ++E L L N L G IP+ +
Sbjct: 429 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 488
Query: 355 GSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
+ L + L +N G IP I NL L L N G IP +L R L +DL+ N
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548
Query: 415 RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG- 473
NG+IPA + K+ + +++G V + + + + L GI L
Sbjct: 549 LFNGTIPAAMFKQSG-KIAANFIAGKRYVYIK-NDGMKKECHGAGNLLEFQGIRSEQLNR 606
Query: 474 -TQVEVNFMTKNRY---ESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHN 529
+ +T Y S M LD+S N L+G IP EI + + LNL HN
Sbjct: 607 LSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHN 666
Query: 530 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589
+SGSIP+ +L+ + LDLS NKL+G+IP ++ L L++ D+S N+LSGPIP+ QF
Sbjct: 667 DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
Query: 590 STFDESSYRGNLHLCGPPINKSCTN 614
TF + + N LCG P+ + +
Sbjct: 727 ETFPPAKFLNNPGLCGYPLPRCDPS 751
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 319 bits (820), Expect = 1e-98
Identities = 148/572 (25%), Positives = 241/572 (42%), Gaps = 61/572 (10%)
Query: 71 LKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL-LENNTKLEVLYLTNNS 128
L+ L L N ++ G + F +L LDLS N L+G T L + + L+ L +++N+
Sbjct: 79 LESLFLSNSHINGSVSGFKCSA-SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT 137
Query: 129 FSGFQLTSAQHGLISL---DISSNNFTGKLPQNMGIV--LPKLDCMNISKNSFEGNIPSS 183
S L SL D+S+N+ +G + +L + IS N G++
Sbjct: 138 LDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-- 195
Query: 184 IGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLY 243
+ + L LDVSSN F+ + + +C +L+ L +S N G T L L
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253
Query: 244 LDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM-GNFSNLYILSMSKNLLEGNIP 302
+ +N F G I L+S L L ++ N +G IP ++ G L L +S N G +P
Sbjct: 254 ISSNQFVGPIPPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Query: 303 VQFNNLAILQILDISENNLSGS--MISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA-LE 359
F + ++L+ L +S NN SG M + L + ++ L L N G +P ++ SA L
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLL 371
Query: 360 TLDLRDNYFFGRIPHQI--NEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
TLDL N F G I + N + L+ L L+ N G IP L +L + LS N L+
Sbjct: 372 TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS 431
Query: 418 GSIPACI---TNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYN-STVQLSLDGIDG---R 470
G+IP+ + + L K+ L G + ++ T+ L + + G
Sbjct: 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIP-------QELMYVKTLETLILDFNDLTGEIPS 484
Query: 471 SLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF 530
L + + LS+N+LTG+IP I L+N+ L LS+N
Sbjct: 485 GLSN-------------------CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS 525
Query: 531 LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP----DK 586
SG+IP + + + LDL+ N NG IP + + ++ N ++G +
Sbjct: 526 FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ----SGKIAANFIAGKRYVYIKND 581
Query: 587 EQFSTFDESSYRGNLHLCGPPINKSCTNLLEL 618
+ +
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 274 bits (704), Expect = 5e-82
Identities = 135/441 (30%), Positives = 202/441 (45%), Gaps = 49/441 (11%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
N + S + +LT LE L L ++ G + F A+L
Sbjct: 60 KPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASL----------------- 102
Query: 61 KIENCLPTFQLKVLSLPNCNL-GVIPNF--LLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117
L L +L G + L LK+L++S N L
Sbjct: 103 -----------TSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN 151
Query: 118 KLEVLYLTNNSFSG-----FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNIS 172
LEVL L+ NS SG + L+ L L IS N +G + + L+ +++S
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSR---CVNLEFLDVS 208
Query: 173 KNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN 232
N+F IP +G L+ LD+S NK +G+ S++ ++ C L+ L +S+N F G I P
Sbjct: 209 SNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQFVGPIPPL 266
Query: 233 YVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILS 291
L L +L L N F+G+I D L + L LD+S NH G +P + G+ S L L+
Sbjct: 267 --PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLA 324
Query: 292 MSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLS-SVEHLYLQSNALGGSI 348
+S N G +P+ + L++LD+S N SG + +L NLS S+ L L SN G I
Sbjct: 325 LSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI 384
Query: 349 PNTIFRG--SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
+ + + L+ L L++N F G+IP ++ S L +L L NYL G IP L L KL
Sbjct: 385 LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKL 444
Query: 407 SIMDLSHNRLNGSIPACITNL 427
+ L N L G IP + +
Sbjct: 445 RDLKLWLNMLEGEIPQELMYV 465
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 1e-51
Identities = 73/270 (27%), Positives = 117/270 (43%), Gaps = 13/270 (4%)
Query: 165 KLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224
+D + N + SS+ + GL L +S++ G +S SL L LS N+
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS--GFKCSASLTSLDLSRNS 111
Query: 225 FDGQIFPNY--VNLTRLLFLYLDNNHFSGKIKD-GLLRSSELMVLDISNNHLSGHIPSWM 281
G + + + L FL + +N K G L+ + L VLD+S N +SG
Sbjct: 112 LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171
Query: 282 ---GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLY 338
L L++S N + G++ + L+ LD+S NN S + + S+++HL
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229
Query: 339 LQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398
+ N L G I + L+ L++ N F G IP +L+ L L N G IP
Sbjct: 230 ISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPD 287
Query: 399 QLC-QLRKLSIMDLSHNRLNGSIPACITNL 427
L L+ +DLS N G++P +
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSC 317
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 7e-40
Identities = 68/319 (21%), Positives = 123/319 (38%), Gaps = 49/319 (15%)
Query: 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQS 341
+++ + S N+ + +L L+ L +S ++++GS+ +S+ L L
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 342 NALGGSIP--NTIFRGSALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPH 398
N+L G + ++ S L+ L++ N ++L L L N + G
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 399 QLCQ---LRKLSIMDLSHNRLNGSIPAC-ITNLLFWKVGSRYLSGFV--------MVVMD 446
+L + +S N+++G + NL F V S S + + +D
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLD 229
Query: 447 LGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNK 506
+ N L G R++ T E+ L++SSN+
Sbjct: 230 IS-------GN-----KLSGDFSRAISTCTELKL-------------------LNISSNQ 258
Query: 507 LTGDIPSEICDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNGQIPPQLTE 565
G IP L+++ L+L+ N +G IP+ + LDLS N G +PP
Sbjct: 259 FVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 566 LHSLSKFDVSYNDLSGPIP 584
L +S N+ SG +P
Sbjct: 317 CSLLESLALSSNNFSGELP 335
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 4e-32
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 14/203 (6%)
Query: 235 NLTRLLFLYLDNNHFS---GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291
++ + L + + + LL + L L +SN+H++G + ++L L
Sbjct: 48 RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLD 106
Query: 292 MSKNLLEGNIP--VQFNNLAILQILDISENNLSGSMIST--LNLSSVEHLYLQSNALGGS 347
+S+N L G + + + L+ L++S N L + L L+S+E L L +N++ G+
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA 166
Query: 348 IPNTIFRG---SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLR 404
L+ L + N G + ++ NL L + N IP L
Sbjct: 167 NVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCS 223
Query: 405 KLSIMDLSHNRLNGSIPACITNL 427
L +D+S N+L+G I+
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTC 246
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-23
Identities = 46/236 (19%), Positives = 83/236 (35%), Gaps = 54/236 (22%)
Query: 358 LETLDLRDNYF---FGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
+ ++DL F + + + L +L L +++ G + L+ +DLS N
Sbjct: 52 VTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRN 110
Query: 415 RLNGSIPA--CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSL 472
L+G + + + + +++ N + ++S G+ SL
Sbjct: 111 SLSGPVTTLTSLGSCSG------------LKFLNVS----SNTLDFPGKVSG-GLKLNSL 153
Query: 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGL---NLSHN 529
LDLS+N ++G L +S N
Sbjct: 154 EV-------------------------LDLSANSISGANVVGWVLSDGCGELKHLAISGN 188
Query: 530 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
+SG + S +E LD+S N + I P L + +L D+S N LSG
Sbjct: 189 KISGDVD--VSRCVNLEFLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSR 241
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 8e-11
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 516 CDLQNIHGLNLSHNFLS---GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 572
C + ++LS L+ ++ S +L +ESL LS++ +NG + SL+
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105
Query: 573 DVSYNDLSGPIPDKEQFS 590
D+S N LSGP+
Sbjct: 106 DLSRNSLSGPVTTLTSLG 123
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 249 bits (639), Expect = 2e-73
Identities = 119/631 (18%), Positives = 219/631 (34%), Gaps = 65/631 (10%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ N +S + P + L L+ L L N+ S + A + L L + ++
Sbjct: 56 VGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTELHLM-SNSIQKI 112
Query: 61 KIENCLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL-LENNTK 118
K + L L L + L + NL+ L LS+NK+ L + N+
Sbjct: 113 KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172
Query: 119 LEVLYLTNNSFSGFQLTS--AQHGLISLDISSNNFTGKLPQN--MGIVLPKLDCMNISKN 174
L+ L L++N F A L L +++ L + + + + +++S +
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232
Query: 175 SFEGNIPSSIGKMQG--LRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN 232
++ ++ L +LD+S N + LE+ L NN +
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHS 291
Query: 233 YVNLTRLLFLYLDNNHFSGKIKDGLLRS---------SELMVLDISNNHLSGHIPSWMGN 283
L + +L L + I L L L++ +N + G +
Sbjct: 292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG 351
Query: 284 FSNLYILSMSKNLLEGN--IPVQFNNLAI--LQILDISENNLSGSMISTL-NLSSVEHLY 338
NL LS+S + F +LA L IL++++N +S L +E L
Sbjct: 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD 411
Query: 339 LQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG--P 395
L N +G + +RG + + L N + + +L+ L+LR L+
Sbjct: 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDS 471
Query: 396 IPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNY 455
P LR L+I+DLS+N + + L + ++DL N
Sbjct: 472 SPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK------------LEILDLQ----HNN 515
Query: 456 YNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEI 515
+ + G L L ++ L+L SN
Sbjct: 516 LARLWKHANPGGPIYFLK-------------------GLSHLHILNLESNGFDEIPVEVF 556
Query: 516 CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKFDV 574
DL + ++L N L+ F+N ++SL+L N + +L++ D+
Sbjct: 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDM 616
Query: 575 SYNDLSGPIPDKEQFSTFDESSYRGNLHLCG 605
+N F + ++ L
Sbjct: 617 RFNPFDCTCESIAWFVNWINETHTNIPELSS 647
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 213 bits (544), Expect = 4e-60
Identities = 105/518 (20%), Positives = 187/518 (36%), Gaps = 49/518 (9%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQH--GLISLDISSNN 150
+ + D SH KL P L N + VL LT+N + L SLD+ N
Sbjct: 5 SHEVADCSHLKLT-QVPDDLPTN---ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 151 FTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVT 210
+ P+ LP L +N+ N + L L + SN + +P
Sbjct: 61 ISKLEPELCQK-LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFV 118
Query: 211 NCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDI 268
+L L LS+N V L L L L NN + + +S L L++
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF---NNLAILQILDISENNLSG-- 323
S+N + P L+ L ++ L ++ + ++ L +S + LS
Sbjct: 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS 238
Query: 324 -SMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL 382
+ L +++ L L N L ++ LE L N H ++ N+
Sbjct: 239 NTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNV 298
Query: 383 RALLLRGNY---------LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVG 433
R L L+ ++ L L+ L +++ N + G T L
Sbjct: 299 RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL------ 352
Query: 434 SRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493
++L + N + S L+ + + + + + +TKN+ +
Sbjct: 353 -----------INLKYLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDA 400
Query: 494 LDYMA---GLDLSSNKLTGDIP-SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549
++ LDL N++ ++ E L+NI + LS+N SF+ + ++ L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 550 LSHNKLNG--QIPPQLTELHSLSKFDVSYNDLSGPIPD 585
L L P L +L+ D+S N+++ D
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 1e-50
Identities = 85/459 (18%), Positives = 162/459 (35%), Gaps = 51/459 (11%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF 200
D S T ++P + + + +N++ N ++ + L LDV N
Sbjct: 6 HEVADCSHLKLT-QVPDD---LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 201 AGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS 260
+ L L+ L L +N + T L L+L +N + ++
Sbjct: 62 SK-LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAI--LQILDISE 318
L+ LD+S+N LS NL L +S N ++ + + A L+ L++S
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 319 NNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIF---RGSALETLDLRDNYFFGRIPH 374
N + + + L+L + LG S+ + +++ L L ++
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 375 QIN--EHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432
+ +NL L L N L L +L L +N + + L
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL----- 295
Query: 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492
F + ++L + + + SL ID S +
Sbjct: 296 -------FNVRYLNLKRSFTKQSISLA---SLPKIDDFSFQWLKCLEH------------ 333
Query: 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGS--IPESFSNLKM--IESL 548
L++ N + G + L N+ L+LS++F S E+F +L + L
Sbjct: 334 -------LNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 549 DLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKE 587
+L+ NK++ + L L D+ N++ + +E
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 2e-44
Identities = 87/422 (20%), Positives = 148/422 (35%), Gaps = 60/422 (14%)
Query: 190 LRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHF 249
+ D S K L+Q P ++ L L++N N+ ++L L + N
Sbjct: 6 HEVADCSHLK----LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTI 61
Query: 250 SGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLA 309
S + + L VL++ +N LS +NL L + N ++ F
Sbjct: 62 SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQK 121
Query: 310 ILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTI--FRGSALETLDLRDN 366
L LD+S N LS + + T L +++ L L +N + + F S+L+ L+L N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181
Query: 367 YFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLC---QLRKLSIMDLSHNRLNGSIPAC 423
P + L L L L + +LC + + LS+++L+ +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241
Query: 424 ITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTK 483
L + + ++DL YN+ L+ + S
Sbjct: 242 FLGLKWTN----------LTMLDL-------SYNN-----LNVVGNDSFAW--------- 270
Query: 484 NRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSI-------- 535
L + L N + + L N+ LNL +F SI
Sbjct: 271 ----------LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKI 320
Query: 536 -PESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDE 594
SF LK +E L++ N + G T L +L +S + S E F +
Sbjct: 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAH 380
Query: 595 SS 596
S
Sbjct: 381 SP 382
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-41
Identities = 77/384 (20%), Positives = 136/384 (35%), Gaps = 49/384 (12%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLS---MEADLL 58
S L I L LE+L + DN G L L+ LS L
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPG--IKSNMFTGLINLKYLSLSNSFTSLRTL 370
Query: 59 QVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNT 117
+ L L +L+L + I + +L+ LDL N++
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
+ +YL+ N + ++ N+F +P L + + + + +
Sbjct: 431 NIFEIYLSYNKYLQ--------------LTRNSFAL---------VPSLQRLMLRRVALK 467
Query: 178 G--NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN--------FDG 227
+ PS ++ L +LD+S+N A ++ + LE L L +NN G
Sbjct: 468 NVDSSPSPFQPLRNLTILDLSNNNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPG 526
Query: 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNL 287
L+ L L L++N F + EL ++D+ N+L+ S N +L
Sbjct: 527 GPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSL 586
Query: 288 YILSMSKNLLEGNIPVQF-NNLAILQILDISENNLSGS------MISTLNLSSVEHLYLQ 340
L++ KNL+ F L LD+ N + ++ +N + L
Sbjct: 587 KSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELS 646
Query: 341 SNALGGSIPNTIFRGSALETLDLR 364
S+ L + P+ + G + D
Sbjct: 647 SHYLCNTPPH--YHGFPVRLFDTS 668
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 3e-35
Identities = 66/357 (18%), Positives = 124/357 (34%), Gaps = 54/357 (15%)
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
+ + ++ D L + + VL++++N L + +S L L + N
Sbjct: 4 VSHEVADCSHLKLT-QVPDDLPTN--ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG 355
+ P L +L++L++ N LS T +++ L+L SN++ N +
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 356 SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH--QLCQLRKLSIMDLSH 413
L TLDL N + NL+ LLL N +Q + L ++LS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 414 NRLNGSIPAC---ITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470
N++ P C I L + L + +
Sbjct: 181 NQIKEFSPGCFHAIGRL---------------FGLFLN-------NVQLGPSLTEKLCLE 218
Query: 471 SLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQ--NIHGLNLSH 528
T + L LS+++L+ + L+ N+ L+LS+
Sbjct: 219 LANTSIRN---------------------LSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257
Query: 529 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
N L+ +SF+ L +E L +N + L L ++ ++ + I
Sbjct: 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 7e-34
Identities = 66/332 (19%), Positives = 113/332 (34%), Gaps = 50/332 (15%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ V D S+ L+ +P + +N+ +L+++ N L F + L LD+ N
Sbjct: 3 TVSHEVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN 59
Query: 320 NLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINE 378
+S L ++ L LQ N L T + L L L N + +
Sbjct: 60 TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVK 119
Query: 379 HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438
NL L L N L QL L + LS+N++ + + + L
Sbjct: 120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA-----LKSEELDIFANSSL- 173
Query: 439 GFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA 498
++L N + +
Sbjct: 174 ----KKLEL-------SSNQ-----IKEFSPGCFHAIGRLFG------------------ 199
Query: 499 GLDLSSNKLTGDIPSEICD---LQNIHGLNLSHNFLSGSIPESFSNLKM--IESLDLSHN 553
L L++ +L + ++C +I L+LS++ LS + +F LK + LDLS+N
Sbjct: 200 -LFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258
Query: 554 KLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
LN L L F + YN++
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 222 bits (569), Expect = 5e-64
Identities = 80/612 (13%), Positives = 177/612 (28%), Gaps = 123/612 (20%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKG--RLFSFCSLANLSKLEVFQLSMEADLLQ 59
SG +P I LT LE LAL + K RLF ++ E Q
Sbjct: 89 EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKM------- 141
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTW----LLEN 115
+ F+ + + DL + + +
Sbjct: 142 --------------------RMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181
Query: 116 NTKLEVLYLTNNSFSG-----FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMN 170
K + +N+ + +LT L + ++ F + + N
Sbjct: 182 TLKDTQIGQLSNNITFVSKAVMRLTK----LRQFYMGNSPFVAENI------CEAWENEN 231
Query: 171 ISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF----- 225
++ L ++V + +L + ++ + ++ N
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQ 290
Query: 226 ---DGQIFPNYVNLTRLLFLYLDNNHF-SGKIKDGLLRSSELMVLDISNNHLSGHIPSWM 281
D Q + ++ +Y+ N+ + ++ L + +L +L+ N L G +P+
Sbjct: 291 LKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-F 349
Query: 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG--SMISTLNLSSVEHLYL 339
G+ L L+++ N + ++ L + N L ++ ++S + +
Sbjct: 350 GSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409
Query: 340 QSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQ 399
N +G F + + N+ ++ L N +
Sbjct: 410 SYNEIGSVDGKN-----------------FDPLDPTPFKGINVSSINLSNNQISKFPKEL 452
Query: 400 LCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNST 459
LS ++L N L + + + L +DL +N
Sbjct: 453 FSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLL-----TSIDLR-------FN-- 498
Query: 460 VQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQ 519
+L+ L + +DLS N + P++ +
Sbjct: 499 -KLT-------KLSDDFRATTLPYLVG-------------IDLSYNSFSK-FPTQPLNSS 536
Query: 520 NI------HGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573
+ + + N PE + + L + N + + ++ ++S D
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLD 593
Query: 574 VSYNDLSGPIPD 585
+ N
Sbjct: 594 IKDNPNISIDLS 605
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 7e-55
Identities = 78/544 (14%), Positives = 153/544 (28%), Gaps = 79/544 (14%)
Query: 75 SLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ 133
+ G P L+ + L L +G P + T+LEVL L ++ +
Sbjct: 63 NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQLTELEVLALGSHGEKVNE 121
Query: 134 LTS------AQHGLISLDISSNNFTGKLPQNMG-IVLPKLDCMNISKNSFEGNIPSSIGK 186
A ++ L I+ + + +I S
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRI 181
Query: 187 MQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDN 246
+ SN +S++ V L + N+ F + +
Sbjct: 182 TLKDTQIGQLSNNI-TFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWEN-----ENSEY 234
Query: 247 NHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL--------E 298
+L +++ N +P+++ + +++++ N +
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294
Query: 299 GNIPVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIFRGS 356
+QI+ I NNL + T + + L N L G +P
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI 353
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG-PIPHQLCQLRKLSIMDLSHNR 415
L +L+L N + + L N L+ P + +S +D S+N
Sbjct: 354 KLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE 413
Query: 416 LNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQ 475
+ L +S ++L N + T
Sbjct: 414 IGSVDGKNFDPLDPTPFKGINVS-----SINLS-------NNQ-----ISKFPKELFSTG 456
Query: 476 VEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG-------DIPSEICDLQNIHGLNLSH 528
++ ++L N LT D + + ++L
Sbjct: 457 SPLSS-------------------INLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF 497
Query: 529 NFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF------DVSYNDLSG 581
N L+ + + L + +DLS+N + P Q +L F D N
Sbjct: 498 NKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR 556
Query: 582 PIPD 585
P+
Sbjct: 557 EWPE 560
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 184 bits (470), Expect = 2e-50
Identities = 69/455 (15%), Positives = 152/455 (33%), Gaps = 60/455 (13%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
SN ++ + + LT L + ++ F + C E Q DL
Sbjct: 190 QLSNNITFV-SKAVMRLTKLRQFYMGNSPFVA--ENICEAWENENSEYAQQYKTEDLKWD 246
Query: 61 KIENCLPTFQLKVLSLPNCN-LGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+++ L + + NC L +P FL ++ ++++ N+ +
Sbjct: 247 NLKD------LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQLKDDWQALA 299
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNF-TGKLPQNMGIVLPKLDCMNISKNSFEG 178
+ + + I NN T + ++ + KL + N EG
Sbjct: 300 DAPVGEK--------------IQIIYIGYNNLKTFPVETSLQ-KMKKLGMLECLYNQLEG 344
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV---N 235
+P+ G L L+++ N+ + + +E L ++N + PN +
Sbjct: 345 KLPA-FGSEIKLASLNLAYNQITE-IPANFCGFTEQVENLSFAHNKL--KYIPNIFDAKS 400
Query: 236 LTRLLFLYLDNNHFSG-------KIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288
++ + + N + + + +++SNN +S S L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 289 ILSMSKNLLEG-------NIPVQFNNLAILQILDISENNLSG--SMISTLNLSSVEHLYL 339
+++ N+L + F N +L +D+ N L+ L + + L
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL 520
Query: 340 QSNALGGSIPNTIFRGSALETLDLRD------NYFFGRIPHQINEHSNLRALLLRGNYLQ 393
N+ P S L+ +R+ N P I +L L + N ++
Sbjct: 521 SYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR 579
Query: 394 GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428
+ ++ +S++D+ N + + +
Sbjct: 580 K-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYI 611
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-30
Identities = 49/318 (15%), Positives = 104/318 (32%), Gaps = 53/318 (16%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
++ NQ++ I + +E L+ NK K + + ++S + S
Sbjct: 360 LAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFS-------- 410
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
N + S+ N + N+ ++LS+N+++ FP L + L
Sbjct: 411 --YNEI-------GSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLS 460
Query: 121 VLYLTNNSFSGFQLTSAQ---------HGLISLDISSNNFTGKLPQNMGIV-LPKLDCMN 170
+ L N + S + + L S+D+ N T L + LP L ++
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGID 519
Query: 171 ISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230
+S NSF P+ L+ + + N +
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQ-------------------RDAQGNRTLREWP 559
Query: 231 PNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290
L L + +N + + + + + VLDI +N S++ + +
Sbjct: 560 EGITLCPSLTQLQIGSNDIRK-VNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMY 616
Query: 291 SMSKNLLEGNIPVQFNNL 308
+ + + ++
Sbjct: 617 MLFYDKTQDIRGCDALDI 634
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 7e-21
Identities = 26/249 (10%), Positives = 67/249 (26%), Gaps = 27/249 (10%)
Query: 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP----IPHQLCQLRKLSIMDLSH 413
+ L L GR+P I + + L L L + + P +
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR 142
Query: 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473
+ F + ++ + ++ + + +
Sbjct: 143 MHYQKTFVDYDPREDFSDLIKDCINSD-----PQQKSIKKSSRITLKDTQIGQLSNNITF 197
Query: 474 TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSG 533
V +TK R + ++ + E + N +
Sbjct: 198 VSKAVMRLTKLRQ-------------FYMGNSPFVAENICEAWEN-----ENSEYAQQYK 239
Query: 534 SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFD 593
+ + NLK + +++ + ++P L L + +V+ N K+ +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 594 ESSYRGNLH 602
++ +
Sbjct: 300 DAPVGEKIQ 308
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 5e-13
Identities = 22/107 (20%), Positives = 41/107 (38%), Gaps = 15/107 (14%)
Query: 500 LDLSSNKLTG-------DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552
+D S N++ + N+ +NLS+N +S E FS + S++L
Sbjct: 407 IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466
Query: 553 NKLNG-------QIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
N L + L+ D+ +N L+ + D + +T
Sbjct: 467 NMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTL 512
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 8e-09
Identities = 19/116 (16%), Positives = 34/116 (29%), Gaps = 8/116 (6%)
Query: 509 GDIPSEICD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ----IPPQL 563
G P + + GL+L SG +P++ L +E L L + P +
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 564 TELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELL 619
+ S + D + F + + P KS +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK---DCINSDPQQKSIKKSSRIT 182
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 1e-04
Identities = 17/151 (11%), Positives = 39/151 (25%), Gaps = 8/151 (5%)
Query: 475 QVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGS 534
V + Y + + L+ + G + N +
Sbjct: 17 IVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF----NKELDMWGAQ 72
Query: 535 IPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGP----IPDKEQFS 590
S ++ + L L +G++P + +L L + + P +
Sbjct: 73 PGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISAN 132
Query: 591 TFDESSYRGNLHLCGPPINKSCTNLLELLET 621
DE + +H ++ L
Sbjct: 133 MSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 210 bits (538), Expect = 7e-63
Identities = 83/351 (23%), Positives = 126/351 (35%), Gaps = 66/351 (18%)
Query: 279 SWMGNFSNLYILS-------MSKNLLEGNIPVQFNNLAILQILDISENNLSGSM-ISTL- 329
+ N LS G + + LD+S NL I +
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 330 -NLSSVEHLYLQS-NALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLL 387
NL + LY+ N L G IP I + + L L + G IP +++ L L
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 388 RGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDL 447
N L G +P + L L + NR++G+IP +
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS------------------- 173
Query: 448 GVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDL----- 502
+++ N +T G I A L+L
Sbjct: 174 ---------KLFTSMTISR------------NRLT--------GKIPPTFANLNLAFVDL 204
Query: 503 SSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562
S N L GD +N ++L+ N L+ + K + LDL +N++ G +P
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT 613
LT+L L +VS+N+L G IP FD S+Y N LCG P+ +CT
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 191 bits (489), Expect = 8e-56
Identities = 68/256 (26%), Positives = 112/256 (43%), Gaps = 4/256 (1%)
Query: 170 NISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSP-VTNCFSLEWLQLSN-NNFDG 227
+ ++ G + + + + LD+S + N L +L + NN G
Sbjct: 32 DCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG 91
Query: 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNL 287
I P LT+L +LY+ + + SG I D L + L+ LD S N LSG +P + + NL
Sbjct: 92 PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 288 YILSMSKNLLEGNIPVQFNNLAIL-QILDISENNLSGSMISTLNLSSVEHLYLQSNALGG 346
++ N + G IP + + + L + IS N L+G + T ++ + L N L G
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211
Query: 347 SIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
+ + L N + ++ NL L LR N + G +P L QL+ L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL 270
Query: 407 SIMDLSHNRLNGSIPA 422
+++S N L G IP
Sbjct: 271 HSLNVSFNNLCGEIPQ 286
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 181 bits (462), Expect = 6e-52
Identities = 67/254 (26%), Positives = 118/254 (46%), Gaps = 8/254 (3%)
Query: 141 LISLDISSNNFTG--KLPQNMGIVLPKLDCMNISK-NSFEGNIPSSIGKMQGLRLLDVSS 197
+ +LD+S N +P ++ LP L+ + I N+ G IP +I K+ L L ++
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110
Query: 198 NKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGL 257
+G + ++ +L L S N G + P+ +L L+ + D N SG I D
Sbjct: 111 TNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY 169
Query: 258 LRSSELM-VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDI 316
S+L + IS N L+G IP N NL + +S+N+LEG+ V F + Q + +
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 317 SENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQI 376
++N+L+ + ++ L L++N + G++P + + L +L++ N G IP Q
Sbjct: 229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QG 287
Query: 377 NEHSNLRALLLRGN 390
N
Sbjct: 288 GNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 180 bits (460), Expect = 9e-52
Identities = 62/240 (25%), Positives = 105/240 (43%), Gaps = 8/240 (3%)
Query: 193 LDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQ--IFPNYVNLTRLLFLYL-DNNHF 249
D + + G L T + + L LS N I + NL L FLY+ N+
Sbjct: 31 TDCCNRTWLGVLC-DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNL 89
Query: 250 SGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLA 309
G I + + ++L L I++ ++SG IP ++ L L S N L G +P ++L
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 310 ILQILDISENNLSGSMISTL-NLSS-VEHLYLQSNALGGSIPNTIFRGSALETLDLRDNY 367
L + N +SG++ + + S + + N L G IP T + L +DL N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 368 FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427
G N + + L N L + ++ + L+ +DL +NR+ G++P +T L
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQL 267
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 171 bits (437), Expect = 2e-48
Identities = 67/302 (22%), Positives = 106/302 (35%), Gaps = 42/302 (13%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
+ G+L + L L SLANL L
Sbjct: 34 CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLN-------------- 79
Query: 62 IENCLPTFQLKVLSLPNCNL--GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
L + N G IP + L YL ++H ++G P + L L
Sbjct: 80 -----------FLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTL 127
Query: 120 EVLYLTNNSFSG------FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
L + N+ SG L + L+ + N +G +P + G M IS+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPN----LVGITFDGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNY 233
N G IP + + L +D+S N G+ S + + + + L+ N+ +
Sbjct: 184 NRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDL-GKV 240
Query: 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293
L L L NN G + GL + L L++S N+L G IP GN + + +
Sbjct: 241 GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYA 299
Query: 294 KN 295
N
Sbjct: 300 NN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 1e-09
Identities = 24/129 (18%), Positives = 37/129 (28%), Gaps = 31/129 (24%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N L G + + + + + L N L + L L
Sbjct: 204 LSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG---KVGLSKNLNGLDLR-------- 252
Query: 61 KIENCLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
N + G +P L L L++S N L G P N +
Sbjct: 253 --NN---------------RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRF 293
Query: 120 EVLYLTNNS 128
+V NN
Sbjct: 294 DVSAYANNK 302
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 7e-54
Identities = 86/448 (19%), Positives = 146/448 (32%), Gaps = 32/448 (7%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
L+ + I +L +L+ L + N + +NL+ LE LS ++ +Q
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTNLEHLDLS--SNKIQS 163
Query: 61 KIENCLP-----TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLEN 115
L L L + I + L L L +N + N ++
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 116 NTKLEVLYLTNNSFSGF-QLTSAQHG---------LISLDISSNNFTGKLPQNMGIVLPK 165
LEV L F L + ++ ++ ++ L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 166 LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF 225
+ ++ + E S G + L++ + KF +L+ +
Sbjct: 284 VSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKF------GQFPTLKLKSLKRLTFTSN 335
Query: 226 DGQIFPNYVNLTRLLFLYLDNNH--FSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGN 283
G + V+L L FL L N F G ++ L LD+S N + + S
Sbjct: 336 KGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLG 394
Query: 284 FSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQS 341
L L + L+ F +L L LDIS + + LSS+E L +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 342 NALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQL 400
N+ + IF L LDL P N S+L+ L + N
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 514
Query: 401 CQLRKLSIMDLSHNRLNGSIPACITNLL 428
L L ++D S N + S + +
Sbjct: 515 KCLNSLQVLDYSLNHIMTSKKQELQHFP 542
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 186 bits (475), Expect = 4e-51
Identities = 87/470 (18%), Positives = 151/470 (32%), Gaps = 54/470 (11%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N L + + L+ L L + + + +LS L L + + +Q
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLST--LILTGNPIQS 90
Query: 61 KIENCL-PTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
L+ L NL + + H LK L+++HN + N T
Sbjct: 91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150
Query: 119 LEVLYLTNNSFSGF-----------------------QLTSAQHG------LISLDISSN 149
LE L L++N + Q G L L + +N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210
Query: 150 NFTGKLPQNMGIVLPKLDCMNISKNSFEGNI---PSSIGKMQGLRLLDVSSNKFAG-ELS 205
+ + + L L+ + F ++GL L + + A +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270
Query: 206 QSPVTNCF----SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSS 261
+ + F ++ L + + ++ L L N F L
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLK 328
Query: 262 ELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL--EGNIPVQFNNLAILQILDISEN 319
L + G + +L L +S+N L +G L+ LD+S N
Sbjct: 329 RL-----TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383
Query: 320 NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINE 378
+ + L L +EHL Q + L ++F L LD+ + N
Sbjct: 384 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 443
Query: 379 HSNLRALLLRGNYLQGPIPHQ-LCQLRKLSIMDLSHNRLNGSIPACITNL 427
S+L L + GN Q +LR L+ +DLS +L P +L
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 1e-50
Identities = 77/442 (17%), Positives = 149/442 (33%), Gaps = 31/442 (7%)
Query: 1 MSSNQLSGI-LPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLL 58
++ N + LP +NLT+LE+L L NK + L + L + L + + +
Sbjct: 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL-SLDLSLNPM 189
Query: 59 QVKIENCLPTFQLKVLSLPNCNL--GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116
+L L+L N V+ + L+ L + + +
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249
Query: 117 T-------KLEVLYLTNNSFSGFQLTSAQHGLIS---LDISSNNFTGKLPQNMGIVLPKL 166
+E L + + + L + + S + L
Sbjct: 250 ALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHL 309
Query: 167 DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNN--N 224
+ + F + ++ L E+ + SLE+L LS N +
Sbjct: 310 E---LVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV------DLPSLEFLDLSRNGLS 360
Query: 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM-GN 283
F G + T L +L L N + L +L LD +++L + +
Sbjct: 361 FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 419
Query: 284 FSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQS 341
NL L +S FN L+ L++L ++ N+ + + + L ++ L L
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 342 NALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLC 401
L P S+L+ L++ N FF ++L+ L N++ +L
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539
Query: 402 QL-RKLSIMDLSHNRLNGSIPA 422
L+ ++L+ N +
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEH 561
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 176 bits (448), Expect = 1e-47
Identities = 85/467 (18%), Positives = 159/467 (34%), Gaps = 30/467 (6%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF 200
+LD+S N + P+L +++S+ + + + L L ++ N
Sbjct: 30 TKNLDLSFNPLRHLGSYSFF-SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 201 AGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHF-SGKIKDGLLR 259
L+ + SL+ L N +L L L + +N S K+ +
Sbjct: 89 QS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNL----YILSMSKNLLEGNIPVQFNNLAILQILD 315
+ L LD+S+N + + + + L +S N + P F + L L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LHKLT 206
Query: 316 ISENNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIFRGSALETL------DLRDNY 367
+ N S +++ T L+ +E L F SALE L + R Y
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 368 ---FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACI 424
+ I N +N+ + L ++ ++L + + +
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKL 324
Query: 425 TNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG--TQVEVNFMT 482
+L S V + + N LS G +S T ++ ++
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN---GLSFKGCCSQSDFGTTSLKYLDLS 381
Query: 483 KNRYESYKGVI--LDYMAGLDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESF 539
N + L+ + LD + L + L+N+ L++SH + F
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441
Query: 540 SNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNDLSGPIPD 585
+ L +E L ++ N P TEL +L+ D+S L P
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT 488
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 1e-46
Identities = 95/608 (15%), Positives = 191/608 (31%), Gaps = 68/608 (11%)
Query: 10 LPSVIANL-TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPT 68
+ NL S + L L N + S + +L+V LS ++ ++
Sbjct: 19 FYKIPDNLPFSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLS-RCEIQTIEDGAYQSL 75
Query: 69 FQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN 127
L L L + + +L+ L LA + + L+ L + +N
Sbjct: 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENF-PIGHLKTLKELNVAHN 134
Query: 128 SFSGFQLTSAQHGLISL---DISSNNFTGKLPQNMGIVLPKLDCM----NISKNSFEGNI 180
F+L L +L D+SSN ++ VL ++ + ++S N
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPMNFIQ 193
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI---------FP 231
P + +++ L L + +N + + ++ + LE +L F +
Sbjct: 194 PGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 252
Query: 232 NYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291
NLT F +++ I D + + + + + L
Sbjct: 253 GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNFGWQHLE 310
Query: 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALG--GSIP 349
+ ++ +L L N S ++L S+E L L N L G
Sbjct: 311 LVNCKFGQFPTLKLKSLKRLTFTSNKGGNA----FSEVDLPSLEFLDLSRNGLSFKGCCS 366
Query: 350 NTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQ-LCQLRKLSI 408
+ F ++L+ LDL N + L L + + L+ LR L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425
Query: 409 MDLSHNRLNGSIPACITNL------------LFWKVGSRYLSGFV-MVVMDLGVADIRNY 455
+D+SH + L + + +DL
Sbjct: 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS------- 478
Query: 456 YNSTVQLSLDGIDGRSLG--TQVEVNFMTKNRYESYKGVILDYMAGL---DLSSNKLTGD 510
L+ + + + ++V M+ N + S + L D S N +
Sbjct: 479 QC-----QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 533
Query: 511 IPSEICDL-QNIHGLNLSHNFLSGSIPES--FSNLKMIESLDLSHNKLNGQIPPQLTELH 567
E+ ++ LNL+ N + + +K L + ++ P +
Sbjct: 534 KKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM- 592
Query: 568 SLSKFDVS 575
+ +++
Sbjct: 593 PVLSLNIT 600
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 173 bits (441), Expect = 2e-46
Identities = 93/429 (21%), Positives = 159/429 (37%), Gaps = 31/429 (7%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N ++ I P + L L L +N + + L+ LEV +L + +
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMK-TCIQGLAGLEVHRLVLGEFRNEG 241
Query: 61 KIENC-------LPTFQLKVLSLPNCNL--GVIPNFLLHQFNLKYLDLSHNKLAGNFPTW 111
+E L ++ L + I + N+ L +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299
Query: 112 LLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNI 171
N + L L N F F T L L +SN + + LP L+ +++
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFP-TLKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDL 354
Query: 172 SKN--SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI 229
S+N SF+G S L+ LD+S N S LE L ++N
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMS 412
Query: 230 FPNY-VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI-PSWMGNFSNL 287
+ ++L L++L + + H S L VL ++ N + P NL
Sbjct: 413 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472
Query: 288 YILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGG 346
L +S+ LE P FN+L+ LQ+L++S NN L+S++ L N +
Sbjct: 473 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 532
Query: 347 SIPNTIFR-GSALETLDLRDNYFFGRIPHQ--INEHSNLRALLLRGNYLQGPIPHQLCQL 403
S + S+L L+L N F HQ + + R LL+ ++ P
Sbjct: 533 SKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS---DK 589
Query: 404 RKLSIMDLS 412
+ + ++ L+
Sbjct: 590 QGMPVLSLN 598
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 4e-45
Identities = 84/462 (18%), Positives = 150/462 (32%), Gaps = 50/462 (10%)
Query: 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFA 201
I+ NF K+P N+ LD +S N S L++LD+S +
Sbjct: 10 ITYQCMELNFY-KIPDNLPFSTKNLD---LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65
Query: 202 GELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSS 261
+ + L L L+ N + L+ L L + + +
Sbjct: 66 TIEDGA-YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 262 ELMVLDISNNHL-SGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQI----LDI 316
L L++++N + S +P + N +NL L +S N ++ L + + LD+
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184
Query: 317 SENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQ 375
S N ++ + L L++N ++ T +G + LE L F +
Sbjct: 185 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLE 244
Query: 376 INEHSNLRAL---------LLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITN 426
+ S L L L +Y I L +S L + +
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSY 302
Query: 427 LLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRY 486
W+ + V L + + F +
Sbjct: 303 NFGWQ------------------------HLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
Query: 487 ESYKGVILDYMAGLDLSSNKLT--GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKM 544
++ V L + LDLS N L+ G ++ L+LS N + + +F L+
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQ 397
Query: 545 IESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNDLSGPIPD 585
+E LD H+ L L +L D+S+
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 2e-35
Identities = 63/343 (18%), Positives = 115/343 (33%), Gaps = 18/343 (5%)
Query: 4 NQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIE 63
+ + + LT++ +L + + F LE+
Sbjct: 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKF---------- 316
Query: 64 NCLPTFQLKVLSL--PNCNLGVIPNFLLHQFNLKYLDLSHNKLAG-NFPTWLLENNTKLE 120
PT +LK L N G + +L++LDLS N L+ + T L+
Sbjct: 317 GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLK 376
Query: 121 VLYLTNNSFSGFQLTSAQ-HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
L L+ N L LD +N ++ + L L ++IS
Sbjct: 377 YLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 436
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
+ L +L ++ N F T +L +L LS + + +L+ L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGN-FSNLYILSMSKNLLE 298
L + +N+F + L VLD S NH+ + + S+L L++++N
Sbjct: 497 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Query: 299 GNIPVQ--FNNLAILQILDISENNLSGSMISTLNLSSVEHLYL 339
Q + + L + + + S V L +
Sbjct: 557 CTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLNI 599
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 6e-35
Identities = 72/382 (18%), Positives = 126/382 (32%), Gaps = 31/382 (8%)
Query: 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL 124
C+ N IP+ L F+ K LDLS N L ++ + +L+VL L
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRH-LGSYSFFSFPELQVLDL 59
Query: 125 TNNSFSGFQLTS--AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPS 182
+ + + + L +L ++ N L L L + + +
Sbjct: 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 183 SIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL--- 239
IG ++ L+ L+V+ N +N +LE L LS+N + L ++
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 240 -LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS-WMGNFSNLYILSMSKNLL 297
L L L N + I+ G + L L + NN S ++ + + L + +
Sbjct: 179 NLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEF 237
Query: 298 EGNIPVQ------FNNLAILQI--LDISENNLSGSMISTL--NLSSVEHLYLQSNALGGS 347
++ L L I ++ + I L L++V L S +
Sbjct: 238 RNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV 297
Query: 348 IPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLS 407
+ + L+L + F Q L +G L L
Sbjct: 298 KDFSYN--FGWQHLELVNCKF-----GQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLE 350
Query: 408 IMDLSHNRLN--GSIPACITNL 427
+DLS N L+ G
Sbjct: 351 FLDLSRNGLSFKGCCSQSDFGT 372
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 8e-16
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L ++ N + +I +L+N+ L+LS L P +F++L ++ L++SHN
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPD 585
L+SL D S N +
Sbjct: 510 DTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 1e-14
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDLS +L P+ L ++ LN+SHN + L ++ LD S N +
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534
Query: 560 PPQLTEL-HSLSKFDVSYNDLSGPIP 584
+L SL+ +++ ND +
Sbjct: 535 KQELQHFPSSLAFLNLTQNDFACTCE 560
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 197 bits (502), Expect = 1e-53
Identities = 86/625 (13%), Positives = 180/625 (28%), Gaps = 120/625 (19%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
+ G +P I LT L+ L+ +
Sbjct: 331 AGFGAKGRVPDAIGQLTELKVLSFGTHSETV-------------------------SGRL 365
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+ T + + FL + L DL + + N ++ ++++
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRIS- 424
Query: 122 LYLTNNSFSGFQLTSAQHG------LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNS 175
L T ++T L + +++ FT N
Sbjct: 425 LKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA------NSDYAK 478
Query: 176 FEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG-------- 227
N S ++ L +++ + +L + + L+ L ++ N
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADW 537
Query: 228 -QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFS 285
++ + ++ Y+ N+ L+ +L +LD +N + H+ + G
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNV 595
Query: 286 NLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSG--SMISTLNLSSVEHLYLQSN 342
L L + N +E IP ++ L S N L ++ + ++ + + N
Sbjct: 596 KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYN 654
Query: 343 ALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402
+G S I + N + L N +Q
Sbjct: 655 KIG-SEGRNIS------------------CSMDDYKGINASTVTLSYNEIQKFPTELFAT 695
Query: 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQL 462
+S + LS+N + SIP + YL + +DL +N L
Sbjct: 696 GSPISTIILSNNLM-TSIPENSLKPKDGNYKNTYL----LTTIDLR-------FNKLTSL 743
Query: 463 SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIH 522
S D L Y++ +D+S N + P++ + +
Sbjct: 744 SDDFRATT-----------------------LPYLSNMDVSYNCFSS-FPTQPLNSSQLK 779
Query: 523 GLNLSH------NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 576
+ H N + P + + L + N + + +L L D++
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDEKL--TPQLYILDIAD 836
Query: 577 NDL-SGPIPDKEQFSTFDESSYRGN 600
N S + + +
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLYD 861
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 179 bits (455), Expect = 2e-47
Identities = 70/537 (13%), Positives = 151/537 (28%), Gaps = 82/537 (15%)
Query: 82 GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGL 141
L + + L L+ G P + T+L+VL +S + L
Sbjct: 313 DQPGVDLDNNGRVTGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEEL 371
Query: 142 IS--LDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF-EGNIPSSIGKMQGLRLLDVSSN 198
+ + + +L+ ++ +++ I K + L D
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431
Query: 199 KFAGELSQSP--VTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDG 256
++ + L+ + +N+ F D +
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDN-----IAVDWEDANSDYAKQYENEELS 486
Query: 257 LLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG---------NIPVQFNN 307
+L +++ N +P ++ + L L+++ N + +
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDT 546
Query: 308 LAILQILDISENNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365
+QI + NNL S + + L N + L L L
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDY 604
Query: 366 NYFFGRIPHQINEH-SNLRALLLRGNYLQG-PIPHQLCQLRKLSIMDLSHNRLNGSIPAC 423
N IP + L N L+ P + + +D S+N++
Sbjct: 605 NQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI 663
Query: 424 ITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTK 483
++ +K + + L YN + T
Sbjct: 664 SCSMDDYKGIN-------ASTVTLS-------YNE-----IQKFPTELFAT--------- 695
Query: 484 NRYESYKGVILDYMAGLDLSSNKLT-------GDIPSEICDLQNIHGLNLSHNFLSGSIP 536
++ + LS+N +T + + ++L N L+ S+
Sbjct: 696 ----------GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLS 744
Query: 537 ES--FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY------NDLSGPIPD 585
+ + L + ++D+S+N + P Q L F + + N + P
Sbjct: 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPT 800
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 173 bits (440), Expect = 2e-45
Identities = 60/463 (12%), Positives = 138/463 (29%), Gaps = 47/463 (10%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFS--FCSLANLSKLEVFQLSMEA--D 56
++ + + + ++ + L+ ++ Q ++ +
Sbjct: 354 FGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPE 413
Query: 57 LLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116
+ +K ++ + ++ +L N + I + L+ + +++ + E+
Sbjct: 414 MKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
N S L L +++ + +LP + LP+L +NI+ N
Sbjct: 473 NSDYAKQYENEELSWSNLKD----LTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRG 527
Query: 177 EG---------NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG 227
+ +++ + N + + + L L +N
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-- 585
Query: 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSW--MGNFS 285
+ + +L L LD N +D + ++ L S+N L IP+ +
Sbjct: 586 RHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVY 644
Query: 286 NLYILSMSKNLLEGNIPVQFNNLAI-----LQILDISENNLSGSMISTL-NLSSVEHLYL 339
+ + S N + ++ + +S N + S + + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 340 QSNALG-------GSIPNTIFRGSALETLDLRDNYFFGRIPHQI--NEHSNLRALLLRGN 390
+N + L T+DLR N + L + + N
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTLPYLSNMDVSYN 763
Query: 391 YLQGPIPHQLCQLRKLSIMDLSH------NRLNGSIPACITNL 427
P Q +L + H NR+ P IT
Sbjct: 764 CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 7e-45
Identities = 59/431 (13%), Positives = 128/431 (29%), Gaps = 56/431 (12%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
+ +NL L + LY+ +L L +L +L+ ++
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD--FLYDLPELQSLNIA--------- 523
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
N + + + + + ++ + +N L + L+ KL +
Sbjct: 524 -CN-----RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGL 577
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
L +N + L L + N +P++ +++ + S N + IP
Sbjct: 578 LDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKY-IP 635
Query: 182 S--SIGKMQGLRLLDVSSNKFAGE----LSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN 235
+ + + + +D S NK E + + LS N +
Sbjct: 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFAT 695
Query: 236 LTRLLFLYLDNNHFS-------GKIKDGLLRSSELMVLDISNNHLSGHIPS--WMGNFSN 286
+ + + L NN + + L +D+ N L+ +
Sbjct: 696 GSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPY 754
Query: 287 LYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGG 346
L + +S N P Q N + L+ I + N +
Sbjct: 755 LSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQ-----------------RDAEGNRILR 796
Query: 347 SIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
P I +L L + N ++ ++ L L + N +C +
Sbjct: 797 QWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEA 853
Query: 407 SIMDLSHNRLN 417
+ L +++
Sbjct: 854 GMYVLLYDKTQ 864
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 6e-27
Identities = 48/401 (11%), Positives = 112/401 (27%), Gaps = 68/401 (16%)
Query: 218 LQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277
L N + N ++ F + + + + L + + L ++ G +
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWNFN-KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339
Query: 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS-------GSMISTLN 330
P +G + L +LS + + + + + + ++ + LN
Sbjct: 340 PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLN 399
Query: 331 LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
LS + + N I + N I I + L+ + +
Sbjct: 400 LSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN-RITFISKAIQRLTKLQIIYFANS 458
Query: 391 YLQGP-------------------IPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWK 431
L+ L+ ++L + +P + +L
Sbjct: 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPE-- 516
Query: 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKG 491
+ +++ N + + D L + + K +
Sbjct: 517 ----------LQSLNI-------ACNRGISAAQLKADWTRLAD--DEDTGPKIQI----- 552
Query: 492 VILDYMAGLDLSSNKLTG-DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 550
+ N L + + + + L+ HN + E+F + L L
Sbjct: 553 --------FYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKL 602
Query: 551 SHNKLNGQIPPQL-TELHSLSKFDVSYNDLSGPIPDKEQFS 590
+N++ +IP + S+N L IP+
Sbjct: 603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAK 641
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 91.9 bits (228), Expect = 2e-19
Identities = 32/249 (12%), Positives = 80/249 (32%), Gaps = 33/249 (13%)
Query: 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACIT 425
+ + + ++ + + L L G +G +P + QL +L ++ + S
Sbjct: 309 DMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGD 368
Query: 426 NLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNR 485
L + M + + + + L D I+ ++ + +
Sbjct: 369 EELTPDMSEERKHRIRMHYKKMFLDYDQR--LNLSDLLQDAINRNPEMKPIKKDSRISLK 426
Query: 486 YESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSG------------ 533
+ +N++T I I L + + +++ +
Sbjct: 427 DTQ-----------IGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474
Query: 534 -------SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586
+ S+SNLK + ++L + Q+P L +L L +++ N K
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534
Query: 587 EQFSTFDES 595
++ +
Sbjct: 535 ADWTRLADD 543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 14/126 (11%), Positives = 37/126 (29%), Gaps = 8/126 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ + ++ + + GL+L+ G +P++ L ++ L +
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363
Query: 560 PPQLTELHSLSKFDVS-------YNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 612
E + + Y + + S + + N + P S
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM-KPIKKDSR 422
Query: 613 TNLLEL 618
+L +
Sbjct: 423 ISLKDT 428
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 4e-48
Identities = 101/537 (18%), Positives = 180/537 (33%), Gaps = 62/537 (11%)
Query: 63 ENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVL 122
+ C+ K + N L IP L + + + L+ S N L L L
Sbjct: 6 QKCIEKEVNKTYNCENLGLNEIPGTLPN--STECLEFSFNVLP-TIQNTTFSRLINLTFL 62
Query: 123 YLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPS 182
LT I + F +LD + ++ N +
Sbjct: 63 DLTRCQIYW--------------IHEDTFQS---------QHRLDTLVLTANPLIFMAET 99
Query: 183 SIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242
++ + L+ L + + P+ N +LE L L +N+ P +L L
Sbjct: 100 ALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158
Query: 243 YLDNNHFSGKIKDGL--LRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
NN K+ + L+ + + L+++ N ++ I + + L+
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLV 217
Query: 301 IPVQFNNLAI--LQILDISENNL---SGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG 355
I N I L + + + S ++ L SVE + LQ + NT
Sbjct: 218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCF 277
Query: 356 SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNR 415
S L+ LDL + +P + S L+ L+L N + L+ + + N
Sbjct: 278 SGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNT 336
Query: 416 LNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQ 475
+ + + + +DL ++ + R+L +
Sbjct: 337 KRLELGTGC----LENLEN-------LRELDLS-------HDDIETSDCCNLQLRNL-SH 377
Query: 476 VEVNFMTKNRYESYKGVILDYMAGL---DLSSNKLTG-DIPSEICDLQNIHGLNLSHNFL 531
++ ++ N S K L DL+ +L D S +L + LNLSH+ L
Sbjct: 378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL 437
Query: 532 SGSIPESFSNLKMIESLDLSHNKL---NGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
S + F L ++ L+L N N Q L L L +S+ DLS
Sbjct: 438 DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 176 bits (449), Expect = 1e-47
Identities = 111/575 (19%), Positives = 193/575 (33%), Gaps = 71/575 (12%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLLQ 59
S N L I + + L +L +L L + +F S L
Sbjct: 40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRL---------------- 83
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTK 118
L L L + L LK+L ++ L N
Sbjct: 84 ------------DTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI-PLHNQKT 130
Query: 119 LEVLYLTNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCM--NISKN 174
LE LYL +N S +L L LD +N L + L + + N++ N
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY-LSKEDMSSLQQATNLSLNLNGN 189
Query: 175 SFEGNIPSSIGKMQGLRLLDVSSNKFAGE-LSQSPVTNCFSLEWLQLSNNN---FDGQIF 230
G I + L+ + + SL + + +F
Sbjct: 190 DIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVF 248
Query: 231 PNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290
++ + + L ++F + S L LD++ HLS +PS + S L L
Sbjct: 249 EGLCEMS-VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL 306
Query: 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQSNALGGS- 347
+S N E + +N L L I N + + NL ++ L L + + S
Sbjct: 307 VLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366
Query: 348 IPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG-PIPHQLCQLRK 405
N R S L++L+L N E L L L L+ L
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426
Query: 406 LSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLD 465
L +++LSH+ L+ + LF + + + ++L N + ++
Sbjct: 427 LKVLNLSHSLLDI-----SSEQLFDGLPA-------LQHLNLQ-------GNHFPKGNIQ 467
Query: 466 GIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGL---DLSSNKLTGDIPSEICDLQNIH 522
+ ++E+ ++ S + + DLS N+LT + L+ I+
Sbjct: 468 KTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY 527
Query: 523 GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557
LNL+ N +S +P L +++L N L+
Sbjct: 528 -LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 4e-47
Identities = 81/432 (18%), Positives = 150/432 (34%), Gaps = 18/432 (4%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ SN +S I L+ L +N S +++L + L++ + +
Sbjct: 136 LGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY--LSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIP---NFLLHQFNLKYLDLSHNKLAGNFPTWLLEN-N 116
+ + L+ ++ +L P
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE 253
Query: 117 TKLEVLYLTNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN 174
+E + L + F + GL LD+++ + + +LP + L L + +S N
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLV-GLSTLKKLVLSAN 311
Query: 175 SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV 234
FE S L L + N EL + N +L L LS+++ + N
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371
Query: 235 --NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP-SWMGNFSNLYILS 291
NL+ L L L N + +L +LD++ L S N L +L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL----NLSSVEHLYLQSNALGGS 347
+S +LL+ + F+ L LQ L++ N+ I L +E L L L
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491
Query: 348 IPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLS 407
+ + +DL N ++ + L L N++ +P L L +
Sbjct: 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQR 550
Query: 408 IMDLSHNRLNGS 419
++L N L+ +
Sbjct: 551 TINLRQNPLDCT 562
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-36
Identities = 65/383 (16%), Positives = 116/383 (30%), Gaps = 49/383 (12%)
Query: 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHL 273
S E L+ S N + L L FL L +D L L ++ N L
Sbjct: 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93
Query: 274 SGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLS 332
+ + L L + + + +N L+ L + N++S +
Sbjct: 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153
Query: 333 SVEHLYLQSNALGGSIPNTI--FRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
++ L Q+NA+ + + + +L+L N I + + ++L G
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPGAFDSAVFQSLNFGGT 212
Query: 391 YLQGPIPHQL--CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLG 448
I L ++ L + PA L V S L
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK--------- 263
Query: 449 VADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT 508
I + + LDL++ L+
Sbjct: 264 -------------HYFFNISSNTFHC-------------------FSGLQELDLTATHLS 291
Query: 509 GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELH 567
++PS + L + L LS N S SN + L + N ++ L L
Sbjct: 292 -ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 568 SLSKFDVSYNDLSGPIPDKEQFS 590
+L + D+S++D+ Q
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLR 373
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 3e-11
Identities = 17/121 (14%), Positives = 44/121 (36%), Gaps = 2/121 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L ++ + + + + L L N +S + ++ LD +N ++
Sbjct: 110 LFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169
Query: 560 PPQLTELHSLS--KFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLE 617
++ L + +++ ND++G P + F ++ G +L + +
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229
Query: 618 L 618
L
Sbjct: 230 L 230
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-10
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L LS L+ L+ ++ ++LSHN L+ S E+ S+LK I L+L+ N ++ +
Sbjct: 481 LVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIIL 539
Query: 560 PPQLTELHSLSKFDVSYNDLSG 581
P L L ++ N L
Sbjct: 540 PSLLPILSQQRTINLRQNPLDC 561
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 4e-10
Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 500 LDLSSNKLTGDI---PSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556
L+L N + + L + L LS LS +F++LKM+ +DLSHN+L
Sbjct: 454 LNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513
Query: 557 GQIPPQLTELHSLSKFDVSYNDLSGPIPD 585
L+ L + +++ N +S +P
Sbjct: 514 SSSIEALSHLKGI-YLNLASNHISIILPS 541
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 5e-48
Identities = 88/448 (19%), Positives = 140/448 (31%), Gaps = 35/448 (7%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLS------ME 54
+L+ + I L +L+ L + N +NL+ L LS +
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLTNLVHVDLSYNYIQTIT 169
Query: 55 ADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLE 114
+ LQ EN L + + I + L L L N + N L+
Sbjct: 170 VNDLQFLREN---PQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226
Query: 115 NNTKLEVLYLTNNSFSGFQLTSA----------QHGLISLDISSNNFTGKLPQNMGIVLP 164
N L V L F + + ++ N L
Sbjct: 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFH-CLA 285
Query: 165 KLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224
+ M+++ S + K + L + + L Q P + L+ L L+ N
Sbjct: 286 NVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQ----LKQFPTLDLPFLKSLTLTMNK 339
Query: 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMG 282
I V L L +L L N S L ++ L LD+S N + +
Sbjct: 340 GS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM 396
Query: 283 NFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQ 340
L L + L+ F +L L LDIS N L+S+ L +
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456
Query: 341 SNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQ 399
N+ + + +F + L LDL + L+ L + N L
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516
Query: 400 LCQLRKLSIMDLSHNRLNGSIPACITNL 427
QL LS +D S NR+ S
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFP 544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 6e-45
Identities = 95/550 (17%), Positives = 195/550 (35%), Gaps = 40/550 (7%)
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+ C+ + L +P+ + + K +DLS N L ++ N ++L+
Sbjct: 4 LNPCIEVVPNITYQCMDQKLSKVPDDIPS--STKNIDLSFNPLKI-LKSYSFSNFSELQW 60
Query: 122 LYLTNNSFSGFQLTS--AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
L L+ + + H L +L ++ N L L+ + +
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSLENLVAVETKLASL 119
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG---QIFPNYVNL 236
IG++ L+ L+V+ N + +N +L + LS N
Sbjct: 120 ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179
Query: 237 TRLLF-LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSW-MGNFSNLYILSMSK 294
++ L + N I+D + +L L + N S +I + N + L++ +
Sbjct: 180 PQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238
Query: 295 NLLEGNIPVQFNNLAILQILD---ISENNLSGSMISTL------NLSSVEHLYLQSNALG 345
+ ++ +I++ L I E L+ + + L++V + L ++
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI- 297
Query: 346 GSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRK 405
+ + ++L + + P + L++L L N +G I + L
Sbjct: 298 -KYLEDVPKHFKWQSLSIIRCQL-KQFPT--LDLPFLKSLTLTMN--KGSISFKKVALPS 351
Query: 406 LSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLS-- 463
LS +DLS N L+ S ++L + LS ++M + +
Sbjct: 352 LSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEEL--QHLDFQHS 409
Query: 464 -LDGIDGRSLG---TQVEVNFMTKNRYESYKGVILDYMAG---LDLSSNKLTGDIPSEI- 515
L + S ++ ++ + I + L ++ N + S +
Sbjct: 410 TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF 469
Query: 516 CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS 575
+ N+ L+LS L F L ++ L++SHN L +L+SLS D S
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529
Query: 576 YNDLSGPIPD 585
+N +
Sbjct: 530 FNRIETSKGI 539
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 159 bits (403), Expect = 2e-41
Identities = 81/448 (18%), Positives = 138/448 (30%), Gaps = 35/448 (7%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
++ N + P + LTSLE L + K + L L+ ++ +
Sbjct: 87 LTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQLITLKKLNVA-HNFIHSC 143
Query: 61 KIENCLPTF-QLKVLSLPNCNLGVIPNFLLH-----QFNLKYLDLSHNKLAGNFPTWLLE 114
K+ L + L + I L LD+S N +
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF-- 201
Query: 115 NNTKLEVLYLTNNSFSGFQLTSAQHGLISLDI--------SSNNFTGKLPQNMGIVLPKL 166
KL L L N S + + L L + ++ L +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261
Query: 167 --DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224
D ++ + + + + + ++ V F + L +
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK---YLEDVPKHFKWQSLSIIRCQ 318
Query: 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS--GHIPSWMG 282
++L L L L N S K L S L LD+S N LS G
Sbjct: 319 LKQFPT---LDLPFLKSLTLTMNKGSISFKKVALPS--LSYLDLSRNALSFSGCCSYSDL 373
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG--SMISTLNLSSVEHLYLQ 340
++L L +S N + F L LQ LD + L + L+L + +L +
Sbjct: 374 GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432
Query: 341 SNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQI-NEHSNLRALLLRGNYLQGPIPHQ 399
++L TL + N F + +NL L L L+
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492
Query: 400 LCQLRKLSIMDLSHNRLNGSIPACITNL 427
L +L ++++SHN L + L
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQL 520
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 2e-40
Identities = 77/451 (17%), Positives = 146/451 (32%), Gaps = 40/451 (8%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQ---LSMEAD 56
+S N L + +N + L++L L + + ++ L +LS L + S
Sbjct: 39 LSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG 98
Query: 57 LLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLEN 115
L+ L L + +F + Q LK L+++HN + N
Sbjct: 99 SFS-------GLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSN 151
Query: 116 NTKLEVLYLTNNSFSGFQ------LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCM 169
T L + L+ N L +SLD+S N + KL +
Sbjct: 152 LTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF-QGIKLHEL 209
Query: 170 NISKNSFEGNIPS-SIGKMQGLRLLDVSSNKFAGELSQSPVTNCF-------SLEWLQLS 221
+ N NI + + GL + + +F E + +++ +L+
Sbjct: 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269
Query: 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM 281
N + L + + L + + + + L I L P+
Sbjct: 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPT-- 324
Query: 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST---LNLSSVEHLY 338
+ L L+++ N +I + L L LD+S N LS S + L +S+ HL
Sbjct: 325 LDLPFLKSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382
Query: 339 LQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQ-INEHSNLRALLLRGNYLQGPIP 397
L N + L+ LD + + L L + +
Sbjct: 383 LSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441
Query: 398 HQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428
L L+ + ++ N + + +
Sbjct: 442 GIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 140 bits (355), Expect = 3e-35
Identities = 67/327 (20%), Positives = 116/327 (35%), Gaps = 17/327 (5%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
L PS++ L + L+ + L+ +
Sbjct: 243 DERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA---GVSIKY 299
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+E+ F+ + LS+ C L P L LK L L+ NK + +F L + L
Sbjct: 300 LEDVPKHFKWQSLSIIRCQLKQFPTLDLP--FLKSLTLTMNKGSISFKKVALPS---LSY 354
Query: 122 LYLTNNSFSGFQLTSAQHG----LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
L L+ N+ S S L LD+S N MG L +L ++ ++ +
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLK 412
Query: 178 GNIP-SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV-N 235
S+ ++ L LD+S SL L+++ N+F N N
Sbjct: 413 RVTEFSAFLSLEKLLYLDISYTNTKI-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFAN 471
Query: 236 LTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
T L FL L L +L++S+N+L S +L L S N
Sbjct: 472 TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN 531
Query: 296 LLEGNIPVQFNNLAILQILDISENNLS 322
+E + + + L +++ N+++
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 24/91 (26%), Positives = 39/91 (42%), Gaps = 1/91 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDLS ++ L ++ L L+ N + P SFS L +E+L KL
Sbjct: 61 LDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLE 120
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590
+ +L +L K +V++N + FS
Sbjct: 121 SFPIGQLITLKKLNVAHNFIHS-CKLPAYFS 150
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 9e-12
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDLS +L L + LN+SHN L ++ L + +LD S N++
Sbjct: 478 LDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSK 537
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
SL+ F+++ N ++
Sbjct: 538 GILQHFPKSLAFFNLTNNSVA 558
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-06
Identities = 27/126 (21%), Positives = 49/126 (38%), Gaps = 10/126 (7%)
Query: 1 MSSNQLSGILPS-VIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQ 59
M+ N S V AN T+L +L L + + S+ L +L++ +S +LL
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ--ISWGVFDTLHRLQLLNMS-HNNLLF 511
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKL-----AGNFPTWLL 113
+ + + L L + L H +L + +L++N + F W+
Sbjct: 512 LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQWVK 571
Query: 114 ENNTKL 119
E L
Sbjct: 572 EQKQFL 577
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 6e-42
Identities = 141/693 (20%), Positives = 246/693 (35%), Gaps = 92/693 (13%)
Query: 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTF 69
L V L + E L L N + + S L +L++ +L + L + E
Sbjct: 16 LTQVPQVLNTTERLLLSFNYIRT--VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLP 73
Query: 70 QLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNF-PTWLLENNTKLEVLYLTNN 127
L++L L + + + + F+L L L L+ N L L L+ N
Sbjct: 74 NLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN 133
Query: 128 SFSGFQLTSAQHGLISL---DISSNNFTGKLPQNM-GIVLPKLDCMNISKNSFEGNIPSS 183
L + L SL D SSN + + L +++ NS +
Sbjct: 134 QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVD 193
Query: 184 IGKMQG------LRLLDVSSNK--------FAGELSQSPVTNCF---SLEWLQLSNNN-- 224
GK L +LDVS N F+ +S+S + + +N
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253
Query: 225 -FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMG 282
D F + + L L + + + + +L VL+++ N ++
Sbjct: 254 DPDQNTFAGLARSS-VRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQS 341
NL +L++S NLL F L + +D+ +N+++ T L ++ L L+
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371
Query: 342 NALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG-PIPHQL 400
NAL TI ++ + L N +P + + L N L+ I + L
Sbjct: 372 NAL-----TTIHFIPSIPDIFLSGNK-LVTLP---KINLTANLIHLSENRLENLDILYFL 422
Query: 401 CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTV 460
++ L I+ L+ NR + + S
Sbjct: 423 LRVPHLQILILNQNRFSSCSGDQTPSEN----------------------------PSLE 454
Query: 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN 520
QL L +++ + T+ ++ ++G L ++ L L+ N L P L
Sbjct: 455 QLFLG-------ENMLQLAWETELCWDVFEG--LSHLQVLYLNHNYLNSLPPGVFSHLTA 505
Query: 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+ GL+L+ N L+ +E LD+S N+L P + SLS D+++N
Sbjct: 506 LRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLL-APNPDV--FVSLSVLDITHNKFI 560
Query: 581 GPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETS----SKGAEDESAVDMVA 636
+ STF N+ + GPP + C S S DE V
Sbjct: 561 CEC----ELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLKSL 616
Query: 637 FYWSFVASCVTVMLGLLAILWVNPYWRRLWFYF 669
+ F+ VT+ L L+ IL V + + +
Sbjct: 617 KFSLFIVCTVTLTLFLMTILTVTKFRGFCFICY 649
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 2e-27
Identities = 67/374 (17%), Positives = 126/374 (33%), Gaps = 46/374 (12%)
Query: 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS 279
N Q+ L L L N+ +L +L++ + + I
Sbjct: 11 YRFCNLT-QVPQV---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDK 66
Query: 280 WM-GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL---NLSSVE 335
N NL IL + + + P F L L L + LS +++ NL ++
Sbjct: 67 EAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126
Query: 336 HLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQIN--EHSNLRALLLRGNYL 392
L L N + + F ++L+++D N F H++ + L L N L
Sbjct: 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSL 186
Query: 393 QGPIPHQLCQLRK------LSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMD 446
+ + L I+D+S N I +N +
Sbjct: 187 YSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI------------------ 228
Query: 447 LGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNK 506
S Q + +G + + ++ G+ + LDLS
Sbjct: 229 -----------SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF 277
Query: 507 LTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 566
+ L+++ LNL++N ++ E+F L ++ L+LS+N L L
Sbjct: 278 VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337
Query: 567 HSLSKFDVSYNDLS 580
++ D+ N ++
Sbjct: 338 PKVAYIDLQKNHIA 351
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 1e-38
Identities = 87/442 (19%), Positives = 149/442 (33%), Gaps = 34/442 (7%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
L+ + I +L +L+ L + N + +NL+ LE L + ++ +Q
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEH--LDLSSNKIQS 163
Query: 61 KIENCLP-----TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLEN 115
L L L + I + L L L +N + N ++
Sbjct: 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQG 223
Query: 116 NTKLEVLYLTNNSFSGF-QLTSAQHG---------LISLDISSNNFTGKLPQNMGIVLPK 165
LEV L F L + ++ ++ ++ L
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 166 LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF 225
+ ++ + G + L++ + K Q P SL+ L ++N
Sbjct: 284 VSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCK----FGQFPTLKLKSLKRLTFTSNK- 336
Query: 226 DGQIFPNYVNLTRLLFLYLDNN--HFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGN 283
G + V+L L FL L N F G ++ L LD+S N + + S
Sbjct: 337 -GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLG 394
Query: 284 FSNLYILSMSKNLLEGNIPV-QFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQS 341
L L + L+ F +L L LDIS + + LSS+E L +
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 454
Query: 342 NALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQI-NEHSNLRALLLRGNYLQGPIPHQ 399
N+ + IF L LDL ++ N S+L+ L + N L+
Sbjct: 455 NSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGI 513
Query: 400 LCQLRKLSIMDLSHNRLNGSIP 421
+L L + L N + S P
Sbjct: 514 FDRLTSLQKIWLHTNPWDCSCP 535
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 134 bits (339), Expect = 2e-33
Identities = 83/464 (17%), Positives = 147/464 (31%), Gaps = 53/464 (11%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N L + + L+ L L + + + +LS L L+ + +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILT-GNPIQSL 91
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ L+ L NL + NF + LK L+++HN + N T L
Sbjct: 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151
Query: 120 EVLYLTNNSFSGF-----------------------QLTSAQHG------LISLDISSNN 150
E L L++N + Q G L L + +N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211
Query: 151 FTGKLPQNMGIVLPKLDCMNISKNSFEGN---IPSSIGKMQGLR-----LLDVSSNKFAG 202
+ + + L L+ + F ++GL ++ +
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271
Query: 203 ELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSE 262
+ ++ L + + ++ L L N F L
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLKL---KS 326
Query: 263 LMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE--GNIPVQFNNLAILQILDISENN 320
L L ++N + +L L +S+N L G L+ LD+S N
Sbjct: 327 LKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 321 LSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH 379
+ + L L +EHL Q + L ++F L LD+ + N
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 380 SNLRALLLRGNYLQGPIPHQ-LCQLRKLSIMDLSHNRLNGSIPA 422
S+L L + GN Q +LR L+ +DLS +L +
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSP 487
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 2e-31
Identities = 83/396 (20%), Positives = 142/396 (35%), Gaps = 25/396 (6%)
Query: 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHL 273
S + L LS N ++ + L L L S L L ++ N +
Sbjct: 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88
Query: 274 SGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL--NL 331
S+L L + L +L L+ L+++ N + + NL
Sbjct: 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 332 SSVEHLYLQSNALGGSIPNTIFRG-----SALETLDLRDNYFFGRIPHQINEHSNLRALL 386
+++EHL L SN + SI T R +LDL N I + L L
Sbjct: 149 TNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLT 206
Query: 387 LRGNYLQGPIPHQLCQ-LRKLSIMDLSHNRLNG---------SIPACITNLLFWKVGSRY 436
LR N+ + Q L L + L S + NL + Y
Sbjct: 207 LRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266
Query: 437 LSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDY 496
L ++ ++DL S V ++++ + S + + ++ + + L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326
Query: 497 MAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS--GSIPESFSNLKMIESLDLSHNK 554
+ L +SNK + SE+ DL ++ L+LS N LS G +S ++ LDLS N
Sbjct: 327 LKRLTFTSNKGG-NAFSEV-DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384
Query: 555 LNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590
+ + L L D +++L + + F
Sbjct: 385 VI-TMSSNFLGLEQLEHLDFQHSNLKQ-MSEFSVFL 418
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 2e-29
Identities = 92/528 (17%), Positives = 167/528 (31%), Gaps = 59/528 (11%)
Query: 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL 124
C+ N IP+ L + K LDLS N L + ++ + +L+VL L
Sbjct: 3 CVEVVPNITYQCMELNFYKIPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFPELQVLDL 59
Query: 125 TNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPS 182
+ + + Q L +L ++ N L L L + + +
Sbjct: 60 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENF 118
Query: 183 SIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG---QIFPNYVNLTRL 239
IG ++ L+ L+V+ N +N +LE L LS+N + L
Sbjct: 119 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 240 LF-LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298
L L N + I+ G + L L + NN S ++ L L + + +L
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK--TCIQGLAGLEVHRLVLG 235
Query: 299 GNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SA 357
+ ++ L G L ++E L +F +
Sbjct: 236 -------EFRNEGNLEKFDKSALEG-----LCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
+ + L + + + L L +L L++L + N+
Sbjct: 284 VSSFSLVSVTI--ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRL---TFTSNKGG 338
Query: 418 GSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQV 476
+ + +L +DL N T +
Sbjct: 339 NAFSEVDLPSLE---------------FLDL-------SRNGLSFKGCCSQSDFGT-TSL 375
Query: 477 EVNFMTKNRYESYKGVILDYMA--GLDLSSNKLTG-DIPSEICDLQNIHGLNLSHNFLSG 533
+ ++ N + L LD + L S L+N+ L++SH
Sbjct: 376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV 435
Query: 534 SIPESFSNLKMIESLDLSHNKLNGQIPPQ-LTELHSLSKFDVSYNDLS 580
+ F+ L +E L ++ N P TEL +L+ D+S L
Sbjct: 436 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 3e-27
Identities = 82/368 (22%), Positives = 139/368 (37%), Gaps = 27/368 (7%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N ++ I P + L L L +N + C + L+ LEV +L + +
Sbjct: 184 LSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTC-IQGLAGLEVHRLVLGEFRNEG 241
Query: 61 KIE-------NCLPTFQLKVLSL--PNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTW 111
+E L ++ L + L I + N+ L +
Sbjct: 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-- 299
Query: 112 LLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNI 171
N + L L N F F + L L +SN + LP L+ +++
Sbjct: 300 -FSYNFGWQHLELVNCKFGQFPTLKLKS-LKRLTFTSNKGGNAFS---EVDLPSLEFLDL 354
Query: 172 SKN--SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI 229
S+N SF+G S L+ LD+S N S LE L ++N Q+
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV--ITMSSNFLGLEQLEHLDFQHSNLK-QM 411
Query: 230 FPNYV--NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM-GNFSN 286
V +L L++L + + H S L VL ++ N + + N
Sbjct: 412 SEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 471
Query: 287 LYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALG 345
L L +S+ LE P FN+L+ LQ+L+++ N L L+S++ ++L +N
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531
Query: 346 GSIPNTIF 353
S P +
Sbjct: 532 CSCPRIDY 539
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 4e-09
Identities = 22/94 (23%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L ++ N + +I +L+N+ L+LS L P +F++L ++ L+++ N+L
Sbjct: 450 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592
L SL K + N P + S +
Sbjct: 510 PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 543
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 1e-33
Identities = 80/498 (16%), Positives = 171/498 (34%), Gaps = 49/498 (9%)
Query: 70 QLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNS 128
L+VL L + + I + +L++LDLS N L+ + + + L+ L L N
Sbjct: 51 NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNP 109
Query: 129 FSGFQLTSAQHGLISL---DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG 185
+ +TS L +L I + ++ + L L+ + I S S+
Sbjct: 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169
Query: 186 KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245
++ + L + ++ A L + S+ +L+L + N F +
Sbjct: 170 SIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228
Query: 246 NNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305
+L L ++ + + + + + + +
Sbjct: 229 AFR------GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282
Query: 306 NNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDL 363
++ L I + L + + L V+ + ++++ + +P + + +LE LDL
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDL 341
Query: 364 RDNYFFGRIPHQ---INEHSNLRALLLRGNYLQ--GPIPHQLCQLRKLSIMDLSHNRLNG 418
+N +L+ L+L N+L+ L L+ L+ +D+S N +
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH- 400
Query: 419 SIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEV 478
+P M ++L + + +EV
Sbjct: 401 PMPDSCQWPEK------------MRFLNLS-------STGIRVVK------TCIPQTLEV 435
Query: 479 NFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPES 538
++ N +S + L + L +S NKL +P + + +S N L
Sbjct: 436 LDVSNNNLDS-FSLFLPRLQELYISRNKLK-TLPDASL-FPVLLVMKISRNQLKSVPDGI 492
Query: 539 FSNLKMIESLDLSHNKLN 556
F L ++ + L N +
Sbjct: 493 FDRLTSLQKIWLHTNPWD 510
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 1e-32
Identities = 74/424 (17%), Positives = 147/424 (34%), Gaps = 25/424 (5%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N LS + S L+SL+YL L N ++ L NL+ L+ ++ ++
Sbjct: 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPNLTNLQTLRIGNVETFSEI 139
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ + L L + +L + L ++ +L L ++ A + + +
Sbjct: 140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSV 198
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
L L + + + FQ + +S + F + + + +
Sbjct: 199 RYLELRDTNLARFQFSPLPVDEVSSPMKKLAF-----RGSVLTDESFNELLKLLRYILEL 253
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
L D + ++ +S+ ++ L + + Y L ++
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDV-VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312
Query: 240 LFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLS---GHIPSWMGNFSNLYILSMSKN 295
+ ++N+ + + L LD+S N + + G + +L L +S+N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371
Query: 296 LLE--GNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF 353
L L L LDIS N S + L L S + + I
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCIP 430
Query: 354 RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
+ LE LD+ +N + L+ L + N L+ +P L +M +S
Sbjct: 431 QT--LEVLDVSNNN-LDSFSLFL---PRLQELYISRNKLKT-LPDAS-LFPVLLVMKISR 482
Query: 414 NRLN 417
N+L
Sbjct: 483 NQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 2e-31
Identities = 69/438 (15%), Positives = 143/438 (32%), Gaps = 52/438 (11%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ S++++ I +L SLE+L L DN S+ +
Sbjct: 57 LKSSRINTIEGDAFYSLGSLEHLDLSDNHLS--------------------SLSSSWFG- 95
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPN--FLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
P LK L+L + + NL+ L + + + T
Sbjct: 96 ------PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTS 149
Query: 119 LEVLYLTNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
L L + S +Q S + + L + + L + +L + + + +
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNL 208
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNL 236
S + + + + + L+ L L + + +
Sbjct: 209 ARFQFSPLPVDEVSSPMKKLAFRG-SVLTDESFNELLKLLRYILELSEV------EFDDC 261
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
T + + + G + + + L I +L + + + +++ +
Sbjct: 262 TLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTL----NLSSVEHLYLQSNALGGSIPNT- 351
+ +L L+ LD+SEN + + S++ L L N L S+ T
Sbjct: 322 VFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTG 380
Query: 352 -IFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409
I L +LD+ N F +P +R L L ++ + C + L ++
Sbjct: 381 EILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRV-VKT--CIPQTLEVL 436
Query: 410 DLSHNRLNGSIPACITNL 427
D+S+N L+ S + L
Sbjct: 437 DVSNNNLD-SFSLFLPRL 453
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 4e-30
Identities = 60/376 (15%), Positives = 128/376 (34%), Gaps = 10/376 (2%)
Query: 211 NCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISN 270
+C + + +F I + L L N + L + L VL + +
Sbjct: 3 SCDASGVCDGRSRSFT-SIPSG--LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKS 59
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL- 329
+ ++ + +L L +S N L F L+ L+ L++ N +++L
Sbjct: 60 SRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLF 119
Query: 330 -NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLL 387
NL++++ L + + I F G ++L L+++ + ++ L L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179
Query: 388 RGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDL 447
+ + L + ++L L + + L+ V+ D
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDE 238
Query: 448 GVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKL 507
++ ++LS D +L + N + V + L + L
Sbjct: 239 SFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298
Query: 508 TGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ---LT 564
D+ + L+ + + + ++ + +LK +E LDLS N + +
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358
Query: 565 ELHSLSKFDVSYNDLS 580
SL +S N L
Sbjct: 359 AWPSLQTLVLSQNHLR 374
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 2e-28
Identities = 91/536 (16%), Positives = 171/536 (31%), Gaps = 80/536 (14%)
Query: 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
V + + IP+ L +K LDLS NK+ L L+VL L ++
Sbjct: 6 ASGVCDGRSRSFTSIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRI 62
Query: 130 SGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKM 187
+ + + L LD+S N+ + ++S + F +
Sbjct: 63 NTIEGDAFYSLGSLEHLDLSDNHLS-----------------SLSSSWFGP--------L 97
Query: 188 QGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNY-VNLTRLLFLYLDN 246
L+ L++ N + S N +L+ L++ N +I LT L L +
Sbjct: 98 SSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA 157
Query: 247 NHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305
+ L+S ++ L + + + + + S++ L + L
Sbjct: 158 LSLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216
Query: 306 N-----------NLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTI-- 352
+ D S N L + L LS VE N LG P+
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDV 276
Query: 353 ------FRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
+ L + Y F + + ++ + + + + L+ L
Sbjct: 277 VSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSL 336
Query: 407 SIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466
+DLS N + + + + N + G
Sbjct: 337 EFLDLSENL--------MVEEYLKNSACKGAWPSLQT--------LVLSQNHLRSMQKTG 380
Query: 467 IDGRSLGTQVEVNFMTKNRYESYKGVI--LDYMAGLDLSSNKLTGDIPSEICDLQNIHGL 524
+L + +++N + + M L+LSS + + + I Q + L
Sbjct: 381 EILLTL-KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVL 436
Query: 525 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
++S+N L S L+ L +S NKL +P + L +S N L
Sbjct: 437 DVSNNNLD-SFSLFLPRLQ---ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 4e-16
Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 19/221 (8%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSM-EADLL 58
+ ++++ + S +L SLE+L L +N L + L+ LS +
Sbjct: 317 VENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSM 376
Query: 59 QVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
Q E L L L + +P+ +++L+LS +
Sbjct: 377 QKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP----QT 432
Query: 119 LEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
LEVL ++NN+ + L L IS N LP + P L M IS+N +
Sbjct: 433 LEVLDVSNNNLD--SFSLFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKS 487
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQ 219
++ L+ + + +N + +C +++L
Sbjct: 488 VPDGIFDRLTSLQKIWLHTNPW--------DCSCPRIDYLS 520
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 2/122 (1%)
Query: 500 LDLSSNKLTGDIPSE-ICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L + + + +I L +++ L + L +S +++ I L L ++
Sbjct: 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLEL 618
+ L S+ ++ +L+ + ++S LL+L
Sbjct: 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLT-DESFNELLKL 246
Query: 619 LE 620
L
Sbjct: 247 LR 248
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 5e-33
Identities = 85/430 (19%), Positives = 151/430 (35%), Gaps = 45/430 (10%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
++ I L L S L ++ L ++
Sbjct: 10 QDTPINQIFT--DTALAEKMKTVLGKTNVTD-TVSQTDLDQVTTL---------QADRLG 57
Query: 62 IENCLPTFQ----LKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117
I++ + + L ++ N L I L + L + +++N++A P L N T
Sbjct: 58 IKS-IDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP---LANLT 112
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
L L L NN + L L++SSN + + L L ++ +
Sbjct: 113 NLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG---LTSLQQLSFGNQVTD 169
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237
+ + L LD+SSNK + S + +LE L +NN LT
Sbjct: 170 ---LKPLANLTTLERLDISSNKVSDI---SVLAKLTNLESLIATNNQISD--ITPLGILT 221
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297
L L L+ N L + L LD++NN +S P + + L L + N +
Sbjct: 222 NLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQI 277
Query: 298 EGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357
P L L L+++EN L + NL ++ +L L N + P + +
Sbjct: 278 SNISP--LAGLTALTNLELNENQLE-DISPISNLKNLTYLTLYFNNISDISP--VSSLTK 332
Query: 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
L+ L +N + +N+ L N + P L L +++ + L+
Sbjct: 333 LQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388
Query: 418 GSIPACITNL 427
+ N+
Sbjct: 389 NAPVNYKANV 398
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-30
Identities = 85/425 (20%), Positives = 154/425 (36%), Gaps = 42/425 (9%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
S+NQL+ I P + NLT L + + +N+ LANL+ L L
Sbjct: 75 FSNNQLTDITP--LKNLTKLVDILMNNNQIA----DITPLANLTNLTGLTLFNN------ 122
Query: 61 KIENCLPTF----QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116
+I + + L L L + + I L +L+ L N++ P L N
Sbjct: 123 QITD-IDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFG-NQVTDLKP---LANL 176
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
T LE L +++N S + + L SL ++N + P + L LD ++++ N
Sbjct: 177 TTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQL 233
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNL 236
+ ++ + L LD+++N+ + +P++ L L+L N L
Sbjct: 234 KD--IGTLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISN--ISPLAGL 286
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
T L L L+ N L++ L L + N++S P + + + L L N
Sbjct: 287 TALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGS 356
+ NL + L N +S + NL+ + L L A + N S
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQIS-DLTPLANLTRITQLGLNDQAWTNAPVNYKANVS 399
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
T+ P I++ + + N + +
Sbjct: 400 IPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTIGKGTTTF 456
Query: 417 NGSIP 421
+G++
Sbjct: 457 SGTVT 461
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 121 bits (307), Expect = 9e-30
Identities = 88/427 (20%), Positives = 152/427 (35%), Gaps = 61/427 (14%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
+ I + L +L + +N+ + L L
Sbjct: 54 DRLGIKSI--DGVEYLNNLTQINFSNNQLT-------DITPLKNLT-------------- 90
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+L + + N + I L + NL L L +N++ P L+N T L
Sbjct: 91 --------KLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP---LKNLTNLNR 138
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
L L++N+ S S L L N T P L L+ ++IS N
Sbjct: 139 LELSSNTISDISALSGLTSLQQLSF-GNQVTDLKPLAN---LTTLERLDISSNKVSD--I 192
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241
S + K+ L L ++N+ + +P+ +L+ L L+ N +LT L
Sbjct: 193 SVLAKLTNLESLIATNNQISDI---TPLGILTNLDELSLNGNQLKD--IGTLASLTNLTD 247
Query: 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
L L NN S L L L + N +S P + + L L +++N LE
Sbjct: 248 LDLANNQISNLAPLSGLTK--LTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303
Query: 302 PVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETL 361
P +NL L L + NN+S + +L+ ++ L+ +N + S +++ + + L
Sbjct: 304 P--ISNLKNLTYLTLYFNNIS-DISPVSSLTKLQRLFFYNNKV--SDVSSLANLTNINWL 358
Query: 362 DLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI- 420
N P + + + L L +SI + N I
Sbjct: 359 SAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPV---NYKANVSIPNTVKNVTGALIA 413
Query: 421 PACITNL 427
PA I++
Sbjct: 414 PATISDG 420
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 93/464 (20%), Positives = 161/464 (34%), Gaps = 57/464 (12%)
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
+ + +A + + N T + Q L ++ + +
Sbjct: 7 TITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTD---LDQVTTLQADRLGI--KSI 61
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241
+ + L ++ S+N+ +P+ N L + ++NN NLT L
Sbjct: 62 DGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQIAD--ITPLANLTNLTG 116
Query: 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
L L NN + L + L L++S+N +S + ++L LS + +
Sbjct: 117 LTLFNNQITDIDPLKNLTN--LNRLELSSNTISDISA--LSGLTSLQQLSFGNQVTD--- 169
Query: 302 PVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
NL L+ LDIS N +S IS L L+++E L +N + P I + L+
Sbjct: 170 LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGIL--TNLDE 225
Query: 361 LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420
L L N + + +NL L L N + P L L KL+ + L N+++
Sbjct: 226 LSLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281
Query: 421 PACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNF 480
P + L + N + QL I S +
Sbjct: 282 P--LAGL----------------------TALTNLELNENQLE--DISPISNLKNLTYLT 315
Query: 481 MTKNRYESYKGVI-LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESF 539
+ N V L + L +NK++ S + +L NI+ L+ HN +S P
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--L 371
Query: 540 SNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583
+NL I L L+ + + L P
Sbjct: 372 ANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPA 415
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-23
Identities = 77/381 (20%), Positives = 137/381 (35%), Gaps = 53/381 (13%)
Query: 207 SPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVL 266
T L N + +L ++ L D DG+ + L +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQI 73
Query: 267 DISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI 326
+ SNN L+ P + N + L + M+ N + P NL L L + N ++ I
Sbjct: 74 NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD--I 127
Query: 327 STL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRAL 385
L NL+++ L L SN + S + + ++L+ L N P + + L L
Sbjct: 128 DPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERL 182
Query: 386 LLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-ACITNLLFWKVGSRYLSGFVMVV 444
+ N + L +L L + ++N+++ P +TNL
Sbjct: 183 DISSNKVSDISV--LAKLTNLESLIATNNQISDITPLGILTNL---------------DE 225
Query: 445 MDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI-LDYMAGLDLS 503
+ L N L I + T + + N+ + + L + L L
Sbjct: 226 LSL-------NGNQ-----LKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLG 273
Query: 504 SNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL 563
+N+++ S + L + L L+ N L P SNLK + L L N ++ P +
Sbjct: 274 ANQISN--ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--V 327
Query: 564 TELHSLSKFDVSYNDLSGPIP 584
+ L L + N +S
Sbjct: 328 SSLTKLQRLFFYNNKVSDVSS 348
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 1e-10
Identities = 46/276 (16%), Positives = 93/276 (33%), Gaps = 42/276 (15%)
Query: 311 LQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370
L I+++ + + L+ L + ++ T + TL
Sbjct: 3 LGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDL--DQVTTLQADRLGI-- 58
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP-ACITNLLF 429
+ + +NL + N L P L L KL + +++N++ P A +TNL
Sbjct: 59 KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNL-- 114
Query: 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489
+ L + N + ID T + ++ N
Sbjct: 115 -------------TGLTL-------FNNQ-----ITDIDPLKNLTNLNRLELSSNTISDI 149
Query: 490 KGVI-LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESL 548
+ L + L + + +L + L++S N +S + L +ESL
Sbjct: 150 SALSGLTSLQQLSFGNQVTD---LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESL 204
Query: 549 DLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584
++N+++ P L L +L + ++ N L
Sbjct: 205 IATNNQISDITP--LGILTNLDELSLNGNQLKDIGT 238
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 8e-08
Identities = 21/119 (17%), Positives = 42/119 (35%), Gaps = 6/119 (5%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L L N ++ P + L + L +N +S S +NL I L HN+++
Sbjct: 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLT 369
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLEL 618
P L L +++ ++ + + + + + L P + E
Sbjct: 370 P--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEP 426
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 5e-06
Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 26/166 (15%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ N +S I P +++LT L+ L Y+NK SLANL+ +
Sbjct: 316 LYFNNISDISP--VSSLTKLQRLFFYNNKVS----DVSSLANLTNINWLSAG-------- 361
Query: 61 KIENCLPTF-------QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLL 113
N + ++ L L + P N+ + N +
Sbjct: 362 --HNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKA--NVSIPNTVKNVTGALIAPATI 417
Query: 114 ENNTKLEVLYLTNNSFSGF-QLTSAQHGLISLDISSNNFTGKLPQN 158
+ +T N S +++ +++ + F+G + Q
Sbjct: 418 SDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQP 463
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 2e-32
Identities = 70/478 (14%), Positives = 149/478 (31%), Gaps = 52/478 (10%)
Query: 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222
+ ++ +S + + S ++ LD+S N + ++S + + LE L LS+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67
Query: 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG 282
N + +L+ L L L+NN+ LL + L +NN++S +
Sbjct: 68 NVL--YETLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSC--S 117
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQ 340
+ ++ N + + + +Q LD+ N + + L + ++EHL LQ
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 341 SNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQL 400
N + + + L+TLDL N + + + + + LR N L I L
Sbjct: 178 YNFIY-DVKGQVVFAK-LKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233
Query: 401 CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTV 460
+ L DL N + + + + ++ +
Sbjct: 234 RFSQNLEHFDLRGNGFHCG---TLRDFFSKNQRVQTVA-----------------KQTVK 273
Query: 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT-------GDIPS 513
+L+ + ++ T E D + L + L +
Sbjct: 274 KLTGQNEEECTVPTLGHYGA---YCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330
Query: 514 EICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSLS 570
E + ++ I + + +L+ L+ Q+ EL
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390
Query: 571 KFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAED 628
+ V +L ++ R + N + +
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ--NNAIRDWDMYQHKETQ 446
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 2e-28
Identities = 63/423 (14%), Positives = 123/423 (29%), Gaps = 48/423 (11%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
++ + L L S+ + +++ L L N S LA +KLE+ LS
Sbjct: 17 VTDSSLKQALASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLS-------- 66
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+ L + L+ LDL++N + L +E
Sbjct: 67 -----------------SNVLYETLDL-ESLSTLRTLDLNNNYVQE------LLVGPSIE 102
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG-N 179
L+ NN+ S + Q G ++ +++N T L ++ +++ N + N
Sbjct: 103 TLHAANNNISRVSCSRGQ-GKKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN 160
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
L L++ N L+ L LS+N + P + + +
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY---DVKGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216
Query: 240 LFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS-GHIPSWMGNFSNLYILSMSKN-LL 297
++ L NN I+ L S L D+ N G + + + ++ L
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKL 275
Query: 298 EGNIPVQFNNLAILQILDISENNLSGSMIS---TLNLSSVEHLYLQSNALGGSIPNTIFR 354
G + + +L L L Q + +
Sbjct: 276 TGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSET-ERLECEREN 334
Query: 355 GSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
+ +D + I L + L + + +L
Sbjct: 335 QARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV 394
Query: 415 RLN 417
Sbjct: 395 GQI 397
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 7e-27
Identities = 56/425 (13%), Positives = 118/425 (27%), Gaps = 53/425 (12%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N LS I + +A T LE L L N L+ L +LS L L+
Sbjct: 41 LSGNPLSQISAADLAPFTKLELLNLSSN----VLYETLDLESLSTLRTLDLN-------- 88
Query: 61 KIENCLPTF----QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116
N + ++ L N N+ + K + L++NK+
Sbjct: 89 --NNYVQELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKIT-MLRDLDEGCR 143
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHGLIS---LDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
++++ L L N + L++ N + +V KL +++S
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSS 200
Query: 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNY 233
N + G+ + + +NK + ++ + +LE L N F ++
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF 257
Query: 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293
+ + + + L
Sbjct: 258 F-SKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIAL------ 310
Query: 294 KNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF 353
+L + N + + ++ + +
Sbjct: 311 -------------KRKEHALLSGQGSETERLECERENQARQREIDALKEQY-RTVIDQVT 356
Query: 354 RG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412
A TL+ + ++ + H+ L L + + H + L ++
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIE-LQHATEEQSPLQLLRAI 415
Query: 413 HNRLN 417
R
Sbjct: 416 VKRYE 420
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 2e-25
Identities = 64/521 (12%), Positives = 136/521 (26%), Gaps = 81/521 (15%)
Query: 84 IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLIS 143
I + K ++ + L L ++ ++ L L+ N S
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQIS---------- 50
Query: 144 LDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGE 203
+ + L LL++SSN
Sbjct: 51 -------------------------------------AADLAPFTKLELLNLSSNVLY-- 71
Query: 204 LSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSEL 263
+ + +L L L+NN + + L+ NN+ S ++ +
Sbjct: 72 -ETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSCSRGQG--K 122
Query: 264 MVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG-NIPVQFNNLAILQILDISENNLS 322
+ ++NN ++ G S + L + N ++ N + L+ L++ N +
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182
Query: 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL 382
+ + + ++ L L SN L + + + + LR+N I + NL
Sbjct: 183 -DVKGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNL 239
Query: 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVM 442
LRGN + + ++ + + +
Sbjct: 240 EHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTV--PTLGHYGAYCC 296
Query: 443 VVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDL 502
+ AD L G + + E + R +D
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE-------------IDA 343
Query: 503 SSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QIP 560
+ I Q L L + ++
Sbjct: 344 LKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHAT 403
Query: 561 PQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNL 601
+ + L L Y ++ + + D Y+
Sbjct: 404 EEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKE 444
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 1e-12
Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 34/236 (14%)
Query: 347 SIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
+I G+ + + D+ + N++ L L GN L L KL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 407 SIMDLSHNRLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLD 465
+++LS N L ++ ++ L +DL N +L
Sbjct: 61 ELLNLSSNVLYETLDLESLSTL---------------RTLDL-------NNNYVQEL--- 95
Query: 466 GIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525
+G +E N + L++NK+T + + L+
Sbjct: 96 -----LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 526 LSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
L N + + E ++ +E L+L +N + + Q+ L D+S N L+
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 6e-05
Identities = 26/226 (11%), Positives = 55/226 (24%), Gaps = 30/226 (13%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFK--------------------------GRL 34
+ +N+L I + +LE+ L N F G+
Sbjct: 221 LRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279
Query: 35 FSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNL 94
C++ L + ++ L + +LS + +Q
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIA-LKRKEHALLSGQGSETERLECERENQARQ 338
Query: 95 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG-FQLTSAQHGLISLDISSNNFTG 153
+ +D + + L + H + +
Sbjct: 339 REIDALKEQYR-TVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397
Query: 154 KLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK 199
+L P I K E + + +R D+ +K
Sbjct: 398 ELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 1e-31
Identities = 70/350 (20%), Positives = 139/350 (39%), Gaps = 26/350 (7%)
Query: 70 QLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNS 128
K+++ N + +P LL F ++ L+L+ ++ T+ ++ LY+ N+
Sbjct: 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNA 104
Query: 129 FSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI-G 185
Q+ L L + N+ + LP+ + PKL +++S N+ E I
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQ 162
Query: 186 KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245
L+ L +SSN+ L+ ++ SL +S N + L
Sbjct: 163 ATTSLQNLQLSSNR----LTHVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDAS 213
Query: 246 NNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305
+N + ++ + L +L + +N+L+ +W+ N+ L + +S N LE + F
Sbjct: 214 HNSIN-VVRGPVNVE--LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268
Query: 306 NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365
+ L+ L IS N L + + +++ L L N L + + LE L L
Sbjct: 269 VKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDH 327
Query: 366 NYFFGRIPHQINEHSNLRALLLRGNYLQG-PIPHQLCQLRKLSIMDLSHN 414
N + ++ H L+ L L N + + + ++ D +
Sbjct: 328 N-SIVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQH 374
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 4e-27
Identities = 64/374 (17%), Positives = 125/374 (33%), Gaps = 58/374 (15%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLS------ME 54
++ + + +++ + +E L L D + + A ++ + +
Sbjct: 52 FKNSTMRKLPAALLDSFRQVELLNLNDLQI--EEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Query: 55 ADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLL 113
+ Q L VL L +L +P + H L L +S+N L
Sbjct: 110 PHVFQ-------NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTF 161
Query: 114 ENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
+ T L+ L L++N + L S L ++S N +
Sbjct: 162 QATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLS--------------------- 199
Query: 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNY 233
++ + LD S N ++ L L+L +NN
Sbjct: 200 ---------TLAIPIAVEELDASHNS----INVVRGPVNVELTILKLQHNNL--TDTAWL 244
Query: 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293
+N L+ + L N + ++ L L ISNN L + + L +L +S
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLS 303
Query: 294 KNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF 353
N L ++ L+ L + N++ + ++++L L N + +F
Sbjct: 304 HNHLL-HVERNQPQFDRLENLYLDHNSI--VTLKLSTHHTLKNLTLSHNDWDCNSLRALF 360
Query: 354 RGSALETLDLRDNY 367
R A +D D +
Sbjct: 361 RNVARPAVDDADQH 374
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-24
Identities = 64/341 (18%), Positives = 128/341 (37%), Gaps = 29/341 (8%)
Query: 92 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNF 151
+N+K + + N + + +++ T + + GF+ + + + ++
Sbjct: 1 YNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQ--TQDVYFGFEDITLNN-QKIVTFKNSTM 57
Query: 152 TGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTN 211
KLP + +++ +N++ E + ++ L + N L N
Sbjct: 58 R-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQN 115
Query: 212 CFSLEWLQLSNNN---FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLD 267
L L L N+ IF N +L L + NN+ +I+D ++ + L L
Sbjct: 116 VPLLTVLVLERNDLSSLPRGIF---HNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQ 171
Query: 268 ISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIS 327
+S+N L+ H+ +L+ ++S NLL ++ LD S N+++ ++
Sbjct: 172 LSSNRLT-HVDL--SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN--VVR 221
Query: 328 TLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH-SNLRALL 386
+ L LQ N L + + L +DL N +I + L L
Sbjct: 222 GPVNVELTILKLQHNNL--TDTAWLLNYPGLVEVDLSYNEL-EKIMYHPFVKMQRLERLY 278
Query: 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427
+ N L + + L ++DLSHN L +
Sbjct: 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 7e-20
Identities = 56/331 (16%), Positives = 116/331 (35%), Gaps = 38/331 (11%)
Query: 253 IKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312
I L + I + +N I++ + + ++ ++
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 313 ILDISENNLSG-SMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFG 370
+L++++ + + +++ LY+ NA+ +P +F+ L L L N
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-S 130
Query: 371 RIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429
+P I + L L + N L+ L + LS NRL + I +L
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-- 188
Query: 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489
+S + + ++ VE + N
Sbjct: 189 ----------------------------FHANVSYNLLSTLAIPIAVEELDASHNSINVV 220
Query: 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549
+G + + L L N LT D + + + ++LS+N L + F ++ +E L
Sbjct: 221 RGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278
Query: 550 LSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+S+N+L + + +L D+S+N L
Sbjct: 279 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 308
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-07
Identities = 29/168 (17%), Positives = 55/168 (32%), Gaps = 26/168 (15%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ N L+ + + N L + L N+ + + +LE +S
Sbjct: 233 LQHNNLTDT--AWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYIS-------- 280
Query: 61 KIENCLPTF--------QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL 112
N L LKVL L + +L + L+ L L HN +
Sbjct: 281 --NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV-TLK--- 334
Query: 113 LENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMG 160
L + L+ L L++N + L + + + + K+ +
Sbjct: 335 LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLE 382
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 9e-31
Identities = 84/393 (21%), Positives = 142/393 (36%), Gaps = 55/393 (13%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
++ I P A+L L + +LE
Sbjct: 8 LPAPINQIFP--DADLAEGIRAVLQKASVTD-------VVTQEELE-------------- 44
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+ L + + I NL+YL+L+ N++ P L N KL
Sbjct: 45 --------SITKLVVAGEKVASIQGIEYLT-NLEYLNLNGNQITDISP---LSNLVKLTN 92
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
LY+ N + L L ++ +N + P L K+ +N+ N ++
Sbjct: 93 LYIGTNKITDISALQNLTNLRELYLNEDNISDISPLAN---LTKMYSLNLGANHNLSDL- 148
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241
S + M GL L V+ +K +P+ N L L L+ N + +LT L +
Sbjct: 149 SPLSNMTGLNYLTVTESKVKDV---TPIANLTDLYSLSLNYNQIED--ISPLASLTSLHY 203
Query: 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
N + + + L L I NN ++ P + N S L L + N + +I
Sbjct: 204 FTAYVNQITDIT--PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS-DI 258
Query: 302 PVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
+L L++L++ N +S IS L NLS + L+L +N LG I + L T
Sbjct: 259 NA-VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTT 315
Query: 361 LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ 393
L L N+ P + S + + ++
Sbjct: 316 LFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 1e-29
Identities = 66/351 (18%), Positives = 121/351 (34%), Gaps = 24/351 (6%)
Query: 71 LKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFS 130
L+ + I L + E + L + +
Sbjct: 2 AATLATLPAPINQIFP-DADLAEGIRAVLQKASVTDVVT---QEELESITKLVVAGEKVA 57
Query: 131 GFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL 190
Q L L+++ N T P + L KL + I N S++ + L
Sbjct: 58 SIQGIEYLTNLEYLNLNGNQITDISPLSN---LVKLTNLYIGTNKIT--DISALQNLTNL 112
Query: 191 RLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS 250
R L ++ + + SP+ N + L L N+ + N+T L +L + +
Sbjct: 113 RELYLNEDNISDI---SPLANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVK 168
Query: 251 GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAI 310
L L L ++ N + P + + ++L+ + N + P N+
Sbjct: 169 DVTPIANLTD--LYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222
Query: 311 LQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370
L L I N ++ + NLS + L + +N + S N + + L+ L++ N
Sbjct: 223 LNSLKIGNNKIT-DLSPLANLSQLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSNQI-- 277
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421
+N S L +L L N L + L L+ + LS N + P
Sbjct: 278 SDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 2e-09
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L++ SN+++ S + +L ++ L L++N L E L + +L LS N +
Sbjct: 270 LNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P L L + D + +
Sbjct: 328 P--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L++ +N+++ + + DL + LN+ N +S +NL + SL L++N+L +
Sbjct: 248 LEIGTNQISD--INAVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNED 303
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIP 584
+ L +L+ +S N ++ P
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP 328
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 1e-07
Identities = 17/85 (20%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L+L+ N++T S + +L + L + N ++ + NL + L L+ + ++ I
Sbjct: 71 LNLNGNQITD--ISPLSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD-I 125
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIP 584
P L L + ++ N +
Sbjct: 126 SP-LANLTKMYSLNLGANHNLSDLS 149
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 2e-07
Identities = 19/85 (22%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L L+ + ++ S + +L ++ LNL N S SN+ + L ++ +K+ +
Sbjct: 115 LYLNEDNISD--ISPLANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKD-V 170
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIP 584
P + L L ++YN + P
Sbjct: 171 TP-IANLTDLYSLSLNYNQIEDISP 194
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L L+ N++ S + L ++H N ++ P +N+ + SL + +NK+
Sbjct: 182 LSLNYNQIED--ISPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS 237
Query: 560 PPQLTELHSLSKFDVSYNDLSGP 582
P L L L+ ++ N +S
Sbjct: 238 P--LANLSQLTWLEIGTNQISDI 258
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 2e-06
Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 6/85 (7%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L +T + +L++I L ++ ++ + L +E L+L+ N++
Sbjct: 27 AVLQKASVTDVVT--QEELESITKLVVAGEKVAS--IQGIEYLTNLEYLNLNGNQITDIS 82
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIP 584
P L+ L L+ + N ++
Sbjct: 83 P--LSNLVKLTNLYIGTNKITDISA 105
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 6/85 (7%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L + P DL L ++ + L+ I L ++ K+
Sbjct: 5 LATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS-- 58
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIP 584
+ L +L +++ N ++ P
Sbjct: 59 IQGIEYLTNLEYLNLNGNQITDISP 83
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 93/517 (17%), Positives = 160/517 (30%), Gaps = 105/517 (20%)
Query: 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLEN------------NT 117
L+ + NL +P + + + ++ N P E +
Sbjct: 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDR 71
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
+ L L N S L L SL S N+ T +LP+ L L N + +
Sbjct: 72 QAHELELNNLGLS--SLPELPPHLESLVASCNSLT-ELPELPQ-SLKSLLVDNNNLKALS 127
Query: 178 GNIPS---------------SIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222
P + L+++DV +N +L P SLE++ N
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLEFIAAGN 182
Query: 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG 282
N + P NL L +Y DNN K+ D L + NN L +P +
Sbjct: 183 NQL--EELPELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNILE-ELPE-LQ 234
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSN 342
N L + NLL+ +P +L L + D +L +L+ ++ +
Sbjct: 235 NLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELP---QSLTFLDVSENIFS 290
Query: 343 ALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402
L PN L L+ N I + +L L + N L +P +
Sbjct: 291 GLSELPPN-------LYYLNASSN----EIRSLCDLPPSLEELNVSNNKLIE-LPALPPR 338
Query: 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQL 462
L +L S N L +P NL QL
Sbjct: 339 LERL---IASFNHLA-EVPELPQNL--------------------------------KQL 362
Query: 463 SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGL---DLSSNKLTGDIPSEICDLQ 519
++ R + R S+ + + L + +N L + P ++
Sbjct: 363 HVEYNPLREF--PDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPDIPESVE 419
Query: 520 NIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556
+ L ++ + + +E H+ +
Sbjct: 420 D---LRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 87/449 (19%), Positives = 155/449 (34%), Gaps = 72/449 (16%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLS--MEADLLQ 59
S+ L+ +P N+ S ++++ ++ V +L ++ +
Sbjct: 19 HSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPP--GNGEQREMAVSRLRDCLDRQAHE 75
Query: 60 VKIENC----LPT--FQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLL 113
+++ N LP L+ L +L +P +L + + L+ P
Sbjct: 76 LELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPP---- 131
Query: 114 ENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
LE L ++NN L +D+ +N+ KLP P L+ +
Sbjct: 132 ----LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGN 182
Query: 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNY 233
N E +P + + L + +N L + P SLE + NN + P
Sbjct: 183 NQLE-ELP-ELQNLPFLTAIYADNNS----LKKLPD-LPLSLESIVAGNNIL--EELPEL 233
Query: 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293
NL L +Y DNN + D L L++ +N+L+ +P + + L +
Sbjct: 234 QNLPFLTTIYADNNLLK-TLPDLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVSENI 288
Query: 294 KNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF 353
+ L P L L+ S N + S+E L + +N L +P
Sbjct: 289 FSGLSELPPN-------LYYLNASSNEIRS---LCDLPPSLEELNVSNNKL-IELPALP- 336
Query: 354 RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG--PIPHQLCQLR------- 404
LE L N+ +P NL+ L + N L+ IP + LR
Sbjct: 337 --PRLERLIASFNH-LAEVPELP---QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAE 390
Query: 405 ------KLSIMDLSHNRLNGSIPACITNL 427
L + + N L P ++
Sbjct: 391 VPELPQNLKQLHVETNPLR-EFPDIPESV 418
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 3e-25
Identities = 93/468 (19%), Positives = 160/468 (34%), Gaps = 99/468 (21%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGK-------------M 187
L S+N T ++P + + + +E N P G+
Sbjct: 13 LQEPLRHSSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70
Query: 188 QGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNN 247
+ L++++ LS P LE L S N+ ++ +L LL +
Sbjct: 71 RQAHELELNNLG----LSSLP-ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLK 124
Query: 248 HFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNN 307
S L L +SNN L +P + N S L I+ + N L+ +P +
Sbjct: 125 ALSDLP-------PLLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPS 174
Query: 308 LAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNY 367
L + + N L + NL + +Y +N+L +P+ LE++ +N
Sbjct: 175 L---EFIAAGNNQLE-ELPELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNI 226
Query: 368 FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427
++ L + N L+ +P L L ++ N L +P +L
Sbjct: 227 L--EELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEAL---NVRDNYLT-DLPELPQSL 279
Query: 428 LFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYE 487
F V SG + +L L+ + RSL
Sbjct: 280 TFLDVSENIFSGLSELPPNLY------------YLNASSNEIRSLCDL------------ 315
Query: 488 SYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 547
+ L++S+NKL ++P+ L+ L S N L+ +PE NLK
Sbjct: 316 ------PPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---Q 361
Query: 548 LDLSHNKLNG--QIPPQLTELH-------------SLSKFDVSYNDLS 580
L + +N L IP + +L +L + V N L
Sbjct: 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 7e-24
Identities = 83/421 (19%), Positives = 139/421 (33%), Gaps = 69/421 (16%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
S N L+ LP + +L SL L L +
Sbjct: 98 ASCNSLT-ELPELPQSLKSLLVDNNNLKALSD------LPPLLEYL---------GVSNN 141
Query: 61 KIENCLPTF----QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116
++E LP LK++ + N +L +P+ +L+++ +N+L P L+N
Sbjct: 142 QLEK-LPELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLE-ELPE--LQNL 194
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
L +Y NNS +L L S+ +N +LP+ LP L + N
Sbjct: 195 PFLTAIYADNNSLK--KLPDLPLSLESIVAGNNILE-ELPELQN--LPFLTTIYADNNLL 249
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNL 236
+ +P ++ L + D SL +L +S N F G
Sbjct: 250 K-TLPDLPPSLEALNVRDNYLTDLPELPQ--------SLTFLDVSENIFSG--LSEL--P 296
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
L +L +N + D L L++SNN L +P+ L L S N
Sbjct: 297 PNLYYLNASSNEIR-SLCDLP---PSLEELNVSNNKLI-ELPALPPR---LERLIASFNH 348
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGS 356
L +P NL + L + N L ++ L+ N+ +P
Sbjct: 349 LA-EVPELPQNL---KQLHVEYNPLREFPDIPESVED-----LRMNSHLAEVPELP---Q 396
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
L+ L + N P ++ L + + P KL H+
Sbjct: 397 NLKQLHVETNPL-REFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHH 452
Query: 417 N 417
+
Sbjct: 453 H 453
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 1e-11
Identities = 45/277 (16%), Positives = 80/277 (28%), Gaps = 54/277 (19%)
Query: 306 NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365
+ LQ +NL+ + N+ S Y + + P + LRD
Sbjct: 8 VSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67
Query: 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACIT 425
L L L +P L L S N L +P
Sbjct: 68 CL-----------DRQAHELELNNLGLS-SLPELPPHLESL---VASCNSLT-ELPELPQ 111
Query: 426 NLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNR 485
+L + L V + + + + L + L E+ + +
Sbjct: 112 SL-------KSLL-----VDNNNLKALSDLPPLLEYLGVSNNQLEKLP---ELQNSSFLK 156
Query: 486 YESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMI 545
+D+ +N L +P L+ + +N L +PE NL +
Sbjct: 157 I-------------IDVDNNSLK-KLPDLPPSLEF---IAAGNNQLE-ELPE-LQNLPFL 197
Query: 546 ESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGP 582
++ +N L ++P L S+ N L
Sbjct: 198 TAIYADNNSLK-KLPDLPLSLESI---VAGNNILEEL 230
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 31/225 (13%), Positives = 67/225 (29%), Gaps = 57/225 (25%)
Query: 372 IPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWK 431
I + ++ L+ L + L +P + ++ + + + + P
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQR--- 58
Query: 432 VGSRYLSGFVMVVMDLGVADIR-NYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYK 490
++ V+ +R +L L+ + SL
Sbjct: 59 --------------EMAVSRLRDCLDRQAHELELNNLGLSSLPEL--------------- 89
Query: 491 GVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPE------------- 537
++ L S N LT ++P L+++ N + LS P
Sbjct: 90 ---PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK 145
Query: 538 --SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
N ++ +D+ +N L ++P L + N L
Sbjct: 146 LPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI---AAGNNQLE 186
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 4e-07
Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 18/98 (18%)
Query: 500 LDLSSNKLTGDIPSEI-------------CDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 546
+ ++ + P C + H L L++ LS S+PE +L E
Sbjct: 39 YYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPELPPHL---E 94
Query: 547 SLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584
SL S N L ++P L SL + + LS P
Sbjct: 95 SLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPP 131
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 17/85 (20%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ +N L E+ +L + + +N L ++P+ +L+ +L++ N L +
Sbjct: 220 IVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLT-DL 272
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIP 584
P L L + ++ LS P
Sbjct: 273 PELPQSLTFLDVSENIFSGLSELPP 297
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 13/85 (15%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L + N L + P +++ L N +PE NLK L + N L +
Sbjct: 362 LHVEYNPLR-EFPDIPESVED-----LRMNSHLAEVPELPQNLK---QLHVETNPLR-EF 411
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIP 584
P + L ++ + P
Sbjct: 412 PDIPESVEDL---RMNSERVVDPYE 433
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 7e-28
Identities = 74/340 (21%), Positives = 127/340 (37%), Gaps = 20/340 (5%)
Query: 63 ENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVL 122
C + Q + + +P + + LDL N++ + LE L
Sbjct: 5 PRCECSAQDRAVLCHRKRFVAVPEGIPT--ETRLLDLGKNRIK-TLNQDEFASFPHLEEL 61
Query: 123 YLTNNSFSGFQLT--SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
L N S + + L +L + SN +P + L L ++IS+N +
Sbjct: 62 ELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV-IL 119
Query: 181 PSSI-GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV--NLT 237
+ + L+ L+V N +S + SLE L L N P +L
Sbjct: 120 LDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL--TSIPTEALSHLH 176
Query: 238 RLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
L+ L L + + + I+D + L VL+IS+ + NL LS++
Sbjct: 177 GLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN 235
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG 355
L + +L L+ L++S N +S S L L ++ + L L + FRG
Sbjct: 236 LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEPYAFRG 294
Query: 356 -SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQ 393
+ L L++ N + + NL L+L N L
Sbjct: 295 LNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 7e-27
Identities = 67/349 (19%), Positives = 127/349 (36%), Gaps = 60/349 (17%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ N++ + A+ LE L L +N + NL
Sbjct: 39 LGKNRIKTLNQDEFASFPHLEELELNENIV--SAVEPGAFNNLF---------------- 80
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKL 119
L+ L L + L +IP + NL LD+S NK+ ++ ++ L
Sbjct: 81 ---------NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNL 130
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
+ L + +N L IS F+G L L+ + + K +
Sbjct: 131 KSLEVGDN-----DLVY---------ISHRAFSG---------LNSLEQLTLEKCNLTSI 167
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRL 239
++ + GL +L + + + L+ L++S+ + + PN + L
Sbjct: 168 PTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226
Query: 240 LFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWM-GNFSNLYILSMSKNLL 297
L + + + + + +R L L++S N +S I M L + + L
Sbjct: 227 TSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284
Query: 298 EGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNAL 344
+ F L L++L++S N L+ S ++ ++E L L SN L
Sbjct: 285 A-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 7e-23
Identities = 70/356 (19%), Positives = 129/356 (36%), Gaps = 66/356 (18%)
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY---ILSMS 293
T L L N +D L L+++ N +S + G F+NL+ L +
Sbjct: 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEP--GAFNNLFNLRTLGLR 88
Query: 294 KNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNT 351
N L+ IP+ F L+ L LDISEN + + +L +++ L + N L I +
Sbjct: 89 SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHR 146
Query: 352 IFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409
F G ++LE L L IP + H L L LR + + +L +L ++
Sbjct: 147 AFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205
Query: 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDG 469
++SH ++ L + LS+
Sbjct: 206 EISHWPYLDTMTPNCLYGL-----------------------------NLTSLSITH--- 233
Query: 470 RSLGTQVEVNFMTKNRYESYKGVILDYMAGL---DLSSNKLTGDIPSEI-CDLQNIHGLN 525
+ + + ++ L +LS N ++ I + +L + +
Sbjct: 234 --------------CNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQ 278
Query: 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKFDVSYNDLS 580
L L+ P +F L + L++S N+L + + + +L + N L+
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 8e-23
Identities = 60/256 (23%), Positives = 101/256 (39%), Gaps = 16/256 (6%)
Query: 166 LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF 225
+ C + IP+ RLLD+ N+ L+Q + LE L+L+ N
Sbjct: 16 VLCHRKRFVAVPEGIPTE------TRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIV 68
Query: 226 DGQIFPNY-VNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGN 283
+ P NL L L L +N I G+ S L LDIS N + + +
Sbjct: 69 S-AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQD 126
Query: 284 FSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQS 341
NL L + N L I + F+ L L+ L + + NL+ L +L + L L+
Sbjct: 127 LYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRH 185
Query: 342 NALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQL 400
+ +I + F+ L+ L++ + + NL +L + L +
Sbjct: 186 LNIN-AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244
Query: 401 CQLRKLSIMDLSHNRL 416
L L ++LS+N +
Sbjct: 245 RHLVYLRFLNLSYNPI 260
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-22
Identities = 63/328 (19%), Positives = 124/328 (37%), Gaps = 56/328 (17%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISE 318
+E +LD+ N + +F +L L +++N++ + FNNL L+ L +
Sbjct: 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89
Query: 319 NNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQI 376
N L + LS++ L + N + + + +F+ L++L++ DN I H+
Sbjct: 90 NRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDN-DLVYISHRA 147
Query: 377 -NEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGS- 434
+ ++L L L L L L L ++ L H +N I + F ++
Sbjct: 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-----AIRDYSFKRLYRL 202
Query: 435 RYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494
+ L +++ ++ + + G +L +
Sbjct: 203 KVLE--------------ISHWPYLDTMTPNCLYGLNLTS-------------------- 228
Query: 495 DYMAGLDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 553
L ++ LT +P L + LNLS+N +S L ++ + L
Sbjct: 229 -----LSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGG 282
Query: 554 KLNGQIPPQ-LTELHSLSKFDVSYNDLS 580
+L + P L+ L +VS N L+
Sbjct: 283 QLA-VVEPYAFRGLNYLRVLNVSGNQLT 309
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 79.8 bits (197), Expect = 7e-16
Identities = 55/257 (21%), Positives = 98/257 (38%), Gaps = 41/257 (15%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N++ +L + +L +L+ L + DN S + + L+ LE
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDL--VYISHRAFSGLNSLE------------- 155
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLL-HQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
L+L CNL IP L H L L L H + + + +L
Sbjct: 156 ------------QLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRL 202
Query: 120 EVLYLTNNSFSGFQLTSAQHG--LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
+VL +++ + + +G L SL I+ N T +P L L +N+S N
Sbjct: 203 KVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261
Query: 178 GNIPSSI-GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN---FDGQIFPNY 233
I S+ ++ L+ + + + A + L L +S N + +F
Sbjct: 262 -TIEGSMLHELLRLQEIQLVGGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH-- 317
Query: 234 VNLTRLLFLYLDNNHFS 250
++ L L LD+N +
Sbjct: 318 -SVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 8e-06
Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ + +P I L+L N + + F++ +E L+L+ N + +
Sbjct: 16 VLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAV 71
Query: 560 PPQ-LTELHSLSKFDVSYNDLS 580
P L +L + N L
Sbjct: 72 EPGAFNNLFNLRTLGLRSNRLK 93
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 19/88 (21%), Positives = 33/88 (37%), Gaps = 4/88 (4%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L++ N L I L ++ L L L+ E+ S+L + L L H +N
Sbjct: 133 LEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-A 190
Query: 559 IPPQ-LTELHSLSKFDVSYNDLSGPIPD 585
I L+ L ++S+ +
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTP 218
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 3e-27
Identities = 71/364 (19%), Positives = 130/364 (35%), Gaps = 32/364 (8%)
Query: 64 NCLPTFQLKVLSLPNCNLGVIPNFLLHQF------NLKYLDLSHNKLAGNFPTWLLENNT 117
C+ + + ++ + + F N K + ++ + P LL++
Sbjct: 17 KCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFR 75
Query: 118 KLEVLYLTNNSFSGFQLTS--AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNS 175
++E+L L + + H + L + N LP ++ +P L + + +N
Sbjct: 76 QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134
Query: 176 FEGNIPSSI-GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV 234
++P I L L +S+N + SL+ LQLS+N + +
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS-- 189
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
+ L + N S L + LD S+N ++ + L IL +
Sbjct: 190 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTILKLQH 241
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIF 353
N L + N L +D+S N L M + +E LY+ +N L ++
Sbjct: 242 NNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL-VALNLYGQ 298
Query: 354 RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
L+ LDL N+ + + L L L N + L+ L LSH
Sbjct: 299 PIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNL---TLSH 354
Query: 414 NRLN 417
N +
Sbjct: 355 NDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-26
Identities = 68/381 (17%), Positives = 142/381 (37%), Gaps = 30/381 (7%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
M + + + L + + + ++ + L + ++E+ L+ + + ++
Sbjct: 36 MQTQDVYFGFEDI--TLNNQKIVTFKNSTMRK--LPAALLDSFRQVELLNLN-DLQIEEI 90
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKL 119
++ L + + +P + L L L N L+ + P + N KL
Sbjct: 91 DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKL 149
Query: 120 EVLYLTNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
L ++NN+ + + Q L +L +SSN T + + ++P L N+S N
Sbjct: 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLS---LIPSLFHANVSYNLL- 204
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237
S++ + LD S N ++ L L+L +NN +N
Sbjct: 205 ----STLAIPIAVEELDASHNS----INVVRGPVNVELTILKLQHNNL--TDTAWLLNYP 254
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297
L+ + L N + ++ L L ISNN L + + L +L +S N L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313
Query: 298 EGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357
++ L+ L + N++ + ++++L L N + +FR
Sbjct: 314 L-HVERNQPQFDRLENLYLDHNSI--VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRN-- 368
Query: 358 LETLDLRDNYFFGRIPHQINE 378
+ + D +I +Q+
Sbjct: 369 VARPAVDDADQHCKIDYQLEH 389
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 90.4 bits (224), Expect = 5e-19
Identities = 56/331 (16%), Positives = 116/331 (35%), Gaps = 38/331 (11%)
Query: 253 IKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312
I L + I + +N I++ + + ++ ++
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 313 ILDISENNLSG-SMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFG 370
+L++++ + + +++ LY+ NA+ +P +F+ L L L N
Sbjct: 79 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDL-S 136
Query: 371 RIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429
+P I + L L + N L+ L + LS NRL + I +L
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSL-- 194
Query: 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489
+S + + ++ VE + N
Sbjct: 195 ----------------------------FHANVSYNLLSTLAIPIAVEELDASHNSINVV 226
Query: 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549
+G + + L L N LT D + + + ++LS+N L + F ++ +E L
Sbjct: 227 RGPVNVELTILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284
Query: 550 LSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+S+N+L + + +L D+S+N L
Sbjct: 285 ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL 314
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 65/430 (15%), Positives = 132/430 (30%), Gaps = 40/430 (9%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
MS+N L I TSL+ L L N+ + +L ++
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTH--VDLSLIPSLFHA---------NVSYN 202
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+ ++ L + ++ V+ + L L L HN L + L N L
Sbjct: 203 LLSTLAIPIAVEELDASHNSINVVRGPVNV--ELTILKLQHNNLT-DTAW--LLNYPGLV 257
Query: 121 VLYLTNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
+ L+ N L L IS+N L +P L +++S N
Sbjct: 258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL- 314
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG-QIFPNYVNLT 237
++ + + L L + N + ++ +L+ L LS+N++D + + N+
Sbjct: 315 HVERNQPQFDRLENLYLDHNS----IVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVA 370
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSEL-------MVLDISNNHLSGHIPSWMGNFSNLYIL 290
R D + + L E ++ I+ + + G S +
Sbjct: 371 RPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDTI 430
Query: 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPN 350
+ ++L L + L+ N L + + + +Q L +
Sbjct: 431 NSVQSLSHYITQQGGVPLQGNEQLEAEVNEL------RAEVQQLTNEQIQQEQLLQGLHA 484
Query: 351 TIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMD 410
I L +++ H R Q + ++ ++
Sbjct: 485 EIDTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFKLRE-TQARRTEADAKQKETEDLE 543
Query: 411 LSHNRLNGSI 420
+ L +
Sbjct: 544 QENIALEKQL 553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 67.3 bits (164), Expect = 7e-12
Identities = 37/207 (17%), Positives = 75/207 (36%), Gaps = 13/207 (6%)
Query: 219 QLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGL-----LRSSELMVLDISNNHL 273
Q N Q ++ + H + +D + + ++ N+ +
Sbjct: 4 QQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63
Query: 274 SGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLS 332
+ + +F + +L+++ +E F +Q L + N + N+
Sbjct: 64 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123
Query: 333 SVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGN 390
+ L L+ N L S+P IF L TL + +N RI + ++L+ L L N
Sbjct: 124 LLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSN 181
Query: 391 YLQGPIPHQLCQLRKLSIMDLSHNRLN 417
L + L ++S+N L+
Sbjct: 182 RLTHVDLSLIPSLFHA---NVSYNLLS 205
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 50/335 (14%), Positives = 106/335 (31%), Gaps = 23/335 (6%)
Query: 81 LGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHG 140
+G + H + L + + L ++ + Y + + A
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGSTALRPYHDVL----SQWQRHYNADRNRWHSAWRQANSN 56
Query: 141 LISLDISSNNFTGKLPQNMGI-VLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK 199
++ + + P + + P ++ L+ + + +
Sbjct: 57 NPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG 115
Query: 200 FAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV-NLTRLLFLYL-DNNHF-------- 249
EL + + LE L L+ N + P + +L RL L +
Sbjct: 116 LM-ELPDT-MQQFAGLETLTLARNPL--RALPASIASLNRLRELSIRACPELTELPEPLA 171
Query: 250 SGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLA 309
S L L + + +P+ + N NL L + + L + ++L
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP 229
Query: 310 ILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYF 368
L+ LD+ + + ++ L L+ + ++P I R + LE LDLR
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289
Query: 369 FGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQL 403
R+P I + +L+ + H+
Sbjct: 290 LSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 1e-22
Identities = 46/298 (15%), Positives = 99/298 (33%), Gaps = 20/298 (6%)
Query: 140 GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK 199
G +L + + + + ++ ++ +
Sbjct: 13 GRENLYFQGSTALRPYHDVLS-QWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRA 67
Query: 200 FAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV-NLTRLLFLYLDNNHFSGKIKDGLL 258
L+L + FP+ L+ L + +D ++ D +
Sbjct: 68 LKATADLLEDATQPGRVALELRSVPL--PQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQ 124
Query: 259 RSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318
+ + L L ++ N L +P+ + + + L LS+ +P +
Sbjct: 125 QFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183
Query: 319 N----NLSGSMISTL-----NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFF 369
N L + I +L NL +++ L ++++ L ++ I LE LDLR
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL 242
Query: 370 GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427
P + L+ L+L+ +P + +L +L +DL +P+ I L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQL 300
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 2e-18
Identities = 48/317 (15%), Positives = 97/317 (30%), Gaps = 55/317 (17%)
Query: 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKI------- 62
L L+ + D + + N +++A ++
Sbjct: 25 LRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRV 84
Query: 63 -----ENCLPTF--------QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFP 109
LP F L+ +++ L +P+ + L+ L L+ N L P
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALP 143
Query: 110 TWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIV------- 162
+ L L L I + +LP+ +
Sbjct: 144 ASI-------------------ASLNR----LRELSIRACPELTELPEPLASTDASGEHQ 180
Query: 163 -LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221
L L + + ++P+SI +Q L+ L + ++ + L + + + LE L L
Sbjct: 181 GLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLR 237
Query: 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM 281
P + L L L + + + R ++L LD+ +PS +
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI 297
Query: 282 GNFSNLYILSMSKNLLE 298
I+ + +L
Sbjct: 298 AQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 3e-11
Identities = 17/86 (19%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L+L S L P + L ++ + + L +P++ +E+L L+ N L +
Sbjct: 86 LELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-AL 142
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPD 585
P + L+ L + + +P+
Sbjct: 143 PASIASLNRLRELSIRACPELTELPE 168
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 3e-10
Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 1/86 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L + ++ L+ + I L + L+L + P F ++ L L +
Sbjct: 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPD 585
P + L L K D+ +P
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPS 295
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 15/81 (18%), Positives = 27/81 (33%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDL + P + L L ++P L +E LDL ++
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P + +L + V + +
Sbjct: 294 PSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 11/90 (12%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMI---------ESLDL 550
L L+ N L +P+ I L + L++ +PE ++ +SL L
Sbjct: 132 LTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 551 SHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+ +P + L +L + + LS
Sbjct: 191 EWTGIR-SLPASIANLQNLKSLKIRNSPLS 219
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 3e-06
Identities = 10/68 (14%), Positives = 21/68 (30%), Gaps = 2/68 (2%)
Query: 500 LDLSS-NKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L L + L +P +I L + L+L +P + L + + +
Sbjct: 258 LILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316
Query: 559 IPPQLTEL 566
+
Sbjct: 317 DQHRPVAR 324
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 1e-26
Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 17/257 (6%)
Query: 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222
+ ++ +S + + S ++ LD+S N + ++S + + LE L LS+
Sbjct: 9 GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSS 67
Query: 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG 282
N + +L+ L L L+NN+ LL + L +NN++S +
Sbjct: 68 NVL--YETLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC--S 117
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQ 340
+ ++ N + + + +Q LD+ N + + L + ++EHL LQ
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177
Query: 341 SNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQL 400
N + + + L+TLDL N + + + + + LR N L I L
Sbjct: 178 YNFI-YDVKGQVVFAK-LKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLVL-IEKAL 233
Query: 401 CQLRKLSIMDLSHNRLN 417
+ L DL N +
Sbjct: 234 RFSQNLEHFDLRGNGFH 250
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 106 bits (268), Expect = 1e-25
Identities = 57/335 (17%), Positives = 117/335 (34%), Gaps = 24/335 (7%)
Query: 84 IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQH--GL 141
I + K ++ + L L ++ ++ L L+ N S L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFA 201
L++SSN + L L ++++ N + + L ++N
Sbjct: 61 ELLNLSSNVLY-ETLDLES--LSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN-- 110
Query: 202 GELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSS 261
+S+ + + + L+NN + +R+ +L L N L SS
Sbjct: 111 --ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS 168
Query: 262 E-LMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENN 320
+ L L++ N + + + F+ L L +S N L + +F + A + + + N
Sbjct: 169 DTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK 225
Query: 321 LSGSMISTLNLSSVEHLYLQSNAL-GGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH 379
L + ++EH L+ N G++ + + ++T+ + ++ Q E
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT---VKKLTGQNEEE 282
Query: 380 SNLRALLLRGNYLQGPIPHQLCQ-LRKLSIMDLSH 413
+ L G Y +P L L H
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 2e-25
Identities = 53/360 (14%), Positives = 107/360 (29%), Gaps = 47/360 (13%)
Query: 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTF 69
+ + N + + D+ K +
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQ--ALASLRQSAW------------------------- 34
Query: 70 QLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNS 128
+K L L L I L F L+ L+LS N L LE+ + L L L NN
Sbjct: 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNY 91
Query: 129 FSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQ 188
+ + + +L ++NN + ++ + G + ++ N G
Sbjct: 92 VQELLVGPS---IETLHAANNNIS-RVSCSRGQGKKNIY---LANNKITMLRDLDEGCRS 144
Query: 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNH 248
++ LD+ N+ + +LE L L N V +L L L +N
Sbjct: 145 RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI--YDVKGQVVFAKLKTLDLSSNK 202
Query: 249 FSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNL 308
+ + ++ + + + NN L I + NL + N ++
Sbjct: 203 LA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH-CGTLRDFFS 259
Query: 309 AILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYF 368
++ +++ + +V L +P + L ++
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 57/356 (16%), Positives = 116/356 (32%), Gaps = 58/356 (16%)
Query: 253 IKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312
I + + + ++++ L + S + N+ L +S N L L+
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 313 ILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRI 372
+L++S N L + +LS++ L L +N + + G ++ETL +N
Sbjct: 62 LLNLSSNVLY-ETLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANN------ 109
Query: 373 PHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432
I+ + + QG + + L++N++
Sbjct: 110 --NISR--------VSCSRGQG--------KKNI---YLANNKITMLRDLDEGCRS---- 144
Query: 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY-KG 491
+ +DL N ++ + S +E + N
Sbjct: 145 --------RVQYLDL-------KLNEIDTVNFAELAASS--DTLEHLNLQYNFIYDVKGQ 187
Query: 492 VILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 551
V+ + LDLSSNKL + E + ++L +N L I ++ + +E DL
Sbjct: 188 VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLR 245
Query: 552 HNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPP 607
N + + + V+ + E+ T + G P
Sbjct: 246 GNGFH-CGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 5e-20
Identities = 46/272 (16%), Positives = 88/272 (32%), Gaps = 31/272 (11%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N LS I + +A T LE L L N L+ L +LS L L+
Sbjct: 41 LSGNPLSQISAADLAPFTKLELLNLSSNV----LYETLDLESLSTLRTLDLN-------- 88
Query: 61 KIENCLPTF----QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116
N + ++ L N N+ + K + L++NK+
Sbjct: 89 --NNYVQELLVGPSIETLHAANNNISRVSCSRGQ--GKKNIYLANNKIT-MLRDLDEGCR 143
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHGLIS---LDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
++++ L L N + L++ N + +V KL +++S
Sbjct: 144 SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKG--QVVFAKLKTLDLSS 200
Query: 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN- 232
N + G+ + + +NK + ++ + +LE L N F +
Sbjct: 201 NKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKA-LRFSQNLEHFDLRGNGFHCGTLRDF 257
Query: 233 YVNLTRLLFLYLDNNHFSGKIKDGLLRSSELM 264
+ R+ + + L
Sbjct: 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLG 289
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 85.0 bits (211), Expect = 4e-18
Identities = 34/191 (17%), Positives = 75/191 (39%), Gaps = 11/191 (5%)
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
N R + ++ + + + LD+S N LS + + F+ L +L++S
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
N+L + +L+ L+ LD++ N + L S+E L+ +N + + + +
Sbjct: 68 NVLYETLD--LESLSTLRTLDLNNNYVQ----ELLVGPSIETLHAANNNI-SRVSCSRGQ 120
Query: 355 GSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG-PIPHQLCQLRKLSIMDLSH 413
G + + L +N S ++ L L+ N + L ++L +
Sbjct: 121 G--KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 414 NRLNGSIPACI 424
N + + +
Sbjct: 179 NFIY-DVKGQV 188
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 42/236 (17%), Positives = 80/236 (33%), Gaps = 34/236 (14%)
Query: 347 SIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
+I G+ + + D+ + N++ L L GN L L KL
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 407 SIMDLSHNRLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLD 465
+++LS N L ++ ++ L +DL N +L
Sbjct: 61 ELLNLSSNVLYETLDLESLSTL---------------RTLDL-------NNNYVQEL--- 95
Query: 466 GIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525
+G +E N + L++NK+T + + L+
Sbjct: 96 -----LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150
Query: 526 LSHNFLSG-SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
L N + + E ++ +E L+L +N + + Q+ L D+S N L+
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA 204
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 1e-26
Identities = 71/368 (19%), Positives = 113/368 (30%), Gaps = 93/368 (25%)
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
K+ CL VL++ L +P+ L ++ L + N L T L +L
Sbjct: 33 KMRACLNN-GNAVLNVGESGLTTLPDCLPA--HITTLVIPDNNL-----TSLPALPPELR 84
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
L ++ N QLTS +
Sbjct: 85 TLEVSGN-----QLTS-------------------------------------------L 96
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLL 240
P + L + S L L + N P L
Sbjct: 97 PVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQL--TSLPV--LPPGLQ 144
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
L + +N + + SEL L NN L+ +P S L LS+S N L +
Sbjct: 145 ELSVSDNQLA-SLPALP---SELCKLWAYNNQLT-SLPM---LPSGLQELSVSDNQLA-S 195
Query: 301 IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
+P + L L + +L S ++ L + N L S+P S L+
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPAL------PSGLKELIVSGNRLT-SLPVLP---SELKE 245
Query: 361 LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420
L + N +P S L +L + N L +P L L + ++L N L+
Sbjct: 246 LMVSGN-RLTSLPMLP---SGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLS-ER 299
Query: 421 PACITNLL 428
+
Sbjct: 300 TLQALREI 307
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 91.1 bits (226), Expect = 3e-19
Identities = 74/406 (18%), Positives = 124/406 (30%), Gaps = 64/406 (15%)
Query: 1 MSSNQLSGILPSVIANLTS-----------------LEYLALYDNKFKGRLFSF-CSLAN 42
+ + L+ + + A++T+ L L + N +L S
Sbjct: 47 VGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGN----QLTSLPVLPPG 102
Query: 43 LSKLEVFQLSMEADLLQVKIENCLPTF--QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLS 100
L +L +F + LP L L + L +P L+ L +S
Sbjct: 103 LLELSIFSNPL----------THLPALPSGLCKLWIFGNQLTSLPVLP---PGLQELSVS 149
Query: 101 HNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMG 160
N+L L ++L L+ NN + L GL L +S N LP
Sbjct: 150 DNQL-----ASLPALPSELCKLWAYNNQLT--SLPMLPSGLQELSVSDNQLA-SLPTLPS 201
Query: 161 IVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL 220
L KL N S +P+ GL+ L VS N+ L P L+ L +
Sbjct: 202 E-LYKLWAYNNRLTS----LPALPS---GLKELIVSGNRL-TSLPVLPS----ELKELMV 248
Query: 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSW 280
S N P + LL L + N + ++ + L+ S +++ N LS
Sbjct: 249 SGNRL--TSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQA 303
Query: 281 MGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQ 340
+ ++ S + L ++ + +
Sbjct: 304 LREITSAPGYSGP-IIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQE 362
Query: 341 SNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALL 386
NA S+ + D Q+ E LRA
Sbjct: 363 DNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALRANT 408
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 88.8 bits (220), Expect = 1e-18
Identities = 68/368 (18%), Positives = 121/368 (32%), Gaps = 48/368 (13%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
S NQL+ LP + L L + + L KL +F +
Sbjct: 89 SGNQLT-SLPVLPPGLLELSIFSNPLTHLPA------LPSGLCKLWIFGNQLT------S 135
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+ P L+ LS+ + L +P L L +N+L T L + L+
Sbjct: 136 LPVLPP--GLQELSVSDNQLASLPALP---SELCKLWAYNNQL-----TSLPMLPSGLQE 185
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
L +++N + L + L L +N T LP L + +S N ++P
Sbjct: 186 LSVSDNQLA--SLPTLPSELYKLWAYNNRLT-SLPALPS----GLKELIVSGNRLT-SLP 237
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV-NLTRLL 240
+ L+ L VS N+ L+ P+ L L + N P + +L+
Sbjct: 238 VLPSE---LKELMVSGNR----LTSLPMLPS-GLLSLSVYRNQL--TRLPESLIHLSSET 287
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
+ L+ N S + L + S L++ + + L
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA--DWLVPA 345
Query: 301 IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
+ + E+N + LS E+ +++ I + + + E
Sbjct: 346 REGEPAPADRWHMFG-QEDNADAFSLFLDRLSETEN-FIKDAGFKAQISSWLAQ--LAED 401
Query: 361 LDLRDNYF 368
LR N F
Sbjct: 402 EALRANTF 409
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 78.0 bits (192), Expect = 4e-15
Identities = 54/250 (21%), Positives = 88/250 (35%), Gaps = 54/250 (21%)
Query: 331 LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
+ L + + L ++P+ + + + TL + DN +P LR L + GN
Sbjct: 39 NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDN-NLTSLPALP---PELRTLEVSGN 91
Query: 391 YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVA 450
L +P L +LSI L PA + L L + +
Sbjct: 92 QLTS-LPVLPPGLLELSIFSNPLTHL----PALPSGL-------CKLW-----IFGNQLT 134
Query: 451 DIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD 510
+ +LS+ SL + + K L +N+LT
Sbjct: 135 SLPVLPPGLQELSVSDNQLASL--PALPSELCK----------------LWAYNNQLT-S 175
Query: 511 IPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 570
+P LQ L++S N L+ S+P S L L +N+L +P + L L
Sbjct: 176 LPMLPSGLQE---LSVSDNQLA-SLPTLPSEL---YKLWAYNNRLT-SLPALPSGLKEL- 226
Query: 571 KFDVSYNDLS 580
VS N L+
Sbjct: 227 --IVSGNRLT 234
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 1e-09
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L +S N+LT +P +L+ L +S N L+ S+P S L SL + N+L ++
Sbjct: 226 LIVSGNRLT-SLPVLPSELKE---LMVSGNRLT-SLPMLPSGL---LSLSVYRNQLT-RL 276
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQ 588
P L L S + ++ N LS +
Sbjct: 277 PESLIHLSSETTVNLEGNPLSERTLQALR 305
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 9e-08
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 12/81 (14%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L +S N+L +P+ +L L +N L+ S+P S LK L +S N+L +
Sbjct: 186 LSVSDNQLA-SLPTLPSELYK---LWAYNNRLT-SLPALPSGLK---ELIVSGNRLT-SL 236
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P +EL L VS N L+
Sbjct: 237 PVLPSELKEL---MVSGNRLT 254
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 1e-04
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 514 EICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573
C LN+ + L+ ++P+ I +L + N L +P EL +L +
Sbjct: 35 RACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPPELRTL---E 87
Query: 574 VSYNDLS 580
VS N L+
Sbjct: 88 VSGNQLT 94
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 7e-04
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L + N+LT +P + L + +NL N LS ++ + + +
Sbjct: 266 LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324
Query: 560 PPQLTELHSL 569
E +L
Sbjct: 325 ASAPRETRAL 334
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-25
Identities = 80/404 (19%), Positives = 151/404 (37%), Gaps = 49/404 (12%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFS--FCSLANLSKLEVF--QL-SMEA 55
+S N ++ + + + L L++L + + + F L++L L++ Q +E
Sbjct: 37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET 96
Query: 56 DLLQVKIENCLPTFQLKVLSLPNCNL--GVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWL 112
L+VL+L CNL V+ +L+ L L N + P
Sbjct: 97 GAFN-------GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF 149
Query: 113 LENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNIS 172
N + VL LT N ++ S + + +L + +
Sbjct: 150 FLNMRRFHVLDLTFN-----KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEK 204
Query: 173 KNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN 232
+ K + LD+S N F +++ + L +N
Sbjct: 205 CGNPF--------KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG--- 253
Query: 233 YVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM-GNFSNLYILS 291
+ F DN F G L +S + D+S + + + + +F++L L+
Sbjct: 254 -SSFGHTNFKDPDNFTFKG------LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLT 305
Query: 292 MSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQSNALGGSI 348
+++N + I F L L L++S+N L S+ S + NL +E L L N + ++
Sbjct: 306 LAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RAL 362
Query: 349 PNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGN 390
+ F G L+ L L N +P I + ++L+ + L N
Sbjct: 363 GDQSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 99.4 bits (248), Expect = 3e-22
Identities = 76/365 (20%), Positives = 139/365 (38%), Gaps = 41/365 (11%)
Query: 242 LYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNF---SNLYILSMSKNLL 297
+ L N + ++ + +L L + I + F S+L IL + N
Sbjct: 35 VDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRN--NTFRGLSSLIILKLDYNQF 91
Query: 298 EGNIPVQ-FNNLAILQILDISENNLSGSMIST---LNLSSVEHLYLQSNALGGSIPNTIF 353
+ FN LA L++L +++ NL G+++S L+S+E L L+ N + P + F
Sbjct: 92 L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150
Query: 354 RG-SALETLDLRDN----------YFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402
LDL N F + S++ + +L +
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFK 210
Query: 403 LRKLSIMDLSHNRLNGSIPACITNLLFW-KVGSRYLSGFVMVVMDLGVADIRNYYNSTVQ 461
++ +DLS N S+ + + K+ S LS + G +
Sbjct: 211 NTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----HTNFKDPDN 266
Query: 462 LSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG---LDLSSNKLTGDIPSEICD- 517
+ G++ + +++ K++ + + + L L+ N++ I
Sbjct: 267 FTFKGLEASGV-KTCDLS---KSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWG 321
Query: 518 LQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSKFDVS 575
L ++ LNLS NFL SI F NL +E LDLS+N + + Q L +L + +
Sbjct: 322 LTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALD 379
Query: 576 YNDLS 580
N L
Sbjct: 380 TNQLK 384
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 1e-19
Identities = 74/393 (18%), Positives = 139/393 (35%), Gaps = 59/393 (15%)
Query: 66 LPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL 124
LP + + L ++ + + +L++L + + L +L L
Sbjct: 28 LPA-HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86
Query: 125 TNNSFSGFQLTSAQHG-------LISLDISSNNFTG-KLPQNMGIVLPKLDCMNISKNSF 176
N Q + G L L ++ N G L N L L+ + + N+
Sbjct: 87 DYN-----QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNI 141
Query: 177 EGNIPSSI-GKMQGLRLLDVSSNKF----AGELSQSPVTNCFSLEW-----LQLSNNNFD 226
+ P+S M+ +LD++ NK +L + L ++
Sbjct: 142 KKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201
Query: 227 GQIFPNYVNLTRLLFLYLDNNHFSGKIK---DGLLRSSELMVLDISNNHLSG-------- 275
+ N T + L L N F + + +++ L +SN++ G
Sbjct: 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261
Query: 276 -HIPSWM---GNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL- 329
++ S + +SK+ + + F++ L+ L +++N I+ +
Sbjct: 262 KDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNE-----INKID 315
Query: 330 -----NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNL 382
L+ + L L N L GSI + +F LE LDL N+ + Q NL
Sbjct: 316 DNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNH-IRALGDQSFLGLPNL 373
Query: 383 RALLLRGNYLQGPIPHQ-LCQLRKLSIMDLSHN 414
+ L L N L+ +P +L L + L N
Sbjct: 374 KELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 405
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 64.4 bits (157), Expect = 6e-11
Identities = 54/253 (21%), Positives = 85/253 (33%), Gaps = 44/253 (17%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRL-FSFCSLANLSKLEVFQLSMEADLLQ 59
M+ L TS+ L L N FK + F +K++ LS ++
Sbjct: 195 MNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS 254
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
N L +K DLS +K+ + + T L
Sbjct: 255 SFGHTNF-------KDPDNFTF-----KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDL 301
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
E L L N ++ I N F G L L +N+S+N G+
Sbjct: 302 EQLTLAQN-----EINK---------IDDNAFWG---------LTHLLKLNLSQNFL-GS 337
Query: 180 IPSSI-GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN--YVNL 236
I S + + L +LD+S N L +L+ L L N + P+ + L
Sbjct: 338 IDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQL--KSVPDGIFDRL 394
Query: 237 TRLLFLYLDNNHF 249
T L ++L N +
Sbjct: 395 TSLQKIWLHTNPW 407
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 54/292 (18%), Positives = 111/292 (38%), Gaps = 30/292 (10%)
Query: 140 GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK 199
LD+ +N T ++ L L + + N P + + L L +S N+
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 200 FAGELSQSPVTNCF-SLEWLQLSNNNFDGQIFPNYV--NLTRLLFLYLDNNHF-SGKIKD 255
L + P +L+ L++ N V L +++ + L N S I++
Sbjct: 112 ----LKELP-EKMPKTLQELRVHENEI--TKVRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 256 GLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQI 313
G + +L + I++ +++ IP G +L L + N + + L L
Sbjct: 165 GAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKIT-KVDAASLKGLNNLAK 220
Query: 314 LDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYF---- 368
L +S N++S +L N + L+L +N L +P + ++ + L +N
Sbjct: 221 LGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIG 279
Query: 369 ---FGRIPHQINEHSNLRALLLRGNYLQ-GPIPHQLCQ-LRKLSIMDLSHNR 415
F P + ++ + L N +Q I + + + + L + +
Sbjct: 280 SNDF-CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 95.8 bits (239), Expect = 1e-21
Identities = 51/245 (20%), Positives = 96/245 (39%), Gaps = 21/245 (8%)
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF---DGQIFPNYVNL 236
+P + LLD+ +NK E+ N +L L L NN F L
Sbjct: 46 VPKDLPP--DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAF---APL 99
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
+L LYL N ++ + + ++ L L + N ++ S + + ++ + N
Sbjct: 100 VKLERLYLSKNQLK-ELPEKMPKT--LQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156
Query: 297 L-EGNIPVQ-FNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
L I F + L + I++ N++ I S+ L+L N + + +
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKIT-KVDAASLK 213
Query: 355 G-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412
G + L L L N + + + +LR L L N L +P L + + ++ L
Sbjct: 214 GLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLH 271
Query: 413 HNRLN 417
+N ++
Sbjct: 272 NNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 64/347 (18%), Positives = 113/347 (32%), Gaps = 83/347 (23%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
+N+++ I NL +L L L +NK +SK+ +
Sbjct: 60 QNNKITEIKDGDFKNLKNLHTLILINNK-------------ISKISPGAFA--------- 97
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
P +L+ L L L +P + L+ L + N++ + ++ V
Sbjct: 98 -----PLVKLERLYLSKNQLKELPEKMPK--TLQELRVHENEIT-KVRKSVFNGLNQMIV 149
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
+ L N L S I + F G + KL + I+ + IP
Sbjct: 150 VELGTNP------------LKSSGIENGAFQG---------MKKLSYIRIADTNIT-TIP 187
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN---FDGQIFPNYVNLTR 238
+ L L + NK ++ + + +L L LS N+ D N
Sbjct: 188 QGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSL---ANTPH 241
Query: 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298
L L+L+NN K+ GL + V+ + NN++S I S +F
Sbjct: 242 LRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGS--NDFCP------------ 285
Query: 299 GNIPVQFNNLAILQILDISENNLSGSMIST---LNLSSVEHLYLQSN 342
P A + + N + I + + L +
Sbjct: 286 ---PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 2e-17
Identities = 62/355 (17%), Positives = 111/355 (31%), Gaps = 91/355 (25%)
Query: 214 SLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNN 271
L L NN +I + NL L L L NN S KI G +L L +S N
Sbjct: 53 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKN 110
Query: 272 HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST--- 328
L +P L L + +N + FN L + ++++ N L S I
Sbjct: 111 QLK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 329 LNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388
+ + ++ + + +IP + +L L L N +I + +
Sbjct: 168 QGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGN--------KITK--------VD 208
Query: 389 GNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGS-RYLSGFVMVVMDL 447
L+G L L+ + LS N + + + N R L
Sbjct: 209 AASLKG--------LNNLAKLGLSFNSI-----SAVDNGSLANTPHLRELH--------- 246
Query: 448 GVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKL 507
++ L +V Y+ + L +N +
Sbjct: 247 -------------------LNNNKL-VKVPGGL-----------ADHKYIQVVYLHNNNI 275
Query: 508 TG------DIPSEICDLQNIHGLNLSHNFLSGSI--PESFSNLKMIESLDLSHNK 554
+ P + G++L N + P +F + + ++ L + K
Sbjct: 276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 2e-15
Identities = 45/306 (14%), Positives = 91/306 (29%), Gaps = 70/306 (22%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ +N++S I P A L LE L L N+ K
Sbjct: 83 LINNKISKISPGAFAPLVKLERLYLSKNQLK----------------------------- 113
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKL-AGNFPTWLLENNTK 118
++ +P L+ L + + + + + + ++L N L + + K
Sbjct: 114 ELPEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 172
Query: 119 LEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
L + + + + + L L + N T + S +G
Sbjct: 173 LSYIRIADTNITTIP-QGLPPSLTELHLDGNKIT-----------------KVDAASLKG 214
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR 238
+ L L +S N + + + N L L L+NN ++ +
Sbjct: 215 --------LNNLAKLGLSFNSIS-AVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264
Query: 239 LLFLYLDNNHFSGKIKDGLLRS-------SELMVLDISNNHLSGHI--PSWMGNFSNLYI 289
+ +YL NN+ S I + + + +N + PS
Sbjct: 265 IQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323
Query: 290 LSMSKN 295
+ +
Sbjct: 324 VQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 52/253 (20%), Positives = 95/253 (37%), Gaps = 32/253 (12%)
Query: 332 SSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
L LQ+N + I + F+ L TL L +N P L L L N
Sbjct: 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 391 YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVA 450
L+ +P ++ + L + + N + + +F + M+V++LG
Sbjct: 111 QLKE-LPEKM--PKTLQELRVHENEIT-----KVRKSVFNGLNQ-------MIVVELG-- 153
Query: 451 DIRNYYNSTVQLSLDGIDGRSLG--TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT 508
N L GI+ + ++ + + + + L L NK+T
Sbjct: 154 -----TN---PLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT 205
Query: 509 GDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH 567
+ + L N+ L LS N +S S +N + L L++NKL ++P L +
Sbjct: 206 -KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263
Query: 568 SLSKFDVSYNDLS 580
+ + N++S
Sbjct: 264 YIQVVYLHNNNIS 276
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 6e-10
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 16/164 (9%)
Query: 265 VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGS 324
V+ S+ L +P + +L + N + F NL L L + N + S
Sbjct: 35 VVQCSDLGLE-KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI--S 89
Query: 325 MIST---LNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQI-NEHS 380
IS L +E LYL N L +P + + L+ L + +N ++ + N +
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQL-KELPEKMPKT--LQELRVHENEIT-KVRKSVFNGLN 145
Query: 381 NLRALLLRGNYLQ-GPIPHQLCQ-LRKLSIMDLSHNRLNGSIPA 422
+ + L N L+ I + Q ++KLS + ++ + +IP
Sbjct: 146 QMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ 188
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ S L +P ++ + L+L +N ++ F NLK + +L L +NK++ +I
Sbjct: 36 VQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KI 91
Query: 560 PPQ-LTELHSLSKFDVSYNDLS 580
P L L + +S N L
Sbjct: 92 SPGAFAPLVKLERLYLSKNQLK 113
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 4e-05
Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPES-------FSNLKMIESLDLSH 552
L L++NKL +P + D + I + L +N +S +I + + + L
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSNDFCPPGYNTKKASYSGVSLFS 302
Query: 553 NKLN-GQIPPQL-TELHSLSKFDVSYN 577
N + +I P ++ + +
Sbjct: 303 NPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 1e-23
Identities = 82/449 (18%), Positives = 155/449 (34%), Gaps = 38/449 (8%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVFQLSMEADLL- 58
+S N +S + S I +L+ L L + N+ + + F L L DL
Sbjct: 28 ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYL---------DLSH 78
Query: 59 -QVKIENCLPTFQLKVLSLPNCNLGVIP--NFLLHQFNLKYLDLSHNKLAGNFPTWLLEN 115
++ +C PT LK L L +P + LK+L LS L + +
Sbjct: 79 NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHL 138
Query: 116 NTKLEVLYLTNNSFSGFQLTSAQH-GLISLDI--SSNNFTGKLPQNMGIVLPKLDCMNIS 172
N +L L Q SL I +N + + L+ NI
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198
Query: 173 KNSFEG------NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF--SLEWLQLSNNN 224
+ +I + + L L +++ + + + ++ + +SN
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258
Query: 225 FDGQIFPN-----YVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS 279
GQ+ +L L + ++ F S + + + + +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318
Query: 280 WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS---GSMISTLNLSSVEH 336
S L S NLL + +L L+ L + N L T + S++
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378
Query: 337 LYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP 395
L + N++ +L +L++ N I + ++ L L N ++
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKS- 435
Query: 396 IPHQLCQLRKLSIMDLSHNRLNGSIPACI 424
IP Q+ +L L ++++ N+L S+P I
Sbjct: 436 IPKQVVKLEALQELNVASNQLK-SVPDGI 463
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 96.1 bits (239), Expect = 5e-21
Identities = 69/401 (17%), Positives = 144/401 (35%), Gaps = 30/401 (7%)
Query: 1 MSSNQLSGI-LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQ 59
+S N + + N++ L++L L + S +A+L+ +V + E +
Sbjct: 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEK 154
Query: 60 VKIEN--CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117
E T L ++ N +F+L +L + +
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEF----HFILDVSVKTVANLELSNIKCVLEDNKCSYFL 210
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG--KLPQNMGIVLPKLDCMNISKNS 175
+ TN S L + ++ + N+F +L + + + + +
Sbjct: 211 SILAKLQTNPKLSNLTLNN-------IETTWNSFIRILQLVWHTTVWYFSISNVKLQGQL 263
Query: 176 FEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFS-LEWLQLSNNNFDGQIFPNYV 234
+ S ++ L + V S+ F QS + FS + + +
Sbjct: 264 DFRDFDYSGTSLKALSIHQVVSDVFG--FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS 321
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNF---SNLYILS 291
++ L L NN + + + +EL L + N L + +L L
Sbjct: 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD 380
Query: 292 MSKNLLEGNIP-VQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPN 350
+S+N + + + L L++S N L+ ++ L ++ L L SN + SIP
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-PPRIKVLDLHSNKIK-SIPK 438
Query: 351 TIFRGSALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGN 390
+ + AL+ L++ N +P I + ++L+ + L N
Sbjct: 439 QVVKLEALQELNVASN-QLKSVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 87/508 (17%), Positives = 160/508 (31%), Gaps = 92/508 (18%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
L++S N ++ L + L L IS N
Sbjct: 22 KTTILNISQNYIS-----------------ELWTSDILSLS------KLRILIISHNRIQ 58
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
L ++ +L+ +++S N I L+ LD+S N F N
Sbjct: 59 -YLDISVFKFNQELEYLDLSHNKLV-KISC--HPTVNLKHLDLSFNAFDALPICKEFGNM 114
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI---S 269
L++L LS + + +L L + + K L+ L I +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174
Query: 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN---------- 319
N + + +NL + ++ L + + LA LQ N
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234
Query: 320 NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGS-----ALETLDLRDNYFFGRIPH 374
N ++ + ++V + + + L G + F S AL + + F +
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294
Query: 375 QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGS 434
SN+ + + ++ +D S+N L ++ +L
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL------- 347
Query: 435 RYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEV-NFMTKNRYESYKGVI 493
L L + L E+ M +
Sbjct: 348 ----------------------TELETLILQMNQLKELSKIAEMTTQMKSLQQ------- 378
Query: 494 LDYMAGLDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552
LD+S N ++ D C +++ LN+S N L+ +I I+ LDL
Sbjct: 379 ------LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHS 430
Query: 553 NKLNGQIPPQLTELHSLSKFDVSYNDLS 580
NK+ IP Q+ +L +L + +V+ N L
Sbjct: 431 NKIK-SIPKQVVKLEALQELNVASNQLK 457
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 4e-15
Identities = 72/465 (15%), Positives = 161/465 (34%), Gaps = 36/465 (7%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
L+ L +SHN++ + + N +LE L L++N + L LD+S N F
Sbjct: 46 KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN-LKHLDLSFNAFD 103
Query: 153 GKLPQNMGIV-LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTN 211
LP + +L + +S E + I + ++L V + + + +
Sbjct: 104 -ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD 162
Query: 212 CFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNN 271
L + F ++++ L+ ++ ++D ++ + N
Sbjct: 163 ---FNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 272 HLSGHIPSWMGNFSNLYILSMSKNLLEGNIP-VQFNNLAILQILDISENNLSGSMISTLN 330
++ + + + + + + +N+ + LD + + SG+ + L+
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279
Query: 331 LSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNLRALLLRG 389
+ V + I+ S + + + ++ S L
Sbjct: 280 IHQVVSDVFGFP------QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSN 333
Query: 390 NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGV 449
N L + L +L + L N+L + + ++ S L + +
Sbjct: 334 NLLTDTVFENCGHLTELETLILQMNQLK-ELSK--IAEMTTQMKS--LQQLDISQNSVSY 388
Query: 450 ADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG 509
+ + + T L + L + + + LDL SNK+
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKV-------------LDLHSNKIK- 434
Query: 510 DIPSEICDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHN 553
IP ++ L+ + LN++ N L S+P+ F L ++ + L N
Sbjct: 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTN 478
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 54/347 (15%), Positives = 110/347 (31%), Gaps = 9/347 (2%)
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
+ L + N+ S ++ + S S+L +L IS+N + S L L +S N
Sbjct: 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIF 353
L + + L+ LD+S N I N+S ++ L L + L S I
Sbjct: 80 KLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136
Query: 354 RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
+ + L + + + L + H + + ++ +L
Sbjct: 137 HLNISKVLLVLGETY--GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL 194
Query: 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473
+ + + + + + + + + N + +QL
Sbjct: 195 SNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSI 254
Query: 474 TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSG 533
+ V++ R Y G L ++ + S+ N++ N + +
Sbjct: 255 SNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314
Query: 534 SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
S + LD S+N L + L L + N L
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 7e-13
Identities = 55/330 (16%), Positives = 110/330 (33%), Gaps = 33/330 (10%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
++ + IL + + +LE + + F S L +++
Sbjct: 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS----------------ILAKLQ 217
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLE-NNTKLE 120
L L + + I + H + Y +S+ KL G + + T L+
Sbjct: 218 TNPKLSNLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLK 276
Query: 121 VLYLTNNSFSGFQL--TSAQHGLISLDIS--SNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
L + F + +++I + + T + + ++ S N
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF----SLEWLQLSNNNFDGQIFPN 232
+ + G + L L + N+ S + SL+ L +S N+
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLK---ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393
Query: 233 Y-VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291
LL L + +N + I L + VLD+ +N + IP + L L+
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCLPPR--IKVLDLHSNKIK-SIPKQVVKLEALQELN 450
Query: 292 MSKNLLEGNIPVQFNNLAILQILDISENNL 321
++ N L+ F+ L LQ + + N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 5e-12
Identities = 54/265 (20%), Positives = 99/265 (37%), Gaps = 32/265 (12%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRL-FSFCSLANLSKLEVFQLSMEADLLQ 59
+ N IL V T++ Y ++ + K +G+L F + S + + +D+
Sbjct: 232 TTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289
Query: 60 VKIENCLPTF-QLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKL----AGNFPTWLL 113
F + + + ++ + +LD S+N L N
Sbjct: 290 FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHL-- 347
Query: 114 ENNTKLEVLYLTNNSFS----GFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCM 169
T+LE L L N ++T+ L LDIS N+ + + L +
Sbjct: 348 ---TELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSL 404
Query: 170 NISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQ---LSNNNFD 226
N+S N I + +++LD+ SNK +S LE LQ +++N
Sbjct: 405 NMSSNILTDTIFRCL--PPRIKVLDLHSNKI-----KSIPKQVVKLEALQELNVASNQL- 456
Query: 227 GQIFPN--YVNLTRLLFLYLDNNHF 249
+ P+ + LT L ++L N +
Sbjct: 457 -KSVPDGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 57.6 bits (139), Expect = 7e-09
Identities = 36/228 (15%), Positives = 73/228 (32%), Gaps = 33/228 (14%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
S+ + +++ + + + + +S S L
Sbjct: 284 VSDVFGFPQSYIYEIFSNMNIKNFTVSGTR--MVHMLCPSKISPFLHLDFS-NNLLTDTV 340
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNF---LLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
ENC +L+ L L L + +L+ LD+S N ++ +
Sbjct: 341 FENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400
Query: 119 LEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
L L +++N + + LD+ SN
Sbjct: 401 LLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-------------------------- 434
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
+IP + K++ L+ L+V+SN+ + SL+ + L N +D
Sbjct: 435 SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 4/91 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L++S N ++ S+I L + L +SHN + F + +E LDLSHNKL I
Sbjct: 26 LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-I 84
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590
+L D+S+N +P ++F
Sbjct: 85 SCH--PTVNLKHLDLSFNAFDA-LPICKEFG 112
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 9e-06
Identities = 58/367 (15%), Positives = 111/367 (30%), Gaps = 65/367 (17%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
S + +L+IS N++S S + + S L IL +S N ++ F L+ LD+S N
Sbjct: 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79
Query: 320 NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINE 378
L IS +++HL L NA F S L+ L L + I
Sbjct: 80 KLVK--ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137
Query: 379 HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438
+ + LL+ G L + + +L
Sbjct: 138 LNISKVLLVLGETYGEKED-----PEGLQDFNTESLHIVFPTNKEFHFILDV-------- 184
Query: 439 GFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA 498
++ ++ ++ +E N + K ++
Sbjct: 185 ---------------------SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223
Query: 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L L++ + T + I LQ + + + +S+ KL GQ
Sbjct: 224 NLTLNNIETTWNSFIRI--LQLVWHTTVWY-------------------FSISNVKLQGQ 262
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESS-------YRGNLHLCGPPINKS 611
+ + + S +S + + + Q ++ S +
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322
Query: 612 CTNLLEL 618
+ L L
Sbjct: 323 ISPFLHL 329
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 98.9 bits (247), Expect = 1e-22
Identities = 51/311 (16%), Positives = 103/311 (33%), Gaps = 51/311 (16%)
Query: 71 LKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
+L L N ++ + +L L L +NK++ KL+ LY++ N
Sbjct: 56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN-- 112
Query: 130 SGFQLTSAQHG----LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG 185
L L+ L I N + K F G
Sbjct: 113 ---HLVEIPPNLPSSLVELRIHDNRIR-----------------KVPKGVFSG------- 145
Query: 186 KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245
++ + +++ N + + L +L++S I + L L+LD
Sbjct: 146 -LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKD--LPETLNELHLD 201
Query: 246 NNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ 304
+N I+ L S+L L + +N + + L L + N L +P
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAG 259
Query: 305 FNNLAILQILDISENNLS-------GSMISTLNLSSVEHLYLQSNALG-GSIPNTIFRG- 355
+L +LQ++ + NN++ + + + + L +N + + FR
Sbjct: 260 LPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319
Query: 356 SALETLDLRDN 366
+ + +
Sbjct: 320 TDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 50/291 (17%), Positives = 103/291 (35%), Gaps = 29/291 (9%)
Query: 140 GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK 199
LD+ +N+ + +L ++ L L + + N + ++ L+ L +S N
Sbjct: 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 200 FAGELSQSPVTNCF-SLEWLQLSNNNFDGQIFPNYV--NLTRLLFLYLDNNHF-SGKIKD 255
L + P N SL L++ +N + P V L + + + N + +
Sbjct: 114 ----LVEIP-PNLPSSLVELRIHDNRI--RKVPKGVFSGLRNMNCIEMGGNPLENSGFEP 166
Query: 256 GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQIL 314
G +L L IS L+ IP L L + N ++ I ++ + L L
Sbjct: 167 GAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRL 222
Query: 315 DISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP 373
+ N + +L L ++ L+L +N L +P + L+ + L N ++
Sbjct: 223 GLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTN-NITKVG 280
Query: 374 -------HQINEHSNLRALLLRGNYLQGPI--PHQLCQLRKLSIMDLSHNR 415
+ + + L N + P + + + +
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 5e-17
Identities = 66/352 (18%), Positives = 114/352 (32%), Gaps = 86/352 (24%)
Query: 214 SLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNN 271
L L NN+ ++ + + L L L L NN S KI + +L L IS N
Sbjct: 55 DTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKN 112
Query: 272 HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNL 331
HL IP S+L L + N +I + + SG L
Sbjct: 113 HLV-EIPP--NLPSSLVELRIHDN----------------RIRKVPKGVFSG-------L 146
Query: 332 SSVEHLYLQSNALG-GSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
++ + + N L F G L L + + IP + L L L N
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDL--PETLNELHLDHN 203
Query: 391 YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVA 450
+Q L + KL + L HN++ I N + + + + L
Sbjct: 204 KIQAIELEDLLRYSKLYRLGLGHNQI-----RMIENGSLSFLPT-------LRELHL--- 248
Query: 451 DIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD 510
N +L ++V L + + L +N +T
Sbjct: 249 ----DNN---KL-----------SRVPAGLPD-----------LKLLQVVYLHTNNITKV 279
Query: 511 IPSEICDLQ------NIHGLNLSHNFLSGSI--PESFSNLKMIESLDLSHNK 554
++ C + +G++L +N + P +F + ++ + K
Sbjct: 280 GVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 48/276 (17%), Positives = 88/276 (31%), Gaps = 59/276 (21%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFK---GRLFS-------------------FC 38
+ +N++S I + L L+ L + N L S F
Sbjct: 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFS 144
Query: 39 SLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLD 98
L N++ +E+ +E + + L +L L + L IP L L L
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDLPE--TLNELH 199
Query: 99 LSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQN 158
L HNK+ L +KL L L +N Q+ I + + +
Sbjct: 200 LDHNKIQ-AIELEDLLRYSKLYRLGLGHN-----QIRM---------IENGSLSF----- 239
Query: 159 MGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF----AGELSQ-SPVTNCF 213
LP L +++ N +P+ + ++ L+++ + +N +
Sbjct: 240 ----LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRA 294
Query: 214 SLEWLQLSNNNFDGQIFPNYV--NLTRLLFLYLDNN 247
+ L NN +T L + N
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 72.7 bits (179), Expect = 5e-14
Identities = 58/323 (17%), Positives = 103/323 (31%), Gaps = 83/323 (25%)
Query: 262 ELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
L V+ S+ L +P + + +L + N + F L L L + N +
Sbjct: 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90
Query: 322 SGSMIST---LNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINE 378
S I L ++ LY+ N L IP + L L + DN +I
Sbjct: 91 S--KIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDN--------RI-- 135
Query: 379 HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438
+ + G LR ++ +++ N L S F + YL
Sbjct: 136 -RKVPKGVFSG-------------LRNMNCIEMGGNPLENS---GFEPGAFDGLKLNYLR 178
Query: 439 GFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA 498
+++ + + + +
Sbjct: 179 ------------------------------------------ISEAKLTGIPKDLPETLN 196
Query: 499 GLDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557
L L NK+ I E ++ L L HN + S S L + L L +NKL+
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254
Query: 558 QIPPQLTELHSLSKFDVSYNDLS 580
++P L +L L + N+++
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT 277
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 99.2 bits (247), Expect = 7e-22
Identities = 81/451 (17%), Positives = 151/451 (33%), Gaps = 61/451 (13%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLE--VFQLSMEADLL 58
+S N +S + I+ L+ L L L N+ + L+ VF
Sbjct: 59 LSQNSISELRMPDISFLSELRVLRLSHNR-------------IRSLDFHVF------LFN 99
Query: 59 QVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
Q L+ L + + L I + +L++LDLS N N TK
Sbjct: 100 Q----------DLEYLDVSHNRLQNISCCPMA--SLRHLDLSFNDFDVLPVCKEFGNLTK 147
Query: 119 LEVLYLTNN--------SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIV-LPKLDCM 169
L L L+ + L+ L+S I N ++ L
Sbjct: 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207
Query: 170 NISKNSFEGNIPSSIGKMQGLRLLDVSSNKF---AGELSQSPVTNCFSLEWLQLSNNNFD 226
S ++ ++L D + + EL++ P +L+ ++ +
Sbjct: 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267
Query: 227 GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSE-----LMVLDISNNHLSGHIPSWM 281
+ + +L + N + +I SE LM+ + N +
Sbjct: 268 K--LFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALY 325
Query: 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQ 340
F+ + I +S + V + + L+ ++N + S+ L ++ L LQ
Sbjct: 326 SVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQ 385
Query: 341 SNALGGSIPNTIFRGSALETLDLRDNYF----FGRIPHQINEHSNLRALLLRGNYLQGPI 396
N L + + +L+ D ++ L L N L G +
Sbjct: 386 RNGL-KNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV 444
Query: 397 PHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427
L K+ ++DL +NR+ SIP +T+L
Sbjct: 445 FRCL--PPKVKVLDLHNNRIM-SIPKDVTHL 472
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 9e-16
Identities = 71/385 (18%), Positives = 126/385 (32%), Gaps = 48/385 (12%)
Query: 1 MSSNQLSGI-LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQ 59
+S N + + NLT L +L L KF+ +A+L L L + + ++
Sbjct: 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ--LDLLPVAHL-HLSCILLDLVSYHIK 184
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFN-LKYLDLSHNKLAGNF------PTWL 112
L VL L + + N L +L LS+ KL
Sbjct: 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSE 244
Query: 113 LENNTKLEVLYLTNNSFSGFQLTSAQH-----GLISLDISSNNFTGKL----PQNMGIVL 163
L L + L + + + L+I + T ++ L
Sbjct: 245 LTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL 304
Query: 164 PKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNN 223
L ++ F + + + + +S + + + S +L + N
Sbjct: 305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD-TPFIHMVCPPSPSSFTFLNFTQN 363
Query: 224 NFDGQIFPNYVNLTRLLFLYLDNNHFS--GKIKDGLLRSSELMVLDISNNHLSGHIP--- 278
F +F L RL L L N K+ S L LD+S N L+ H
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 279 -SWMGNFSNLY-------------------ILSMSKNLLEGNIPVQFNNLAILQILDISE 318
+W + L +L + N + +IP +L LQ L+++
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482
Query: 319 NNLSGSMISTL-NLSSVEHLYLQSN 342
N L L+S+++++L N
Sbjct: 483 NQLKSVPDGVFDRLTSLQYIWLHDN 507
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 78.8 bits (194), Expect = 2e-15
Identities = 75/485 (15%), Positives = 147/485 (30%), Gaps = 98/485 (20%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHG----LISLDISS 148
L+ L LSHN++ + + N LE L +++N +L + L LD+S
Sbjct: 77 ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN-----RLQNISCCPMASLRHLDLSF 130
Query: 149 NNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK-----FAGE 203
N+F VLP + G + L L +S+ K
Sbjct: 131 NDFD---------VLP---------------VCKEFGNLTKLTFLGLSAAKFRQLDLLPV 166
Query: 204 LSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSEL 263
L + + N T L ++ N+ FS ++ + L
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETE---SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 264 MVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG 323
+ +I N + S L N+ LQ ++ +
Sbjct: 224 QLSNIKLNDENCQRLMTF--LSELTRGPTLLNV-------------TLQHIETTWKCSV- 267
Query: 324 SMISTLNLSSVEHLYLQSNALGGSIPNTIFRGS-----ALETLDLRDNYFFGRIPHQINE 378
+ VE+L + + + I F S +L +++ F +
Sbjct: 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSV 327
Query: 379 HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438
+ + +L + + ++ + N S+ + L
Sbjct: 328 FAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL----------- 376
Query: 439 GFVMVVMDLGVADIRNYYNSTVQL-SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYM 497
++ L + + + S D
Sbjct: 377 -----------KRLQTLILQRNGLKNFFKVALMTKNMSSL--ETLDVSLNSLNSHAYDRT 423
Query: 498 AG-------LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 550
L+LSSN LTG + C + L+L +N + SIP+ ++L+ ++ L++
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFR--CLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNV 480
Query: 551 SHNKL 555
+ N+L
Sbjct: 481 ASNQL 485
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 70.3 bits (172), Expect = 9e-13
Identities = 56/356 (15%), Positives = 109/356 (30%), Gaps = 29/356 (8%)
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFS---NLYILSM 292
R L L N S +++ + SEL VL +S+N + + F +L L +
Sbjct: 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDF--HVFLFNQDLEYLDV 107
Query: 293 SKNLLEGNIPVQFNNLAILQILDISENNLS--GSMISTLNLSSVEHLYLQSNALGGSIPN 350
S N L+ NI +A L+ LD+S N+ NL+ + L L + +
Sbjct: 108 SHNRLQ-NIS--CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDL 163
Query: 351 TIFRGSALETLDLR-DNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409
L + L +Y + + N L L + + L +
Sbjct: 164 LPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHL 223
Query: 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLG----VADIRNYYNSTVQ-LSL 464
LS+ +LN + L L + ++ V + ++ V+ L++
Sbjct: 224 QLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNI 283
Query: 465 DGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGL 524
+ +Y L + + + + ++
Sbjct: 284 YNLTITERI---------DREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIK 334
Query: 525 NLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
LS + + L+ + N + + L L + N L
Sbjct: 335 MLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 9e-11
Identities = 83/462 (17%), Positives = 150/462 (32%), Gaps = 78/462 (16%)
Query: 143 SLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNKFA 201
+L +S N+ + +L L +L + +S N ++ + Q L LDVS N+
Sbjct: 56 ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR-- 111
Query: 202 GELSQSPVTNCFSLEWLQLSNNNFD----GQIFPNYVNLTRLLFLYLDNNHF-SGKIKDG 256
L SL L LS N+FD + F N LT+L FL L F +
Sbjct: 112 --LQNISCCPMASLRHLDLSFNDFDVLPVCKEFGN---LTKLTFLGLSAAKFRQLDLLPV 166
Query: 257 LLRSSELMVLDISNNHLSGHIPS--WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQIL 314
++LD+ + H+ G + N + L+++ +L + + N L LQ+
Sbjct: 167 AHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLS 226
Query: 315 DISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPN--------TIFRGSALETLDLRDN 366
+I N+ + + T L + L F +E L++ +
Sbjct: 227 NIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNL 286
Query: 367 YFFGRIPHQINEHSN-----LRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421
RI + +S L ++ +++I LS +
Sbjct: 287 TITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHM 346
Query: 422 ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFM 481
C + +L+ N G
Sbjct: 347 VCPPSP----SSFTFLN---------------FTQNVFTDSVFQGCST------------ 375
Query: 482 TKNRYESYKGVILDYMAGLDLSSNKLT--GDIPSEICDLQNIHGLNLSHNFL-SGSIPES 538
L + L L N L + ++ ++ L++S N L S + +
Sbjct: 376 ------------LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423
Query: 539 FSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
+ + I L+LS N L G + L + D+ N +
Sbjct: 424 CAWAESILVLNLSSNMLTGSVFRCLPP--KVKVLDLHNNRIM 463
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 5e-09
Identities = 34/152 (22%), Positives = 59/152 (38%), Gaps = 25/152 (16%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLS------ME 54
+ N + + + L L+ L L N K N+S LE +S
Sbjct: 360 FTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHA 419
Query: 55 ADLLQVKIEN-----------------CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYL 97
D E+ CLP ++KVL L N + IP + H L+ L
Sbjct: 420 YDRTCAWAESILVLNLSSNMLTGSVFRCLPP-KVKVLDLHNNRIMSIPKDVTHLQALQEL 478
Query: 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
+++ N+L + P + + T L+ ++L +N +
Sbjct: 479 NVASNQLK-SVPDGVFDRLTSLQYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 1e-08
Identities = 39/250 (15%), Positives = 92/250 (36%), Gaps = 26/250 (10%)
Query: 14 IANLTSLEYLALYDNKFKGRL-FSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTF-QL 71
+EYL +Y+ R+ + + + + ++ + E F ++
Sbjct: 272 FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM 331
Query: 72 KVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKL----AGNFPTWLLENNTKLEVLYLTN 126
+ L + I + +L+ + N T +L+ L L
Sbjct: 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTL-----KRLQTLILQR 386
Query: 127 NSFS-----GFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
N + L +LD+S N+ + +N+S N G++
Sbjct: 387 NGLKNFFKVALMTKNMSS-LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN--YVNLTRL 239
+ +++LD+ +N+ + + VT+ +L+ L +++N + P+ + LT L
Sbjct: 446 RCLP--PKVKVLDLHNNRIM-SIPKD-VTHLQALQELNVASNQL--KSVPDGVFDRLTSL 499
Query: 240 LFLYLDNNHF 249
+++L +N +
Sbjct: 500 QYIWLHDNPW 509
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNGQ 558
L LS N ++ +I L + L LSHN + S+ F + +E LD+SHN+L
Sbjct: 57 LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQN- 114
Query: 559 IPPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590
I + SL D+S+ND +P ++F
Sbjct: 115 ISCC--PMASLRHLDLSFNDFDV-LPVCKEFG 143
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 59/278 (21%), Positives = 103/278 (37%), Gaps = 32/278 (11%)
Query: 72 KVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG 131
+ + L +P + + L+L NKL + P + + T+L L L++N S
Sbjct: 10 TEIRCNSKGLTSVPTGIPS--SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS- 65
Query: 132 FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLR 191
S + G L +++S N + S+ ++ L
Sbjct: 66 -----------FKGCCSQSDFG---------TTSLKYLDLSFNGVI-TMSSNFLGLEQLE 104
Query: 192 LLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV--NLTRLLFLYLDNNHF 249
LD + S + +L +L +S+ + ++ N + L+ L L + N F
Sbjct: 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT--RVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 250 SGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNL 308
+ L LD+S L P+ + S+L +L+MS N + L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 309 AILQILDISENNLSGSMISTLN--LSSVEHLYLQSNAL 344
LQ+LD S N++ S L SS+ L L N
Sbjct: 223 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 2e-19
Identities = 49/210 (23%), Positives = 76/210 (36%), Gaps = 10/210 (4%)
Query: 214 SLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHFSGK-IKDGLLRS-SELMVLDISN 270
S L+L +N + + LT+L L L +N S K + L LD+S
Sbjct: 29 SATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL 329
N + + S L L + L+ F +L L LDIS + +
Sbjct: 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146
Query: 330 -NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALL 386
LSS+E L + N+ + IF L LDL ++ S+L+ L
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLN 205
Query: 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
+ N L L ++D S N +
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 82.0 bits (203), Expect = 4e-17
Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 19/236 (8%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ SN+L + V LT L L+L N + S + L+ LS
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS------FN 88
Query: 61 KIENCLPTF----QLKVLSLPNCNLGVIP--NFLLHQFNLKYLDLSHNKLAGNFPTWLLE 114
+ F QL+ L + NL + + L NL YLD+SH +
Sbjct: 89 GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFN 147
Query: 115 NNTKLEVLYLTNNSFSGFQLTSAQHGLIS---LDISSNNFTGKLPQNMGIVLPKLDCMNI 171
+ LEVL + NSF L L + LD+S +L L L +N+
Sbjct: 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNM 206
Query: 172 SKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF-SLEWLQLSNNNFD 226
S N+F + L++LD S N + + + SL +L L+ N+F
Sbjct: 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 2e-16
Identities = 48/195 (24%), Positives = 78/195 (40%), Gaps = 15/195 (7%)
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNF---SNLYILSM 292
+ L L++N + G+ ++L L +S+N LS + ++L L +
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS-FKGCCSQSDFGTTSLKYLDL 85
Query: 293 SKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST---LNLSSVEHLYLQSNALGGSIP 349
S N + + F L L+ LD +NL M L+L ++ +L +
Sbjct: 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAF 142
Query: 350 NTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLS 407
N IF G S+LE L + N F I NL L L L+ P L L
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 202
Query: 408 IMDLSHNRLNGSIPA 422
++++SHN S+
Sbjct: 203 VLNMSHNNFF-SLDT 216
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 3e-12
Identities = 29/161 (18%), Positives = 60/161 (37%), Gaps = 8/161 (4%)
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM 325
+ ++ L+ +P+ G S+ L + N L+ F+ L L L +S N LS
Sbjct: 12 IRCNSKGLT-SVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 326 IST---LNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQI-NEHSN 381
+ +S+++L L N + ++ + LE LD + + + N
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127
Query: 382 LRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
L L + + + L L ++ ++ N +
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 168
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 6/85 (7%)
Query: 500 LDLSSNKLT-GDIPSEICD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557
L LSSN L+ S+ ++ L+LS N + ++ +F L+ +E LD H+ L
Sbjct: 57 LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK- 114
Query: 558 QIPPQ--LTELHSLSKFDVSYNDLS 580
Q+ L +L D+S+
Sbjct: 115 QMSEFSVFLSLRNLIYLDISHTHTR 139
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 21/83 (25%), Positives = 35/83 (42%), Gaps = 2/83 (2%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
LD + L + L+N+ L++SH + F+ L +E L ++ N
Sbjct: 106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165
Query: 559 IPPQ-LTELHSLSKFDVSYNDLS 580
P TEL +L+ D+S L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLE 188
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ- 558
+ +S LT +P+ I + L L N L F L + L LS N L+ +
Sbjct: 12 IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68
Query: 559 -IPPQLTELHSLSKFDVSYNDLS 580
SL D+S+N +
Sbjct: 69 CCSQSDFGTTSLKYLDLSFNGVI 91
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 5/84 (5%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
LDLS +L + L ++ LN+SHN + L ++ LD S N +
Sbjct: 180 LDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237
Query: 559 IPPQLTE--LHSLSKFDVSYNDLS 580
Q + SL+ +++ ND +
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 3e-19
Identities = 62/429 (14%), Positives = 132/429 (30%), Gaps = 67/429 (15%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
++ ++ L +L L +++ + L+ L + ++ +
Sbjct: 26 AAFEMQATDTISEEQLATLTSLDCHNSSIT----DMTGIEKLTGLTKLICTSN-NITTLD 80
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+ L L+ + L + + L YL+ NKL + N L
Sbjct: 81 LSQNT---NLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDVS----QNPLLTY 131
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
L N+ + + S L LD N KL +L ++ S N
Sbjct: 132 LNCARNTLTEIDV-SHNTQLTELDCHLNKKITKLDVTP---QTQLTTLDCSFNKITE--- 184
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241
+ + + L L+ +N +++ + L +L S+N + LT+L +
Sbjct: 185 LDVSQNKLLNRLNCDTNN----ITKLDLNQNIQLTFLDCSSNKLTE---IDVTPLTQLTY 237
Query: 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
N + ++ L S+L L L I + + + L +
Sbjct: 238 FDCSVNPLT-ELDVSTL--SKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKEL 291
Query: 302 PVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETL 361
+ L +LD + + + + +LYL + L L
Sbjct: 292 D--VTHNTQLYLLDCQAAGI--TELDLSQNPKLVYLYLNNT--------------ELTEL 333
Query: 362 DLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421
D+ N + L++L ++Q + ++ L+ + +
Sbjct: 334 DVSHN-------------TKLKSLSCVNAHIQD-FS-SVGKIPALNNNFEAEGQTITMPK 378
Query: 422 ACITNLLFW 430
+TN
Sbjct: 379 ETLTNNSLT 387
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 2e-15
Identities = 47/329 (14%), Positives = 101/329 (30%), Gaps = 36/329 (10%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+N+L+ + ++ L YL N + +++ ++L + + ++
Sbjct: 113 CDTNKLTKL---DVSQNPLLTYLNCARNT-----LTEIDVSHNTQLTELDCHLNKKITKL 164
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+ QL L + + + L L+ N + L N +L
Sbjct: 165 DVTPQT---QLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNIT----KLDLNQNIQLT 215
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
L ++N + +T L D S N T +L + L L C+
Sbjct: 216 FLDCSSNKLTEIDVTPLTQ-LTYFDCSVNPLT-ELDVSTLSKLTTLHCIQTDLLEI---- 269
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLL 240
+ L + ++ + VT+ L L +L+
Sbjct: 270 --DLTHNTQLIYFQAEGCR---KIKELDVTHNTQLYLLDCQAAGITELDLS---QNPKLV 321
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
+LYL+N + ++ L L N H+ S +G L ++
Sbjct: 322 YLYLNNTELT-ELDVSHNTK--LKSLSCVNAHIQD-FSS-VGKIPALNNNFEAEGQTITM 376
Query: 301 IPVQFNNLAILQILDISENNLSGSMISTL 329
N ++ + + G+ ++
Sbjct: 377 PKETLTNNSLTIAVSPDLLDQFGNPMNIE 405
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 65.9 bits (161), Expect = 2e-11
Identities = 57/328 (17%), Positives = 104/328 (31%), Gaps = 46/328 (14%)
Query: 107 NFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT-----GKLPQ---- 157
+F W ++N EV + L SLD +++ T KL
Sbjct: 10 SFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKL 69
Query: 158 ---NMGIV------LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSP 208
+ I L + N N+ + + L L+ +NK L++
Sbjct: 70 ICTSNNITTLDLSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNK----LTKLD 122
Query: 209 VTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268
V+ L +L + N + + T+L L N K+ L LD
Sbjct: 123 VSQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLDVTPQTQ--LTTLDC 177
Query: 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST 328
S N ++ + + L L+ N + + N L LD S N L + I
Sbjct: 178 SFNKIT-ELD--VSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL--TEIDV 229
Query: 329 LNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388
L+ + + N L + + S L TL +I+ N + + +
Sbjct: 230 TPLTQLTYFDCSVNPL-TELDVSTL--SKLTTLHCIQTDL-----LEIDLTHNTQLIYFQ 281
Query: 389 GNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
+ + +L ++D +
Sbjct: 282 AEGCRKIKELDVTHNTQLYLLDCQAAGI 309
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 2e-07
Identities = 47/298 (15%), Positives = 90/298 (30%), Gaps = 49/298 (16%)
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSN 342
NF++ + + + LA L LD ++++ M L+ + L SN
Sbjct: 19 NFASEVAAAFEMQATD---TISEEQLATLTSLDCHNSSIT-DMTGIEKLTGLTKLICTSN 74
Query: 343 ALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402
+ ++ + + + L L N + + + L L N L Q
Sbjct: 75 NI-TTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPL 128
Query: 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQL 462
L L + + N L + T L + V + + +N +L
Sbjct: 129 LTYL---NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL 185
Query: 463 SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIH 522
+ + L+ +N +T + + +
Sbjct: 186 DVSQ---------------------------NKLLNRLNCDTNNIT-KLD--LNQNIQLT 215
Query: 523 GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580
L+ S N L+ I + L + D S N L L++L +L DL
Sbjct: 216 FLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLL 267
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 89.3 bits (221), Expect = 9e-19
Identities = 53/295 (17%), Positives = 93/295 (31%), Gaps = 33/295 (11%)
Query: 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI--GKMQGLRLLDVSSNK 199
+S + N + + K + + + S + + L ++
Sbjct: 13 LSQNSFYNTIS-GTYADYFSAWDKWEKQALPGENRN-EAVSLLKECLINQFSELQLNRLN 70
Query: 200 FAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLR 259
LS P + L+++ N P L +L +N S + +
Sbjct: 71 ----LSSLPDNLPPQITVLEITQNAL--ISLPE--LPASLEYLDACDNRLS-TLPELP-- 119
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ L LD+ NN L+ +P L ++ N L +P +L ++L + N
Sbjct: 120 -ASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELPTSL---EVLSVRNN 170
Query: 320 NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALET----LDLRDNYFFGRIPHQ 375
L+ + L S+E L + +N L S+P R E R+N IP
Sbjct: 171 QLTF--LPEL-PESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRI-THIPEN 225
Query: 376 INEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFW 430
I ++L N L I L Q + S T
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL 280
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 5e-16
Identities = 56/297 (18%), Positives = 97/297 (32%), Gaps = 43/297 (14%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
N +SG + E AL + S +++ QL+
Sbjct: 18 FYNTISGTYADYFSAWDKWEKQALPGEN-RNEAVSLLKECLINQFSELQLN--------- 67
Query: 62 IENCLPTF------QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLEN 115
L + Q+ VL + L +P +L+YLD N+L + L E
Sbjct: 68 -RLNLSSLPDNLPPQITVLEITQNALISLPELP---ASLEYLDACDNRL-----STLPEL 118
Query: 116 NTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNS 175
L+ L + NN + L L ++ +N T LP+ L+ +++ N
Sbjct: 119 PASLKHLDVDNNQLT--MLPELPALLEYINADNNQLT-MLPEL----PTSLEVLSVRNNQ 171
Query: 176 FEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLE----WLQLSNNNFDGQIFP 231
+P L LDVS+N L P E + + N I
Sbjct: 172 LTF-LPELPES---LEALDVSTNLLE-SLPAVP-VRNHHSEETEIFFRCRENRIT-HIPE 224
Query: 232 NYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288
N ++L + L++N S +I++ L + + + S L
Sbjct: 225 NILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLA 281
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 2e-15
Identities = 58/300 (19%), Positives = 108/300 (36%), Gaps = 36/300 (12%)
Query: 97 LDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSA-----QHGLISLDISSNNF 151
+ +N ++ K E L + + + S + L ++ N
Sbjct: 15 QNSFYNTIS-GTYADYFSAWDKWEKQALPGENRN--EAVSLLKECLINQFSELQLNRLNL 71
Query: 152 TGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTN 211
+ LP N+ P++ + I++N+ ++P L LD N+ + L + P
Sbjct: 72 S-SLPDNLP---PQITVLEITQNALI-SLPELPA---SLEYLDACDNRLS-TLPELPA-- 120
Query: 212 CFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNN 271
SL+ L + NN + P L ++ DNN + + + + L VL + NN
Sbjct: 121 --SLKHLDVDNNQL--TMLPE--LPALLEYINADNNQLT-MLPELP---TSLEVLSVRNN 170
Query: 272 HLSGHIPSWMGNFSNLYILSMSKNLLEG---NIPVQFNNLAILQILDISENNLSGSMIST 328
L+ +P + L L +S NLLE ++ EN ++ +
Sbjct: 171 QLT-FLPELPES---LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENI 226
Query: 329 LNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388
L+L + L+ N L I ++ + +A YF Q H L +
Sbjct: 227 LSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 57.7 bits (139), Expect = 9e-09
Identities = 21/81 (25%), Positives = 38/81 (46%), Gaps = 12/81 (14%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L+++ N L +P L+ L+ N LS ++PE ++LK LD+ +N+L +
Sbjct: 85 LEITQNALI-SLPELPASLEY---LDACDNRLS-TLPELPASLK---HLDVDNNQLT-ML 135
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P L + + N L+
Sbjct: 136 PELPALLEYI---NADNNQLT 153
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 1e-08
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LD+ +N+LT +P L+ +N +N L+ +PE ++L E L + +N+L +
Sbjct: 125 LDVDNNQLT-MLPELPALLEY---INADNNQLT-MLPELPTSL---EVLSVRNNQLT-FL 175
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P L +L DVS N L
Sbjct: 176 PELPESLEAL---DVSTNLLE 193
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 19/127 (14%), Positives = 40/127 (31%), Gaps = 6/127 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQN----IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKL 555
LD+S+N L +P+ + N ++ IPE+ +L ++ L N L
Sbjct: 185 LDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPL 242
Query: 556 NGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL 615
+ +I L++ + + S + + +
Sbjct: 243 SSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHA 302
Query: 616 LELLETS 622
E E +
Sbjct: 303 FEHEEHA 309
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 48.8 bits (116), Expect = 5e-06
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 553
+ A + N+ + C + L L+ LS S+P++ I L+++ N
Sbjct: 36 WEKQALPGENRNEAVSLLKE--CLINQFSELQLNRLNLS-SLPDNL--PPQITVLEITQN 90
Query: 554 KLNGQIPPQLTELHSLSKFDVSYNDLS 580
L +P L L D N LS
Sbjct: 91 AL-ISLPELPASLEYL---DACDNRLS 113
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 9e-05
Identities = 27/160 (16%), Positives = 47/160 (29%), Gaps = 11/160 (6%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+NQL+ + TSLE L++ +N+ L +L L+V +E+ L
Sbjct: 147 ADNNQLTMLPEL----PTSLEVLSVRNNQLT-FLPE--LPESLEALDVSTNLLES--LPA 197
Query: 61 KIENCLP-TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ IP +L + L N L+ + L T
Sbjct: 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQ 256
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNM 159
+ FS D + F ++
Sbjct: 257 PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDV 296
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 85.3 bits (211), Expect = 3e-18
Identities = 57/312 (18%), Positives = 96/312 (30%), Gaps = 52/312 (16%)
Query: 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI----STLNLSSVEHL 337
G S Y+L + L+ L + + ++ L +S ++ L
Sbjct: 41 GGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL 100
Query: 338 YLQSNALGGSIPNTIFR--GSALETLDLRDNYFFGRIPH----QINEHSNLRALLLRGNY 391
L++ + G+ P + G L L+LR+ + R Q L+ L + +
Sbjct: 101 TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160
Query: 392 LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVAD 451
Q+ LS +DLS N G L A
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERG-------------------------LISAL 195
Query: 452 IRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI 511
+ + L+L + + + + LDLS N L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQG-----------LDLSHNSLRDAA 244
Query: 512 PSEICD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLS 570
+ CD ++ LNLS L + L LDLS+N+L+ P EL +
Sbjct: 245 GAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL---SVLDLSYNRLDR--NPSPDELPQVG 299
Query: 571 KFDVSYNDLSGP 582
+ N
Sbjct: 300 NLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 7e-18
Identities = 62/291 (21%), Positives = 97/291 (33%), Gaps = 23/291 (7%)
Query: 75 SLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL 134
S NC +L+YL + A + + L+ L + L
Sbjct: 26 SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85
Query: 135 TSAQH-----GLISLDISSNNFTGKLPQNMG-IVLPKLDCMNISKNSFEGNIPS----SI 184
A GL L + + TG P + P L+ +N+ S+
Sbjct: 86 FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145
Query: 185 GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN----YVNLTRLL 240
GL++L ++ S V +L L LS+N G+ + L
Sbjct: 146 WLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204
Query: 241 FLYLDNNHF---SGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNF-SNLYILSMSKNL 296
L L N SG +L LD+S+N L + ++ S L L++S
Sbjct: 205 VLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG 264
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGS 347
L+ L +LD+S N L S L V +L L+ N S
Sbjct: 265 LKQVPKGLPAK---LSVLDLSYNRLD-RNPSPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 4e-17
Identities = 51/255 (20%), Positives = 90/255 (35%), Gaps = 24/255 (9%)
Query: 190 LRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV---NLTRLLFLYLDN 246
L L + A + + SL+ L + +I + ++ L L L+N
Sbjct: 45 LEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLEN 104
Query: 247 NHFSGKI--KDGLLRSSELMVLDISNNHLSGHIPSWMGNFSN-----LYILSMSKNLLEG 299
+G +L +L++ N + +W+ L +LS+++
Sbjct: 105 LEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLN 163
Query: 300 NIPVQFNNLAILQILDISENNLSG-----SMISTLNLSSVEHLYLQSN---ALGGSIPNT 351
Q L LD+S+N G S + L +++ L L++ G
Sbjct: 164 FSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL 223
Query: 352 IFRGSALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMD 410
L+ LDL N + S L +L L L+ KLS++D
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLD 280
Query: 411 LSHNRLNGSIPACIT 425
LS+NRL+ P+
Sbjct: 281 LSYNRLD-RNPSPDE 294
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 8e-17
Identities = 50/247 (20%), Positives = 80/247 (32%), Gaps = 19/247 (7%)
Query: 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF-SLEWLQLS 221
L +L S + + GL+ L + + + G + L L L
Sbjct: 70 LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129
Query: 222 NNNFDGQIFPNY----VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277
N ++ + L L + H + + L LD+S+N G
Sbjct: 130 NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGER 189
Query: 278 PSW----MGNFSNLYILSMSKNLLE---GNIPVQFNNLAILQILDISENNLSGS--MIST 328
F L +L++ +E G LQ LD+S N+L + S
Sbjct: 190 GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC 249
Query: 329 LNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388
S + L L L +P + + L LDL N R P +E + L L+
Sbjct: 250 DWPSQLNSLNLSFTGL-KQVPKGLP--AKLSVLDLSYN-RLDRNP-SPDELPQVGNLSLK 304
Query: 389 GNYLQGP 395
GN
Sbjct: 305 GNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 9e-16
Identities = 47/236 (19%), Positives = 74/236 (31%), Gaps = 40/236 (16%)
Query: 1 MSSNQLSGILPSVIANLT--SLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLL 58
+ + +++G P + T L L L + + R L K
Sbjct: 102 LENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP------------ 149
Query: 59 QVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFP---TWLLE 114
LKVLS+ + + F L LDLS N G
Sbjct: 150 -----------GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198
Query: 115 NNTKLEVLYLTNNSFS-----GFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCM 169
L+VL L N L +A+ L LD+S N+ +L+ +
Sbjct: 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258
Query: 170 NISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF 225
N+S + +P + L +LD+S N+ + L L N F
Sbjct: 259 NLSFTGLKQ-VPKGLP--AKLSVLDLSYNRLD---RNPSPDELPQVGNLSLKGNPF 308
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 2e-14
Identities = 49/271 (18%), Positives = 77/271 (28%), Gaps = 33/271 (12%)
Query: 14 IANLTSLEYLALYDNKFKGRLF----SFCSLANLSKLEVFQLSMEADLLQVKIENCLPTF 69
I SL+ L + + R+ ++ L +L + L + +E P
Sbjct: 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP-- 121
Query: 70 QLKVLSLPNCNLGVIPNFLLHQFN-----LKYLDLSHNKLAGNFPTWLLENNTKLEVLYL 124
L +L+L N + +L LK L ++ NF + L L L
Sbjct: 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDL 180
Query: 125 TNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI 184
++N G + S K P L L N + G +
Sbjct: 181 SDNPELG-----------ERGLISALCPLKFPT-----LQVLALRNAGMETPSGVCSALA 224
Query: 185 GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYL 244
L+ LD+S N L L LS Q+ +L L L
Sbjct: 225 AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDL 281
Query: 245 DNNHFSGKIKDGLLRSSELMVLDISNNHLSG 275
N L + L + N
Sbjct: 282 SYNRLDRNPSPDELPQ--VGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-09
Identities = 29/159 (18%), Positives = 44/159 (27%), Gaps = 10/159 (6%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSL--ANLSKLEVFQLSM-EADL 57
++ + +L L L DN G +L L+V L +
Sbjct: 156 IAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET 215
Query: 58 LQVKIENCLPTF-QLKVLSLPNCNLGVIPN--FLLHQFNLKYLDLSHNKLAGNFPTWLLE 114
QL+ L L + +L L L+LS L
Sbjct: 216 PSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-- 273
Query: 115 NNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG 153
KL VL L+ N + +L + N F
Sbjct: 274 --AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 8e-06
Identities = 34/138 (24%), Positives = 51/138 (36%), Gaps = 10/138 (7%)
Query: 1 MSSNQLSGILPSVIA----NLTSLEYLALYDNKFKGRLFSFCSL-ANLSKLEVFQLSMEA 55
+S N G + A +L+ LAL + + +L A +L+ LS +
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239
Query: 56 DLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLEN 115
+C QL L+L L +P L L LDLS+N+L N L
Sbjct: 240 LRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA--KLSVLDLSYNRLDRNPSPDELPQ 297
Query: 116 NTKLEVLYLTNNSFSGFQ 133
+ L L N F +
Sbjct: 298 ---VGNLSLKGNPFLDSE 312
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 47.2 bits (112), Expect = 9e-06
Identities = 32/220 (14%), Positives = 57/220 (25%), Gaps = 51/220 (23%)
Query: 218 LQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLR---SSELMVLDISNNHLS 274
L+ + D F + + L L + +I G LR S L L + N ++
Sbjct: 49 LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108
Query: 275 GHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSV 334
G P + + L IL++ + + L
Sbjct: 109 GTAPPPLLEATGPD----------------------LNILNLRNVSWATRDAWLAELQQW 146
Query: 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG 394
L+ L + + Q+ L L L N G
Sbjct: 147 LKPGLKV-------------------LSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELG 187
Query: 395 PI-------PHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427
P + L+ L++ + +G A
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR 227
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 8e-05
Identities = 23/133 (17%), Positives = 45/133 (33%), Gaps = 11/133 (8%)
Query: 500 LDLSSNKLTGDIPSEI--CDLQNIHGLNLSHNFLSG---SIPESFSNLKM-IESLDLSHN 553
L L + ++TG P + +++ LNL + + + E LK ++ L ++
Sbjct: 100 LTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA 159
Query: 554 KLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKE-----QFSTFDESSYRGNLHLCGPPI 608
Q+ +LS D+S N G +F T + R +
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219
Query: 609 NKSCTNLLELLET 621
+ L+
Sbjct: 220 CSALAAARVQLQG 232
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 53/302 (17%), Positives = 109/302 (36%), Gaps = 50/302 (16%)
Query: 71 LKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
+K L L N + I N L + NL+ L L+ N + + LE L L+ N
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYN-- 110
Query: 130 SGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI-GKMQ 188
L++ +SS+ F L L +N+ N ++ +S+ +
Sbjct: 111 ---YLSN---------LSSSWFKP---------LSSLTFLNLLGNPYKTLGETSLFSHLT 149
Query: 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV--NLTRLLFLYLDN 246
L++L V + ++ + LE L++ ++ Q + ++ + L L
Sbjct: 150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL--QSYEPKSLKSIQNVSHLILHM 207
Query: 247 NHFSGKIKDGLL-RSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305
+ + + +S + L++ + L + + L
Sbjct: 208 KQHI-LLLEIFVDVTSSVECLELRDTDLD----------------TFHFSELSTGETNSL 250
Query: 306 NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLR 364
+ + I++ +L M +S + L N L S+P+ IF ++L+ + L
Sbjct: 251 IKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL-KSVPDGIFDRLTSLQKIWLH 309
Query: 365 DN 366
N
Sbjct: 310 TN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 45/303 (14%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISE 318
+ + LD+SNN ++ S + NL L ++ N + I F++L L+ LD+S
Sbjct: 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109
Query: 319 NNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQI 376
N LS S LSS+ L L N ++F + L+ L + + F +I +
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169
Query: 377 NEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSR 435
+ L L + + LQ P L ++ +S + L + + + S
Sbjct: 170 FAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE----IFVDVTSS- 223
Query: 436 YLSGFVMVVMDLGVADIRNYYNSTVQL-SLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494
+ ++R+ T L + SL
Sbjct: 224 -----------VECLELRDTDLDTFHFSELSTGETNSLIK-------------------K 253
Query: 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHN 553
+ ++ L + + + + L S N L S+P+ F L ++ + L N
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTN 311
Query: 554 KLN 556
+
Sbjct: 312 PWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 79.0 bits (195), Expect = 6e-16
Identities = 41/227 (18%), Positives = 84/227 (37%), Gaps = 20/227 (8%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N LS + S L+SL +L L N +K L ++L+KL++ ++ ++
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKL 119
+ ++ L+ L + +L L N+ +L L + ++ + +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSV 224
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
E L L + F + G +N+ + I+ S
Sbjct: 225 ECLELRDTDLDTFHFSELSTG------ETNSLIK---------KFTFRNVKITDESLF-Q 268
Query: 180 IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
+ + ++ GL L+ S N+ + SL+ + L N +D
Sbjct: 269 VMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 1e-14
Identities = 59/325 (18%), Positives = 113/325 (34%), Gaps = 74/325 (22%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLE--VFQLSMEADLL 58
+S+N+++ I S + +L+ L L N ++ +E F
Sbjct: 59 LSNNRITYISNSDLQRCVNLQALVLTSNG-------------INTIEEDSFS-------- 97
Query: 59 QVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNT 117
L+ L L L + + +L +L+L N T L + T
Sbjct: 98 --------SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLT 149
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
KL++L + N T I +F G L L+ + I + +
Sbjct: 150 KLQILRVGNM----DTFTK---------IQRKDFAG---------LTFLEELEIDASDLQ 187
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLT 237
P S+ +Q + L + + L + V S+E L+L + + D ++ L+
Sbjct: 188 SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDT---FHFSELS 243
Query: 238 RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297
+ L++ + I++ L + + S L L S+N L
Sbjct: 244 TGET-------------NSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQL 289
Query: 298 EGNIPVQ-FNNLAILQILDISENNL 321
+ ++P F+ L LQ + + N
Sbjct: 290 K-SVPDGIFDRLTSLQKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-11
Identities = 54/321 (16%), Positives = 107/321 (33%), Gaps = 52/321 (16%)
Query: 265 VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGS 324
+ S+ L+ IPS G + L +S N + LQ L ++ N ++
Sbjct: 35 ICKGSSGSLN-SIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-- 89
Query: 325 MIST---LNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQI--NE 378
I +L S+EHL L N L ++ ++ F+ S+L L+L N + + +
Sbjct: 90 TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSH 147
Query: 379 HSNLRALLLRGNYLQGPIPHQ-LCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437
+ L+ L + I + L L +++ + L P + ++ V L
Sbjct: 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI--QNVSHLIL 205
Query: 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYM 497
+ L +D S +E L
Sbjct: 206 H-----------------MKQHILLLEIFVDVTSSVECLE----------------LRDT 232
Query: 498 AGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557
++L+ + + + ++ L + + + + + L+ S N+L
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS 291
Query: 558 QIPPQ-LTELHSLSKFDVSYN 577
+P L SL K + N
Sbjct: 292 -VPDGIFDRLTSLQKIWLHTN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 501 DLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560
SS L IPS + + + L+LS+N ++ +++L L+ N +N I
Sbjct: 37 KGSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIE 92
Query: 561 PQL-TELHSLSKFDVSYNDLS 580
+ L SL D+SYN LS
Sbjct: 93 EDSFSSLGSLEHLDLSYNYLS 113
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 5e-04
Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 500 LDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNG 557
L L+SN + I + L ++ L+LS+N+LS ++ S F L + L+L N
Sbjct: 81 LVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYK- 137
Query: 558 QIPPQ--LTELHSLSKFDVSYNDLSGPIPD 585
+ + L L V D I
Sbjct: 138 TLGETSLFSHLTKLQILRVGNMDTFTKIQR 167
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 84.0 bits (208), Expect = 3e-17
Identities = 62/290 (21%), Positives = 97/290 (33%), Gaps = 47/290 (16%)
Query: 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL 124
C + Q + L +P + N +YL+L N + + LEVL L
Sbjct: 50 CSCSNQFSKVVCTRRGLSEVPQGIPS--NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQL 106
Query: 125 TNN--------SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
N +F+G L S L +L++ N T I +F
Sbjct: 107 GRNSIRQIEVGAFNG--LAS----LNTLELFDNWLT-----------------VIPSGAF 143
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN-YVN 235
E + LR L + +N + SL L L I +
Sbjct: 144 EY--------LSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 236 LTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
L L +L L + + + L L L++S NH P S+L L + +
Sbjct: 195 LFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252
Query: 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNAL 344
+ F+ LA L L+++ NNLS L + L+L N
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 5e-17
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 23/220 (10%)
Query: 214 SLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNN 271
+ +L L NN I + + +L L L L N +I+ G + L L++ +N
Sbjct: 76 NTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDN 133
Query: 272 HLSGHIPS-WMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL 329
L+ IPS S L L + N +E +IP FN + L LD+ E + +
Sbjct: 134 WLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELK----KLEYI 187
Query: 330 ------NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEHSNL 382
L ++++L L + +PN LE L++ N+F P + S+L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIK-DMPN--LTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244
Query: 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
+ L + + + + L L ++L+HN L+ S+P
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPH 283
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 1e-13
Identities = 48/231 (20%), Positives = 90/231 (38%), Gaps = 14/231 (6%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVF--QLSM-EAD 56
+ N + I +L LE L L N + + +F LA+L+ LE+F L++ +
Sbjct: 82 LMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSG 141
Query: 57 LLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLEN 115
+ +L+ L L N + IP++ ++ +L LDL K E
Sbjct: 142 AFE-------YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG 194
Query: 116 NTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNS 175
L+ L L + + GL L++S N+F ++ L L + + +
Sbjct: 195 LFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQ 253
Query: 176 FEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
++ + L L+++ N + L T L L L +N ++
Sbjct: 254 VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 8e-13
Identities = 38/167 (22%), Positives = 66/167 (39%), Gaps = 10/167 (5%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
S++ + + LS +P + SN L++ +N ++ F +L L++L + N
Sbjct: 53 SNQFSKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 320 NLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQIN 377
++ + L+S+ L L N L IP+ F S L L LR+N IP
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNP-IESIPSYAF 167
Query: 378 EH-SNLRAL-LLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
+L L L L+ L L ++L + +P
Sbjct: 168 NRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN 213
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/82 (24%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L+L + D+P+ + L + L +S N P SF L ++ L + +++++ I
Sbjct: 201 LNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LI 257
Query: 560 PPQ-LTELHSLSKFDVSYNDLS 580
L SL + ++++N+LS
Sbjct: 258 ERNAFDGLASLVELNLAHNNLS 279
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L++S N P L ++ L + ++ +S +F L + L+L+HN L+ +
Sbjct: 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SL 281
Query: 560 PPQ-LTELHSLSKFDVSYN 577
P T L L + + +N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 5e-06
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 5/82 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ + L+ ++P I N LNL N + ++F +L +E L L N + QI
Sbjct: 59 VVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QI 114
Query: 560 PPQ-LTELHSLSKFDVSYNDLS 580
L SL+ ++ N L+
Sbjct: 115 EVGAFNGLASLNTLELFDNWLT 136
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L+L N LT IPS L + L L +N + +F+ + + LDL K
Sbjct: 128 LELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEY 186
Query: 559 IPPQ-LTELHSLSKFDVSYNDLS 580
I L +L ++ ++
Sbjct: 187 ISEGAFEGLFNLKYLNLGMCNIK 209
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.9 bits (205), Expect = 6e-17
Identities = 55/220 (25%), Positives = 89/220 (40%), Gaps = 23/220 (10%)
Query: 214 SLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNN 271
+ L L N I N + +L L L L NH I+ G + L L++ +N
Sbjct: 65 NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDN 122
Query: 272 HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL- 329
L+ S L L + N +E +IP FN + L+ LD+ E +S +
Sbjct: 123 RLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELK----RLSYIS 177
Query: 330 -----NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNL 382
LS++ +L L L IPN L+ LDL N+ I + +L
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLR-EIPN--LTPLIKLDELDLSGNHL-SAIRPGSFQGLMHL 233
Query: 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
+ L + + +Q + L+ L ++L+HN L +P
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPH 272
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 82.5 bits (204), Expect = 9e-17
Identities = 65/291 (22%), Positives = 113/291 (38%), Gaps = 49/291 (16%)
Query: 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL 124
C + Q + NL +P+ + N + L+L N++ ++ LE+L L
Sbjct: 39 CSCSNQFSKVICVRKNLREVPDGIST--NTRLLNLHENQIQ-IIKVNSFKHLRHLEILQL 95
Query: 125 TNN--------SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
+ N +F+G L + L +L++ N T +P + L KL + + N
Sbjct: 96 SRNHIRTIEIGAFNG--LAN----LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPI 148
Query: 177 EGNIPSSI-GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN 235
E +IPS ++ LR LD+ K +S+ +L +L L+ N + PN
Sbjct: 149 E-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNL--REIPNLTP 205
Query: 236 LTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
L +L L L NH S I+ G + L L + + + I
Sbjct: 206 LIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQ-VIE---------------- 247
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNAL 344
F+NL L ++++ NNL+ L +E ++L N
Sbjct: 248 -------RNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 12/230 (5%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKG-RLFSFCSLANLSKLEVF--QLSMEADL 57
+ NQ+ I + +L LE L L N + + +F LANL+ LE+F +L+
Sbjct: 71 LHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT---- 126
Query: 58 LQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENN 116
+ L +LK L L N + IP++ ++ +L+ LDL K E
Sbjct: 127 IPNGAFVYLS--KLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 117 TKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
+ L L L + + L LD+S N+ + + L L + + ++
Sbjct: 185 SNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQI 243
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
+ ++ +Q L ++++ N L T LE + L +N ++
Sbjct: 244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 43/167 (25%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
S++ + +L +P + +N +L++ +N ++ F +L L+IL +S N
Sbjct: 42 SNQFSKVICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98
Query: 320 NLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQI- 376
++ I L+++ L L N L +IPN F S L+ L LR+N IP
Sbjct: 99 HIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNP-IESIPSYAF 156
Query: 377 NEHSNLRAL-LLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
N +LR L L L L L ++L+ L IP
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN 202
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 49.4 bits (118), Expect = 3e-06
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L+L+ L +IP+ + L + L+LS N LS P SF L ++ L + +++ I
Sbjct: 190 LNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VI 246
Query: 560 PPQ-LTELHSLSKFDVSYNDLS 580
L SL + ++++N+L+
Sbjct: 247 ERNAFDNLQSLVEINLAHNNLT 268
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 9e-06
Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 5/82 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ L ++P I N LNL N + SF +L+ +E L LS N + I
Sbjct: 48 VICVRKNLR-EVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TI 103
Query: 560 PPQ-LTELHSLSKFDVSYNDLS 580
L +L+ ++ N L+
Sbjct: 104 EIGAFNGLANLNTLELFDNRLT 125
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L+L N+LT IP+ L + L L +N + +F+ + + LDL K
Sbjct: 117 LELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSY 175
Query: 559 IPPQ-LTELHSLSKFDVSYNDLS 580
I L +L +++ +L
Sbjct: 176 ISEGAFEGLSNLRYLNLAMCNLR 198
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L LS N + I L N++ L L N L+ +F L ++ L L +N +
Sbjct: 93 LQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-S 150
Query: 559 IPP----QLTELHSL 569
IP ++ L L
Sbjct: 151 IPSYAFNRIPSLRRL 165
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 4e-05
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDLS N L+ P L ++ L + + + +F NL+ + ++L+HN L +
Sbjct: 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LL 270
Query: 560 PPQ-LTELHSLSKFDVSYN 577
P T LH L + + +N
Sbjct: 271 PHDLFTPLHHLERIHLHHN 289
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 79.2 bits (196), Expect = 9e-16
Identities = 82/433 (18%), Positives = 147/433 (33%), Gaps = 68/433 (15%)
Query: 1 MSSNQLSGI-LPSVIANLTSLEYLALYDNKFKGR-LFSFCS-LANLSKLEVFQLS----- 52
+ +LS ++ L + + L D S L L L
Sbjct: 10 IQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG 69
Query: 53 -MEADLLQVKIENCLPTFQLKVLSLPNCNLG-----VIPNFLLHQFNLKYLDLSHNKL-- 104
+ + ++ P+ +++ LSL NC L V+ + L L+ L LS N L
Sbjct: 70 DVGVHCVLQGLQT--PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 127
Query: 105 --AGNFPTWLLENNTKLEVLYLTNNSFSG------FQLTSAQHGLISLDISSNNFTGKLP 156
LL+ +LE L L S S + A+ L +S+N+
Sbjct: 128 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187
Query: 157 QNMGIVLP----KLDCMNISKNSFE----GNIPSSIGKMQGLRLLDVSSNKF----AGEL 204
+ + L +L+ + + ++ + LR L + SNK EL
Sbjct: 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAEL 247
Query: 205 SQSPVTNCFSLEWLQLSNNNFDGQ----IFPNYVNLTRLLFLYLDNNHFSGK----IKDG 256
+ L L + + + L L L N + + +
Sbjct: 248 CPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 307
Query: 257 LLR-SSELMVLDISNNHLSG----HIPSWMGNFSNLYILSMSKNLLEGNIPVQF------ 305
LL +L L + + + H S + L L +S N L + V+
Sbjct: 308 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL-EDAGVRELCQGLG 366
Query: 306 NNLAILQILDISENNLS----GSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG----- 355
++L++L +++ ++S S+ +TL S+ L L +N LG + +
Sbjct: 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426
Query: 356 SALETLDLRDNYF 368
LE L L D Y+
Sbjct: 427 CLLEQLVLYDIYW 439
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 61/382 (15%), Positives = 123/382 (32%), Gaps = 61/382 (15%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG------FQLTSAQHGLISLDI 146
+++ LD+ +L+ LL + +V+ L + + L L++
Sbjct: 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 147 SSNNFTGK----LPQNMGIVLPKLDCMNISKNSF--EG--NIPSSIGKMQGLRLLDVSSN 198
SN + Q + K+ +++ G + S++ + L+ L +S N
Sbjct: 64 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123
Query: 199 KF----AGELSQSPVTNCFSLEWLQLSNNNFDGQ----IFPNYVNLTRLLFLYLDNNHFS 250
L + + LE LQL + + L + NN +
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183
Query: 251 GK----IKDGLLRSSE-LMVLDISNNHLS----GHIPSWMGNFSNLYILSMSKNLLEGN- 300
+ GL S L L + + ++ + + + ++L L++ N L
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243
Query: 301 ----IPVQFNNLAILQILDISENNLSGSMISTL-----NLSSVEHLYLQSNALGGSIPNT 351
P + + L+ L I E ++ L S++ L L N LG
Sbjct: 244 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 303
Query: 352 IFRG-----SALETLDLRDNYF----FGRIPHQINEHSNLRALLLRGNYLQGP------- 395
+ LE+L ++ F + ++ L L + N L+
Sbjct: 304 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ 363
Query: 396 -IPHQLCQLRKLSIMDLSHNRL 416
+ LR L L+ +
Sbjct: 364 GLGQPGSVLRVL---WLADCDV 382
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 2e-14
Identities = 74/414 (17%), Positives = 130/414 (31%), Gaps = 68/414 (16%)
Query: 70 QLKVLSLPNCNLG-----VIPNFLLHQFNLKYLDLSHNKL----AGNFPTWLLENNTKLE 120
Q +V+ L +C L I + L L L+L N+L L + K++
Sbjct: 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 88
Query: 121 VLYLTNNSFSG------FQLTSAQHGLISLDISSNNFTGK----LPQNMGIVLPKLDCMN 170
L L N +G L L +S N L + + +L+ +
Sbjct: 89 KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148
Query: 171 ISKNSFEGNIPSSIGKM----QGLRLLDVSSNKF----AGELSQSPVTNCFSLEWLQLSN 222
+ S + + + L VS+N L Q + LE L+L +
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208
Query: 223 NNFDGQ----IFPNYVNLTRLLFLYLDNNHFSGK----IKDGLLRSS-ELMVLDISNNHL 273
+ + L L L +N + GLL S L L I +
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268
Query: 274 S----GHIPSWMGNFSNLYILSMSKNLLEGN-----IPVQFNNLAILQILDISENNLS-- 322
+ G + + +L LS++ N L L+ L + + +
Sbjct: 269 TAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA 328
Query: 323 -----GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-----SALETLDLRDNYF---- 368
S+++ + L + +N L + + +G S L L L D
Sbjct: 329 CCSHFSSVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386
Query: 369 FGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRK-----LSIMDLSHNRLN 417
+ + + +LR L L N L QL + + L + L +
Sbjct: 387 CSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 7e-08
Identities = 51/266 (19%), Positives = 94/266 (35%), Gaps = 42/266 (15%)
Query: 1 MSSNQLSG-----ILPSVIANLTSLEYLALYDNKF--KGRLFSFCSLANLSKLEVFQLSM 53
+S+N ++ + + + LE L L +A+ + L L
Sbjct: 177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236
Query: 54 ------EADLLQVKIENCLPTFQLKVLSLPNCNLGV-----IPNFLLHQFNLKYLDLSHN 102
L + + L+ L + C + + L + +LK L L+ N
Sbjct: 237 NKLGDVGMAELCPGLLHPSSR--LRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294
Query: 103 KL----AGNFPTWLLENNTKLEVLYLTNNSFS--GFQ-LTSA---QHGLISLDISSNNFT 152
+L A LLE +LE L++ + SF+ +S L+ L IS+N
Sbjct: 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354
Query: 153 GK----LPQNMGIVLPKLDCMNISKNSF--EG--NIPSSIGKMQGLRLLDVSSNKF---- 200
L Q +G L + ++ ++ +++ LR LD+S+N
Sbjct: 355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG 414
Query: 201 AGELSQSPVTNCFSLEWLQLSNNNFD 226
+L +S LE L L + +
Sbjct: 415 ILQLVESVRQPGCLLEQLVLYDIYWS 440
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-06
Identities = 57/291 (19%), Positives = 92/291 (31%), Gaps = 48/291 (16%)
Query: 10 LPSVIANLTSLEYLALYDNKFK---GRLFSFCSLANLSKLEVFQLSME-------ADLLQ 59
L SV+ + L + +N R+ + +LE +L DL
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221
Query: 60 VKIENCLPTFQLKVLSLPNCNLG------VIPNFLLHQFNLKYLDLSHNKLAGNFPTWL- 112
+ L+ L+L + LG + P L L+ L + + L
Sbjct: 222 IVASKA----SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLC 277
Query: 113 --LENNTKLEVLYLTNNSFS-------GFQLTSAQHGLISLDISSNNFTGKLPQNMGIVL 163
L L+ L L N L L SL + S +FT + VL
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337
Query: 164 ---PKLDCMNISKNSFEGNIPSSIGKM-----QGLRLLDVSSNKF----AGELSQSPVTN 211
L + IS N E + + LR+L ++ L+ + +
Sbjct: 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-LLA 396
Query: 212 CFSLEWLQLSNNNFDGQIFPN-----YVNLTRLLFLYLDNNHFSGKIKDGL 257
SL L LSNN L L L + ++S +++D L
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL 447
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 1e-15
Identities = 48/210 (22%), Positives = 80/210 (38%), Gaps = 16/210 (7%)
Query: 214 SLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNN 271
+ + + L N + + L L+L +N + +I + L LD+S+N
Sbjct: 33 ASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDN 90
Query: 272 HLSGHIPS-WMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMIST- 328
+ L+ L + + L+ + F LA LQ L + +N L +
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL--QALPDD 147
Query: 329 --LNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRA 384
+L ++ HL+L N + S+P FRG +L+ L L N + L
Sbjct: 148 TFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMT 205
Query: 385 LLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
L L N L L LR L + L+ N
Sbjct: 206 LYLFANNLSALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 7e-15
Identities = 45/182 (24%), Positives = 75/182 (41%), Gaps = 12/182 (6%)
Query: 242 LYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
++L N S + R+ L +L + +N L+ + + L L +S N +
Sbjct: 37 IFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95
Query: 301 IPVQ-FNNLAILQILDISENNLSGSMIST---LNLSSVEHLYLQSNALGGSIPNTIFRG- 355
+ F+ L L L + L + L+++++LYLQ NAL ++P+ FR
Sbjct: 96 VDPATFHGLGRLHTLHLDRCGLQ--ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDL 152
Query: 356 SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414
L L L N +P + +L LLL N + PH L +L + L N
Sbjct: 153 GNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 415 RL 416
L
Sbjct: 212 NL 213
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 4e-14
Identities = 50/282 (17%), Positives = 83/282 (29%), Gaps = 87/282 (30%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
+ + L N+++ + P L +L+L +N +
Sbjct: 33 ASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLA---------------------- 69
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
I +F G + L LD+S N + +
Sbjct: 70 -----------------RIDAAAFTG--------LALLEQLDLSDNAQLRSVDPATFHGL 104
Query: 213 FSLEWLQLSNNNF---DGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDI 268
L L L +F L L +LYL +N + D R L L +
Sbjct: 105 GRLHTLHLDRCGLQELGPGLF---RGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFL 160
Query: 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST 328
N +S +P F L L L + +N + + +
Sbjct: 161 HGNRIS-SVPERA-----------------------FRGLHSLDRLLLHQNRV--AHVHP 194
Query: 329 ---LNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDN 366
+L + LYL +N L ++P AL+ L L DN
Sbjct: 195 HAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 2e-13
Identities = 44/234 (18%), Positives = 78/234 (33%), Gaps = 42/234 (17%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ N++S + + +L L L+ N + L+ LE LS A L V
Sbjct: 39 LHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQ-FNLKYLDLSHNKLAGNFPTWLLENNTKL 119
+L L L C L + L L+YL L N L P + L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155
Query: 120 EVLYLTNNSFSGFQLTSAQHG-------LISLDISSNNFTGKLPQNMGIVLPKLDCMNIS 172
L+L N +++S L L + N ++
Sbjct: 156 THLFLHGN-----RISSVPERAFRGLHSLDRLLLHQNRVA-----------------HVH 193
Query: 173 KNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
++F + L L + +N + L + +L++L+L++N +
Sbjct: 194 PHAFRD--------LGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 42/172 (24%), Positives = 68/172 (39%), Gaps = 17/172 (9%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISE 318
+ + + N +S + NL IL + N+L I F LA+L+ LD+S+
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSD 89
Query: 319 NNLSGSMISTL------NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGR 371
N + ++ L + L+L L + +FRG +AL+ L L+DN
Sbjct: 90 NAQ----LRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNAL-QA 143
Query: 372 IPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
+P NL L L GN + L L + L NR+ +
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 2e-11
Identities = 38/189 (20%), Positives = 58/189 (30%), Gaps = 21/189 (11%)
Query: 70 QLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNS 128
L +L L + L I L+ LDLS N + +L L+L
Sbjct: 57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC- 115
Query: 129 FSGFQLTSAQHG-------LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
L G L L + N LP + L L + + N
Sbjct: 116 ----GLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN---FDGQIFPNYVNLTR 238
+ + L L + N+ A + + L L L NN + L
Sbjct: 171 RAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEAL---APLRA 226
Query: 239 LLFLYLDNN 247
L +L L++N
Sbjct: 227 LQYLRLNDN 235
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L L N L +P + DL N+ L L N +S +F L ++ L L N++
Sbjct: 134 LYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-H 191
Query: 559 IPPQ-LTELHSLSKFDVSYNDLS 580
+ P +L L + N+LS
Sbjct: 192 VHPHAFRDLGRLMTLYLFANNLS 214
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 8e-06
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 1/82 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ L N+++ + +N+ L L N L+ +F+ L ++E LDLS N +
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 560 PPQ-LTELHSLSKFDVSYNDLS 580
P L L + L
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQ 118
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 500 LDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 557
LDLS N + L +H L+L L + F L ++ L L N L
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ- 142
Query: 558 QIPPQ-LTELHSLSKFDVSYNDLS 580
+P +L +L+ + N +S
Sbjct: 143 ALPDDTFRDLGNLTHLFLHGNRIS 166
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 8e-05
Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L +P I + L N +S SF + + L L N L +I
Sbjct: 16 TSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARI 71
Query: 560 PPQ-LTELHSLSKFDVSYNDLSGPIPD 585
T L L + D+S N +
Sbjct: 72 DAAAFTGLALLEQLDLSDNAQLRSVDP 98
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 75.9 bits (187), Expect = 4e-15
Identities = 57/295 (19%), Positives = 111/295 (37%), Gaps = 51/295 (17%)
Query: 40 LANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDL 99
L+ ++++ + L + LS + I + + NL L+L
Sbjct: 15 DPALANAIKIAAG-KSNVTDTVTQADLD--GITTLSAFGTGVTTIEG-VQYLNNLIGLEL 70
Query: 100 SHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNM 159
N++ P L+N TK+ L L+ N + + +LD++S T
Sbjct: 71 KDNQITDLAP---LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD------ 121
Query: 160 GIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQ 219
+ + + L++L + N+ + SP+ +L++L
Sbjct: 122 ---------------------VTPLAGLSNLQVLYLDLNQIT---NISPLAGLTNLQYLS 157
Query: 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISNNHLSGHI 277
+ N NL++L L D+N KI D L L+ + + NN +S
Sbjct: 158 IGNAQV--SDLTPLANLSKLTTLKADDN----KISDISPLASLPNLIEVHLKNNQISDVS 211
Query: 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLS 332
P + N SNL+I++++ + NNL + ++ SG+ I+ +S
Sbjct: 212 P--LANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVV----KGPSGAPIAPATIS 260
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 2e-11
Identities = 52/286 (18%), Positives = 93/286 (32%), Gaps = 55/286 (19%)
Query: 153 GKLPQNMGI-------VLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELS 205
G + Q I L + K++ + + G+ L +
Sbjct: 1 GSITQPTAINVIFPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVT---T 55
Query: 206 QSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSEL 263
V +L L+L +N NLT++ L L N +K+ + +
Sbjct: 56 IEGVQYLNNLIGLELKDNQI--TDLAPLKNLTKITELELSGN----PLKNVSAIAGLQSI 109
Query: 264 MVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG 323
LD+++ ++ + + SNL +L + N + NI L LQ L I +S
Sbjct: 110 KTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD 165
Query: 324 SMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL 382
++ L NLS + L N + I + NL
Sbjct: 166 --LTPLANLSKLTTLKADDNKIS-DISP-------------------------LASLPNL 197
Query: 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428
+ L+ N + P L L I+ L++ + NL+
Sbjct: 198 IEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLV 241
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 3e-09
Identities = 39/226 (17%), Positives = 86/226 (38%), Gaps = 23/226 (10%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVF--QLSMEADLL 58
+ NQ++ + + + NLT + L L N K + + L ++ L++ Q++
Sbjct: 70 LKDNQITDL--APLKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQIT------ 120
Query: 59 QVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK 118
+ L+VL L + I L NL+YL + + +++ P L N +K
Sbjct: 121 --DVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP---LANLSK 174
Query: 119 LEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
L L +N S ++ LI + + +N + P L + ++ +
Sbjct: 175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLA---NTSNLFIVTLTNQTITN 231
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224
+ L + +V ++ + +++ + L+ N
Sbjct: 232 Q---PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNL 274
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L+L N++T D+ + + +L I L LS N L + + L+ I++LDL+ ++
Sbjct: 68 LELKDNQIT-DL-APLKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVT 123
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P L L +L + N ++
Sbjct: 124 P--LAGLSNLQVLYLDLNQIT 142
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L L N++T +I S + L N+ L++ + +S + +NL + +L NK++ I
Sbjct: 134 LYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQVS-DL-TPLANLSKLTTLKADDNKIS-DI 188
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P L L +L + + N +S
Sbjct: 189 SP-LASLPNLIEVHLKNNQIS 208
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.4 bits (177), Expect = 2e-13
Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 21/231 (9%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
+L + ++ + N+ Q + L ++ N T
Sbjct: 22 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 78
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
P L L + + +N + ++ SS+ ++ L+ L + N + + + +
Sbjct: 79 DIKPLTN---LKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS---DINGLVHL 130
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISN 270
LE L L NN LT+L L L++N +I D L ++L L +S
Sbjct: 131 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYLSK 184
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
NH+S + + + NL +L + +NL + + ++ +L
Sbjct: 185 NHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 72.1 bits (176), Expect = 3e-13
Identities = 55/305 (18%), Positives = 107/305 (35%), Gaps = 54/305 (17%)
Query: 94 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG 153
+ + FP + + L S + + + + + ++++
Sbjct: 1 MGETITVSTPIKQIFP---DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK- 56
Query: 154 KLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF 213
S +G I + + L ++ NK P+TN
Sbjct: 57 ---------------------SVQG-----IQYLPNVTKLFLNGNKLT---DIKPLTNLK 87
Query: 214 SLEWLQLSNNNFDGQI--FPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDIS 269
+L WL L N +I + +L +L L L++N I D GL+ +L L +
Sbjct: 88 NLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHN----GISDINGLVHLPQLESLYLG 139
Query: 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL 329
NN ++ I + + L LS+ N + +I L LQ L +S+N++ S + L
Sbjct: 140 NNKIT-DITV-LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHI--SDLRAL 193
Query: 330 -NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388
L +++ L L S N T+ D P I++ + ++
Sbjct: 194 AGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDGDYEKPNVK 251
Query: 389 GNYLQ 393
+ +
Sbjct: 252 WHLPE 256
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 70.9 bits (173), Expect = 7e-13
Identities = 49/319 (15%), Positives = 93/319 (29%), Gaps = 69/319 (21%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ ++ + L S++ + ++ K S+ + L
Sbjct: 28 LKKKSVTDAVT--QNELNSIDQIIANNSDIK-------SVQGIQYLP------------- 65
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+ L L L I L + NL +L L NK+ L++ KL+
Sbjct: 66 ---------NVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSS---LKDLKKLK 112
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
L L +N S L SL + +N I+
Sbjct: 113 SLSLEHNGISDINGLVHLPQLESLYLGNN--------------------KITD------- 145
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLL 240
+ + ++ L L + N+ + P+ L+ L LS N+ L L
Sbjct: 146 ITVLSRLTKLDTLSLEDNQIS---DIVPLAGLTKLQNLYLSKNHI--SDLRALAGLKNLD 200
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
L L + K + + ++ L P + + + ++ +L E
Sbjct: 201 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFT 258
Query: 301 IPVQFNNLAILQILDISEN 319
V F + I
Sbjct: 259 NEVSFIFYQPVTIGKAKAR 277
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 2e-12
Identities = 47/240 (19%), Positives = 88/240 (36%), Gaps = 22/240 (9%)
Query: 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222
+ N+ K S + ++ + + +++ S + ++ L L+
Sbjct: 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK---SVQGIQYLPNVTKLFLNG 74
Query: 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSW 280
N NL L +L+LD N KIKD L +L L + +N +S I
Sbjct: 75 NKL--TDIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGIS-DING- 126
Query: 281 MGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYL 339
+ + L L + N + +I V + L L L + +N +S I L L+ +++LYL
Sbjct: 127 LVHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQISD--IVPLAGLTKLQNLYL 182
Query: 340 QSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQ 399
N + S + L+ L+L + + + + L P
Sbjct: 183 SKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIIS 240
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 58.2 bits (140), Expect = 6e-09
Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 16/198 (8%)
Query: 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS 279
++ + QIFP+ + L + + L S + + +N+ + +
Sbjct: 5 ITVSTPIKQIFPDD-AFAETIKDNLKKKSVTDAVTQNELNS--IDQIIANNSDIK-SVQG 60
Query: 280 WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLY 338
+ N+ L ++ N L +I NL L L + EN + +S+L +L ++ L
Sbjct: 61 -IQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK--DLSSLKDLKKLKSLS 115
Query: 339 LQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398
L+ N + I + LE+L L +N ++ + L L L N + +P
Sbjct: 116 LEHNGIS-DING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQISDIVP- 170
Query: 399 QLCQLRKLSIMDLSHNRL 416
L L KL + LS N +
Sbjct: 171 -LAGLTKLQNLYLSKNHI 187
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 7e-06
Identities = 50/346 (14%), Positives = 109/346 (31%), Gaps = 64/346 (18%)
Query: 307 NLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365
A ++ + +++ T L+S++ + ++ + S+ I + L L
Sbjct: 19 AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIK-SVQG-IQYLPNVTKLFLNG 74
Query: 366 NYFFGRIPH--QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPAC 423
N ++ + NL L L N ++ L L+KL + L HN ++
Sbjct: 75 N----KLTDIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGIS-----D 123
Query: 424 ITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG-----IDGRSLGTQVEV 478
I L + L L I S T+++
Sbjct: 124 INGL--------------------------VHLPQLESLYLGNNKITDITVLSRLTKLDT 157
Query: 479 NFMTKNRYESYKGVI-LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPE 537
+ N+ + L + L LS N ++ D+ + L+N+ L L
Sbjct: 158 LSLEDNQISDIVPLAGLTKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPIN 215
Query: 538 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS----------GPIPDKE 587
SNL + ++ + L P +++ K +V ++ P+ +
Sbjct: 216 HQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGK 273
Query: 588 QFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDESAVD 633
+ F + + + T + +E ++ +
Sbjct: 274 AKARFHGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTK 319
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 30/238 (12%)
Query: 167 DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
CM ++ N+P S + LD+S N L + L+ L LS
Sbjct: 13 QCMELNFYKIPDNLPFS------TKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEI- 64
Query: 227 GQIFPNYV--NLTRLLFLYLDNNHFS---GKIKDGLLRSSELMVLDISNNHLSGHIPSWM 281
Q + +L+ L L L N GL S L L +L+ + ++
Sbjct: 65 -QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL---SSLQKLVAVETNLA-SLENFP 119
Query: 282 -GNFSNLYILSMSKNLLEGNIPVQ--FNNLAILQILDISENNLS----GSMISTLNLSSV 334
G+ L L+++ NL++ + + F+NL L+ LD+S N + + + +
Sbjct: 120 IGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLL 178
Query: 335 E-HLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGN 390
L L N + I F+ L+ L L N +P I + ++L+ + L N
Sbjct: 179 NLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 4e-11
Identities = 49/246 (19%), Positives = 87/246 (35%), Gaps = 63/246 (25%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFK----GRLFSFCSLANLSKLEVF--QLSME 54
+S N L + + L+ L L + + G ++ SL++LS L + +
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG---AYQSLSHLSTLILTGNPIQS- 90
Query: 55 ADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQ-FNLKYLDLSHNKL-----AGNF 108
L + + L L+ L NL + NF + LK L+++HN + F
Sbjct: 91 ---LALGAFSGLS--SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145
Query: 109 PTWLLENNTKLEVLYLTNN--------SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMG 160
N T LE L L++N L +SLD+S N
Sbjct: 146 -----SNLTNLEHLDLSSNKIQSIYCTDLRV--LHQMPLLNLSLDLSLNPMN-------- 190
Query: 161 IVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL 220
I +F+ +++ L+ L + +N+ + SL+ + L
Sbjct: 191 ---------FIQPGAFK--------EIR-LKELALDTNQLK-SVPDGIFDRLTSLQKIWL 231
Query: 221 SNNNFD 226
N +D
Sbjct: 232 HTNPWD 237
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 47/215 (21%), Positives = 82/215 (38%), Gaps = 32/215 (14%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHG-------LISLD 145
+ K LDLS N L + ++ + +L+VL L+ ++ + + G L +L
Sbjct: 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRC-----EIQTIEDGAYQSLSHLSTLI 82
Query: 146 ISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNKFAGEL 204
++ N L L L + + + ++ + G ++ L+ L+V+ N +
Sbjct: 83 LTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNL----I 136
Query: 205 SQSPVTNCFS----LEWLQLSNNNF---DGQIFPNYVNLTRL-LFLYLDNNHFSGKIKDG 256
+ FS LE L LS+N + L L L L N + I+ G
Sbjct: 137 QSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPG 195
Query: 257 LLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291
+ L L + N L +P G F L L
Sbjct: 196 AFKEIRLKELALDTNQLK-SVPD--GIFDRLTSLQ 227
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 54.2 bits (131), Expect = 4e-08
Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 19/155 (12%)
Query: 277 IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL------N 330
IP + L +S N L F + LQ+LD+S I T+ +
Sbjct: 22 IPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-----IQTIEDGAYQS 74
Query: 331 LSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLR 388
LS + L L N + S+ F G S+L+ L + + + H L+ L +
Sbjct: 75 LSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVA 132
Query: 389 GNYLQG-PIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
N +Q +P L L +DLS N++ SI
Sbjct: 133 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC 166
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 8e-04
Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)
Query: 500 LDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG- 557
LDLS ++ I L ++ L L+ N + +FS L ++ L L
Sbjct: 57 LDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL 115
Query: 558 -----QIPPQLTELH 567
L EL+
Sbjct: 116 ENFPIGHLKTLKELN 130
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 69.4 bits (170), Expect = 4e-13
Identities = 45/211 (21%), Positives = 74/211 (35%), Gaps = 24/211 (11%)
Query: 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222
+++C + + ++P +L +S N S + + L L L
Sbjct: 12 HLEVNCDKRNLTALPPDLPKD------TTILHLSENLLY-TFSLATLMPYTRLTQLNLDR 64
Query: 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG 282
L L L L +N + L VLD+S N L+ +P G
Sbjct: 65 AEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPL--G 118
Query: 283 NF---SNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMIST---LNLSSVE 335
L L + N L+ +P L+ L ++ NNL + + L +++
Sbjct: 119 ALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNL--TELPAGLLNGLENLD 175
Query: 336 HLYLQSNALGGSIPNTIFRGSALETLDLRDN 366
L LQ N+L +IP F L L N
Sbjct: 176 TLLLQENSL-YTIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 8e-12
Identities = 46/181 (25%), Positives = 73/181 (40%), Gaps = 19/181 (10%)
Query: 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
L+L N L+ + L L++ L+ + G L L +S N L+ ++
Sbjct: 36 LHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD-GTLPVLGTLDLSHNQLQ-SL 92
Query: 302 PVQFNNLAILQILDISENNLSGSMISTL------NLSSVEHLYLQSNALGGSIPNTIFRG 355
P+ L L +LD+S N +++L L ++ LYL+ N L ++P +
Sbjct: 93 PLLGQTLPALTVLDVSFNR-----LTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTP 146
Query: 356 -SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
LE L L +N +P + NL LLL+ N L IP L L
Sbjct: 147 TPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204
Query: 414 N 414
N
Sbjct: 205 N 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 1e-09
Identities = 40/164 (24%), Positives = 57/164 (34%), Gaps = 28/164 (17%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N L + + T L L L + +L +L L L DL
Sbjct: 38 LSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPVLGTL---------DLSHN 87
Query: 61 KIENCLPTF----QLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLEN 115
++++ L VL + L +P L L+ L L N+L P LL
Sbjct: 88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTP 146
Query: 116 NTKLEVLYLTNNSFSGFQLTSAQHG-------LISLDISSNNFT 152
KLE L L NN LT G L +L + N+
Sbjct: 147 TPKLEKLSLANN-----NLTELPAGLLNGLENLDTLLLQENSLY 185
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 39/165 (23%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ + ++ +L+ +P + IL +S+NLL L L++
Sbjct: 9 VASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65
Query: 320 NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH 379
L+ + L + L L N L S+P AL LD+ N +P
Sbjct: 66 ELT-KLQVDGTLPVLGTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRG 122
Query: 380 -SNLRALLLRGNYLQGPIPHQLCQ-LRKLSIMDLSHNRLNGSIPA 422
L+ L L+GN L+ +P L KL + L++N L +PA
Sbjct: 123 LGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPA 165
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 38/132 (28%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N+L+ + + L L+ L L N+ K ++ LL
Sbjct: 107 VSFNRLTSLPLGALRGLGELQELYLKGNELK--------------------TLPPGLLT- 145
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKL----AGNFPTWLLEN 115
PT +L+ LSL N NL +P LL+ NL L L N L G F
Sbjct: 146 ------PTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF------G 193
Query: 116 NTKLEVLYLTNN 127
+ L +L N
Sbjct: 194 SHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 11/85 (12%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L+L +LT + + L + L+LSHN L S+P L + LD+S N+L +
Sbjct: 60 LNLDRAELT-KLQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 560 PP----QLTELHSLSKFDVSYNDLS 580
P L EL L + N+L
Sbjct: 116 PLGALRGLGELQELY---LKGNELK 137
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
++ LT +P ++ ++ L+LS N L + + L+L +L
Sbjct: 15 VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL--TK 69
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
L L D+S+N L
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ 90
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 500 LDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSIPES-FSNLKMIESLDLSHNKLNG 557
L L N+L +P + + L+L++N L+ +P + L+ +++L L N L
Sbjct: 129 LYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT 186
Query: 558 QIPPQLTELHSLSKFDVSYN 577
IP H L + N
Sbjct: 187 -IPKGFFGSHLLPFAFLHGN 205
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 5e-12
Identities = 41/231 (17%), Positives = 78/231 (33%), Gaps = 19/231 (8%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+L I + LE + + N + +NL KL ++ +LL +
Sbjct: 37 FVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI-EADVFSNLPKLHEIRIEKANNLLYI 95
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFL-LHQFNLKYLDLSHNKLAGNFPTWLLEN-NTK 118
E L+ L + N + +P+ +H LD+ N + +
Sbjct: 96 NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFE 155
Query: 119 LEVLYLTNNSFSG-----FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
+L+L N F T L L++S NN +LP ++ ++IS+
Sbjct: 156 SVILWLNKNGIQEIHNSAFNGTQ----LDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 174 NSFEGNIPSSI-GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNN 223
++PS ++ LR + K + +L L+
Sbjct: 212 TRIH-SLPSYGLENLKKLRARSTYNLK-----KLPTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 44/196 (22%), Positives = 69/196 (35%), Gaps = 16/196 (8%)
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
+ L I+ G +L ++IS N + I + FSNL L
Sbjct: 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEA--DVFSNLPKLH-EIR 85
Query: 296 LLEGN----IPVQ-FNNLAILQILDISENNLSG-SMISTLNLSSVEHLYLQSNALGGSIP 349
+ + N I + F NL LQ L IS + + ++ L +Q N +I
Sbjct: 86 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE 145
Query: 350 NTIFRG--SALETLDLRDNYFFGRIPHQINEHSNLRAL-LLRGNYLQGPIPHQLCQLRKL 406
F G L L N I + + L L L N L+
Sbjct: 146 RNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 204
Query: 407 SIMDLSHNRLNGSIPA 422
I+D+S R++ S+P+
Sbjct: 205 VILDISRTRIH-SLPS 219
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 35/251 (13%), Positives = 75/251 (29%), Gaps = 34/251 (13%)
Query: 311 LQILDISENNLSGSMIST---LNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDN 366
L L +I +E + + N + I +F L + +
Sbjct: 32 AIELRFVLTKLR--VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89
Query: 367 YFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACIT 425
I + ++ NL+ LL+ ++ + ++D+ N +I
Sbjct: 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE---- 145
Query: 426 NLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNR 485
F + + + N ++ +G L E+N N
Sbjct: 146 RNSFVGLSFESV-------------ILWLNKNGIQEIHNSAFNGTQL---DELNLSDNNN 189
Query: 486 YESYKGVI---LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNL 542
E + LD+S ++ +PS L+N+ L + +P + L
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIH-SLPSYG--LENLKKLRARSTYNLKKLP-TLEKL 245
Query: 543 KMIESLDLSHN 553
+ L++
Sbjct: 246 VALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 52.9 bits (127), Expect = 2e-07
Identities = 43/251 (17%), Positives = 90/251 (35%), Gaps = 29/251 (11%)
Query: 332 SSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQI-NEHSNLRAL-LLR 388
+ L L I F G LE +++ N I + + L + + +
Sbjct: 30 RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88
Query: 389 GNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLG 448
N L P L L + +S+ + +P K+ S ++D+
Sbjct: 89 ANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPD------VHKIHSLQKV-----LLDIQ 136
Query: 449 VADIRNYYNSTVQ-LSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKL 507
N T++ S G+ S+ + N + + ++ G LD + +N L
Sbjct: 137 ----DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL--NLSDNNNL 190
Query: 508 TGDIPSEICD-LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL 566
++P+++ L++S + NLK + + + K ++P L +L
Sbjct: 191 E-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPT-LEKL 245
Query: 567 HSLSKFDVSYN 577
+L + ++Y
Sbjct: 246 VALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 48/261 (18%), Positives = 85/261 (32%), Gaps = 19/261 (7%)
Query: 70 QLKVLSLPNCN-LGVIPNFLLHQ-FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN 127
L+ + + + L VI + L + + +N L+ L ++N
Sbjct: 55 DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114
Query: 128 SFSGFQLTSAQHG--LISLDISSNNFTGKLPQNMGIVLP-KLDCMNISKNSFEGNIPSSI 184
H + LDI N + +N + L + + ++KN + I +S
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA 173
Query: 185 GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV--NLTRLLFL 242
L L++S N EL L +S P+Y NL +L
Sbjct: 174 FNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI--HSLPSYGLENLKKLRAR 231
Query: 243 YLDNNHFSGKIKDGLLRSSELMVLDISNN-HLSGHIPSWMGNFSNLYILSMSKNLLEGNI 301
N + + L LM ++ H W S L+ + L +
Sbjct: 232 STYNLKKLPTL-EKL---VALMEASLTYPSHCCAFAN-WRRQISELHPICNKSILRQ--- 283
Query: 302 PVQFNNLAILQILDISENNLS 322
V + A Q ++E+N S
Sbjct: 284 EVDYMTQARGQRSSLAEDNES 304
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+K+T +IPS++ +N L L +FS +E +++S N + I
Sbjct: 14 FLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70
Query: 560 PPQ----LTELHSLS 570
L +LH +
Sbjct: 71 EADVFSNLPKLHEIR 85
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 36/211 (17%), Positives = 76/211 (36%), Gaps = 15/211 (7%)
Query: 214 SLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNN 271
S + L+L + I + + NL + +Y+ + +++ + S++ ++I N
Sbjct: 32 STQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90
Query: 272 HLSGHIPSWM-GNFSNLYILSMSKNLLEGNIP--VQFNNLAILQILDISENN----LSGS 324
+I L L + L+ P + + I IL+I++N + +
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 325 MISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQI--NEHSNL 382
L + L L +N S+ F G+ L+ + L N + I +S
Sbjct: 150 AFQGLC-NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207
Query: 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413
L + + L L++L +
Sbjct: 208 SLLDVSQTSVTALPSKGLEHLKELIARNTWT 238
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 7e-10
Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 12/196 (6%)
Query: 236 LTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWM-GNFSNLYILSMS 293
L L H I + + + +S + + S N S + + +
Sbjct: 30 PPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR 88
Query: 294 KNLLEGNIPVQ-FNNLAILQILDISENNLS--GSMISTLNLSSVEHLYLQSNALGGSIPN 350
I L +L+ L I L + + L + N SIP
Sbjct: 89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 351 TIFRG--SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ--LRKL 406
F+G + TL L +N F + + L A+ L N I
Sbjct: 149 NAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207
Query: 407 SIMDLSHNRLNGSIPA 422
S++D+S + ++P+
Sbjct: 208 SLLDVSQTSVT-ALPS 222
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 25/186 (13%), Positives = 62/186 (33%), Gaps = 11/186 (5%)
Query: 70 QLKVLSLP-NCNLGVIPNFLLHQ-FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN 127
+ + + + L + + + + ++++ + + L+ L+ L + N
Sbjct: 56 NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115
Query: 128 SFSGFQLTSAQHG---LISLDISSNNFTGKLPQNMGIVLPK-LDCMNISKNSFEGNIPSS 183
F + + L+I+ N + +P N L + + N F ++
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGY 174
Query: 184 IGKMQGLRLLDVSSNKFAGELSQSPVTNCFS-LEWLQLSNNNFDGQIFPNYVNLTRLLFL 242
L + ++ NK+ + + +S L +S + P+ L L L
Sbjct: 175 AFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV--TALPSKG-LEHLKEL 231
Query: 243 YLDNNH 248
N
Sbjct: 232 IARNTW 237
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 44/237 (18%), Positives = 83/237 (35%), Gaps = 52/237 (21%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRL--FSFCSLANLSKLEVFQ----LSME 54
+ L I +NL ++ + + + +L SF +L+ ++ +E+ ++
Sbjct: 38 LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID 97
Query: 55 ADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN--FLLHQFNLKYLDLSHNKLAGNFPTWL 112
D L+ LP LK L + N L + P+ + L+++ N + P
Sbjct: 98 PDALKE-----LP--LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150
Query: 113 LEN-NTKLEVLYLTNNSFSG-----FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKL 166
+ + L L NN F+ F T L ++ ++ N + +
Sbjct: 151 FQGLCNETLTLKLYNNGFTSVQGYAFNGTK----LDAVYLNKNKYLTVID---------- 196
Query: 167 DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNN 223
K++F G G LLDVS ++ P L+ L N
Sbjct: 197 ------KDAFGGVY-------SGPSLLDVSQTS----VTALPSKGLEHLKELIARNT 236
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 7e-12
Identities = 28/159 (17%), Positives = 62/159 (38%), Gaps = 8/159 (5%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
+L Y+ L++ + +E ++ L + N + + S L L I + T
Sbjct: 45 SLTYITLANINVTDLTG---IEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT 101
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
N+ L L ++IS ++ + +I + I + + +D+S N ++ P+
Sbjct: 102 SDKIPNLS-GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI--MPLKTL 158
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG 251
L+ L + + + + +L LY + G
Sbjct: 159 PELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 28/192 (14%), Positives = 65/192 (33%), Gaps = 9/192 (4%)
Query: 156 PQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL 215
N+ I + +M L + +++ + + ++
Sbjct: 12 QDNVNIPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVT---DLTGIEYAHNI 68
Query: 216 EWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSG 275
+ L ++N + + L+ L L + + L + L +LDIS++
Sbjct: 69 KDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126
Query: 276 HIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSV 334
I + + + + +S N +I L L+ L+I + + + + +
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHD--YRGIEDFPKL 183
Query: 335 EHLYLQSNALGG 346
LY S +GG
Sbjct: 184 NQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L + +T D + L ++ L++SH+ SI + L + S+DLS+N I
Sbjct: 93 LRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI 152
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P L L L ++ ++ +
Sbjct: 153 MP-LKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 26/155 (16%), Positives = 55/155 (35%), Gaps = 10/155 (6%)
Query: 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISNN 271
SL ++ L+N N + L ++N + + S L L I
Sbjct: 45 SLTYITLANINV--TDLTGIEYAHNIKDLTINNI----HATNYNPISGLSNLERLRIMGK 98
Query: 272 HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNL 331
++ + ++L +L +S + + +I + N L + +D+S N ++ L
Sbjct: 99 DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTL 158
Query: 332 SSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDN 366
++ L +Q + + I L L
Sbjct: 159 PELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 20/133 (15%), Positives = 48/133 (36%), Gaps = 8/133 (6%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+++ + + I+ L++LE L + +L+ L+ L + +S +
Sbjct: 73 INNIHATNY--NPISGLSNLERLRIMGKDVTSDKIP--NLSGLTSLTLLDIS-HSAHDDS 127
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+ ++ + L L LK L++ + + +E+ KL
Sbjct: 128 ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLN 184
Query: 121 VLYLTNNSFSGFQ 133
LY + + G +
Sbjct: 185 QLYAFSQTIGGKK 197
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 6e-09
Identities = 24/153 (15%), Positives = 56/153 (36%), Gaps = 10/153 (6%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
++ ++ + I +++ L + + ++ ++ LS LE ++ D+ K
Sbjct: 52 ANINVTDLTG--IEYAHNIKDLTINNIHAT----NYNPISGLSNLERLRIM-GKDVTSDK 104
Query: 62 IENCLPTFQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
I N L +L + + I + + +DLS+N + L+ +L+
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELK 162
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG 153
L + + ++ L L S G
Sbjct: 163 SLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 4e-08
Identities = 28/213 (13%), Positives = 61/213 (28%), Gaps = 62/213 (29%)
Query: 14 IANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKV 73
A + SL Y+ L + L +
Sbjct: 40 EAQMNSLTYITLANINVT-------DLTGIEYAH-------------------------- 66
Query: 74 LSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ 133
N+K L +++ P + + LE L + + +
Sbjct: 67 -------------------NIKDLTINNIHATNYNP---ISGLSNLERLRIMGKDVTSDK 104
Query: 134 LTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLR 191
+ + L LDIS + + + LPK++ +++S N +I + + L+
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAITDI-MPLKTLPELK 162
Query: 192 LLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224
L++ + + + L L +
Sbjct: 163 SLNIQFDGVH---DYRGIEDFPKLNQLYAFSQT 192
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 5e-08
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L +++ T + + I L N+ L + ++ + S L + LD+SH+ + I
Sbjct: 71 LTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128
Query: 560 PPQLTELHSLSKFDVSYN 577
++ L ++ D+SYN
Sbjct: 129 LTKINTLPKVNSIDLSYN 146
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 2e-06
Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 34/199 (17%)
Query: 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS 279
+ D P+ L L + + + + + L + ++N +++ +
Sbjct: 7 GLKASQDNVNIPD-STFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVT-DLTG 61
Query: 280 WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLY 338
+ N+ L+++ P + L+ L+ L I +++ I L L+S+ L
Sbjct: 62 -IEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118
Query: 339 LQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398
+ +A SI I + ++DL N I + L+
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYN-------GAITDIMPLK--------------- 156
Query: 399 QLCQLRKLSIMDLSHNRLN 417
L +L +++ + ++
Sbjct: 157 ---TLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+ L++ +T D+ + I NI L +++ + S L +E L + +
Sbjct: 49 ITLANINVT-DL-TGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDK 104
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDK 586
P L+ L SL+ D+S++ I K
Sbjct: 105 IPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 5e-05
Identities = 20/141 (14%), Positives = 51/141 (36%), Gaps = 8/141 (5%)
Query: 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQS 341
F + ++ + + L + ++ N++ ++ + +++ L + +
Sbjct: 21 TFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTD--LTGIEYAHNIKDLTINN 75
Query: 342 NALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLC 401
P I S LE L + ++ ++L L + + I ++
Sbjct: 76 IHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133
Query: 402 QLRKLSIMDLSHNRLNGSIPA 422
L K++ +DLS+N I
Sbjct: 134 TLPKVNSIDLSYNGAITDIMP 154
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 2e-10
Identities = 42/231 (18%), Positives = 85/231 (36%), Gaps = 21/231 (9%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
+L + ++ + N+ Q + L ++ N T
Sbjct: 25 ETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 81
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNC 212
P L L + + +N + ++ SS+ ++ L+ L + N + + + +
Sbjct: 82 DIKPLAN---LKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS---DINGLVHL 133
Query: 213 FSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISN 270
LE L L NN LT+L L L++N +I D L ++L L +S
Sbjct: 134 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLYLSK 187
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321
NH+S + + + NL +L + +NL + + ++ +L
Sbjct: 188 NHIS-DLRA-LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 2e-09
Identities = 39/247 (15%), Positives = 79/247 (31%), Gaps = 43/247 (17%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ ++ + L S++ + ++ K S + L + L+
Sbjct: 31 LKKKSVTDAVT--QNELNSIDQIIANNSDIK----SVQGIQYLPNVTKLFLN---GNKLT 81
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
I+ L L L + + + L LK L L HN ++ L + +LE
Sbjct: 82 DIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDING---LVHLPQLE 137
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
LYL NN + + S L +L + N + +I
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQIS--------------------------DI 171
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLL 240
+ + L+ L +S N + + +L+ L+L + + + NL
Sbjct: 172 -VPLAGLTKLQNLYLSKNHIS---DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227
Query: 241 FLYLDNN 247
+ +
Sbjct: 228 TVKNTDG 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 3e-09
Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 45/257 (17%)
Query: 113 LENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNIS 172
+ + L S + + + + + ++++
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-------------------- 59
Query: 173 KNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPN 232
S +G I + + L ++ NK P+ N +L WL L N + +
Sbjct: 60 --SVQG-----IQYLPNVTKLFLNGNKLT---DIKPLANLKNLGWLFLDENKV--KDLSS 107
Query: 233 YVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290
+L +L L L++N I D GL+ +L L + NN ++ + + + L L
Sbjct: 108 LKDLKKLKSLSLEHN----GISDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTL 161
Query: 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIP 349
S+ N + +I L LQ L +S+N++ S + L L +++ L L S
Sbjct: 162 SLEDNQIS-DIV-PLAGLTKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPI 217
Query: 350 NTIFRGSALETLDLRDN 366
N T+ D
Sbjct: 218 NHQSNLVVPNTVKNTDG 234
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 47/227 (20%), Positives = 90/227 (39%), Gaps = 25/227 (11%)
Query: 207 SPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELM 264
L + + N L + + +N+ IK G+ +
Sbjct: 18 FSDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNS----DIKSVQGIQYLPNVT 71
Query: 265 VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGS 324
L ++ N L+ I + N NL L + +N ++ ++ +L L+ L + N +S
Sbjct: 72 KLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGIS-- 125
Query: 325 MISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPH--QINEHSN 381
I+ L +L +E LYL +N + + + R + L+TL L DN +I + +
Sbjct: 126 DINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN----QISDIVPLAGLTK 179
Query: 382 LRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428
L+ L L N++ L L+ L +++L +NL+
Sbjct: 180 LQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLV 224
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 29/178 (16%), Positives = 66/178 (37%), Gaps = 19/178 (10%)
Query: 242 LYLDNNHFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
IK +E + ++ ++ + +++ + + + ++
Sbjct: 7 TITVPT----PIKQIFSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK- 59
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSAL 358
++ L + L ++ N L+ I L NL ++ L+L N + + + + L
Sbjct: 60 SVQ-GIQYLPNVTKLFLNGNKLT--DIKPLANLKNLGWLFLDENKVK-DLSS-LKDLKKL 114
Query: 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
++L L N I + L +L L N + L +L KL + L N++
Sbjct: 115 KSLSLEHNGI-SDING-LVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQI 168
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
+L +T + +L +I + +++ + S+ + L + L L+ NKL I
Sbjct: 29 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKLT-DI 83
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
P L L +L + N +
Sbjct: 84 KP-LANLKNLGWLFLDENKVK 103
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 52/211 (24%), Positives = 83/211 (39%), Gaps = 28/211 (13%)
Query: 167 DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
DC + + NIP+ + LD+ SNK + L L L L++N
Sbjct: 22 DCSSKKLTAIPSNIPAD------TKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKL- 73
Query: 227 GQIFPNYV--NLTRLLFLYLDNNHFS---GKIKDGLLRSSELMVLDISNNHLSGHIPSWM 281
Q P + L L L++ +N + D L L L + N L +P
Sbjct: 74 -QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQL---VNLAELRLDRNQLK-SLPP-- 126
Query: 282 GNF---SNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLSSVEH 336
F + L LS+ N L+ ++P F+ L L+ L + N L L+ ++
Sbjct: 127 RVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT 185
Query: 337 LYLQSNALGGSIPNTIFRG-SALETLDLRDN 366
L L +N L +P F L+ L L++N
Sbjct: 186 LKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 53.4 bits (129), Expect = 6e-08
Identities = 51/229 (22%), Positives = 81/229 (35%), Gaps = 57/229 (24%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLE--VFQLSMEADLL 58
+ SN+LS + LT L L L DNK L L +F
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNK-------------LQTLPAGIF--------- 81
Query: 59 QVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQ-FNLKYLDLSHNKLAGNFPTWLLENNT 117
L L+ L + + L +P + Q NL L L N+L + P + ++ T
Sbjct: 82 -----KELK--NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLT 133
Query: 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177
KL L L N +L S G+ F L L + + N +
Sbjct: 134 KLTYLSLGYN-----ELQSLPKGV---------FDK---------LTSLKELRLYNNQLK 170
Query: 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
+ K+ L+ L + +N+ + + + L+ LQL N +D
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQENPWD 218
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 14/127 (11%)
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SA 357
NIP + LD+ N LS L+ + LYL N L ++P IF+
Sbjct: 34 NIPAD------TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKN 86
Query: 358 LETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLC-QLRKLSIMDLSHNR 415
LETL + DN +P + + NL L L N L+ +P ++ L KL+ + L +N
Sbjct: 87 LETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNE 144
Query: 416 LNGSIPA 422
L S+P
Sbjct: 145 LQ-SLPK 150
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 4e-10
Identities = 48/192 (25%), Positives = 77/192 (40%), Gaps = 26/192 (13%)
Query: 166 LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF 225
L C + ++PS LLD+S N + ++ T +L L LS+N+
Sbjct: 23 LSCSKQQLPNVPQSLPSYT------ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL 76
Query: 226 DGQIFPNYV--NLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMG 282
+ + L +L L +NH + + L L VL + NNH+ +
Sbjct: 77 --NFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDR--N 130
Query: 283 NF---SNLYILSMSKNLLEGNIPVQ----FNNLAILQILDISENNLS---GSMISTLNLS 332
F + L L +S+N + PV+ N L L +LD+S N L + + L
Sbjct: 131 AFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAW 189
Query: 333 SVEHLYLQSNAL 344
LYL +N L
Sbjct: 190 VKNGLYLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 43/187 (22%), Positives = 69/187 (36%), Gaps = 31/187 (16%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFT 152
LDLSHN L+ W T L L L++N L ISS F
Sbjct: 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-----HLNF---------ISSEAFV 85
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNKFAGELSQSPVTN 211
+P L +++S N + + +Q L +L + +N + ++ +
Sbjct: 86 P---------VPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFED 134
Query: 212 CFSLEWLQLSNNN---FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGL--LRSSELMVL 266
L+ L LS N F ++ + L +L+ L L +N L L + L
Sbjct: 135 MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
Query: 267 DISNNHL 273
+ NN L
Sbjct: 195 YLHNNPL 201
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 48/184 (26%), Positives = 75/184 (40%), Gaps = 27/184 (14%)
Query: 260 SSELMVLDISNNHLSGHIPSWM-GNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDIS 317
S +LD+S+N+LS W +NL+ L +S N L I + F + L+ LD+S
Sbjct: 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96
Query: 318 ENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQ 375
N+L +L ++E L L +N + + F + L+ L L N Q
Sbjct: 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQN--------Q 147
Query: 376 INEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSR 435
I S L++ +L KL ++DLS N+L + L W
Sbjct: 148 I---SRFPVELIKD----------GNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194
Query: 436 YLSG 439
YL
Sbjct: 195 YLHN 198
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 6e-08
Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 17/129 (13%)
Query: 500 LDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 557
LDLSSN L + + LQ + L L +N + + +F ++ ++ L LS N+++
Sbjct: 93 LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS- 149
Query: 558 QIPPQ----LTELHSLSKFDVSYNDLSGPIPDKEQFSTFD--ESSYRGNLHLCGPPINKS 611
+ P + +L L D+S N L +P + + + L+L P+
Sbjct: 150 RFPVELIKDGNKLPKLMLLDLSSNKLKK-LPL----TDLQKLPAWVKNGLYLHNNPLECD 204
Query: 612 CTNLLELLE 620
C L +L
Sbjct: 205 C-KLYQLFS 212
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 40/181 (22%), Positives = 62/181 (34%), Gaps = 40/181 (22%)
Query: 1 MSSNQLSGILPSVI-ANLTSLEYLALYDNKFKGRLFSFCSLANLSKLE--VFQLSMEADL 57
+S N LS + LT+L L L N L+ + F +
Sbjct: 46 LSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-------------LNFISSEAFV-----PV 87
Query: 58 LQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENN 116
L+ L L + +L + FL L+ L L +N + E+
Sbjct: 88 -----------PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDM 135
Query: 117 TKLEVLYLTNNSFSG-----FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNI 171
+L+ LYL+ N S + + L+ LD+SSN KLP LP +
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL 194
Query: 172 S 172
Sbjct: 195 Y 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 31/137 (22%), Positives = 53/137 (38%), Gaps = 15/137 (10%)
Query: 292 MSKNLLE--GNIPVQFNNLAILQILDISENNLS--GSMISTLNLSSVEHLYLQSNALGGS 347
+ L ++P +LD+S NNLS + + L+++ L L N L
Sbjct: 26 SKQQLPNVPQSLPSY------TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-F 78
Query: 348 IPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRK 405
I + F L LDL N + + L LLL N++ + + +
Sbjct: 79 ISSEAFVPVPNLRYLDLSSN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQ 137
Query: 406 LSIMDLSHNRLNGSIPA 422
L + LS N+++ P
Sbjct: 138 LQKLYLSQNQIS-RFPV 153
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 2e-06
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 500 LDLSSNKLTGDIPSEI--CDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLN 556
LDLS N L+ + +E L N+H L LSHN L+ I +F + + LDLS N L+
Sbjct: 44 LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101
Query: 557 GQIPPQ-LTELHSLSKFDVSYNDLS 580
+ ++L +L + N +
Sbjct: 102 -TLDEFLFSDLQALEVLLLYNNHIV 125
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 36/141 (25%), Positives = 50/141 (35%), Gaps = 22/141 (15%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+S N L+ I + +L YL L N ++L LE L + + + V
Sbjct: 71 LSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT--LDEFLFSDLQALE--VLLLYNNHIVV 126
Query: 61 KIENCLP--TF----QLKVLSLPNCNLGVIPNFLLHQF----NLKYLDLSHNKLAGNFPT 110
+ F QL+ L L + P L+ L LDLS NKL P
Sbjct: 127 -----VDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL 180
Query: 111 WLLENNTKL--EVLYLTNNSF 129
L+ LYL NN
Sbjct: 181 TDLQKLPAWVKNGLYLHNNPL 201
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 1e-09
Identities = 58/331 (17%), Positives = 110/331 (33%), Gaps = 70/331 (21%)
Query: 68 TFQLKVLSLPNCNLG-----VIPNFLLHQFNLKYLDLSHNKLAGNFPTWL---LENNTKL 119
F ++ SL + + LL ++K + LS N + WL + + L
Sbjct: 3 RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 62
Query: 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN 179
E+ ++ F+G L L + PKL + +S N+F
Sbjct: 63 EIAEFSDI-FTGRVKDEIPEALRLL------------LQALLKCPKLHTVRLSDNAFGPT 109
Query: 180 ----IPSSIGKMQGLRLLDVSSNKF----AGELSQ--------SPVTNCFSLEWLQLSNN 223
+ + K L L + +N ++++ N L + N
Sbjct: 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169
Query: 224 NFD-------GQIFPNYVNLTRLLFLYLDNNHFSGK-----IKDGLLRSSELMVLDISNN 271
+ + F ++ L + + N + + +GL EL VLD+ +N
Sbjct: 170 RLENGSMKEWAKTFQSHRLLHT---VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN 226
Query: 272 HLSG----HIPSWMGNFSNLYILSMSKNLL--EGNIPV-----QFNNLAILQILDISENN 320
+ + + ++ NL L ++ LL G V + N+ LQ L + N
Sbjct: 227 TFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNE 285
Query: 321 LSGSMISTL------NLSSVEHLYLQSNALG 345
+ + TL + + L L N
Sbjct: 286 IELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 53.2 bits (128), Expect = 1e-07
Identities = 50/318 (15%), Positives = 101/318 (31%), Gaps = 78/318 (24%)
Query: 10 LPSVIANLTSLEYLALYDNKF--KGRLFSFCSLANLSKLEVFQLS-MEADLLQVKIENCL 66
+ +V+ S++ + L N + + ++A+ LE+ + S + ++ +I L
Sbjct: 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83
Query: 67 PTF--------QLKVLSLPNCNLG-----VIPNFLLHQFNLKYLDLSHNK---------- 103
+L + L + G + +FL L++L L +N
Sbjct: 84 RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 143
Query: 104 --LAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQH---------GLISLDISSNNFT 152
L +N L + N S + L ++ + N
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRNRLEN---GSMKEWAKTFQSHRLLHTVKMVQNGIR 200
Query: 153 GKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF----AGELSQSP 208
+ GI E + + Q L++LD+ N F + L+ +
Sbjct: 201 PE-----GI---------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA- 239
Query: 209 VTNCFSLEWLQLSNNNFD-------GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS- 260
+ + +L L L++ F N+ L L L N L
Sbjct: 240 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVI 298
Query: 261 ----SELMVLDISNNHLS 274
+L+ L+++ N S
Sbjct: 299 DEKMPDLLFLELNGNRFS 316
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 40/255 (15%), Positives = 71/255 (27%), Gaps = 60/255 (23%)
Query: 9 ILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPT 68
+L + L + L DN F D L +
Sbjct: 85 LLLQALLKCPKLHTVRLSDNAFGPTAQEPL----------------IDFLSK---HT--- 122
Query: 69 FQLKVLSLPNCNLG--------------VIPNFLLHQFNLKYLDLSHNKLAGNFPTWL-- 112
L+ L L N LG + + L+ + N+L
Sbjct: 123 -PLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181
Query: 113 -LENNTKLEVLYLTNNSFS--GFQLTSAQ-----HGLISLDISSNNFTGKLPQNMGIVL- 163
+++ L + + N G + + L LD+ N FT + I L
Sbjct: 182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALK 241
Query: 164 --PKLDCMNISKNSFEGNIPSSIGKM------QGLRLLDVSSNKF----AGELSQSPVTN 211
P L + ++ +++ GL+ L + N+ L
Sbjct: 242 SWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEK 301
Query: 212 CFSLEWLQLSNNNFD 226
L +L+L+ N F
Sbjct: 302 MPDLLFLELNGNRFS 316
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 2e-09
Identities = 47/317 (14%), Positives = 98/317 (30%), Gaps = 54/317 (17%)
Query: 70 QLKVLSLPNCNLG-----VIPNFLLHQF-NLKYLDLSHNKL----AGNFPTWLLENNTKL 119
+ L+L +LG + L N+ L+LS N L + L +
Sbjct: 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTI 111
Query: 120 EVLYLTNNSFS-------GFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCM--- 169
VL L N FS ++ + SL++ N+ K + +L +
Sbjct: 112 TVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS 171
Query: 170 -NISKNSFEGNIPSSIGKM-----QGLRLLDVSSNKF----AGELSQSPVTNCFSLEWLQ 219
N+ N+ + + K + LD+S+N EL+ + + L
Sbjct: 172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN 231
Query: 220 LSNNNFDGQIFPNYVNL----TRLLFLYLDNNHFSGK-------IKDGLLRSSELMVLDI 268
L N G N L L +YLD + + +++++D
Sbjct: 232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291
Query: 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST 328
+ + + + +S + E + +L ++ ++ + ++
Sbjct: 292 NGKEI-----------HPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN- 339
Query: 329 LNLSSVEHLYLQSNALG 345
+ L
Sbjct: 340 -IPDELRESIQTCKPLL 355
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 55/350 (15%), Positives = 106/350 (30%), Gaps = 91/350 (26%)
Query: 112 LLENNTKLEVLYLTNNSFS-------GFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLP 164
+ L L+ N+ + + SL++S N+ K + +L
Sbjct: 17 FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76
Query: 165 KLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF----AGELSQSPVTNCFSLEWLQL 220
+ + L++S N + EL ++ F++ L L
Sbjct: 77 AIPA--------------------NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDL 116
Query: 221 SNNNFD-------GQIFPNYVNLTRLLFLYLDNNHFSGK----IKDGLLR-SSELMVLDI 268
N+F Q F N + L L N K + L + + L++
Sbjct: 117 GWNDFSSKSSSEFKQAFSN--LPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL 174
Query: 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST 328
N+L+ + ++K L + LD+S N L +
Sbjct: 175 RGNNLA-----------SKNCAELAKFLASIPAS--------VTSLDLSANLLGLKSYAE 215
Query: 329 L------NLSSVEHLYLQSNALGGSIPNTIFRG----SALETLDLRDNYFFGRIPHQINE 378
L + V L L N L G + L+T+ L + +
Sbjct: 216 LAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD--------IVKN 267
Query: 379 HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428
S + L ++K+ ++D + ++ S I+NL+
Sbjct: 268 MSKEQCKALG---------AAFPNIQKIILVDKNGKEIHPSHSIPISNLI 308
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 35/246 (14%), Positives = 68/246 (27%), Gaps = 44/246 (17%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVK 61
++ + P L + L + S LS ++ F +
Sbjct: 5 RPTPINQVFP--DPGLANAVKQNLGKQS----VTDLVSQKELSGVQNFNGD---NSNIQS 55
Query: 62 IENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121
+ LK L L + + + L L+ L ++ N+L + L
Sbjct: 56 LAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNG----IPSACLSR 110
Query: 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP 181
L+L NN L L I +N +I
Sbjct: 111 LFLDNNELRDTDSLIHLKNLEILSIRNNKLK--------------------------SI- 143
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241
+G + L +LD+ N+ + +T + W+ L+ + L
Sbjct: 144 VMLGFLSKLEVLDLHGNEIT---NTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNT 200
Query: 242 LYLDNN 247
+ +
Sbjct: 201 VKDPDG 206
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 31/181 (17%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ ++ ++ L+ ++ ++ + S + + L+ LS
Sbjct: 26 LGKQSVTDLVS--QKELSGVQNFNGDNSNIQ----SLAGMQFFTNLKELHLS-------- 71
Query: 61 KIENCLPTF-------QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLL 113
N + +L+ LS+ L + + L L L +N+L L
Sbjct: 72 --HNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDTDS---L 124
Query: 114 ENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173
+ LE+L + NN + L LD+ N T L K++ ++++
Sbjct: 125 IHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTR---LKKVNWIDLTG 181
Query: 174 N 174
Sbjct: 182 Q 182
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 40/201 (19%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GLLRSSELMVLDISNNHLSGHI 277
+ Q+FP+ L + L + D S + + N+++ +
Sbjct: 3 IQRPTPINQVFPDP-GLANAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQ-SL 56
Query: 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHL 337
M F+NL L +S N + ++ +L L+ L ++ N L ++ + + + L
Sbjct: 57 AG-MQFFTNLKELHLSHNQIS-DLS-PLKDLTKLEELSVNRNRLKN--LNGIPSACLSRL 111
Query: 338 YLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPH--QINEHSNLRALLLRGNYLQGP 395
+L +N L +++ LE L +R+N ++ + S L L L GN +
Sbjct: 112 FLDNNEL--RDTDSLIHLKNLEILSIRNN----KLKSIVMLGFLSKLEVLDLHGNEITNT 165
Query: 396 IPHQLCQLRKLSIMDLSHNRL 416
L +L+K++ +DL+ +
Sbjct: 166 GG--LTRLKKVNWIDLTGQKC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 39/202 (19%), Positives = 79/202 (39%), Gaps = 28/202 (13%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF 200
+ ++ + T + Q L + N ++ + ++ + + L+ L +S N+
Sbjct: 21 AVKQNLGKQSVTDLVSQKE---LSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQ- 74
Query: 201 AGELSQ-SPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD--GL 257
+S SP+ + LE L ++ N + + L L+LDNN +++D L
Sbjct: 75 ---ISDLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNN----ELRDTDSL 124
Query: 258 LRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDIS 317
+ L +L I NN L I +G S L +L + N + + L + +D++
Sbjct: 125 IHLKNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITNTGGLT--RLKKVNWIDLT 180
Query: 318 ENNLSGSMISTLNLSSVEHLYL 339
+ LY+
Sbjct: 181 GQK-----CVNEPVKYQPELYI 197
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 4e-06
Identities = 37/188 (19%), Positives = 62/188 (32%), Gaps = 21/188 (11%)
Query: 182 SSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241
+ ++ ++ N+N Q T L
Sbjct: 13 FPDPGLANAVKQNLGKQSVT---DLVSQKELSGVQNFNGDNSNI--QSLAGMQFFTNLKE 67
Query: 242 LYLDNNHFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299
L+L +N +I D L ++L L ++ N L ++ + L L + N L
Sbjct: 68 LHLSHN----QISDLSPLKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRD 120
Query: 300 NIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSAL 358
+L L+IL I N L I L LS +E L L N + + + R +
Sbjct: 121 TDS--LIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEI-TNTGG-LTRLKKV 174
Query: 359 ETLDLRDN 366
+DL
Sbjct: 175 NWIDLTGQ 182
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 71/470 (15%), Positives = 152/470 (32%), Gaps = 119/470 (25%)
Query: 51 LSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGN--- 107
++++ L K++ + F++ L+L NCN P +L + N + +
Sbjct: 166 VALDV-CLSYKVQCKMD-FKIFWLNLKNCN---SPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 108 FPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLD-ISSNNFTGKLPQNMGIVLPKL 166
L ++ + E+ L + ++ L+ L + +
Sbjct: 221 SNIKLRIHSIQAELRRL-------LKSKPYENCLLVLLNVQNAK-----------AWNAF 262
Query: 167 D--C--MNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222
+ C + ++ + +S + + L+ V + +L
Sbjct: 263 NLSCKILLTTRFK------QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK-YL---- 311
Query: 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSEL---------MVLDISNNHL 273
+ Q P V T L + + I+DGL +++ S N L
Sbjct: 312 -DCRPQDLPREVLTTNPRRLSI----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 274 SGHIPSWM-GNFSNLYILSMSKNLLEGNIPVQFNNLAILQIL--DISENNLSGSMISTLN 330
P+ F L + + +IP +L ++ D+ ++++ +
Sbjct: 367 E---PAEYRKMFDRLSVFP--PSA---HIPTI-----LLSLIWFDVIKSDVMVVVNKLHK 413
Query: 331 LSSVE-----------HLYLQSN-------ALGGSIPN--TIFRGSALETL--DLRDNYF 368
S VE +YL+ AL SI + I + + L D YF
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 369 FGRIPH------QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422
+ I H + R + L +L+ +K+ + N +GSI
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLE----------QKIRHDSTAWNA-SGSILN 522
Query: 423 CITNLLFWK--------VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSL 464
+ L F+K R ++ + + + I + Y ++++L
Sbjct: 523 TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIAL 572
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 56/427 (13%), Positives = 131/427 (30%), Gaps = 110/427 (25%)
Query: 303 VQFNNLAILQIL------DISENNLSGSMISTLNLSSVEHLYLQSNALGGSI-------- 348
Q+ IL + + ++ S L+ ++H+ + +A+ G++
Sbjct: 14 HQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 349 -PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRG-----NYLQG-------- 394
+ + +E + LR NY F + I +++ R + L
Sbjct: 74 KQEEMVQ-KFVEEV-LRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129
Query: 395 --PIPHQLCQLRKLSIMDLSHNR---LNG-----------------SIPACITNLLFW-K 431
+LR+ ++++L + ++G + + +FW
Sbjct: 130 NVSRLQPYLKLRQ-ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYE-SYK 490
+ + V+ ++ + I + S S + + YE
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL- 247
Query: 491 GVILD------YMAGLDLSSNKL--TGDIPSEICD-LQNIHGLNLSHNFLSGSIPESFSN 541
++L +LS L T ++ D L ++S + S ++
Sbjct: 248 -LVLLNVQNAKAWNAFNLSCKILLTTRF--KQVTDFLSAATTTHISLDHHSMTLTPD--- 301
Query: 542 LKMIESLDLSHNKLN---GQIPPQLTELHSLSKFDVSYNDLSGPIPD--KEQFSTFDESS 596
E L L+ +P ++ + LS I + ++ +T+D
Sbjct: 302 ----EVKSLLLKYLDCRPQDLPREVLTTNPRR--------LSI-IAESIRDGLATWDNWK 348
Query: 597 YRGNLHLCGPPINKSCTNLLELLETSSKGAEDESAVDMVAFYWS---FVASCVTVMLGLL 653
+ C L ++E+S + + F S + LL
Sbjct: 349 HVN------------CDKLTTIIESS---LNVLEPAEYRKMFDRLSVFPPS-AHIPTILL 392
Query: 654 AILWVNP 660
+++W +
Sbjct: 393 SLIWFDV 399
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 55.1 bits (132), Expect = 4e-08
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L L+ LT + + L + L+LSHN L ++P + + L+ +E L S N L +
Sbjct: 446 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
+ L L + + N L
Sbjct: 502 DG-VANLPRLQELLLCNNRLQ 521
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 34/251 (13%), Positives = 68/251 (27%), Gaps = 37/251 (14%)
Query: 74 LSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ 133
L L +LS K LE+ +L+ L N
Sbjct: 331 CVLLKDRPECWCRDSATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTI 388
Query: 134 LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLL 193
+ + + + + + ++ ++ F + +R+L
Sbjct: 389 ILLMRA--LDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446
Query: 194 DVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKI 253
++ + + L LS+N + P L L L +N +
Sbjct: 447 HLAHKDLT---VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDN----AL 498
Query: 254 K--DGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAIL 311
+ DG+ L L + NN L + + L L
Sbjct: 499 ENVDGVANLPRLQELLLCNNRLQ--------QSAAIQPLVSCPRL--------------- 535
Query: 312 QILDISENNLS 322
+L++ N+L
Sbjct: 536 VLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 4e-07
Identities = 40/236 (16%), Positives = 80/236 (33%), Gaps = 32/236 (13%)
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLL 240
+ L ++S K + QS + +C L+ L+ N I L LL
Sbjct: 342 CRDSATDEQLFRCELSVEKS--TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
+ +FS + LD + ++++ +L ++ L
Sbjct: 400 YEKETLQYFSTLKA---VDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-V 455
Query: 301 IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
+ L ++ LD+S N L + L +E L NAL ++ + L+
Sbjct: 456 LC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG-VANLPRLQE 512
Query: 361 LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
L L +N ++ + + ++ L +L +++L N L
Sbjct: 513 LLLCNN--------RLQQSAAIQ---------------PLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 4e-06
Identities = 29/152 (19%), Positives = 48/152 (31%), Gaps = 12/152 (7%)
Query: 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV------KIE 63
L L L D L S L + + +L + +
Sbjct: 398 LLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLC 457
Query: 64 NCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLY 123
+ + L L + L +P L L+ L S N L N + N +L+ L
Sbjct: 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVDG--VANLPRLQELL 514
Query: 124 LTNN---SFSGFQLTSAQHGLISLDISSNNFT 152
L NN + Q + L+ L++ N+
Sbjct: 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 48.2 bits (114), Expect = 6e-06
Identities = 33/228 (14%), Positives = 66/228 (28%), Gaps = 24/228 (10%)
Query: 43 LSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHN 102
+ + D + + QL L V+ + L L+ L+ +
Sbjct: 323 TGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENK 382
Query: 103 K---------LAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG 153
A + + E L + + + L+ + +
Sbjct: 383 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYAD 442
Query: 154 KLP---QNMGIV-------LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGE 203
+ + L + +++S N +P ++ ++ L +L S N
Sbjct: 443 VRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-- 499
Query: 204 LSQSPVTNCFSLEWLQLSNNNFDG-QIFPNYVNLTRLLFLYLDNNHFS 250
+ V N L+ L L NN V+ RL+ L L N
Sbjct: 500 -NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-06
Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 29/228 (12%)
Query: 212 CFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNN 271
L L++ + L + +D +L ++S
Sbjct: 301 LCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRD-SATDEQLFRCELSVE 359
Query: 272 HLSGHIPSWMGNFSNLYILS----------------MSKNLLEGNIPVQFNNLAILQILD 315
+ + S + + L L + L E F+ L + +
Sbjct: 360 KST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 418
Query: 316 ISENNLSGSM------ISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFF 369
+ + S + + + V L+L L + + + + + LDL N
Sbjct: 419 AAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR 476
Query: 370 GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
+P + L L N L+ + + L +L + L +NRL
Sbjct: 477 -ALPPALAALRCLEVLQASDNALEN-VDG-VANLPRLQELLLCNNRLQ 521
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 242 LYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNF---SNLYILSMSKNLL 297
+ L+ N I G +L +D+SNN +S + F +L L + N +
Sbjct: 37 IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAP--DAFQGLRSLNSLVLYGNKI 92
Query: 298 EGNIPVQ-FNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG 355
+P F L LQ+L ++ N ++ + +L ++ L L N L +I F
Sbjct: 93 T-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSP 150
Query: 356 -SALETLDLRDN 366
A++T+ L N
Sbjct: 151 LRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-06
Identities = 27/142 (19%), Positives = 47/142 (33%), Gaps = 38/142 (26%)
Query: 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLE--VFQLSMEADLLQ 59
N + I P + L + L +N+ +S+L F L+
Sbjct: 40 EQNTIKVIPPGAFSPYKKLRRIDLSNNQ-------------ISELAPDAF------QGLR 80
Query: 60 VKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQ-FNLKYLDLSHNKLAGNFPTWLLENNTK 118
L L L + +P L F+L+ L L+ NK+ ++
Sbjct: 81 ----------SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHN 129
Query: 119 LEVLYLTNNSFSGFQLTSAQHG 140
L +L L +N +L + G
Sbjct: 130 LNLLSLYDN-----KLQTIAKG 146
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 27/142 (19%), Positives = 54/142 (38%), Gaps = 17/142 (11%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHG-------LISLD 145
+ + L N + P KL + L+NN Q++ L SL
Sbjct: 33 TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNN-----QISELAPDAFQGLRSLNSLV 86
Query: 146 ISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI-GKMQGLRLLDVSSNKFAGEL 204
+ N T +LP+++ L L + ++ N + + L LL + NK +
Sbjct: 87 LYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQ-TI 143
Query: 205 SQSPVTNCFSLEWLQLSNNNFD 226
++ + +++ + L+ N F
Sbjct: 144 AKGTFSPLRAIQTMHLAQNPFI 165
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQ 558
+ L N + P + + ++LS+N +S + +F L+ + SL L NK+ +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKIT-E 94
Query: 559 IPPQL-TELHSLSKFDVSYNDLS 580
+P L L SL ++ N ++
Sbjct: 95 LPKSLFEGLFSLQLLLLNANKIN 117
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 27/133 (20%), Positives = 56/133 (42%), Gaps = 10/133 (7%)
Query: 218 LQLSNNNFDGQIFPNYV--NLTRLLFLYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLS 274
L+L+NN F + + L +L + NN + I++G S + + +++N L
Sbjct: 37 LRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLE 94
Query: 275 GHIPSWM-GNFSNLYILSMSKNLLEGNIPV-QFNNLAILQILDISENNLSGSMISTL-NL 331
+ M +L L + N + + F L+ +++L + +N ++ L
Sbjct: 95 N-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 332 SSVEHLYLQSNAL 344
S+ L L +N
Sbjct: 153 HSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 44.3 bits (105), Expect = 5e-05
Identities = 24/140 (17%), Positives = 51/140 (36%), Gaps = 26/140 (18%)
Query: 2 SSNQLSGILPS-VIANLTSLEYLALYDNKFK----GRLFSFCSLANLSKLEVFQLSMEAD 56
++N+ + + + + L L + +NK G +F + ++++
Sbjct: 40 NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEG---AFEGASGVNEI---------L 87
Query: 57 LLQVKIENCLP--TF----QLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFP 109
L ++EN + F LK L L + + + N +++ L L N++
Sbjct: 88 LTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVA 145
Query: 110 TWLLENNTKLEVLYLTNNSF 129
+ L L L N F
Sbjct: 146 PGAFDTLHSLSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 7e-04
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 500 LDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNG 557
L L++N+ T + I L + +N S+N ++ I E +F + + L+ N+L
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95
Query: 558 QIPPQL-TELHSLSKFDVSYNDLS 580
+ ++ L SL + N ++
Sbjct: 96 -VQHKMFKGLESLKTLMLRSNRIT 118
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 1e-06
Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 61 KIENCLPTF-QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119
KIE F L+ LSL N L + N L LK L+LS N++ G L E L
Sbjct: 40 KIEGLTAEFVNLEFLSLINVGLISVSN-LPKLPKLKKLELSENRIFGGLD-MLAEKLPNL 97
Query: 120 EVLYLTNNSFSGFQ 133
L L+ N
Sbjct: 98 THLNLSGNKLKDIS 111
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 26/111 (23%), Positives = 44/111 (39%), Gaps = 4/111 (3%)
Query: 211 NCFSLEWLQLSNNNFD-GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS 269
++ L L N + G+I L FL L N + L + +L L++S
Sbjct: 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELS 79
Query: 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISEN 319
N + G + NL L++S N L+ ++ L L+ LD+
Sbjct: 80 ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LD + G I + N+ L+L + L S+ + L ++ L+LS N++ G +
Sbjct: 31 LDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
+L +L+ ++S N L
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLK 108
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 232 NYVNLTRLLFLYLDNNHFS-GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290
+ L LDN + GKI+ L L + N L + + + L L
Sbjct: 19 RNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKL 76
Query: 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLS--GSMISTLNLSSVEHLYLQSN 342
+S+N + G + + L L L++S N L ++ L ++ L L +
Sbjct: 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 6e-04
Identities = 29/134 (21%), Positives = 45/134 (33%), Gaps = 22/134 (16%)
Query: 73 VLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLA--GNFPTWLLENNTKLEVLYLTNNSFS 130
VL N G I NL++L L + L N P KL+ L L+ N
Sbjct: 30 VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLP-----KLPKLKKLELSENRIF 84
Query: 131 GFQ--LTSAQHGLISLDISSNNFTGKLPQNMGIV-----LPKLDCMNISKN---SFEGNI 180
G L L L++S N +++ + L L +++ +
Sbjct: 85 GGLDMLAEKLPNLTHLNLSGNKL-----KDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139
Query: 181 PSSIGKMQGLRLLD 194
S + L LD
Sbjct: 140 ESVFKLLPQLTYLD 153
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 1e-06
Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 9/114 (7%)
Query: 504 SNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ 562
+ D + +N+ L + + + L + +L + + L + P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPD 74
Query: 563 -LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL 615
LS+ ++S+N L T S + L L G P++ SC
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWK-----TVQGLSLQ-ELVLSGNPLHCSCALR 122
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 48.6 bits (115), Expect = 4e-06
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 2/81 (2%)
Query: 500 LDLSSNKLTGDIPSE-ICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558
L + + + + + L + L + + L P++F + L+LS N L
Sbjct: 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-S 94
Query: 559 IPPQLTELHSLSKFDVSYNDL 579
+ + + SL + +S N L
Sbjct: 95 LSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 7e-06
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 3/86 (3%)
Query: 261 SELMVLDISNNHLSGHIPSWM-GNFSNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISE 318
L L I N H+ L L++ K+ L + F+ L L++S
Sbjct: 31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89
Query: 319 NNLSGSMISTLNLSSVEHLYLQSNAL 344
N L T+ S++ L L N L
Sbjct: 90 NALESLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 9e-05
Identities = 15/101 (14%), Positives = 29/101 (28%), Gaps = 4/101 (3%)
Query: 78 NCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSA 137
+ L NL L + + + + L +L L + + +
Sbjct: 17 RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 138 QH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
L L++S N L + L + +S N
Sbjct: 77 HFTPRLSRLNLSFNALE-SLSWKT-VQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 3e-04
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 165 KLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224
L C + + + + L L + + + L + L L + +
Sbjct: 12 GLRCTR--DGAL--DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67
Query: 225 FDGQIFPN-YVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHL 273
+ P+ + RL L L N + ++ L L +S N L
Sbjct: 68 LR-FVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 7e-04
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 12/110 (10%)
Query: 314 LDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRI 372
L + + S+ ++ LY+++ + RG L L + + +
Sbjct: 13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS----GL 68
Query: 373 PHQINEH-----SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417
+ L L L N L+ + + Q L + LS N L+
Sbjct: 69 -RFVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 12/105 (11%)
Query: 51 LSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHN---KLAGN 107
+ + A+L++ + + + L L + VI N +D S N KL G
Sbjct: 2 VKLTAELIE-QAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG- 59
Query: 108 FPTWLLENNTKLEVLYLTNNSFSGFQLTSAQH--GLISLDISSNN 150
+L+ L + NN Q L L +++N+
Sbjct: 60 -----FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDL K+ I + L ++ S N + + + F L+ +++L +++N++
Sbjct: 24 LDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIG 80
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
L L++ ++ N L
Sbjct: 81 EGLDQALPDLTELILTNNSLV 101
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 23/111 (20%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 210 TNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS 269
TN L L I L + + +N K+ DG L L ++
Sbjct: 16 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVN 72
Query: 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF-NNLAILQILDISEN 319
NN + +L L ++ N L + +L L L I N
Sbjct: 73 NNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 22/114 (19%), Positives = 41/114 (35%), Gaps = 5/114 (4%)
Query: 231 PNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290
Y N R L L I++ + +D S+N + + + L L
Sbjct: 13 AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDGF-PLLRRLKTL 69
Query: 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSG-SMISTL-NLSSVEHLYLQSN 342
++ N + L L L ++ N+L + L +L S+ +L + N
Sbjct: 70 LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-05
Identities = 43/237 (18%), Positives = 78/237 (32%), Gaps = 25/237 (10%)
Query: 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTF 69
L ++ N SL + + D + + F + ANL + L+ + + + K N +
Sbjct: 212 LETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPE-KYMNLVFPR 270
Query: 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNN-S 128
+L L L +P ++ LDL + L L++ LEVL N
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330
Query: 129 FSGFQ-LTSAQHGLISLDISSNNFTGKLPQNMGIV-----------LPKL-----DCMNI 171
G + L L L I + G+V +L +I
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390
Query: 172 SKNSFEGNIPSSIGKMQGLRLLDVS-----SNKFAGELSQSPVTNCFSLEWLQLSNN 223
+ S E I + + + RL+ + ++ +S + C L
Sbjct: 391 TNESLES-IGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 2e-05
Identities = 28/130 (21%), Positives = 51/130 (39%), Gaps = 40/130 (30%)
Query: 3 SNQLSGI--LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ I + + ++ L + ++LAL N + +++LS +E
Sbjct: 31 HGMIPPIEKMDATLSTLKACKHLALSTNNIE-------KISSLSGME------------- 70
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHN---KLAGNFPTWLLENNT 117
L++LSL + I N L+ L +S+N L+G +E
Sbjct: 71 ---------NLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG------IEKLV 115
Query: 118 KLEVLYLTNN 127
L VLY++NN
Sbjct: 116 NLRVLYMSNN 125
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 3e-05
Identities = 45/165 (27%), Positives = 74/165 (44%), Gaps = 27/165 (16%)
Query: 216 EWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS---GKIKDGLLRSSELMVLDISNNH 272
E L L + + LT+L +L LD N + D L +EL L ++NN
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL---TELGTLGLANNQ 94
Query: 273 LSGHIPSWMGNF---SNLYILSMSKNLLEGNIPVQ-FNNLAILQILDISENNLSGSMIST 328
L+ +P G F + L L + N L+ +P F+ L L+ L ++ N L +
Sbjct: 95 LAS-LPL--GVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQL-----QS 145
Query: 329 L------NLSSVEHLYLQSNALGGSIPNTIF-RGSALETLDLRDN 366
+ L++++ L L +N L S+P+ F R L+T+ L N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQL-QSVPHGAFDRLGKLQTITLFGN 189
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 29/87 (33%), Positives = 52/87 (59%), Gaps = 4/87 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L L N+ T +P E+ + +++ ++LS+N +S +SFSN+ + +L LS+N+L I
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR-CI 93
Query: 560 PPQLTE-LHSLSKFDVSYNDLSGPIPD 585
PP+ + L SL + ND+S +P+
Sbjct: 94 PPRTFDGLKSLRLLSLHGNDISV-VPE 119
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 47/365 (12%), Positives = 95/365 (26%), Gaps = 71/365 (19%)
Query: 37 FCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFN--L 94
C + NL LE Q + L LP ++L + + L
Sbjct: 19 GCPIKNLDALENAQAIKK--KLGKLGRQVLP--PSELLDHLFFHYEFQNQRFSAEVLSSL 74
Query: 95 KYLDLSHNKL--AGNFPTW------LLENNTKLEVLYLTNNSFS---GFQLTSAQHGLIS 143
+ L+L+ ++ L L+ + L + L
Sbjct: 75 RQLNLAGVRMTPVK----CTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARK 130
Query: 144 LDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF--- 200
L + N+ + +++ +L C + L +S+N
Sbjct: 131 LGLQLNSLGPEACKDLRDLLLHDQC--------------------QITTLRLSNNPLTAA 170
Query: 201 -AGELSQSPVTNCFSLEWLQLSNNNFDGQ--------IFPNYVNLTRLLFLYLDNNHFSG 251
L + N S+ L L + + + N +L L + N
Sbjct: 171 GVAVLMEGLAGNT-SVTHLSLLHTGLGDEGLELLAAQLDRN----RQLQELNVAYNGAGD 225
Query: 252 K----IKDGLLRSSELMVLDISNNHLS--GHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305
+ L +L + N LS G + + +L EG
Sbjct: 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT---AV 282
Query: 306 NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG----SALETL 361
+ + + ++ N S + L+ + P + + L
Sbjct: 283 SEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEGEVRAL 342
Query: 362 DLRDN 366
+
Sbjct: 343 LEQLG 347
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 242 LYLDNNHFS-GKIKDGLLRSSELMVLDISNNHLS--GHIPSWMGNFSNLYILSMSKNLLE 298
L LDN+ + GK++ EL L N L+ ++P + L L +S N +
Sbjct: 22 LVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLP----KLNKLKKLELSDNRVS 77
Query: 299 GNIPVQFNNLAILQILDISENNLSG-SMISTL-NLSSVEHLYLQSN 342
G + V L L++S N + S I L L +++ L L +
Sbjct: 78 GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 17/81 (20%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LD S + G + + + + L+ + L+ SI + L ++ L+LS N+++G +
Sbjct: 24 LDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGL 80
Query: 560 PPQLTELHSLSKFDVSYNDLS 580
+ +L+ ++S N +
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIK 101
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
Query: 211 NCFSLEWLQLSNNNFD-GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS 269
++ L L N+ + G++ L FL N + I L + ++L L++S
Sbjct: 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELS 72
Query: 270 NNHLSGHIPSWMGNFSNLYILSMSKNLLEG-NIPVQFNNLAILQILDISEN 319
+N +SG + NL L++S N ++ + L L+ LD+
Sbjct: 73 DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF-NLKYLDLSHNKLAGNFPTWLLENNTKL 119
I N +LK L L + + L + NL +L+LS NK+ L+ L
Sbjct: 56 SIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENL 115
Query: 120 EVLYLTNN 127
+ L L N
Sbjct: 116 KSLDLFNC 123
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 44/181 (24%), Positives = 65/181 (35%), Gaps = 41/181 (22%)
Query: 167 DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
DC + S IP++ ++L + N+ +L FD
Sbjct: 25 DCRSKRHASVPAGIPTN------AQILYLHDNQIT-----------------KLEPGVFD 61
Query: 227 GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLL-RSSELMVLDISNNHLSGHIPSWMGNF- 284
L L LYL +N + G+ ++L VLD+ N L+ +PS F
Sbjct: 62 S--------LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV-LPS--AVFD 109
Query: 285 --SNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQS 341
+L L M N L +P L L L + +N L LSS+ H YL
Sbjct: 110 RLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168
Query: 342 N 342
N
Sbjct: 169 N 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 9e-04
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 26/136 (19%)
Query: 3 SNQLSGILPSVIANLTSLEYLALYDNKFKGRLFS-----FCSLANLSKLEVFQLSMEADL 57
NQ++ + P V +L +L+ L L N+ L + F SL L+ L++ +
Sbjct: 49 DNQITKLEPGVFDSLINLKELYLGSNQ----LGALPVGVFDSLTQLTVLDLGTNQLTV-- 102
Query: 58 LQVKIENCLPT--F----QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTW 111
LP+ F LK L + L +P + +L +L L N+L + P
Sbjct: 103 --------LPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK-SIPHG 153
Query: 112 LLENNTKLEVLYLTNN 127
+ + L YL N
Sbjct: 154 AFDRLSSLTHAYLFGN 169
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 3e-04
Identities = 28/222 (12%), Positives = 66/222 (29%), Gaps = 23/222 (10%)
Query: 211 NCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISN 270
SL+ + + ++G+ + + + ++N + + +IS
Sbjct: 105 KLPSLKQITIGXWGYEGE------DCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISW 158
Query: 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN 330
+ + L L + NL L+I+ + I +
Sbjct: 159 IEQ-VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSD 217
Query: 331 LSSVEHLYL---QSNALGGSIPNTIF------RGSALETLDLRDNYFFGRIPHQINEH-- 379
L ++E L L + N R L+ L + D + E
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDI 277
Query: 380 -SNLRALLLRGNYLQG----PIPHQLCQLRKLSIMDLSHNRL 416
L + + L + + +++ L +++ +N L
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 35/160 (21%), Positives = 76/160 (47%), Gaps = 12/160 (7%)
Query: 266 LDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM 325
++ ++ + +++ + + + ++ ++ L ++ L + N L +
Sbjct: 24 ANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DI 78
Query: 326 ISTLNLSSVEHLYLQSNALGGSIPNTIFRG-SALETLDLRDNYFFGRIPHQINEH-SNLR 383
+ L+++ +L L N L S+PN +F + L+ L L +N +P + + +NL
Sbjct: 79 SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLT 136
Query: 384 ALLLRGNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPA 422
L L N LQ +P + +L L+ +DLS+N+L S+P
Sbjct: 137 YLNLAHNQLQS-LPKGVFDKLTNLTELDLSYNQLQ-SLPE 174
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 10/107 (9%)
Query: 242 LYLDNNHFSGKIKDGLLRS-SELMVLDISNNHLSGHIPSWMGNF---SNLYILSMSKNLL 297
L L++N DGL L+ L++ N L+G I F S++ L + +N +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTG-IEP--NAFEGASHIQELQLGENKI 90
Query: 298 EGNIPV-QFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSN 342
+ I F L L+ L++ +N +S M + +L+S+ L L SN
Sbjct: 91 K-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 688 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.98 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.92 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.91 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.91 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.91 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.9 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.89 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.85 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.84 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.83 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.82 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.82 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.8 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.79 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.78 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.77 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.77 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.76 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.75 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.75 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.74 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.74 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.74 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.73 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.73 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.72 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.72 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.71 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.71 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.71 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.69 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.69 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.68 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.68 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.67 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.66 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.65 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.64 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.63 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.62 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.61 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.61 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.58 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.57 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.53 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.52 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.51 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.49 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.47 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.42 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.4 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.4 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.33 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.3 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.2 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.18 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.18 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.86 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.85 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.53 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.52 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.44 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.42 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.95 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 97.93 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.59 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.07 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 96.97 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.85 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-73 Score=646.18 Aligned_cols=609 Identities=32% Similarity=0.450 Sum_probs=485.6
Q ss_pred CCCCCCcccCch--hhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccc----------------
Q 005619 1 MSSNQLSGILPS--VIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKI---------------- 62 (688)
Q Consensus 1 Ls~n~~~~~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~---------------- 62 (688)
|++|.++|.+|. .++++++|++|+|++|.+.+ .+|...+.++++|++|++++|.+.+..+.
T Consensus 107 Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~L 185 (768)
T 3rgz_A 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI 185 (768)
T ss_dssp CCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEEC-CSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEEC
T ss_pred CCCCcCCCcCCChHHHhCCCCCCEEECcCCccCC-cCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEEC
Confidence 456667766666 66677777777777766654 33322224455555555555544322111
Q ss_pred --------cCCCCCcceeEEECCCCCCCC-cchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC
Q 005619 63 --------ENCLPTFQLKVLSLPNCNLGV-IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ 133 (688)
Q Consensus 63 --------~~~~~l~~L~~L~l~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 133 (688)
..+..+++|++|++++|.+.. +|. +.++++|++|++++|.+++.+|..+ .++++|++|++++|.+++..
T Consensus 186 s~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~ 263 (768)
T 3rgz_A 186 SGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPI 263 (768)
T ss_dssp CSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESC
T ss_pred CCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCcc
Confidence 113567788888888888844 454 8888889999999888887777654 58889999999999887654
Q ss_pred CCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCC
Q 005619 134 LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF 213 (688)
Q Consensus 134 ~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 213 (688)
....+++|++|++++|.+++.+|..++..+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|...+..++
T Consensus 264 ~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~ 343 (768)
T 3rgz_A 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343 (768)
T ss_dssp CCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCT
T ss_pred CccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCC
Confidence 44478899999999999998999988765699999999999999999999999999999999999999899988788999
Q ss_pred CCCEEEcccCcCCCcCcccccCCC-CCCEEeccCCcCCCcccccccC--CCCCCEEEccCCcCCCCCchhhhCCcCCcEE
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNLT-RLLFLYLDNNHFSGKIKDGLLR--SSELMVLDISNNHLSGHIPSWMGNFSNLYIL 290 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 290 (688)
+|++|++++|.+++..|..+..++ +|++|++++|.+.+..+..+.. +++|++|++++|.+++.+|..+..+++|++|
T Consensus 344 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 423 (768)
T 3rgz_A 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSL 423 (768)
T ss_dssp TCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEE
T ss_pred CCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEE
Confidence 999999999999988899998887 9999999999999888887766 7899999999999999999999999999999
Q ss_pred EccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCC
Q 005619 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFF 369 (688)
Q Consensus 291 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~ 369 (688)
++++|.+++.+|..+..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++.+|..+..+++|++|++++|+++
T Consensus 424 ~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 424 HLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 999999999999999999999999999999998888777 8999999999999999999999999999999999999999
Q ss_pred CcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccc
Q 005619 370 GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGV 449 (688)
Q Consensus 370 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 449 (688)
+.+|.+++.+++|++|++++|++++.+|..++.+++|+.|++++|+++|.+|.++.+....... ....+..........
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 582 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAA-NFIAGKRYVYIKNDG 582 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCC-STTCSCEEEEEECCS
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhh-hcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999988765422110 000000000000000
Q ss_pred ccccccccc-ceecccCCCCCCCC--CcceEEEeeeccccc---cccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 450 ADIRNYYNS-TVQLSLDGIDGRSL--GTQVEVNFMTKNRYE---SYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 450 ~~~~~~~~~-~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
.. ..... ...+...+...... ...........+.+. ......++.|+.|||++|+++|.+|..|+.+++|+.
T Consensus 583 ~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 660 (768)
T 3rgz_A 583 MK--KECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 660 (768)
T ss_dssp CC--TTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCE
T ss_pred cc--ccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCE
Confidence 00 00000 00000000000000 000000000000000 001133678999999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHL 603 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l 603 (688)
|+|++|+++|.+|..|+++++|++|||++|+++|.+|..+.++++|++||+++|+++|.+|.+++|.++...+|.||+.+
T Consensus 661 L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~L 740 (768)
T 3rgz_A 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGL 740 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEE
T ss_pred EeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcc
Q 005619 604 CGPPINKSCTNLL 616 (688)
Q Consensus 604 ~~~p~~~~C~~~~ 616 (688)
||.|+. .|....
T Consensus 741 cg~~l~-~C~~~~ 752 (768)
T 3rgz_A 741 CGYPLP-RCDPSN 752 (768)
T ss_dssp ESTTSC-CCCSCC
T ss_pred cCCCCc-CCCCCc
Confidence 999987 897543
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-64 Score=576.12 Aligned_cols=537 Identities=31% Similarity=0.417 Sum_probs=306.5
Q ss_pred hhhcCCCCCCEEeCCCCcCcccccC-HHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chh--
Q 005619 12 SVIANLTSLEYLALYDNKFKGRLFS-FCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNF-- 87 (688)
Q Consensus 12 ~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~-- 87 (688)
..|+++++|++|||++|.+++ .+| ...++++++|++|++++|.+.+..+...+.++++|++|++++|.+... |..
T Consensus 94 ~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 94 SGFKCSASLTSLDLSRNSLSG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCTTCCEEECCSSEEEE-EGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred hhhccCCCCCEEECCCCcCCC-cCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 345555555555555555544 233 114555555555555555444443333334455555555555555222 222
Q ss_pred -hhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCC-CCCCCCCCcCEEEccCCCCCCCCChhhhhcCCC
Q 005619 88 -LLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGF-QLTSAQHGLISLDISSNNFTGKLPQNMGIVLPK 165 (688)
Q Consensus 88 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~ 165 (688)
+.++++|++|++++|.+++..+. ..+++|++|++++|.+++. +....+++|++|++++|.+++.+|..+. .+++
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~-~l~~ 248 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS-TCTE 248 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTT-TCSS
T ss_pred hhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHh-cCCC
Confidence 44555555555555555544332 3455555555555555432 1122445555555555555544444443 4555
Q ss_pred CCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEecc
Q 005619 166 LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245 (688)
Q Consensus 166 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 245 (688)
|++|++++|.+++.+|.. .+++|++|++++|.+.+.+|...+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus 249 L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~ 326 (768)
T 3rgz_A 249 LKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALS 326 (768)
T ss_dssp CCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECC
T ss_pred CCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECC
Confidence 555555555555444432 455555555555555555554443334555555555555555555555555555555555
Q ss_pred CCcCCCccccc-ccCCCCCCEEEccCCcCCCCCchhhhCCc-CCcEEEccccccCCCCcccccC--CCCCcEEEccCCcC
Q 005619 246 NNHFSGKIKDG-LLRSSELMVLDISNNHLSGHIPSWMGNFS-NLYILSMSKNLLEGNIPVQFNN--LAILQILDISENNL 321 (688)
Q Consensus 246 ~n~l~~~~~~~-~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~--l~~L~~L~Ls~n~l 321 (688)
+|.+.+.+|.. +..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+.++..+.. +++|++|++++|.+
T Consensus 327 ~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 327 SNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp SSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 55555444433 55555555555555555555555555544 5555555555555444444443 44555555555555
Q ss_pred cccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhh
Q 005619 322 SGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQL 400 (688)
Q Consensus 322 ~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 400 (688)
++..+..+ .+++|++|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+..+++|++|++++|++++.+|..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 54444444 55555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEe
Q 005619 401 CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNF 480 (688)
Q Consensus 401 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 480 (688)
..+++|++|++++|++++.+|.++.+++. ++...
T Consensus 487 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~----------------------------------------------L~~L~ 520 (768)
T 3rgz_A 487 SNCTNLNWISLSNNRLTGEIPKWIGRLEN----------------------------------------------LAILK 520 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTT----------------------------------------------CCEEE
T ss_pred hcCCCCCEEEccCCccCCcCChHHhcCCC----------------------------------------------CCEEE
Confidence 55555555555555555555555544321 11111
Q ss_pred eeccccc-ccc--ccccccccEEEccCCcccccCC---------------------------------------------
Q 005619 481 MTKNRYE-SYK--GVILDYMAGLDLSSNKLTGDIP--------------------------------------------- 512 (688)
Q Consensus 481 ~~~~~~~-~~~--~~~l~~L~~LdLs~N~l~~~~p--------------------------------------------- 512 (688)
+..+.+. ..+ ...+++|+.||+++|.++|.+|
T Consensus 521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (768)
T 3rgz_A 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIR 600 (768)
T ss_dssp CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCC
T ss_pred CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccccccccc
Confidence 1111111 000 0124555566666665555554
Q ss_pred -------------------------hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC
Q 005619 513 -------------------------SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH 567 (688)
Q Consensus 513 -------------------------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 567 (688)
..++.+++|+.|+|++|+++|.+|..++++++|+.|+|++|+++|.+|..+++++
T Consensus 601 ~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 601 SEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred chhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 4455578899999999999999999999999999999999999999999999999
Q ss_pred CCCEEecCCCcCccCCCCC-cccCCcCccccCCCC
Q 005619 568 SLSKFDVSYNDLSGPIPDK-EQFSTFDESSYRGNL 601 (688)
Q Consensus 568 ~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~ 601 (688)
+|++|||++|+++|.+|.. ..+..+......+|.
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 9999999999999999976 455666666666665
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-59 Score=536.77 Aligned_cols=568 Identities=21% Similarity=0.233 Sum_probs=367.6
Q ss_pred CCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC
Q 005619 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL 81 (688)
Q Consensus 2 s~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 81 (688)
++++++.+ |. -.++|++|||++|.+++ ..+ ..|.++++|++|++++|.....+++.+|.++++|++|++++|.+
T Consensus 12 s~~~L~~v-P~---lp~~l~~LdLs~N~i~~-i~~-~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l 85 (844)
T 3j0a_A 12 RFCNLTQV-PQ---VLNTTERLLLSFNYIRT-VTA-SSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKI 85 (844)
T ss_dssp SCCCSSCC-CS---SCTTCCEEEEESCCCCE-ECS-SSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCC
T ss_pred cCCCCCCC-CC---CCCCcCEEECCCCcCCc-cCh-hHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcC
Confidence 45667765 43 45799999999999986 333 57999999999999999888888788899999999999999999
Q ss_pred CCc-chhhhCCCCCCEEECCCCcCCCCCchH-HhhCCCCCcEEEccCCCCCCCCCC---CCCCCcCEEEccCCCCCCCCC
Q 005619 82 GVI-PNFLLHQFNLKYLDLSHNKLAGNFPTW-LLENNTKLEVLYLTNNSFSGFQLT---SAQHGLISLDISSNNFTGKLP 156 (688)
Q Consensus 82 ~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~ls~n~~~~~~~ 156 (688)
..+ |..+.++++|++|++++|.+++.+|.. .+.++++|++|++++|.+++...+ ..+++|++|++++|.+++..+
T Consensus 86 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~ 165 (844)
T 3j0a_A 86 YFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCE 165 (844)
T ss_dssp CEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCS
T ss_pred cccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCH
Confidence 766 888999999999999999998766543 356899999999999999886543 478999999999999987777
Q ss_pred hhhhhcC--CCCCEEEccCCCCCcccchhhhcCCC------CCEEEccCCcCccccCchhhcCC--CCCCEEEcccC---
Q 005619 157 QNMGIVL--PKLDCMNISKNSFEGNIPSSIGKMQG------LRLLDVSSNKFAGELSQSPVTNC--FSLEWLQLSNN--- 223 (688)
Q Consensus 157 ~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~------L~~L~L~~n~l~~~~~~~~~~~l--~~L~~L~L~~n--- 223 (688)
..+. .+ ++|+.|++++|.+.+..|..++.+++ |++|++++|.+.+.++....... ..++.+.++.+
T Consensus 166 ~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~ 244 (844)
T 3j0a_A 166 HELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG 244 (844)
T ss_dssp GGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred HHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence 7665 45 89999999999999888777766665 99999999988766665443221 24444444421
Q ss_pred ------cCCCcCcccccCC--CCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccc
Q 005619 224 ------NFDGQIFPNYVNL--TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295 (688)
Q Consensus 224 ------~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 295 (688)
.+.......|.++ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus 245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESC
T ss_pred ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCC
Confidence 1122222223222 44555555555555544555555555555555555555555555555555555555555
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCch
Q 005619 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPH 374 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 374 (688)
.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++ ++ .+++|+.|++++|+++. +|.
T Consensus 325 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~~N~l~~-l~~ 398 (844)
T 3j0a_A 325 LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLSGNKLVT-LPK 398 (844)
T ss_dssp CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEESCCCCC-CCC
T ss_pred CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccCCCCccc-ccc
Confidence 5555555555555555555555555555444444 45555555555555542 11 14455555555555532 222
Q ss_pred hhhcCCCccEEeccCCcCCCCC-chhhcCCCCCCEEEccCCcCccccchhh-hhhhhcccCCcccccceeEEeccccccc
Q 005619 375 QINEHSNLRALLLRGNYLQGPI-PHQLCQLRKLSIMDLSHNRLNGSIPACI-TNLLFWKVGSRYLSGFVMVVMDLGVADI 452 (688)
Q Consensus 375 ~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (688)
. ..+++.|++++|++++.. +..+..+++|+.|++++|++++..+... ..+. .+..++++.+.+
T Consensus 399 ~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~------------~L~~L~Ls~N~l 463 (844)
T 3j0a_A 399 I---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP------------SLEQLFLGENML 463 (844)
T ss_dssp C---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCT------------TCCBCEEESCCC
T ss_pred c---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCC------------ccccccCCCCcc
Confidence 1 234555555555554321 1223345555555555555543222100 0000 000000000000
Q ss_pred ccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCc
Q 005619 453 RNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
...+. .... ...+ ..+++|+.|||++|++++..|..|..+++|+.|+|++|+++
T Consensus 464 ~~~~~----------~~~~--------------~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 517 (844)
T 3j0a_A 464 QLAWE----------TELC--------------WDVF--EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517 (844)
T ss_dssp SSSCC----------SCCC--------------SSCS--SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred ccccc----------cccc--------------hhhh--cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC
Confidence 00000 0000 0000 22678999999999999999999999999999999999999
Q ss_pred cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCCCCCCCC
Q 005619 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 612 (688)
Q Consensus 533 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p~~~~C 612 (688)
+..|..+. ++|+.|||++|++++.+|..+. +|++|++++|++.|.|+.. .|......++..+||.|....|
T Consensus 518 ~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~~----~f~~~~~~~~~~~~~~~~~~~C 588 (844)
T 3j0a_A 518 VLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECELS----TFINWLNHTNVTIAGPPADIYC 588 (844)
T ss_dssp SCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSCC----SHHHHHHHTTTTTCCCGGGCCC
T ss_pred ccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCcccccccH----HHHHHHHhcCcccccccccCcc
Confidence 87777776 8999999999999999988764 7889999999999999743 2222223456778888888899
Q ss_pred CCcccccccCCCCCCccccc
Q 005619 613 TNLLELLETSSKGAEDESAV 632 (688)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~ 632 (688)
..|....+....+.....|.
T Consensus 589 ~~p~~~~g~~l~~~~~~~C~ 608 (844)
T 3j0a_A 589 VYPDSFSGVSLFSLSTEGCD 608 (844)
T ss_dssp SSCSSSCSCCTTTCCCCCC-
T ss_pred CCchhhCCCccccCccccCC
Confidence 87765544443333333443
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-57 Score=513.57 Aligned_cols=540 Identities=21% Similarity=0.221 Sum_probs=328.2
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
|++|+++++.+..|.++++|++|+|++|.+++ ..| ..+.++++|++|++++|.+. .++..+|.++++|++|++++|+
T Consensus 32 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 32 LTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEP-ELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp CCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCT-THHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSC
T ss_pred CCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCH-HHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCCc
Confidence 46677777766677777777777777777765 333 56777777777777777644 4444457777777777777777
Q ss_pred CCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC----CCCCCcCEEEccCCCCCCCC
Q 005619 81 LGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT----SAQHGLISLDISSNNFTGKL 155 (688)
Q Consensus 81 l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~L~~L~ls~n~~~~~~ 155 (688)
+..+| ..+.++++|++|++++|.+++..+.. +.++++|++|++++|.+++.... ..+++|++|++++|.+++..
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 187 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence 76654 46677777777777777776544443 34677777777777777664321 13467777777777776444
Q ss_pred ChhhhhcC---------------------------CCCCEEEccCCCCCcccchhhhcCCC--CCEEEccCCcCccccCc
Q 005619 156 PQNMGIVL---------------------------PKLDCMNISKNSFEGNIPSSIGKMQG--LRLLDVSSNKFAGELSQ 206 (688)
Q Consensus 156 ~~~~~~~l---------------------------~~L~~L~l~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~ 206 (688)
|..+. .+ ++|++|++++|.+++..|.++..++. |++|++++|.+. .++.
T Consensus 188 ~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~ 265 (680)
T 1ziw_A 188 PGCFH-AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGN 265 (680)
T ss_dssp TTGGG-GSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECT
T ss_pred hhhhh-hhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCc
Confidence 43332 22 34555555555555555555555433 666666666555 2333
Q ss_pred hhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCC-----ccc----ccccCCCCCCEEEccCCcCCCCC
Q 005619 207 SPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG-----KIK----DGLLRSSELMVLDISNNHLSGHI 277 (688)
Q Consensus 207 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~----~~~~~~~~L~~L~Ls~n~l~~~~ 277 (688)
..+..+++|+.|++++|.+++..+..+.++++|+.|++++|...+ .+| ..+..+++|++|++++|.+.+..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~ 345 (680)
T 1ziw_A 266 DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIK 345 (680)
T ss_dssp TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCC
T ss_pred ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCC
Confidence 334555666666666666655555555566666666665543322 111 13455556666666666666555
Q ss_pred chhhhCCcCCcEEEccccccCC--CCcccccCC--CCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCc-hh
Q 005619 278 PSWMGNFSNLYILSMSKNLLEG--NIPVQFNNL--AILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIP-NT 351 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~-~~ 351 (688)
+..|..+++|++|++++|.+.. .....|..+ ++|+.|++++|++++..+..+ .+++|++|++++|.+.+.++ ..
T Consensus 346 ~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 425 (680)
T 1ziw_A 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425 (680)
T ss_dssp TTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGG
T ss_pred hhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccc
Confidence 5555666666666666554321 111222222 355666666666655555444 55666666666666654443 44
Q ss_pred ccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC--CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhh
Q 005619 352 IFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ--GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429 (688)
Q Consensus 352 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 429 (688)
+..+++|++|++++|++.+..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|++++..|..+..+..
T Consensus 426 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEK 505 (680)
T ss_dssp GTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccc
Confidence 555566666666666665555555666666666666666554 345556666666666666666666544444433221
Q ss_pred cccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccc-----------cccccccc
Q 005619 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYK-----------GVILDYMA 498 (688)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~L~ 498 (688)
++...+..+.+..+. ...++.|+
T Consensus 506 ----------------------------------------------L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 506 ----------------------------------------------LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp ----------------------------------------------CCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred ----------------------------------------------cCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 111111111111110 12367788
Q ss_pred EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCC-CCCCCCEEecCCC
Q 005619 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLT-ELHSLSKFDVSYN 577 (688)
Q Consensus 499 ~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~ls~N 577 (688)
.|+|++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|++|++++|
T Consensus 540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N 619 (680)
T 1ziw_A 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN 619 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence 888888888855556788888888888888888877777788888888888888888887777676 6788888888888
Q ss_pred cCccCCCCCcccCCc
Q 005619 578 DLSGPIPDKEQFSTF 592 (688)
Q Consensus 578 ~l~~~~p~~~~~~~~ 592 (688)
++.|.|+...+|..|
T Consensus 620 ~~~c~c~~~~~~~~~ 634 (680)
T 1ziw_A 620 PFDCTCESIAWFVNW 634 (680)
T ss_dssp CCCBCCCCCSSEECC
T ss_pred CcccCCccHHHHHHH
Confidence 888888753444444
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-55 Score=495.39 Aligned_cols=551 Identities=20% Similarity=0.212 Sum_probs=389.2
Q ss_pred CCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC
Q 005619 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL 81 (688)
Q Consensus 2 s~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 81 (688)
++++++. +|..+. +++++|+|++|.+++ ++...|.++++|++|++++|.+.. +.+..+.++++|++|++++|.+
T Consensus 12 s~~~L~~-ip~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l 85 (680)
T 1ziw_A 12 SHLKLTQ-VPDDLP--TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNEL 85 (680)
T ss_dssp CSSCCSS-CCSCSC--TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCC
T ss_pred CCCCccc-cccccC--CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCcc
Confidence 4566665 455554 799999999999986 555679999999999999998654 4445688899999999999999
Q ss_pred CCcch-hhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC--CCCCCcCEEEccCCCCCCCCChh
Q 005619 82 GVIPN-FLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT--SAQHGLISLDISSNNFTGKLPQN 158 (688)
Q Consensus 82 ~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~~L~~L~ls~n~~~~~~~~~ 158 (688)
..+|. .+..+++|++|++++|+++ .++...+.++++|++|++++|.+++.... ..+++|++|++++|.+++..+..
T Consensus 86 ~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 86 SQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred CccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 98876 6899999999999999998 45544457999999999999999876433 37899999999999999554444
Q ss_pred hh-hcCCCCCEEEccCCCCCcccchhhhcCCC---------------------------CCEEEccCCcCccccCchhhc
Q 005619 159 MG-IVLPKLDCMNISKNSFEGNIPSSIGKMQG---------------------------LRLLDVSSNKFAGELSQSPVT 210 (688)
Q Consensus 159 ~~-~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---------------------------L~~L~L~~n~l~~~~~~~~~~ 210 (688)
+. ..+++|++|++++|.+++..|..+..+++ |++|++++|.+.+..+. .+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-TFL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-TTG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-Hhh
Confidence 32 24689999999999999888887776654 55555555555533332 233
Q ss_pred CCC--CCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCC-----CCch----
Q 005619 211 NCF--SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSG-----HIPS---- 279 (688)
Q Consensus 211 ~l~--~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~-----~~~~---- 279 (688)
.++ +|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+ .+|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 333 36666666666666555666666666666666666666666666666666666666554332 1221
Q ss_pred hhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccc--cccc---ccCccceEeeecCccccCCchhccC
Q 005619 280 WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM--ISTL---NLSSVEHLYLQSNALGGSIPNTIFR 354 (688)
Q Consensus 280 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~---~~~~L~~L~L~~n~l~~~~~~~~~~ 354 (688)
.+..+++|++|++++|.+.+..+..|.++++|++|++++|.+.... ...+ ..++|+.|++++|++++..|..+..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 4556666666666666666666666666666777776666543221 1111 2246666777777666666666666
Q ss_pred CCCccEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCc--cccchhhhhhhhcc
Q 005619 355 GSALETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN--GSIPACITNLLFWK 431 (688)
Q Consensus 355 ~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~--~~~p~~l~~l~~~~ 431 (688)
+++|+.|++++|++.+.+| ..+..+++|++|++++|++.+..+..+..+++|+.|++++|.++ +.+|..+.++.
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~--- 480 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLR--- 480 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCT---
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCC---
Confidence 6677777777776655443 55666667777777777766666666666677777777776665 34454443322
Q ss_pred cCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccc---cccccccEEEccCCccc
Q 005619 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKG---VILDYMAGLDLSSNKLT 508 (688)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~L~~LdLs~N~l~ 508 (688)
.++...+..+.+...+. ..++.|+.|++++|.++
T Consensus 481 -------------------------------------------~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~ 517 (680)
T 1ziw_A 481 -------------------------------------------NLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517 (680)
T ss_dssp -------------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCG
T ss_pred -------------------------------------------CCCEEECCCCCCCcCChhhhccccccCEEeCCCCCcc
Confidence 12222333333333322 23788999999999998
Q ss_pred ccCC--------hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCc
Q 005619 509 GDIP--------SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLS 580 (688)
Q Consensus 509 ~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~ 580 (688)
+..+ ..|..+++|+.|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|++|++++|+++
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 597 (680)
T 1ziw_A 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597 (680)
T ss_dssp GGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred ccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCC
Confidence 6532 24789999999999999999655567999999999999999999888888899999999999999999
Q ss_pred cCCCCCc--ccCCcCccccCCCCCCCCC
Q 005619 581 GPIPDKE--QFSTFDESSYRGNLHLCGP 606 (688)
Q Consensus 581 ~~~p~~~--~~~~~~~~~~~~n~~l~~~ 606 (688)
+..|... .+..+....+.+|+..|+.
T Consensus 598 ~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 598 SVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp BCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ccChhHhcccccccCEEEccCCCcccCC
Confidence 8766431 4556666667777766653
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-56 Score=497.01 Aligned_cols=500 Identities=22% Similarity=0.220 Sum_probs=419.2
Q ss_pred CchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhh
Q 005619 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFL 88 (688)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~ 88 (688)
+|..+. +++++|+|++|.+++ ++...|.++++|++|++++|.+.. +.+.+|.++++|++|++++|.+..+ |..+
T Consensus 27 iP~~l~--~~l~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 101 (606)
T 3t6q_A 27 IPGTLP--NSTECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETAL 101 (606)
T ss_dssp CCTTSC--TTCCEEECTTCCCSE--ECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECTTTT
T ss_pred CcCCCC--CcCcEEEccCCccCc--CChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccChhhh
Confidence 455554 479999999999986 433689999999999999997654 5555789999999999999999665 7788
Q ss_pred hCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC--CCCCcCEEEccCCCCCCCCChhhhhcCCCC
Q 005619 89 LHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS--AQHGLISLDISSNNFTGKLPQNMGIVLPKL 166 (688)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L 166 (688)
.++++|++|++++|++++..+. .+.++++|++|++++|.+++...+. .+++|++|++++|.++ .++...+..+++|
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 179 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFI-PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQA 179 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGS-CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTC
T ss_pred cccccccEeeccccCcccCCcc-hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhccc
Confidence 9999999999999999843233 3568999999999999998864333 6789999999999998 4444444479999
Q ss_pred C--EEEccCCCCCcccchhhhcCCCCCEEEccCCcCc-------------------------cccCchhhcCCC--CCCE
Q 005619 167 D--CMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFA-------------------------GELSQSPVTNCF--SLEW 217 (688)
Q Consensus 167 ~--~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~~l~--~L~~ 217 (688)
+ +|++++|.+++..|..+.. ..|++|++++|... ..++...+..+. +|+.
T Consensus 180 ~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~ 258 (606)
T 3t6q_A 180 TNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVES 258 (606)
T ss_dssp CSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEE
T ss_pred ceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeE
Confidence 9 8999999999877766544 67888988877411 022222333332 6889
Q ss_pred EEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccccc
Q 005619 218 LQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLL 297 (688)
Q Consensus 218 L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l 297 (688)
|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+
T Consensus 259 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 337 (606)
T 3t6q_A 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337 (606)
T ss_dssp EECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred EEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence 999999999888888999999999999999998 6777888999999999999999988888899999999999999988
Q ss_pred CCCCc-ccccCCCCCcEEEccCCcCcccc--cccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCc
Q 005619 298 EGNIP-VQFNNLAILQILDISENNLSGSM--ISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP 373 (688)
Q Consensus 298 ~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 373 (688)
.+.++ ..+..+++|++|++++|.+.+.. +..+ .+++|++|++++|.+.+..|..+..+++|++|++++|++.+..+
T Consensus 338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 417 (606)
T 3t6q_A 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417 (606)
T ss_dssp CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence 86554 45889999999999999998775 4444 88999999999999988888889999999999999999987655
Q ss_pred h-hhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc---hhhhhhhhcccCCcccccceeEEecccc
Q 005619 374 H-QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP---ACITNLLFWKVGSRYLSGFVMVVMDLGV 449 (688)
Q Consensus 374 ~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 449 (688)
. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++..+ ..+
T Consensus 418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~------------------------- 472 (606)
T 3t6q_A 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL------------------------- 472 (606)
T ss_dssp CCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGG-------------------------
T ss_pred chhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhh-------------------------
Confidence 4 48889999999999999998888899999999999999999875221 111
Q ss_pred cccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCC
Q 005619 450 ADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHN 529 (688)
Q Consensus 450 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N 529 (688)
..++.|+.|++++|++++..|..|+.+++|+.|+|++|
T Consensus 473 ------------------------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 510 (606)
T 3t6q_A 473 ------------------------------------------QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510 (606)
T ss_dssp ------------------------------------------GGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred ------------------------------------------ccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence 12678999999999999999999999999999999999
Q ss_pred cCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC
Q 005619 530 FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586 (688)
Q Consensus 530 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 586 (688)
++++.+|..+++++.| .|+|++|++++.+|..+..+++|++|++++|++.|.|+..
T Consensus 511 ~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 511 RLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred ccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 9999999999999999 9999999999999999999999999999999999998753
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-55 Score=487.29 Aligned_cols=534 Identities=19% Similarity=0.169 Sum_probs=355.9
Q ss_pred CCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCC
Q 005619 3 SNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLG 82 (688)
Q Consensus 3 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 82 (688)
+++++.+ |..+. ++|++|+|++|.+++ ++...|.++++|++|++++|.+. .+++.+|.++++|++|++++|.+.
T Consensus 20 ~~~l~~i-p~~~~--~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 20 DQKLSKV-PDDIP--SSTKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TSCCSSC-CTTSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCC
T ss_pred CCCcccC-CCCCC--CCcCEEECCCCCcCE--eChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCccc
Confidence 3444433 43333 677777777777764 33346777777777777777654 344445777777777777777775
Q ss_pred Cc-chhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC---CCCCcCEEEccCCCCCCCCChh
Q 005619 83 VI-PNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS---AQHGLISLDISSNNFTGKLPQN 158 (688)
Q Consensus 83 ~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~ 158 (688)
.+ |..+.++++|++|++++|.+++..+.. +.++++|++|++++|.+++...+. .+++|++|++++|++++..+..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFP-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSC-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccc-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 55 666777777777777777776333233 457777777777777776543332 5677777777777777444433
Q ss_pred hhhcCCC----CCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEc--------------
Q 005619 159 MGIVLPK----LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL-------------- 220 (688)
Q Consensus 159 ~~~~l~~----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L-------------- 220 (688)
+. .+++ +++|++++|.+++..+..+... +|++|++++|.+.+......+..++.|+.+++
T Consensus 173 ~~-~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~ 250 (606)
T 3vq2_A 173 LQ-FLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250 (606)
T ss_dssp TH-HHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred hh-hhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccccc
Confidence 32 3333 3467777777775544444433 67777777776654444444555666655554
Q ss_pred -------------------ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhh
Q 005619 221 -------------------SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM 281 (688)
Q Consensus 221 -------------------~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 281 (688)
..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+ +.+|. +
T Consensus 251 ~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp~-~ 325 (606)
T 3vq2_A 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFPT-L 325 (606)
T ss_dssp CGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCCC-C
T ss_pred ChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-ccccc-C
Confidence 34445544444 6677777777777777753 44 666777777777777777 45663 3
Q ss_pred hCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccc--cccc-ccCccceEeeecCccccCCchhccCCCCc
Q 005619 282 GNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM--ISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSAL 358 (688)
Q Consensus 282 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L 358 (688)
.+++|++|++++|...+.. .+..+++|++|++++|.+++.. +..+ .+++|++|++++|.++ .+|..+..+++|
T Consensus 326 -~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~l~~L 401 (606)
T 3vq2_A 326 -DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEEL 401 (606)
T ss_dssp -CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCTTCTTC
T ss_pred -CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhccCCCCC
Confidence 7777777777777544322 4567777777777777776653 3333 6777777777777776 355667777777
Q ss_pred cEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccc-cchhhhhhhhcccCCcc
Q 005619 359 ETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPACITNLLFWKVGSRY 436 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~~~~~~~~ 436 (688)
+.|++++|++.+..+ ..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++++. +|..+.
T Consensus 402 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 470 (606)
T 3vq2_A 402 QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA----------- 470 (606)
T ss_dssp CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-----------
T ss_pred CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc-----------
Confidence 777777777776665 5677777777777777777777777777777777777777777653 343332
Q ss_pred cccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhh
Q 005619 437 LSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEIC 516 (688)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~ 516 (688)
.+++|+.|++++|++++..|..|+
T Consensus 471 --------------------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~ 494 (606)
T 3vq2_A 471 --------------------------------------------------------NTTNLTFLDLSKCQLEQISWGVFD 494 (606)
T ss_dssp --------------------------------------------------------TCTTCCEEECTTSCCCEECTTTTT
T ss_pred --------------------------------------------------------cCCCCCEEECCCCcCCccChhhhc
Confidence 267899999999999999999999
Q ss_pred ccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC-CCCEEecCCCcCccCCCCCcccCCcCcc
Q 005619 517 DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYNDLSGPIPDKEQFSTFDES 595 (688)
Q Consensus 517 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~~~~~~~~~~ 595 (688)
.+++|+.|+|++|++++.+|..|+++++|+.|||++|+++ .+|..+..++ +|++|++++|++.|.|+... +..|.
T Consensus 495 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~-~~~~l-- 570 (606)
T 3vq2_A 495 TLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK-FLQWV-- 570 (606)
T ss_dssp TCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH-HHTTT--
T ss_pred ccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHH-HHHHH--
Confidence 9999999999999999989999999999999999999999 5667788887 59999999999999987632 22221
Q ss_pred ccCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 005619 596 SYRGNLHLCGPPINKSCTNLLELLETSSKGAE 627 (688)
Q Consensus 596 ~~~~n~~l~~~p~~~~C~~~~~~~~~~~~~~~ 627 (688)
..+......+....|..|....+....+.+
T Consensus 571 --~~~~~~~~~~~~~~C~~p~~~~~~~l~~~~ 600 (606)
T 3vq2_A 571 --KEQKQFLVNVEQMTCATPVEMNTSLVLDFN 600 (606)
T ss_dssp --TTSSSSBSSGGGCCCC--------------
T ss_pred --HcCcccccCCccceeCCChHhCCCEeeecc
Confidence 112222223345677766544444433333
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=469.19 Aligned_cols=505 Identities=22% Similarity=0.234 Sum_probs=420.5
Q ss_pred CCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhhhCCCCCCEEE
Q 005619 20 LEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFLLHQFNLKYLD 98 (688)
Q Consensus 20 L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~ 98 (688)
-+.++.++..++. +| ..+. +.+++|++++|.+. .+++..|.++++|++|++++|.+..+ |..+.++++|++|+
T Consensus 14 ~~~~~c~~~~l~~--iP-~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 14 NKTYNCENLGLNE--IP-GTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp TTEEECTTSCCSS--CC-TTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CceEECCCCCccc--Cc-CCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeee
Confidence 4578888888874 66 2343 47999999999875 45556799999999999999999766 78899999999999
Q ss_pred CCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC--CCCCCCCcCEEEccCCCCCCC-CChhhhhcCCCCCEEEccCCC
Q 005619 99 LSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ--LTSAQHGLISLDISSNNFTGK-LPQNMGIVLPKLDCMNISKNS 175 (688)
Q Consensus 99 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~L~~L~ls~n~~~~~-~~~~~~~~l~~L~~L~l~~n~ 175 (688)
+++|++++..|.. +.++++|++|++++|.+++.. ....+++|++|++++|++++. .|... .+++|++|++++|.
T Consensus 88 Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 88 LTANPLIFMAETA-LSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNA 164 (606)
T ss_dssp CTTCCCSEECTTT-TSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC--CCTTCCEEECCSSC
T ss_pred CCCCcccccChhh-hcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccccc--CCcccCEEEcccCc
Confidence 9999999666655 469999999999999999863 344889999999999999852 24433 49999999999999
Q ss_pred CCcccchhhhcCCCCC--EEEccCCcCccccCchhhcCCCCCCEEEcccCcCC--------------------------C
Q 005619 176 FEGNIPSSIGKMQGLR--LLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD--------------------------G 227 (688)
Q Consensus 176 l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~--------------------------~ 227 (688)
+++..+..++.+++|+ +|++++|.+.+. +...+ ...+|+.|++++|... .
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~-~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~ 242 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGI-EPGAF-DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED 242 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEE-CTTTT-TTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCcc-ChhHh-hhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence 9988899999999999 999999999854 44444 3467889998877410 0
Q ss_pred cCcccccCCC--CCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccc
Q 005619 228 QIFPNYVNLT--RLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305 (688)
Q Consensus 228 ~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 305 (688)
..+..+..+. +|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+
T Consensus 243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~ 321 (606)
T 3t6q_A 243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISA 321 (606)
T ss_dssp CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCG
T ss_pred cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhh
Confidence 1112222222 7899999999999888888999999999999999998 677888999999999999999998888889
Q ss_pred cCCCCCcEEEccCCcCccccccc-c-ccCccceEeeecCccccCC--chhccCCCCccEEeCcCCcCCCcCchhhhcCCC
Q 005619 306 NNLAILQILDISENNLSGSMIST-L-NLSSVEHLYLQSNALGGSI--PNTIFRGSALETLDLRDNYFFGRIPHQINEHSN 381 (688)
Q Consensus 306 ~~l~~L~~L~Ls~n~l~~~~~~~-~-~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 381 (688)
..+++|++|++++|.+.+..+.. + .+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 401 (606)
T 3t6q_A 322 SNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401 (606)
T ss_dssp GGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTT
T ss_pred hccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCcc
Confidence 99999999999999988655443 4 8899999999999998655 677888999999999999998888889999999
Q ss_pred ccEEeccCCcCCCCCch-hhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccce
Q 005619 382 LRALLLRGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTV 460 (688)
Q Consensus 382 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (688)
|+.|++++|++.+..+. .+..+++|+.|++++|.+++..|..+..
T Consensus 402 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------------------------------- 447 (606)
T 3t6q_A 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG---------------------------------- 447 (606)
T ss_dssp CSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT----------------------------------
T ss_pred CCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC----------------------------------
Confidence 99999999999877654 4889999999999999998776665533
Q ss_pred ecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc---CChhhhccCCCCeeeCCCCcCccCCCc
Q 005619 461 QLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD---IPSEICDLQNIHGLNLSHNFLSGSIPE 537 (688)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 537 (688)
+++|+.|++++|.+++. .+..+..+++|+.|+|++|++++.+|.
T Consensus 448 ---------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 494 (606)
T 3t6q_A 448 ---------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH 494 (606)
T ss_dssp ---------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTT
T ss_pred ---------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChh
Confidence 57899999999999873 346799999999999999999999999
Q ss_pred cccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC-cccCCcCccccCCCCCCC
Q 005619 538 SFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK-EQFSTFDESSYRGNLHLC 604 (688)
Q Consensus 538 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~l~ 604 (688)
.|+++++|+.|+|++|++++.+|..+.+++.| +|++++|++++..|.. ..+..+......+|+..|
T Consensus 495 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 495 AFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999999999999999999999999 9999999999877754 344555566666666554
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-52 Score=462.27 Aligned_cols=501 Identities=20% Similarity=0.194 Sum_probs=407.5
Q ss_pred CCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhhhCCCCCCEE
Q 005619 19 SLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFLLHQFNLKYL 97 (688)
Q Consensus 19 ~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L 97 (688)
.-++++.+++.++. +|. .+ .+++++|++++|.+. .++...|.++++|++|++++|.+..+ |..+.++++|++|
T Consensus 12 ~~~~~~c~~~~l~~--ip~-~~--~~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L 85 (606)
T 3vq2_A 12 PNITYQCMDQKLSK--VPD-DI--PSSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNL 85 (606)
T ss_dssp TTTEEECTTSCCSS--CCT-TS--CTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCCceEccCCCccc--CCC-CC--CCCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEe
Confidence 35689999999984 663 33 388999999999875 45555799999999999999999777 6678999999999
Q ss_pred ECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC--CCCCCCcCEEEccCCCCCC-CCChhhhhcCCCCCEEEccCC
Q 005619 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL--TSAQHGLISLDISSNNFTG-KLPQNMGIVLPKLDCMNISKN 174 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~l~~n 174 (688)
++++|.+++..|.. +.++++|++|++++|.+++.+. ...+++|++|++++|.+++ .+|..+. .+++|++|++++|
T Consensus 86 ~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 86 ILTGNPIQSFSPGS-FSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYN 163 (606)
T ss_dssp ECTTCCCCCCCTTS-STTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSS
T ss_pred ECCCCcccccChhh-cCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCC
Confidence 99999999655665 4699999999999999987653 3488999999999999985 5788776 7999999999999
Q ss_pred CCCcccchhhhcCCCCC----EEEccCCcCccccCchhhcCCCCCCEEEcccCcCC-CcCcccccCCCCCCEEec-----
Q 005619 175 SFEGNIPSSIGKMQGLR----LLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD-GQIFPNYVNLTRLLFLYL----- 244 (688)
Q Consensus 175 ~l~~~~~~~l~~l~~L~----~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L----- 244 (688)
.+++..+..++.+++|+ +|++++|.+. .++...+... +|+.|++++|.+. +..+..+.+++.++.+++
T Consensus 164 ~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~ 241 (606)
T 3vq2_A 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF 241 (606)
T ss_dssp CCCEECTTTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECC
T ss_pred cceecChhhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhcccccccccccccccc
Confidence 99988888888776655 8999999998 6777666555 8999999999886 344556667777776665
Q ss_pred ----------------------------cCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc
Q 005619 245 ----------------------------DNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296 (688)
Q Consensus 245 ----------------------------~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 296 (688)
..+.+.+..+. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.
T Consensus 242 ~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~ 318 (606)
T 3vq2_A 242 KDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQ 318 (606)
T ss_dssp TTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCC
T ss_pred ccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEccccc
Confidence 44555555555 7777888888888888864 45 67788888888888888
Q ss_pred cCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccC--CchhccCCCCccEEeCcCCcCCCcCch
Q 005619 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGS--IPNTIFRGSALETLDLRDNYFFGRIPH 374 (688)
Q Consensus 297 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~ 374 (688)
+ +.+| .+ .+++|++|++++|+..+.. ....+++|++|++++|.+++. .+..+..+++|++|++++|.+.+ +|.
T Consensus 319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~ 393 (606)
T 3vq2_A 319 L-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSA 393 (606)
T ss_dssp C-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECC
T ss_pred C-cccc-cC-CCCccceeeccCCcCccch-hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chh
Confidence 8 4666 45 8888888888888655433 233788888899988888755 37778888888999998888755 457
Q ss_pred hhhcCCCccEEeccCCcCCCCCc-hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccc
Q 005619 375 QINEHSNLRALLLRGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIR 453 (688)
Q Consensus 375 ~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (688)
.+..+++|+.|++++|++.+..| ..+..+++|++|++++|.+++..|..+.+
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------- 446 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG--------------------------- 446 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC---------------------------
Confidence 78888888999999888887776 67888888999999888888766665533
Q ss_pred cccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccc-cCChhhhccCCCCeeeCCCCcCc
Q 005619 454 NYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG-DIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 454 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~-~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
+++|+.|++++|.+++ .+|..|+.+++|+.|+|++|+++
T Consensus 447 ----------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 486 (606)
T 3vq2_A 447 ----------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE 486 (606)
T ss_dssp ----------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred ----------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCC
Confidence 5789999999999998 47999999999999999999999
Q ss_pred cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC-cccC-CcCccccCCCCCCCC
Q 005619 533 GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK-EQFS-TFDESSYRGNLHLCG 605 (688)
Q Consensus 533 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-~~~~-~~~~~~~~~n~~l~~ 605 (688)
+.+|..|+++++|++|+|++|++++.+|..+.++++|++|++++|+++ .+|.. ..+. .+......+|+..|+
T Consensus 487 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred ccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 999999999999999999999999999999999999999999999999 46654 2232 345555666665554
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-51 Score=469.10 Aligned_cols=519 Identities=23% Similarity=0.227 Sum_probs=420.6
Q ss_pred CEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC-CCc-chhhhCCCCCCEEE
Q 005619 21 EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL-GVI-PNFLLHQFNLKYLD 98 (688)
Q Consensus 21 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l-~~l-p~~~~~l~~L~~L~ 98 (688)
+..|.+++.++. +|. -.++|+.|+|++|.+. .+....|.++++|++|++++|.. ..+ |..+.++++|++|+
T Consensus 7 ~~~dcs~~~L~~--vP~----lp~~l~~LdLs~N~i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~ 79 (844)
T 3j0a_A 7 RIAFYRFCNLTQ--VPQ----VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79 (844)
T ss_dssp EEEEESCCCSSC--CCS----SCTTCCEEEEESCCCC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEE
T ss_pred eEEEccCCCCCC--CCC----CCCCcCEEECCCCcCC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEE
Confidence 467888888885 672 5689999999999865 44556799999999999999965 677 77899999999999
Q ss_pred CCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC----CCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCC
Q 005619 99 LSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL----TSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN 174 (688)
Q Consensus 99 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (688)
|++|.+++..|..+ .++++|++|++++|.+++... ...+++|++|++++|.+++..+...+..+++|++|++++|
T Consensus 80 Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 80 LGSSKIYFLHPDAF-QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp CTTCCCCEECTTSS-CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCCcCcccCHhHc-cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 99999996666654 699999999999999986322 3478999999999999986655444558999999999999
Q ss_pred CCCcccchhhhcC--CCCCEEEccCCcCccccCchhhcCCC------CCCEEEcccCcCCCcCcccccC---CCCCCEEe
Q 005619 175 SFEGNIPSSIGKM--QGLRLLDVSSNKFAGELSQSPVTNCF------SLEWLQLSNNNFDGQIFPNYVN---LTRLLFLY 243 (688)
Q Consensus 175 ~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~~~~l~------~L~~L~L~~n~i~~~~~~~~~~---l~~L~~L~ 243 (688)
.+++..+..+..+ ++|+.|++++|.+.+..+... ..++ .|+.|++++|.+++..+..+.. .++++.+.
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDW-GKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCC-CSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccch-hhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 9999899999887 899999999999987666542 3333 4999999999988777766653 36788888
Q ss_pred ccCC---------cCCCcccccccCC--CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCc
Q 005619 244 LDNN---------HFSGKIKDGLLRS--SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312 (688)
Q Consensus 244 L~~n---------~l~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 312 (688)
++.+ .+.+.....+..+ ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 7733 3333333444443 7899999999999988899999999999999999999988899999999999
Q ss_pred EEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCc
Q 005619 313 ILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNY 391 (688)
Q Consensus 313 ~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 391 (688)
+|++++|.+++..+..+ .+++|++|++++|.+.+..+..+..+++|++|++++|.+++. ..+++|+.|++++|+
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNK 392 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCC
Confidence 99999999998877777 899999999999999977777889999999999999999643 237899999999999
Q ss_pred CCCCCchhhcCCCCCCEEEccCCcCccccch-hhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCC
Q 005619 392 LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA-CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470 (688)
Q Consensus 392 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 470 (688)
++ .+|.. ..+++.|++++|++++.... .+.+++.
T Consensus 393 l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~----------------------------------------- 427 (844)
T 3j0a_A 393 LV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPH----------------------------------------- 427 (844)
T ss_dssp CC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTT-----------------------------------------
T ss_pred cc-ccccc---ccccceeecccCccccCchhhhhhcCCc-----------------------------------------
Confidence 98 45543 56899999999999864322 1222110
Q ss_pred CCCcceEEEeeecccccccc----ccccccccEEEccCCccc-----ccCChhhhccCCCCeeeCCCCcCccCCCccccC
Q 005619 471 SLGTQVEVNFMTKNRYESYK----GVILDYMAGLDLSSNKLT-----GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSN 541 (688)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~----~~~l~~L~~LdLs~N~l~-----~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 541 (688)
++...+..+.+.... ...+++|+.|+|++|.++ +..|..|..+++|+.|+|++|++++.+|..|++
T Consensus 428 -----L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 428 -----LQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp -----CCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred -----cceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 111112222222111 122678999999999997 455677899999999999999999999999999
Q ss_pred CCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCCC
Q 005619 542 LKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPP 607 (688)
Q Consensus 542 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p 607 (688)
+++|+.|+|++|++++..|..+. ++|++||+++|++++.+|.. +..+....+.+|+..|+.+
T Consensus 503 l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 503 LTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSS
T ss_pred hhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCcccccc
Confidence 99999999999999988887776 89999999999999998854 5566777778888877654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-50 Score=442.61 Aligned_cols=492 Identities=19% Similarity=0.207 Sum_probs=382.9
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCE
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKY 96 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~ 96 (688)
+++++|++++|.+++ ++...|.++++|++|++++|.+. .++..+|.++++|++|++++|.+..+| ..+..+++|++
T Consensus 28 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCE--ECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCc--cChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 578888888888875 33357888888888888888654 455556888888888888888887664 67888888888
Q ss_pred EECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC---CCCCcCEEEccCCCCCCCCChhhhhcCCCC----CEE
Q 005619 97 LDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS---AQHGLISLDISSNNFTGKLPQNMGIVLPKL----DCM 169 (688)
Q Consensus 97 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L----~~L 169 (688)
|++++|+++ .++...+.++++|++|++++|.+++...+. .+++|++|++++|.+++..+..+ ..+++| +++
T Consensus 105 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L 182 (570)
T 2z63_A 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSL 182 (570)
T ss_dssp EECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEE
T ss_pred ccccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhc
Confidence 888888887 444433567888888888888887654333 57788888888888874434434 356666 788
Q ss_pred EccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC------CcCcccccCCC--CCCE
Q 005619 170 NISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD------GQIFPNYVNLT--RLLF 241 (688)
Q Consensus 170 ~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~------~~~~~~~~~l~--~L~~ 241 (688)
++++|.+++..+..+... +|++|++++|..........+..++.++.+.+....+. ......+..++ .++.
T Consensus 183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 261 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261 (570)
T ss_dssp ECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEE
T ss_pred ccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhh
Confidence 888888887767666655 68888888775443222333456666666555433221 11122233333 3566
Q ss_pred EeccCC-cCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCc
Q 005619 242 LYLDNN-HFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENN 320 (688)
Q Consensus 242 L~L~~n-~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 320 (688)
++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.
T Consensus 262 l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~ 336 (570)
T 2z63_A 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNK 336 (570)
T ss_dssp EEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCB
T ss_pred hhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCc
Confidence 777766 666677788888899999999999988 577778888 9999999999988 4444 477899999999998
Q ss_pred CccccccccccCccceEeeecCccccCC--chhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCc-
Q 005619 321 LSGSMISTLNLSSVEHLYLQSNALGGSI--PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIP- 397 (688)
Q Consensus 321 l~~~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 397 (688)
+.+..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+
T Consensus 337 ~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 414 (570)
T 2z63_A 337 GGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEF 414 (570)
T ss_dssp SCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTS
T ss_pred ccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccch
Confidence 8766554 57889999999999988554 67788899999999999998765544 8899999999999999987665
Q ss_pred hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceE
Q 005619 398 HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVE 477 (688)
Q Consensus 398 ~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (688)
..+..+++|++|++++|.+++..|..+..
T Consensus 415 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------------------------- 443 (570)
T 2z63_A 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNG--------------------------------------------------- 443 (570)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTT---------------------------------------------------
T ss_pred hhhhcCCCCCEEeCcCCcccccchhhhhc---------------------------------------------------
Confidence 56888999999999999998776655432
Q ss_pred EEeeeccccccccccccccccEEEccCCccc-ccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 478 VNFMTKNRYESYKGVILDYMAGLDLSSNKLT-GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
+++|+.|++++|.++ +.+|..+..+++|+.|+|++|++++..|..|+++++|++|++++|+++
T Consensus 444 ----------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 444 ----------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp ----------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred ----------------CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 578999999999998 678999999999999999999999999999999999999999999999
Q ss_pred ccCCcCCCCCCCCCEEecCCCcCccCCCCCccc
Q 005619 557 GQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589 (688)
Q Consensus 557 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 589 (688)
+.+|..+.++++|++|++++|+++|.||....+
T Consensus 508 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~ 540 (570)
T 2z63_A 508 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540 (570)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCHHHhhcccCCcEEEecCCcccCCCcchHHH
Confidence 998889999999999999999999999976544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=431.26 Aligned_cols=487 Identities=18% Similarity=0.183 Sum_probs=355.1
Q ss_pred CCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEE
Q 005619 19 SLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYL 97 (688)
Q Consensus 19 ~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L 97 (688)
...+.|.+++.++. +|. .+ .++|++|++++|.+. .+++..+.++++|++|++++|++..++ ..+..+++|++|
T Consensus 6 ~~~~c~~~~~~l~~--ip~-~~--~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 79 (549)
T 2z81_A 6 ASGVCDGRSRSFTS--IPS-GL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHL 79 (549)
T ss_dssp TTSEEECTTSCCSS--CCS-CC--CTTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCceEECCCCcccc--ccc-cC--CCCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEE
Confidence 33445666666653 442 22 256666677666643 333345666777777777777775553 566777777777
Q ss_pred ECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC---CCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCC
Q 005619 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL---TSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN 174 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n 174 (688)
++++|++++ ++...+.++++|++|++++|.+++... ...+++|++|++++|.+.+.+|...+..+++|++|++++|
T Consensus 80 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 80 DLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp ECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred ECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 777777763 333334577777777777777765432 2356777777777777544666544457788888888888
Q ss_pred CCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcC---cccccCCCCCCEEeccCCcCCC
Q 005619 175 SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI---FPNYVNLTRLLFLYLDNNHFSG 251 (688)
Q Consensus 175 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~ 251 (688)
.+++..|..++.+++|++|++++|.+. .++...+..+++|+.|++++|.+++.. ......+++|+.|++++|.+.+
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 237 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEH
T ss_pred cccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccch
Confidence 888777788888888888888888765 566665566788888888888877532 1223456778888888887765
Q ss_pred ccc----ccccCCCCCCEEEccCCcCCCCC------chhhhCCcCCcEEEccccccCCC-----CcccccCCCCCcEEEc
Q 005619 252 KIK----DGLLRSSELMVLDISNNHLSGHI------PSWMGNFSNLYILSMSKNLLEGN-----IPVQFNNLAILQILDI 316 (688)
Q Consensus 252 ~~~----~~~~~~~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~-----~~~~l~~l~~L~~L~L 316 (688)
..+ ..+..+++|+.+++++|.+.+.. ...+..+++|+.|++.++.+... .+..+...++|++|++
T Consensus 238 ~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred hHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 433 23355678888888888765421 12345677888888888766532 2223345678999999
Q ss_pred cCCcCcccccccc-ccCccceEeeecCccccCCch---hccCCCCccEEeCcCCcCCCcCc--hhhhcCCCccEEeccCC
Q 005619 317 SENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPN---TIFRGSALETLDLRDNYFFGRIP--HQINEHSNLRALLLRGN 390 (688)
Q Consensus 317 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n 390 (688)
++|.+...+...+ .+++|++|++++|.+++.+|. .+..+++|++|++++|++++..+ ..+..+++|++|++++|
T Consensus 318 ~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N 397 (549)
T 2z81_A 318 ENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397 (549)
T ss_dssp ESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC
T ss_pred ccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC
Confidence 9999886655554 689999999999999876643 36778999999999999976543 56889999999999999
Q ss_pred cCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCC
Q 005619 391 YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGR 470 (688)
Q Consensus 391 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 470 (688)
+++ .+|..+..+++|++|++++|+++ .+|.++
T Consensus 398 ~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---------------------------------------------- 429 (549)
T 2z81_A 398 TFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---------------------------------------------- 429 (549)
T ss_dssp CCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS----------------------------------------------
T ss_pred CCc-cCChhhcccccccEEECCCCCcc-cccchh----------------------------------------------
Confidence 998 67888889999999999999987 233211
Q ss_pred CCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeC
Q 005619 471 SLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 550 (688)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 550 (688)
.+.|+.||+++|++++.+ ..+++|+.|+|++|+++ .+|. .+.+++|+.|||
T Consensus 430 -----------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~L 480 (549)
T 2z81_A 430 -----------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKI 480 (549)
T ss_dssp -----------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEEC
T ss_pred -----------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEec
Confidence 356899999999999754 47899999999999999 6776 567999999999
Q ss_pred CCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccC
Q 005619 551 SHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590 (688)
Q Consensus 551 s~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 590 (688)
++|++++.+|..+..+++|++|++++|++.|.||...++.
T Consensus 481 s~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~l~ 520 (549)
T 2z81_A 481 SRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520 (549)
T ss_dssp CSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHHHHHH
T ss_pred CCCccCCcCHHHHhcCcccCEEEecCCCccCCCccHHHHH
Confidence 9999999999999999999999999999999998544443
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-46 Score=414.54 Aligned_cols=459 Identities=21% Similarity=0.213 Sum_probs=371.9
Q ss_pred cceeEEECCCCCCCCc-chhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC--CCCCCCcCEEE
Q 005619 69 FQLKVLSLPNCNLGVI-PNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL--TSAQHGLISLD 145 (688)
Q Consensus 69 ~~L~~L~l~~n~l~~l-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~ 145 (688)
+++++|++++|.++.+ +..+.++++|++|++++|++++ ++...+.++++|++|++++|.++.... ...+++|++|+
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~-i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCc-cCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4799999999999777 4578999999999999999984 544456799999999999999987643 34789999999
Q ss_pred ccCCCCCCCCChhhhhcCCCCCEEEccCCCCCc-ccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCC----CEEEc
Q 005619 146 ISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG-NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL----EWLQL 220 (688)
Q Consensus 146 ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L----~~L~L 220 (688)
+++|+++ .++...+..+++|++|++++|.+++ .+|..++++++|++|++++|.+. .++...+..+++| +.+++
T Consensus 107 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~~~~~L~l 184 (570)
T 2z63_A 107 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDL 184 (570)
T ss_dssp CTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCC-EECGGGGHHHHTCTTCCCEEEC
T ss_pred ccccccc-cCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccc-eecHHHccchhccchhhhhccc
Confidence 9999998 5555334589999999999999987 36899999999999999999998 5555556677777 89999
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCC-cccccccCCC--------------------------------CCCEEE
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG-KIKDGLLRSS--------------------------------ELMVLD 267 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~--------------------------------~L~~L~ 267 (688)
++|.+++..+..+... +|+.|++++|.... ..+..+..++ .++.++
T Consensus 185 ~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~ 263 (570)
T 2z63_A 185 SLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263 (570)
T ss_dssp TTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred CCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence 9999998877777665 89999999874321 1111122222 245556
Q ss_pred ccCC-cCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCcccc
Q 005619 268 ISNN-HLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGG 346 (688)
Q Consensus 268 Ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 346 (688)
++++ .+.+..+..+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+...+. ..+++|++|++++|.+.+
T Consensus 264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSSCCB--CBCSSCCEEEEESCBSCC
T ss_pred hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccccCc--ccccccCEEeCcCCcccc
Confidence 6665 566677788888899999999999887 567777777 89999999998884443 367889999999998876
Q ss_pred CCchhccCCCCccEEeCcCCcCCCcC--chhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccch-h
Q 005619 347 SIPNTIFRGSALETLDLRDNYFFGRI--PHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA-C 423 (688)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~-~ 423 (688)
..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+++..|. .
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 5554 67789999999999887654 67888899999999999998865444 88899999999999988765442 1
Q ss_pred hhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEcc
Q 005619 424 ITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLS 503 (688)
Q Consensus 424 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs 503 (688)
+ ..+++|+.|+++
T Consensus 417 ~-------------------------------------------------------------------~~l~~L~~L~l~ 429 (570)
T 2z63_A 417 F-------------------------------------------------------------------LSLRNLIYLDIS 429 (570)
T ss_dssp T-------------------------------------------------------------------TTCTTCCEEECT
T ss_pred h-------------------------------------------------------------------hcCCCCCEEeCc
Confidence 2 126789999999
Q ss_pred CCcccccCChhhhccCCCCeeeCCCCcCc-cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccC
Q 005619 504 SNKLTGDIPSEICDLQNIHGLNLSHNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGP 582 (688)
Q Consensus 504 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 582 (688)
+|.+++..|..|..+++|+.|+|++|.++ +.+|..++.+++|+.|++++|++++..|..+..+++|++|++++|++++.
T Consensus 430 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 509 (570)
T 2z63_A 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSV 509 (570)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCC
Confidence 99999999999999999999999999998 67999999999999999999999999999999999999999999999987
Q ss_pred CCCC-cccCCcCccccCCCCCCCC
Q 005619 583 IPDK-EQFSTFDESSYRGNLHLCG 605 (688)
Q Consensus 583 ~p~~-~~~~~~~~~~~~~n~~l~~ 605 (688)
.|.. ..+..+....+.+|+..|.
T Consensus 510 ~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 510 PDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CHHHhhcccCCcEEEecCCcccCC
Confidence 7654 4455555555666654443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-48 Score=431.16 Aligned_cols=433 Identities=19% Similarity=0.263 Sum_probs=277.1
Q ss_pred cceeEEECCCCCC-CCcchhhhCCCCCCEEECCCCcC------CC------CCchHHhhCCCCCcEEEccCCCCCCCCCC
Q 005619 69 FQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKL------AG------NFPTWLLENNTKLEVLYLTNNSFSGFQLT 135 (688)
Q Consensus 69 ~~L~~L~l~~n~l-~~lp~~~~~l~~L~~L~Ls~n~l------~~------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 135 (688)
.+++.|+|+++.+ +.+|..++++++|++|+|++|.+ .+ .+|... +..|+ ++++.+.+.+....
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~---~~~l~-l~l~~~~l~~~~~~ 156 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ---KQKMR-MHYQKTFVDYDPRE 156 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH---HHHHH-THHHHHHTCCCGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH---HHHHH-hhHHHhhhccCchh
Confidence 4788889998888 67888888999999999988865 22 334332 23344 44444443332110
Q ss_pred C---------------------CCCCcCEEEcc--CCCCCCCCChhhhhcCCCCCEEEccCCCCCcc-------------
Q 005619 136 S---------------------AQHGLISLDIS--SNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN------------- 179 (688)
Q Consensus 136 ~---------------------~~~~L~~L~ls--~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~------------- 179 (688)
. ....++.+.+. .|++++ +|..+. ++++|++|++++|.+++.
T Consensus 157 ~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 157 DFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccch
Confidence 0 01112222222 456665 666654 577777777777777764
Q ss_pred ----cchhhh--cCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc-CCC-cCcccccCC------CCCCEEecc
Q 005619 180 ----IPSSIG--KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN-FDG-QIFPNYVNL------TRLLFLYLD 245 (688)
Q Consensus 180 ----~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l------~~L~~L~L~ 245 (688)
+|+.++ ++++|++|++++|.+.+.+|.. +.++++|++|++++|. +++ .+|..+..+ ++|++|+++
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 666666 7777777777777776666644 4567777777777776 665 566655554 677777777
Q ss_pred CCcCCCcccc--cccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCC-CcEEEccCCcCc
Q 005619 246 NNHFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAI-LQILDISENNLS 322 (688)
Q Consensus 246 ~n~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~ 322 (688)
+|.++ .+|. .+..+++|++|++++|.+++.+| .++.+++|++|++++|.+. .+|..+..+++ |++|++++|.++
T Consensus 314 ~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 314 YNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp SSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred CCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 77776 5665 66777777777777777776666 6666777777777777766 55666667776 777777777776
Q ss_pred cccccccc--cCccceEeeecCccccCCchhcc-------CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC
Q 005619 323 GSMISTLN--LSSVEHLYLQSNALGGSIPNTIF-------RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ 393 (688)
Q Consensus 323 ~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~-------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 393 (688)
..+..... +++|++|++++|.+++..|..+. .+++|++|++++|++++..+..+..+++|+.|++++|+++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~ 470 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT 470 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS
T ss_pred ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC
Confidence 43322222 33677777777777766666665 5566777777777776443344455677777777777776
Q ss_pred CCCchhhcCC-------CCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCC
Q 005619 394 GPIPHQLCQL-------RKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466 (688)
Q Consensus 394 ~~~~~~~~~l-------~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 466 (688)
...+..+... ++|+.|++++|+++ .+|..+..
T Consensus 471 ~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~---------------------------------------- 509 (636)
T 4eco_A 471 EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA---------------------------------------- 509 (636)
T ss_dssp BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------------
T ss_pred CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------------
Confidence 3222223222 26777777777776 45543320
Q ss_pred CCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeC------CCCcCccCCCcccc
Q 005619 467 IDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL------SHNFLSGSIPESFS 540 (688)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~ 540 (688)
..+++|+.|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..++
T Consensus 510 -------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~ 563 (636)
T 4eco_A 510 -------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563 (636)
T ss_dssp -------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGG
T ss_pred -------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHh
Confidence 014567777777777776 6777777777777777 45666777777777
Q ss_pred CCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 541 NLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 541 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
++++|+.|+|++|++ +.+|..+. ++|++||+++|++.+
T Consensus 564 ~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 564 LCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp GCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred cCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 777777777777777 46666654 677777777776664
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-45 Score=406.95 Aligned_cols=473 Identities=19% Similarity=0.230 Sum_probs=382.4
Q ss_pred CCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCC
Q 005619 2 SSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL 81 (688)
Q Consensus 2 s~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l 81 (688)
++|+++.+ |..+. ++|++|+|++|.+++ ..| ..+.++++|++|++++|.+. .+++.+|..+++|++|++++|.+
T Consensus 13 ~~~~l~~i-p~~~~--~~L~~L~Ls~n~l~~-~~~-~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 13 RSRSFTSI-PSGLT--AAMKSLDLSFNKITY-IGH-GDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp TTSCCSSC-CSCCC--TTCCEEECCSSCCCE-ECS-STTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred CCCccccc-cccCC--CCccEEECcCCccCc-cCh-hhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCcc
Confidence 45667754 54443 799999999999986 333 57999999999999999865 45556799999999999999999
Q ss_pred CCcch-hhhCCCCCCEEECCCCcCCCC-CchHHhhCCCCCcEEEccCCC-CCCCC--CCCCCCCcCEEEccCCCCCCCCC
Q 005619 82 GVIPN-FLLHQFNLKYLDLSHNKLAGN-FPTWLLENNTKLEVLYLTNNS-FSGFQ--LTSAQHGLISLDISSNNFTGKLP 156 (688)
Q Consensus 82 ~~lp~-~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~~~L~~L~ls~n~~~~~~~ 156 (688)
..+|. .+..+++|++|++++|.+++. .|. .+.++++|++|++++|. +...+ ....+++|++|++++|.+++.+|
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 77755 599999999999999999853 344 35689999999999998 44432 23478899999999999998788
Q ss_pred hhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCcccc--CchhhcCCCCCCEEEcccCcCCCcCc----
Q 005619 157 QNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGEL--SQSPVTNCFSLEWLQLSNNNFDGQIF---- 230 (688)
Q Consensus 157 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~---- 230 (688)
..+. .+++|++|++++|.+.......+..+++|++|++++|.+.+.. +......+++|+.|++++|.+++..+
T Consensus 166 ~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 244 (549)
T 2z81_A 166 QSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244 (549)
T ss_dssp TTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred hhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence 8776 7999999999999987443333467999999999999998532 33334567899999999998875443
Q ss_pred ccccCCCCCCEEeccCCcCCCcc------cccccCCCCCCEEEccCCcCCCC-----CchhhhCCcCCcEEEccccccCC
Q 005619 231 PNYVNLTRLLFLYLDNNHFSGKI------KDGLLRSSELMVLDISNNHLSGH-----IPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 231 ~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~~~~L~~L~Ls~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
..+..+++|+.+++++|.+.+.. ...+..+++++.|++.++.+... .+..+...++|++|++++|.+.
T Consensus 245 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~- 323 (549)
T 2z81_A 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF- 323 (549)
T ss_dssp GGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-
T ss_pred HHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-
Confidence 33467889999999999876532 12356678999999999877532 2333455679999999999998
Q ss_pred CCcccc-cCCCCCcEEEccCCcCcccccc---cc-ccCccceEeeecCccccCCc--hhccCCCCccEEeCcCCcCCCcC
Q 005619 300 NIPVQF-NNLAILQILDISENNLSGSMIS---TL-NLSSVEHLYLQSNALGGSIP--NTIFRGSALETLDLRDNYFFGRI 372 (688)
Q Consensus 300 ~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~---~~-~~~~L~~L~L~~n~l~~~~~--~~~~~~~~L~~L~l~~n~l~~~~ 372 (688)
.+|..+ ..+++|++|++++|++.+..+. .+ .+++|++|++++|.+++..+ ..+..+++|++|++++|+++ .+
T Consensus 324 ~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 402 (549)
T 2z81_A 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PM 402 (549)
T ss_dssp CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CC
T ss_pred cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cC
Confidence 555555 6899999999999999986532 23 78999999999999985432 45888999999999999996 57
Q ss_pred chhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccccc
Q 005619 373 PHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI 452 (688)
Q Consensus 373 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (688)
|..+..+++|++|++++|++++ +|..+ .++|++|++++|++++.++
T Consensus 403 p~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~~------------------------------- 448 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFSL------------------------------- 448 (549)
T ss_dssp CSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCCC-------------------------------
T ss_pred ChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhcc-------------------------------
Confidence 8888899999999999999984 44433 2689999999999985321
Q ss_pred ccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCc
Q 005619 453 RNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
.++.|+.|||++|+++ .+|. ...+++|+.|+|++|+++
T Consensus 449 ----------------------------------------~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 449 ----------------------------------------FLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp ----------------------------------------CCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCC
T ss_pred ----------------------------------------cCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccC
Confidence 1578999999999999 6665 578999999999999999
Q ss_pred cCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 533 GSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 533 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+.+|..++.+++|+.|++++|++++..|
T Consensus 487 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 487 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred CcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999999999999999998766
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-46 Score=407.81 Aligned_cols=436 Identities=19% Similarity=0.209 Sum_probs=298.2
Q ss_pred ceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccC
Q 005619 70 QLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISS 148 (688)
Q Consensus 70 ~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~ 148 (688)
+|++|++++|.+..++ ..+.++++|++|++++|++++..|.. +.++++|++|++++|+++.++.. .+++|++|++++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~L~~ 99 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISV-FKFNQELEYLDLSHNKLVKISCH-PTVNLKHLDLSF 99 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGG-GTTCTTCCEEECCSSCCCEEECC-CCCCCSEEECCS
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHH-hhcccCCCEEecCCCceeecCcc-ccCCccEEeccC
Confidence 4444555555554332 34555555555555555555332332 23555555555555555544333 455566666666
Q ss_pred CCCCC-CCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCC--CEEEccCCcC--ccccCchhhcCCC-CCCEEEccc
Q 005619 149 NNFTG-KLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLDVSSNKF--AGELSQSPVTNCF-SLEWLQLSN 222 (688)
Q Consensus 149 n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~l~-~L~~L~L~~ 222 (688)
|.+++ .+|..+. .+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|.. +..+. ....+++++
T Consensus 100 N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~-l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 100 NAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG-LQDFNTESLHIVFPT 174 (520)
T ss_dssp SCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT-TTTCCEEEEEEECCS
T ss_pred Cccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeeccccccccccccc-ccccccceEEEEecc
Confidence 65553 3445444 56666666666666654 345555555 6666666666 4333332 12222 122455566
Q ss_pred CcCCCcCc-ccccCCCCCCEEeccCCc-------CCCcccccccCCCCCCEEEccCCcCCCCCchhhh---CCcCCcEEE
Q 005619 223 NNFDGQIF-PNYVNLTRLLFLYLDNNH-------FSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMG---NFSNLYILS 291 (688)
Q Consensus 223 n~i~~~~~-~~~~~l~~L~~L~L~~n~-------l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~ 291 (688)
|.+.+..+ ..+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+++..+..+. ..++|++|+
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~ 253 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS 253 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE
Confidence 65554333 345566777777777765 444444 566777888888877776643222221 245788888
Q ss_pred ccccccCCCCcccc-----cCCCCCcEEEccCCcCcccccccc-c---cCccceEeeecCccccCCchhccCCCCccEEe
Q 005619 292 MSKNLLEGNIPVQF-----NNLAILQILDISENNLSGSMISTL-N---LSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362 (688)
Q Consensus 292 l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~-~---~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 362 (688)
+++|.+.+.+|..+ ..+++|+.+++++|.+ ..+...+ . ..+|+.|++++|.+.+.. ....+++|++|+
T Consensus 254 l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 254 ISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred eecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 88888887778777 7888888888888888 3321222 2 257899999999886432 125778999999
Q ss_pred CcCCcCCCcCchhhhcCCCccEEeccCCcCCC--CCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccc
Q 005619 363 LRDNYFFGRIPHQINEHSNLRALLLRGNYLQG--PIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGF 440 (688)
Q Consensus 363 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~ 440 (688)
+++|++++..|..++.+++|+.|++++|++++ .+|..+..+++|++|++++|++++.+|....
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--------------- 395 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--------------- 395 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC---------------
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh---------------
Confidence 99999998888899999999999999999986 4567899999999999999999875664210
Q ss_pred eeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCC
Q 005619 441 VMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN 520 (688)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 520 (688)
..++.|+.|++++|++++..|..+. ++
T Consensus 396 ---------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~ 422 (520)
T 2z7x_B 396 ---------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PR 422 (520)
T ss_dssp ---------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TT
T ss_pred ---------------------------------------------------ccCccCCEEECcCCCCCcchhhhhc--cc
Confidence 1157899999999999988887664 79
Q ss_pred CCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 521 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|+.|+|++|+++ .+|..+..+++|++|+|++|++++..+..+..+++|++|++++|+++|.|+.
T Consensus 423 L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 423 IKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999999 7888888999999999999999954444499999999999999999998874
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=411.69 Aligned_cols=524 Identities=19% Similarity=0.172 Sum_probs=342.6
Q ss_pred CchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcch-hh
Q 005619 10 LPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN-FL 88 (688)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~ 88 (688)
+|..+. +++++|||++|.|+. ++...|.++++|++|+|++|.+. .++..+|.++++|++|+|++|+++.+|. .+
T Consensus 46 vP~~lp--~~~~~LdLs~N~i~~--l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f 120 (635)
T 4g8a_A 46 IPDNLP--FSTKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAF 120 (635)
T ss_dssp CCSSSC--TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGG
T ss_pred cCCCCC--cCCCEEEeeCCCCCC--CCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHh
Confidence 344443 478999999999985 55567899999999999988754 5666678899999999999999988864 57
Q ss_pred hCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC---CCCCcCEEEccCCCCCCCCChhhhhcCCC
Q 005619 89 LHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS---AQHGLISLDISSNNFTGKLPQNMGIVLPK 165 (688)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~~L~~L~ls~n~~~~~~~~~~~~~l~~ 165 (688)
.++++|++|++++|+++ .++...++++++|++|++++|.++....+. .+++|++|++++|++++..+..+. .+.+
T Consensus 121 ~~L~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~ 198 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQ 198 (635)
T ss_dssp TTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHT
T ss_pred cCCCCCCEEECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc-chhh
Confidence 88999999999999998 556555678999999999999988765443 678899999999998854444433 3333
Q ss_pred ----CCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcC------CCcCccccc-
Q 005619 166 ----LDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF------DGQIFPNYV- 234 (688)
Q Consensus 166 ----L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i------~~~~~~~~~- 234 (688)
...++++.|.+....+..+ ....++.+++.+|.....+....+..+..++...+..+.. .......+.
T Consensus 199 l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 277 (635)
T 4g8a_A 199 MPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 277 (635)
T ss_dssp CTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGG
T ss_pred hhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccc
Confidence 4468888888875544443 3345677788777655444455555666666555433221 111112222
Q ss_pred --------------------------CCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCc
Q 005619 235 --------------------------NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLY 288 (688)
Q Consensus 235 --------------------------~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 288 (688)
...+++.+.+.++.+... ..+.....++.|++.+|.+.+..+. .+..|+
T Consensus 278 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~ 352 (635)
T 4g8a_A 278 LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLK 352 (635)
T ss_dssp GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCC
T ss_pred ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhh
Confidence 233444444444443321 1233344555555555555433221 234555
Q ss_pred EEEccccccCCCCcccccCCCCCcEEEccCCcCccccccc--c-ccCccceEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 289 ILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIST--L-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 289 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
.+++..|..... .....+++|+.+++++|.+....... . .+.+|+.+++..+... ..+..+..+++|+.++++.
T Consensus 353 ~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~ 429 (635)
T 4g8a_A 353 RLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 429 (635)
T ss_dssp EEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTT
T ss_pred hcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhh
Confidence 555555544322 22334556666666666554322211 1 4555666666665554 3334455556666666665
Q ss_pred CcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccc-cchhhhhhhhcccCCcccccceeE
Q 005619 366 NYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPACITNLLFWKVGSRYLSGFVMV 443 (688)
Q Consensus 366 n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~~~~~~~~~~~~~~~ 443 (688)
+......+ ..+..+++++.++++.|.+.+..+..+..++.|+.|++++|++.+. .|..+
T Consensus 430 ~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~------------------- 490 (635)
T 4g8a_A 430 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------------- 490 (635)
T ss_dssp SEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC-------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhh-------------------
Confidence 55433322 3445566666666666666665666666666666666666653321 22221
Q ss_pred EecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 444 VMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
..+++|+.|||++|++++..|..|+++++|++
T Consensus 491 ------------------------------------------------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 491 ------------------------------------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp ------------------------------------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ------------------------------------------------hhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 12678999999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCC-CCCCEEecCCCcCccCCCCCcccCCcCccccCCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTEL-HSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLH 602 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~ 602 (688)
|+|++|+|++..|..|+++++|++|||++|++++.+|..+..+ ++|++|++++|+++|.|.. .+|..|-.. +..
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~-~~~~~wl~~----~~~ 597 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKD----QRQ 597 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG-HHHHHHHHH----TTT
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc-HHHHHHHHh----CCC
Confidence 9999999999999999999999999999999999999999998 6899999999999999963 333333211 111
Q ss_pred CCCCCCCCCCCCccccccc
Q 005619 603 LCGPPINKSCTNLLELLET 621 (688)
Q Consensus 603 l~~~p~~~~C~~~~~~~~~ 621 (688)
....+....|..|....+.
T Consensus 598 ~~~~~~~~~C~~P~~~~g~ 616 (635)
T 4g8a_A 598 LLVEVERMECATPSDKQGM 616 (635)
T ss_dssp TBSCGGGCBBCSSTTTTTC
T ss_pred ccCCCCCceeCCchHHCCC
Confidence 1122234567766544443
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=419.90 Aligned_cols=443 Identities=19% Similarity=0.218 Sum_probs=367.0
Q ss_pred CCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC-----------CCC-CCCCcCEEEccCCCCCCCCChhh
Q 005619 92 FNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ-----------LTS-AQHGLISLDISSNNFTGKLPQNM 159 (688)
Q Consensus 92 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------~~~-~~~~L~~L~ls~n~~~~~~~~~~ 159 (688)
.+++.|+|+++.++|.+|..+ +++++|++|++++|.+.... .+. .+..|+ ++++.|.+.+.+|..+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l-~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAI-GQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGG-GGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGS
T ss_pred CCEEEEEecCcccCCcCChHH-hcCccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhH
Confidence 479999999999999999776 69999999999999762111 111 233566 7777777777666655
Q ss_pred hhcC------------------CCCCEEEcc--CCCCCcccchhhhcCCCCCEEEccCCcCccc----------------
Q 005619 160 GIVL------------------PKLDCMNIS--KNSFEGNIPSSIGKMQGLRLLDVSSNKFAGE---------------- 203 (688)
Q Consensus 160 ~~~l------------------~~L~~L~l~--~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~---------------- 203 (688)
...+ ..++.+.+. .|.+++ +|+.++++++|++|++++|.+++.
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~ 237 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcc
Confidence 4211 122222222 578888 899999999999999999999974
Q ss_pred -cCchhhc--CCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCc-CCC-cccccccCC------CCCCEEEccCCc
Q 005619 204 -LSQSPVT--NCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNH-FSG-KIKDGLLRS------SELMVLDISNNH 272 (688)
Q Consensus 204 -~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~~------~~L~~L~Ls~n~ 272 (688)
+|..+ . ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.
T Consensus 238 ~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~ 316 (636)
T 4eco_A 238 YKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316 (636)
T ss_dssp HTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred cCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence 77664 5 89999999999999999999999999999999999998 988 788877765 899999999999
Q ss_pred CCCCCch--hhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCc-cceEeeecCccccCCc
Q 005619 273 LSGHIPS--WMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSS-VEHLYLQSNALGGSIP 349 (688)
Q Consensus 273 l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~-L~~L~L~~n~l~~~~~ 349 (688)
++ .+|. .++.+++|++|++++|.+.|.+| .+..+++|++|++++|+++..+.....+++ |++|++++|.++ .+|
T Consensus 317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp 393 (636)
T 4eco_A 317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIP 393 (636)
T ss_dssp CS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCC
T ss_pred CC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccc
Confidence 99 7888 89999999999999999998888 899999999999999999955444448888 999999999999 788
Q ss_pred hhccCCC--CccEEeCcCCcCCCcCchhhh-------cCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcccc
Q 005619 350 NTIFRGS--ALETLDLRDNYFFGRIPHQIN-------EHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420 (688)
Q Consensus 350 ~~~~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 420 (688)
..+...+ +|++|++++|++.+..|..+. .+++|+.|++++|++++..+..+..+++|+.|++++|+++ .+
T Consensus 394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i 472 (636)
T 4eco_A 394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI 472 (636)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence 8777654 899999999999999998888 7889999999999999655556778999999999999998 66
Q ss_pred chhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEE
Q 005619 421 PACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGL 500 (688)
Q Consensus 421 p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 500 (688)
|........ -....++.|+.|
T Consensus 473 ~~~~~~~~~-----------------------------------------------------------~~~~~l~~L~~L 493 (636)
T 4eco_A 473 PKNSLKDEN-----------------------------------------------------------ENFKNTYLLTSI 493 (636)
T ss_dssp CSSSSEETT-----------------------------------------------------------EECTTGGGCCEE
T ss_pred CHHHhcccc-----------------------------------------------------------ccccccCCccEE
Confidence 653321000 000124589999
Q ss_pred EccCCcccccCChhhh--ccCCCCeeeCCCCcCccCCCccccCCCCCCeEeC------CCCcccccCCcCCCCCCCCCEE
Q 005619 501 DLSSNKLTGDIPSEIC--DLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL------SHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 501 dLs~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~l~~l~~L~~L 572 (688)
+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..+.++++|++|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 99999999 7888887 99999999999999997 8999999999999999 5688999999999999999999
Q ss_pred ecCCCcCccCCCCCcccCCcCccccCCCCCCCC
Q 005619 573 DVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCG 605 (688)
Q Consensus 573 ~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~ 605 (688)
++++|++ +.+|... +..+......+|+..|-
T Consensus 572 ~Ls~N~l-~~ip~~~-~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 572 QIGSNDI-RKVNEKI-TPNISVLDIKDNPNISI 602 (636)
T ss_dssp ECCSSCC-CBCCSCC-CTTCCEEECCSCTTCEE
T ss_pred ECCCCcC-CccCHhH-hCcCCEEECcCCCCccc
Confidence 9999999 7888753 25666667777776553
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=404.39 Aligned_cols=450 Identities=20% Similarity=0.223 Sum_probs=316.2
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
+++|+++. +|..+. ++|++|+|++|.+++ ++...+.++++|++|++++|.+.. +.+..|.++++|++|++++|+
T Consensus 7 ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 7 RSKNGLIH-VPKDLS--QKTTILNISQNYISE--LWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp CTTSCCSS-CCCSCC--TTCSEEECCSSCCCC--CCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEEECCSSC
T ss_pred cCCCCccc-cccccc--ccccEEECCCCcccc--cChhhccccccccEEecCCCccCC-cChHHhhcccCCCEEecCCCc
Confidence 45666664 344444 666666666666654 333456666666666666665433 222345666666666666666
Q ss_pred CCCcchhhhCCCCCCEEECCCCcCCC-CCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhh
Q 005619 81 LGVIPNFLLHQFNLKYLDLSHNKLAG-NFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNM 159 (688)
Q Consensus 81 l~~lp~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~ 159 (688)
++.+|.. .+++|++|++++|.+++ .+|..+ +++++|++|++++|.+++. .
T Consensus 81 l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~-~~l~~L~~L~L~~n~l~~~-~------------------------- 131 (520)
T 2z7x_B 81 LVKISCH--PTVNLKHLDLSFNAFDALPICKEF-GNMSQLKFLGLSTTHLEKS-S------------------------- 131 (520)
T ss_dssp CCEEECC--CCCCCSEEECCSSCCSSCCCCGGG-GGCTTCCEEEEEESSCCGG-G-------------------------
T ss_pred eeecCcc--ccCCccEEeccCCccccccchhhh-ccCCcceEEEecCcccchh-h-------------------------
Confidence 6656554 55666666666666653 234333 3555555555555554431 1
Q ss_pred hhcCCCC--CEEEccCCCC--CcccchhhhcCC-CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc-------CCC
Q 005619 160 GIVLPKL--DCMNISKNSF--EGNIPSSIGKMQ-GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN-------FDG 227 (688)
Q Consensus 160 ~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-------i~~ 227 (688)
+..+++| ++|++++|.+ .+..|..+..+. ....+++++|.+.+.++...+..+++|+.|++++|. +.+
T Consensus 132 ~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 211 (520)
T 2z7x_B 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLS 211 (520)
T ss_dssp GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHH
T ss_pred ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeec
Confidence 1234445 6666666655 445555554443 233456666666666666666677777777777765 444
Q ss_pred cCcccccCCCCCCEEeccCCcCCCcccccc---cCCCCCCEEEccCCcCCCCCchhh-----hCCcCCcEEEccccccCC
Q 005619 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGL---LRSSELMVLDISNNHLSGHIPSWM-----GNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~ 299 (688)
..+ .+..+++|+.|++++|.+.+..+..+ ...++|++|++++|.+++.+|..+ +.+++|+.+++++|.+
T Consensus 212 ~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-- 288 (520)
T 2z7x_B 212 ILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-- 288 (520)
T ss_dssp HHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--
T ss_pred chh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--
Confidence 333 56777788888887777664322211 123578888888888887778777 7888888899988888
Q ss_pred CCc-ccccCC---CCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCC--cCc
Q 005619 300 NIP-VQFNNL---AILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG--RIP 373 (688)
Q Consensus 300 ~~~-~~l~~l---~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~ 373 (688)
.+| ..+..+ .+|+.|++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++++|++++ .+|
T Consensus 289 ~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~ 367 (520)
T 2z7x_B 289 GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367 (520)
T ss_dssp CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHH
T ss_pred ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccch
Confidence 344 444444 679999999998865432 1368899999999999998889999999999999999999986 566
Q ss_pred hhhhcCCCccEEeccCCcCCCCCch-hhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccccc
Q 005619 374 HQINEHSNLRALLLRGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADI 452 (688)
Q Consensus 374 ~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (688)
..+..+++|++|++++|++.+.+|. .+..+++|+.|++++|++++.+|..+
T Consensus 368 ~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l---------------------------- 419 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL---------------------------- 419 (520)
T ss_dssp HHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSC----------------------------
T ss_pred HHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhh----------------------------
Confidence 7899999999999999999985665 48889999999999999987665432
Q ss_pred ccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCc
Q 005619 453 RNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLS 532 (688)
Q Consensus 453 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 532 (688)
.+.|+.||+++|+++ .+|..+..+++|+.|+|++|+++
T Consensus 420 -----------------------------------------~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 457 (520)
T 2z7x_B 420 -----------------------------------------PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK 457 (520)
T ss_dssp -----------------------------------------CTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred -----------------------------------------cccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence 246899999999999 78888889999999999999999
Q ss_pred cCCCc-cccCCCCCCeEeCCCCcccccCC
Q 005619 533 GSIPE-SFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 533 ~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+ +|. .+..+++|+.|++++|++++..+
T Consensus 458 ~-l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 458 S-VPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp C-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred c-cCHHHhccCCcccEEECcCCCCcccCC
Confidence 5 555 49999999999999999997543
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=415.33 Aligned_cols=474 Identities=18% Similarity=0.231 Sum_probs=274.1
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEc-cCCCCcccccccCCCC---Ccc--eeEEE---------C-CCCCC
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQL-SMEADLLQVKIENCLP---TFQ--LKVLS---------L-PNCNL 81 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~L-s~~~~~~~~~~~~~~~---l~~--L~~L~---------l-~~n~l 81 (688)
.+++.|+|+++.+.| .+| ..+++|++|++|+| +.|.+.+..+...... +.. ++.+. . ....+
T Consensus 323 ~~V~~L~Ls~~~L~G-~ip-~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~ 400 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKG-RVP-DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL 400 (876)
T ss_dssp SCEEEEECTTTCCEE-EEC-GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEEEECccCCCCC-cCc-hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence 578889999999888 777 57889999999999 6665544422211000 000 00000 0 00000
Q ss_pred C------------CcchhhhCCCCCCEEECCC--CcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEcc
Q 005619 82 G------------VIPNFLLHQFNLKYLDLSH--NKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDIS 147 (688)
Q Consensus 82 ~------------~lp~~~~~l~~L~~L~Ls~--n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls 147 (688)
. ..+........++.+.+.. |++++ +|..+ .++++|++|+|++|.+++..++.... ..+
T Consensus 401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l-~~L~~L~~L~Ls~N~Lsg~~i~~~~~-----~~s 473 (876)
T 4ecn_A 401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAI-QRLTKLQIIYFANSPFTYDNIAVDWE-----DAN 473 (876)
T ss_dssp CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGG-GGCTTCCEEEEESCCCCGGGBSSSCS-----CTT
T ss_pred hHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHH-hcCCCCCEEECcCCcCCCCccccccc-----ccc
Confidence 0 0000001222344444443 67775 77654 57888888888888887621111000 011
Q ss_pred CCCCCCCCChhh-hhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCc-Ccc-ccCchh------hcCCCCCCEE
Q 005619 148 SNNFTGKLPQNM-GIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNK-FAG-ELSQSP------VTNCFSLEWL 218 (688)
Q Consensus 148 ~n~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~------~~~l~~L~~L 218 (688)
.|...+.+|..+ +..+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+ +..+++|+.|
T Consensus 474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 122223344443 2245555555555555555555555555555555555555 554 444321 1233466666
Q ss_pred EcccCcCCCcCcc--cccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcC-CcEEEcccc
Q 005619 219 QLSNNNFDGQIFP--NYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSN-LYILSMSKN 295 (688)
Q Consensus 219 ~L~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~l~~n 295 (688)
++++|.++ .+|. .+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 66666666 4455 5666666666666666666 455 5666666666666666666 56666666666 777777777
Q ss_pred ccCCCCcccccCCCC--CcEEEccCCcCcccccccc------ccCccceEeeecCccccCCchhcc-CCCCccEEeCcCC
Q 005619 296 LLEGNIPVQFNNLAI--LQILDISENNLSGSMISTL------NLSSVEHLYLQSNALGGSIPNTIF-RGSALETLDLRDN 366 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~--L~~L~Ls~n~l~~~~~~~~------~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n 366 (688)
.+. .+|..+..++. |+.|++++|++.+..+... .+++|+.|++++|.++ .+|..+. .+++|+.|++++|
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNN 707 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCC
Confidence 666 45555555433 7777777777766543222 3457888888888887 5555543 6788888888888
Q ss_pred cCCCcCchhhhc--------CCCccEEeccCCcCCCCCchhhc--CCCCCCEEEccCCcCccccchhhhhhhhcccCCcc
Q 005619 367 YFFGRIPHQINE--------HSNLRALLLRGNYLQGPIPHQLC--QLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRY 436 (688)
Q Consensus 367 ~l~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~ 436 (688)
++. .+|..+.. +++|+.|+|++|+++ .+|..+. .+++|+.|++++|++++ +|..+.+
T Consensus 708 ~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~---------- 774 (876)
T 4ecn_A 708 LMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLN---------- 774 (876)
T ss_dssp CCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGG----------
T ss_pred cCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhc----------
Confidence 886 44443332 238888999998888 6777776 88888888888888886 5655433
Q ss_pred cccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccC------Cccccc
Q 005619 437 LSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSS------NKLTGD 510 (688)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~------N~l~~~ 510 (688)
+++|+.|+|++ |++.+.
T Consensus 775 ---------------------------------------------------------L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 775 ---------------------------------------------------------SSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp ---------------------------------------------------------CTTCCEEECCCCBCTTCCBCCCC
T ss_pred ---------------------------------------------------------CCCCCEEECCCCCCccccccccc
Confidence 46677888876 445555
Q ss_pred CChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcC
Q 005619 511 IPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579 (688)
Q Consensus 511 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 579 (688)
+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|||++|++....+..+.....+..+.+++|++
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTT
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCc
Confidence 555555555555555555555 34554443 3555555555555544444444333444444444443
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-45 Score=412.23 Aligned_cols=435 Identities=18% Similarity=0.251 Sum_probs=327.6
Q ss_pred cceeEEECCCCCC-CCcchhhhCCCCCCEEEC-CCCcCCCCCchHHhhCCCCCc-----E-----------EE-------
Q 005619 69 FQLKVLSLPNCNL-GVIPNFLLHQFNLKYLDL-SHNKLAGNFPTWLLENNTKLE-----V-----------LY------- 123 (688)
Q Consensus 69 ~~L~~L~l~~n~l-~~lp~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~l~~L~-----~-----------L~------- 123 (688)
.+++.|+|+++.+ +.+|+.++++++|++|+| ++|.+.|..|.........+. . .+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 5789999999999 788999999999999999 888776653321100000000 0 00
Q ss_pred -----ccCC-CCCCCCCCCCCCCcCEEEccC--CCCCCCCChhhhhcCCCCCEEEccCCCCCc-----------------
Q 005619 124 -----LTNN-SFSGFQLTSAQHGLISLDISS--NNFTGKLPQNMGIVLPKLDCMNISKNSFEG----------------- 178 (688)
Q Consensus 124 -----L~~n-~l~~~~~~~~~~~L~~L~ls~--n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 178 (688)
+..+ ..... .......++.+.+.. |++++ +|..+. .+++|++|++++|.+++
T Consensus 403 l~~~~l~~~~~~~~i-~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g 479 (876)
T 4ecn_A 403 LLQDAINRNPEMKPI-KKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479 (876)
T ss_dssp HHHHHHHTCTTSCCC-CCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHH
T ss_pred HHHHHhhhCcccccc-ccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCcccccccccccccccc
Confidence 0000 00000 001222344444443 77775 888776 79999999999999987
Q ss_pred ccchhhh--cCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc-CCC-cCcccccCC-------CCCCEEeccCC
Q 005619 179 NIPSSIG--KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN-FDG-QIFPNYVNL-------TRLLFLYLDNN 247 (688)
Q Consensus 179 ~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-i~~-~~~~~~~~l-------~~L~~L~L~~n 247 (688)
.+|+.++ ++++|++|++++|.+.+.+|.. +..+++|+.|++++|. +++ .+|..+..+ ++|+.|++++|
T Consensus 480 ~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~-l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N 558 (876)
T 4ecn_A 480 YENEELSWSNLKDLTDVELYNCPNMTQLPDF-LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558 (876)
T ss_dssp HTTSCCCGGGCTTCCEEEEESCTTCCSCCGG-GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred cCChhhhhccCCCCCEEECcCCCCCccChHH-HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence 3788877 8999999999999988888854 5788999999999997 887 667655544 49999999999
Q ss_pred cCCCcccc--cccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCC-CcEEEccCCcCccc
Q 005619 248 HFSGKIKD--GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAI-LQILDISENNLSGS 324 (688)
Q Consensus 248 ~l~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~ 324 (688)
.+. .+|. .+..+++|+.|++++|.++ .+| .++.+++|+.|++++|.+. .+|..+..+++ |++|++++|.++..
T Consensus 559 ~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l 634 (876)
T 4ecn_A 559 NLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI 634 (876)
T ss_dssp CCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC
T ss_pred cCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC
Confidence 998 7777 8888999999999999988 777 7888999999999999988 77888888888 99999999998844
Q ss_pred ccccc-cc--CccceEeeecCccccCCchhc---c--CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCC
Q 005619 325 MISTL-NL--SSVEHLYLQSNALGGSIPNTI---F--RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI 396 (688)
Q Consensus 325 ~~~~~-~~--~~L~~L~L~~n~l~~~~~~~~---~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 396 (688)
+..+ .. ++|+.|++++|.+.+.+|... . .+++|+.|++++|+++...+..+..+++|+.|+|++|+++ .+
T Consensus 635 -p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~i 712 (876)
T 4ecn_A 635 -PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SI 712 (876)
T ss_dssp -CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CC
T ss_pred -chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-cc
Confidence 4444 33 459999999999987665322 2 3458999999999997544444457889999999999998 55
Q ss_pred chhhcC--------CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCC
Q 005619 397 PHQLCQ--------LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGID 468 (688)
Q Consensus 397 ~~~~~~--------l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 468 (688)
|..+.. |++|+.|+|++|+++ .+|..+..
T Consensus 713 p~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~------------------------------------------ 749 (876)
T 4ecn_A 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA------------------------------------------ 749 (876)
T ss_dssp CTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST------------------------------------------
T ss_pred ChHHhccccccccccCCccEEECCCCCCc-cchHHhhh------------------------------------------
Confidence 554333 238999999999988 66655420
Q ss_pred CCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCC------CcCccCCCccccCC
Q 005619 469 GRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSH------NFLSGSIPESFSNL 542 (688)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~------N~l~~~~p~~~~~l 542 (688)
..+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..|+++
T Consensus 750 -----------------------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 750 -----------------------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp -----------------------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred -----------------------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 115788999999999997 788899999999999976 78888999999999
Q ss_pred CCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCC
Q 005619 543 KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583 (688)
Q Consensus 543 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 583 (688)
++|+.|+|++|++ +.+|..+. ++|+.||+++|++...-
T Consensus 806 ~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 806 PSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp SSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 9999999999999 68888765 68999999999886543
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=390.77 Aligned_cols=491 Identities=18% Similarity=0.154 Sum_probs=359.4
Q ss_pred ccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCC
Q 005619 41 ANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKL 119 (688)
Q Consensus 41 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 119 (688)
..+...++++++++.+.. +|.. +. ++|++|++++|.+..++ ..+.++++|++|++++|++++..|.. +.++++|
T Consensus 28 ~~~~~~~~l~ls~~~L~~-ip~~-~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L 102 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTH-VPKD-LP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHV-FLFNQDL 102 (562)
T ss_dssp -----CCEEECTTSCCCS-CCTT-SC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTT-TTTCTTC
T ss_pred cccCCCcEEEcCCCCCcc-CCCC-CC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHH-hCCCCCC
Confidence 345556889999887653 4443 22 68899999999997775 57888999999999999988554544 4688999
Q ss_pred cEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCC-CCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCC--CEEEcc
Q 005619 120 EVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG-KLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGL--RLLDVS 196 (688)
Q Consensus 120 ~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~ 196 (688)
++|++++|.++.++.. .+++|++|++++|++++ .+|..+. .+++|++|++++|.+++. .+..+++| ++|+++
T Consensus 103 ~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~ 177 (562)
T 3a79_B 103 EYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLD 177 (562)
T ss_dssp CEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEE
T ss_pred CEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEee
Confidence 9999999998876555 78889999999999884 2345554 788999999999888753 34555555 899999
Q ss_pred CCcC--ccccCchhhcCCC-CCCEEEcccCcCCCcCcc-cccCCCCCCEEeccCCcCC----CcccccccCCCCCCEEEc
Q 005619 197 SNKF--AGELSQSPVTNCF-SLEWLQLSNNNFDGQIFP-NYVNLTRLLFLYLDNNHFS----GKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 197 ~n~l--~~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~L~~L~L 268 (688)
+|.+ .+..+.. +..+. ..-.+++++|.+.+..+. .+..+++|+.+++++|... ......+..++.|+.+++
T Consensus 178 ~n~l~~~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L 256 (562)
T 3a79_B 178 LVSYHIKGGETES-LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTL 256 (562)
T ss_dssp ESSCCCCSSSCCE-EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEE
T ss_pred cccccccccCccc-ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEe
Confidence 9888 6554443 23332 112557777777654433 4567788999999887521 012234677888888988
Q ss_pred cCCcCCCCCchh---hhCCcCCcEEEccccccCCCCcccc-----cCCCCCcEEEccCCcCcccccccc----ccCccce
Q 005619 269 SNNHLSGHIPSW---MGNFSNLYILSMSKNLLEGNIPVQF-----NNLAILQILDISENNLSGSMISTL----NLSSVEH 336 (688)
Q Consensus 269 s~n~l~~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~Ls~n~l~~~~~~~~----~~~~L~~ 336 (688)
+++.+.+..... ....++|++|++++|.+.+.+|..+ ..++.|+.++++.+.+ ..+...+ ...+|++
T Consensus 257 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~ 335 (562)
T 3a79_B 257 QHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKM 335 (562)
T ss_dssp EEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSE
T ss_pred cCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceE
Confidence 887766322111 1224589999999999998888877 6777777777777776 2221111 2367999
Q ss_pred EeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCC--chhhcCCCCCCEEEccCC
Q 005619 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI--PHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 337 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~ls~n 414 (688)
|++++|.+.... ....+++|++|++++|++++..|..+..+++|+.|++++|++++.. |..+..+++|+.|++++|
T Consensus 336 L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 336 LSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred EEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 999999986322 1257789999999999999988999999999999999999999643 567899999999999999
Q ss_pred cCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccc
Q 005619 415 RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494 (688)
Q Consensus 415 ~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (688)
++++.+|.... ..+
T Consensus 414 ~l~~~~~~~~~------------------------------------------------------------------~~l 427 (562)
T 3a79_B 414 SLNSHAYDRTC------------------------------------------------------------------AWA 427 (562)
T ss_dssp CCBSCCSSCCC------------------------------------------------------------------CCC
T ss_pred cCCCccChhhh------------------------------------------------------------------cCc
Confidence 99875664311 115
Q ss_pred ccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEec
Q 005619 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDV 574 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 574 (688)
+.|+.|++++|++++..|..+. ++|+.|+|++|+++ .+|..+.++++|+.|+|++|++++..+..+..+++|++|++
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 504 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEEC
T ss_pred ccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEe
Confidence 7899999999999988776554 79999999999999 67877779999999999999999544444999999999999
Q ss_pred CCCcCccCCCCCcccCCcCccc--cCCCCCCCCCCCCCCCCC
Q 005619 575 SYNDLSGPIPDKEQFSTFDESS--YRGNLHLCGPPINKSCTN 614 (688)
Q Consensus 575 s~N~l~~~~p~~~~~~~~~~~~--~~~n~~l~~~p~~~~C~~ 614 (688)
++|++.|.||....+..|.... ...+..-|+.|....|..
T Consensus 505 ~~N~~~c~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 546 (562)
T 3a79_B 505 HDNPWDCTCPGIRYLSEWINKHSGVVRNSAGSVAPDSAKCSG 546 (562)
T ss_dssp CSCCBCCCHHHHHHHHHHHHHTTTTEECSSSSBCSSSSCBSS
T ss_pred cCCCcCCCcchHHHHHHHHHhcCCcccccccCCCCCCCccCC
Confidence 9999999998543323221110 111222347777788875
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=373.34 Aligned_cols=379 Identities=19% Similarity=0.233 Sum_probs=299.7
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|+++++|++|++++|.+.+.++...+..+++|++|+++
T Consensus 13 ~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 34566666665 5665 2 36777777777777776677777788888888888877666766667777888888888
Q ss_pred cCcCCCcCcccccCCCCCCEEeccCCcCCCccccc--ccCCCCCCEEEccCCcCCCCCchh-hhCCcCCcEEEccccccC
Q 005619 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDG--LLRSSELMVLDISNNHLSGHIPSW-MGNFSNLYILSMSKNLLE 298 (688)
Q Consensus 222 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 298 (688)
+|.+++..+..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 88877777777788888888888888877644443 777788888888888887776665 677888888888888887
Q ss_pred CCCcccccCC--CCCcEEEccCCcCccccccc---------cccCccceEeeecCccccCCchhccCC---CCccEEeCc
Q 005619 299 GNIPVQFNNL--AILQILDISENNLSGSMIST---------LNLSSVEHLYLQSNALGGSIPNTIFRG---SALETLDLR 364 (688)
Q Consensus 299 ~~~~~~l~~l--~~L~~L~Ls~n~l~~~~~~~---------~~~~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~ 364 (688)
+..+..+..+ .+|+.|++++|.+.+..+.. +.+++|++|++++|.+++..|..+... ++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 7777777665 67888888888877655432 245678888888888887777666543 778888888
Q ss_pred CCcCCCc----------Cchhhhc--CCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhccc
Q 005619 365 DNYFFGR----------IPHQINE--HSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432 (688)
Q Consensus 365 ~n~l~~~----------~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~ 432 (688)
+|...+. .+..+.. .++|+.|++++|.+.+..|..+..+++|++|++++|++++..|..+.+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------ 321 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------ 321 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------
Confidence 8755432 1222222 368999999999999999999999999999999999998766665533
Q ss_pred CCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCC
Q 005619 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP 512 (688)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 512 (688)
++.|+.|+|++|.+++..|
T Consensus 322 -------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 322 -------------------------------------------------------------LTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSCCCEECG
T ss_pred -------------------------------------------------------------cccCCEEECCCCccCCcCh
Confidence 5689999999999999999
Q ss_pred hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCc
Q 005619 513 SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 592 (688)
..|+.+++|+.|+|++|++++..|..|+++++|++|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus 341 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~ 420 (455)
T 3v47_A 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 420 (455)
T ss_dssp GGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred hHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999888888899999999999999999999976555444
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-41 Score=378.83 Aligned_cols=478 Identities=20% Similarity=0.181 Sum_probs=380.9
Q ss_pred CCCCCCcccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCC
Q 005619 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCN 80 (688)
Q Consensus 1 Ls~n~~~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~ 80 (688)
||+|+|+++.+.+|.++++|++|||++|.+++ ++...|.++++|++|+|++|++. .++...|.++++|++|++++|+
T Consensus 59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~--i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 59 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECTTCCCCE--ECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTSC
T ss_pred eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCC--cChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCCc
Confidence 68999999999999999999999999999985 55568999999999999999864 5666679999999999999999
Q ss_pred CCCcch-hhhCCCCCCEEECCCCcCCCC-CchHHhhCCCCCcEEEccCCCCCCCCCCC------CCCCcCEEEccCCCCC
Q 005619 81 LGVIPN-FLLHQFNLKYLDLSHNKLAGN-FPTWLLENNTKLEVLYLTNNSFSGFQLTS------AQHGLISLDISSNNFT 152 (688)
Q Consensus 81 l~~lp~-~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~~L~~L~ls~n~~~ 152 (688)
++.+|. .+.++++|++|++++|.+++. +|. .+..+++|++|++++|++++..... .......++++.|.+.
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~ 214 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 214 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCC
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCccc
Confidence 988865 589999999999999999753 344 4568999999999999998754322 1233557888888887
Q ss_pred CCCChhhhhcCCCCCEEEccCCCCCc-ccchhhhcCCCCCEEEccCCcCcc-----------------------------
Q 005619 153 GKLPQNMGIVLPKLDCMNISKNSFEG-NIPSSIGKMQGLRLLDVSSNKFAG----------------------------- 202 (688)
Q Consensus 153 ~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~----------------------------- 202 (688)
.++...+ ....++.+++.+|.... ..+..+..+..++...+..+....
T Consensus 215 -~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 215 -FIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp -EECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred -ccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence 5555554 34556777777765442 223345555555554443211100
Q ss_pred ---ccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCch
Q 005619 203 ---ELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPS 279 (688)
Q Consensus 203 ---~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~ 279 (688)
......+..+.+++.+.+.++.+... ..+.....++.|++.+|.+....+. .+..|+.++++.|......
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~~-- 365 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNAF-- 365 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCBC--
T ss_pred ccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCCc--
Confidence 00011234456788888888877643 3456678999999999988755443 4578999999999877443
Q ss_pred hhhCCcCCcEEEccccccCC--CCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCc-hhccCCC
Q 005619 280 WMGNFSNLYILSMSKNLLEG--NIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIP-NTIFRGS 356 (688)
Q Consensus 280 ~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~~~ 356 (688)
....+++|+.++++.|.+.. ..+..+..+.+|+.+++..+...........+++|+.+++..+......+ ..+..++
T Consensus 366 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~ 445 (635)
T 4g8a_A 366 SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 445 (635)
T ss_dssp CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred ccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccc
Confidence 34578999999999998853 45666778899999999999988776666689999999999887765544 4567789
Q ss_pred CccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC-CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCc
Q 005619 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ-GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSR 435 (688)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~ 435 (688)
+++.++++.|.+.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|++++|++++..|..+.+
T Consensus 446 ~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~--------- 516 (635)
T 4g8a_A 446 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS--------- 516 (635)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT---------
T ss_pred ccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC---------
Confidence 9999999999999888999999999999999999854 457888999999999999999999877776643
Q ss_pred ccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhh
Q 005619 436 YLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEI 515 (688)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~ 515 (688)
+++|+.|+|++|++++..|..|
T Consensus 517 ----------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~ 538 (635)
T 4g8a_A 517 ----------------------------------------------------------LSSLQVLNMSHNNFFSLDTFPY 538 (635)
T ss_dssp ----------------------------------------------------------CTTCCEEECTTSCCCBCCCGGG
T ss_pred ----------------------------------------------------------CCCCCEEECCCCcCCCCChhHH
Confidence 5789999999999999999999
Q ss_pred hccCCCCeeeCCCCcCccCCCccccCC-CCCCeEeCCCCccccc
Q 005619 516 CDLQNIHGLNLSHNFLSGSIPESFSNL-KMIESLDLSHNKLNGQ 558 (688)
Q Consensus 516 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~ 558 (688)
..+++|++|+|++|+|++.+|..+..+ ++|+.|+|++|.+++.
T Consensus 539 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 539 KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred hCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999998 6899999999999853
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-42 Score=379.98 Aligned_cols=457 Identities=19% Similarity=0.236 Sum_probs=359.4
Q ss_pred CCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCc-chhhhCCCCC
Q 005619 16 NLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVI-PNFLLHQFNL 94 (688)
Q Consensus 16 ~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~l-p~~~~~l~~L 94 (688)
.+...+++|+++|.++. +|. .+ .++|++|++++|.+. .++...+.++++|++|++++|+++.+ |..+.++++|
T Consensus 29 ~~~~~~~l~ls~~~L~~--ip~-~~--~~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 102 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH--VPK-DL--PPRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDL 102 (562)
T ss_dssp ----CCEEECTTSCCCS--CCT-TS--CTTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTC
T ss_pred ccCCCcEEEcCCCCCcc--CCC-CC--CCCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCC
Confidence 34556899999999885 662 23 278999999998865 44445688999999999999999777 6778899999
Q ss_pred CEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC---CCCCCcCEEEccCCCCCCCCChhhhhcCCCC--CEE
Q 005619 95 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT---SAQHGLISLDISSNNFTGKLPQNMGIVLPKL--DCM 169 (688)
Q Consensus 95 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L--~~L 169 (688)
++|++++|+++ .+|.. .+++|++|++++|.+++.+.+ ..+++|++|++++|.+++.. + ..+++| ++|
T Consensus 103 ~~L~Ls~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~---~-~~l~~L~L~~L 174 (562)
T 3a79_B 103 EYLDVSHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD---L-LPVAHLHLSCI 174 (562)
T ss_dssp CEEECTTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT---T-GGGTTSCEEEE
T ss_pred CEEECCCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc---h-hhhhhceeeEE
Confidence 99999999998 67764 789999999999999876543 37789999999999987422 2 245566 999
Q ss_pred EccCCCC--CcccchhhhcCC-CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC----CcCcccccCCCCCCEE
Q 005619 170 NISKNSF--EGNIPSSIGKMQ-GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD----GQIFPNYVNLTRLLFL 242 (688)
Q Consensus 170 ~l~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L 242 (688)
++++|.+ ++..|..+..+. ..-.+++++|.+.+.++...+..+++|+.+++++|... ......+..+++|+.+
T Consensus 175 ~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L 254 (562)
T 3a79_B 175 LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNV 254 (562)
T ss_dssp EEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEE
T ss_pred EeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEE
Confidence 9999998 777888777654 12256888898888788777788899999999998521 1123456788999999
Q ss_pred eccCCcCCCccccc---ccCCCCCCEEEccCCcCCCCCchhh-----hCCcCCcEEEccccccCCCCc-ccccC---CCC
Q 005619 243 YLDNNHFSGKIKDG---LLRSSELMVLDISNNHLSGHIPSWM-----GNFSNLYILSMSKNLLEGNIP-VQFNN---LAI 310 (688)
Q Consensus 243 ~L~~n~l~~~~~~~---~~~~~~L~~L~Ls~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~l~~---l~~ 310 (688)
++.++.+.+..... ....++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+
T Consensus 255 ~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 255 TLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCC
T ss_pred EecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCc
Confidence 99888776432111 1234589999999999998888877 6677777777777766 233 22222 267
Q ss_pred CcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCc--CchhhhcCCCccEEecc
Q 005619 311 LQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR--IPHQINEHSNLRALLLR 388 (688)
Q Consensus 311 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~ 388 (688)
|++|++++|.+..... ...+++|++|++++|.+++..|..+..+++|++|++++|++++. .|..+..+++|+.|+++
T Consensus 333 L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 333 IKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred ceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 9999999999865432 13788999999999999988999999999999999999999763 35678999999999999
Q ss_pred CCcCCCCCc-hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCC
Q 005619 389 GNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGI 467 (688)
Q Consensus 389 ~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (688)
+|++++.+| ..+..+++|+.|++++|++++.+|..+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l------------------------------------------- 448 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL------------------------------------------- 448 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC-------------------------------------------
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh-------------------------------------------
Confidence 999998455 458889999999999999986555422
Q ss_pred CCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCcc-ccCCCCCC
Q 005619 468 DGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPES-FSNLKMIE 546 (688)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~ 546 (688)
.+.|+.|||++|+++ .+|..+..+++|+.|+|++|++++ +|.. ++.+++|+
T Consensus 449 --------------------------~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~ 500 (562)
T 3a79_B 449 --------------------------PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQ 500 (562)
T ss_dssp --------------------------CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCC
T ss_pred --------------------------cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCC
Confidence 146899999999999 677777799999999999999995 5554 99999999
Q ss_pred eEeCCCCcccccCC
Q 005619 547 SLDLSHNKLNGQIP 560 (688)
Q Consensus 547 ~L~Ls~N~l~~~~p 560 (688)
.|++++|++.+..|
T Consensus 501 ~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 501 YIWLHDNPWDCTCP 514 (562)
T ss_dssp CEECCSCCBCCCHH
T ss_pred EEEecCCCcCCCcc
Confidence 99999999997654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=347.78 Aligned_cols=383 Identities=21% Similarity=0.207 Sum_probs=270.5
Q ss_pred CCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCC--CCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEc
Q 005619 94 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQL--TSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNI 171 (688)
Q Consensus 94 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l 171 (688)
-+.++.+++.++ .+|. + .++|++|++++|.+++... ...+++|++|++++|.+.+.++...+..+++|++|++
T Consensus 12 ~~~~~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L 86 (455)
T 3v47_A 12 GYNAICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL 86 (455)
T ss_dssp TTEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC
T ss_pred ccccCcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC
Confidence 346777777776 6665 2 3677777777777776422 2366777777777777765665555556777777777
Q ss_pred cCCCCCcccchhhhcCCCCCEEEccCCcCccccC-chhhcCCCCCCEEEcccCcCCCcCccc-ccCCCCCCEEeccCCcC
Q 005619 172 SKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELS-QSPVTNCFSLEWLQLSNNNFDGQIFPN-YVNLTRLLFLYLDNNHF 249 (688)
Q Consensus 172 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~~l~~L~~L~L~~n~l 249 (688)
++|.+++..|..|+++++|++|++++|.+.+.++ ...+..+++|++|++++|.+++..+.. +..+++|++|++++|.+
T Consensus 87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 7777776667777777777777777777664332 223456667777777777776655544 56667777777777766
Q ss_pred CCcccccccCC--CCCCEEEccCCcCCCCCchhh--------hCCcCCcEEEccccccCCCCcccccCC---CCCcEEEc
Q 005619 250 SGKIKDGLLRS--SELMVLDISNNHLSGHIPSWM--------GNFSNLYILSMSKNLLEGNIPVQFNNL---AILQILDI 316 (688)
Q Consensus 250 ~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~l~~l---~~L~~L~L 316 (688)
.+..+..+..+ .+|+.|++++|.+.+..+..+ ..+++|++|++++|.+.+..+..+... ++|+.|++
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l 246 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence 66655555443 456666666666664433322 234556666666666655544444332 55566666
Q ss_pred cCCcCccccccccccCccceEeeecCccccCCchhcc--CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC
Q 005619 317 SENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIF--RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG 394 (688)
Q Consensus 317 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 394 (688)
++|...+...... .+.+..+..+. ..++|++|++++|++.+..|..++.+++|++|++++|++++
T Consensus 247 ~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 313 (455)
T 3v47_A 247 SNSYNMGSSFGHT-------------NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK 313 (455)
T ss_dssp TTCTTTSCCTTCC-------------SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred ccccccccccchh-------------hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc
Confidence 6555443221111 11111111222 23689999999999999999999999999999999999998
Q ss_pred CCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCc
Q 005619 395 PIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGT 474 (688)
Q Consensus 395 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (688)
..|..+..+++|++|++++|.+++..|..+.+
T Consensus 314 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------ 345 (455)
T 3v47_A 314 IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN------------------------------------------------ 345 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCEECGGGGTT------------------------------------------------
T ss_pred cChhHhcCcccCCEEECCCCccCCcChhHhcC------------------------------------------------
Confidence 88999999999999999999998666665533
Q ss_pred ceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCc
Q 005619 475 QVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 554 (688)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 554 (688)
++.|+.|||++|++++..|..|..+++|+.|+|++|++++..+..++.+++|+.|++++|+
T Consensus 346 -------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 346 -------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp -------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred -------------------cccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 5789999999999999999999999999999999999998777888999999999999999
Q ss_pred ccccCCc
Q 005619 555 LNGQIPP 561 (688)
Q Consensus 555 l~~~~p~ 561 (688)
+++..|.
T Consensus 407 l~~~~~~ 413 (455)
T 3v47_A 407 WDCSCPR 413 (455)
T ss_dssp BCCCTTT
T ss_pred cccCCCc
Confidence 9988763
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=349.37 Aligned_cols=306 Identities=23% Similarity=0.238 Sum_probs=140.4
Q ss_pred cceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCC-------------CcEEEccCCCCCCCCCC
Q 005619 69 FQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTK-------------LEVLYLTNNSFSGFQLT 135 (688)
Q Consensus 69 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-------------L~~L~L~~n~l~~~~~~ 135 (688)
++|++|++++|.++++|..++++++|++|++++|.++|.+|..+ ..+++ +++|++++|.+++++.
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~-~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~- 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE- 88 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTS-CCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCS-
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCccc-ccchhcchhhhhhhhccCCCEEEecCCccccCCC-
Confidence 45555555555555566556666666666666665555555443 23333 3555555555554322
Q ss_pred CCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCC
Q 005619 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL 215 (688)
Q Consensus 136 ~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 215 (688)
..++|++|++++|.+++ +|. ..++|++|++++|.+++. +.. .++|++|++++|.++ .+|. +..+++|
T Consensus 89 -~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~-~lp~--~~~l~~L 155 (454)
T 1jl5_A 89 -LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE-KLPE--LQNSSFL 155 (454)
T ss_dssp -CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS-SCCC--CTTCTTC
T ss_pred -CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC-CCcc--cCCCCCC
Confidence 23455555555555552 442 134555555555555531 111 145555555555555 2442 4455555
Q ss_pred CEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccc
Q 005619 216 EWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295 (688)
Q Consensus 216 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 295 (688)
++|++++|.+++ +|.. .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|.. .++|++|++++|
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n 225 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNN 225 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSS
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCC
Confidence 555555555553 2221 1355555555555553 23 35555555555555555553 2221 135555555555
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchh
Q 005619 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQ 375 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 375 (688)
.+. .+| .+..+++|++|++++|++++.+. .+++|++|++++|.+++ +|.. .++|++|++++|++++. |.
T Consensus 226 ~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~- 294 (454)
T 1jl5_A 226 ILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE- 294 (454)
T ss_dssp CCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC-
T ss_pred cCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC-
Confidence 555 333 25555556666665555554322 12455555665555553 3322 24566666666655441 11
Q ss_pred hhcCCCccEEeccCCcCCCCCchhhcCC-CCCCEEEccCCcCc
Q 005619 376 INEHSNLRALLLRGNYLQGPIPHQLCQL-RKLSIMDLSHNRLN 417 (688)
Q Consensus 376 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~ls~n~l~ 417 (688)
..++|+.|++++|++++. + .+ ++|+.|++++|+++
T Consensus 295 --~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~ 330 (454)
T 1jl5_A 295 --LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLI 330 (454)
T ss_dssp --CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCS
T ss_pred --cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCccc
Confidence 014566666666665531 1 22 35666666666655
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-40 Score=348.14 Aligned_cols=425 Identities=23% Similarity=0.293 Sum_probs=223.3
Q ss_pred chhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhC
Q 005619 11 PSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLH 90 (688)
Q Consensus 11 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~ 90 (688)
|+.+ +.++|++|++++|.+ + .+| ..++++++|++|++++|.+.+.++. .++.+.+|+.+++.+|.
T Consensus 5 p~~~-~~~~L~~L~l~~n~l-~-~iP-~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~---------- 69 (454)
T 1jl5_A 5 PRNV-SNTFLQEPLRHSSNL-T-EMP-VEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCL---------- 69 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHH----------
T ss_pred cccc-ccccchhhhcccCch-h-hCC-hhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhh----------
Confidence 4434 458999999999998 4 677 5789999999999998887666554 47777776443333321
Q ss_pred CCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEE
Q 005619 91 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMN 170 (688)
Q Consensus 91 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~ 170 (688)
..++++|++++|.++ .+|. ..++|++|++++|.++++ +...++|++|++++|+++ .++. ..++|++|+
T Consensus 70 ~~~l~~L~l~~~~l~-~lp~----~~~~L~~L~l~~n~l~~l--p~~~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~ 137 (454)
T 1jl5_A 70 DRQAHELELNNLGLS-SLPE----LPPHLESLVASCNSLTEL--PELPQSLKSLLVDNNNLK-ALSD----LPPLLEYLG 137 (454)
T ss_dssp HHTCSEEECTTSCCS-CCCS----CCTTCSEEECCSSCCSSC--CCCCTTCCEEECCSSCCS-CCCS----CCTTCCEEE
T ss_pred ccCCCEEEecCCccc-cCCC----CcCCCCEEEccCCcCCcc--ccccCCCcEEECCCCccC-cccC----CCCCCCEEE
Confidence 023455555555554 2332 124555555555555542 223355555555555555 2332 124666667
Q ss_pred ccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCC
Q 005619 171 ISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS 250 (688)
Q Consensus 171 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~ 250 (688)
+++|.+++ +| .++++++|++|++++|.++ .+|.. ..+|++|++++|.+++ .+ .+..+++|++|++++|.++
T Consensus 138 L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~ 208 (454)
T 1jl5_A 138 VSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLK 208 (454)
T ss_dssp CCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred CcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCC
Confidence 76666664 44 4666777777777777666 34432 2467777777777765 23 5677777777777777776
Q ss_pred CcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccc
Q 005619 251 GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLN 330 (688)
Q Consensus 251 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~ 330 (688)
+ +|.. .++|++|++++|.++ .+|. ++.+++|++|++++|++++ +|. ..++|++|++++|++++.+. .
T Consensus 209 ~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~l~~---~ 275 (454)
T 1jl5_A 209 K-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDLPE---L 275 (454)
T ss_dssp S-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCCCC---C
T ss_pred c-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccccCc---c
Confidence 4 3332 247778888887777 4553 7777788888888887774 333 23678888888888776433 2
Q ss_pred cCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcC-CCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 331 LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
+++|++|++++|.+++ ++.. .++|+.|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|+.|
T Consensus 276 ~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L 342 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERL 342 (454)
T ss_dssp CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEE
Confidence 4678888888888775 2211 25788889988888652 2 23 478999999999886 5543 5789999
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|+++ .+|. .
T Consensus 343 ~L~~N~l~-~lp~-~----------------------------------------------------------------- 355 (454)
T 1jl5_A 343 IASFNHLA-EVPE-L----------------------------------------------------------------- 355 (454)
T ss_dssp ECCSSCCS-CCCC-C-----------------------------------------------------------------
T ss_pred ECCCCccc-cccc-h-----------------------------------------------------------------
Confidence 99999887 3443 0
Q ss_pred cccccccccEEEccCCcccc--cCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc--cCCcCCCC
Q 005619 490 KGVILDYMAGLDLSSNKLTG--DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG--QIPPQLTE 565 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~l~~ 565 (688)
+++|+.|++++|++++ .+|..++.+ +.|.+.+.+|.. +++|+.||+++|++++ .+|.
T Consensus 356 ----l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~---- 416 (454)
T 1jl5_A 356 ----PQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE---- 416 (454)
T ss_dssp ----CTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC-------------------------------------
T ss_pred ----hhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh----
Confidence 4578889999999988 677665443 457777777764 5789999999999997 5554
Q ss_pred CCCCCEEecCCCcCccCCCC
Q 005619 566 LHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 566 l~~L~~L~ls~N~l~~~~p~ 585 (688)
+++.|.+.+|.+.+.+|.
T Consensus 417 --sl~~L~~~~~~~~~~~~~ 434 (454)
T 1jl5_A 417 --SVEDLRMNSERVVDPYEF 434 (454)
T ss_dssp --------------------
T ss_pred --hHhheeCcCcccCCcccc
Confidence 466778899999887764
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-38 Score=341.89 Aligned_cols=346 Identities=18% Similarity=0.166 Sum_probs=246.1
Q ss_pred CEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccC
Q 005619 191 RLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISN 270 (688)
Q Consensus 191 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 270 (688)
+.++.+++.++ .+|... .++++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 34555555554 444432 23566666666666655555666666666666666666665566666666666777766
Q ss_pred CcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCc
Q 005619 271 NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIP 349 (688)
Q Consensus 271 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~ 349 (688)
|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+ .+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 66665555556666777777777777666666666777777777777777766655555 66777777777777775555
Q ss_pred hhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhh
Q 005619 350 NTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429 (688)
Q Consensus 350 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 429 (688)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.......+|+.|++++|++++..+..+.+
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~--- 246 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH--- 246 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT---
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC---
Confidence 56777788888888888877776777778888888888888777666666666668888888888887332233322
Q ss_pred cccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccc
Q 005619 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG 509 (688)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 509 (688)
+++|+.|+|++|.+++
T Consensus 247 ----------------------------------------------------------------l~~L~~L~Ls~n~l~~ 262 (477)
T 2id5_A 247 ----------------------------------------------------------------LVYLRFLNLSYNPIST 262 (477)
T ss_dssp ----------------------------------------------------------------CTTCCEEECCSSCCCE
T ss_pred ----------------------------------------------------------------ccccCeeECCCCcCCc
Confidence 5678888888888888
Q ss_pred cCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCccc
Q 005619 510 DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589 (688)
Q Consensus 510 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 589 (688)
..+..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+....+
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp ECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred cChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 88888888999999999999999888889999999999999999999877778888999999999999999887643322
Q ss_pred CCcCccccCCCCCCCCCC
Q 005619 590 STFDESSYRGNLHLCGPP 607 (688)
Q Consensus 590 ~~~~~~~~~~n~~l~~~p 607 (688)
.......+.++...|..|
T Consensus 343 ~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 343 RRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTTTSSCCTTCCCBEEES
T ss_pred hhhhccccCccCceeCCc
Confidence 222334455566666544
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-37 Score=329.95 Aligned_cols=266 Identities=21% Similarity=0.168 Sum_probs=145.7
Q ss_pred CCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEE
Q 005619 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISL 144 (688)
Q Consensus 65 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L 144 (688)
++++++|++|++++|.++.+| .+..+++|++|++++|++++ +| +..+++|++|++++|.+++.+ ...+++|++|
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L 111 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYL 111 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCceee-cCCCCcCCEE
Confidence 344455555556666555554 35556666666666666653 33 345566666666666655543 3345555555
Q ss_pred EccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc
Q 005619 145 DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224 (688)
Q Consensus 145 ~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 224 (688)
++++|++++ ++ + ..+++|++|++++|.+++. + ++.+++|++|++++|...+.++ +..+++|+.|++++|.
T Consensus 112 ~L~~N~l~~-l~--~-~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 112 NCDTNKLTK-LD--V-SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNK 181 (457)
T ss_dssp ECCSSCCSC-CC--C-TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSC
T ss_pred ECCCCcCCe-ec--C-CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCc
Confidence 555555552 33 2 2466666666666666643 2 5566666666666664433442 3455666666666666
Q ss_pred CCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCccc
Q 005619 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQ 304 (688)
Q Consensus 225 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 304 (688)
+++. + +..+++|+.|++++|.+++. .+..+++|++|++++|++++ +| ++.+++|+.|++++|.+++..
T Consensus 182 l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~--- 249 (457)
T 3bz5_A 182 ITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD--- 249 (457)
T ss_dssp CCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---
T ss_pred ccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---
Confidence 6542 2 55556666666666666543 25555666666666666664 33 555566666666666665432
Q ss_pred ccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCc
Q 005619 305 FNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP 373 (688)
Q Consensus 305 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 373 (688)
+..+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|
T Consensus 250 ~~~l~~L~~L~l~~n-------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT-------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CTTCTTCCEEECTTC-------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEE
T ss_pred HHHCCCCCEEeccCC-------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceec
Confidence 234455555555543 23445555555444444 2344555555555555444444
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-36 Score=322.87 Aligned_cols=343 Identities=24% Similarity=0.325 Sum_probs=169.8
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccC
Q 005619 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSS 197 (688)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 197 (688)
+++.|++.++.+..++....+++|++|++++|.++ .++. + ..+++|++|++++|.+++..+ ++++++|++|++++
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~ 121 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFN 121 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cccEEecCCCCCccCcchhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCEEECCC
Confidence 34444444443333322223334444444444443 2222 2 245555555555555554322 55555555565555
Q ss_pred CcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCC
Q 005619 198 NKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277 (688)
Q Consensus 198 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 277 (688)
|.+.+ ++. +..+++|++|++++|.+.+. +.+..+++|++|+++ +.+.+.. .+..+++|++|++++|.+.+.
T Consensus 122 n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~~- 192 (466)
T 1o6v_A 122 NQITD-IDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSDI- 192 (466)
T ss_dssp SCCCC-CGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCCC-
T ss_pred CCCCC-ChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCCC-
Confidence 55542 222 44555555555555555432 234555555555554 2222221 244555555555555555432
Q ss_pred chhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCC
Q 005619 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSA 357 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~ 357 (688)
..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++
T Consensus 193 -~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-------------------------~~l~~l~~ 244 (466)
T 1o6v_A 193 -SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-------------------------GTLASLTN 244 (466)
T ss_dssp -GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-------------------------GGGGGCTT
T ss_pred -hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc-------------------------hhhhcCCC
Confidence 224455555555555555543332 34445555555555544432 12334445
Q ss_pred ccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 358 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
|+.|++++|.+.+..+ +..+++|+.|++++|.+++..+ +..+++|+.|++++|++++..| +.
T Consensus 245 L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~------------ 306 (466)
T 1o6v_A 245 LTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS------------ 306 (466)
T ss_dssp CSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG------------
T ss_pred CCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc------------
Confidence 5555555555543322 4455555555555555553322 4555555555555555543221 11
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
.+++|+.|++++|++++..| +..
T Consensus 307 -------------------------------------------------------~l~~L~~L~L~~n~l~~~~~--~~~ 329 (466)
T 1o6v_A 307 -------------------------------------------------------NLKNLTYLTLYFNNISDISP--VSS 329 (466)
T ss_dssp -------------------------------------------------------GCTTCSEEECCSSCCSCCGG--GGG
T ss_pred -------------------------------------------------------CCCCCCEEECcCCcCCCchh--hcc
Confidence 13455556666665554443 455
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
+++|+.|++++|++++. ..++++++|+.|++++|++++..| +..+++|++|++++|++++
T Consensus 330 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 330 LTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 66666666666666543 345566666666666666665554 5566666666666666655
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=322.31 Aligned_cols=342 Identities=24% Similarity=0.318 Sum_probs=251.1
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++++.|+++++.+.. +| .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 3455555665555553 23 2555666666666666655 2222 4556666666666666654333 6666666666
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.+.+..+ +..+++|++|++++|.+.+. + .+..+++|++|+++ |.+.+.. .+..+++|++|++++|.+.
T Consensus 118 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 118 TLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVS 190 (466)
T ss_dssp ECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCC
Confidence 666666664322 66667777777777776642 2 36677777777775 3444322 3777788888888888777
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+.. ....+++|++|++++|.+.+..+ +..+++|++|++++|++.+. ..+..+++|+.|++++|.+.+..+ +..
T Consensus 191 ~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~ 263 (466)
T 1o6v_A 191 DIS-VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG 263 (466)
T ss_dssp CCG-GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred CCh-hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence 643 23377888888888888875544 66789999999999999664 468899999999999999997655 889
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|+.|++++|.+++..| +.
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~--------------------------------------------------------- 284 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LA--------------------------------------------------------- 284 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GT---------------------------------------------------------
T ss_pred CCCCCEEECCCCccCcccc--cc---------------------------------------------------------
Confidence 9999999999999985433 21
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
.++.|+.|++++|++++..| +..+++|+.|+|++|++++..| ++.+++|+.|++++|++++. ..
T Consensus 285 ----------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 348 (466)
T 1o6v_A 285 ----------GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SS 348 (466)
T ss_dssp ----------TCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GG
T ss_pred ----------CCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hh
Confidence 15789999999999997654 8899999999999999998766 78999999999999999976 57
Q ss_pred CCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCC
Q 005619 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNL 601 (688)
Q Consensus 563 l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 601 (688)
+..+++|++|++++|++++..| ...+..+......+|+
T Consensus 349 l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 349 LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQA 386 (466)
T ss_dssp GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEE
T ss_pred hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCc
Confidence 8999999999999999999887 4455556666666664
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=322.30 Aligned_cols=322 Identities=20% Similarity=0.203 Sum_probs=195.0
Q ss_pred cccCchhhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcch
Q 005619 7 SGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN 86 (688)
Q Consensus 7 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~ 86 (688)
.+..+..++++++|++|++++|.+++ +| .+.++++|++|++++|.+.+. .+..+++|++|++++|.++.+|
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~--~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~L~~L~Ls~N~l~~~~- 101 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD--MT--GIEKLTGLTKLICTSNNITTL----DLSQNTNLTYLACDSNKLTNLD- 101 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC--CT--TGGGCTTCSEEECCSSCCSCC----CCTTCTTCSEEECCSSCCSCCC-
T ss_pred CcccccChhHcCCCCEEEccCCCccc--Ch--hhcccCCCCEEEccCCcCCeE----ccccCCCCCEEECcCCCCceee-
Confidence 34445567777888888888887775 34 477777777777777765442 1566667777777777776554
Q ss_pred hhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCC
Q 005619 87 FLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKL 166 (688)
Q Consensus 87 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L 166 (688)
+..+++|++|++++|++++ ++ +..+++|++|++++|++++.+ ...+++|++|++++|+..+.+
T Consensus 102 -~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~----------- 164 (457)
T 3bz5_A 102 -VTPLTKLTYLNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTEID-VSHNTQLTELDCHLNKKITKL----------- 164 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSC-CC---CTTCTTCCEEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCC-----------
T ss_pred -cCCCCcCCEEECCCCcCCe-ec---CCCCCcCCEEECCCCccceec-cccCCcCCEEECCCCCccccc-----------
Confidence 5666677777777776663 43 346666666666666666542 234444555555544333233
Q ss_pred CEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccC
Q 005619 167 DCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDN 246 (688)
Q Consensus 167 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 246 (688)
.++.+++|++|++++|.+++ +| +..+++|+.|++++|.+++. .+..+++|++|++++
T Consensus 165 ----------------~~~~l~~L~~L~ls~n~l~~-l~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~ 221 (457)
T 3bz5_A 165 ----------------DVTPQTQLTTLDCSFNKITE-LD---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSS 221 (457)
T ss_dssp ----------------CCTTCTTCCEEECCSSCCCC-CC---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCS
T ss_pred ----------------ccccCCcCCEEECCCCccce-ec---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcC
Confidence 24445555555555555542 33 34455555666665555543 255566666666666
Q ss_pred CcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccc
Q 005619 247 NHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI 326 (688)
Q Consensus 247 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 326 (688)
|++++ +| +..+++|+.|++++|.+++.. ++.+++|+.|+++.| +|+.|++++|.+.+..+
T Consensus 222 N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~ 281 (457)
T 3bz5_A 222 NKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ 281 (457)
T ss_dssp SCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE
T ss_pred Ccccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc
Confidence 66665 33 556666677777777666543 344566666666554 34556666666655444
Q ss_pred cccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCC
Q 005619 327 STLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406 (688)
Q Consensus 327 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 406 (688)
...+++|+.|++++|...+.+|. ..++|+.|++++| ++|+.|++++|++++. + ++.+++|
T Consensus 282 -~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L 341 (457)
T 3bz5_A 282 -AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKL 341 (457)
T ss_dssp -CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTC
T ss_pred -ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcC
Confidence 22567788888888776666653 3345665555544 5677777777777763 2 6667777
Q ss_pred CEEEccCCcCc
Q 005619 407 SIMDLSHNRLN 417 (688)
Q Consensus 407 ~~L~ls~n~l~ 417 (688)
+.|++++|+++
T Consensus 342 ~~L~l~~N~l~ 352 (457)
T 3bz5_A 342 KSLSCVNAHIQ 352 (457)
T ss_dssp SEEECCSSCCC
T ss_pred cEEECCCCCCC
Confidence 77777777665
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=321.23 Aligned_cols=320 Identities=18% Similarity=0.175 Sum_probs=154.3
Q ss_pred EEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEccc
Q 005619 143 SLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSN 222 (688)
Q Consensus 143 ~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 222 (688)
.++.++++++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++
T Consensus 15 ~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp EEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-EeChhhhhCCccCCEEECCC
Confidence 4444444444 444433 234555555555555544455555555555555555554 23223344455555555555
Q ss_pred CcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCc
Q 005619 223 NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP 302 (688)
Q Consensus 223 n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 302 (688)
|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 55544333344445555555555555544444444445555555555555444444444445555555555554444444
Q ss_pred ccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCc
Q 005619 303 VQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL 382 (688)
Q Consensus 303 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 382 (688)
..+..+++|+.|++++|.+.+..+. .+..+++|+.|++++|...+.++.......+|
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~-----------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDY-----------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTT-----------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred hHhcccCCCcEEeCCCCcCcEeChh-----------------------hcccCcccceeeCCCCccccccCcccccCccc
Confidence 4444444444444444444433332 23333333333333333333333333333344
Q ss_pred cEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceec
Q 005619 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQL 462 (688)
Q Consensus 383 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 462 (688)
+.|++++|++++..+..+..+++|+.|++++|++++..+..+.+
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------ 270 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE------------------------------------ 270 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT------------------------------------
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc------------------------------------
Confidence 44444444444333334444555555555555544322221111
Q ss_pred ccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCC
Q 005619 463 SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNL 542 (688)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 542 (688)
++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+
T Consensus 271 -------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 271 -------------------------------LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp -------------------------------CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred -------------------------------cccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 3345555555555555555556666666666666666665555555666
Q ss_pred CCCCeEeCCCCcccc
Q 005619 543 KMIESLDLSHNKLNG 557 (688)
Q Consensus 543 ~~L~~L~Ls~N~l~~ 557 (688)
++|+.|+|++|.+.+
T Consensus 320 ~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 320 GNLETLILDSNPLAC 334 (477)
T ss_dssp GGCCEEECCSSCEEC
T ss_pred cccCEEEccCCCccC
Confidence 666666666666554
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-35 Score=311.12 Aligned_cols=334 Identities=22% Similarity=0.214 Sum_probs=193.7
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++++.+++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 455555555555555433333455555555555555554 3333334445555555555555554444444455555555
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.++. ..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|+++
T Consensus 123 ~L~~n~l~~------------------------l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 123 VLERNDLSS------------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp ECCSSCCCC------------------------CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS
T ss_pred ECCCCccCc------------------------CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC
Confidence 555555443 33333344444444444444444444444444455555555555444
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+... ..+++|++|++++|.+++ +...++|+.|++++|.+... |. ...++|+.|++++|.+++. ..+..
T Consensus 179 ~~~~--~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 179 HVDL--SLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp BCCG--GGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred cccc--ccccccceeecccccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcC
Confidence 3321 134455555555555442 12234566666666666433 22 1235667777777766643 45666
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|++|++++|.+++..|..+..
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~-------------------------------------------------------- 270 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVK-------------------------------------------------------- 270 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTT--------------------------------------------------------
T ss_pred CCCccEEECCCCcCCCcChhHccc--------------------------------------------------------
Confidence 677777777777776555544432
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
++.|+.|++++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+++|+.|+|++|+++.. |
T Consensus 271 -----------l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~-- 334 (390)
T 3o6n_A 271 -----------MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K-- 334 (390)
T ss_dssp -----------CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--
T ss_pred -----------cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--
Confidence 4566777777777764 3445567888999999999888 5677788889999999999998855 3
Q ss_pred CCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCCCCCCC
Q 005619 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGP 606 (688)
Q Consensus 563 l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~ 606 (688)
+..+++|++|++++|++.|.+.. ..+..+....+.++...|..
T Consensus 335 ~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 335 LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 67788999999999999986532 34455555556666555553
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=326.00 Aligned_cols=333 Identities=22% Similarity=0.211 Sum_probs=201.1
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
+++.+++++|.+. .+|...+..+++|+.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 3444444444443 344433444444444444444444433344444444444444444444444444444455555555
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCC
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSI 348 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 348 (688)
++|.+++..+..|+.+++|++|++++|.+.+..|..|..+++|++|++++|.+++.... .+++|+.|++++|.+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~-- 206 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLST-- 206 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSE--
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccc--
Confidence 55555433333344555555555555555544444455555555555555555443211 34555555555555542
Q ss_pred chhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhh
Q 005619 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLL 428 (688)
Q Consensus 349 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~ 428 (688)
+...++|+.|++++|.+....+ .+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..
T Consensus 207 ---l~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-- 276 (597)
T 3oja_B 207 ---LAIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK-- 276 (597)
T ss_dssp ---EECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT--
T ss_pred ---ccCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC--
Confidence 2223456666666666643322 11 2467777777777764 355677777777777777777666655432
Q ss_pred hcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccc
Q 005619 429 FWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT 508 (688)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~ 508 (688)
+++|+.|+|++|.++
T Consensus 277 -----------------------------------------------------------------l~~L~~L~Ls~N~l~ 291 (597)
T 3oja_B 277 -----------------------------------------------------------------MQRLERLYISNNRLV 291 (597)
T ss_dssp -----------------------------------------------------------------CSSCCEEECTTSCCC
T ss_pred -----------------------------------------------------------------ccCCCEEECCCCCCC
Confidence 456777777777777
Q ss_pred ccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcc
Q 005619 509 GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQ 588 (688)
Q Consensus 509 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 588 (688)
+ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++.. +..+++|++|++++|+++|.++. .+
T Consensus 292 ~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~-~~ 365 (597)
T 3oja_B 292 A-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLR-AL 365 (597)
T ss_dssp E-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHH-HH
T ss_pred C-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHH-HH
Confidence 5 3556677889999999999998 67778888999999999999998653 66788999999999999987643 45
Q ss_pred cCCcCccccCCCCCCCCCC
Q 005619 589 FSTFDESSYRGNLHLCGPP 607 (688)
Q Consensus 589 ~~~~~~~~~~~n~~l~~~p 607 (688)
+..+....+.++...|+.+
T Consensus 366 ~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 366 FRNVARPAVDDADQHCKID 384 (597)
T ss_dssp TTTCCTTTBCCCCCCCCTT
T ss_pred HHHHhhhccccccccCCcc
Confidence 6667777788888888864
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-35 Score=296.95 Aligned_cols=257 Identities=33% Similarity=0.546 Sum_probs=208.2
Q ss_pred CCcEEEccccccCC--CCcccccCCCCCcEEEccC-CcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEE
Q 005619 286 NLYILSMSKNLLEG--NIPVQFNNLAILQILDISE-NNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETL 361 (688)
Q Consensus 286 ~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 361 (688)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+..+..+ .+++|++|++++|.+++.+|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444444 4444555555555555552 44444444433 55566666666666666777778888888888
Q ss_pred eCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCC-CCCEEEccCCcCccccchhhhhhhhcccCCcccccc
Q 005619 362 DLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLR-KLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGF 440 (688)
Q Consensus 362 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~ 440 (688)
++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~-------------- 196 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN-------------- 196 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--------------
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--------------
Confidence 8888888888888889999999999999999888898899887 9999999999999888876643
Q ss_pred eeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCC
Q 005619 441 VMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN 520 (688)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~ 520 (688)
+. |+.|++++|.+++..|..|..+++
T Consensus 197 -----------------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~ 222 (313)
T 1ogq_A 197 -----------------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKN 222 (313)
T ss_dssp -----------------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred -----------------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCC
Confidence 23 888999999999999999999999
Q ss_pred CCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCC
Q 005619 521 IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGN 600 (688)
Q Consensus 521 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n 600 (688)
|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|....+..+....+.+|
T Consensus 223 L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 223 TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred CCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCC
Confidence 99999999999977766 88999999999999999999999999999999999999999999999888889999999999
Q ss_pred CCCCCCCCCCCC
Q 005619 601 LHLCGPPINKSC 612 (688)
Q Consensus 601 ~~l~~~p~~~~C 612 (688)
+.+||.|.. .|
T Consensus 302 ~~lc~~p~~-~C 312 (313)
T 1ogq_A 302 KCLCGSPLP-AC 312 (313)
T ss_dssp SEEESTTSS-CC
T ss_pred CCccCCCCC-CC
Confidence 999998875 46
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=288.59 Aligned_cols=304 Identities=20% Similarity=0.316 Sum_probs=182.6
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.++.. +.
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~---------- 105 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SA---------- 105 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GG----------
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hH----------
Confidence 4555555555555542 22 2445555555555555544 2222 34444555555555544431 23
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
+..+++|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.
T Consensus 106 --------------~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~ 168 (347)
T 4fmz_A 106 --------------LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168 (347)
T ss_dssp --------------GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC
T ss_pred --------------HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC
Confidence 4444555555555555443222 4455555555555553332222 2555555555555555555
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+..+ ...+++|++|++++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..
T Consensus 169 ~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~ 241 (347)
T 4fmz_A 169 DVTP-IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LAN 241 (347)
T ss_dssp CCGG-GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTT
T ss_pred Cchh-hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhc
Confidence 4433 2255566666666666653 222 5566777777777777755433 6677777777777777775433 677
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|++|++++|.+++. + .+
T Consensus 242 l~~L~~L~l~~n~l~~~-~-~~---------------------------------------------------------- 261 (347)
T 4fmz_A 242 LSQLTWLEIGTNQISDI-N-AV---------------------------------------------------------- 261 (347)
T ss_dssp CTTCCEEECCSSCCCCC-G-GG----------------------------------------------------------
T ss_pred CCCCCEEECCCCccCCC-h-hH----------------------------------------------------------
Confidence 77888888888777631 1 11
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..|..++++++|+.|++++|++++..|
T Consensus 262 ---------~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 262 ---------KDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp ---------TTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred ---------hcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 1156677888888887754 457788888888888888888888888888888888888888887665
Q ss_pred CCCCCCCCEEecCCCcCc
Q 005619 563 LTELHSLSKFDVSYNDLS 580 (688)
Q Consensus 563 l~~l~~L~~L~ls~N~l~ 580 (688)
+..+++|++|++++|+++
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 778888888888888765
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-34 Score=297.83 Aligned_cols=335 Identities=20% Similarity=0.214 Sum_probs=255.1
Q ss_pred CCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCC
Q 005619 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLE 216 (688)
Q Consensus 137 ~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 216 (688)
.+.+++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCC
Confidence 5688999999999998 889888778999999999999999888889999999999999999998 56666678999999
Q ss_pred EEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc
Q 005619 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296 (688)
Q Consensus 217 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 296 (688)
+|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999976666678899999999999998877777788888888888888887743 24456667777776665
Q ss_pred cCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhh
Q 005619 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQI 376 (688)
Q Consensus 297 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 376 (688)
+.+ +...++|++|++++|.+... |.. ..++|+.|++++|.+++. ..+
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~------------------------~~~--~~~~L~~L~l~~n~l~~~--~~l 244 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVV------------------------RGP--VNVELTILKLQHNNLTDT--AWL 244 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEE------------------------ECC--CCSSCCEEECCSSCCCCC--GGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeec------------------------ccc--ccccccEEECCCCCCccc--HHH
Confidence 542 12223455555555544332 221 135678888888887653 467
Q ss_pred hcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccccccccc
Q 005619 377 NEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYY 456 (688)
Q Consensus 377 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (688)
..+++|++|++++|.+++..|..+..+++|+.|++++|++++ +|..+
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~-------------------------------- 291 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYG-------------------------------- 291 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSS--------------------------------
T ss_pred cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCccc--------------------------------
Confidence 888888888888888887778888888899999999888863 22211
Q ss_pred ccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCC
Q 005619 457 NSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP 536 (688)
Q Consensus 457 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 536 (688)
..+++|+.|++++|+++ .+|..+..+++|+.|+|++|++++. |
T Consensus 292 -----------------------------------~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~ 334 (390)
T 3o6n_A 292 -----------------------------------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K 334 (390)
T ss_dssp -----------------------------------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C
T ss_pred -----------------------------------CCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C
Confidence 11577889999999988 5677788999999999999999854 3
Q ss_pred ccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCC
Q 005619 537 ESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583 (688)
Q Consensus 537 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 583 (688)
++.+++|+.|++++|++++.....+ +..+....+..+...|..
T Consensus 335 --~~~~~~L~~L~l~~N~~~~~~~~~~--~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 335 --LSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKI 377 (390)
T ss_dssp --CCTTCCCSEEECCSSCEEHHHHHHH--TTTCCTTTBCCCCSCCCT
T ss_pred --chhhccCCEEEcCCCCccchhHHHH--HHHHHhhcccccCceecc
Confidence 6788999999999999986432221 223333334555555544
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-32 Score=282.58 Aligned_cols=305 Identities=23% Similarity=0.317 Sum_probs=164.3
Q ss_pred CCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEc
Q 005619 67 PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDI 146 (688)
Q Consensus 67 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l 146 (688)
.+++|++|+++++.+..+|. +..+++|++|++++|+++ .++. +..+++|++|++++|.+++.+....+++|++|++
T Consensus 42 ~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l 117 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDISALQNLTNLRELYL 117 (347)
T ss_dssp HHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEC
T ss_pred hcccccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCchHHcCCCcCCEEEC
Confidence 34555666666666655553 555666666666666665 3333 3456666666666665555433334444555555
Q ss_pred cCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC
Q 005619 147 SSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226 (688)
Q Consensus 147 s~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 226 (688)
++|.++ .++. +..+++|++|++++|...... ..+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.
T Consensus 118 ~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~-~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 118 NEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKD-VTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp TTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCC-CGG--GGGCTTCSEEECTTSCCC
T ss_pred cCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCC-chh--hccCCCCCEEEccCCccc
Confidence 554444 2322 224555555555555333222 224455555555555554442 111 334444444444444443
Q ss_pred CcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCccccc
Q 005619 227 GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFN 306 (688)
Q Consensus 227 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 306 (688)
+ ..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +.
T Consensus 191 ~------------------------~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~ 240 (347)
T 4fmz_A 191 D------------------------ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LA 240 (347)
T ss_dssp C------------------------CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GT
T ss_pred c------------------------ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hh
Confidence 2 211 3344444555555544443322 4445555555555555543222 45
Q ss_pred CCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEe
Q 005619 307 NLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 307 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 386 (688)
.+++|++|++++|.+++. +....+++|++|++++|.+++. +.+..+++|+.|++++|++.+..+..+..+++|+.|+
T Consensus 241 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 317 (347)
T 4fmz_A 241 NLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317 (347)
T ss_dssp TCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEE
T ss_pred cCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEE
Confidence 555555555555555543 2222555666666666666532 3466677788888888877777777777788888888
Q ss_pred ccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
+++|++++..| +..+++|+.|++++|+++
T Consensus 318 L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 318 LSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred ccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888776555 677788888888888764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=304.29 Aligned_cols=312 Identities=20% Similarity=0.212 Sum_probs=208.7
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++++.+++++|.+....+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+++..+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 344455555555444433334444555555555555554 3333334455555555555555555444455555555556
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.+++..+..+..+++|++|++++|.+++..|..++.+++|++|++++|.+++.. +..+++|+.|++++|.++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~ 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLS 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCS
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccc
Confidence 66555555444444555666666666666666555555666666666666666665432 344566677777776665
Q ss_pred cccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcC
Q 005619 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQ 402 (688)
Q Consensus 323 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 402 (688)
+.. ..++|+.|++++|.+.. ++..+ .++|+.|++++|.+++ +..+..+++|+.|++++|.+.+..|..+..
T Consensus 206 ~l~----~~~~L~~L~ls~n~l~~-~~~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 206 TLA----IPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp EEE----CCTTCSEEECCSSCCCE-EECSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc----CCchhheeeccCCcccc-ccccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 432 24567777777777763 33222 2578999999998876 367888999999999999999888999999
Q ss_pred CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeee
Q 005619 403 LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMT 482 (688)
Q Consensus 403 l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 482 (688)
+++|+.|++++|.+++ +|..+
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~---------------------------------------------------------- 297 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYG---------------------------------------------------------- 297 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSS----------------------------------------------------------
T ss_pred ccCCCEEECCCCCCCC-CCccc----------------------------------------------------------
Confidence 9999999999999874 23211
Q ss_pred ccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccC
Q 005619 483 KNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 483 ~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 559 (688)
..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++. | ++.+++|+.|++++|.+++..
T Consensus 298 ---------~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 298 ---------QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp ---------SCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred ---------ccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence 11578999999999998 6788889999999999999999865 3 677889999999999998653
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=319.10 Aligned_cols=356 Identities=19% Similarity=0.201 Sum_probs=214.2
Q ss_pred CCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcc----cchhhhcCCCCCEEEccCCcCccccCchhhcCCC-
Q 005619 139 HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCF- 213 (688)
Q Consensus 139 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~- 213 (688)
++|++|++++|+++......++..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+...+..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 46778888888877444444455788899999998888743 4566777888999999988887544444444555
Q ss_pred ---CCCEEEcccCcCCC----cCcccccCCCCCCEEeccCCcCCCcccccc-----cCCCCCCEEEccCCcCCCCC----
Q 005619 214 ---SLEWLQLSNNNFDG----QIFPNYVNLTRLLFLYLDNNHFSGKIKDGL-----LRSSELMVLDISNNHLSGHI---- 277 (688)
Q Consensus 214 ---~L~~L~L~~n~i~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~---- 277 (688)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+ ...++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 68888888888774 346667778888888888887764433322 22456788888877776533
Q ss_pred chhhhCCcCCcEEEccccccCCCCccccc-----CCCCCcEEEccCCcCcccc----cccc-ccCccceEeeecCccccC
Q 005619 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFN-----NLAILQILDISENNLSGSM----ISTL-NLSSVEHLYLQSNALGGS 347 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~Ls~n~l~~~~----~~~~-~~~~L~~L~L~~n~l~~~ 347 (688)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++.. +..+ .+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44455567777777777776543333332 2446777777777666532 2222 456666666666665532
Q ss_pred C-----chhccCCCCccEEeCcCCcCCCc----CchhhhcCCCccEEeccCCcCCCCCchhhcC-----CCCCCEEEccC
Q 005619 348 I-----PNTIFRGSALETLDLRDNYFFGR----IPHQINEHSNLRALLLRGNYLQGPIPHQLCQ-----LRKLSIMDLSH 413 (688)
Q Consensus 348 ~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~ls~ 413 (688)
. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|+.|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 11122356666666666666443 3445555666666666666665433333322 24666666666
Q ss_pred CcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccc
Q 005619 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493 (688)
Q Consensus 414 n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (688)
|.+++.....+...- ..
T Consensus 323 n~l~~~~~~~l~~~l---------------------------------------------------------------~~ 339 (461)
T 1z7x_W 323 CSFTAACCSHFSSVL---------------------------------------------------------------AQ 339 (461)
T ss_dssp SCCBGGGHHHHHHHH---------------------------------------------------------------HH
T ss_pred CCCchHHHHHHHHHH---------------------------------------------------------------hh
Confidence 666543222221100 01
Q ss_pred cccccEEEccCCcccccCChhhhc-----cCCCCeeeCCCCcCcc----CCCccccCCCCCCeEeCCCCcccc
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICD-----LQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
++.|+.||+++|.+++..+..+.. .++|+.|+|++|.+++ .+|..+..+++|++|||++|++++
T Consensus 340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 345666666666666554444432 4566666666666664 455556666666666666666654
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-33 Score=284.97 Aligned_cols=251 Identities=29% Similarity=0.428 Sum_probs=202.6
Q ss_pred CCCCEEEccCCcCCC--CCchhhhCCcCCcEEEccc-cccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccce
Q 005619 261 SELMVLDISNNHLSG--HIPSWMGNFSNLYILSMSK-NLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEH 336 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~ 336 (688)
.+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+++..+..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 456777777777776 6677777777777777774 77777777777777777777777777776666555 7777888
Q ss_pred EeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCC-CccEEeccCCcCCCCCchhhcCCCCCCEEEccCCc
Q 005619 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHS-NLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNR 415 (688)
Q Consensus 337 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 415 (688)
|++++|.+++.+|..+..+++|++|++++|++++.+|..+..++ +|+.|++++|++++.+|..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 88888888777888888888888888888888778888888887 888888888888888888888886 8888888888
Q ss_pred CccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccc
Q 005619 416 LNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILD 495 (688)
Q Consensus 416 l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 495 (688)
+++..|..+.. ++
T Consensus 209 l~~~~~~~~~~-------------------------------------------------------------------l~ 221 (313)
T 1ogq_A 209 LEGDASVLFGS-------------------------------------------------------------------DK 221 (313)
T ss_dssp EEECCGGGCCT-------------------------------------------------------------------TS
T ss_pred ccCcCCHHHhc-------------------------------------------------------------------CC
Confidence 88766654432 56
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecC
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVS 575 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls 575 (688)
+|+.|++++|.+++.+|. +..+++|++|+|++|++++.+|..++.+++|+.|+|++|+++|.+|.. ..+++|+.++++
T Consensus 222 ~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~ 299 (313)
T 1ogq_A 222 NTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYA 299 (313)
T ss_dssp CCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTC
T ss_pred CCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhc
Confidence 788888888888876665 788899999999999999899999999999999999999999988886 888999999999
Q ss_pred CCcCcc
Q 005619 576 YNDLSG 581 (688)
Q Consensus 576 ~N~l~~ 581 (688)
+|+.-|
T Consensus 300 ~N~~lc 305 (313)
T 1ogq_A 300 NNKCLC 305 (313)
T ss_dssp SSSEEE
T ss_pred CCCCcc
Confidence 998433
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.98 E-value=2.9e-34 Score=309.21 Aligned_cols=388 Identities=19% Similarity=0.089 Sum_probs=233.3
Q ss_pred CCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCCEE
Q 005619 18 TSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYL 97 (688)
Q Consensus 18 ~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L 97 (688)
++|++|||++|.++... ....+..+++|++|++++|.+..... ..++..+..+++|++|
T Consensus 3 ~~l~~L~Ls~~~l~~~~-~~~~~~~~~~L~~L~L~~~~l~~~~~--------------------~~l~~~l~~~~~L~~L 61 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDAR-WAELLPLLQQCQVVRLDDCGLTEARC--------------------KDISSALRVNPALAEL 61 (461)
T ss_dssp EEEEEEEEESCCCCHHH-HHHHHHHHTTCSEEEEESSCCCHHHH--------------------HHHHHHHHTCTTCCEE
T ss_pred ccceehhhhhcccCchh-HHHHHhhcCCccEEEccCCCCCHHHH--------------------HHHHHHHHhCCCcCEE
Confidence 56788888888876522 11236677777777777776432110 0123334444444444
Q ss_pred ECCCCcCCCCCchHHhhCCC----CCcEEEccCCCCCCCC------CCCCCCCcCEEEccCCCCCCCCChhhhh----cC
Q 005619 98 DLSHNKLAGNFPTWLLENNT----KLEVLYLTNNSFSGFQ------LTSAQHGLISLDISSNNFTGKLPQNMGI----VL 163 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~----~L~~L~L~~n~l~~~~------~~~~~~~L~~L~ls~n~~~~~~~~~~~~----~l 163 (688)
++++|.+++..+..++..++ +|++|++++|.+++.. ....+++|++|++++|.+++..+..+.. ..
T Consensus 62 ~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~ 141 (461)
T 1z7x_W 62 NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141 (461)
T ss_dssp ECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred eCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCC
Confidence 44444443222222222333 3444444444444211 1123445555555555544322222221 24
Q ss_pred CCCCEEEccCCCCCccc----chhhhcCCCCCEEEccCCcCccccCchhh----cCCCCCCEEEcccCcCCCc----Ccc
Q 005619 164 PKLDCMNISKNSFEGNI----PSSIGKMQGLRLLDVSSNKFAGELSQSPV----TNCFSLEWLQLSNNNFDGQ----IFP 231 (688)
Q Consensus 164 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~i~~~----~~~ 231 (688)
++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+.... ...++|++|++++|.++.. ++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 45777777777666532 44555667777777777776532222211 1345777777777777653 345
Q ss_pred cccCCCCCCEEeccCCcCCCcc-----cccccCCCCCCEEEccCCcCCCC----CchhhhCCcCCcEEEccccccCCCCc
Q 005619 232 NYVNLTRLLFLYLDNNHFSGKI-----KDGLLRSSELMVLDISNNHLSGH----IPSWMGNFSNLYILSMSKNLLEGNIP 302 (688)
Q Consensus 232 ~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~ 302 (688)
.+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..+
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 301 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHH
Confidence 5566777888888877766432 22223567888888888877753 45566667888888888887764433
Q ss_pred ccccC-----CCCCcEEEccCCcCccccc----ccc-ccCccceEeeecCccccCCchhccC-----CCCccEEeCcCCc
Q 005619 303 VQFNN-----LAILQILDISENNLSGSMI----STL-NLSSVEHLYLQSNALGGSIPNTIFR-----GSALETLDLRDNY 367 (688)
Q Consensus 303 ~~l~~-----l~~L~~L~Ls~n~l~~~~~----~~~-~~~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~l~~n~ 367 (688)
..+.. .++|++|++++|.+++... ..+ .+++|++|++++|.+++..+..+.. .++|++|++++|+
T Consensus 302 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 33332 2588888888888876532 222 5688888888888887655544432 5789999999999
Q ss_pred CCC----cCchhhhcCCCccEEeccCCcCCCCCchhhc-----CCCCCCEEEccCCcCccccchhhhh
Q 005619 368 FFG----RIPHQINEHSNLRALLLRGNYLQGPIPHQLC-----QLRKLSIMDLSHNRLNGSIPACITN 426 (688)
Q Consensus 368 l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~ls~n~l~~~~p~~l~~ 426 (688)
+++ .+|..+..+++|++|++++|++++.....+. ...+|+.|++.++.+....+..+..
T Consensus 382 i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~ 449 (461)
T 1z7x_W 382 VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449 (461)
T ss_dssp CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHH
Confidence 875 6778888899999999999998754322222 2457899999888887655554443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-31 Score=271.36 Aligned_cols=287 Identities=22% Similarity=0.263 Sum_probs=170.7
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
+++.++++++.+. .+|... .++++.|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCCCcc-ccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 5777888877776 666543 356777777777777666667777777777777777777666777777777777777
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcc--cccccc-ccCccceEeeecCccc
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG--SMISTL-NLSSVEHLYLQSNALG 345 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~~-~~~~L~~L~L~~n~l~ 345 (688)
++|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+ .+ +|++|++++|.++
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 777776 3343333 677777777777776656667777777777777776643 233333 22 5555555555554
Q ss_pred cCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhh
Q 005619 346 GSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACIT 425 (688)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~ 425 (688)
+ +|..+. ++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+.
T Consensus 186 ~-l~~~~~--------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~ 238 (332)
T 2ft3_A 186 G-IPKDLP--------------------------ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLS 238 (332)
T ss_dssp S-CCSSSC--------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGG
T ss_pred c-cCcccc--------------------------CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhh
Confidence 2 333222 3444555555555444444455555555555555555433332222
Q ss_pred hhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCC
Q 005619 426 NLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSN 505 (688)
Q Consensus 426 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N 505 (688)
. +++|+.|++++|
T Consensus 239 ~-------------------------------------------------------------------l~~L~~L~L~~N 251 (332)
T 2ft3_A 239 F-------------------------------------------------------------------LPTLRELHLDNN 251 (332)
T ss_dssp G-------------------------------------------------------------------CTTCCEEECCSS
T ss_pred C-------------------------------------------------------------------CCCCCEEECCCC
Confidence 1 334555555555
Q ss_pred cccccCChhhhccCCCCeeeCCCCcCccCCCccccCC------CCCCeEeCCCCccc--ccCCcCCCCCCCCCEEecCCC
Q 005619 506 KLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNL------KMIESLDLSHNKLN--GQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 506 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~Ls~N~l~--~~~p~~l~~l~~L~~L~ls~N 577 (688)
+++ .+|..+..+++|+.|++++|++++..+..|... ..|+.|++++|.+. +..|..|..+++|+.+++++|
T Consensus 252 ~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp CCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 555 445556666666666666666665555555432 45666777777666 455566666777777777666
Q ss_pred c
Q 005619 578 D 578 (688)
Q Consensus 578 ~ 578 (688)
+
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.1e-31 Score=269.81 Aligned_cols=259 Identities=26% Similarity=0.305 Sum_probs=217.9
Q ss_pred CCChhhhhcCC-----CCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCc
Q 005619 154 KLPQNMGIVLP-----KLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQ 228 (688)
Q Consensus 154 ~~~~~~~~~l~-----~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 228 (688)
.+|..+...+| +++.++++++.++ .+|..+ .+++++|++++|.+. .++...+..+++|++|++++|.+++.
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 93 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKI 93 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCcc
Confidence 45555443333 7999999999988 566655 368999999999998 66666678999999999999999988
Q ss_pred CcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCC--CCccccc
Q 005619 229 IFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG--NIPVQFN 306 (688)
Q Consensus 229 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~ 306 (688)
.+..+..+++|++|++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+.
T Consensus 94 ~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 170 (332)
T 2ft3_A 94 HEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170 (332)
T ss_dssp CGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSC
T ss_pred CHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccccc
Confidence 8899999999999999999998 4555443 799999999999998877889999999999999999963 6777888
Q ss_pred CCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEe
Q 005619 307 NLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 307 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 386 (688)
.+ +|++|++++|.+++.+... .++|++|++++|.+++..+..+..+++|++|++++|++.+..+..+..+++|+.|+
T Consensus 171 ~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 171 GL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247 (332)
T ss_dssp SC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEE
T ss_pred CC-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEE
Confidence 88 9999999999999865543 37999999999999977778899999999999999999888888899999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchh
Q 005619 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPAC 423 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 423 (688)
+++|+++ .+|..+..+++|+.|++++|++++..+..
T Consensus 248 L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~ 283 (332)
T 2ft3_A 248 LDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVND 283 (332)
T ss_dssp CCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTS
T ss_pred CCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhH
Confidence 9999998 67888899999999999999998544443
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-30 Score=267.47 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=37.8
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccC------CCCCCeEeCCCCcccc--cCCcCCCCCC
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSN------LKMIESLDLSHNKLNG--QIPPQLTELH 567 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~L~Ls~N~l~~--~~p~~l~~l~ 567 (688)
+|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+..|.. .+.|+.|++++|.+.. ..|..|..++
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 3444444444444 34444445555555555555555444444432 2445555555555542 3344555555
Q ss_pred CCCEEecCCC
Q 005619 568 SLSKFDVSYN 577 (688)
Q Consensus 568 ~L~~L~ls~N 577 (688)
.++.+++++|
T Consensus 320 ~l~~l~L~~N 329 (330)
T 1xku_A 320 VRAAVQLGNY 329 (330)
T ss_dssp CGGGEEC---
T ss_pred ceeEEEeccc
Confidence 5555555555
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=262.41 Aligned_cols=268 Identities=18% Similarity=0.202 Sum_probs=194.9
Q ss_pred CCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEE
Q 005619 139 HGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWL 218 (688)
Q Consensus 139 ~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 218 (688)
+.+++|++++|+++ .++...+..+++|++|++++|.+++..|..|+.+++|++|++++|.++ .+|...+ ++|++|
T Consensus 52 ~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L 126 (330)
T 1xku_A 52 PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQEL 126 (330)
T ss_dssp TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEE
T ss_pred CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEE
Confidence 34555555555555 344333346777777777777777766777777778888888877776 5665443 577888
Q ss_pred EcccCcCCCcCcccccCCCCCCEEeccCCcCCC--cccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc
Q 005619 219 QLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSG--KIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296 (688)
Q Consensus 219 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 296 (688)
++++|.+++..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++. +|..+. ++|++|++++|.
T Consensus 127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~ 203 (330)
T 1xku_A 127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNK 203 (330)
T ss_dssp ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSC
T ss_pred ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCc
Confidence 888887777666667778888888888887753 556667777888888888887774 444332 678888888888
Q ss_pred cCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchh
Q 005619 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQ 375 (688)
Q Consensus 297 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 375 (688)
+++..+..+..+++|++|++++|.+++..+..+ .+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..
T Consensus 204 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~ 282 (330)
T 1xku_A 204 ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSND 282 (330)
T ss_dssp CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTS
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhh
Confidence 887777788888888888888888887766555 7788888888888887 77777888888888888888887766665
Q ss_pred hhc------CCCccEEeccCCcCCC--CCchhhcCCCCCCEEEccCCc
Q 005619 376 INE------HSNLRALLLRGNYLQG--PIPHQLCQLRKLSIMDLSHNR 415 (688)
Q Consensus 376 ~~~------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~ 415 (688)
|.. .+.++.+++++|++.. ..|..|..+.+++.+++++|+
T Consensus 283 f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 543 3678889999998863 556778888899999998874
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-30 Score=259.96 Aligned_cols=250 Identities=22% Similarity=0.235 Sum_probs=192.2
Q ss_pred EEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccc---ccccccCccceEeeec
Q 005619 265 VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSM---ISTLNLSSVEHLYLQS 341 (688)
Q Consensus 265 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~L~~L~L~~ 341 (688)
.++.+++.++ .+|..+. ++|++|++++|.++...+..|..+++|++|++++|.++... .....+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4455555444 2333221 45566666666665444444566666666666666665432 2222566777777777
Q ss_pred CccccCCchhccCCCCccEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcc-c
Q 005619 342 NALGGSIPNTIFRGSALETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG-S 419 (688)
Q Consensus 342 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~-~ 419 (688)
|.++ .+|..+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 7776 466667778888888888888876554 578888999999999999988888889999999999999999875 3
Q ss_pred cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccE
Q 005619 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499 (688)
Q Consensus 420 ~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 499 (688)
.|..+.. +++|+.
T Consensus 167 ~~~~~~~-------------------------------------------------------------------l~~L~~ 179 (306)
T 2z66_A 167 LPDIFTE-------------------------------------------------------------------LRNLTF 179 (306)
T ss_dssp ECSCCTT-------------------------------------------------------------------CTTCCE
T ss_pred chhHHhh-------------------------------------------------------------------CcCCCE
Confidence 4443321 578999
Q ss_pred EEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC-CCCEEecCCCc
Q 005619 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH-SLSKFDVSYND 578 (688)
Q Consensus 500 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~-~L~~L~ls~N~ 578 (688)
|++++|++++..|..|..+++|+.|+|++|++++..+..++.+++|+.|||++|++++..|..+..++ +|++|++++|+
T Consensus 180 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 180 LDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred EECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 99999999998899999999999999999999988888899999999999999999999999999995 99999999999
Q ss_pred CccCCCC
Q 005619 579 LSGPIPD 585 (688)
Q Consensus 579 l~~~~p~ 585 (688)
++|.|+.
T Consensus 260 ~~~~c~~ 266 (306)
T 2z66_A 260 FACTCEH 266 (306)
T ss_dssp EECSGGG
T ss_pred eecccCh
Confidence 9998764
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-31 Score=295.81 Aligned_cols=392 Identities=14% Similarity=0.077 Sum_probs=186.7
Q ss_pred CCCCCcEEEccCCCCCCCCCCC---CCCC-cCEEEccCCC-CCCCCChhhhhcCCCCCEEEccCCCCCcc----cchhhh
Q 005619 115 NNTKLEVLYLTNNSFSGFQLTS---AQHG-LISLDISSNN-FTGKLPQNMGIVLPKLDCMNISKNSFEGN----IPSSIG 185 (688)
Q Consensus 115 ~l~~L~~L~L~~n~l~~~~~~~---~~~~-L~~L~ls~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~ 185 (688)
.+++|++|++++|.+++..... .+++ |++|++++|. ++......+...+++|++|++++|.+++. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555555555555444321110 1222 5555555544 11011111222455666666666555443 222334
Q ss_pred cCCCCCEEEccCCcCcccc---CchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCC---CcccccccC
Q 005619 186 KMQGLRLLDVSSNKFAGEL---SQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS---GKIKDGLLR 259 (688)
Q Consensus 186 ~l~~L~~L~L~~n~l~~~~---~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~ 259 (688)
.+++|++|++++|.+.+.- -...+..+++|+.|++++|.+.+ .+..+..+++|++|+++..... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 5556666666655554110 01122345556666666555543 3344555556666665532211 122233445
Q ss_pred CCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCc-ccccCCCCCcEEEccCCcCcccccccc--ccCccce
Q 005619 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP-VQFNNLAILQILDISENNLSGSMISTL--NLSSVEH 336 (688)
Q Consensus 260 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~--~~~~L~~ 336 (688)
+++|+.|+++++.. ..+|..+..+++|++|++++|.+.+... ..+..+++|++|+++ +.+.+.....+ .+++|++
T Consensus 269 ~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 269 PRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCE
T ss_pred cccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCE
Confidence 55666666655422 2445555556666666666665443222 224556666666666 33322221111 4556666
Q ss_pred Eeeec-----------CccccCC-chhccCCCCccEEeCcCCcCCCcCchhhhc-CCCccEEecc----CCcCCCC----
Q 005619 337 LYLQS-----------NALGGSI-PNTIFRGSALETLDLRDNYFFGRIPHQINE-HSNLRALLLR----GNYLQGP---- 395 (688)
Q Consensus 337 L~L~~-----------n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~---- 395 (688)
|++++ +.+++.. +.....+++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence 66662 3333221 112233566666666666665554444443 6666666664 4455432
Q ss_pred -CchhhcCCCCCCEEEccCCc--CccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCC
Q 005619 396 -IPHQLCQLRKLSIMDLSHNR--LNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSL 472 (688)
Q Consensus 396 -~~~~~~~l~~L~~L~ls~n~--l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 472 (688)
++..+.++++|+.|++++|. +++..+..+..
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~---------------------------------------------- 460 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQ---------------------------------------------- 460 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHH----------------------------------------------
Confidence 22334456666666665433 33322222211
Q ss_pred CcceEEEeeeccccccccccccccccEEEccCCccccc-CChhhhccCCCCeeeCCCCcCccC-CCccccCCCCCCeEeC
Q 005619 473 GTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD-IPSEICDLQNIHGLNLSHNFLSGS-IPESFSNLKMIESLDL 550 (688)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~L 550 (688)
.+++|+.|++++|++++. ++..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|
T Consensus 461 --------------------~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 461 --------------------YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp --------------------SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEE
T ss_pred --------------------hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeEC
Confidence 134566666666666542 233445566666666666666543 2333345666666666
Q ss_pred CCCcccccCCcCC-CCCCCCCEEecC
Q 005619 551 SHNKLNGQIPPQL-TELHSLSKFDVS 575 (688)
Q Consensus 551 s~N~l~~~~p~~l-~~l~~L~~L~ls 575 (688)
++|++++.-...+ ..++.+....+.
T Consensus 521 s~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 521 QGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp ESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred cCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 6666654322222 234444444333
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-31 Score=293.47 Aligned_cols=396 Identities=14% Similarity=0.046 Sum_probs=264.5
Q ss_pred hCCCCCCEEECCCCcCCCCCchHHhhCCCC-CcEEEccCCC-CCCCCC---CCCCCCcCEEEccCCCCCCCCCh---hhh
Q 005619 89 LHQFNLKYLDLSHNKLAGNFPTWLLENNTK-LEVLYLTNNS-FSGFQL---TSAQHGLISLDISSNNFTGKLPQ---NMG 160 (688)
Q Consensus 89 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~-L~~L~L~~n~-l~~~~~---~~~~~~L~~L~ls~n~~~~~~~~---~~~ 160 (688)
..+++|++|++++|.+++..+..+...+++ |++|++++|. ++.... ...+++|++|++++|.+++.... .+.
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 356677777777776654444443322334 7777777665 111111 11566777777777766544222 233
Q ss_pred hcCCCCCEEEccCCCCC----cccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC---CcCcccc
Q 005619 161 IVLPKLDCMNISKNSFE----GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD---GQIFPNY 233 (688)
Q Consensus 161 ~~l~~L~~L~l~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~---~~~~~~~ 233 (688)
..+++|++|++++|.++ +.++..+.++++|++|++++|.+.+ ++ ..+..+++|++|+++..... ...+..+
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 46788888888888776 2344455677888888888887763 44 34567788888888753322 2334556
Q ss_pred cCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCc-hhhhCCcCCcEEEccccccCCCCcccccCCCCCc
Q 005619 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP-SWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312 (688)
Q Consensus 234 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 312 (688)
..+++|+.|+++++... .++..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 77788888888876433 566677778889999999888664333 3357789999999984322223344456788899
Q ss_pred EEEccC-----------CcCcccccccc--ccCccceEeeecCccccCCchhccC-CCCccEEeCc----CCcCCCc---
Q 005619 313 ILDISE-----------NNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIFR-GSALETLDLR----DNYFFGR--- 371 (688)
Q Consensus 313 ~L~Ls~-----------n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~----~n~l~~~--- 371 (688)
+|++++ +.+++.....+ .+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 999993 56655433332 6889999999888888777666665 8899999996 6677653
Q ss_pred --CchhhhcCCCccEEeccCCc--CCCCCchhhc-CCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEec
Q 005619 372 --IPHQINEHSNLRALLLRGNY--LQGPIPHQLC-QLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMD 446 (688)
Q Consensus 372 --~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~ 446 (688)
++..+..+++|+.|+++.|. +++..+..+. .+++|+.|++++|++++.....+.
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--------------------- 484 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS--------------------- 484 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH---------------------
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH---------------------
Confidence 44456779999999997544 5554444443 489999999999998753222111
Q ss_pred ccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc-CChhhhccCCCCeee
Q 005619 447 LGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD-IPSEICDLQNIHGLN 525 (688)
Q Consensus 447 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~~~~~l~~L~~L~ 525 (688)
..+++|+.|++++|.+++. ++..+..+++|+.|+
T Consensus 485 ---------------------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 519 (592)
T 3ogk_B 485 ---------------------------------------------RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLW 519 (592)
T ss_dssp ---------------------------------------------TCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEE
T ss_pred ---------------------------------------------hcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeE
Confidence 1157899999999998765 344557899999999
Q ss_pred CCCCcCccCCCccc-cCCCCCCeEeCCCC
Q 005619 526 LSHNFLSGSIPESF-SNLKMIESLDLSHN 553 (688)
Q Consensus 526 Ls~N~l~~~~p~~~-~~l~~L~~L~Ls~N 553 (688)
|++|++++.....+ ..++.++...+..+
T Consensus 520 ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 520 VQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999986643333 45676766655554
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.5e-30 Score=263.65 Aligned_cols=287 Identities=16% Similarity=0.131 Sum_probs=174.6
Q ss_pred CCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEE
Q 005619 212 CFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 212 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 291 (688)
|+.....+.+++.++. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4445556666666664 333332 4677777777777655555666777777777777777666666666777777777
Q ss_pred ccccccCCCCcccccCCCCCcEEEccCCcCccccc-ccc-ccCccceEeeecC-ccccCCchhccCCCCccEEeCcCCcC
Q 005619 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMI-STL-NLSSVEHLYLQSN-ALGGSIPNTIFRGSALETLDLRDNYF 368 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~~-~~~~L~~L~L~~n-~l~~~~~~~~~~~~~L~~L~l~~n~l 368 (688)
+++|.+++..+..+..+++|++|++++|++.+... ..+ .+++|++|++++| .+.+..+..+..+++|++|++++|++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 77777765555556666777777777776665444 233 5666666666665 34433344555555566666666655
Q ss_pred CCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccc
Q 005619 369 FGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLG 448 (688)
Q Consensus 369 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~ 448 (688)
.+..|..+..+++|++|++++|++....+..+..+++|+.|++++|.+++..+..+.
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~----------------------- 243 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS----------------------- 243 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--------------------------
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----------------------
Confidence 555555555555555555555555432222233455555555555555432221111
Q ss_pred ccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCC
Q 005619 449 VADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSH 528 (688)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~ 528 (688)
.......++.++|++
T Consensus 244 -----------------------------------------------------------------~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 244 -----------------------------------------------------------------TGETNSLIKKFTFRN 258 (353)
T ss_dssp --------------------------------------------------------------------CCCCCCEEEEES
T ss_pred -----------------------------------------------------------------cccccchhhcccccc
Confidence 011234455555555
Q ss_pred CcCcc----CCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCccc
Q 005619 529 NFLSG----SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQF 589 (688)
Q Consensus 529 N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~ 589 (688)
+.+++ .+|..++.+++|+.|||++|+++...+..|..+++|++|++++|++.|.+|...++
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l~~l 323 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 323 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHHH
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCcHHH
Confidence 55554 36777888899999999999998444444689999999999999999988754333
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=262.92 Aligned_cols=231 Identities=21% Similarity=0.187 Sum_probs=168.5
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCc
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLR 364 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 364 (688)
++++|++++|.+++..+..|.++++|++|++++|.+++..+..+ ++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 155 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR 155 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence 44444444444444444444455555555555555544444433 45555555555555554444456666777777777
Q ss_pred CCcCCCcCchhhhcCCCccEEeccCC-cCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeE
Q 005619 365 DNYFFGRIPHQINEHSNLRALLLRGN-YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMV 443 (688)
Q Consensus 365 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~ 443 (688)
+|++.+..+..+..+++|+.|++++| .+....+..+.++++|+.|++++|++++ +|. +
T Consensus 156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~------------------- 214 (452)
T 3zyi_A 156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-L------------------- 214 (452)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-C-------------------
T ss_pred CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-c-------------------
Confidence 77776655666777778888888774 4443344567888888888888888863 221 1
Q ss_pred EecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 444 VMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
..+++|+.|+|++|.+++..|..|..+++|+.
T Consensus 215 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 246 (452)
T 3zyi_A 215 ------------------------------------------------TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKK 246 (452)
T ss_dssp ------------------------------------------------TTCTTCCEEECTTSCCSEECGGGGTTCTTCCE
T ss_pred ------------------------------------------------cccccccEEECcCCcCcccCcccccCccCCCE
Confidence 11567899999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|+|++|++++..|..|.++++|+.|+|++|++++..+..+..+++|++|++++|++.|.|..
T Consensus 247 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred EEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence 99999999999999999999999999999999988888899999999999999999999864
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-28 Score=258.02 Aligned_cols=231 Identities=24% Similarity=0.247 Sum_probs=169.5
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCc
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLR 364 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~ 364 (688)
+++.|++++|.+.+..+..|.++++|++|++++|.+.+..+..+ ++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44444444444444444444555555555555555544444433 45555555555555554444456666777777777
Q ss_pred CCcCCCcCchhhhcCCCccEEeccCC-cCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeE
Q 005619 365 DNYFFGRIPHQINEHSNLRALLLRGN-YLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMV 443 (688)
Q Consensus 365 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~ 443 (688)
+|++.+..+..+..+++|+.|++++| .+....+..|.++++|+.|++++|+++ .+|. +
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~------------------- 203 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-L------------------- 203 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-C-------------------
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-c-------------------
Confidence 77776666667777788888888874 344334456788888888888888886 3331 1
Q ss_pred EecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCe
Q 005619 444 VMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHG 523 (688)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~ 523 (688)
..+++|+.|||++|.+++..|..|..+++|+.
T Consensus 204 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 235 (440)
T 3zyj_A 204 ------------------------------------------------TPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK 235 (440)
T ss_dssp ------------------------------------------------TTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ------------------------------------------------CCCcccCEEECCCCccCccChhhhccCccCCE
Confidence 11567899999999999999999999999999
Q ss_pred eeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 524 LNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 524 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|+|++|++++..+..|.++++|+.|||++|++++..+..|..+++|++|++++|++.|.|..
T Consensus 236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence 99999999999999999999999999999999988888999999999999999999998864
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-28 Score=253.19 Aligned_cols=275 Identities=19% Similarity=0.165 Sum_probs=174.2
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
...+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+. .++...+..+++|++|+++
T Consensus 34 ~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp SEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-ccCHhhcCCCCCCCEEECC
Confidence 34455555555 4554432 35556666666555444445555666666666666555 3333334555666666666
Q ss_pred cCcCCCcCcccccCCCCCCEEeccCCcCCCccc-ccccCCCCCCEEEccCC-cCCCCCchhhhCCcCCcEEEccccccCC
Q 005619 222 NNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIK-DGLLRSSELMVLDISNN-HLSGHIPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 222 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
+|.+++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 666654444445556666666666666653333 34556666666666666 3444445566666667777777776666
Q ss_pred CCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhc---cCCCCccEEeCcCCcCCC----c
Q 005619 300 NIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTI---FRGSALETLDLRDNYFFG----R 371 (688)
Q Consensus 300 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~l~~n~l~~----~ 371 (688)
..|..+..+++|++|++++|.+.......+ .+++|++|++++|.+++..+..+ .....++.++++++.+.+ .
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhh
Confidence 666666667777777777776655444333 46677777777777665433322 234667888888887765 3
Q ss_pred CchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc
Q 005619 372 IPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421 (688)
Q Consensus 372 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 421 (688)
+|..+..+++|+.|++++|+++...+..+..+++|++|++++|++++..|
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 67788999999999999999995444446899999999999999998766
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=7e-29 Score=251.49 Aligned_cols=258 Identities=22% Similarity=0.222 Sum_probs=180.2
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCC--CcccccCCCCCcEEEccCCcCccccccccccCccceEe
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN--IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLY 338 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 338 (688)
++|++|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|++++|.+.........+++|++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence 4555666666655544334455566666666666655422 23445556666666666666665444333666777777
Q ss_pred eecCccccCCc-hhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC-CCchhhcCCCCCCEEEccCCcC
Q 005619 339 LQSNALGGSIP-NTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG-PIPHQLCQLRKLSIMDLSHNRL 416 (688)
Q Consensus 339 L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ls~n~l 416 (688)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|++
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77777664433 466777888888888888877777778888888888888888876 5677888888899999999888
Q ss_pred ccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccccc
Q 005619 417 NGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDY 496 (688)
Q Consensus 417 ~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 496 (688)
++..|..+.+ +++
T Consensus 188 ~~~~~~~~~~-------------------------------------------------------------------l~~ 200 (306)
T 2z66_A 188 EQLSPTAFNS-------------------------------------------------------------------LSS 200 (306)
T ss_dssp CEECTTTTTT-------------------------------------------------------------------CTT
T ss_pred CCcCHHHhcC-------------------------------------------------------------------CCC
Confidence 8655554432 567
Q ss_pred ccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCC-CCCeEeCCCCcccccCCc--CCCCCCCCCEEe
Q 005619 497 MAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLK-MIESLDLSHNKLNGQIPP--QLTELHSLSKFD 573 (688)
Q Consensus 497 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~--~l~~l~~L~~L~ 573 (688)
|+.|++++|.+++..+..+..+++|+.|+|++|++++..|..+..++ +|+.|+|++|++++..+. ...-+...+.+.
T Consensus 201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~ 280 (306)
T 2z66_A 201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL 280 (306)
T ss_dssp CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence 88899999999888787888999999999999999998999998884 899999999999865321 112223344445
Q ss_pred cCCCcCccCCCC
Q 005619 574 VSYNDLSGPIPD 585 (688)
Q Consensus 574 ls~N~l~~~~p~ 585 (688)
+..+.+.|..|.
T Consensus 281 ~~~~~~~C~~p~ 292 (306)
T 2z66_A 281 VEVERMECATPS 292 (306)
T ss_dssp SCGGGCBEEESG
T ss_pred ccccccccCCch
Confidence 556666665553
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-28 Score=244.24 Aligned_cols=229 Identities=22% Similarity=0.217 Sum_probs=173.4
Q ss_pred cEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCC
Q 005619 288 YILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDN 366 (688)
Q Consensus 288 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n 366 (688)
++++.+++.++ .+|..+ .++|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 34455555444 223222 2456666666666665554444 5666666666666666555667777778888888888
Q ss_pred c-CCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEe
Q 005619 367 Y-FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVM 445 (688)
Q Consensus 367 ~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~ 445 (688)
. +....+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+.+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 151 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------- 151 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-------------------
Confidence 6 66555777888888888888888888777778888888888888888887544333322
Q ss_pred cccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeee
Q 005619 446 DLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525 (688)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~ 525 (688)
+++|+.|++++|++++..+..|..+++|+.|+
T Consensus 152 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 183 (285)
T 1ozn_A 152 ------------------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLL 183 (285)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEE
Confidence 56788889999988877777899999999999
Q ss_pred CCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC
Q 005619 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586 (688)
Q Consensus 526 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 586 (688)
|++|.+++..|..|+++++|+.|++++|++++..+..+..+++|++|++++|++.|.++..
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH
Confidence 9999999888999999999999999999999877777999999999999999999988754
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-27 Score=242.62 Aligned_cols=235 Identities=18% Similarity=0.228 Sum_probs=170.5
Q ss_pred CCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEee
Q 005619 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYL 339 (688)
Q Consensus 260 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L 339 (688)
.+.++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++..+.....+++|++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 356777777777776 55666666777777777777776 5666666677777777776666633222225566666666
Q ss_pred ecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccc
Q 005619 340 QSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS 419 (688)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 419 (688)
++|.+.+.+|..+.. .. .+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 158 ~~n~~~~~~p~~~~~------~~---------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------TD---------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------EC----------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------cc---------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 665555555543322 00 1122445788888888888887 677778888888888888888874
Q ss_pred cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccE
Q 005619 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499 (688)
Q Consensus 420 ~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 499 (688)
+|..+.. +++|+.
T Consensus 221 l~~~l~~-------------------------------------------------------------------l~~L~~ 233 (328)
T 4fcg_A 221 LGPAIHH-------------------------------------------------------------------LPKLEE 233 (328)
T ss_dssp CCGGGGG-------------------------------------------------------------------CTTCCE
T ss_pred Cchhhcc-------------------------------------------------------------------CCCCCE
Confidence 4443332 567888
Q ss_pred EEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcC
Q 005619 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDL 579 (688)
Q Consensus 500 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l 579 (688)
|++++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..++++++|+.|+|++|++.+.+|..+.++++|+.+++..|.+
T Consensus 234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 88888888888888888899999999999888888888888999999999999999889999999999999998887755
Q ss_pred c
Q 005619 580 S 580 (688)
Q Consensus 580 ~ 580 (688)
.
T Consensus 314 ~ 314 (328)
T 4fcg_A 314 A 314 (328)
T ss_dssp C
T ss_pred H
Confidence 4
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=240.95 Aligned_cols=236 Identities=19% Similarity=0.206 Sum_probs=188.8
Q ss_pred CCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEE
Q 005619 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQIL 314 (688)
Q Consensus 235 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 314 (688)
..++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+..+++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 67888888999999999999999 88999999999999999999999 778899999999999
Q ss_pred EccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC
Q 005619 315 DISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG 394 (688)
Q Consensus 315 ~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 394 (688)
++++|++.+..+..+. .. ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++
T Consensus 156 ~L~~n~~~~~~p~~~~-----~~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 220 (328)
T 4fcg_A 156 SIRACPELTELPEPLA-----ST---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220 (328)
T ss_dssp EEEEETTCCCCCSCSE-----EE---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC
T ss_pred ECCCCCCccccChhHh-----hc---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc
Confidence 9999988877665431 11 11223555677777777777775 566677777777788887777774
Q ss_pred CCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCc
Q 005619 395 PIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGT 474 (688)
Q Consensus 395 ~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 474 (688)
+|..+..+++|++|++++|++.+.+|..+.+
T Consensus 221 -l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------------------------------------------------ 251 (328)
T 4fcg_A 221 -LGPAIHHLPKLEELDLRGCTALRNYPPIFGG------------------------------------------------ 251 (328)
T ss_dssp -CCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------------------------------------------------
T ss_pred -CchhhccCCCCCEEECcCCcchhhhHHHhcC------------------------------------------------
Confidence 5556777788888888887777766654432
Q ss_pred ceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCc
Q 005619 475 QVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 554 (688)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 554 (688)
+++|+.|++++|.+.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.+++..|.
T Consensus 252 -------------------l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 252 -------------------RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp -------------------CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred -------------------CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 4567788888888888888888888888888888888888888888888888888888776
Q ss_pred cc
Q 005619 555 LN 556 (688)
Q Consensus 555 l~ 556 (688)
+.
T Consensus 313 ~~ 314 (328)
T 4fcg_A 313 QA 314 (328)
T ss_dssp SC
T ss_pred HH
Confidence 65
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-27 Score=234.52 Aligned_cols=227 Identities=21% Similarity=0.220 Sum_probs=160.3
Q ss_pred CEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccC
Q 005619 191 RLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISN 270 (688)
Q Consensus 191 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 270 (688)
++++.+++.+. .+|... .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45555555554 444322 34566666666666655555566666666666666666655566666666777777777
Q ss_pred Cc-CCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCC
Q 005619 271 NH-LSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSI 348 (688)
Q Consensus 271 n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~ 348 (688)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+ .+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 65 555556666677777777777777766666667777777777777777776665545 6777777777777777555
Q ss_pred chhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc
Q 005619 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421 (688)
Q Consensus 349 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 421 (688)
+..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 5567778888888888888888778888888889999999998887777778888999999999998875443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-30 Score=285.35 Aligned_cols=83 Identities=12% Similarity=0.012 Sum_probs=43.4
Q ss_pred ccccEEEccCCcccccCChhh-hccCCCCeeeCCCCcCccCCCc-cccCCCCCCeEeCCCCcccccCCcCC-CCCCCCCE
Q 005619 495 DYMAGLDLSSNKLTGDIPSEI-CDLQNIHGLNLSHNFLSGSIPE-SFSNLKMIESLDLSHNKLNGQIPPQL-TELHSLSK 571 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~ 571 (688)
++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++..+. ....+++|+.|++++|+++......+ ..++.|+.
T Consensus 456 ~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i 535 (594)
T 2p1m_B 456 KKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNV 535 (594)
T ss_dssp TTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEE
T ss_pred hhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEE
Confidence 456666666666654444444 4566666666666666443332 23345666666666666643322223 34455554
Q ss_pred EecCCC
Q 005619 572 FDVSYN 577 (688)
Q Consensus 572 L~ls~N 577 (688)
..+..+
T Consensus 536 ~~~~~~ 541 (594)
T 2p1m_B 536 EVIDER 541 (594)
T ss_dssp EEECSS
T ss_pred EEecCC
Confidence 444444
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-29 Score=254.31 Aligned_cols=265 Identities=20% Similarity=0.212 Sum_probs=181.8
Q ss_pred CCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC
Q 005619 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318 (688)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 318 (688)
++..+++.+.+.......+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3344455555443333444455677777777777776666677777777777777777765443 67777777777777
Q ss_pred CcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCch
Q 005619 319 NNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398 (688)
Q Consensus 319 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 398 (688)
|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..+++|++|++++|.+++..+.
T Consensus 90 n~l~~l~----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 90 NYVQELL----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp SEEEEEE----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred Ccccccc----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 7776544 236777777777777644333 246688888888888776666777788888888888888766666
Q ss_pred hh-cCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceE
Q 005619 399 QL-CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVE 477 (688)
Q Consensus 399 ~~-~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 477 (688)
.+ ..+++|++|++++|.+++. |..
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~~------------------------------------------------------ 187 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KGQ------------------------------------------------------ 187 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-ECC------------------------------------------------------
T ss_pred HHhhccCcCCEEECCCCcCccc-ccc------------------------------------------------------
Confidence 55 3678888888888887632 110
Q ss_pred EEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc-
Q 005619 478 VNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN- 556 (688)
Q Consensus 478 ~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~- 556 (688)
..+++|+.|+|++|++++. |..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|+++
T Consensus 188 --------------~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~ 251 (317)
T 3o53_A 188 --------------VVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHC 251 (317)
T ss_dssp --------------CCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBH
T ss_pred --------------cccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccC
Confidence 0145677788888888754 444777888888888888887 46667777888888888888887
Q ss_pred ccCCcCCCCCCCCCEEecCC-CcCccCC
Q 005619 557 GQIPPQLTELHSLSKFDVSY-NDLSGPI 583 (688)
Q Consensus 557 ~~~p~~l~~l~~L~~L~ls~-N~l~~~~ 583 (688)
+.+|..+..+++|+.+++++ +.+.|..
T Consensus 252 ~~~~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred cCHHHHHhccccceEEECCCchhccCCc
Confidence 66677777777787777773 3455543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-26 Score=246.72 Aligned_cols=228 Identities=23% Similarity=0.240 Sum_probs=158.3
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEee
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYL 339 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L 339 (688)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..+ .+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 455666666666655555556666666666666666655555556666666666666666665555544 5666666666
Q ss_pred ecCccccCCchhccCCCCccEEeCcCC-cCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcc
Q 005619 340 QSNALGGSIPNTIFRGSALETLDLRDN-YFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG 418 (688)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 418 (688)
++|.++...+..+..+++|+.|++++| .+....+..+..+++|+.|++++|++++. | .+..+++|+.|++++|++++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 666666444456666777777777774 33333334577778888888888888743 3 46778888888888888876
Q ss_pred ccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccccccc
Q 005619 419 SIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA 498 (688)
Q Consensus 419 ~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 498 (688)
..|..+.+ +++|+
T Consensus 233 ~~~~~~~~-------------------------------------------------------------------l~~L~ 245 (452)
T 3zyi_A 233 IRPGSFHG-------------------------------------------------------------------LSSLK 245 (452)
T ss_dssp ECGGGGTT-------------------------------------------------------------------CTTCC
T ss_pred cCcccccC-------------------------------------------------------------------ccCCC
Confidence 66655433 45788
Q ss_pred EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 499 ~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 246 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred EEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 88888888888888888888889999999998887777788888889999999888764
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=245.61 Aligned_cols=228 Identities=26% Similarity=0.287 Sum_probs=151.5
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEee
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYL 339 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L 339 (688)
++++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|++++..+..+ .+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 445555555555555555555555555555555555555555555556666666666666555554444 5566666666
Q ss_pred ecCccccCCchhccCCCCccEEeCcCCc-CCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcc
Q 005619 340 QSNALGGSIPNTIFRGSALETLDLRDNY-FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG 418 (688)
Q Consensus 340 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 418 (688)
++|.++...+..+..+++|++|++++|. +....+..|..+++|+.|++++|+++. +| .+..+++|+.|++++|++++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 6666654444556666777777777643 333333456777777777777777763 34 36677788888888888776
Q ss_pred ccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccccccc
Q 005619 419 SIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA 498 (688)
Q Consensus 419 ~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~ 498 (688)
..|..+.+ +++|+
T Consensus 222 ~~~~~~~~-------------------------------------------------------------------l~~L~ 234 (440)
T 3zyj_A 222 IRPGSFQG-------------------------------------------------------------------LMHLQ 234 (440)
T ss_dssp ECTTTTTT-------------------------------------------------------------------CTTCC
T ss_pred cChhhhcc-------------------------------------------------------------------CccCC
Confidence 55554432 45677
Q ss_pred EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 499 ~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88888888888888888888888888888888887777778888888888888887753
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=247.79 Aligned_cols=249 Identities=19% Similarity=0.203 Sum_probs=173.3
Q ss_pred CCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC-CCCccccc-------CCCCCcEEEccCCcCccccccc--
Q 005619 259 RSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE-GNIPVQFN-------NLAILQILDISENNLSGSMIST-- 328 (688)
Q Consensus 259 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~Ls~n~l~~~~~~~-- 328 (688)
..++|+.|++++|.+ .+|..+... |+.|++++|.+. ..++..+. ++++|++|++++|++++..+..
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344556666666666 445444433 666666666653 23343333 4666666666666666544443
Q ss_pred -cccCccceEeeecCccccCCchhccCC-----CCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCC--Cchhh
Q 005619 329 -LNLSSVEHLYLQSNALGGSIPNTIFRG-----SALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP--IPHQL 400 (688)
Q Consensus 329 -~~~~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~ 400 (688)
..+++|++|++++|.+++. |..+..+ ++|++|++++|++.+..+..++.+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 2566677777777777654 5555544 7788888888888777777788888888888888887654 23344
Q ss_pred --cCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEE
Q 005619 401 --CQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEV 478 (688)
Q Consensus 401 --~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 478 (688)
..+++|++|++++|++++ +|.....+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~-------------------------------------------------- 224 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMET-PSGVCSALA-------------------------------------------------- 224 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCC-HHHHHHHHH--------------------------------------------------
T ss_pred HhccCCCCCEEECCCCcCcc-hHHHHHHHH--------------------------------------------------
Confidence 778888899998888873 221111100
Q ss_pred EeeeccccccccccccccccEEEccCCcccccCC-hhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 479 NFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP-SEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 479 ~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
..++.|+.||+++|++++..| ..+..+++|+.|+|++|+++ .+|..+. ++|+.|||++|++++
T Consensus 225 -------------~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~ 288 (312)
T 1wwl_A 225 -------------AARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR 288 (312)
T ss_dssp -------------HTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS
T ss_pred -------------hcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC
Confidence 115678889999999988775 55677899999999999999 7787776 899999999999997
Q ss_pred cCCcCCCCCCCCCEEecCCCcCcc
Q 005619 558 QIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 558 ~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
. |. +..+++|++|++++|++++
T Consensus 289 ~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 289 N-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp C-CC-TTTSCEEEEEECTTCTTTC
T ss_pred C-hh-HhhCCCCCEEeccCCCCCC
Confidence 6 55 8999999999999999886
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-29 Score=277.49 Aligned_cols=445 Identities=12% Similarity=0.092 Sum_probs=228.6
Q ss_pred CEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCccccccc--------------CCCCCcceeEEECCCCCCCC-cc
Q 005619 21 EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIE--------------NCLPTFQLKVLSLPNCNLGV-IP 85 (688)
Q Consensus 21 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~--------------~~~~l~~L~~L~l~~n~l~~-lp 85 (688)
+.++++.+... .|...+..+++|+.|+++++......... ....+++|++|++++|.++. .+
T Consensus 46 ~~l~~~~~~~~---~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~ 122 (594)
T 2p1m_B 46 RKVFIGNCYAV---SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCL 122 (594)
T ss_dssp CEEEESSTTSS---CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHH
T ss_pred eEEeecccccc---CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHH
Confidence 34555544322 23345667777777777776543222110 01235566667776666532 23
Q ss_pred hhhh-CCCCCCEEECCCC-cCCCCCchHHhhCCCCCcEEEccCCCCCCCC------CCCCCCCcCEEEccCCC--CCCCC
Q 005619 86 NFLL-HQFNLKYLDLSHN-KLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ------LTSAQHGLISLDISSNN--FTGKL 155 (688)
Q Consensus 86 ~~~~-~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~~L~~L~ls~n~--~~~~~ 155 (688)
..+. .+++|++|++++| .+++.....+..++++|++|++++|.+++.. ....+++|++|++++|. ++...
T Consensus 123 ~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~ 202 (594)
T 2p1m_B 123 ELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSA 202 (594)
T ss_dssp HHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHH
T ss_pred HHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHH
Confidence 3333 5667777777766 3432212233345677777777766655422 11245566666666665 22111
Q ss_pred ChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccC
Q 005619 156 PQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVN 235 (688)
Q Consensus 156 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~ 235 (688)
...+...+++|++|++++|...+.++..+..+++|++|+++.+... +..+.+.+ .+..+.+
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~------------------~~~~~~~~-l~~~l~~ 263 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAE------------------VRPDVYSG-LSVALSG 263 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCC------------------CCHHHHHH-HHHHHHT
T ss_pred HHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCc------------------cchhhHHH-HHHHHhc
Confidence 1222224566666666666222225555666666666665443210 00111111 1123334
Q ss_pred CCCCCEE-eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCc-hhhhCCcCCcEEEccccccCCC-CcccccCCCCCc
Q 005619 236 LTRLLFL-YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP-SWMGNFSNLYILSMSKNLLEGN-IPVQFNNLAILQ 312 (688)
Q Consensus 236 l~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~ 312 (688)
+++|+.| .+..... +.++..+..+++|++|++++|.+++... ..+..+++|++|++++| +... .+.....+++|+
T Consensus 264 ~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~ 341 (594)
T 2p1m_B 264 CKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLR 341 (594)
T ss_dssp CTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCC
T ss_pred CCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCC
Confidence 4444444 2221111 1222222334555555555555432211 11334555555555555 2211 111122355566
Q ss_pred EEEcc---------CCcCcccccccc--ccCccceEeeecCccccCCchhcc-CCCCccEEeCc--C----CcCCCc---
Q 005619 313 ILDIS---------ENNLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIF-RGSALETLDLR--D----NYFFGR--- 371 (688)
Q Consensus 313 ~L~Ls---------~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~l~~~--- 371 (688)
+|++. .+.+++.....+ .+++|++|.+..+.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 342 ~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~ 421 (594)
T 2p1m_B 342 ELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLD 421 (594)
T ss_dssp EEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred EEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchh
Confidence 66552 233433222222 366777776666666654444443 46777777777 3 444321
Q ss_pred --CchhhhcCCCccEEeccCCcCCCCCchhhcC-CCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccc
Q 005619 372 --IPHQINEHSNLRALLLRGNYLQGPIPHQLCQ-LRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLG 448 (688)
Q Consensus 372 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~ 448 (688)
++..+..+++|+.|++++ .+++..+..+.. +++|+.|++++|.+++..+..+..
T Consensus 422 ~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~---------------------- 478 (594)
T 2p1m_B 422 IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLS---------------------- 478 (594)
T ss_dssp HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHH----------------------
T ss_pred hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHh----------------------
Confidence 122356678888888876 555444445544 788888888888876544333311
Q ss_pred ccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCCh-hhhccCCCCeeeCC
Q 005619 449 VADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPS-EICDLQNIHGLNLS 527 (688)
Q Consensus 449 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~-~~~~l~~L~~L~Ls 527 (688)
.+++|+.|+|++|.+++..+. ....+++|+.|+++
T Consensus 479 --------------------------------------------~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 479 --------------------------------------------GCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp --------------------------------------------HCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred --------------------------------------------cCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 156788888888888654443 33457888888888
Q ss_pred CCcCccCCCccc-cCCCCCCeEeCCCCccc
Q 005619 528 HNFLSGSIPESF-SNLKMIESLDLSHNKLN 556 (688)
Q Consensus 528 ~N~l~~~~p~~~-~~l~~L~~L~Ls~N~l~ 556 (688)
+|.++......+ ..+++|+...+..+.-.
T Consensus 515 ~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 515 SCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 888864433334 45677766666655443
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-28 Score=259.42 Aligned_cols=235 Identities=23% Similarity=0.242 Sum_probs=136.2
Q ss_pred CCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeee
Q 005619 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQ 340 (688)
Q Consensus 261 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~ 340 (688)
++|+.|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ .++|++|+++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~ 107 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA 107 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence 356666666666666555666666666666666666654433 5666666666666666654332 2556666666
Q ss_pred cCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhc-CCCCCCEEEccCCcCccc
Q 005619 341 SNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLC-QLRKLSIMDLSHNRLNGS 419 (688)
Q Consensus 341 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~ 419 (688)
+|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6666543332 235566666666666666565666666666666666666665555554 566666666666666532
Q ss_pred cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccE
Q 005619 420 IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499 (688)
Q Consensus 420 ~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 499 (688)
.+. ..++.|+.
T Consensus 185 ~~~---------------------------------------------------------------------~~l~~L~~ 195 (487)
T 3oja_A 185 KGQ---------------------------------------------------------------------VVFAKLKT 195 (487)
T ss_dssp ECC---------------------------------------------------------------------CCCTTCCE
T ss_pred ccc---------------------------------------------------------------------ccCCCCCE
Confidence 110 01345566
Q ss_pred EEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc-ccCCcCCCCCCCCCEEecC
Q 005619 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN-GQIPPQLTELHSLSKFDVS 575 (688)
Q Consensus 500 LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~l~~l~~L~~L~ls 575 (688)
|+|++|.+++..| .+..+++|+.|+|++|.+++ +|..++.+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 196 L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 196 LDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp EECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred EECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 6666666664333 35566666666666666663 4555566666666666666665 4445555555555555554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-25 Score=243.02 Aligned_cols=154 Identities=26% Similarity=0.295 Sum_probs=86.8
Q ss_pred CCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEE
Q 005619 188 QGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLD 267 (688)
Q Consensus 188 ~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 267 (688)
.+++.|++++|.++ .+|.... ++|+.|++++|.++. +|. .+++|++|++++|.+++ +|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence 35778888888877 6666442 577777777777764 233 45677777777777663 333 456667777
Q ss_pred ccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccC
Q 005619 268 ISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGS 347 (688)
Q Consensus 268 Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 347 (688)
+++|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|.+++.+. .+++|+.|++++|.++ .
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-S 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-C
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC-C
Confidence 777666643 22 34566666666666653 2322 2556666666665554321 2334455555555544 2
Q ss_pred CchhccCCCCccEEeCcCCcC
Q 005619 348 IPNTIFRGSALETLDLRDNYF 368 (688)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~n~l 368 (688)
+| ..+++|+.|++++|++
T Consensus 176 l~---~~~~~L~~L~Ls~N~l 193 (622)
T 3g06_A 176 LP---MLPSGLQELSVSDNQL 193 (622)
T ss_dssp CC---CCCTTCCEEECCSSCC
T ss_pred Cc---ccCCCCcEEECCCCCC
Confidence 33 2234444444444444
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-28 Score=245.33 Aligned_cols=249 Identities=22% Similarity=0.207 Sum_probs=185.3
Q ss_pred cCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCC-CCCchhhh-------CCcCCcEEEccccccCCCCcccc
Q 005619 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS-GHIPSWMG-------NFSNLYILSMSKNLLEGNIPVQF 305 (688)
Q Consensus 234 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~l 305 (688)
...++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|.+++..|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 3445666666666666 444444332 666777777663 34454444 57788888888888877777765
Q ss_pred --cCCCCCcEEEccCCcCcccccccc-cc-----CccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCc--Cchh
Q 005619 306 --NNLAILQILDISENNLSGSMISTL-NL-----SSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR--IPHQ 375 (688)
Q Consensus 306 --~~l~~L~~L~Ls~n~l~~~~~~~~-~~-----~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~ 375 (688)
..+++|++|++++|++++. +..+ .+ ++|++|++++|++++..+..+..+++|++|++++|++.+. .+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7788888888888888776 3333 44 7889999999988877778888889999999999987664 2334
Q ss_pred h--hcCCCccEEeccCCcCCCC---CchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEeccccc
Q 005619 376 I--NEHSNLRALLLRGNYLQGP---IPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVA 450 (688)
Q Consensus 376 ~--~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 450 (688)
+ ..+++|++|++++|++++. ....+..+++|++|++++|++++..|....
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~------------------------- 249 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC------------------------- 249 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC-------------------------
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh-------------------------
Confidence 4 7889999999999999832 223456789999999999999865532110
Q ss_pred ccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCc
Q 005619 451 DIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF 530 (688)
Q Consensus 451 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 530 (688)
..++.|+.|+|++|+++ .+|..+. ++|+.|+|++|+
T Consensus 250 -----------------------------------------~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 250 -----------------------------------------DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp -----------------------------------------CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred -----------------------------------------hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 11567999999999998 7777666 899999999999
Q ss_pred CccCCCccccCCCCCCeEeCCCCccccc
Q 005619 531 LSGSIPESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 531 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
+++. |. +..+++|++|+|++|++++.
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 9966 66 89999999999999999863
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.9e-25 Score=241.46 Aligned_cols=265 Identities=26% Similarity=0.293 Sum_probs=153.7
Q ss_pred ceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCC
Q 005619 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSN 149 (688)
Q Consensus 70 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n 149 (688)
+++.|++++|.++.+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++.++. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCC
Confidence 45666666666666665443 56777777777766 4554 35667777777776665432 5566666666666
Q ss_pred CCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcC
Q 005619 150 NFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI 229 (688)
Q Consensus 150 ~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~ 229 (688)
.++ .+|. .+++|+.|++++|.++. +|.. +++|++|++++|.++ .+|. .+.+|+.|++++|.++..
T Consensus 112 ~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~-~l~~----~~~~L~~L~L~~N~l~~l- 176 (622)
T 3g06_A 112 PLT-HLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLA-SLPA----LPSELCKLWAYNNQLTSL- 176 (622)
T ss_dssp CCC-CCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-
T ss_pred cCC-CCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCC-CcCC----ccCCCCEEECCCCCCCCC-
Confidence 666 4444 35666667776666664 3332 366667777776665 3432 235666666666666642
Q ss_pred cccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCC
Q 005619 230 FPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLA 309 (688)
Q Consensus 230 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~ 309 (688)
+ ..+++|+.|++++|.+++ +|.. .++|+.|++++|.++. +|. .+++|++|++++|.+++ +| ..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~ 241 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPS 241 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCT
T ss_pred c---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCC
Confidence 2 334566666666666653 2221 3566666666666653 232 23556666666666654 23 3345
Q ss_pred CCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhh
Q 005619 310 ILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQIN 377 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 377 (688)
+|+.|++++|.++..+. .+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+.
T Consensus 242 ~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 242 ELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred cCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 56666666666654333 3455666666666655 4555555566666666666666555554443
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-27 Score=243.10 Aligned_cols=258 Identities=17% Similarity=0.160 Sum_probs=183.0
Q ss_pred cCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEc
Q 005619 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL 220 (688)
Q Consensus 141 L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 220 (688)
++..+++.+.+. ..+..++..+++|++|++++|.+++..|..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 344555555554 4555555567788888888888887777788888888888888888874433 567888888888
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCC
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 300 (688)
++|.+++.. ..++|++|++++|.+++..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 888876432 3378888888888887654433 46788888888888877676777788888888888888766
Q ss_pred Ccccc-cCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcC
Q 005619 301 IPVQF-NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEH 379 (688)
Q Consensus 301 ~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 379 (688)
.+..+ ..+++|++|++++|.+++.... ..+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l 236 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence 66655 3677888888888877765322 246777777777777763 4444666677777777777775 345566667
Q ss_pred CCccEEeccCCcCC-CCCchhhcCCCCCCEEEccC
Q 005619 380 SNLRALLLRGNYLQ-GPIPHQLCQLRKLSIMDLSH 413 (688)
Q Consensus 380 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~ 413 (688)
++|+.|++++|++. +..+..+..+++|+.+++++
T Consensus 237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCEEEccCCCccCcCHHHHHhccccceEEECCC
Confidence 77777777777776 55666666777777776663
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.4e-26 Score=224.71 Aligned_cols=215 Identities=23% Similarity=0.228 Sum_probs=157.7
Q ss_pred CCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEecc
Q 005619 310 ILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 388 (688)
+|++|++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555555544333 55566666666666654445566667777777777777766666677777778888888
Q ss_pred CCcCCCCCchhhcCCCCCCEEEccCCcCccc-cchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCC
Q 005619 389 GNYLQGPIPHQLCQLRKLSIMDLSHNRLNGS-IPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGI 467 (688)
Q Consensus 389 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (688)
+|.+.+..+..+..+++|++|++++|.+++. +|..+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------- 147 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------- 147 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG-----------------------------------------
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhcc-----------------------------------------
Confidence 8877766666677788888888888887652 3554432
Q ss_pred CCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCC----eeeCCCCcCccCCCccccCCC
Q 005619 468 DGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIH----GLNLSHNFLSGSIPESFSNLK 543 (688)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~ 543 (688)
+++|+.|++++|++++..+..+..+++|+ .|++++|.+++..+..+.. .
T Consensus 148 --------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~ 200 (276)
T 2z62_A 148 --------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I 200 (276)
T ss_dssp --------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C
T ss_pred --------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-C
Confidence 45678888888888877777777777777 8999999999766666554 4
Q ss_pred CCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCc
Q 005619 544 MIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTF 592 (688)
Q Consensus 544 ~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~ 592 (688)
+|+.|+|++|++++..+..+..+++|++|++++|+++|.||...++..|
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l~~l~~~ 249 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRW 249 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTTHHHHHH
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCchHHHHHH
Confidence 8999999999999887778899999999999999999999876544433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-26 Score=242.40 Aligned_cols=221 Identities=21% Similarity=0.174 Sum_probs=192.9
Q ss_pred CCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEe
Q 005619 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362 (688)
Q Consensus 283 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 362 (688)
.+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+ ...+++|++|++++|.+++. + ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-C----CCCCcCEEE
Confidence 34589999999999999888999999999999999999998766 44899999999999999843 3 238999999
Q ss_pred CcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccccccee
Q 005619 363 LRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVM 442 (688)
Q Consensus 363 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~ 442 (688)
+++|.+++..+. .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..
T Consensus 106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~---------------- 166 (487)
T 3oja_A 106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA---------------- 166 (487)
T ss_dssp CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG----------------
T ss_pred CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh----------------
Confidence 999999877654 4688999999999999988989999999999999999999877765531
Q ss_pred EEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCC
Q 005619 443 VVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIH 522 (688)
Q Consensus 443 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~ 522 (688)
.++.|+.|+|++|.+++..+ +..+++|+
T Consensus 167 --------------------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 194 (487)
T 3oja_A 167 --------------------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLK 194 (487)
T ss_dssp --------------------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCC
T ss_pred --------------------------------------------------hCCcccEEecCCCccccccc--cccCCCCC
Confidence 15789999999999997743 34699999
Q ss_pred eeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccC
Q 005619 523 GLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGP 582 (688)
Q Consensus 523 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 582 (688)
.|+|++|.+++.+| .++.+++|+.|+|++|++++ +|..+..+++|+.|++++|++.|.
T Consensus 195 ~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~ 252 (487)
T 3oja_A 195 TLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG 252 (487)
T ss_dssp EEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred EEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence 99999999997555 59999999999999999996 677899999999999999999853
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=216.46 Aligned_cols=210 Identities=23% Similarity=0.206 Sum_probs=171.4
Q ss_pred CCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccC
Q 005619 310 ILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRG 389 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 389 (688)
..+.++++++.++..+... .+++++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 4566777777666544322 25677788888877755556777888888888888888766666678888999999999
Q ss_pred CcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCC
Q 005619 390 NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDG 469 (688)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 469 (688)
|++++..+..+..+++|++|++++|++++..|..+.+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------------------------------- 131 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------------------------------- 131 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-------------------------------------------
Confidence 9988777777888899999999999887654443322
Q ss_pred CCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEe
Q 005619 470 RSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549 (688)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 549 (688)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|.++++|+.|+
T Consensus 132 ------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 187 (270)
T 2o6q_A 132 ------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLK 187 (270)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEE
Confidence 56789999999999987777899999999999999999988888899999999999
Q ss_pred CCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcc
Q 005619 550 LSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQ 588 (688)
Q Consensus 550 Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~ 588 (688)
|++|++++..+..+..+++|++|++++|++.|.|+....
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 226 (270)
T 2o6q_A 188 LDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGIIY 226 (270)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSSHH
T ss_pred CCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccHHH
Confidence 999999988888899999999999999999999875433
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=212.07 Aligned_cols=207 Identities=22% Similarity=0.162 Sum_probs=164.3
Q ss_pred ccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccE
Q 005619 305 FNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRA 384 (688)
Q Consensus 305 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 384 (688)
++.++++++++++++.++..+... .++++.|++++|.+++..+..+..+++|++|++++|.+++..+ .+.+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCE
Confidence 455566666666666666544333 2567777777777776666677778888888888888765433 267888888
Q ss_pred EeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceeccc
Q 005619 385 LLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSL 464 (688)
Q Consensus 385 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 464 (688)
|++++|+++ .+|..+..+++|++|++++|++++..|..+.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-------------------------------------- 122 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-------------------------------------- 122 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT--------------------------------------
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC--------------------------------------
Confidence 888888887 56777888889999999999888554444432
Q ss_pred CCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCC
Q 005619 465 DGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKM 544 (688)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 544 (688)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++
T Consensus 123 -----------------------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 123 -----------------------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp -----------------------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred -----------------------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 567888999999999888888899999999999999999777778899999
Q ss_pred CCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCC
Q 005619 545 IESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 545 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 584 (688)
|+.|+|++|+++ .+|..+..+++|+++++++|++.|.|.
T Consensus 174 L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~ 212 (290)
T 1p9a_G 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (290)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred CCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCc
Confidence 999999999999 678888888999999999999999873
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.2e-24 Score=208.08 Aligned_cols=213 Identities=21% Similarity=0.215 Sum_probs=169.4
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEcc
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 412 (688)
..++++++++.++ .+|..+. +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4567777777776 5665544 578999999999988888888899999999999999998888888999999999999
Q ss_pred CCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccc
Q 005619 413 HNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492 (688)
Q Consensus 413 ~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (688)
+|++++..+..+..
T Consensus 92 ~n~l~~~~~~~~~~------------------------------------------------------------------ 105 (251)
T 3m19_A 92 NNQLASLPLGVFDH------------------------------------------------------------------ 105 (251)
T ss_dssp TSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcccccChhHhcc------------------------------------------------------------------
Confidence 99998544443322
Q ss_pred ccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEE
Q 005619 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 493 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 572 (688)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|++|
T Consensus 106 -l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 106 -LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp -CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred -cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 5678999999999998888888999999999999999998888889999999999999999998888899999999999
Q ss_pred ecCCCcCccCCCCCcccCCcCc------cccCCCCCCCCCCCCCCCCCcc
Q 005619 573 DVSYNDLSGPIPDKEQFSTFDE------SSYRGNLHLCGPPINKSCTNLL 616 (688)
Q Consensus 573 ~ls~N~l~~~~p~~~~~~~~~~------~~~~~n~~l~~~p~~~~C~~~~ 616 (688)
++++|+++|.++...++..|.. ....|+ .+|+.|....|..+.
T Consensus 185 ~l~~N~~~c~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~C~~~~ 233 (251)
T 3m19_A 185 TLFGNQFDCSRCEILYLSQWIRENSNKVKDGTGQ-NLHESPDGVTCSDGK 233 (251)
T ss_dssp ECCSCCBCTTSTTHHHHHHHHHHSGGGBCC--------CCGGGCBBTTSC
T ss_pred EeeCCceeCCccccHHHHHHHHhcccceeeccCc-ccccCCCcCccCCCc
Confidence 9999999998554433322211 112233 367778888887654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.4e-23 Score=207.25 Aligned_cols=225 Identities=19% Similarity=0.213 Sum_probs=130.1
Q ss_pred EEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccC
Q 005619 144 LDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNN 223 (688)
Q Consensus 144 L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n 223 (688)
.+.++..++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+. .++...+..+++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 344444444 4555432 45677777777766655556666777777777777665 444444556666666666666
Q ss_pred cCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCC-CchhhhCCcCCcEEEccccccCCCCc
Q 005619 224 NFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGH-IPSWMGNFSNLYILSMSKNLLEGNIP 302 (688)
Q Consensus 224 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~ 302 (688)
.+++..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 66655555566666666666666666554444555566666666666665542 35555555555555555555554444
Q ss_pred ccccCCCCCcEEEccCCcCccccccccccCccc-eEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCC
Q 005619 303 VQFNNLAILQILDISENNLSGSMISTLNLSSVE-HLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSN 381 (688)
Q Consensus 303 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 381 (688)
..+..+++|+ .+. +|++++|.+++ ++.......+|+.|++++|++++..+..+..+++
T Consensus 167 ~~~~~l~~L~--------------------~l~l~L~ls~n~l~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 225 (276)
T 2z62_A 167 TDLRVLHQMP--------------------LLNLSLDLSLNPMNF-IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTS 225 (276)
T ss_dssp GGGHHHHTCT--------------------TCCEEEECCSSCCCE-ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCS
T ss_pred HHhhhhhhcc--------------------ccceeeecCCCcccc-cCccccCCCcccEEECCCCceeecCHhHhccccc
Confidence 4444444333 111 45555555542 2222333346777777777776655555667777
Q ss_pred ccEEeccCCcCCC
Q 005619 382 LRALLLRGNYLQG 394 (688)
Q Consensus 382 L~~L~L~~n~l~~ 394 (688)
|+.|++++|++.+
T Consensus 226 L~~L~l~~N~~~c 238 (276)
T 2z62_A 226 LQKIWLHTNPWDC 238 (276)
T ss_dssp CCEEECCSSCBCC
T ss_pred ccEEEccCCcccc
Confidence 7777777777764
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-24 Score=225.63 Aligned_cols=258 Identities=20% Similarity=0.194 Sum_probs=136.8
Q ss_pred EeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCc----hhhhCCc-CCcEEEccccccCCCCcccccCCCCCcEEEc
Q 005619 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIP----SWMGNFS-NLYILSMSKNLLEGNIPVQFNNLAILQILDI 316 (688)
Q Consensus 242 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 316 (688)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 3455555555555444444445555555555554443 3444444 45555555555544444443332
Q ss_pred cCCcCcccccccc-c-cCccceEeeecCccccCCchh----ccCC-CCccEEeCcCCcCCCcCchhhh----c-CCCccE
Q 005619 317 SENNLSGSMISTL-N-LSSVEHLYLQSNALGGSIPNT----IFRG-SALETLDLRDNYFFGRIPHQIN----E-HSNLRA 384 (688)
Q Consensus 317 s~n~l~~~~~~~~-~-~~~L~~L~L~~n~l~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~~~~~~----~-l~~L~~ 384 (688)
+ . .++|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+. . .++|++
T Consensus 75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 0 0 144555555555554433332 2222 5566666666666554443332 2 246666
Q ss_pred EeccCCcCCCCCc----hhhcCCC-CCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccc
Q 005619 385 LLLRGNYLQGPIP----HQLCQLR-KLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNST 459 (688)
Q Consensus 385 L~L~~n~l~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (688)
|++++|.+++..+ ..+..++ +|++|++++|++++..+..+...-
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l------------------------------- 191 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFL------------------------------- 191 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH-------------------------------
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHH-------------------------------
Confidence 6666666654332 2334443 666777777666655554443321
Q ss_pred eecccCCCCCCCCCcceEEEeeecccccccccccc-ccccEEEccCCccccc----CChhhhc-cCCCCeeeCCCCcCcc
Q 005619 460 VQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL-DYMAGLDLSSNKLTGD----IPSEICD-LQNIHGLNLSHNFLSG 533 (688)
Q Consensus 460 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~L~~LdLs~N~l~~~----~p~~~~~-l~~L~~L~Ls~N~l~~ 533 (688)
... +.|+.|||++|.+++. ++..+.. .++|+.|+|++|.+++
T Consensus 192 --------------------------------~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 192 --------------------------------ASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp --------------------------------HTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred --------------------------------HhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 002 3566677777766652 3344444 3467777777777765
Q ss_pred CCC----ccccCCCCCCeEeCCCCccccc-------CCcCCCCCCCCCEEecCCCcCccC
Q 005619 534 SIP----ESFSNLKMIESLDLSHNKLNGQ-------IPPQLTELHSLSKFDVSYNDLSGP 582 (688)
Q Consensus 534 ~~p----~~~~~l~~L~~L~Ls~N~l~~~-------~p~~l~~l~~L~~L~ls~N~l~~~ 582 (688)
..+ ..+..+++|+.|+|++|++.+. ++..+..+++|++||+++|++...
T Consensus 240 ~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 443 3345667777777777774432 233566677777777777777654
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=203.58 Aligned_cols=221 Identities=21% Similarity=0.225 Sum_probs=125.0
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
.+..+++..+.+... .....+++|+.|++++|.+.... ....+++|++|++++|.+++ + ..+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCC
Confidence 344445555544422 23445666777777777665432 22256666666666666653 2 2455566666666666
Q ss_pred CcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEe
Q 005619 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVM 445 (688)
Q Consensus 366 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~ 445 (688)
|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------------------- 155 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK------------------- 155 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred CccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-------------------
Confidence 6665555555566666666666666666555555566666666666666665333322211
Q ss_pred cccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeee
Q 005619 446 DLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLN 525 (688)
Q Consensus 446 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~ 525 (688)
+++|+.|++++|++++..+..|+.+++|+.|+
T Consensus 156 ------------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 187 (272)
T 3rfs_A 156 ------------------------------------------------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLR 187 (272)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------CccCCEEECCCCCcCccCHHHhcCCccCCEEE
Confidence 34555666666666655555555666666666
Q ss_pred CCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 526 LSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 526 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
|++|++++..|..++.+++|+.|++++|.+.+. ++.|+.++++.|.++|.+|.
T Consensus 188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBC
T ss_pred CCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccC
Confidence 666666655555556666666666666655543 23455556666666665553
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-24 Score=220.93 Aligned_cols=177 Identities=19% Similarity=0.185 Sum_probs=119.1
Q ss_pred EEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCccc----ccccCCC-CCCEEEccCCcCCCCCchhhhCC-----cC
Q 005619 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIK----DGLLRSS-ELMVLDISNNHLSGHIPSWMGNF-----SN 286 (688)
Q Consensus 217 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~-~L~~L~Ls~n~l~~~~~~~~~~l-----~~ 286 (688)
.++++.|.+++..+..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788999998888777777779999999999997766 6778888 89999999999998878777765 89
Q ss_pred CcEEEccccccCCCCccccc----CC-CCCcEEEccCCcCcccccccc-----c-cCccceEeeecCccccCCch----h
Q 005619 287 LYILSMSKNLLEGNIPVQFN----NL-AILQILDISENNLSGSMISTL-----N-LSSVEHLYLQSNALGGSIPN----T 351 (688)
Q Consensus 287 L~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~Ls~n~l~~~~~~~~-----~-~~~L~~L~L~~n~l~~~~~~----~ 351 (688)
|++|++++|.+++..+..+. .+ ++|++|++++|.+++.....+ . .++|++|++++|.+++..+. .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999998876665443 33 778888888888776554332 1 24556666665555533222 2
Q ss_pred ccCCC-CccEEeCcCCcCCCcCchhhh----cC-CCccEEeccCCcCC
Q 005619 352 IFRGS-ALETLDLRDNYFFGRIPHQIN----EH-SNLRALLLRGNYLQ 393 (688)
Q Consensus 352 ~~~~~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~ 393 (688)
+...+ +|++|++++|++++..+..+. .+ ++|+.|++++|.++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 22222 455555555555444333222 22 24555555555444
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.4e-22 Score=195.56 Aligned_cols=204 Identities=22% Similarity=0.233 Sum_probs=124.7
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
..+.++++++.++ .+|... .+++++|++++|.++...+..|..+++|++|++++|.++...
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~--------------- 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNI---PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP--------------- 77 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC---------------
T ss_pred CCCEEEccCCCCC-ccCCCC---CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC---------------
Confidence 3556666666665 444432 134555555555555444444555555555555555554333
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccC
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGS 347 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~ 347 (688)
+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+ .+++|++|++++|.+++.
T Consensus 78 ---------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 78 ---------AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp ---------TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ---------hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 3334444455555555554444444444555555555555555555444444 555666666666666544
Q ss_pred CchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcccc
Q 005619 348 IPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420 (688)
Q Consensus 348 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 420 (688)
.+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|++++|++....
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 221 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC 221 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence 4445667778888888888887776667888888888888888888766677888888999999999887554
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=9.6e-23 Score=202.12 Aligned_cols=185 Identities=21% Similarity=0.229 Sum_probs=108.8
Q ss_pred cCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCE
Q 005619 162 VLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF 241 (688)
Q Consensus 162 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 241 (688)
.+++|++|++++|.+++. +.+..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++
T Consensus 61 ~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 137 (272)
T 3rfs_A 61 YLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137 (272)
T ss_dssp GCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCE
Confidence 355555555555555532 24555556666666666555 344444455556666666666655554455556666666
Q ss_pred EeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcC
Q 005619 242 LYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNL 321 (688)
Q Consensus 242 L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l 321 (688)
|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 138 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (272)
T 3rfs_A 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 217 (272)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc
Confidence 66666666655555556666666666666666655555566666666666666666665555566666666666666655
Q ss_pred ccccccccccCccceEeeecCccccCCchhccCC
Q 005619 322 SGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG 355 (688)
Q Consensus 322 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 355 (688)
.+ .+++|+.+++..|.++|.+|..++.+
T Consensus 218 ~~------~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 218 DC------TCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CC------CTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred cc------cCcHHHHHHHHHHhCCCcccCccccc
Confidence 43 24455666666666666666555443
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-24 Score=227.05 Aligned_cols=253 Identities=19% Similarity=0.246 Sum_probs=152.0
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchh----hhCCcCCcEEEcccccc---CCCCcccccCCCCCcEEEccCCcCccccc
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSW----MGNFSNLYILSMSKNLL---EGNIPVQFNNLAILQILDISENNLSGSMI 326 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~----~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~ 326 (688)
+..+..+++|++|++++|.++...+.. +..+++|++|++++|.+ .+.+|..+..+ ..
T Consensus 25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l----------------~~ 88 (386)
T 2ca6_A 25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLL----------------LQ 88 (386)
T ss_dssp SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHH----------------HH
T ss_pred HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHH----------------HH
Confidence 334445556666666666655432222 34455555555555422 22223222100 00
Q ss_pred cccccCccceEeeecCcccc----CCchhccCCCCccEEeCcCCcCCCcCchhh----hcC---------CCccEEeccC
Q 005619 327 STLNLSSVEHLYLQSNALGG----SIPNTIFRGSALETLDLRDNYFFGRIPHQI----NEH---------SNLRALLLRG 389 (688)
Q Consensus 327 ~~~~~~~L~~L~L~~n~l~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~L~~ 389 (688)
....+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++
T Consensus 89 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~ 168 (386)
T 2ca6_A 89 ALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168 (386)
T ss_dssp HHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCS
T ss_pred HHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCC
Confidence 00134555555555555554 245556666777777777777644333333 233 7788888888
Q ss_pred CcCC-CCCc---hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccC
Q 005619 390 NYLQ-GPIP---HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLD 465 (688)
Q Consensus 390 n~l~-~~~~---~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 465 (688)
|+++ +.++ ..+..+++|+.|++++|+++......+..-.
T Consensus 169 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~------------------------------------- 211 (386)
T 2ca6_A 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG------------------------------------- 211 (386)
T ss_dssp SCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTT-------------------------------------
T ss_pred CCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHH-------------------------------------
Confidence 8776 3333 3566777888888888877621100010000
Q ss_pred CCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccc----ccCChhhhccCCCCeeeCCCCcCccC----CCc
Q 005619 466 GIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLT----GDIPSEICDLQNIHGLNLSHNFLSGS----IPE 537 (688)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~ 537 (688)
...+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|.
T Consensus 212 -------------------------l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 266 (386)
T 2ca6_A 212 -------------------------LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD 266 (386)
T ss_dssp -------------------------GGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred -------------------------hhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence 011567788888888885 56777788888888888888888865 456
Q ss_pred cc--cCCCCCCeEeCCCCcccc----cCCcCC-CCCCCCCEEecCCCcCccCCC
Q 005619 538 SF--SNLKMIESLDLSHNKLNG----QIPPQL-TELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 538 ~~--~~l~~L~~L~Ls~N~l~~----~~p~~l-~~l~~L~~L~ls~N~l~~~~p 584 (688)
.+ +.+++|+.|+|++|++++ .+|..+ .++++|++|++++|++++..|
T Consensus 267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 66 338888888888888887 466666 567888888888888887654
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=214.58 Aligned_cols=249 Identities=18% Similarity=0.251 Sum_probs=179.5
Q ss_pred CCCEEEccCCcCCCCCchhhhCC--cCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccc-ccccc-ccCccceE
Q 005619 262 ELMVLDISNNHLSGHIPSWMGNF--SNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGS-MISTL-NLSSVEHL 337 (688)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~~-~~~~L~~L 337 (688)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+ .+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3566666666654 3445555 6777777777777655544 44577777788877776654 33333 67788888
Q ss_pred eeecCccccCCchhccCCCCccEEeCcCC-cCCCc-CchhhhcCCCccEEeccCC-cCCCC-CchhhcCCC-CCCEEEcc
Q 005619 338 YLQSNALGGSIPNTIFRGSALETLDLRDN-YFFGR-IPHQINEHSNLRALLLRGN-YLQGP-IPHQLCQLR-KLSIMDLS 412 (688)
Q Consensus 338 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~ls 412 (688)
++++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888877777777888888999999988 56552 5666788899999999999 88754 566778888 99999999
Q ss_pred CC--cCc-cccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 413 HN--RLN-GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 413 ~n--~l~-~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
+| .++ +.+|..+.+
T Consensus 204 ~~~~~~~~~~l~~~~~~--------------------------------------------------------------- 220 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRR--------------------------------------------------------------- 220 (336)
T ss_dssp SCGGGSCHHHHHHHHHH---------------------------------------------------------------
T ss_pred CCcccCCHHHHHHHHhh---------------------------------------------------------------
Confidence 98 454 233332222
Q ss_pred cccccccccEEEccCCc-ccccCChhhhccCCCCeeeCCCCc-CccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCC
Q 005619 490 KGVILDYMAGLDLSSNK-LTGDIPSEICDLQNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH 567 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~ 567 (688)
+++|+.|++++|. +++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++. ..+..+.
T Consensus 221 ----~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~ 292 (336)
T 2ast_B 221 ----CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLK 292 (336)
T ss_dssp ----CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHH
T ss_pred ----CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHH
Confidence 5678999999998 777788889999999999999995 33222236788999999999998 332 2344442
Q ss_pred -CCCEEecCCCcCccCCCC
Q 005619 568 -SLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 568 -~L~~L~ls~N~l~~~~p~ 585 (688)
.+..|++++|++++..|.
T Consensus 293 ~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 293 EALPHLQINCSHFTTIARP 311 (336)
T ss_dssp HHSTTSEESCCCSCCTTCS
T ss_pred hhCcceEEecccCccccCC
Confidence 477778899999988775
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=198.16 Aligned_cols=203 Identities=24% Similarity=0.197 Sum_probs=144.2
Q ss_pred CCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEE
Q 005619 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISL 144 (688)
Q Consensus 65 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L 144 (688)
+.+++++++++++++.++.+|..+. +++++|++++|.+++..+ ..+..+++|++|++++|.++..+....+++|++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 82 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSL-ATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTL 82 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEG-GGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCH-HHhhcCCCCCEEECCCCccCcccCCCCCCcCCEE
Confidence 4556677788888888877776553 578888888888874333 3456788888888888888776555567777788
Q ss_pred EccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc
Q 005619 145 DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224 (688)
Q Consensus 145 ~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 224 (688)
++++|+++ .+|..+. .+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 83 ~Ls~N~l~-~l~~~~~-~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 83 DLSHNQLQ-SLPLLGQ-TLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp ECCSSCCS-SCCCCTT-TCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSC
T ss_pred ECCCCcCC-cCchhhc-cCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccccCCCEEECCCCc
Confidence 88877777 6666553 6777888888888777666677777777888888777776 5666666667777777777777
Q ss_pred CCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCC
Q 005619 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS 274 (688)
Q Consensus 225 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 274 (688)
++...+..|..+++|+.|++++|.++ .+|..+....+|+.+++++|.+.
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 77655555666777777777777766 45555555666666666666654
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=205.57 Aligned_cols=232 Identities=18% Similarity=0.176 Sum_probs=142.1
Q ss_pred CCCEEEccCCcCCCCCch---hhhCCcCCcEEEccccccCCCCcccc--cCCCCCcEEEccCCcCccccccccccCccce
Q 005619 262 ELMVLDISNNHLSGHIPS---WMGNFSNLYILSMSKNLLEGNIPVQF--NNLAILQILDISENNLSGSMISTLNLSSVEH 336 (688)
Q Consensus 262 ~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 336 (688)
.++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+...
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~------- 137 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA------- 137 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH-------
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH-------
Confidence 456666666554321100 01123446666666666555555544 455555555555555443211000
Q ss_pred EeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCC--C--chhhcCCCCCCEEEcc
Q 005619 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGP--I--PHQLCQLRKLSIMDLS 412 (688)
Q Consensus 337 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~ls 412 (688)
...+..+++|++|++++|++.+..+..++.+++|++|++++|++.+. + +..+..+++|++|+++
T Consensus 138 ------------~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls 205 (310)
T 4glp_A 138 ------------ELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR 205 (310)
T ss_dssp ------------HHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC
T ss_pred ------------HHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC
Confidence 02233456666666666666666666666667777777777765432 1 1223567778888888
Q ss_pred CCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccc
Q 005619 413 HNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492 (688)
Q Consensus 413 ~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (688)
+|+++ .+|.....+. .
T Consensus 206 ~N~l~-~l~~~~~~l~---------------------------------------------------------------~ 221 (310)
T 4glp_A 206 NTGME-TPTGVCAALA---------------------------------------------------------------A 221 (310)
T ss_dssp SSCCC-CHHHHHHHHH---------------------------------------------------------------H
T ss_pred CCCCC-chHHHHHHHH---------------------------------------------------------------h
Confidence 88775 2222111000 1
Q ss_pred ccccccEEEccCCcccccCChhhhcc---CCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCC
Q 005619 493 ILDYMAGLDLSSNKLTGDIPSEICDL---QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569 (688)
Q Consensus 493 ~l~~L~~LdLs~N~l~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 569 (688)
.++.|++|||++|++++..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|||++|++++. |. +..+++|
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L 296 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEV 296 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCc
Confidence 14677888888888887777777766 58999999999998 6677664 7899999999999865 33 6778899
Q ss_pred CEEecCCCcCcc
Q 005619 570 SKFDVSYNDLSG 581 (688)
Q Consensus 570 ~~L~ls~N~l~~ 581 (688)
++|++++|+++.
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999998864
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-24 Score=223.32 Aligned_cols=252 Identities=14% Similarity=0.207 Sum_probs=154.0
Q ss_pred CcccccCCCCCCEEeccCCcCCCccc----ccccCCCCCCEEEccCCcCC---CCCchhh-------hCCcCCcEEEccc
Q 005619 229 IFPNYVNLTRLLFLYLDNNHFSGKIK----DGLLRSSELMVLDISNNHLS---GHIPSWM-------GNFSNLYILSMSK 294 (688)
Q Consensus 229 ~~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~Ls~n~l~---~~~~~~~-------~~l~~L~~L~l~~ 294 (688)
++..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45567788999999999999987644 34678999999999997543 4555554 5778888888888
Q ss_pred cccCC----CCcccccCCCCCcEEEccCCcCcccccccc-c-cCccceEeeecCccccCCchhccCCCCccEEeCcCCcC
Q 005619 295 NLLEG----NIPVQFNNLAILQILDISENNLSGSMISTL-N-LSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYF 368 (688)
Q Consensus 295 n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~-~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l 368 (688)
|.+.+ .++..+..+++|++|++++|.++...+..+ . +..+ ..+.+.+ ..++|++|++++|++
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l-----~~~~~~~-------~~~~L~~L~L~~n~l 171 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL-----AVNKKAK-------NAPPLRSIICGRNRL 171 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH-----HHHHHHH-------TCCCCCEEECCSSCC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH-----hhhhhcc-------cCCCCcEEECCCCCC
Confidence 88876 356677778888888888888765433322 1 1000 0000000 004555555555555
Q ss_pred C-CcCc---hhhhcCCCccEEeccCCcCCC-----CCchhhcCCCCCCEEEccCCcCc----cccchhhhhhhhcccCCc
Q 005619 369 F-GRIP---HQINEHSNLRALLLRGNYLQG-----PIPHQLCQLRKLSIMDLSHNRLN----GSIPACITNLLFWKVGSR 435 (688)
Q Consensus 369 ~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~ls~n~l~----~~~p~~l~~l~~~~~~~~ 435 (688)
+ +..+ ..+..+++|++|++++|+++. ..+..+..+++|+.|++++|.++ +.+|..+..
T Consensus 172 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~--------- 242 (386)
T 2ca6_A 172 ENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS--------- 242 (386)
T ss_dssp TGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG---------
T ss_pred CcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc---------
Confidence 4 2222 244455566666666665541 12224555666666666666654 222222211
Q ss_pred ccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc----C
Q 005619 436 YLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD----I 511 (688)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~----~ 511 (688)
++.|+.|+|++|.+++. +
T Consensus 243 ----------------------------------------------------------~~~L~~L~L~~n~i~~~~~~~l 264 (386)
T 2ca6_A 243 ----------------------------------------------------------WPNLRELGLNDCLLSARGAAAV 264 (386)
T ss_dssp ----------------------------------------------------------CTTCCEEECTTCCCCHHHHHHH
T ss_pred ----------------------------------------------------------CCCcCEEECCCCCCchhhHHHH
Confidence 34566666666666554 3
Q ss_pred Chhhhc--cCCCCeeeCCCCcCcc----CCCccc-cCCCCCCeEeCCCCcccccC
Q 005619 512 PSEICD--LQNIHGLNLSHNFLSG----SIPESF-SNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 512 p~~~~~--l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~Ls~N~l~~~~ 559 (688)
|..+.. +++|+.|+|++|.+++ .+|..+ .++++|+.|+|++|++++..
T Consensus 265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 444533 6777777777777776 366555 55677777777777777655
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-23 Score=212.85 Aligned_cols=176 Identities=18% Similarity=0.182 Sum_probs=96.2
Q ss_pred CCCEEEcccCcCCCcCcccccCC--CCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCC-CchhhhCCcCCcEE
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNL--TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGH-IPSWMGNFSNLYIL 290 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 290 (688)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. .+..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 3334444 5677777777766655443 34566666666666666543 45555666666666
Q ss_pred EccccccCCCCcccccCCCCCcEEEccCC-cCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCC-cC
Q 005619 291 SMSKNLLEGNIPVQFNNLAILQILDISEN-NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDN-YF 368 (688)
Q Consensus 291 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l 368 (688)
++++|.+++..+..+..+++|++|++++| .+++. .++..+..+++|++|++++| .+
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------ALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH----------------------HHHHHHHHCTTCCEEECCCCTTC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH----------------------HHHHHHhcCCCCCEEcCCCCCCc
Confidence 66666665555555666666666666666 34432 12333344445555555555 44
Q ss_pred CCc-CchhhhcCC-CccEEeccCC--cCC-CCCchhhcCCCCCCEEEccCCc
Q 005619 369 FGR-IPHQINEHS-NLRALLLRGN--YLQ-GPIPHQLCQLRKLSIMDLSHNR 415 (688)
Q Consensus 369 ~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~~~~~~~l~~L~~L~ls~n~ 415 (688)
++. ++..+..++ +|++|++++| .++ +.++..+..+++|+.|++++|.
T Consensus 182 ~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~ 233 (336)
T 2ast_B 182 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233 (336)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred ChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence 332 334444555 5555555555 232 2234444455555555555555
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.8e-22 Score=193.86 Aligned_cols=195 Identities=17% Similarity=0.207 Sum_probs=99.2
Q ss_pred CCcEEEccCCcCcccccccc-ccCccceEeeecCc-cccCCchhccCCCCccEEeCcC-CcCCCcCchhhhcCCCccEEe
Q 005619 310 ILQILDISENNLSGSMISTL-NLSSVEHLYLQSNA-LGGSIPNTIFRGSALETLDLRD-NYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 386 (688)
+|++|++++|++++..+..+ .+++|++|++++|. +++..+..+..+++|++|++++ |++++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444333 44555555555554 4433333455555555555555 555444444555555555555
Q ss_pred ccCCcCCCCCchhhcCCCCCC---EEEccCC-cCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceec
Q 005619 387 LRGNYLQGPIPHQLCQLRKLS---IMDLSHN-RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQL 462 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~---~L~ls~n-~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 462 (688)
+++|++++ +|. +..+++|+ .|++++| .+++..+..+.+
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~------------------------------------ 153 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG------------------------------------ 153 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT------------------------------------
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc------------------------------------
Confidence 55555553 333 45555555 5555555 554322222211
Q ss_pred ccCCCCCCCCCcceEEEeeecccccccccccccccc-EEEccCCcccccCChhhhccCCCCeeeCCCCc-CccCCCcccc
Q 005619 463 SLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMA-GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNF-LSGSIPESFS 540 (688)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~ 540 (688)
++.|+ .|++++|+++...+..|.. ++|+.|+|++|+ +++..+..|+
T Consensus 154 -------------------------------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 154 -------------------------------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp -------------------------------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred -------------------------------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhh
Confidence 34455 5555555555333333333 556666666663 6555555566
Q ss_pred CC-CCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCC
Q 005619 541 NL-KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 541 ~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 577 (688)
++ ++|+.||+++|++++..+. .+++|+.|+++++
T Consensus 202 ~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 202 GVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred ccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 66 6666666666666633222 4455666666554
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-22 Score=202.52 Aligned_cols=223 Identities=23% Similarity=0.272 Sum_probs=173.0
Q ss_pred CCcEEEccCCcCcccccc----ccccCccceEeeecCccccCCchhc--cCCCCccEEeCcCCcCCCcCc----hhhhcC
Q 005619 310 ILQILDISENNLSGSMIS----TLNLSSVEHLYLQSNALGGSIPNTI--FRGSALETLDLRDNYFFGRIP----HQINEH 379 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~----~~~~~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~----~~~~~l 379 (688)
.++.+.+.++.++..... ....++|++|++++|.+.+..|..+ ..+++|++|++++|++.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777777766542221 1245679999999999988888877 788999999999999987554 344579
Q ss_pred CCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcccc--chhhhhhhhcccCCcccccceeEEecccccccccccc
Q 005619 380 SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI--PACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYN 457 (688)
Q Consensus 380 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~--p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (688)
++|++|++++|++.+..+..+..+++|++|++++|++.+.. +....
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~-------------------------------- 192 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC-------------------------------- 192 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC--------------------------------
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh--------------------------------
Confidence 99999999999999888899999999999999999986421 11000
Q ss_pred cceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccC--Ch-hhhccCCCCeeeCCCCcCccC
Q 005619 458 STVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI--PS-EICDLQNIHGLNLSHNFLSGS 534 (688)
Q Consensus 458 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~--p~-~~~~l~~L~~L~Ls~N~l~~~ 534 (688)
...+++|++|+|++|+++... +. .++.+++|++|+|++|++++.
T Consensus 193 ---------------------------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 193 ---------------------------------PHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp ---------------------------------TTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC
T ss_pred ---------------------------------hhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc
Confidence 012678999999999997322 12 357889999999999999998
Q ss_pred CCccccCC---CCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCccccCCCC
Q 005619 535 IPESFSNL---KMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNL 601 (688)
Q Consensus 535 ~p~~~~~l---~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~~~~~~n~ 601 (688)
+|..++.+ ++|++|+|++|+++ .+|..+. ++|++||+++|++++. |....+..+......+|+
T Consensus 240 ~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 240 VNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTT
T ss_pred chhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCC
Confidence 88888777 69999999999999 6777764 7999999999999973 333455556666666664
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.4e-21 Score=197.25 Aligned_cols=192 Identities=17% Similarity=0.258 Sum_probs=112.0
Q ss_pred CCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEec
Q 005619 308 LAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLL 387 (688)
Q Consensus 308 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 387 (688)
+++|++|++++|.+.... ....+++|++|++++|.+++ ++. +..+++|++|++++|++.+. + .+..+++|+.|++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEEC
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEEC
Confidence 344444444444444321 11244455555555555542 222 55556666666666665442 2 4566666666666
Q ss_pred cCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCC
Q 005619 388 RGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGI 467 (688)
Q Consensus 388 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (688)
++|++++. + .+..+++|+.|++++|.+++..+ +.
T Consensus 115 ~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~------------------------------------------ 148 (308)
T 1h6u_A 115 TSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LA------------------------------------------ 148 (308)
T ss_dssp TTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GG------------------------------------------
T ss_pred CCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--cc------------------------------------------
Confidence 66666643 2 26666666666666666653222 11
Q ss_pred CCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCe
Q 005619 468 DGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 547 (688)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 547 (688)
.++.|+.|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.
T Consensus 149 -------------------------~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~ 199 (308)
T 1h6u_A 149 -------------------------GLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIE 199 (308)
T ss_dssp -------------------------GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCE
T ss_pred -------------------------CCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCE
Confidence 14556667777777664333 6677777777777777775433 667777777
Q ss_pred EeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 548 LDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 548 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
|+|++|++++..| +..+++|++|++++|++++
T Consensus 200 L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 200 VHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp EECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred EEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 7777777775543 6777777777777777765
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=186.81 Aligned_cols=180 Identities=22% Similarity=0.189 Sum_probs=147.4
Q ss_pred CCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccC
Q 005619 310 ILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRG 389 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 389 (688)
..++++++++.++..+... .++++.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4566777777666544432 25677888888888777777788888899999999998888787888899999999999
Q ss_pred CcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCC
Q 005619 390 NYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDG 469 (688)
Q Consensus 390 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 469 (688)
|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------- 129 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR------------------------------------------- 129 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------------------------------
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-------------------------------------------
Confidence 9998777788888999999999999988544433322
Q ss_pred CCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEe
Q 005619 470 RSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLD 549 (688)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 549 (688)
++.|+.|+|++|++++..+..|+.+++|+.|+|++|++++..+..|..+++|+.|+
T Consensus 130 ------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 185 (251)
T 3m19_A 130 ------------------------LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTIT 185 (251)
T ss_dssp ------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred ------------------------CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEE
Confidence 56789999999999988887899999999999999999988888999999999999
Q ss_pred CCCCccccc
Q 005619 550 LSHNKLNGQ 558 (688)
Q Consensus 550 Ls~N~l~~~ 558 (688)
|++|++++.
T Consensus 186 l~~N~~~c~ 194 (251)
T 3m19_A 186 LFGNQFDCS 194 (251)
T ss_dssp CCSCCBCTT
T ss_pred eeCCceeCC
Confidence 999999876
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-20 Score=188.29 Aligned_cols=191 Identities=23% Similarity=0.353 Sum_probs=90.4
Q ss_pred CcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEcc
Q 005619 68 TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDIS 147 (688)
Q Consensus 68 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls 147 (688)
+++|++|++++|.+..+| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++.+....+++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT 115 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence 445556666666665555 3555666666666666665 3333 34556666666666555544322334444444444
Q ss_pred CCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCC
Q 005619 148 SNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG 227 (688)
Q Consensus 148 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 227 (688)
+|+++ .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.+.+ ++.
T Consensus 116 ~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~--------------------- 168 (308)
T 1h6u_A 116 STQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-LTP--------------------- 168 (308)
T ss_dssp TSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG---------------------
T ss_pred CCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCC-Chh---------------------
Confidence 44444 2222 1 234444555554444443221 4444444444444444431 221
Q ss_pred cCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC
Q 005619 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298 (688)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 298 (688)
+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 169 -----l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 -----LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp -----GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred -----hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 3344444444444444442221 3444455555555555543321 445555555555555554
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.85 E-value=8.3e-21 Score=184.42 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=105.8
Q ss_pred CCCEEEcccCcCCCcCcccccCCCCCCEEeccCCc-CCCcccccccCCCCCCEEEccC-CcCCCCCchhhhCCcCCcEEE
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNH-FSGKIKDGLLRSSELMVLDISN-NHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~ 291 (688)
+++.|++++|.+++..+..|.++++|++|++++|. ++...+..+..+++|++|++++ |.+++..+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 34444444444444333344444444444444443 4433333444455555555554 455444444455555555555
Q ss_pred ccccccCCCCcccccCCCCCc---EEEccCC-cCcccccccc-ccCccc-eEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 292 MSKNLLEGNIPVQFNNLAILQ---ILDISEN-NLSGSMISTL-NLSSVE-HLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~---~L~Ls~n-~l~~~~~~~~-~~~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
+++|.+++ +|. +..+++|+ +|++++| .+++..+..+ .+++|+ +|++++|.++ .+|......++|+.|++++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCC
Confidence 55555543 332 44455554 5666655 5555544444 555666 6666666665 4444333336677777777
Q ss_pred Cc-CCCcCchhhhcC-CCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 366 NY-FFGRIPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 366 n~-l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
|+ +++..+..+..+ ++|+.|++++|++++..+. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 74 665555667777 7777777777777743332 4667777777665
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.6e-21 Score=182.00 Aligned_cols=158 Identities=21% Similarity=0.224 Sum_probs=130.4
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCc-hhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIP-HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
+.+++++|.++. +|..+. ..++.|++++|++++..+ ..|..+++|+.|++++|++++..|..+.+
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------- 79 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------- 79 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-----------
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-----------
Confidence 477777777744 454442 356788888888876644 45778888888888888887554444432
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
+++|+.|+|++|.+++..|..|..
T Consensus 80 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 103 (220)
T 2v70_A 80 --------------------------------------------------------ASGVNEILLTSNRLENVQHKMFKG 103 (220)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCGGGGTT
T ss_pred --------------------------------------------------------CCCCCEEECCCCccCccCHhHhcC
Confidence 567888999999998888888999
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCC
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~ 586 (688)
+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|++|++++|+++|.|+..
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999999999999999999999999999999999999999999999999999999999999999998743
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-20 Score=180.14 Aligned_cols=157 Identities=22% Similarity=0.259 Sum_probs=130.1
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~ 438 (688)
+.++++++.++. +|..+. ++++.|++++|++++..+..|..+++|+.|++++|++++..|..+.+
T Consensus 14 ~~v~c~~~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 567777777743 444433 57888888888888766777888888888888888887655655432
Q ss_pred cceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhcc
Q 005619 439 GFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDL 518 (688)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 518 (688)
+++|+.|+|++|++++..+..|..+
T Consensus 79 -------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 79 -------------------------------------------------------LRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp -------------------------------------------------------CSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred -------------------------------------------------------CcCCCEEECCCCcCCccCHhHccCC
Confidence 5678888888888887777778999
Q ss_pred CCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 519 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 519 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.|.|+.
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 9999999999999999999999999999999999999998888899999999999999999998753
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6e-20 Score=176.59 Aligned_cols=185 Identities=22% Similarity=0.253 Sum_probs=139.8
Q ss_pred ccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 358 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
.+.++.+++.+ +.+|..+. ++|+.|++++|.+++..|..+..+++|+.|++++|++++..+..+..
T Consensus 21 ~~~v~c~~~~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------- 86 (229)
T 3e6j_A 21 GTTVDCRSKRH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------- 86 (229)
T ss_dssp TTEEECTTSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEeEccCCCc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-----------
Confidence 45677777776 34454332 67888888888888777778888888888888888886333322221
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
+++|+.|+|++|++++..+..|..
T Consensus 87 --------------------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~ 110 (229)
T 3e6j_A 87 --------------------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDR 110 (229)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CCCcCEEECCCCcCCccChhHhCc
Confidence 567888888888888777888899
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCCCcccCCcCc---
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDE--- 594 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~~~~~--- 594 (688)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|++|++++|++.|.|+....+..|..
T Consensus 111 l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~l~~~~~~~~ 189 (229)
T 3e6j_A 111 LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDIMYLRNWVADHT 189 (229)
T ss_dssp CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGGHHHHHHHHHCG
T ss_pred chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchhHHHHHHHHhCc
Confidence 999999999999999 7888999999999999999999988888899999999999999999999875433332221
Q ss_pred ---cccCCCCCCCCCCCCCCCCCc
Q 005619 595 ---SSYRGNLHLCGPPINKSCTNL 615 (688)
Q Consensus 595 ---~~~~~n~~l~~~p~~~~C~~~ 615 (688)
..+.|++ +..+....|..+
T Consensus 190 ~~~~~~~g~~--v~~~~~~~C~~~ 211 (229)
T 3e6j_A 190 SIAMRWDGKA--VNDPDSAKCAGT 211 (229)
T ss_dssp GGEEEESSSE--EECTTCSBBTTT
T ss_pred cccccccCcc--cCCCCcCccCCC
Confidence 1223332 345556677654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=185.55 Aligned_cols=240 Identities=17% Similarity=0.143 Sum_probs=148.9
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCE-EEc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEW-LQL 220 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~-L~L 220 (688)
++++.++++++ .+|..+ .+++++|++++|+++.+.+.+|.++++|++|+|++|.+.+.++...|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666777776 667654 2467777777777775544567777777777777777655666666666665554 334
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccc-cccCC
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK-NLLEG 299 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~ 299 (688)
.+|+++...+..|..+++|++|++++|.+....+ ..+....++..+++.+ +.+..
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~------------------------~~~~~~~~l~~l~l~~~~~i~~ 143 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPD------------------------VHKIHSLQKVLLDIQDNINIHT 143 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCC------------------------CTTCCBSSCEEEEEESCTTCCE
T ss_pred cCCcccccCchhhhhccccccccccccccccCCc------------------------hhhcccchhhhhhhcccccccc
Confidence 4455555445555555555555555555543333 3333334444555533 33443
Q ss_pred CCcccccCCC-CCcEEEccCCcCccccccccccCccceEeeec-CccccCCc-hhccCCCCccEEeCcCCcCCCcCchhh
Q 005619 300 NIPVQFNNLA-ILQILDISENNLSGSMISTLNLSSVEHLYLQS-NALGGSIP-NTIFRGSALETLDLRDNYFFGRIPHQI 376 (688)
Q Consensus 300 ~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~ 376 (688)
..+..|..+. .++.|++++|+++...+..+...+|+++++.+ |.++ .+| ..|..+++|++|++++|+++...+..+
T Consensus 144 l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 144 IERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred ccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 3344454443 56777788887777766666667788888875 5555 554 456778889999999998866544444
Q ss_pred hcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 377 NEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 377 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
.+|+.|.+.++.--..+| .+..+++|+.++++++
T Consensus 223 ---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 223 ---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp ---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred ---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 456666655554444566 3778899999998754
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=196.27 Aligned_cols=114 Identities=22% Similarity=0.303 Sum_probs=56.6
Q ss_pred CCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcC
Q 005619 286 NLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD 365 (688)
Q Consensus 286 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~ 365 (688)
+++.|++++|.+++ +|..+ +++|++|++++|.++..+ ..+++|++|++++|.+++ +|. +.. +|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCC
Confidence 56666666666654 33333 245666666666555333 124455555555555553 443 322 455555555
Q ss_pred CcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 366 NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 366 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
|++++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|+++
T Consensus 130 N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 130 NQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp SCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred CcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 55544 332 34455555555555543 332 3445555555555544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=4.5e-19 Score=182.49 Aligned_cols=224 Identities=18% Similarity=0.126 Sum_probs=167.6
Q ss_pred CEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCccc-ccccCCCCCCE-EEc
Q 005619 191 RLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIK-DGLLRSSELMV-LDI 268 (688)
Q Consensus 191 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~-L~L 268 (688)
++++.+++.++ .+|..+ .+++++|+|++|+|+...+.+|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45666666666 666543 2467777777777776555667778888888888887755444 45677777765 566
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC-CcCcccccccc-cc-CccceEeeecCccc
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE-NNLSGSMISTL-NL-SSVEHLYLQSNALG 345 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~~~~~-~~-~~L~~L~L~~n~l~ 345 (688)
+.|+++...|..|..+++|++|++++|.+....+..+....++..+++.+ +.+.......+ .+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888877788899999999999999999877777777788899999976 56776666555 43 46899999999998
Q ss_pred cCCchhccCCCCccEEeCcC-CcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccch
Q 005619 346 GSIPNTIFRGSALETLDLRD-NYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422 (688)
Q Consensus 346 ~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 422 (688)
.++...+...+|+++++++ |.++...+..|..+++|+.|++++|+++...+.. +.+|+.|.+.++.--..+|.
T Consensus 168 -~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp -EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC
T ss_pred -CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC
Confidence 6666666778899999986 6665554567899999999999999999654444 45677777666544446663
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=4.9e-20 Score=190.49 Aligned_cols=180 Identities=24% Similarity=0.209 Sum_probs=142.8
Q ss_pred ceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhh-cCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccC
Q 005619 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQIN-EHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413 (688)
Q Consensus 335 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 413 (688)
+.++++++.++ .+|..+. +.++.|++++|++++..+..+. .+++|+.|+|++|++++..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46667777766 4565443 4578888888888777777776 888899999999988877777888889999999999
Q ss_pred CcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccc
Q 005619 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493 (688)
Q Consensus 414 n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (688)
|++++..+..+.+
T Consensus 98 N~l~~~~~~~~~~------------------------------------------------------------------- 110 (361)
T 2xot_A 98 NHLHTLDEFLFSD------------------------------------------------------------------- 110 (361)
T ss_dssp SCCCEECTTTTTT-------------------------------------------------------------------
T ss_pred CcCCcCCHHHhCC-------------------------------------------------------------------
Confidence 9887544433322
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccc---cCCCCCCeEeCCCCcccccCCcCCCCCCC--
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESF---SNLKMIESLDLSHNKLNGQIPPQLTELHS-- 568 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~-- 568 (688)
+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|++++..+..+..++.
T Consensus 111 l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~ 190 (361)
T 2xot_A 111 LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWV 190 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHH
T ss_pred CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhh
Confidence 5678889999999998888999999999999999999996555555 67899999999999999776677888877
Q ss_pred CCEEecCCCcCccCCC
Q 005619 569 LSKFDVSYNDLSGPIP 584 (688)
Q Consensus 569 L~~L~ls~N~l~~~~p 584 (688)
++.|++++|++.|.|.
T Consensus 191 l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 191 KNGLYLHNNPLECDCK 206 (361)
T ss_dssp HTTEECCSSCEECCHH
T ss_pred cceEEecCCCccCCcC
Confidence 4889999999998875
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=165.00 Aligned_cols=161 Identities=20% Similarity=0.195 Sum_probs=95.2
Q ss_pred CcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEE
Q 005619 140 GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQ 219 (688)
Q Consensus 140 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~ 219 (688)
+|++|++++|+++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccC-cCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 4555555555554 344433345666666666666666554455566666666666666665 44444455666666666
Q ss_pred cccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCC
Q 005619 220 LSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEG 299 (688)
Q Consensus 220 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 299 (688)
+++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++|
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 66666665555555666666666666666665555555666666666666665542 34456666666666666
Q ss_pred CCcccccCCC
Q 005619 300 NIPVQFNNLA 309 (688)
Q Consensus 300 ~~~~~l~~l~ 309 (688)
.+|..++.++
T Consensus 180 ~ip~~~~~l~ 189 (208)
T 2o6s_A 180 VVRNSAGSVA 189 (208)
T ss_dssp TBBCTTSSBC
T ss_pred eeeccCcccc
Confidence 6666555544
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=165.39 Aligned_cols=138 Identities=20% Similarity=0.180 Sum_probs=68.7
Q ss_pred CCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEE
Q 005619 212 CFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 212 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 291 (688)
+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 130 (208)
T 2o6s_A 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR 130 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence 33333333333333333233334444444444444444433333344455555555555555544444455555555555
Q ss_pred ccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCC
Q 005619 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG 355 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 355 (688)
+++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|.++|.+|..++.+
T Consensus 131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred CCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCceeeccCccc
Confidence 55555554444445555666666666654443 23455566666666666665554443
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=173.42 Aligned_cols=171 Identities=23% Similarity=0.342 Sum_probs=111.5
Q ss_pred ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 330 NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 330 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
.+++|++|++++|.+. .++ .+..+++|++|++++|++++..+ +..+++|+.|++++|++++ ++ .+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 3445555555555554 222 35556666777777766655433 6666777777777777664 22 36677777777
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|++++. + .+.
T Consensus 118 ~L~~n~i~~~-~-~l~---------------------------------------------------------------- 131 (291)
T 1h6t_A 118 SLEHNGISDI-N-GLV---------------------------------------------------------------- 131 (291)
T ss_dssp ECTTSCCCCC-G-GGG----------------------------------------------------------------
T ss_pred ECCCCcCCCC-h-hhc----------------------------------------------------------------
Confidence 7777776531 1 111
Q ss_pred cccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCC
Q 005619 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 569 (688)
.+++|+.|++++|++++. ..+..+++|+.|+|++|++++..| ++.+++|+.|++++|++++. | .+..+++|
T Consensus 132 ---~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L 202 (291)
T 1h6t_A 132 ---HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNL 202 (291)
T ss_dssp ---GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTC
T ss_pred ---CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCC
Confidence 145677777777777754 567777788888888888876544 77778888888888887754 3 37777888
Q ss_pred CEEecCCCcCcc
Q 005619 570 SKFDVSYNDLSG 581 (688)
Q Consensus 570 ~~L~ls~N~l~~ 581 (688)
+.|++++|+++.
T Consensus 203 ~~L~l~~n~i~~ 214 (291)
T 1h6t_A 203 DVLELFSQECLN 214 (291)
T ss_dssp SEEEEEEEEEEC
T ss_pred CEEECcCCcccC
Confidence 888888887765
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=186.37 Aligned_cols=188 Identities=22% Similarity=0.274 Sum_probs=107.4
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
+++.|++++|.+++ +|... .++|+.|++++|.++. +| ..+++|++|++++|.+++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l---~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL---PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC---CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH---cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 66666666666653 55433 2456666666665552 22 234455555555555553 333 322 4555555
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCC
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSI 348 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 348 (688)
++|.+++ +|. .+++|+.|++++|.+++.+. .+++|++|++++|.+++ +
T Consensus 128 s~N~l~~-lp~---------------------------~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-l 175 (571)
T 3cvr_A 128 DNNQLTM-LPE---------------------------LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-L 175 (571)
T ss_dssp CSSCCSC-CCC---------------------------CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-C
T ss_pred CCCcCCC-CCC---------------------------cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-c
Confidence 5554443 222 34455555555555554322 34555666666666553 4
Q ss_pred chhccCCCCccEEeCcCCcCCCcCchhhhcCCCc-------cEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccc
Q 005619 349 PNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL-------RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421 (688)
Q Consensus 349 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 421 (688)
|. +. ++|+.|++++|+++ .+|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|
T Consensus 176 p~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 176 PE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp CC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred ch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence 44 33 56677777777665 3444 333 55 88888888887 467767778888888888888888888
Q ss_pred hhhhhhh
Q 005619 422 ACITNLL 428 (688)
Q Consensus 422 ~~l~~l~ 428 (688)
..+.++.
T Consensus 248 ~~l~~l~ 254 (571)
T 3cvr_A 248 ESLSQQT 254 (571)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8877654
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-18 Score=165.28 Aligned_cols=156 Identities=21% Similarity=0.215 Sum_probs=129.4
Q ss_pred ceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccC
Q 005619 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSH 413 (688)
Q Consensus 335 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 413 (688)
+++++++|.++ .+|..+. ..+++|++++|++++..+ ..|..+++|+.|++++|++++..+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46777777776 4565443 356888888888877644 4578889999999999999887777899999999999999
Q ss_pred CcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccc
Q 005619 414 NRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVI 493 (688)
Q Consensus 414 n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (688)
|++++..|..+..
T Consensus 91 N~l~~~~~~~~~~------------------------------------------------------------------- 103 (220)
T 2v70_A 91 NRLENVQHKMFKG------------------------------------------------------------------- 103 (220)
T ss_dssp SCCCCCCGGGGTT-------------------------------------------------------------------
T ss_pred CccCccCHhHhcC-------------------------------------------------------------------
Confidence 9998665554432
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|.+.+..+
T Consensus 104 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 104 LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 5678999999999998889999999999999999999999889999999999999999999987543
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=162.37 Aligned_cols=115 Identities=23% Similarity=0.344 Sum_probs=95.4
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
++.|+.|+|++|++++..|..|..+++|+.|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (192)
T 1w8a_A 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence 56788899999999988899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCcCccCCCCCcccCCcCccccCCCCCCCCCCC
Q 005619 574 VSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPI 608 (688)
Q Consensus 574 ls~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p~ 608 (688)
+++|+++|.++.......+....+.++...|+.|.
T Consensus 133 L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 133 LASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSST
T ss_pred eCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCCh
Confidence 99999999987532222222233444545565543
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-18 Score=163.87 Aligned_cols=154 Identities=22% Similarity=0.248 Sum_probs=128.3
Q ss_pred ceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 335 EHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 335 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
+.++++++.++ .+|..+. ++++.|++++|++.+..+..|..+++|+.|+|++|++++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45666677766 5565443 57889999999988777778888999999999999998888889999999999999999
Q ss_pred cCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccc
Q 005619 415 RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494 (688)
Q Consensus 415 ~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (688)
++++..+..+.. +
T Consensus 91 ~l~~l~~~~f~~-------------------------------------------------------------------l 103 (220)
T 2v9t_B 91 KITELPKSLFEG-------------------------------------------------------------------L 103 (220)
T ss_dssp CCCCCCTTTTTT-------------------------------------------------------------------C
T ss_pred cCCccCHhHccC-------------------------------------------------------------------C
Confidence 988433322221 5
Q ss_pred ccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccccc
Q 005619 495 DYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
++|+.|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 6789999999999999899999999999999999999988888899999999999999999853
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.76 E-value=7.1e-18 Score=168.44 Aligned_cols=147 Identities=25% Similarity=0.379 Sum_probs=66.2
Q ss_pred CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEE
Q 005619 163 LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242 (688)
Q Consensus 163 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L 242 (688)
+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|++++|.+++. +.+..+++|+.|
T Consensus 67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L 139 (291)
T 1h6t_A 67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESL 139 (291)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEE
T ss_pred CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEECCCCcCCCC--hhhcCCCCCCEE
Confidence 4444444444444443222 444444444444444444 2221 33444444444444444431 234444445555
Q ss_pred eccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 243 ~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
++++|.+++. ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 5554444432 234444555555555555543322 44455555555555554432 1 2444455555555555444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.75 E-value=8.8e-18 Score=183.86 Aligned_cols=166 Identities=22% Similarity=0.261 Sum_probs=81.7
Q ss_pred CCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC
Q 005619 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318 (688)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 318 (688)
+..+.+..+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcC
Confidence 3334444444443222 33455666666666666532 2 35556666666666666654333 55566666666666
Q ss_pred CcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCch
Q 005619 319 NNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH 398 (688)
Q Consensus 319 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 398 (688)
|.+.+.. ....+++|++|+|++|.+.+ + +.+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..|
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCCCh-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 6555422 22244555555555555542 2 2344444555555555544332 334444455555555554443333
Q ss_pred hhcCCCCCCEEEccCCcCc
Q 005619 399 QLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 399 ~~~~l~~L~~L~ls~n~l~ 417 (688)
+..+++|+.|+|++|+++
T Consensus 171 -l~~l~~L~~L~Ls~N~i~ 188 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHIS 188 (605)
T ss_dssp -GTTCTTCCEEECCSSCCC
T ss_pred -hccCCCCCEEECcCCCCC
Confidence 444444455555444444
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-17 Score=160.14 Aligned_cols=157 Identities=25% Similarity=0.261 Sum_probs=129.5
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEcc
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLS 412 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls 412 (688)
+-+.++.+++.++ .+|..+. ++|++|++++|++++..|..+..+++|+.|+|++|++.+..+..|..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3456777777776 5665443 789999999999988888888899999999999999987666778889999999999
Q ss_pred CCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccc
Q 005619 413 HNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGV 492 (688)
Q Consensus 413 ~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (688)
+|++++..+..+..
T Consensus 97 ~N~l~~l~~~~~~~------------------------------------------------------------------ 110 (229)
T 3e6j_A 97 TNQLTVLPSAVFDR------------------------------------------------------------------ 110 (229)
T ss_dssp SSCCCCCCTTTTTT------------------------------------------------------------------
T ss_pred CCcCCccChhHhCc------------------------------------------------------------------
Confidence 99988544433322
Q ss_pred ccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 493 ILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 493 ~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+++|+.|+|++|+++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+..+
T Consensus 111 -l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 111 -LVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp -CTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred -chhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 567899999999998 778889999999999999999998777889999999999999999987543
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.2e-18 Score=158.54 Aligned_cols=154 Identities=15% Similarity=0.226 Sum_probs=109.2
Q ss_pred cCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhccc
Q 005619 353 FRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKV 432 (688)
Q Consensus 353 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~ 432 (688)
..+++|+.|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|++++..|..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 34456777777777765 334 5667777777777777654 2335677778888888888776544443322
Q ss_pred CCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCC
Q 005619 433 GSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIP 512 (688)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p 512 (688)
+++|+.|++++|++++..|
T Consensus 111 -------------------------------------------------------------l~~L~~L~Ls~n~i~~~~~ 129 (197)
T 4ezg_A 111 -------------------------------------------------------------LTSLTLLDISHSAHDDSIL 129 (197)
T ss_dssp -------------------------------------------------------------CTTCCEEECCSSBCBGGGH
T ss_pred -------------------------------------------------------------CCCCCEEEecCCccCcHhH
Confidence 4667788888888887777
Q ss_pred hhhhccCCCCeeeCCCCc-CccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCcc
Q 005619 513 SEICDLQNIHGLNLSHNF-LSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 581 (688)
..++.+++|+.|+|++|. ++ .+| .++.+++|+.|++++|++++. + .+..+++|++|++++|++.+
T Consensus 130 ~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 130 TKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp HHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC----
T ss_pred HHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccCC
Confidence 888888888888888887 55 455 588888888888888888863 3 67888889999998888754
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-20 Score=203.55 Aligned_cols=61 Identities=23% Similarity=0.283 Sum_probs=29.0
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCC-CccccCCCCCCeEeCCCCccccc
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
+|+.|+|++|++++ +| .++.+++|+.|+|++|+|++.+ |..++.+++|+.|+|++|++++.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 34444444444443 23 4444455555555555554443 44455555555555555555443
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=180.49 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=89.9
Q ss_pred CCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccC
Q 005619 94 LKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173 (688)
Q Consensus 94 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (688)
+..++++.+.+.+..+. ..+++|+.|++++|.+..++....+++|+.|+|++|.+++ ++. + ..+++|+.|+|++
T Consensus 23 l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~-~~~-l-~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTD-IKP-L-TNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCC-CGG-G-GGCTTCCEEECCS
T ss_pred HHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCC-Chh-h-ccCCCCCEEECcC
Confidence 44455666666643332 3566777777777776665433455555555555555552 222 2 2455555555555
Q ss_pred CCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcc
Q 005619 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKI 253 (688)
Q Consensus 174 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 253 (688)
|.+.+. +.+..+++|++|+|++|.+.+ ++ .+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~ 169 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISD-IN--GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 169 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCC-CG--GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCC-Cc--cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch
Confidence 555431 234555555555555555442 21 133444455555554444432 33444444444444444444332
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccC
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 298 (688)
+ +..+++|+.|+|++|.+++. ..+..+++|+.|++++|.+.
T Consensus 170 ~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 170 P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 2 34444444444444444422 12334444444444444433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.8e-18 Score=165.76 Aligned_cols=171 Identities=20% Similarity=0.269 Sum_probs=131.1
Q ss_pred ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 330 NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 330 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
.+.+++.++++++.+++ ++ .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|++++..+ +..+++|+.|
T Consensus 17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 35566677777777763 33 45667788888888888754 34 67788888888888888886544 7888888888
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|++++ +|..
T Consensus 91 ~L~~N~l~~-l~~~------------------------------------------------------------------ 103 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI------------------------------------------------------------------ 103 (263)
T ss_dssp ECCSSCCSC-CTTC------------------------------------------------------------------
T ss_pred ECCCCccCC-cCcc------------------------------------------------------------------
Confidence 888888864 2210
Q ss_pred cccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCC
Q 005619 490 KGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSL 569 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 569 (688)
. .+.|+.|++++|++++. +.+..+++|+.|+|++|++++. | .++.+++|+.|+|++|++++. ..+..+++|
T Consensus 104 --~-~~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 104 --P-SACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp --C-CSSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred --c-cCcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 0 14678889999988864 3588899999999999999864 3 688889999999999999876 678889999
Q ss_pred CEEecCCCcCccC
Q 005619 570 SKFDVSYNDLSGP 582 (688)
Q Consensus 570 ~~L~ls~N~l~~~ 582 (688)
++|++++|++++.
T Consensus 175 ~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 175 NWIDLTGQKCVNE 187 (263)
T ss_dssp CEEEEEEEEEECC
T ss_pred CEEeCCCCcccCC
Confidence 9999999998875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-20 Score=201.09 Aligned_cols=204 Identities=19% Similarity=0.195 Sum_probs=155.4
Q ss_pred cCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccc-------------cCCCCcccccCCCCCcEEE-ccCCcCcc
Q 005619 258 LRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL-------------LEGNIPVQFNNLAILQILD-ISENNLSG 323 (688)
Q Consensus 258 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~l~~l~~L~~L~-Ls~n~l~~ 323 (688)
..+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 44667777777777776 567777777777777776553 3445566666777777776 555432
Q ss_pred ccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCC
Q 005619 324 SMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQL 403 (688)
Q Consensus 324 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 403 (688)
..|+.+.+++|.++. ++. ..|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+
T Consensus 423 --------~~L~~l~l~~n~i~~-l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLK-MEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHH-HHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------chhhhhhhhcccccc-cCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 345566666666653 222 258999999999976 565 999999999999999999 788899999
Q ss_pred CCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeec
Q 005619 404 RKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTK 483 (688)
Q Consensus 404 ~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 483 (688)
++|+.|++++|++++ +| .+.+
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~--------------------------------------------------------- 506 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVAN--------------------------------------------------------- 506 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTT---------------------------------------------------------
T ss_pred CCCCEEECCCCCCCC-Cc-ccCC---------------------------------------------------------
Confidence 999999999999985 55 3332
Q ss_pred cccccccccccccccEEEccCCcccccC-ChhhhccCCCCeeeCCCCcCccCCCcc---ccCCCCCCeEeC
Q 005619 484 NRYESYKGVILDYMAGLDLSSNKLTGDI-PSEICDLQNIHGLNLSHNFLSGSIPES---FSNLKMIESLDL 550 (688)
Q Consensus 484 ~~~~~~~~~~l~~L~~LdLs~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~L 550 (688)
+++|+.|+|++|++++.. |..|+.+++|+.|+|++|.+++.+|.. +..+++|+.||+
T Consensus 507 ----------l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 507 ----------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ----------CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ----------CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 678999999999999887 999999999999999999999776532 344788888875
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2e-17 Score=170.85 Aligned_cols=176 Identities=21% Similarity=0.232 Sum_probs=91.1
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhh-cCCCCCEEEccCCcCccccCchhhcCCCCCCEEEc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG-KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQL 220 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 220 (688)
+.+++++++++ .+|..+. +.++.|++++|.+++..+..+. .+++|++|++++|.+. .++...+..+++|++|+|
T Consensus 21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEEC
Confidence 34555555555 4554332 3455566666655554444444 5555666666655555 444444455555555555
Q ss_pred ccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhh---hCCcCCcEEEcccccc
Q 005619 221 SNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWM---GNFSNLYILSMSKNLL 297 (688)
Q Consensus 221 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~l~~n~l 297 (688)
++|.++...+..|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+++..+..+ ..+++|+.|++++|.+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l 175 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL 175 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC
Confidence 5555554444455555555555555555555445555555555555555555554333333 3355555555555555
Q ss_pred CCCCcccccCCCC--CcEEEccCCcCc
Q 005619 298 EGNIPVQFNNLAI--LQILDISENNLS 322 (688)
Q Consensus 298 ~~~~~~~l~~l~~--L~~L~Ls~n~l~ 322 (688)
++..+..+..++. ++.|++++|.+.
T Consensus 176 ~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 176 KKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CccCHHHhhhccHhhcceEEecCCCcc
Confidence 5444444444443 244555555443
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.3e-17 Score=153.61 Aligned_cols=153 Identities=21% Similarity=0.283 Sum_probs=102.2
Q ss_pred ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEE
Q 005619 330 NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409 (688)
Q Consensus 330 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 409 (688)
.+++|++|++++|.++ .+| .+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3455666666666665 444 45666667777777775532 2356677777777777777776666677777777777
Q ss_pred EccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccc
Q 005619 410 DLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESY 489 (688)
Q Consensus 410 ~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (688)
++++|++++..|..+..
T Consensus 118 ~Ls~n~i~~~~~~~l~~--------------------------------------------------------------- 134 (197)
T 4ezg_A 118 DISHSAHDDSILTKINT--------------------------------------------------------------- 134 (197)
T ss_dssp ECCSSBCBGGGHHHHTT---------------------------------------------------------------
T ss_pred EecCCccCcHhHHHHhh---------------------------------------------------------------
Confidence 77777777655554432
Q ss_pred cccccccccEEEccCCc-ccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccc
Q 005619 490 KGVILDYMAGLDLSSNK-LTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 490 ~~~~l~~L~~LdLs~N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
++.|+.|++++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++.+
T Consensus 135 ----l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 135 ----LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp ----CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred ----CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 4567777777777 44 444 57788888888888888885 33 67788888888888888764
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.71 E-value=4e-18 Score=173.85 Aligned_cols=288 Identities=14% Similarity=0.078 Sum_probs=141.2
Q ss_pred CCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCC-CCCCcCEEEccCCCCCCCCChhhhhc-------
Q 005619 91 QFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTS-AQHGLISLDISSNNFTGKLPQNMGIV------- 162 (688)
Q Consensus 91 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~L~~L~ls~n~~~~~~~~~~~~~------- 162 (688)
+.++++|.++++ +...-...+...+++|+.|||++|++....... ..+.++.+.+..| .+|...|..
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 446777777764 221111122222677888888888777322211 2222344444444 455555555
Q ss_pred -CCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc----CCCcCcccccCCC
Q 005619 163 -LPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN----FDGQIFPNYVNLT 237 (688)
Q Consensus 163 -l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~----i~~~~~~~~~~l~ 237 (688)
+++|+++++.+ .++.+.+.+|.++++|+.+++++|.+. .++..+|..+.++..+....+. ........|.++.
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 67777777766 666555566666777777777666665 5666666665555555444321 1111222333444
Q ss_pred CCC-EEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEc
Q 005619 238 RLL-FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDI 316 (688)
Q Consensus 238 ~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 316 (688)
.|+ .+.+.... .++..+. .......+++.+.+.++-...........+++|+.+++
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~--------------------~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIM--------------------KAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHH--------------------HTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred ccceeEEecCCC---cHHHHHh--------------------hcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence 444 22222111 0111000 00001223333333322110000000112445555555
Q ss_pred cCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCcc-EEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCC
Q 005619 317 SENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALE-TLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQG 394 (688)
Q Consensus 317 s~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 394 (688)
++|.++......| ++++|+.+++.+| ++...+..|..|++|+ .+++.+ .++...+.+|.+|++|+.+++++|+++.
T Consensus 234 ~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~ 311 (329)
T 3sb4_A 234 SKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT 311 (329)
T ss_dssp TTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred CCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence 5555554444444 4555555555554 4434444555666666 666665 4544555666666666666666666665
Q ss_pred CCchhhcCCCCCCEEE
Q 005619 395 PIPHQLCQLRKLSIMD 410 (688)
Q Consensus 395 ~~~~~~~~l~~L~~L~ 410 (688)
+.+.+|.+|++|+.++
T Consensus 312 I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 312 LGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTCTTCCCCEEE
T ss_pred cchhhhcCCcchhhhc
Confidence 5566666666666664
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=153.33 Aligned_cols=92 Identities=23% Similarity=0.262 Sum_probs=84.1
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|..|+++++|+.|+|++|++++..+..|..+++|++|+
T Consensus 53 l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 46788888888888888888899999999999999999998888999999999999999999988777899999999999
Q ss_pred cCCCcCccCCCC
Q 005619 574 VSYNDLSGPIPD 585 (688)
Q Consensus 574 ls~N~l~~~~p~ 585 (688)
+++|++.|.|+.
T Consensus 133 L~~N~~~C~c~l 144 (193)
T 2wfh_A 133 IGANPLYCDCNM 144 (193)
T ss_dssp CCSSCEECSGGG
T ss_pred eCCCCeecCCcC
Confidence 999999998853
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.7e-17 Score=154.63 Aligned_cols=156 Identities=25% Similarity=0.291 Sum_probs=104.6
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCch-hhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPH-QLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
+.+++++|.+ +.+|..+. .++++|++++|++++..+. .+..+++|++|++++|++++..|..+.+
T Consensus 11 ~~l~~s~~~l-~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----------- 76 (192)
T 1w8a_A 11 TTVDCTGRGL-KEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG----------- 76 (192)
T ss_dssp TEEECTTSCC-SSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred CEEEcCCCCc-CcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-----------
Confidence 5666776666 34444333 2677777777777655543 3677777777777777777655554432
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
+++|+.|+|++|++++..|..|..
T Consensus 77 --------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~ 100 (192)
T 1w8a_A 77 --------------------------------------------------------ASHIQELQLGENKIKEISNKMFLG 100 (192)
T ss_dssp --------------------------------------------------------CTTCCEEECCSCCCCEECSSSSTT
T ss_pred --------------------------------------------------------cccCCEEECCCCcCCccCHHHhcC
Confidence 456777788888887777777888
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
+++|+.|+|++|++++.+|..|+.+++|++|+|++|.+++..+... -...++...+..+...|..|.
T Consensus 101 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 101 LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred CCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh
Confidence 8888888888888888888888888888888888888887654210 001122223445556665554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-17 Score=186.93 Aligned_cols=133 Identities=20% Similarity=0.265 Sum_probs=105.4
Q ss_pred EccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCC
Q 005619 291 SMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370 (688)
Q Consensus 291 ~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~ 370 (688)
++..|.+. ..+..+..++.|+.|+|++|.+.......+.+++|++|+|++|.++ .+|..+..+++|++|+|++|+++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 33445444 5577788889999999999998876666668899999999999998 88888999999999999999997
Q ss_pred cCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhh
Q 005619 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNL 427 (688)
Q Consensus 371 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l 427 (688)
.+|..++.+++|++|+|++|.++ .+|..|..+++|+.|+|++|++++.+|..+...
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 67889999999999999999997 678889999999999999999999888877653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-17 Score=166.06 Aligned_cols=56 Identities=14% Similarity=0.019 Sum_probs=40.4
Q ss_pred ccccc-EEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeC
Q 005619 494 LDYMA-GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDL 550 (688)
Q Consensus 494 l~~L~-~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 550 (688)
+..|+ .+++.+ +++.+.+.+|.++++|+.|++++|+++.+.+.+|.++++|+.+..
T Consensus 272 ~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 272 CGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred ChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 34555 666665 555566677888888888888888888777778888888887753
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.5e-17 Score=186.97 Aligned_cols=191 Identities=22% Similarity=0.200 Sum_probs=122.9
Q ss_pred EccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC
Q 005619 315 DISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ 393 (688)
Q Consensus 315 ~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 393 (688)
+++.|.+. ..+..+ .++.|+.|+|++|.+. .+|..++.+++|++|+|++|.++ .+|..++.+++|+.|+|++|+++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33444444 233334 7889999999999998 78888889999999999999997 78888999999999999999999
Q ss_pred CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCC
Q 005619 394 GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473 (688)
Q Consensus 394 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 473 (688)
.+|..+..+++|++|+|++|.++ .+|..+.+
T Consensus 284 -~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~----------------------------------------------- 314 (727)
T 4b8c_D 284 -SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN----------------------------------------------- 314 (727)
T ss_dssp -SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS-----------------------------------------------
T ss_pred -ccChhhcCCCCCCEEECCCCCCC-ccChhhhc-----------------------------------------------
Confidence 77989999999999999999996 66765533
Q ss_pred cceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCC-CCeeeCCCCcCccCCCccccCCCCCCeEeCCC
Q 005619 474 TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQN-IHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552 (688)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~-L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 552 (688)
+++|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++
T Consensus 315 --------------------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~ 368 (727)
T 4b8c_D 315 --------------------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINT 368 (727)
T ss_dssp --------------------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC--------------
T ss_pred --------------------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeec
Confidence 567899999999999999988876532 235889999999888864 55677777
Q ss_pred C--------cccccCCcCCCCCCCCCEEecCCCcCccCC
Q 005619 553 N--------KLNGQIPPQLTELHSLSKFDVSYNDLSGPI 583 (688)
Q Consensus 553 N--------~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 583 (688)
| .+.+..+..+..+..+....+++|-+.+..
T Consensus 369 n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~~ 407 (727)
T 4b8c_D 369 DGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQHY 407 (727)
T ss_dssp ---------------------------------CCCGGG
T ss_pred ccccccccCCccccccchhhcccccceeeeecccccccc
Confidence 7 455555556677777888889999886433
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.68 E-value=9.2e-17 Score=157.69 Aligned_cols=169 Identities=21% Similarity=0.282 Sum_probs=113.8
Q ss_pred CCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEc
Q 005619 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDI 316 (688)
Q Consensus 237 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 316 (688)
.++..++++.+.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence 34444555555554322 34455666666666666653 23 45666666666666666664433 666677777777
Q ss_pred cCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCC
Q 005619 317 SENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPI 396 (688)
Q Consensus 317 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 396 (688)
++|++++..... . ++|++|++++|.+++ ++ .+..+++|+.|++++|++++. + .+..+++|+.|++++|++++.
T Consensus 93 ~~N~l~~l~~~~-~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 93 NRNRLKNLNGIP-S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSSCCSCCTTCC-C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CCCccCCcCccc-c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 777666543322 2 677777777777774 33 477788888888888888664 3 678888889999999888865
Q ss_pred chhhcCCCCCCEEEccCCcCccc
Q 005619 397 PHQLCQLRKLSIMDLSHNRLNGS 419 (688)
Q Consensus 397 ~~~~~~l~~L~~L~ls~n~l~~~ 419 (688)
..+..+++|+.|++++|++++.
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHhccCCCCCEEeCCCCcccCC
Confidence 6678888899999999888754
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-15 Score=155.50 Aligned_cols=198 Identities=12% Similarity=0.127 Sum_probs=119.4
Q ss_pred CCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCC
Q 005619 137 AQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLE 216 (688)
Q Consensus 137 ~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~ 216 (688)
.|.+|+.++++.|.++ .++...+. +.+|+.+.+..+ ++.+...+|.++++|+.+++..+ +. .++..+|.+ .+|+
T Consensus 178 ~c~~L~~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~ 251 (401)
T 4fdw_A 178 YCYNLKKADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGIT 251 (401)
T ss_dssp TCTTCCEEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCS
T ss_pred CcccCCeeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCcc
Confidence 4455555555555555 55555553 456666666533 44455556666666666666553 33 455555555 5666
Q ss_pred EEEcccCcCCCcCcccccCCCCCCEEeccCCcCC-----CcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEE
Q 005619 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFS-----GKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291 (688)
Q Consensus 217 ~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 291 (688)
.+.+. +.++.....+|.++++|+.+++.++.+. .....+|..+++|+.+++.. .++.....+|.+|++|+.+.
T Consensus 252 ~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 252 TVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLT 329 (401)
T ss_dssp EEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEE
T ss_pred EEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEE
Confidence 66663 3344444556666666666666665543 34455667777777777763 35555566677777777777
Q ss_pred ccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-cc-CccceEeeecCcc
Q 005619 292 MSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NL-SSVEHLYLQSNAL 344 (688)
Q Consensus 292 l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~-~~L~~L~L~~n~l 344 (688)
+..+ ++.+...+|.++ +|+.+++++|.+.......+ ++ .+++.|++..+.+
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 7544 555556677777 77777777777666555555 44 3667777766544
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-15 Score=155.33 Aligned_cols=263 Identities=11% Similarity=0.132 Sum_probs=171.7
Q ss_pred CCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCC
Q 005619 17 LTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLK 95 (688)
Q Consensus 17 l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~ 95 (688)
+..++.+.+..+ ++ .++...|.++ +|+.+++..+ +..++..+|.++ +|+.+.+.. .+..++ .+|.+|++|+
T Consensus 112 ~~~l~~i~ip~~-i~--~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 112 LKGYNEIILPNS-VK--SIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp CSSCSEEECCTT-CC--EECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred cCCccEEEECCc-cC--EehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 455666666543 22 2444455554 5666666544 445555556653 466666664 455553 4566666666
Q ss_pred EEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCC--CCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccC
Q 005619 96 YLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQ--LTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173 (688)
Q Consensus 96 ~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (688)
.+++++|+++ .++...|. +.+|+.+.+..+ ++.+. ....+++|+.+++..+ ++ .++...|.. .+|+.+.+.
T Consensus 184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp- 256 (401)
T 4fdw_A 184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP- 256 (401)
T ss_dssp EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-
T ss_pred eeecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-
Confidence 6666666666 55555553 466666666533 33322 2225566677776653 44 566666654 678888884
Q ss_pred CCCCcccchhhhcCCCCCEEEccCCcCc----cccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcC
Q 005619 174 NSFEGNIPSSIGKMQGLRLLDVSSNKFA----GELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHF 249 (688)
Q Consensus 174 n~l~~~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 249 (688)
+.++.+...+|.++++|+.+++.++.+. ..++...|.+|++|+.+++.+ .++.....+|.++++|+.+.+..+ +
T Consensus 257 ~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l 334 (401)
T 4fdw_A 257 NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V 334 (401)
T ss_dssp TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C
T ss_pred CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c
Confidence 4566566777888888888888776553 147777788888888888884 466666778888888888888654 6
Q ss_pred CCcccccccCCCCCCEEEccCCcCCCCCchhhhCCc-CCcEEEcccccc
Q 005619 250 SGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFS-NLYILSMSKNLL 297 (688)
Q Consensus 250 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 297 (688)
+.....+|..+ +|+.+++++|......+..|..++ +++.|.+..+.+
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 65667778888 899999988887766666777774 678888877654
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.6e-16 Score=141.61 Aligned_cols=94 Identities=23% Similarity=0.235 Sum_probs=81.7
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
++.|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|++|+
T Consensus 51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence 45677788888888767777788999999999999999988888889999999999999999987777789999999999
Q ss_pred cCCCcCccCCCCCc
Q 005619 574 VSYNDLSGPIPDKE 587 (688)
Q Consensus 574 ls~N~l~~~~p~~~ 587 (688)
+++|++.|.+|...
T Consensus 131 l~~N~~~~~~~~l~ 144 (177)
T 2o6r_A 131 LHTNPWDCSCPRID 144 (177)
T ss_dssp CCSSCBCCCHHHHH
T ss_pred ecCCCeeccCccHH
Confidence 99999999887543
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6.4e-16 Score=140.80 Aligned_cols=88 Identities=26% Similarity=0.272 Sum_probs=59.2
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCC-CccccCCCCCCeEeCCCCcccccCC---cCCCCCCCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSI-PESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL 569 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 569 (688)
+++|+.|++++|++++.+|..+..+++|+.|+|++|.+++.. +..++.+++|+.|++++|++++..+ ..+..+++|
T Consensus 70 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 149 (168)
T 2ell_A 70 LPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQL 149 (168)
T ss_dssp CSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSC
T ss_pred CCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccC
Confidence 455666666666666556666666777777777777777532 2567777777777777777775544 366777777
Q ss_pred CEEecCCCcCcc
Q 005619 570 SKFDVSYNDLSG 581 (688)
Q Consensus 570 ~~L~ls~N~l~~ 581 (688)
++|++++|.+..
T Consensus 150 ~~L~l~~n~~~~ 161 (168)
T 2ell_A 150 TYLDGYDREDQE 161 (168)
T ss_dssp CEETTEETTSCB
T ss_pred cEecCCCCChhh
Confidence 777777776653
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.64 E-value=4.2e-16 Score=142.01 Aligned_cols=138 Identities=25% Similarity=0.242 Sum_probs=119.7
Q ss_pred CCCccEEeCcCCcCC-CcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccC
Q 005619 355 GSALETLDLRDNYFF-GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVG 433 (688)
Q Consensus 355 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~ 433 (688)
.++|++|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++.+|..+.+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------- 93 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEK------- 93 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHH-------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhh-------
Confidence 378999999999997 67888889999999999999999865 77899999999999999999777765543
Q ss_pred CcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccC-C
Q 005619 434 SRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI-P 512 (688)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~-p 512 (688)
+++|+.|++++|.+++.. +
T Consensus 94 ------------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 113 (168)
T 2ell_A 94 ------------------------------------------------------------LPNLTHLNLSGNKLKDISTL 113 (168)
T ss_dssp ------------------------------------------------------------CTTCCEEECBSSSCCSSGGG
T ss_pred ------------------------------------------------------------CCCCCEEeccCCccCcchhH
Confidence 568999999999999653 3
Q ss_pred hhhhccCCCCeeeCCCCcCccCCC---ccccCCCCCCeEeCCCCcccccCCcC
Q 005619 513 SEICDLQNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSHNKLNGQIPPQ 562 (688)
Q Consensus 513 ~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~N~l~~~~p~~ 562 (688)
..+..+++|+.|++++|.+++..+ ..+..+++|+.|++++|.+. .+|.+
T Consensus 114 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 114 EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 789999999999999999997665 58999999999999999988 44543
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.4e-15 Score=152.82 Aligned_cols=327 Identities=10% Similarity=0.073 Sum_probs=167.8
Q ss_pred HhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCC
Q 005619 38 CSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENN 116 (688)
Q Consensus 38 ~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 116 (688)
.+|.+|++|+.+.++.+ +..++..+|.+|.+|+.+++.++ +..++ ..+..+.+|+.+.+..+ ++ .+....|.++
T Consensus 65 ~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~~aF~~~ 139 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGVEAFKGC 139 (394)
T ss_dssp TTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECTTTTTTC
T ss_pred HHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecceeeecc
Confidence 34445555555554422 33344444555555555555432 33332 23444445555444432 22 2223333333
Q ss_pred CCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEcc
Q 005619 117 TKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVS 196 (688)
Q Consensus 117 ~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~ 196 (688)
..++..........+......+.+|+.+.+..+. . .++...+..+++|+.+.+..+ ++.+...+|.++..|+.+.+.
T Consensus 140 ~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 140 DFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp CCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccccCccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3222222222211111122345555555554332 2 455555556666666666554 343445556666666666665
Q ss_pred CCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCC
Q 005619 197 SNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGH 276 (688)
Q Consensus 197 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 276 (688)
.+... +.... ....+|+.+.+... ++......+.++..++.+.+..+... .....+..+..++.+......+.
T Consensus 217 ~~~~~--i~~~~-~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 217 NSLYY--LGDFA-LSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp TTCCE--ECTTT-TTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred CCceE--eehhh-cccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 54322 22222 23456666666533 22233445666666776666655332 44455666666666666554332
Q ss_pred CchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCC
Q 005619 277 IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRG 355 (688)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~ 355 (688)
...|..+.+|+.+.+..+ ++.+...+|.+|.+|+.+++..+ ++......| ++.+|+.+.+..+ ++.....+|.+|
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 234566677777776544 44455566777777777777543 555555555 6677777777655 443445567777
Q ss_pred CCccEEeCcCCcCCCcCchhhhcCCCccEE
Q 005619 356 SALETLDLRDNYFFGRIPHQINEHSNLRAL 385 (688)
Q Consensus 356 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 385 (688)
.+|+.+++..+ + ..+...|.++++|+.+
T Consensus 366 ~~L~~i~lp~~-~-~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 366 INLKKVELPKR-L-EQYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTCCEEEEEGG-G-GGGGGGBCTTCEEEEE
T ss_pred CCCCEEEECCC-C-EEhhheecCCCCCcEE
Confidence 77777777654 2 2234566677776654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-14 Score=152.15 Aligned_cols=316 Identities=11% Similarity=0.048 Sum_probs=172.5
Q ss_pred cccccccCCCCCcceeEEECCCCCCCCcc-hhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC
Q 005619 57 LLQVKIENCLPTFQLKVLSLPNCNLGVIP-NFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT 135 (688)
Q Consensus 57 ~~~~~~~~~~~l~~L~~L~l~~n~l~~lp-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 135 (688)
++.++..+|.++.+|+.+.+.. .++.|+ .+|.+|.+|+.+++..+ ++ .++...+.++.+|+.+.+..+ +.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p~~-l~----- 129 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLPLM-LK----- 129 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCCTT-CC-----
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-EccchhhcccccchhhcccCc-ee-----
Confidence 3556777899999999999975 477774 46788899999999765 55 666777778888887665433 11
Q ss_pred CCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCC
Q 005619 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSL 215 (688)
Q Consensus 136 ~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L 215 (688)
.+....+..+..+ ...... ........+|.++++|+.+.+..+. . .++...|..+.+|
T Consensus 130 ------------------~i~~~aF~~~~~~-~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L 187 (394)
T 4fs7_A 130 ------------------SIGVEAFKGCDFK-EITIPE-GVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKL 187 (394)
T ss_dssp ------------------EECTTTTTTCCCS-EEECCT-TCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTC
T ss_pred ------------------eecceeeeccccc-ccccCc-cccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCc
Confidence 1111122122111 111111 1111223345555555555554332 1 3444555555555
Q ss_pred CEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcccc
Q 005619 216 EWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295 (688)
Q Consensus 216 ~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n 295 (688)
+.+++..+ ++......|.++..|+.+.+..+... +.+.......|+.+.+... ++......+..+..++.+.+..+
T Consensus 188 ~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 188 KSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN 263 (394)
T ss_dssp CBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT
T ss_pred eEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCC
Confidence 55555443 33333444555555555555443221 1222233445666655432 22233444556666666666554
Q ss_pred ccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCch
Q 005619 296 LLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPH 374 (688)
Q Consensus 296 ~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 374 (688)
... .....|..+..++.+......+. ...+ .+.+|+.+.+..+ ++.....+|..|.+|+.+++.++ ++.....
T Consensus 264 ~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~ 337 (394)
T 4fs7_A 264 KLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKR 337 (394)
T ss_dssp TCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT
T ss_pred cce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHH
Confidence 332 44455666666666665544322 1222 5666666666543 33334455666677777777543 4444456
Q ss_pred hhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCC
Q 005619 375 QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHN 414 (688)
Q Consensus 375 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 414 (688)
+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+++..+
T Consensus 338 aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 338 SFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 6777777777777655 54455566777777777776543
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.62 E-value=3.6e-16 Score=139.27 Aligned_cols=82 Identities=26% Similarity=0.301 Sum_probs=54.3
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccC-CCccccCCCCCCeEeCCCCcccccCC---cCCCCCCCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQIP---PQLTELHSL 569 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L 569 (688)
++.|+.|++++|.+++.+|..+..+++|+.|++++|++++. .|..++.+++|++|++++|++++..+ ..+..+++|
T Consensus 63 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 63 LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 44566666666666655666666677777777777777653 33667777777777777777776555 456677777
Q ss_pred CEEecC
Q 005619 570 SKFDVS 575 (688)
Q Consensus 570 ~~L~ls 575 (688)
++||++
T Consensus 143 ~~L~l~ 148 (149)
T 2je0_A 143 TYLDGY 148 (149)
T ss_dssp CEETTB
T ss_pred ccccCC
Confidence 777765
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-15 Score=135.81 Aligned_cols=128 Identities=23% Similarity=0.256 Sum_probs=86.9
Q ss_pred CCccEEeCcCCcCC-CcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCC
Q 005619 356 SALETLDLRDNYFF-GRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGS 434 (688)
Q Consensus 356 ~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~ 434 (688)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+++.+|..+..
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-------- 86 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK-------- 86 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHH--------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhh--------
Confidence 45667777777665 45666666677777777777777654 55666777777777777776555544332
Q ss_pred cccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCccccc-CCh
Q 005619 435 RYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGD-IPS 513 (688)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~-~p~ 513 (688)
+++|+.|++++|.+++. .+.
T Consensus 87 -----------------------------------------------------------l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 87 -----------------------------------------------------------CPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp -----------------------------------------------------------CTTCCEEECTTSCCCSHHHHG
T ss_pred -----------------------------------------------------------CCCCCEEECCCCcCCChHHHH
Confidence 45677777777777653 346
Q ss_pred hhhccCCCCeeeCCCCcCccCCC---ccccCCCCCCeEeCCC
Q 005619 514 EICDLQNIHGLNLSHNFLSGSIP---ESFSNLKMIESLDLSH 552 (688)
Q Consensus 514 ~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~Ls~ 552 (688)
.++.+++|+.|++++|.+++..+ ..++.+++|+.||+++
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 67777888888888888876655 4677788888887763
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=138.66 Aligned_cols=97 Identities=23% Similarity=0.199 Sum_probs=88.8
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
.+.++.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|++++..+..|..+++|++|+
T Consensus 29 ~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 29 PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEE
Confidence 35688999999999999999999999999999999999988888899999999999999999988888899999999999
Q ss_pred cCCCcCccCCCCCcccC
Q 005619 574 VSYNDLSGPIPDKEQFS 590 (688)
Q Consensus 574 ls~N~l~~~~p~~~~~~ 590 (688)
+++|++.|.++...++.
T Consensus 109 L~~N~~~c~c~~l~~l~ 125 (170)
T 3g39_A 109 LLNNPWDCACSDILYLS 125 (170)
T ss_dssp CCSSCBCTTBGGGHHHH
T ss_pred eCCCCCCCCchhHHHHH
Confidence 99999999987554443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=9.6e-15 Score=135.86 Aligned_cols=129 Identities=24% Similarity=0.350 Sum_probs=101.0
Q ss_pred cEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccc
Q 005619 359 ETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLS 438 (688)
Q Consensus 359 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~ 438 (688)
+.+++++|.++ .+|..+. ++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|..+.+
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~------------ 76 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSN------------ 76 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT------------
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccC------------
Confidence 56777777774 3444332 57888888888887 56677888888888888888887554444432
Q ss_pred cceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhcc
Q 005619 439 GFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDL 518 (688)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l 518 (688)
++.|+.|+|++|++++..|..|..+
T Consensus 77 -------------------------------------------------------l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 77 -------------------------------------------------------MTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp -------------------------------------------------------CTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred -------------------------------------------------------CCCCCEEECCCCccCEeCHHHhCCC
Confidence 5678888888888888888889999
Q ss_pred CCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccccc
Q 005619 519 QNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQ 558 (688)
Q Consensus 519 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 558 (688)
++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+.
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 102 KSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp TTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 9999999999999977777899999999999999998853
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=132.84 Aligned_cols=133 Identities=22% Similarity=0.216 Sum_probs=99.6
Q ss_pred ccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCccc
Q 005619 358 LETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437 (688)
Q Consensus 358 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~ 437 (688)
.+.+++++|++.. +|..+ .++|+.|++++|++++..+..+..+++|++|++++|++++..+..+..
T Consensus 9 ~~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 74 (177)
T 2o6r_A 9 GTEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK----------- 74 (177)
T ss_dssp TTEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-----------
T ss_pred CCEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-----------
Confidence 4567777777643 34332 357788888888887666666777888888888888877433332221
Q ss_pred ccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhc
Q 005619 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICD 517 (688)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~ 517 (688)
++.|+.|++++|++++..+..|..
T Consensus 75 --------------------------------------------------------l~~L~~L~l~~N~l~~~~~~~~~~ 98 (177)
T 2o6r_A 75 --------------------------------------------------------LTKLTILYLHENKLQSLPNGVFDK 98 (177)
T ss_dssp --------------------------------------------------------CTTCCEEECCSSCCCCCCTTTTTT
T ss_pred --------------------------------------------------------CCccCEEECCCCCccccCHHHhhC
Confidence 567888888888888777777888
Q ss_pred cCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCC
Q 005619 518 LQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560 (688)
Q Consensus 518 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 560 (688)
+++|+.|+|++|++++..+..+..+++|+.|+|++|++++..|
T Consensus 99 l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 99 LTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999999999997777778889999999999999987654
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-16 Score=149.60 Aligned_cols=152 Identities=22% Similarity=0.278 Sum_probs=109.5
Q ss_pred CCccEEeCcCCcCCCcCch------hhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhh
Q 005619 356 SALETLDLRDNYFFGRIPH------QINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLF 429 (688)
Q Consensus 356 ~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 429 (688)
..++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|+.|++++|.++ .+|..+..
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~--- 91 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--- 91 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH---
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc---
Confidence 3445555555555444443 77888888888888888875 55 7777888888888888887 45543322
Q ss_pred cccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccc
Q 005619 430 WKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTG 509 (688)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~ 509 (688)
++.|+.|++++|++++
T Consensus 92 ----------------------------------------------------------------~~~L~~L~L~~N~l~~ 107 (198)
T 1ds9_A 92 ----------------------------------------------------------------ADTLEELWISYNQIAS 107 (198)
T ss_dssp ----------------------------------------------------------------HHHCSEEEEEEEECCC
T ss_pred ----------------------------------------------------------------CCcCCEEECcCCcCCc
Confidence 3567888888888886
Q ss_pred cCChhhhccCCCCeeeCCCCcCccCCC-ccccCCCCCCeEeCCCCcccccCCcC----------CCCCCCCCEEecCCCc
Q 005619 510 DIPSEICDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ----------LTELHSLSKFDVSYND 578 (688)
Q Consensus 510 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ls~N~ 578 (688)
+| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|++|| +|+
T Consensus 108 -l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 108 -LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp -HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred -CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 34 58888888888888888885433 46788888888888888888776653 77788888886 665
Q ss_pred Ccc
Q 005619 579 LSG 581 (688)
Q Consensus 579 l~~ 581 (688)
++.
T Consensus 184 i~~ 186 (198)
T 1ds9_A 184 VDV 186 (198)
T ss_dssp GTT
T ss_pred cCH
Confidence 543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=131.00 Aligned_cols=111 Identities=23% Similarity=0.187 Sum_probs=96.8
Q ss_pred eeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccC
Q 005619 480 FMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 480 ~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 559 (688)
....+.+..++....+.|+.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|+++++|+.|+|++|++++..
T Consensus 18 ~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~ 97 (174)
T 2r9u_A 18 NCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIP 97 (174)
T ss_dssp ECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred EeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeC
Confidence 34555566666666789999999999999999999999999999999999999877777899999999999999999877
Q ss_pred CcCCCCCCCCCEEecCCCcCccCCCCCcccC
Q 005619 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFS 590 (688)
Q Consensus 560 p~~l~~l~~L~~L~ls~N~l~~~~p~~~~~~ 590 (688)
+..|..+++|++|++++|++.|.++...++.
T Consensus 98 ~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~ 128 (174)
T 2r9u_A 98 RGAFDNLKSLTHIYLYNNPWDCECRDIMYLR 128 (174)
T ss_dssp TTTTTTCTTCSEEECCSSCBCTTBGGGHHHH
T ss_pred HHHhccccCCCEEEeCCCCcccccccHHHHH
Confidence 7779999999999999999999887544433
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=132.94 Aligned_cols=86 Identities=16% Similarity=0.171 Sum_probs=65.4
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCc--cccCCCCCCeEeCCCCcccccCCcC----CCCCC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPE--SFSNLKMIESLDLSHNKLNGQIPPQ----LTELH 567 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----l~~l~ 567 (688)
++.|+.|++++|.+++..+..|..+++|+.|+|++|+++ .+|. .++.+++|+.|++++|+++. +|.. +..++
T Consensus 63 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~ 140 (176)
T 1a9n_A 63 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVP 140 (176)
T ss_dssp CSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCT
T ss_pred CCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCC
Confidence 456777777777777665566688888888888888886 4554 77888888888888888874 4553 78888
Q ss_pred CCCEEecCCCcCcc
Q 005619 568 SLSKFDVSYNDLSG 581 (688)
Q Consensus 568 ~L~~L~ls~N~l~~ 581 (688)
+|++||+++|....
T Consensus 141 ~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 141 QVRVLDFQKVKLKE 154 (176)
T ss_dssp TCSEETTEECCHHH
T ss_pred ccceeCCCcCCHHH
Confidence 88888888887653
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.49 E-value=5.4e-14 Score=128.95 Aligned_cols=133 Identities=18% Similarity=0.178 Sum_probs=87.2
Q ss_pred ccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcc
Q 005619 352 IFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWK 431 (688)
Q Consensus 352 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~ 431 (688)
+..+++|+.|++++|++.. ++......++|+.|++++|.+++. ..+..+++|++|++++|.+++..|..+..
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQA----- 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHH-----
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhc-----
Confidence 4455667777777777653 343222333777777777777653 45677777777777777776433222222
Q ss_pred cCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccC
Q 005619 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDI 511 (688)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~ 511 (688)
+++|+.|++++|.++ .+
T Consensus 87 --------------------------------------------------------------l~~L~~L~L~~N~i~-~~ 103 (176)
T 1a9n_A 87 --------------------------------------------------------------LPDLTELILTNNSLV-EL 103 (176)
T ss_dssp --------------------------------------------------------------CTTCCEEECCSCCCC-CG
T ss_pred --------------------------------------------------------------CCCCCEEECCCCcCC-cc
Confidence 456777777777775 34
Q ss_pred Ch--hhhccCCCCeeeCCCCcCccCCCc----cccCCCCCCeEeCCCCccc
Q 005619 512 PS--EICDLQNIHGLNLSHNFLSGSIPE----SFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 512 p~--~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~N~l~ 556 (688)
|. .+..+++|+.|++++|.++ .+|. .++.+++|+.||+++|...
T Consensus 104 ~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 104 GDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 44 6777888888888888887 3454 3777888888888888765
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-15 Score=142.48 Aligned_cols=152 Identities=25% Similarity=0.238 Sum_probs=118.8
Q ss_pred CccceEeeecCccccCCch------hccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCC
Q 005619 332 SSVEHLYLQSNALGGSIPN------TIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRK 405 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~~~------~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 405 (688)
..++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444445555555444443 78888999999999999976 56 8888999999999999998 57777777899
Q ss_pred CCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccc
Q 005619 406 LSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNR 485 (688)
Q Consensus 406 L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 485 (688)
|+.|++++|++++ +| .+..
T Consensus 95 L~~L~L~~N~l~~-l~-~~~~----------------------------------------------------------- 113 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIEK----------------------------------------------------------- 113 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHHH-----------------------------------------------------------
T ss_pred CCEEECcCCcCCc-CC-cccc-----------------------------------------------------------
Confidence 9999999999985 34 3332
Q ss_pred cccccccccccccEEEccCCcccccCC-hhhhccCCCCeeeCCCCcCccCCCcc----------ccCCCCCCeEeCCCCc
Q 005619 486 YESYKGVILDYMAGLDLSSNKLTGDIP-SEICDLQNIHGLNLSHNFLSGSIPES----------FSNLKMIESLDLSHNK 554 (688)
Q Consensus 486 ~~~~~~~~l~~L~~LdLs~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~ 554 (688)
++.|+.|++++|.+++..+ ..+..+++|+.|++++|.+++.+|.. +..+++|+.|| +|.
T Consensus 114 --------l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~ 183 (198)
T 1ds9_A 114 --------LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMP 183 (198)
T ss_dssp --------HHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGG
T ss_pred --------CCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Ccc
Confidence 4678899999999986433 57889999999999999998776653 78899999997 677
Q ss_pred ccc
Q 005619 555 LNG 557 (688)
Q Consensus 555 l~~ 557 (688)
++.
T Consensus 184 i~~ 186 (198)
T 1ds9_A 184 VDV 186 (198)
T ss_dssp GTT
T ss_pred cCH
Confidence 663
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.42 E-value=7e-12 Score=130.92 Aligned_cols=132 Identities=13% Similarity=0.122 Sum_probs=65.6
Q ss_pred cccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccC
Q 005619 254 KDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLS 332 (688)
Q Consensus 254 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~ 332 (688)
..+|..+..|+.+.+..+.. ......|.+++.|+.+.+. +.++.+...+|.+|.+|+.+++..+ ++......| ++.
T Consensus 258 ~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 258 THAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred cceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence 33455555555555544322 2334455556666666664 2344344555666666666666543 444444444 566
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcC
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYL 392 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 392 (688)
+|+.+.+..+ ++.....+|.+|++|+.+++.++... ...+..+.+|+.+.+..+.+
T Consensus 335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 6666666543 44344456666777777777665431 13455566677666655544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-11 Score=129.23 Aligned_cols=318 Identities=10% Similarity=0.146 Sum_probs=175.8
Q ss_pred CcccchhhhcCC-CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc---CCCcCcccccCCCCCCEEeccCCcCCCc
Q 005619 177 EGNIPSSIGKMQ-GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN---FDGQIFPNYVNLTRLLFLYLDNNHFSGK 252 (688)
Q Consensus 177 ~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~---i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 252 (688)
+.+...+|.++. .|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++..
T Consensus 52 t~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 52 SKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 334556777774 5888888754 44 6788888888999999887763 55555667888888888777654 4445
Q ss_pred ccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-cc
Q 005619 253 IKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NL 331 (688)
Q Consensus 253 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~ 331 (688)
...+|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ ++.....+|.. ..|+.+.+..+... .....+ .+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c 204 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSEC 204 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTC
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhc
Confidence 5566777888888888654 33355566777888888887654 33344555654 46777777654322 222333 56
Q ss_pred CccceEeeecCccccCCchhcc--------------CCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCc
Q 005619 332 SSVEHLYLQSNALGGSIPNTIF--------------RGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIP 397 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~~~~~~--------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 397 (688)
.+++.......... .....+. ....+..+.+.. .+......+|..+..|+.+.+..+... +..
T Consensus 205 ~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~ 281 (394)
T 4gt6_A 205 FALSTITSDSESYP-AIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGT 281 (394)
T ss_dssp TTCCEEEECCSSSC-BSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECT
T ss_pred cccceecccccccc-cccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecC
Confidence 66666655544332 1111111 112223333322 122223345555666666666544332 344
Q ss_pred hhhcCCCCCCEEEccCCcCccccch-hhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcce
Q 005619 398 HQLCQLRKLSIMDLSHNRLNGSIPA-CITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQV 476 (688)
Q Consensus 398 ~~~~~l~~L~~L~ls~n~l~~~~p~-~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 476 (688)
.+|.++++|+.+.+.. .++ .++. ++
T Consensus 282 ~aF~~c~~L~~i~l~~-~i~-~I~~~aF---------------------------------------------------- 307 (394)
T 4gt6_A 282 GAFMNCPALQDIEFSS-RIT-ELPESVF---------------------------------------------------- 307 (394)
T ss_dssp TTTTTCTTCCEEECCT-TCC-EECTTTT----------------------------------------------------
T ss_pred cccccccccccccCCC-ccc-ccCceee----------------------------------------------------
Confidence 4555666666665532 222 1111 11
Q ss_pred EEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 477 EVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
..+.+|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.+...+|.++++|+.+++.++...
T Consensus 308 ---------------~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 308 ---------------AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp ---------------TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH
T ss_pred ---------------cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee
Confidence 11445666666543 44455566677777777777543 55445566777777777777666543
Q ss_pred ccCCcCCCCCCCCCEEecCCCc
Q 005619 557 GQIPPQLTELHSLSKFDVSYND 578 (688)
Q Consensus 557 ~~~p~~l~~l~~L~~L~ls~N~ 578 (688)
. ..+.....|+.+.+..|.
T Consensus 371 ~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 371 W---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp H---HTCBCCCCC---------
T ss_pred h---hhhhccCCCCEEEeCCCC
Confidence 2 344555566666655443
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=119.15 Aligned_cols=66 Identities=27% Similarity=0.287 Sum_probs=54.7
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccC
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 559 (688)
+++|+.|+|++|++++..+..|..+++|+.|+|++|+|++..+..|+.+++|+.|+|++|++++..
T Consensus 53 l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 53 LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred cccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 456777777777777677777888999999999999999777778999999999999999988654
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.4e-14 Score=144.20 Aligned_cols=62 Identities=18% Similarity=0.248 Sum_probs=29.4
Q ss_pred cccEEEccCCccccc----CChhhhccCCCCeeeCCCCcCccC----CCccccCCCCCCeEeCCCCcccc
Q 005619 496 YMAGLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNG 557 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 557 (688)
.|++|||++|.+++. ++..+...++|+.|+|++|.|++. ++..+...++|++|||++|.++.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 445555555555432 133344445555555555555432 22233334555555555555553
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.5e-12 Score=133.72 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=83.7
Q ss_pred cccccEEEccC-CcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEE
Q 005619 494 LDYMAGLDLSS-NKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 494 l~~L~~LdLs~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 572 (688)
+++|+.|+|++ |.+++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..+..+..++ |++|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 46799999996 999999889999999999999999999999999999999999999999999988777777776 9999
Q ss_pred ecCCCcCccCCC
Q 005619 573 DVSYNDLSGPIP 584 (688)
Q Consensus 573 ~ls~N~l~~~~p 584 (688)
++++|++.|.|+
T Consensus 109 ~l~~N~~~c~c~ 120 (347)
T 2ifg_A 109 VLSGNPLHCSCA 120 (347)
T ss_dssp ECCSSCCCCCGG
T ss_pred EeeCCCccCCCc
Confidence 999999999876
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-12 Score=115.26 Aligned_cols=105 Identities=19% Similarity=0.263 Sum_probs=87.3
Q ss_pred ccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCC
Q 005619 497 MAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 576 (688)
Q Consensus 497 L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 576 (688)
-+.+++++|+++ .+|..+. ++|+.|+|++|+|++.+|..|+++++|+.|+|++|++++..+..|..+++|++|+|++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 367999999997 6676664 8999999999999999999999999999999999999988777889999999999999
Q ss_pred CcCccCCCC-CcccCCcCccccCCCCCCC
Q 005619 577 NDLSGPIPD-KEQFSTFDESSYRGNLHLC 604 (688)
Q Consensus 577 N~l~~~~p~-~~~~~~~~~~~~~~n~~l~ 604 (688)
|++++..|. -..+..+....+.+|+.-|
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 999976554 2345555555566665444
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-13 Score=139.62 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=33.1
Q ss_pred ccccEEEccCCccccc----CChhhhccCCCCeeeCCCCcCccCCCccccCC---C--CCCeEe--CCCCcccc
Q 005619 495 DYMAGLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGSIPESFSNL---K--MIESLD--LSHNKLNG 557 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~--~L~~L~--Ls~N~l~~ 557 (688)
+.|+.|||++|.+++. ++..+...++|++|+|++|.|++.....+..+ . .|+.+. +..|.++.
T Consensus 211 ~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 211 RQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp SCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred CCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 4566677777766543 23344456777777777777765444333322 1 166666 66666553
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.20 E-value=9.3e-10 Score=114.24 Aligned_cols=298 Identities=9% Similarity=0.076 Sum_probs=198.6
Q ss_pred hhcCCCCCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCC
Q 005619 13 VIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQF 92 (688)
Q Consensus 13 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~ 92 (688)
++....+|+.+.+... ++ .|+..+|.+|++|+.+++..+ ...++..+|.++ +|+.+.+.. .+..++.......
T Consensus 41 ~~~~~~~i~~v~ip~~-vt--~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG-IT--SIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT 113 (379)
T ss_dssp TGGGGGGCSEEEECTT-EE--EECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC
T ss_pred ccccccCCEEEEeCCC-cc--ChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEeccceeccC
Confidence 4666678888888754 33 355678889999999998754 556777788887 677777764 3666655444445
Q ss_pred CCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCC--CCCCCCCCcCEEEccCCCCCC------------CCChh
Q 005619 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGF--QLTSAQHGLISLDISSNNFTG------------KLPQN 158 (688)
Q Consensus 93 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~L~~L~ls~n~~~~------------~~~~~ 158 (688)
+|+.+++..+ ++ .+....+.++ +++.+.+..+ ++.+ .....+..++.+.+..+.... .....
T Consensus 114 ~L~~i~lp~~-~~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (379)
T 4h09_A 114 DLDDFEFPGA-TT-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILES 189 (379)
T ss_dssp CCSEEECCTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEE
T ss_pred CcccccCCCc-cc-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecc
Confidence 8999988765 33 3444455443 5666655443 2211 122356667776665443220 01111
Q ss_pred hhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCC
Q 005619 159 MGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR 238 (688)
Q Consensus 159 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 238 (688)
+.....+..+.+.... .......+..+..|+.+.+..+ +. .+....+..+..|+.+.+..+ ++......|.++.+
T Consensus 190 -~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~-~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 190 -YPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VT-TLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp -CCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CC-EECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred -ccccccccccccccce-eEEeecccccccccceeeeccc-ee-EEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 1134455555554432 2244566777888888888655 33 566777788889999988765 55555677888889
Q ss_pred CCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC
Q 005619 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318 (688)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 318 (688)
|+.+.+..+ +......+|..+.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 999988654 55455667888899999999888887777788999999999999754 6656677899999999998875
Q ss_pred CcCcccccccc
Q 005619 319 NNLSGSMISTL 329 (688)
Q Consensus 319 n~l~~~~~~~~ 329 (688)
+ ++......|
T Consensus 343 ~-v~~I~~~aF 352 (379)
T 4h09_A 343 S-ITLIESGAF 352 (379)
T ss_dssp T-CCEECTTTT
T ss_pred c-cCEEchhHh
Confidence 4 555555555
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-09 Score=112.70 Aligned_cols=314 Identities=9% Similarity=0.056 Sum_probs=169.3
Q ss_pred hhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcch-hhhCCCCCCEEECCCCcCCCCCchHHhhCCC
Q 005619 39 SLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPN-FLLHQFNLKYLDLSHNKLAGNFPTWLLENNT 117 (688)
Q Consensus 39 ~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~ 117 (688)
.+....+|+.+.+... +..++..+|.+|.+|+.+.+..+ +..|+. ++.++ +|+.+.+..+ ++ .+....|.. .
T Consensus 41 ~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-~ 113 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-T 113 (379)
T ss_dssp TGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT-C
T ss_pred ccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc-C
Confidence 4566778888888643 56777778888888998888754 666644 45554 6777777654 44 555555644 3
Q ss_pred CCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccC
Q 005619 118 KLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSS 197 (688)
Q Consensus 118 ~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~ 197 (688)
+|+.+.+..+-..-........+++.+.+..+ ++ .+....+..+..++...+..+.........+ ....
T Consensus 114 ~L~~i~lp~~~~~i~~~~F~~~~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~-~~~~-------- 182 (379)
T 4h09_A 114 DLDDFEFPGATTEIGNYIFYNSSVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYV-LYNK-------- 182 (379)
T ss_dssp CCSEEECCTTCCEECTTTTTTCCCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTE-EEET--------
T ss_pred CcccccCCCccccccccccccceeeeeeccce-ee-ccccchhcccccccccccccccceeecccce-eccc--------
Confidence 67777776542110000111223444444332 22 3333333345555555554332211100000 0000
Q ss_pred CcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCC
Q 005619 198 NKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277 (688)
Q Consensus 198 n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 277 (688)
. ......+..+..+..+.+.... .......+..+.+|+.+.+..+ +......++..+..|+.+.+..+ ++...
T Consensus 183 ~----~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~ 255 (379)
T 4h09_A 183 N----KTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIG 255 (379)
T ss_dssp T----SSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEEC
T ss_pred c----cceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeC
Confidence 0 0000112233344444443321 1223344555666666666543 33344455666667777776654 44444
Q ss_pred chhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCC
Q 005619 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGS 356 (688)
Q Consensus 278 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~ 356 (688)
...|.++.+|+.+.+..+ +......+|.+|.+|+.+.+.++.+.......| ++.+|+.+.+..+ ++.....+|.+|.
T Consensus 256 ~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~ 333 (379)
T 4h09_A 256 SFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCK 333 (379)
T ss_dssp TTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred ccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCC
Confidence 556666777777776543 443455567777777777777766666655555 6777777777543 4434455677777
Q ss_pred CccEEeCcCCcCCCcCchhhhcCC
Q 005619 357 ALETLDLRDNYFFGRIPHQINEHS 380 (688)
Q Consensus 357 ~L~~L~l~~n~l~~~~~~~~~~l~ 380 (688)
+|+.+.+..+ ++.....+|.++.
T Consensus 334 ~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 334 ALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp TCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCCEEEECCc-cCEEchhHhhCCC
Confidence 8887777654 4444455666654
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=122.78 Aligned_cols=105 Identities=19% Similarity=0.243 Sum_probs=89.4
Q ss_pred EEEccCC-cccccCChhhhccCCCCeeeCCC-CcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCC
Q 005619 499 GLDLSSN-KLTGDIPSEICDLQNIHGLNLSH-NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSY 576 (688)
Q Consensus 499 ~LdLs~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~ 576 (688)
.++++++ +++ .+|. +..+++|+.|+|++ |+|++..|..|+++++|+.|+|++|+|++.+|..|.++++|++|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4799998 898 4787 99999999999996 999988889999999999999999999999999999999999999999
Q ss_pred CcCccCCCCCcccCCcCccccCCCCCCCC
Q 005619 577 NDLSGPIPDKEQFSTFDESSYRGNLHLCG 605 (688)
Q Consensus 577 N~l~~~~p~~~~~~~~~~~~~~~n~~l~~ 605 (688)
|+|++..|.......+......+|+.-|.
T Consensus 90 N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 90 NALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CccceeCHHHcccCCceEEEeeCCCccCC
Confidence 99997665443323355666677776664
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.1e-09 Score=108.17 Aligned_cols=83 Identities=16% Similarity=0.259 Sum_probs=41.3
Q ss_pred cccccEEEccCCcccccCChhhh---ccCCCCeeeCCCCcCccC----CCccccCCCCCCeEeCCCCcccccCCcCCCC-
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEIC---DLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQIPPQLTE- 565 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~- 565 (688)
++.|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.++...-..+..
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a 330 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS 330 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence 34555555555555433322222 345666666666666543 2233344566666666666665432222222
Q ss_pred CCCCCEEecCCCc
Q 005619 566 LHSLSKFDVSYND 578 (688)
Q Consensus 566 l~~L~~L~ls~N~ 578 (688)
+ ...++++.++
T Consensus 331 l--g~~~~~~~~~ 341 (362)
T 2ra8_A 331 L--PMKIDVSDSQ 341 (362)
T ss_dssp C--CSEEECCSBC
T ss_pred c--CCEEEecCCc
Confidence 1 2446666665
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.6e-09 Score=110.31 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=28.3
Q ss_pred cCccceEeeecCccccCCchhcc---CCCCccEEeCcCCcCCCcC----chhhhcCCCccEEeccCCcCC
Q 005619 331 LSSVEHLYLQSNALGGSIPNTIF---RGSALETLDLRDNYFFGRI----PHQINEHSNLRALLLRGNYLQ 393 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~ 393 (688)
+++|++|++.+|.+.+..+..+. .+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++
T Consensus 251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 44555555555554432222221 2345555555555554322 122233455555555555544
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=4e-08 Score=90.07 Aligned_cols=17 Identities=12% Similarity=0.024 Sum_probs=8.2
Q ss_pred cCCCCCCEEEccCCcCc
Q 005619 401 CQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 401 ~~l~~L~~L~ls~n~l~ 417 (688)
...++|++|+|++|.+.
T Consensus 62 ~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp TTCCSCCEEECTTSCCC
T ss_pred HhCCCcCEEECcCCCCC
Confidence 33444555555555443
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=2.9e-08 Score=91.06 Aligned_cols=87 Identities=18% Similarity=0.323 Sum_probs=69.9
Q ss_pred cccccEEEccCCccccc----CChhhhccCCCCeeeCCCCcCccC----CCccccCCCCCCeEeC--CCCccccc----C
Q 005619 494 LDYMAGLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDL--SHNKLNGQ----I 559 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~----~ 559 (688)
.+.|++|||++|.+... +...+...+.|++|+|++|.|++. +...+...+.|++|+| ++|.++.. +
T Consensus 64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l 143 (185)
T 1io0_A 64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI 143 (185)
T ss_dssp CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH
Confidence 35789999999999754 345566678999999999999854 4566788899999999 88999854 3
Q ss_pred CcCCCCCCCCCEEecCCCcCc
Q 005619 560 PPQLTELHSLSKFDVSYNDLS 580 (688)
Q Consensus 560 p~~l~~l~~L~~L~ls~N~l~ 580 (688)
...+...++|++|++++|.+.
T Consensus 144 ~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 144 ANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHhCCCcCEEeccCCCCC
Confidence 345566689999999999875
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-07 Score=90.84 Aligned_cols=67 Identities=22% Similarity=0.318 Sum_probs=35.6
Q ss_pred hccCCCCeeeCCCCcCcc--CCCccccCCCCCCeEeCCCCcccccCCcCCCCCC--CCCEEecCCCcCccCCC
Q 005619 516 CDLQNIHGLNLSHNFLSG--SIPESFSNLKMIESLDLSHNKLNGQIPPQLTELH--SLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 516 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~--~L~~L~ls~N~l~~~~p 584 (688)
.++++|+.|+||+|+|++ .+|..++.+++|+.|+|++|++++. ..+..+. +|++|+|++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 345555566666665554 2334445555666666666665543 2233333 56666666666655554
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.42 E-value=7.1e-08 Score=92.84 Aligned_cols=80 Identities=28% Similarity=0.316 Sum_probs=66.5
Q ss_pred cccccccEEEccCCcccc--cCChhhhccCCCCeeeCCCCcCccCCCccccCCC--CCCeEeCCCCcccccCCc------
Q 005619 492 VILDYMAGLDLSSNKLTG--DIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLK--MIESLDLSHNKLNGQIPP------ 561 (688)
Q Consensus 492 ~~l~~L~~LdLs~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------ 561 (688)
..++.|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 347899999999999998 5578888999999999999999965 3344444 999999999999987663
Q ss_pred -CCCCCCCCCEEe
Q 005619 562 -QLTELHSLSKFD 573 (688)
Q Consensus 562 -~l~~l~~L~~L~ 573 (688)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 367789998886
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.95 E-value=3.1e-06 Score=75.22 Aligned_cols=83 Identities=8% Similarity=-0.013 Sum_probs=44.4
Q ss_pred ccceEeeecCccccCCchhccCCCCccEEeCcCCc-CCCcCchhhhcC----CCccEEeccCCc-CCCCCchhhcCCCCC
Q 005619 333 SVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNY-FFGRIPHQINEH----SNLRALLLRGNY-LQGPIPHQLCQLRKL 406 (688)
Q Consensus 333 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~L 406 (688)
.|++|++++|.++...-..+..+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 34555555555444444444555566666666653 443333334332 356666666663 554444445566677
Q ss_pred CEEEccCCc
Q 005619 407 SIMDLSHNR 415 (688)
Q Consensus 407 ~~L~ls~n~ 415 (688)
+.|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777664
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=97.93 E-value=3.2e-06 Score=75.20 Aligned_cols=85 Identities=12% Similarity=0.084 Sum_probs=70.2
Q ss_pred CCCCcEEEccCCcCcccccccc-ccCccceEeeecCc-cccCCchhccCC----CCccEEeCcCCc-CCCcCchhhhcCC
Q 005619 308 LAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNA-LGGSIPNTIFRG----SALETLDLRDNY-FFGRIPHQINEHS 380 (688)
Q Consensus 308 l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~~~~~----~~L~~L~l~~n~-l~~~~~~~~~~l~ 380 (688)
-..|++||+++|.+++.....+ .+++|++|+|++|. +++..-..+..+ ++|++|++++|. +++..-..+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999988766666 89999999999995 776555566653 479999999985 8776667788899
Q ss_pred CccEEeccCCcC
Q 005619 381 NLRALLLRGNYL 392 (688)
Q Consensus 381 ~L~~L~L~~n~l 392 (688)
+|+.|++++|.-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 999999999963
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=9.8e-05 Score=62.59 Aligned_cols=60 Identities=22% Similarity=0.216 Sum_probs=48.2
Q ss_pred eeeCCCCcCc-cCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCC
Q 005619 523 GLNLSHNFLS-GSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 523 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 584 (688)
.++-+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|++|+|++|++.|.|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 6777777776 34554432 468899999999998888889999999999999999999875
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00017 Score=65.40 Aligned_cols=85 Identities=13% Similarity=0.187 Sum_probs=48.8
Q ss_pred CccceEeeecCccccC----CchhccCCCCccEEeCcCCcCCCcC----chhhhcCCCccEEeccCCc---CCCC----C
Q 005619 332 SSVEHLYLQSNALGGS----IPNTIFRGSALETLDLRDNYFFGRI----PHQINEHSNLRALLLRGNY---LQGP----I 396 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~---l~~~----~ 396 (688)
+.|+.|+|++|.+.+. +...+..-+.|++|+|++|.|.+.. .+.+..-+.|+.|+|++|. +... +
T Consensus 70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~i 149 (197)
T 1pgv_A 70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 149 (197)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHH
Confidence 4455555555555432 2233334467777777777775432 2344455668888887653 3321 2
Q ss_pred chhhcCCCCCCEEEccCCcC
Q 005619 397 PHQLCQLRKLSIMDLSHNRL 416 (688)
Q Consensus 397 ~~~~~~l~~L~~L~ls~n~l 416 (688)
.+.+..-+.|+.|+++.|.+
T Consensus 150 a~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 150 MMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCcCeEeccCCCc
Confidence 34455567888888887754
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00044 Score=62.61 Aligned_cols=61 Identities=13% Similarity=0.125 Sum_probs=30.5
Q ss_pred CccceEeeecCccccCC----chhccCCCCccEEeCcCC---cCCC----cCchhhhcCCCccEEeccCCcC
Q 005619 332 SSVEHLYLQSNALGGSI----PNTIFRGSALETLDLRDN---YFFG----RIPHQINEHSNLRALLLRGNYL 392 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~~----~~~~~~~~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~L~~n~l 392 (688)
+.|++|+|+.|.|.+.. ...+..-+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|.+
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 34555555555544322 223333455677777644 2322 1234455556777777766544
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0014 Score=55.42 Aligned_cols=57 Identities=21% Similarity=0.268 Sum_probs=47.1
Q ss_pred cEEEccCCccc-ccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 498 AGLDLSSNKLT-GDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 498 ~~LdLs~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
..+|.++++++ ..+|..+ -++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36889999987 3566543 246999999999999877888999999999999999886
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 688 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-16 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-12 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 6e-11 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 5e-09 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 2e-08 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 1e-09 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-05 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 4e-04 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-12 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-10 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-09 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-08 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 1e-07 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 9e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 9e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 1e-10 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 9e-08 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-07 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 7e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 1e-06 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-04 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.002 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-08 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-08 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 7e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 5e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 8e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 8e-06 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 2e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 4e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 6e-04 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.001 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 0.002 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 4e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 4e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.004 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 0.004 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 79.3 bits (194), Expect = 2e-16
Identities = 58/341 (17%), Positives = 110/341 (32%), Gaps = 29/341 (8%)
Query: 14 IANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKV 73
+ L +L + +N+ + +L L + + + + N
Sbjct: 62 VEYLNNLTQINFSNNQLTD-ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 120
Query: 74 LSLPNCNLGVIPNFL-----------LHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVL 122
L + N + + + L N T LE L
Sbjct: 121 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERL 180
Query: 123 YLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPS 182
+++N S + + L SL ++N + P + L +L N +
Sbjct: 181 DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNG---NQLKD--IG 235
Query: 183 SIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFL 242
++ + L LD+++N+ + +P++ L L+L N LT L L
Sbjct: 236 TLASLTNLTDLDLANNQISNL---APLSGLTKLTELKLGANQISN--ISPLAGLTALTNL 290
Query: 243 YLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIP 302
L+ N L+ L L + N++S P + + + L L + N +
Sbjct: 291 ELNENQLEDISPISNLK--NLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--V 344
Query: 303 VQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNA 343
NL + L N +S NL+ + L L A
Sbjct: 345 SSLANLTNINWLSAGHNQISDL-TPLANLTRITQLGLNDQA 384
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 77.7 bits (190), Expect = 8e-16
Identities = 67/437 (15%), Positives = 129/437 (29%), Gaps = 77/437 (17%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKF 200
+ + N T + Q + L + S +G + + L ++ S+N+
Sbjct: 24 KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-----VEYLNNLTQINFSNNQL 78
Query: 201 AGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRS 260
+P+ N L + ++NN + L + D L
Sbjct: 79 TDI---TPLKNLTKLVDILMNNNQIADITPLANLTNLT----GLTLFNNQITDIDPLKNL 131
Query: 261 SELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENN 320
+ L L++S+N +S L+ + +N
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER------LDISSN 185
Query: 321 LSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHS 380
+ L+++E L +N + P I + L+ L L N + +
Sbjct: 186 KVSDISVLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLT 241
Query: 381 NLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGF 440
NL L L N + P L L KL+ + L N+++ P
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLA----------------- 282
Query: 441 VMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGL 500
L + + L + L
Sbjct: 283 ------------------------------GLTALTNLELNENQLEDISPISNLKNLTYL 312
Query: 501 DLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIP 560
L N ++ P + L + L ++N +S S +NL I L HN+++ P
Sbjct: 313 TLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368
Query: 561 PQLTELHSLSKFDVSYN 577
L L +++ ++
Sbjct: 369 --LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 67.3 bits (163), Expect = 2e-12
Identities = 64/354 (18%), Positives = 117/354 (33%), Gaps = 48/354 (13%)
Query: 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL----- 124
Q+ L + I + + NL ++ S+N+L P L+N TKL + +
Sbjct: 45 QVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP---LKNLTKLVDILMNNNQI 100
Query: 125 --------TNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSF 176
N + + L +N +L N + L + +
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160
Query: 177 EGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNL 236
GN + + + L L+ S + +LE L +NN L
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISD--ITPLGIL 218
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
T L L L+ N L + L LD++NN +S P + + L L + N
Sbjct: 219 TNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQ 274
Query: 297 LEGNIPVQ--------------------FNNLAILQILDISENNLSGSMISTLNLSSVEH 336
+ P+ +NL L L + NN+S +L+ ++
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQR 333
Query: 337 LYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
L+ +N + S +++ + + L N P + + + L L
Sbjct: 334 LFFANNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 62.7 bits (151), Expect = 6e-11
Identities = 58/354 (16%), Positives = 105/354 (29%), Gaps = 41/354 (11%)
Query: 97 LDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLP 156
L + L+ T L+ L S G + + L ++ S+N T P
Sbjct: 27 TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN---NLTQINFSNNQLTDITP 83
Query: 157 QNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLE 216
L + N + L ++ L+ S
Sbjct: 84 LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNT 143
Query: 217 WLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGK---------IKDGLLRSSELMVLD 267
+S + + L N + L + + L L
Sbjct: 144 ISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 203
Query: 268 ISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMIS 327
+NN +S P + +NL LS++ N L+ +L L LD++ N +S +
Sbjct: 204 ATNNQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN-LAP 258
Query: 328 TLNLSSVEHLYLQSNALGGSIP--------------------NTIFRGSALETLDLRDNY 367
L+ + L L +N + P + I L L L N
Sbjct: 259 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNN 318
Query: 368 FFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421
P ++ + L+ L N + L L ++ + HN+++ P
Sbjct: 319 ISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 56.2 bits (134), Expect = 5e-09
Identities = 65/416 (15%), Positives = 127/416 (30%), Gaps = 76/416 (18%)
Query: 170 NISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQI 229
+ K + + + + + L S V +L + SNN
Sbjct: 28 VLGKTNVTDTVSQT--DLDQVTTLQADRLGIK---SIDGVEYLNNLTQINFSNNQLTD-- 80
Query: 230 FPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYI 289
NLT+L+ + ++NN + L + + L + + +
Sbjct: 81 ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELS 140
Query: 290 LSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIP 349
+ I + + +S N + NL+++E L + SN +
Sbjct: 141 SN--------TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192
Query: 350 NTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIM 409
E+L +N P I +NL L L GN L+ L L L+ +
Sbjct: 193 LAKLTNL--ESLIATNNQISDITPLGI--LTNLDELSLNGNQLKDI--GTLASLTNLTDL 246
Query: 410 DLSHNRLNGSIP-ACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGID 468
DL++N+++ P + +T L K+G+ +S
Sbjct: 247 DLANNQISNLAPLSGLTKLTELKLGANQISNI--------------------------SP 280
Query: 469 GRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSH 528
L + + L + L L N ++ P
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---------------- 324
Query: 529 NFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584
S+L ++ L ++NK++ L L +++ +N +S P
Sbjct: 325 ----------VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 54.6 bits (130), Expect = 2e-08
Identities = 38/174 (21%), Positives = 67/174 (38%), Gaps = 16/174 (9%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
++ NQL I +A+LT+L L L +N+ L+ L+KL +L Q+
Sbjct: 226 LNGNQLKDI--GTLASLTNLTDLDLANNQISN----LAPLSGLTKLTELKLGAN----QI 275
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+ L N N + + + NL YL L N ++ P + + TKL+
Sbjct: 276 SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP---VSSLTKLQ 332
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN 174
L+ NN S + + L N + P L ++ + ++
Sbjct: 333 RLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLAN---LTRITQLGLNDQ 383
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 72.9 bits (177), Expect = 2e-14
Identities = 62/291 (21%), Positives = 108/291 (37%), Gaps = 32/291 (10%)
Query: 330 NLSSVEHLYLQSNALGG--SIPNTIFRGSALETLDLRDNYFF-GRIPHQINEHSNLRALL 386
V +L L L IP+++ L L + G IP I + + L L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107
Query: 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVG---SRYLSGFVMV 443
+ + G IP L Q++ L +D S+N L+G++P I++L +SG +
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD 167
Query: 444 VMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNF-MTKNRYESYKGVILDYMAGLDL 502
+ S +L+ + V+ ++ D
Sbjct: 168 SYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH 227
Query: 503 SSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562
+ ++ +N++GL+L +N + G++P+ + LK + SL++S N L
Sbjct: 228 LAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL------- 280
Query: 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT 613
G IP FD S+Y N LCG P+ +CT
Sbjct: 281 -----------------CGEIPQGGNLQRFDVSAYANNKCLCGSPL-PACT 313
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 70.2 bits (170), Expect = 1e-13
Identities = 55/271 (20%), Positives = 94/271 (34%), Gaps = 5/271 (1%)
Query: 82 GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL-LENNTKLEVLYLTNNSFSGFQLTSAQHG 140
GV+ + + + LDLS L +P L N L LY+ + + A
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 141 LISLDIS--SNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSN 198
L L ++ + + L ++ S N+ G +P SI + L + N
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
Query: 199 KFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLL 258
+ +G + S + + +S N G+I P + NL + + L
Sbjct: 160 RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL--AFVDLSRNMLEGDASVLF 217
Query: 259 RSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318
S + + +G NL L + N + G +P L L L++S
Sbjct: 218 GSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277
Query: 319 NNLSGSMISTLNLSSVEHLYLQSNALGGSIP 349
NNL G + NL + +N P
Sbjct: 278 NNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 58.2 bits (139), Expect = 1e-09
Identities = 62/289 (21%), Positives = 93/289 (32%), Gaps = 28/289 (9%)
Query: 8 GILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLP 67
G+L + L L SLANL L + +L+
Sbjct: 40 GVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK 99
Query: 68 TFQLKVLSL-PNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTN 126
QL L + G IP+FL L LD S+N L+G P +
Sbjct: 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI-------------- 145
Query: 127 NSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGK 186
S+ L+ + N +G +P + G M IS+N G IP +
Sbjct: 146 ---------SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN 196
Query: 187 MQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDN 246
+ + ++ E S + N L L L N
Sbjct: 197 LNLAFVDL---SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253
Query: 247 NHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
N G + GL + L L++S N+L G IP GN + + + N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 44.4 bits (103), Expect = 3e-05
Identities = 10/46 (21%), Positives = 18/46 (39%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKL 46
+ +N++ G LP + L L L + N G + +L
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 40.5 bits (93), Expect = 4e-04
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 76 LPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
L N + G +P L L L++S N L G P N + +V NN
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNKC 303
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.4 bits (176), Expect = 2e-14
Identities = 47/267 (17%), Positives = 86/267 (32%), Gaps = 12/267 (4%)
Query: 71 LKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
+L L N + + + NL L L +NK++ P KLE LYL+ N
Sbjct: 33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSKNQL 91
Query: 130 SGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLP--KLDCMNISKNSFEGNIPSSIGKM 187
L + N K+ +++ L + + + G + M
Sbjct: 92 KE--LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149
Query: 188 QGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNN 247
+ L + ++ ++ P SL L L N + L L L L N
Sbjct: 150 KKLSYIRIADTN----ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 248 HFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNN 307
S L + L L ++NN L +P + + + ++ + N + F
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264
Query: 308 LAILQIL-DISENNLSGSMISTLNLSS 333
S +L + + +
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQYWEIQP 291
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 66.2 bits (160), Expect = 2e-12
Identities = 40/301 (13%), Positives = 84/301 (27%), Gaps = 35/301 (11%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ +LD+ NN ++ N NL+ L + N + P F L L+ L +S+N
Sbjct: 30 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 320 NLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD--NYFFGRIPHQIN 377
L + +++ L + N + + + + ++L G
Sbjct: 90 QLKE--LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 378 EHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437
L + + + L +L L N++ A + L
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSF 204
Query: 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYM 497
+ V L Y+
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKL--------------------VKVPGGLADHKYI 244
Query: 498 AGLDLSSNKLTG------DIPSEICDLQNIHGLNLSHNFLSGS--IPESFSNLKMIESLD 549
+ L +N ++ P + G++L N + P +F + + ++
Sbjct: 245 QVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 304
Query: 550 L 550
L
Sbjct: 305 L 305
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 64.3 bits (155), Expect = 9e-12
Identities = 43/228 (18%), Positives = 71/228 (31%), Gaps = 26/228 (11%)
Query: 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHL 273
L L NN ++ NL L L L NN S +L L +S N L
Sbjct: 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 91
Query: 274 SGHIPSWMGNFSNLYI-----------------------LSMSKNLLEGNIPVQFNNLAI 310
L + L + G F +
Sbjct: 92 KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151
Query: 311 LQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFG 370
L + I++ N+ + I S+ L+L N + ++ + L L L N
Sbjct: 152 LSYIRIADTNI--TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 209
Query: 371 RIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNG 418
+ +LR L L N L +P L + + ++ L +N ++
Sbjct: 210 VDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 60.1 bits (144), Expect = 2e-10
Identities = 39/182 (21%), Positives = 59/182 (32%), Gaps = 3/182 (1%)
Query: 237 TRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNL 296
L L NN + L L + NN +S P L L +SKN
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90
Query: 297 LEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGS 356
L+ L L++ + + S+ + LN V L G
Sbjct: 91 LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150
Query: 357 ALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRL 416
L + + D IP + +L L L GN + L L L+ + LS N +
Sbjct: 151 KLSYIRIADTN-ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 417 NG 418
+
Sbjct: 208 SA 209
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 57.4 bits (137), Expect = 2e-09
Identities = 51/291 (17%), Positives = 100/291 (34%), Gaps = 27/291 (9%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
+ +N+++ I NL +L L L +NK + A L KLE LS L ++
Sbjct: 38 LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG--AFAPLVKLERLYLSKN-QLKEL 94
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
+ +L+V + L+Q + L + K +G + KL
Sbjct: 95 PEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLS 153
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
+ + + + + L L + N T ++ L L + +S NS
Sbjct: 154 YIRIADTNITTIP-QGLPPSLTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVD 211
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLL 240
S+ LR L +++NK + + ++ + L NNN
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLHNNNIS-------------- 255
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILS 291
+ +N F + S + + +N + + F +Y+ +
Sbjct: 256 --AIGSNDFCPPGYNTKKAS--YSGVSLFSNPVQ-YWEIQPSTFRCVYVRA 301
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.3 bits (124), Expect = 7e-08
Identities = 35/240 (14%), Positives = 80/240 (33%), Gaps = 23/240 (9%)
Query: 380 SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSG 439
+ L L+ N + L+ L + L +N+++ P L+ +
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER------- 83
Query: 440 FVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499
+ N +L + + +V N +TK R + G+ +
Sbjct: 84 ------------LYLSKNQLKELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 130
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L + K +G ++ + + ++ ++ +L L L NK+
Sbjct: 131 LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL---TELHLDGNKITKVD 187
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELL 619
L L++L+K +S+N +S + + N L P + ++++
Sbjct: 188 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVV 247
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.0 bits (123), Expect = 1e-07
Identities = 43/254 (16%), Positives = 74/254 (29%), Gaps = 25/254 (9%)
Query: 347 SIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL 406
+P + LDL++N NL L+L N + P L KL
Sbjct: 24 KVPKDLPPD--TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81
Query: 407 SIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466
+ LS N+L L +V ++ + N N + + L
Sbjct: 82 ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK--------SVFNGLNQMIVVELGT 133
Query: 467 IDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNL 526
+S G + K ++ +T IP + ++ L+L
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYI------------RIADTNIT-TIPQGL--PPSLTELHL 178
Query: 527 SHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPDK 586
N ++ S L + L LS N ++ L L + ++ N L
Sbjct: 179 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGL 238
Query: 587 EQFSTFDESSYRGN 600
N
Sbjct: 239 ADHKYIQVVYLHNN 252
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.9 bits (115), Expect = 9e-07
Identities = 35/189 (18%), Positives = 61/189 (32%), Gaps = 8/189 (4%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
LDL +NK+T + +L+N+H L L +N +S P +F+ L +E L LS N
Sbjct: 36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN------ 89
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELL 619
QL EL + + K + S F+ + + L P+ S
Sbjct: 90 --QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147
Query: 620 ETSSKGAEDESAVDMVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIEECIDLCYY 679
+ ++ S + L I V+ + + +
Sbjct: 148 GMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI 207
Query: 680 WLFKYVFYW 688
Sbjct: 208 SAVDNGSLA 216
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 9e-11
Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 6/256 (2%)
Query: 117 TKLEVLYLTNNSFSGFQLTSAQH--GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKN 174
+ ++L N S S + L L + SN +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 175 SFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYV 234
P++ + L L + EL +L++L L +N +
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLD-RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 235 NLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSK 294
+L L L+L N S + L L + N ++ P + L L +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 295 NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFR 354
N L L LQ L +++N + + ++ S+ + S+P
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR-LA 269
Query: 355 GSALETLDLRDNYFFG 370
G L L N G
Sbjct: 270 GRDL--KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (146), Expect = 1e-10
Identities = 53/300 (17%), Positives = 89/300 (29%), Gaps = 49/300 (16%)
Query: 260 SSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISEN 319
+ + + N +S + NL IL + N+L F LA+L+ LD+S+N
Sbjct: 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90
Query: 320 NLSGSMISTL--NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQIN 377
S+ L + L+L L P +AL+ L L+DN
Sbjct: 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150
Query: 378 EHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYL 437
+ NL L L GN + L L + L NR+ P +L +
Sbjct: 151 DLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210
Query: 438 SGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYM 497
+ + + Y
Sbjct: 211 NNLSALPTEALAPLRALQY----------------------------------------- 229
Query: 498 AGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNG 557
L L+ N D + + S + + S+P+ + + L+ N L G
Sbjct: 230 --LRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDL---KRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (122), Expect = 9e-08
Identities = 35/256 (13%), Positives = 75/256 (29%), Gaps = 10/256 (3%)
Query: 332 SSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNY 391
++ + ++L N + + L L L N + L L L N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 392 LQGPIP----HQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFV--MVVM 445
+ H L +L L + L + + L + + L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 446 DLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSN 505
+ + + N + G ++ ++ + L + L L +N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 506 KLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTE 565
L+ + L+ + L L+ N + ++ S +++ +P
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ---R 267
Query: 566 LHSLSKFDVSYNDLSG 581
L ++ NDL G
Sbjct: 268 LAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 5e-07
Identities = 47/210 (22%), Positives = 76/210 (36%), Gaps = 2/210 (0%)
Query: 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHL 273
+ + + L N ++ L L+L +N + + L LD+S+N
Sbjct: 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92
Query: 274 SGHI-PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NL 331
+ P+ L+ L + + L+ P F LA LQ L + +N L T +L
Sbjct: 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152
Query: 332 SSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNY 391
++ HL+L N + +L+ L L N PH + L L L N
Sbjct: 153 GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212
Query: 392 LQGPIPHQLCQLRKLSIMDLSHNRLNGSIP 421
L L LR L + L+ N
Sbjct: 213 LSALPTEALAPLRALQYLRLNDNPWVCDCR 242
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 7e-06
Identities = 22/150 (14%), Positives = 44/150 (29%), Gaps = 5/150 (3%)
Query: 4 NQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIE 63
N L + +L +L +L L+ N+ + L L+ L
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISS--VPERAFRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 64 NCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLY 123
+ + N + L L+YL L+ N + L+
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFR 254
Query: 124 LTNNSFSGFQLTSAQHGLISLDISSNNFTG 153
+++ L G +++N+ G
Sbjct: 255 GSSSEVPC-SLPQRLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.9 bits (99), Expect = 7e-05
Identities = 42/240 (17%), Positives = 68/240 (28%), Gaps = 19/240 (7%)
Query: 380 SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSG 439
+ + + L GN + R L+I+ L N L A T L + +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 440 FVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499
+ V + L LD + LG +
Sbjct: 92 QLRSVDP----ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL------------- 134
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L N L DL N+ L L N +S +F L ++ L L N++
Sbjct: 135 -YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH 193
Query: 560 PPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDES-SYRGNLHLCGPPINKSCTNLLEL 618
P +L L + N+LS + + N +C L +
Sbjct: 194 PHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKF 253
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.6 bits (135), Expect = 2e-09
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 8/209 (3%)
Query: 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDV 195
S + ++ N T LP ++ L +S+N +++ L L++
Sbjct: 7 SKVASHLEVNCDKRNLT-ALPPDLPKDTTILH---LSENLLYTFSLATLMPYTRLTQLNL 62
Query: 196 SSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKD 255
+ ++ V + ++N + L L L + N +
Sbjct: 63 DRAEL----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 256 GLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILD 315
L EL L + N L P + L LS++ N L N L L L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 316 ISENNLSGSMISTLNLSSVEHLYLQSNAL 344
+ EN+L + +L N
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 5e-07
Identities = 34/200 (17%), Positives = 58/200 (29%), Gaps = 23/200 (11%)
Query: 380 SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSG 439
+ L L N L L +L+ ++L L +L S
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQ 90
Query: 440 FVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499
+ ++ A + SL R LG E+
Sbjct: 91 SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG----------------- 133
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
N+L P + + L+L++N L+ + L+ +++L L N L I
Sbjct: 134 -----NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TI 187
Query: 560 PPQLTELHSLSKFDVSYNDL 579
P H L + N
Sbjct: 188 PKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.2 bits (113), Expect = 1e-06
Identities = 39/207 (18%), Positives = 55/207 (26%), Gaps = 7/207 (3%)
Query: 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYL 124
++ NL +P L + L LS N L F L T+L L L
Sbjct: 6 VSKVASHLEVNCDKRNLTALPPDLPK--DTTILHLSENLLYT-FSLATLMPYTRLTQLNL 62
Query: 125 TNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSI 184
+ Q L L + + + + ++P
Sbjct: 63 DRAELTKLQ---VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119
Query: 185 GKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYL 244
+ G L +T LE L L+NNN L L L L
Sbjct: 120 LRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179
Query: 245 DNNHFSGKIKDGLLRSSELMVLDISNN 271
N I G S L + N
Sbjct: 180 QENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 10/55 (18%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNK 554
++ LT +P ++ ++ L+LS N L + + L+L +
Sbjct: 15 VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.2 bits (87), Expect = 0.002
Identities = 26/178 (14%), Positives = 47/178 (26%), Gaps = 24/178 (13%)
Query: 71 LKVLSLPNCNL-GVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
+L L L L+ L L+L +L L L++ + S
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92
Query: 130 SGFQLTSA---------------------QHGLISLDISSNNFTGKLPQNMGIVLPKLDC 168
T G + N LP + PKL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 169 MNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226
++++ N+ + ++ L L + N L + L N +
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSLYT--IPKGFFGSHLLPFAFLHGNPWL 208
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.6 bits (127), Expect = 3e-08
Identities = 41/251 (16%), Positives = 78/251 (31%), Gaps = 13/251 (5%)
Query: 312 QILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR 371
Q LD++ NL + L V + + + F ++ +DL ++
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVS 61
Query: 372 IPHQINEH-SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFW 430
H I S L+ L L G L PI + L + L ++LS
Sbjct: 62 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121
Query: 431 KVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYK 490
++ LS + + + QL+L G + K+ +
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR----------KNLQKSDLSTLV 171
Query: 491 GVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSH-NFLSGSIPESFSNLKMIESLD 549
+ + S L D E L + L+LS + + +++L
Sbjct: 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQ 231
Query: 550 LSHNKLNGQIP 560
+ +G +
Sbjct: 232 VFGIVPDGTLQ 242
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 35/285 (12%), Positives = 76/285 (26%), Gaps = 21/285 (7%)
Query: 143 SLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAG 202
+LD++ N + ++ + ++ + + + ++ +D+S++
Sbjct: 4 TLDLTGKNLHPDVTGR--LLSQGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVIEV 60
Query: 203 ELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSE 262
++ C L+ L L I + L+ L L
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG------------- 107
Query: 263 LMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322
LS N S + + + + L +
Sbjct: 108 -FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166
Query: 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRD-NYFFGRIPHQINEHSN 381
S + + V S L F+ + L+ L L ++ E
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226
Query: 382 LRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITN 426
L+ L + G G + L L ++ + I N
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN 268
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.7 bits (104), Expect = 2e-05
Identities = 30/270 (11%), Positives = 75/270 (27%), Gaps = 19/270 (7%)
Query: 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSF 129
+ P + F ++++DLS++ + + +L +KL+ L L
Sbjct: 24 GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83
Query: 130 SGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQG 189
S + +L K + + L + + S + ++
Sbjct: 84 SD-------PIVNTL--------AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128
Query: 190 LRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHF 249
D + ++ T N + D+
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188
Query: 250 SGKIKDGLLRSSELMVLDISN-NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNL 308
+ + L L +S + +G L L + + +G + +
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA- 247
Query: 309 AILQILDISENNLSGSMISTLNLSSVEHLY 338
L L I+ ++ + T+ + ++
Sbjct: 248 --LPHLQINCSHFTTIARPTIGNKKNQEIW 275
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 44/271 (16%), Positives = 87/271 (32%), Gaps = 18/271 (6%)
Query: 32 GRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNL--GVIPNFLL 89
G+ L V + + F+++ + L N + + L
Sbjct: 9 GKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS 68
Query: 90 HQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSN 149
L+ L L +L+ L +N+ + + + FS F L + LD +
Sbjct: 69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNL 128
Query: 150 NFTGKLPQNMGIVLPKLDCMNISKNSFEG--------NIPSSIGKMQGLRLLDVSSNKFA 201
++ + V I++ + G ++ + + + L LD+S +
Sbjct: 129 SWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML 188
Query: 202 GELSQSPVTNCFSLEWLQLSN-NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLR- 259
L+ L LS + + + L L + G + DG L+
Sbjct: 189 KNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQV-----FGIVPDGTLQL 243
Query: 260 -SSELMVLDISNNHLSGHIPSWMGNFSNLYI 289
L L I+ +H + +GN N I
Sbjct: 244 LKEALPHLQINCSHFTTIARPTIGNKKNQEI 274
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.2 bits (128), Expect = 3e-08
Identities = 55/446 (12%), Positives = 111/446 (24%), Gaps = 20/446 (4%)
Query: 141 LISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG----NIPSSIGKMQGLRLLDVS 196
+ SLDI + + +L + + + +I S++ L L++
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63
Query: 197 SNKFAGE----LSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLF-LYLDNNHFSG 251
SN+ + Q T ++ L L N G + R L L + +
Sbjct: 64 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 123
Query: 252 KIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAIL 311
GL E ++ + S + S+ + + NN
Sbjct: 124 LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 183
Query: 312 QILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR 371
+ + L S L N L G
Sbjct: 184 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGM 243
Query: 372 IPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWK 431
L + G L ++ S L+ +
Sbjct: 244 AELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303
Query: 432 VGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKG 491
+ G + + + S L E +G
Sbjct: 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQG 363
Query: 492 VILDYMA--GLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGSIPESFS----- 540
+ L L+ ++ + + + ++ L+LS+N L +
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 541 NLKMIESLDLSHNKLNGQIPPQLTEL 566
++E L L + ++ +L L
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.7 bits (111), Expect = 4e-06
Identities = 21/194 (10%), Positives = 44/194 (22%), Gaps = 5/194 (2%)
Query: 500 LDLSSNKLTGDIPSEICD-LQNIHGLNLSHNFLSG----SIPESFSNLKMIESLDLSHNK 554
LD+ +L+ +E+ LQ + L L+ I + + L+L N+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 555 LNGQIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTN 614
L + + + L + + +
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD 126
Query: 615 LLELLETSSKGAEDESAVDMVAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIEECI 674
L + Y S A+ + +L E +
Sbjct: 127 AGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 186
Query: 675 DLCYYWLFKYVFYW 688
+ L
Sbjct: 187 RVLCQGLKDSPCQL 200
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (98), Expect = 1e-04
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 6/82 (7%)
Query: 93 NLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT------SAQHGLISLDI 146
+++ LD+ +L+ LL + +V+ L + + + L L++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 147 SSNNFTGKLPQNMGIVLPKLDC 168
SN + L C
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSC 84
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.1 bits (94), Expect = 3e-04
Identities = 21/174 (12%), Positives = 47/174 (27%), Gaps = 5/174 (2%)
Query: 520 NIHGLNLSHNFLSGS-IPESFSNLKMIESLDLSHNKLNGQ----IPPQLTELHSLSKFDV 574
+I L++ LS + E L+ + + L L I L +L++ ++
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 575 SYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNLLELLETSSKGAEDESAVDM 634
N+L S L L + + +L + ++ D
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 122
Query: 635 VAFYWSFVASCVTVMLGLLAILWVNPYWRRLWFYFIEECIDLCYYWLFKYVFYW 688
+ C ++ + + + L E +
Sbjct: 123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 176
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 7e-04
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 12/97 (12%)
Query: 64 NCLPTFQLKVLSLPNCNLG-----VIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLE---- 114
P L+VL L +C++ + LL +L+ LDLS+N L L+E
Sbjct: 364 LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ 423
Query: 115 NNTKLEVLYLTNNSFSG---FQLTSAQHGLISLDISS 148
LE L L + +S +L + + SL + S
Sbjct: 424 PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.002
Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 9/67 (13%)
Query: 70 QLKVLSLPNCNLG-----VIPNFLLHQFNLKYLDLSHNKL----AGNFPTWLLENNTKLE 120
Q +V+ L +C L I + L L L+L N+L L + K++
Sbjct: 28 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQ 87
Query: 121 VLYLTNN 127
L L N
Sbjct: 88 KLSLQNC 94
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.3 bits (113), Expect = 2e-06
Identities = 56/323 (17%), Positives = 93/323 (28%), Gaps = 21/323 (6%)
Query: 263 LMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322
L+++N LS +P + L L S N L +P +L + L + NNL
Sbjct: 40 AHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSL---KSLLVDNNNLK 91
Query: 323 GSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL 382
L + Q L ++ + ++ L+ I +N
Sbjct: 92 ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151
Query: 383 RALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVM 442
L L + DL + + I L +L+
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211
Query: 443 VVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDL 502
L + + + + Q S + +
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNL----Y 267
Query: 503 SSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562
N + +I S ++ LN+S+N L +P L E L S N L ++P
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-EVPEL 322
Query: 563 LTELHSLSKFDVSYNDLSGPIPD 585
L L V YN L PD
Sbjct: 323 PQNLKQL---HVEYNPLRE-FPD 341
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.7 bits (109), Expect = 5e-06
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQI 559
L++S+NKL ++P+ L+ L S N L+ +PE NLK L + +N L +
Sbjct: 289 LNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EF 339
Query: 560 PPQLTELHSL 569
P + L
Sbjct: 340 PDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 46.4 bits (108), Expect = 8e-06
Identities = 59/348 (16%), Positives = 107/348 (30%), Gaps = 27/348 (7%)
Query: 61 KIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLE 120
++ +CL Q L L N L +P +L+ L S N L T L E L+
Sbjct: 31 RLRDCLDR-QAHELELNNLGLSSLPELP---PHLESLVASCNSL-----TELPELPQSLK 81
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
L + NN+ L+ SNN KLP+ K+ ++ N+ +
Sbjct: 82 SLLVDNNNLKALS---DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVD---NNSLKKL 135
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLL 240
P ++ + + + + +T ++ + + L
Sbjct: 136 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 195
Query: 241 FLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300
L N + + + +++ + L ++ E
Sbjct: 196 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255
Query: 301 IPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALET 360
L L+ S N S+E L + +N L +P R LE
Sbjct: 256 FSGLSELPPNLYYLNASSNE---IRSLCDLPPSLEELNVSNNKL-IELPALPPR---LER 308
Query: 361 LDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSI 408
L N+ +P NL+ L + N L+ P + L +
Sbjct: 309 LIASFNH-LAEVPELP---QNLKQLHVEYNPLRE-FPDIPESVEDLRM 351
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 46.0 bits (107), Expect = 8e-06
Identities = 40/330 (12%), Positives = 83/330 (25%), Gaps = 14/330 (4%)
Query: 71 LKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL---LENNTKLEVLYLTNN 127
LK+ ++ + + LL ++K + LS N + WL + + LE+ ++
Sbjct: 10 LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69
Query: 128 SFSGF--QLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIG 185
++ A L+ + + + + + +
Sbjct: 70 FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLH 129
Query: 186 KMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245
+ EL+ + + N T L
Sbjct: 130 NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 189
Query: 246 NNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQF 305
L+ L + N S L+ ++
Sbjct: 190 TVKMVQNGIRPEGIEHLLLEGLAYCQEL--KVLDLQDNTFTHLGSSALAIALKSWPNLRE 247
Query: 306 NNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRG-----SALET 360
L + + S L ++ L LQ N + T+ L
Sbjct: 248 LGLNDCLLSARGAAAV-VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306
Query: 361 LDLRDNYFFGRIPHQINEHSNLRALLLRGN 390
L+L N F ++E + + RG
Sbjct: 307 LELNGN-RFSEEDDVVDEIREVFSTRGRGE 335
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 41.2 bits (96), Expect = 5e-05
Identities = 22/126 (17%), Positives = 44/126 (34%), Gaps = 12/126 (9%)
Query: 1 MSSNQLSGILPSVIANLTSLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQV 60
++ L+ + + L + +L L N+ + + +L L L+ ++E
Sbjct: 5 LAHKDLTVL--CHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE------ 56
Query: 61 KIENCLPTFQLKVLSLPNCNL--GVIPNFLLHQFNLKYLDLSHNKLAG--NFPTWLLENN 116
++ +L+ L L N L L+ L L+L N L L E
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116
Query: 117 TKLEVL 122
+ +
Sbjct: 117 PSVSSI 122
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 39.3 bits (91), Expect = 2e-04
Identities = 22/104 (21%), Positives = 35/104 (33%), Gaps = 24/104 (23%)
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP---------------------ES 538
L L+ LT + + L + L+LSHN L P +
Sbjct: 3 LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60
Query: 539 FSNLKMIESLDLSHNKLNG-QIPPQLTELHSLSKFDVSYNDLSG 581
+NL ++ L L +N+L L L ++ N L
Sbjct: 61 VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.5 bits (89), Expect = 4e-04
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 3/107 (2%)
Query: 72 KVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSG 131
+VL L + +L V+ + L + +LDLSHN+L P L LEVL ++N+
Sbjct: 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALEN 57
Query: 132 FQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG 178
+ L L + +N + P+L +N+ NS
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 38.2 bits (88), Expect = 6e-04
Identities = 26/108 (24%), Positives = 39/108 (36%), Gaps = 5/108 (4%)
Query: 312 QILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR 371
++L ++ +L+ + L V HL L N L P + LE L DN
Sbjct: 1 RVLHLAHKDLT-VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENV 58
Query: 372 IPHQINEHSNLRALLLRGNYLQG-PIPHQLCQLRKLSIMDLSHNRLNG 418
+ LLL N LQ L +L +++L N L
Sbjct: 59 DGVANLPRL--QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 0.001
Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 4/106 (3%)
Query: 218 LQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHI 277
L L++ + + + L + L L +N + L L VL S+N L
Sbjct: 3 LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNALENVD 59
Query: 278 PSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSG 323
+L + L + + L +L++ N+L
Sbjct: 60 GVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.002
Identities = 23/103 (22%), Positives = 43/103 (41%), Gaps = 5/103 (4%)
Query: 265 VLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGS 324
VL +++ L+ + + + L +S N L P L L++L S+N +
Sbjct: 2 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA-LEN 57
Query: 325 MISTLNLSSVEHLYLQSNAL-GGSIPNTIFRGSALETLDLRDN 366
+ NL ++ L L +N L + + L L+L+ N
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 100
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 36.6 bits (84), Expect = 0.002
Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 121 VLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180
VL+L + + + LD+S N P L L+ + S N+
Sbjct: 2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDNAL--EN 57
Query: 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNF 225
+ + L+ L + +N+ + P+ +C L L L N+
Sbjct: 58 VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 4e-04
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 2/111 (1%)
Query: 499 GLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNG 557
GL + + D + +N+ L + + + L + +L + + L
Sbjct: 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 558 QIPPQLTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPI 608
P LS+ ++S+N L Q + E GN C +
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL 121
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.1 bits (84), Expect = 0.002
Identities = 14/134 (10%), Positives = 36/134 (26%)
Query: 179 NIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTR 238
+ + + L L + + + L + L L + + + R
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLE 298
L L L N + S ++ N W+ + + + + L+
Sbjct: 82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQ 141
Query: 299 GNIPVQFNNLAILQ 312
+ ++
Sbjct: 142 CHGQGPLAHMPNAS 155
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.3 bits (92), Expect = 4e-04
Identities = 39/221 (17%), Positives = 58/221 (26%), Gaps = 5/221 (2%)
Query: 78 NCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWL--LENNTKLEVLYLTNNSFSGFQLT 135
+ IP+ L N L KL + K+E+ +
Sbjct: 17 ESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 74
Query: 136 SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDV 195
S L + I N + LP L + IS + LLD+
Sbjct: 75 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 134
Query: 196 SS-NKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIK 254
S V F L L+ N + DNN+
Sbjct: 135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPN 194
Query: 255 DGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKN 295
D +S ++LDIS + + N L S
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL 235
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.2 bits (85), Expect = 0.002
Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 6/113 (5%)
Query: 506 KLTGDIPSEICDLQN---IHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQ 562
KLT ++ + N L+L + I + L +++D S N++ +
Sbjct: 2 KLTAELIEQAAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI--RKLDG 58
Query: 563 LTELHSLSKFDVSYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCTNL 615
L L V+ N + +Q N L +L
Sbjct: 59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASL 111
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 25/237 (10%), Positives = 68/237 (28%), Gaps = 13/237 (5%)
Query: 316 ISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQ 375
I++ + L++ + + + ++ + TL
Sbjct: 3 ITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGV--TTIEG 58
Query: 376 INEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSR 435
+ +NL L L+ N + P + + + + +I + ++
Sbjct: 59 VQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ 118
Query: 436 YLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILD 495
+ + + T L G+ + + +
Sbjct: 119 ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTL 178
Query: 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSH 552
NK++ P + L N+ ++L +N +S P +N + + L++
Sbjct: 179 KA-----DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.9 bits (84), Expect = 0.004
Identities = 25/172 (14%), Positives = 60/172 (34%), Gaps = 9/172 (5%)
Query: 380 SNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSG 439
+++ ++ + ++ + L ++ + L+ N+L + NL +L
Sbjct: 46 NSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIK--PLANLKNLGW--LFLDE 99
Query: 440 FVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAG 499
+ + + S + I+G Q+E ++ N+ +
Sbjct: 100 NKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLD 159
Query: 500 LDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 551
+ DI + L + L LS N +S + + LK ++ L+L
Sbjct: 160 TLSLEDNQISDIV-PLAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELF 208
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 688 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.96 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.91 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.89 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.87 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.8 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.79 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.73 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.72 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.72 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.7 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.67 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.66 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.65 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.63 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.51 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.49 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.47 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.46 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.42 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.4 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.35 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.34 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.2 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.2 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.28 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.14 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.65 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.65 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.15 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.95 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=1.2e-31 Score=270.10 Aligned_cols=258 Identities=34% Similarity=0.548 Sum_probs=200.9
Q ss_pred CCCEEEccCCcCCC--CCchhhhCCcCCcEEEccc-cccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEe
Q 005619 262 ELMVLDISNNHLSG--HIPSWMGNFSNLYILSMSK-NLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLY 338 (688)
Q Consensus 262 ~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 338 (688)
+++.|+|+++.+.+ .+|..++++++|++|++++ |.+.|.+|..+.++++ |++|+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~-----------------------L~~L~ 107 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-----------------------LHYLY 107 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTT-----------------------CSEEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccc-----------------------cchhh
Confidence 45556666665554 2445555555555555553 4455555555555444 55555
Q ss_pred eecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCC-CEEEccCCcCc
Q 005619 339 LQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKL-SIMDLSHNRLN 417 (688)
Q Consensus 339 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~ls~n~l~ 417 (688)
+++|++.+..+..+..+..|+.+++++|.+.+.+|..+..++.++.+++++|.+.+.+|..+..+..+ +.+++++|+++
T Consensus 108 Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~ 187 (313)
T d1ogqa_ 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187 (313)
T ss_dssp EEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred hccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence 55555555555566667778888888888877888888888888888888888888888888887765 88999999998
Q ss_pred cccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccc
Q 005619 418 GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYM 497 (688)
Q Consensus 418 ~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 497 (688)
+..|..+.++ ..
T Consensus 188 ~~~~~~~~~l--------------------------------------------------------------------~~ 199 (313)
T d1ogqa_ 188 GKIPPTFANL--------------------------------------------------------------------NL 199 (313)
T ss_dssp EECCGGGGGC--------------------------------------------------------------------CC
T ss_pred cccccccccc--------------------------------------------------------------------cc
Confidence 8777665432 23
Q ss_pred cEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCC
Q 005619 498 AGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 498 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 577 (688)
..++++++...+.+|..+..+++++.+++++|.+++.+| .++.+++|+.|||++|+++|.+|..+.++++|++|||++|
T Consensus 200 ~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N 278 (313)
T d1ogqa_ 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp SEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCC
Confidence 458999999999999999999999999999999997665 6888999999999999999999999999999999999999
Q ss_pred cCccCCCCCcccCCcCccccCCCCCCCCCCCCCCC
Q 005619 578 DLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSC 612 (688)
Q Consensus 578 ~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p~~~~C 612 (688)
+++|.+|....+..+....+.+|+.+||.|+. .|
T Consensus 279 ~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c 312 (313)
T d1ogqa_ 279 NLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp EEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence 99999998888889999999999999998864 56
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.96 E-value=2.7e-30 Score=260.16 Aligned_cols=251 Identities=27% Similarity=0.391 Sum_probs=171.7
Q ss_pred CCCCCEEeccCCcCCC--cccccccCCCCCCEEEccC-CcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCc
Q 005619 236 LTRLLFLYLDNNHFSG--KIKDGLLRSSELMVLDISN-NHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQ 312 (688)
Q Consensus 236 l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 312 (688)
..+++.|+|+++.+.+ .+|..++.+++|++|+|++ |.++|.+|..++++++|++|++++|++.+..+..+..+..|+
T Consensus 49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~ 128 (313)
T d1ogqa_ 49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred cEEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence 3479999999999987 4788999999999999997 889999999999999999999999999988888888888888
Q ss_pred EEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCc-cEEeccCCc
Q 005619 313 ILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNL-RALLLRGNY 391 (688)
Q Consensus 313 ~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~n~ 391 (688)
.+++++|.+.+..+ ..+..++.++.+++++|.+.+.+|..+..+.++ +.+++++|+
T Consensus 129 ~l~l~~N~~~~~~p-----------------------~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~ 185 (313)
T d1ogqa_ 129 TLDFSYNALSGTLP-----------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp EEECCSSEEESCCC-----------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred ccccccccccccCc-----------------------hhhccCcccceeecccccccccccccccccccccccccccccc
Confidence 88888776655444 444444445555555555544455444444443 455555555
Q ss_pred CCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCC
Q 005619 392 LQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRS 471 (688)
Q Consensus 392 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 471 (688)
+++..|..+..+..+ .++++++...|.+|..+..
T Consensus 186 l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~--------------------------------------------- 219 (313)
T d1ogqa_ 186 LTGKIPPTFANLNLA-FVDLSRNMLEGDASVLFGS--------------------------------------------- 219 (313)
T ss_dssp EEEECCGGGGGCCCS-EEECCSSEEEECCGGGCCT---------------------------------------------
T ss_pred ccccccccccccccc-ccccccccccccccccccc---------------------------------------------
Confidence 555555555444332 4555555555544443221
Q ss_pred CCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCC
Q 005619 472 LGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLS 551 (688)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 551 (688)
++.++.+++++|.+++.+| .++.+++|+.|+|++|+++|.+|+.|+++++|++|||+
T Consensus 220 ----------------------~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls 276 (313)
T d1ogqa_ 220 ----------------------DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276 (313)
T ss_dssp ----------------------TSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred ----------------------ccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence 3345556666666655443 45666677777777777777777777777777777777
Q ss_pred CCcccccCCcCCCCCCCCCEEecCCCcC
Q 005619 552 HNKLNGQIPPQLTELHSLSKFDVSYNDL 579 (688)
Q Consensus 552 ~N~l~~~~p~~l~~l~~L~~L~ls~N~l 579 (688)
+|+++|.+|+ +.++++|+.+++++|+.
T Consensus 277 ~N~l~g~iP~-~~~L~~L~~l~l~~N~~ 303 (313)
T d1ogqa_ 277 FNNLCGEIPQ-GGNLQRFDVSAYANNKC 303 (313)
T ss_dssp SSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred CCcccccCCC-cccCCCCCHHHhCCCcc
Confidence 7777776663 46667777777777763
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=1.9e-27 Score=246.97 Aligned_cols=356 Identities=20% Similarity=0.235 Sum_probs=210.9
Q ss_pred ECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCC
Q 005619 98 DLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFE 177 (688)
Q Consensus 98 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 177 (688)
.++.+.+++.+.. +.+.+|++|+++++.++++.....+++|++|++++|+++ .++. + ..+++|++|++++|.+.
T Consensus 28 ~l~~~~~~~~~~~---~~l~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~-~l~~-l-~~L~~L~~L~L~~n~i~ 101 (384)
T d2omza2 28 VLGKTNVTDTVSQ---TDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIA 101 (384)
T ss_dssp HTTCSSTTSEECH---HHHTTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccCH---HHhCCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCC-CCcc-c-cCCcccccccccccccc
Confidence 4555566655443 245677777777777766543345566666666666665 3332 2 24566666666666555
Q ss_pred cccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccc
Q 005619 178 GNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGL 257 (688)
Q Consensus 178 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 257 (688)
+.. .++.+++|+.|+++++.+++. +. ......+.......+.+.........
T Consensus 102 ~i~--~l~~l~~L~~L~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------- 153 (384)
T d2omza2 102 DIT--PLANLTNLTGLTLFNNQITDI-DP--LKNLTNLNRLELSSNTISDISALSGL----------------------- 153 (384)
T ss_dssp CCG--GGTTCTTCCEEECCSSCCCCC-GG--GTTCTTCSEEEEEEEEECCCGGGTTC-----------------------
T ss_pred ccc--ccccccccccccccccccccc-cc--cccccccccccccccccccccccccc-----------------------
Confidence 332 255555555555555555421 11 12233444444444443322111111
Q ss_pred cCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceE
Q 005619 258 LRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHL 337 (688)
Q Consensus 258 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 337 (688)
............ .....+.............|... ....+..+++++.+++++|.+++..+. ..+++|++|
T Consensus 154 -~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~~-~~~~~L~~L 224 (384)
T d2omza2 154 -TSLQQLSFGNQV-----TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITPL-GILTNLDEL 224 (384)
T ss_dssp -TTCSEEEEEESC-----CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGGG-GGCTTCCEE
T ss_pred -cccccccccccc-----chhhhhccccccccccccccccc--cccccccccccceeeccCCccCCCCcc-cccCCCCEE
Confidence 111111111110 11112223333333333333332 233445566666666666666654432 245567777
Q ss_pred eeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 338 YLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 338 ~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
++++|.+++ + +.+..+++|+.|++++|++++.. .+..+++|++|++++|++.+.. .+..++.++.+++++|.++
T Consensus 225 ~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~ 298 (384)
T d2omza2 225 SLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLE 298 (384)
T ss_dssp ECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCS
T ss_pred ECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccccccccccc
Confidence 777776653 2 24666777888888888776543 3677788888888888887543 3667788888888888876
Q ss_pred cccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccc
Q 005619 418 GSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYM 497 (688)
Q Consensus 418 ~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 497 (688)
+. + .+ ..++.+
T Consensus 299 ~~-~-~~-------------------------------------------------------------------~~~~~l 309 (384)
T d2omza2 299 DI-S-PI-------------------------------------------------------------------SNLKNL 309 (384)
T ss_dssp CC-G-GG-------------------------------------------------------------------GGCTTC
T ss_pred cc-c-cc-------------------------------------------------------------------chhccc
Confidence 41 1 11 114667
Q ss_pred cEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEecCCC
Q 005619 498 AGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDVSYN 577 (688)
Q Consensus 498 ~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N 577 (688)
+.|++++|++++.. .+..+++|+.|++++|++++ ++ .++++++|++|++++|++++.+| +.++++|++|++++|
T Consensus 310 ~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 310 TYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp SEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 88899999888653 37888999999999999984 44 58889999999999999997655 788999999999987
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.96 E-value=8e-27 Score=242.24 Aligned_cols=355 Identities=22% Similarity=0.289 Sum_probs=225.3
Q ss_pred ECCCCCCCC-cchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCC
Q 005619 75 SLPNCNLGV-IPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTG 153 (688)
Q Consensus 75 ~l~~n~l~~-lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~ 153 (688)
.+..+.++. ++ ...+.+|++|+++++.++ .+.. ++.+++|++|++++|++++++....+++|++|++++|++.
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~-~l~g--l~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~- 101 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIA- 101 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCC-Cccc--cccCCCCCEEeCcCCcCCCCccccCCcccccccccccccc-
Confidence 566666644 33 345678999999999998 5543 4689999999999999999876678999999999999998
Q ss_pred CCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccc
Q 005619 154 KLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNY 233 (688)
Q Consensus 154 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~ 233 (688)
.++. + ..+++|+.|+++++.+++..+ ......+.......+.+.. +.... .....+........ .....+
T Consensus 102 ~i~~-l-~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~-~~~~~--~~~~~~~~~~~~~~---~~~~~~ 171 (384)
T d2omza2 102 DITP-L-ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISALS--GLTSLQQLSFGNQV---TDLKPL 171 (384)
T ss_dssp CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGGGT--TCTTCSEEEEEESC---CCCGGG
T ss_pred cccc-c-ccccccccccccccccccccc--ccccccccccccccccccc-ccccc--cccccccccccccc---chhhhh
Confidence 4543 3 379999999999999886533 4456678888888777652 22211 11122222211111 112223
Q ss_pred cCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcE
Q 005619 234 VNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQI 313 (688)
Q Consensus 234 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 313 (688)
...+.........+... .......+++++.+++++|.+++..| +..+++|++|++++|.++.. ..+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l----- 240 (384)
T d2omza2 172 ANLTTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASL----- 240 (384)
T ss_dssp TTCTTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGC-----
T ss_pred ccccccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcc-----
Confidence 33334444444444332 22334445555666666655554332 23345555555555554421 233444
Q ss_pred EEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCC
Q 005619 314 LDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQ 393 (688)
Q Consensus 314 L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 393 (688)
++|+.+++++|.+++.. .+..+++|++|++++|++++.. .+..++.++.+.+..|.++
T Consensus 241 ------------------~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~ 298 (384)
T d2omza2 241 ------------------TNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLE 298 (384)
T ss_dssp ------------------TTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCS
T ss_pred ------------------cccchhccccCccCCCC--cccccccCCEeeccCcccCCCC--ccccccccccccccccccc
Confidence 44555555555544322 2455666777777777665432 3566777777777777776
Q ss_pred CCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCC
Q 005619 394 GPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLG 473 (688)
Q Consensus 394 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 473 (688)
+. ..+..+++++.|++++|++++..| +.
T Consensus 299 ~~--~~~~~~~~l~~L~ls~n~l~~l~~--l~------------------------------------------------ 326 (384)
T d2omza2 299 DI--SPISNLKNLTYLTLYFNNISDISP--VS------------------------------------------------ 326 (384)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCSCCGG--GG------------------------------------------------
T ss_pred cc--cccchhcccCeEECCCCCCCCCcc--cc------------------------------------------------
Confidence 42 346677778888888887764322 11
Q ss_pred cceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCC
Q 005619 474 TQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHN 553 (688)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 553 (688)
.+++|++|++++|++++ ++ .++.+++|+.|++++|++++.+| ++++++|+.|+|++|
T Consensus 327 -------------------~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 327 -------------------SLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp -------------------GCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred -------------------cCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 15677888888888874 33 58888999999999999987655 788899999999887
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=1.6e-24 Score=216.86 Aligned_cols=266 Identities=20% Similarity=0.238 Sum_probs=197.4
Q ss_pred CCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccC
Q 005619 239 LLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISE 318 (688)
Q Consensus 239 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 318 (688)
.+.++-++.+++ .+|..+ .+++++|++++|+++...+..|.++++|++|++++|.+....|..|.++++|++|++++
T Consensus 12 ~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~ 88 (305)
T d1xkua_ 12 LRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88 (305)
T ss_dssp TTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence 445555555555 334443 24677777777777755555677777777777777777766677777777777777777
Q ss_pred CcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCC--CcCchhhhcCCCccEEeccCCcCCCCC
Q 005619 319 NNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFF--GRIPHQINEHSNLRALLLRGNYLQGPI 396 (688)
Q Consensus 319 n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~ 396 (688)
|+++..+.. ....++.|++.+|.+.+..+..+.....+..++...|... ...+..+..+++|+.+++++|.+.. +
T Consensus 89 n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l 165 (305)
T d1xkua_ 89 NQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-I 165 (305)
T ss_dssp SCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-C
T ss_pred CccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-c
Confidence 777655433 2356777777888777555555666677788888877542 2345567888899999999998874 4
Q ss_pred chhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcce
Q 005619 397 PHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQV 476 (688)
Q Consensus 397 ~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 476 (688)
|..+ +++|+.|++++|..++..+..+.+
T Consensus 166 ~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-------------------------------------------------- 193 (305)
T d1xkua_ 166 PQGL--PPSLTELHLDGNKITKVDAASLKG-------------------------------------------------- 193 (305)
T ss_dssp CSSC--CTTCSEEECTTSCCCEECTGGGTT--------------------------------------------------
T ss_pred Cccc--CCccCEEECCCCcCCCCChhHhhc--------------------------------------------------
Confidence 4433 578999999999888666654432
Q ss_pred EEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 477 EVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 477 ~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
++.++.|++++|.+++..+..+.++++|++|+|++|+|+ .+|..|.++++|++|+|++|+|+
T Consensus 194 -----------------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 194 -----------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp -----------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred -----------------cccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence 456788999999999888999999999999999999998 67889999999999999999999
Q ss_pred ccCCcCC------CCCCCCCEEecCCCcCc
Q 005619 557 GQIPPQL------TELHSLSKFDVSYNDLS 580 (688)
Q Consensus 557 ~~~p~~l------~~l~~L~~L~ls~N~l~ 580 (688)
......| ..+++|+.|++++|++.
T Consensus 256 ~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred ccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 6544443 45688999999999986
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=6.7e-24 Score=212.18 Aligned_cols=222 Identities=21% Similarity=0.278 Sum_probs=134.6
Q ss_pred CCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEc
Q 005619 189 GLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDI 268 (688)
Q Consensus 189 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 268 (688)
++++|++++|+++ .++...|.++++|++|++++|.+....+..|.++++|++|++++|+++. +|..+ ...++.|++
T Consensus 32 ~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~~--~~~l~~L~~ 107 (305)
T d1xkua_ 32 DTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKM--PKTLQELRV 107 (305)
T ss_dssp TCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSC--CTTCCEEEC
T ss_pred CCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc-Cccch--hhhhhhhhc
Confidence 3444444444444 4444334444455555555555544444445555555555555555552 22221 245666666
Q ss_pred cCCcCCCCCchhhhCCcCCcEEEccccccC--CCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCcccc
Q 005619 269 SNNHLSGHIPSWMGNFSNLYILSMSKNLLE--GNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGG 346 (688)
Q Consensus 269 s~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~ 346 (688)
++|.+.+..+..+.....++.++...|... ...+..+..+++|+.+++++|.+...... .+++|++|++++|...+
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~--~~~~L~~L~l~~n~~~~ 185 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG--LPPSLTELHLDGNKITK 185 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS--CCTTCSEEECTTSCCCE
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc--cCCccCEEECCCCcCCC
Confidence 666666555555555666666666655332 23344566677777777777776654322 24667777777777766
Q ss_pred CCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCc
Q 005619 347 SIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLN 417 (688)
Q Consensus 347 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 417 (688)
..+..+..++.++.|++++|++.+..+..+..+++|++|+|++|+++ .+|.++..+++|++|++++|+|+
T Consensus 186 ~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence 66667777777777777777777666677777777777777777776 45667777777777777777776
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=4.3e-25 Score=218.26 Aligned_cols=209 Identities=21% Similarity=0.198 Sum_probs=161.3
Q ss_pred CCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCc-CCcCCCcCchhhhcCCCccEEec
Q 005619 310 ILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLR-DNYFFGRIPHQINEHSNLRALLL 387 (688)
Q Consensus 310 ~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L 387 (688)
.+++|+|++|+++...+..+ ++++|++|++++|.+....+..+..+..++.++.. .+.+....+..++++++|++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 34555555555555444444 55555555555555554445555556666666654 45555555677888888888888
Q ss_pred cCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCC
Q 005619 388 RGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGI 467 (688)
Q Consensus 388 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 467 (688)
++|.+....+..+...++|+.+++++|++++..+..+..
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~----------------------------------------- 151 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD----------------------------------------- 151 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCcccccccccccchhcccchhhhccccccccChhHhcc-----------------------------------------
Confidence 888887667777778888888888888887544433322
Q ss_pred CCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCe
Q 005619 468 DGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIES 547 (688)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 547 (688)
++.|+.|++++|++++..+.+|.++++|+.+++++|++++..|..|+++++|++
T Consensus 152 --------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~ 205 (284)
T d1ozna_ 152 --------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205 (284)
T ss_dssp --------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred --------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhccc
Confidence 456888999999999888899999999999999999999999999999999999
Q ss_pred EeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCCC
Q 005619 548 LDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIPD 585 (688)
Q Consensus 548 L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~ 585 (688)
||+++|++++..|..|.++++|++|++++|++.|.|+.
T Consensus 206 L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred ccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence 99999999999889999999999999999999999874
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2e-23 Score=206.14 Aligned_cols=207 Identities=23% Similarity=0.256 Sum_probs=144.2
Q ss_pred CCCEEEcccCcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEcc-CCcCCCCCchhhhCCcCCcEEEc
Q 005619 214 SLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS-NNHLSGHIPSWMGNFSNLYILSM 292 (688)
Q Consensus 214 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls-~n~l~~~~~~~~~~l~~L~~L~l 292 (688)
++++|+|++|.++...+..|.++++|++|++++|.+....+..+.....++.++.. .+.+....+..|+++++|++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 44555555555554444455555555566665555555555555555566665543 34454455556666666777777
Q ss_pred cccccCCCCcccccCCCCCcEEEccCCcCcccccccc-ccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCc
Q 005619 293 SKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTL-NLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGR 371 (688)
Q Consensus 293 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~ 371 (688)
++|.+....+..+...++|+.+++++|.+++..+..+ .+++|++|++++|.+++..+..+..+++|+.+++++|++++.
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i 192 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence 7766665555566666677777777777766665555 566777777777777766667777888888888888888888
Q ss_pred CchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCcccc
Q 005619 372 IPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSI 420 (688)
Q Consensus 372 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 420 (688)
.|..|..+++|++|++++|++.+..+..|..+++|++|++++|++.+..
T Consensus 193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C 241 (284)
T d1ozna_ 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence 8888888889999999999998888888888999999999999887543
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=7.8e-23 Score=199.48 Aligned_cols=205 Identities=22% Similarity=0.165 Sum_probs=159.6
Q ss_pred CCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEe
Q 005619 307 NLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALL 386 (688)
Q Consensus 307 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 386 (688)
....+.+++.+++.++..++.. .+++++|+|++|.+++..+..|..+++|++|++++|+++. ++ .++.+++|++|+
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~ 83 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLGTLD 83 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCCEEE
T ss_pred ccCCCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-cc-cccccccccccc
Confidence 3344555666666666543322 2456777777777765445567777888888888888753 33 356788888888
Q ss_pred ccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCC
Q 005619 387 LRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDG 466 (688)
Q Consensus 387 L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 466 (688)
+++|++++ .+..+..+++|+.|++++|.+.+..+..+.
T Consensus 84 Ls~N~l~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------------------------------------- 121 (266)
T d1p9ag_ 84 LSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALR----------------------------------------- 121 (266)
T ss_dssp CCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTT-----------------------------------------
T ss_pred cccccccc-cccccccccccccccccccccceeeccccc-----------------------------------------
Confidence 88888874 566778888999999998887643332221
Q ss_pred CCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCC
Q 005619 467 IDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIE 546 (688)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 546 (688)
.+..++.|++++|.+++..+..+..+++|+.|++++|++++..+..|+.+++|+
T Consensus 122 --------------------------~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~ 175 (266)
T d1p9ag_ 122 --------------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175 (266)
T ss_dssp --------------------------TCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCC
T ss_pred --------------------------cccccccccccccccceeccccccccccchhcccccccccccCccccccccccc
Confidence 156788899999999988888899999999999999999988889999999999
Q ss_pred eEeCCCCcccccCCcCCCCCCCCCEEecCCCcCccCCC
Q 005619 547 SLDLSHNKLNGQIPPQLTELHSLSKFDVSYNDLSGPIP 584 (688)
Q Consensus 547 ~L~Ls~N~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 584 (688)
+|||++|+|+ .+|..+..+++|+.|+|++|++.|.|.
T Consensus 176 ~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~ 212 (266)
T d1p9ag_ 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCE 212 (266)
T ss_dssp EEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred eeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcc
Confidence 9999999999 788888899999999999999999874
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=1.4e-21 Score=190.49 Aligned_cols=201 Identities=25% Similarity=0.227 Sum_probs=144.3
Q ss_pred CCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEc
Q 005619 67 PTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDI 146 (688)
Q Consensus 67 ~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~l 146 (688)
+...+.+++.+++.++++|..+. +++++|+|++|+++ .+|...+.++++|++|++++|+++.++....+++|++|++
T Consensus 8 ~~~~~~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L 84 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84 (266)
T ss_dssp CSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred ccCCCeEEEccCCCCCeeCcCcC--cCCCEEECcCCcCC-CcCHHHhhcccccccccccccccccccccccccccccccc
Confidence 34456667888888888886553 47899999999988 5666666788899999999988887655557777888888
Q ss_pred cCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCC
Q 005619 147 SSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFD 226 (688)
Q Consensus 147 s~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~ 226 (688)
++|+++ ..+..+ ..+++|+.|++++|.+....+..+..+.++++|++++|.+. .++...+..+++++.+++++|+++
T Consensus 85 s~N~l~-~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~-~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 85 SHNQLQ-SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp CSSCCS-SCCCCT-TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECTTSCCS
T ss_pred cccccc-cccccc-ccccccccccccccccceeeccccccccccccccccccccc-eeccccccccccchhccccccccc
Confidence 887776 344433 36777777777777777666666677777777777777776 566666666777777777777777
Q ss_pred CcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCC
Q 005619 227 GQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLS 274 (688)
Q Consensus 227 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 274 (688)
+..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|.+.
T Consensus 162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~ 208 (266)
T d1p9ag_ 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (266)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence 666666666777777777777766 55555666666777777766654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3e-21 Score=204.77 Aligned_cols=380 Identities=19% Similarity=0.155 Sum_probs=220.5
Q ss_pred CcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCc----ccchhhhcCCCCCEEEccCCcCcccc----CchhhcC
Q 005619 140 GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEG----NIPSSIGKMQGLRLLDVSSNKFAGEL----SQSPVTN 211 (688)
Q Consensus 140 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~ 211 (688)
+|++||+++|++++..-..+...++++++|+|++|.++. .+...+..+++|++|+|++|.++... .......
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 466777777777643333344467778888888887763 23445667788888888888775211 1111112
Q ss_pred CCCCCEEEcccCcCCCc----CcccccCCCCCCEEeccCCcCCCcccccc-----cCCCCCCEEEccCCcCCCCC----c
Q 005619 212 CFSLEWLQLSNNNFDGQ----IFPNYVNLTRLLFLYLDNNHFSGKIKDGL-----LRSSELMVLDISNNHLSGHI----P 278 (688)
Q Consensus 212 l~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~~----~ 278 (688)
..+|++|++++|.++.. ++..+..+++|++|++++|.+.......+ .................... .
T Consensus 83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (460)
T d1z7xw1 83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162 (460)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccc
Confidence 34688888888877643 23445667788888888877654222111 11223334444333322111 1
Q ss_pred hhhhCCcCCcEEEccccccCCCC----ccccc-CCCCCcEEEccCCcCccccccc----c-ccCccceEeeecCccccC-
Q 005619 279 SWMGNFSNLYILSMSKNLLEGNI----PVQFN-NLAILQILDISENNLSGSMIST----L-NLSSVEHLYLQSNALGGS- 347 (688)
Q Consensus 279 ~~~~~l~~L~~L~l~~n~l~~~~----~~~l~-~l~~L~~L~Ls~n~l~~~~~~~----~-~~~~L~~L~L~~n~l~~~- 347 (688)
..+.....++.++++++...... ...+. .-.....+++..+.+....... . ..+.++.+++.+|.+...
T Consensus 163 ~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~ 242 (460)
T d1z7xw1 163 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 242 (460)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccc
Confidence 12234566777777766543211 01111 1234556777666554332211 1 456677777777765321
Q ss_pred ----CchhccCCCCccEEeCcCCcCCCc----CchhhhcCCCccEEeccCCcCCCCCchhh-----cCCCCCCEEEccCC
Q 005619 348 ----IPNTIFRGSALETLDLRDNYFFGR----IPHQINEHSNLRALLLRGNYLQGPIPHQL-----CQLRKLSIMDLSHN 414 (688)
Q Consensus 348 ----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~ls~n 414 (688)
..........++.+++++|.+... ....+...+.++.+++++|.++......+ .....|+.+++++|
T Consensus 243 ~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~ 322 (460)
T d1z7xw1 243 MAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 322 (460)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred cchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc
Confidence 222333456788888888876433 22334567778888888887753322221 23457888888888
Q ss_pred cCccccchhhhhhhhcccCCcccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeecccccccccccc
Q 005619 415 RLNGSIPACITNLLFWKVGSRYLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVIL 494 (688)
Q Consensus 415 ~l~~~~p~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 494 (688)
.++......+.++. ...
T Consensus 323 ~l~~~~~~~l~~~~---------------------------------------------------------------~~~ 339 (460)
T d1z7xw1 323 SFTAACCSHFSSVL---------------------------------------------------------------AQN 339 (460)
T ss_dssp CCBGGGHHHHHHHH---------------------------------------------------------------HHC
T ss_pred chhhhhhhhccccc---------------------------------------------------------------ccc
Confidence 77654433333321 113
Q ss_pred ccccEEEccCCcccccC----Chhhh-ccCCCCeeeCCCCcCccC----CCccccCCCCCCeEeCCCCcccccCCcCC--
Q 005619 495 DYMAGLDLSSNKLTGDI----PSEIC-DLQNIHGLNLSHNFLSGS----IPESFSNLKMIESLDLSHNKLNGQIPPQL-- 563 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~~----p~~~~-~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l-- 563 (688)
+.|++|||++|++++.. +..+. ..+.|++|+|++|.|++. +++.+..+++|++|||++|+++......+
T Consensus 340 ~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~ 419 (460)
T d1z7xw1 340 RFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVE 419 (460)
T ss_dssp SSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHH
T ss_pred cchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHH
Confidence 56888999999887542 33332 356789999999998743 44556677889999999998875332222
Q ss_pred --C-CCCCCCEEecCCCcCccC
Q 005619 564 --T-ELHSLSKFDVSYNDLSGP 582 (688)
Q Consensus 564 --~-~l~~L~~L~ls~N~l~~~ 582 (688)
. +...|+.|++++|.+...
T Consensus 420 ~l~~~~~~L~~l~l~~~~~~~~ 441 (460)
T d1z7xw1 420 SVRQPGCLLEQLVLYDIYWSEE 441 (460)
T ss_dssp HHTSTTCCCCEEECTTCCCCHH
T ss_pred HHHhCCCccCEEECCCCCCCHH
Confidence 2 334689999999888653
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.80 E-value=4.7e-17 Score=165.49 Aligned_cols=75 Identities=23% Similarity=0.270 Sum_probs=30.3
Q ss_pred ceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCC
Q 005619 70 QLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSN 149 (688)
Q Consensus 70 ~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n 149 (688)
+|++|++++|+++++|.. ..+|++|++++|+++ .++. -.+.|++|++++|.+..++....+++|++|+++++
T Consensus 59 ~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~ 130 (353)
T d1jl5a_ 59 HLESLVASCNSLTELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 130 (353)
T ss_dssp TCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCcccccc---hhhhhhhhhhhcccc-hhhh----hccccccccccccccccccchhhhccceeeccccc
Confidence 344444444444444432 123444444444443 2221 11234444444444444333333444444444444
Q ss_pred CCC
Q 005619 150 NFT 152 (688)
Q Consensus 150 ~~~ 152 (688)
.+.
T Consensus 131 ~~~ 133 (353)
T d1jl5a_ 131 SLK 133 (353)
T ss_dssp CCS
T ss_pred ccc
Confidence 443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.79 E-value=3.4e-17 Score=166.54 Aligned_cols=304 Identities=24% Similarity=0.260 Sum_probs=207.7
Q ss_pred cceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccC
Q 005619 69 FQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISS 148 (688)
Q Consensus 69 ~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~ 148 (688)
.++++|+++++.++++|+. .++|++|++++|+++ .+|. ...+|+.|++++|+++.++ ...+.|++|++++
T Consensus 38 ~~l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~-~lp~----~~~~L~~L~l~~n~l~~l~--~lp~~L~~L~L~~ 107 (353)
T d1jl5a_ 38 RQAHELELNNLGLSSLPEL---PPHLESLVASCNSLT-ELPE----LPQSLKSLLVDNNNLKALS--DLPPLLEYLGVSN 107 (353)
T ss_dssp HTCSEEECTTSCCSCCCSC---CTTCSEEECCSSCCS-SCCC----CCTTCCEEECCSSCCSCCC--SCCTTCCEEECCS
T ss_pred cCCCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCc-cccc----chhhhhhhhhhhcccchhh--hhccccccccccc
Confidence 3688899999999889863 468999999999998 7785 3578999999999988653 3345799999999
Q ss_pred CCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCc
Q 005619 149 NNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQ 228 (688)
Q Consensus 149 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 228 (688)
|.+. .+|.. ..+++|++|+++++.+... +. ....+..+.+..+.... ...+..++.++.+++++|.....
T Consensus 108 n~l~-~lp~~--~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~---~~~l~~l~~l~~L~l~~n~~~~~ 177 (353)
T d1jl5a_ 108 NQLE-KLPEL--QNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEE---LPELQNLPFLTAIYADNNSLKKL 177 (353)
T ss_dssp SCCS-SCCCC--TTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSS---CCCCTTCTTCCEEECCSSCCSSC
T ss_pred cccc-cccch--hhhccceeecccccccccc-cc---ccccccchhhccccccc---cccccccccceeccccccccccc
Confidence 9988 77753 3689999999999887743 22 24567788887766542 12245678888999988876642
Q ss_pred CcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCC
Q 005619 229 IFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNL 308 (688)
Q Consensus 229 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 308 (688)
.. .....+.+....+.+. ..+ .+..++.|+.+++++|.... .+. ...++..+.+.++.+... +. ..
T Consensus 178 ~~----~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~~~-~~---~~ 243 (353)
T d1jl5a_ 178 PD----LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTDL-PE---LP 243 (353)
T ss_dssp CC----CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSCC-CC---CC
T ss_pred cc----cccccccccccccccc-ccc-cccccccccccccccccccc-ccc---cccccccccccccccccc-cc---cc
Confidence 21 1233456666655554 222 35667888999998887653 332 345677788888776532 22 23
Q ss_pred CCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEecc
Q 005619 309 AILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLR 388 (688)
Q Consensus 309 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 388 (688)
..+...++..+.+.+.... .......++..+.+.+ + ...+++|++|++++|+++ .+|. .+++|+.|+++
T Consensus 244 ~~l~~~~~~~~~~~~l~~l---~~~~~~~~~~~~~~~~-~---~~~~~~L~~L~Ls~N~l~-~lp~---~~~~L~~L~L~ 312 (353)
T d1jl5a_ 244 QSLTFLDVSENIFSGLSEL---PPNLYYLNASSNEIRS-L---CDLPPSLEELNVSNNKLI-ELPA---LPPRLERLIAS 312 (353)
T ss_dssp TTCCEEECCSSCCSEESCC---CTTCCEEECCSSCCSE-E---CCCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECC
T ss_pred ccccccccccccccccccc---cchhcccccccCcccc-c---cccCCCCCEEECCCCccC-cccc---ccCCCCEEECC
Confidence 4566777766655443211 1233455555555542 2 233578999999999885 4554 35788899999
Q ss_pred CCcCCCCCchhhcCCCCCCEEEccCCcCccccch
Q 005619 389 GNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPA 422 (688)
Q Consensus 389 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~ 422 (688)
+|+++ .+|.. +++|++|++++|+++ .+|.
T Consensus 313 ~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~ 341 (353)
T d1jl5a_ 313 FNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD 341 (353)
T ss_dssp SSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred CCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence 99987 45542 467899999999987 5554
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=1.8e-20 Score=198.70 Aligned_cols=389 Identities=19% Similarity=0.098 Sum_probs=211.4
Q ss_pred CCCEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccc----cCCCCCcceeEEECCCCCCCC-----cchhhh
Q 005619 19 SLEYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKI----ENCLPTFQLKVLSLPNCNLGV-----IPNFLL 89 (688)
Q Consensus 19 ~L~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~-----lp~~~~ 89 (688)
+|++||++++++++..+. ..+..++++++|+|++|.+.. ... .++..+++|++|+|++|.++. +...+.
T Consensus 3 ~l~~ld~~~~~i~~~~~~-~l~~~l~~l~~L~L~~~~i~~-~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTE-ARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCH-HHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CCCEEEeeCCcCChHHHH-HHHHhCCCCCEEEeCCCCCCH-HHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHh
Confidence 588999999999863332 456778888888888886532 111 124556677777777776632 111121
Q ss_pred -CCCCCCEEECCCCcCCCCCch---HHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCC
Q 005619 90 -HQFNLKYLDLSHNKLAGNFPT---WLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPK 165 (688)
Q Consensus 90 -~l~~L~~L~Ls~n~l~~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~ 165 (688)
...+|++|++++|++++..-. ..+..+++|++|++++|.+++..... +..........
T Consensus 81 ~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~------------------l~~~l~~~~~~ 142 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQL------------------LCEGLLDPQCR 142 (460)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHH------------------HHHHHTSTTCC
T ss_pred cCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhh------------------hhhcccccccc
Confidence 123577777777766532111 11234566666666666554321100 00000001111
Q ss_pred CCEEEccCCCCCcc----cchhhhcCCCCCEEEccCCcCcccc----CchhhcCCCCCCEEEcccCcCCCcC----cccc
Q 005619 166 LDCMNISKNSFEGN----IPSSIGKMQGLRLLDVSSNKFAGEL----SQSPVTNCFSLEWLQLSNNNFDGQI----FPNY 233 (688)
Q Consensus 166 L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~----~~~~~~~l~~L~~L~L~~n~i~~~~----~~~~ 233 (688)
.............. ....+.....++.++++.+...... .............+++..+.+.... ...+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 222 (460)
T d1z7xw1 143 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 222 (460)
T ss_dssp CCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHH
T ss_pred cccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccc
Confidence 22222222221111 1112233445555555554432110 0001112224445555555443211 1123
Q ss_pred cCCCCCCEEeccCCcCCCc-----ccccccCCCCCCEEEccCCcCCCCC----chhhhCCcCCcEEEccccccCCCCccc
Q 005619 234 VNLTRLLFLYLDNNHFSGK-----IKDGLLRSSELMVLDISNNHLSGHI----PSWMGNFSNLYILSMSKNLLEGNIPVQ 304 (688)
Q Consensus 234 ~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~ 304 (688)
...+.++.+++.+|.+... ..........++.+++++|.+.... ...+...+.++.+++++|.+.......
T Consensus 223 ~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~ 302 (460)
T d1z7xw1 223 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL 302 (460)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH
T ss_pred cccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence 3455666666666654321 1222334566777777777665321 223445667777777777665322221
Q ss_pred c-----cCCCCCcEEEccCCcCcccccccc-----ccCccceEeeecCccccC----Cchhcc-CCCCccEEeCcCCcCC
Q 005619 305 F-----NNLAILQILDISENNLSGSMISTL-----NLSSVEHLYLQSNALGGS----IPNTIF-RGSALETLDLRDNYFF 369 (688)
Q Consensus 305 l-----~~l~~L~~L~Ls~n~l~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~~~-~~~~L~~L~l~~n~l~ 369 (688)
+ .....|+.+++++|.++......+ ..++|++|+|++|.+++. ++..+. ..+.|++|++++|.++
T Consensus 303 l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~ 382 (460)
T d1z7xw1 303 LCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 382 (460)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred hhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCC
Confidence 1 233568888888887775543322 456788888888887643 233333 3567999999999986
Q ss_pred Cc----CchhhhcCCCccEEeccCCcCCCCCchhh----c-CCCCCCEEEccCCcCccccchhhhhh
Q 005619 370 GR----IPHQINEHSNLRALLLRGNYLQGPIPHQL----C-QLRKLSIMDLSHNRLNGSIPACITNL 427 (688)
Q Consensus 370 ~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~-~l~~L~~L~ls~n~l~~~~p~~l~~l 427 (688)
+. +++.+..+++|++|++++|+++......+ . +...|+.|++.+|.+....+..+..+
T Consensus 383 ~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l 449 (460)
T d1z7xw1 383 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449 (460)
T ss_dssp HHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHH
Confidence 53 34556778999999999999875433332 2 34579999999999986666555443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=2.9e-17 Score=155.46 Aligned_cols=204 Identities=18% Similarity=0.202 Sum_probs=129.2
Q ss_pred CEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECC
Q 005619 21 EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLS 100 (688)
Q Consensus 21 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls 100 (688)
..++++.+.+++ .++ +..+.+|+.|++.+|.+. .+ ..+..+++|++|++++|.+..++. +..+++|++++++
T Consensus 22 ~~~~l~~~~~~d-~~~---~~~l~~L~~L~l~~~~i~-~l--~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~ 93 (227)
T d1h6ua2 22 IKIAAGKSNVTD-TVT---QADLDGITTLSAFGTGVT-TI--EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELS 93 (227)
T ss_dssp HHHHTTCSSTTS-EEC---HHHHHTCCEEECTTSCCC-CC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECC
T ss_pred HHHHhCCCCcCC-cCC---HHHcCCcCEEECCCCCCC-cc--hhHhcCCCCcEeecCCceeecccc-ccccccccccccc
Confidence 344555555554 222 344556666666666543 22 235566666677777766655543 5666777777777
Q ss_pred CCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCccc
Q 005619 101 HNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNI 180 (688)
Q Consensus 101 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 180 (688)
+|.++ .++. +.++++|+.++++++...+.......+.++.+.++.+.+... .. + ..+++|++|++++|.+.+.
T Consensus 94 ~n~~~-~i~~--l~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~-~-~~~~~L~~L~l~~n~~~~~- 166 (227)
T d1h6ua2 94 GNPLK-NVSA--IAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNI-SP-L-AGLTNLQYLSIGNAQVSDL- 166 (227)
T ss_dssp SCCCS-CCGG--GTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCC-GG-G-GGCTTCCEEECCSSCCCCC-
T ss_pred ccccc-cccc--ccccccccccccccccccccchhccccchhhhhchhhhhchh-hh-h-ccccccccccccccccccc-
Confidence 77665 4443 346677777777777666554445666677777777766522 22 2 2567788888888777643
Q ss_pred chhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCcccccCCCCCCEEecc
Q 005619 181 PSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIFPNYVNLTRLLFLYLD 245 (688)
Q Consensus 181 ~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~ 245 (688)
..++++++|++|++++|+++ .++. +..+++|++|++++|++++.. .+.++++|+.|+++
T Consensus 167 -~~l~~l~~L~~L~Ls~n~l~-~l~~--l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 167 -TPLANLSKLTTLKADDNKIS-DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp -GGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred -hhhcccccceecccCCCccC-CChh--hcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 23677888888888888776 3432 567788888888888877532 36778888888875
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.73 E-value=3e-17 Score=152.95 Aligned_cols=164 Identities=23% Similarity=0.238 Sum_probs=88.2
Q ss_pred CCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEE
Q 005619 43 LSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVL 122 (688)
Q Consensus 43 l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L 122 (688)
+.+|+.|+++.+.+... ..+..+++|++|++++|+++.++. +..+++|++|++++|+++ .++. +..+++|+.|
T Consensus 45 L~~L~~L~l~~~~i~~l---~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L 117 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSL 117 (210)
T ss_dssp HHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEE
T ss_pred hcCccEEECcCCCCCCc---hhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccc-cccc--cccccccccc
Confidence 34455555555443221 123445555555555555555442 445555555555555555 3332 2355555566
Q ss_pred EccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCcc
Q 005619 123 YLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAG 202 (688)
Q Consensus 123 ~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 202 (688)
++++|.+........+++++.+++++|.++ ..+ .. ..+++|+++++++|++++. + .++++++|++|++++|.++
T Consensus 118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~-~~~-~~-~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~- 191 (210)
T d1h6ta2 118 SLEHNGISDINGLVHLPQLESLYLGNNKIT-DIT-VL-SRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS- 191 (210)
T ss_dssp ECTTSCCCCCGGGGGCTTCCEEECCSSCCC-CCG-GG-GGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-
T ss_pred cccccccccccccccccccccccccccccc-ccc-cc-ccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC-
Confidence 655555554444445555666666666555 222 12 2466666666666666643 2 2666667777777777665
Q ss_pred ccCchhhcCCCCCCEEEcc
Q 005619 203 ELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 203 ~~~~~~~~~l~~L~~L~L~ 221 (688)
.++ .+..+++|++|+++
T Consensus 192 ~l~--~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 192 DLR--ALAGLKNLDVLELF 208 (210)
T ss_dssp BCG--GGTTCTTCSEEEEE
T ss_pred CCh--hhcCCCCCCEEEcc
Confidence 443 24566677777665
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=6.4e-18 Score=155.23 Aligned_cols=92 Identities=24% Similarity=0.359 Sum_probs=76.0
Q ss_pred cccccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEe
Q 005619 494 LDYMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFD 573 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 573 (688)
+++|+.|+|++|.+.+..+..|..+++|+.|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+
T Consensus 53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~ 132 (192)
T d1w8aa_ 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN 132 (192)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccc
Confidence 45677788888888777788888888888888888888877788888888888888888888888888888888888888
Q ss_pred cCCCcCccCCCC
Q 005619 574 VSYNDLSGPIPD 585 (688)
Q Consensus 574 ls~N~l~~~~p~ 585 (688)
|++|++.|.++.
T Consensus 133 L~~N~~~~~~~~ 144 (192)
T d1w8aa_ 133 LASNPFNCNCHL 144 (192)
T ss_dssp CTTCCBCCSGGG
T ss_pred ccccccccccch
Confidence 888888877653
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=6.7e-18 Score=161.92 Aligned_cols=215 Identities=19% Similarity=0.159 Sum_probs=97.1
Q ss_pred eEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCC
Q 005619 72 KVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNF 151 (688)
Q Consensus 72 ~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~ 151 (688)
+.++.++..++++|..+. +++++|++++|+++ .+|...+.++++|++|++++|.+..
T Consensus 11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~-------------------- 67 (242)
T d1xwdc1 11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLE-------------------- 67 (242)
T ss_dssp SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCC--------------------
T ss_pred CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccc--------------------
Confidence 455666666666665442 35677777777666 5555444556666666665555433
Q ss_pred CCCCChhhhhcCCCCCEEEccC-CCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCCcCc
Q 005619 152 TGKLPQNMGIVLPKLDCMNISK-NSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDGQIF 230 (688)
Q Consensus 152 ~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 230 (688)
.++...+..++.++++.+.. |.+....+..|.++++|+++++++|.+....+......+..+..+...++.+....+
T Consensus 68 --~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~ 145 (242)
T d1xwdc1 68 --VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER 145 (242)
T ss_dssp --EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECT
T ss_pred --eeeccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccc
Confidence 23333333455555555432 344444444555555666666655555421111112223333333334444433333
Q ss_pred ccccCCC-CCCEEeccCCcCCCcccccccCCCCCCEE-EccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCC
Q 005619 231 PNYVNLT-RLLFLYLDNNHFSGKIKDGLLRSSELMVL-DISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNL 308 (688)
Q Consensus 231 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L-~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l 308 (688)
..+.+++ .++.|++++|+++...+..+ ...+++.+ ++++|.++...+..|.++++|++|++++|+++...+..|.++
T Consensus 146 ~~~~~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l 224 (242)
T d1xwdc1 146 NSFVGLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 224 (242)
T ss_dssp TSSTTSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred cccccccccceeeecccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence 3333332 44445555554443222222 22232222 234444443333334444444444444444443333333333
Q ss_pred CCCc
Q 005619 309 AILQ 312 (688)
Q Consensus 309 ~~L~ 312 (688)
++|+
T Consensus 225 ~~L~ 228 (242)
T d1xwdc1 225 KKLR 228 (242)
T ss_dssp CEEE
T ss_pred cccc
Confidence 3333
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.72 E-value=1.3e-16 Score=150.96 Aligned_cols=189 Identities=23% Similarity=0.302 Sum_probs=100.6
Q ss_pred CCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEE
Q 005619 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISL 144 (688)
Q Consensus 65 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L 144 (688)
.+.+.+|++|++.+|.+++++ .+.++++|++|++++|++++ ++. +..+++|+++++++|.++.++....+++|+.+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~-~~~--l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l 112 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeec-ccc--cccccccccccccccccccccccccccccccc
Confidence 344566777777777776664 46777777777777777763 322 35667777777777766655444455555555
Q ss_pred EccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCc
Q 005619 145 DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNN 224 (688)
Q Consensus 145 ~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 224 (688)
+++++...+ ++. + ...+.++.+.++.+.+... ..+..+++|++|++ ++|.
T Consensus 113 ~l~~~~~~~-~~~-~-~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l-------------------------~~n~ 162 (227)
T d1h6ua2 113 DLTSTQITD-VTP-L-AGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSI-------------------------GNAQ 162 (227)
T ss_dssp ECTTSCCCC-CGG-G-TTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEEC-------------------------CSSC
T ss_pred ccccccccc-cch-h-ccccchhhhhchhhhhchh--hhhccccccccccc-------------------------cccc
Confidence 555555442 111 1 1244455555544444322 12344444444444 4444
Q ss_pred CCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEcc
Q 005619 225 FDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMS 293 (688)
Q Consensus 225 i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~ 293 (688)
+... ..+.++++|++|++++|++++. + .+..+++|++|++++|++++.. .++++++|++|+++
T Consensus 163 ~~~~--~~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 163 VSDL--TPLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred cccc--hhhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 4321 2244455555555555555432 1 2445555555555555555322 25555666666554
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.72 E-value=5.2e-18 Score=155.84 Aligned_cols=61 Identities=31% Similarity=0.433 Sum_probs=29.5
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCccc
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLN 556 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 556 (688)
.|+.|+|++|++++..|.+|.++++|++|+|++|+|++..|+.|..+++|++|+|++|.+.
T Consensus 79 ~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 79 HIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence 3444444444444444444444555555555555555444444455555555555555444
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=1.5e-16 Score=146.78 Aligned_cols=162 Identities=24% Similarity=0.286 Sum_probs=89.7
Q ss_pred cCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcE
Q 005619 42 NLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEV 121 (688)
Q Consensus 42 ~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 121 (688)
.+.+++.|+++++.+.. + ..+..+++|++|++++|+++.++. +.++++|++|++++|.+. .++. ++++++|+.
T Consensus 38 ~l~~l~~L~l~~~~i~~-l--~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~ 110 (199)
T d2omxa2 38 DLDQVTTLQADRLGIKS-I--DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-DITP--LANLTNLTG 110 (199)
T ss_dssp HHTTCCEEECTTSCCCC-C--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred HhcCCCEEECCCCCCCC-c--cccccCCCcCcCccccccccCccc-ccCCcccccccccccccc-cccc--ccccccccc
Confidence 34455555555554321 1 124445555555565555555543 555566666666666554 3332 345566666
Q ss_pred EEccCCCCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCc
Q 005619 122 LYLTNNSFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFA 201 (688)
Q Consensus 122 L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 201 (688)
|++++|..........+++|+.|++++|++. .++. + ..+++|+.|++.+|++++. +.++++++|++|++++|+++
T Consensus 111 L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~-l-~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i~ 185 (199)
T d2omxa2 111 LTLFNNQITDIDPLKNLTNLNRLELSSNTIS-DISA-L-SGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKVS 185 (199)
T ss_dssp EECCSSCCCCCGGGTTCTTCSEEECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred ccccccccccccccchhhhhHHhhhhhhhhc-cccc-c-cccccccccccccccccCC--ccccCCCCCCEEECCCCCCC
Confidence 6666665555444445566666666666655 3332 2 2566777777777766643 23666777777777777765
Q ss_pred cccCchhhcCCCCCCEE
Q 005619 202 GELSQSPVTNCFSLEWL 218 (688)
Q Consensus 202 ~~~~~~~~~~l~~L~~L 218 (688)
.++ .+..+++|++|
T Consensus 186 -~i~--~l~~L~~L~~L 199 (199)
T d2omxa2 186 -DIS--VLAKLTNLESL 199 (199)
T ss_dssp -CCG--GGGGCTTCSEE
T ss_pred -CCc--cccCCCCCCcC
Confidence 343 24566666654
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.6e-17 Score=155.96 Aligned_cols=220 Identities=13% Similarity=0.102 Sum_probs=114.1
Q ss_pred CEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcc
Q 005619 142 ISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLS 221 (688)
Q Consensus 142 ~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~ 221 (688)
+.++.++..++ .+|..++ +++++|++++|.++...+.+|.++++|++|++++|.+...++...|..++.++++.+.
T Consensus 11 ~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~ 86 (242)
T d1xwdc1 11 RVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 86 (242)
T ss_dssp SEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred CEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence 45555555555 5554432 3556666666666544444555666666666666655544454445555555555543
Q ss_pred c-CcCCCcCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCC
Q 005619 222 N-NNFDGQIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGN 300 (688)
Q Consensus 222 ~-n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 300 (688)
. |.+....+..|.++++|+++++++|.+....+. ..+..+..+..+...++.+...
T Consensus 87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~-----------------------~~~~~l~~l~~~~~~n~~l~~i 143 (242)
T d1xwdc1 87 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-----------------------HKIHSLQKVLLDIQDNINIHTI 143 (242)
T ss_dssp CCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCC-----------------------TTTCBSSCEEEEEESCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhcccccc-----------------------cccccccccccccccccccccc
Confidence 2 334333334444444444444444444321111 1112233333344444444433
Q ss_pred CcccccCCC-CCcEEEccCCcCccccccccccCccceE-eeecCccccCCchhccCCCCccEEeCcCCcCCCcCchhhhc
Q 005619 301 IPVQFNNLA-ILQILDISENNLSGSMISTLNLSSVEHL-YLQSNALGGSIPNTIFRGSALETLDLRDNYFFGRIPHQINE 378 (688)
Q Consensus 301 ~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 378 (688)
.+..|..++ .++.+++++|+++......+..++++++ .+++|.++...+..|..+++|++|++++|+++...+..|.+
T Consensus 144 ~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~ 223 (242)
T d1xwdc1 144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 223 (242)
T ss_dssp CTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTT
T ss_pred cccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcC
Confidence 344444443 5666666666666655555545554444 34556666333345666777888888877776555555666
Q ss_pred CCCccEEecc
Q 005619 379 HSNLRALLLR 388 (688)
Q Consensus 379 l~~L~~L~L~ 388 (688)
+++|+.+++.
T Consensus 224 l~~L~~l~~~ 233 (242)
T d1xwdc1 224 LKKLRARSTY 233 (242)
T ss_dssp CCEEESSSEE
T ss_pred CcccccCcCC
Confidence 6666665554
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.67 E-value=8.1e-16 Score=143.10 Aligned_cols=164 Identities=23% Similarity=0.324 Sum_probs=83.2
Q ss_pred CcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEcc
Q 005619 68 TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDIS 147 (688)
Q Consensus 68 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls 147 (688)
+.+|++|++++|.++.++. +..+++|++|++++|+++ .++. ++.+++|++|++++|++++++....
T Consensus 45 L~~L~~L~l~~~~i~~l~~-l~~l~~L~~L~L~~n~i~-~l~~--~~~l~~L~~L~l~~n~i~~l~~l~~---------- 110 (210)
T d1h6ta2 45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLDENKVKDLSSLKD---------- 110 (210)
T ss_dssp HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCGGGGTT----------
T ss_pred hcCccEEECcCCCCCCchh-HhhCCCCCEEeCCCcccc-Cccc--cccCccccccccccccccccccccc----------
Confidence 3456666666666655542 555666666666666665 2332 2355566666666665554433334
Q ss_pred CCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCC
Q 005619 148 SNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG 227 (688)
Q Consensus 148 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 227 (688)
+++|+.|++++|.+.. ...+..++.++.+++++|.+.+ .+ .+..+++|+.+++++|.+++
T Consensus 111 ---------------l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~-~~--~~~~l~~L~~l~l~~n~l~~ 170 (210)
T d1h6ta2 111 ---------------LKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITD-IT--VLSRLTKLDTLSLEDNQISD 170 (210)
T ss_dssp ---------------CTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCC-CG--GGGGCTTCSEEECCSSCCCC
T ss_pred ---------------cccccccccccccccc--cccccccccccccccccccccc-cc--cccccccccccccccccccc
Confidence 4445555555444432 1234445555555555555441 11 12344555555555555543
Q ss_pred cCcccccCCCCCCEEeccCCcCCCcccccccCCCCCCEEEcc
Q 005619 228 QIFPNYVNLTRLLFLYLDNNHFSGKIKDGLLRSSELMVLDIS 269 (688)
Q Consensus 228 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 269 (688)
. ..+.++++|++|++++|.++. ++ .+..+++|++|+|+
T Consensus 171 i--~~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls 208 (210)
T d1h6ta2 171 I--VPLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (210)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred c--ccccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence 2 124555555555555555542 22 35555566666554
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.66 E-value=1.4e-15 Score=140.27 Aligned_cols=161 Identities=26% Similarity=0.341 Sum_probs=102.6
Q ss_pred CcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEcc
Q 005619 68 TFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDIS 147 (688)
Q Consensus 68 l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls 147 (688)
+.++++|++++|.+..++ .+..+++|++|++++|++++ ++. +.++++|++|++++|.+...+....++.|+.|+++
T Consensus 39 l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~-~~~--l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~ 114 (199)
T d2omxa2 39 LDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF 114 (199)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred hcCCCEEECCCCCCCCcc-ccccCCCcCcCccccccccC-ccc--ccCCccccccccccccccccccccccccccccccc
Confidence 456677777777776664 35667777777777777763 333 35677777777777776665555566777777777
Q ss_pred CCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccCchhhcCCCCCCEEEcccCcCCC
Q 005619 148 SNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELSQSPVTNCFSLEWLQLSNNNFDG 227 (688)
Q Consensus 148 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~i~~ 227 (688)
+|.+. .++ .+ ..+++|+.|++++|.+.. + +.+..+++|++|++.+|.++ .++ .+.++++|++|++++|++++
T Consensus 115 ~~~~~-~~~-~~-~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~-~l~--~l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 115 NNQIT-DID-PL-KNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT-DLK--PLANLTTLERLDISSNKVSD 186 (199)
T ss_dssp SSCCC-CCG-GG-TTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCCC
T ss_pred ccccc-ccc-cc-chhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc-CCc--cccCCCCCCEEECCCCCCCC
Confidence 77665 222 22 256777777777776653 2 34666777777777777766 333 24567777777777777664
Q ss_pred cCcccccCCCCCCEE
Q 005619 228 QIFPNYVNLTRLLFL 242 (688)
Q Consensus 228 ~~~~~~~~l~~L~~L 242 (688)
. +.+..+++|++|
T Consensus 187 i--~~l~~L~~L~~L 199 (199)
T d2omxa2 187 I--SVLAKLTNLESL 199 (199)
T ss_dssp C--GGGGGCTTCSEE
T ss_pred C--ccccCCCCCCcC
Confidence 2 345666666654
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=1.1e-16 Score=156.50 Aligned_cols=223 Identities=17% Similarity=0.153 Sum_probs=133.1
Q ss_pred CEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCC-CCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccC
Q 005619 95 KYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLT-SAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISK 173 (688)
Q Consensus 95 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~ 173 (688)
+.+|++++.+.......+.. .....+.++...+...... ....+|++||++++.++......++..+++|++|++++
T Consensus 3 ~~lDLs~~~l~~~~l~~l~~--~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~ 80 (284)
T d2astb2 3 QTLDLTGKNLHPDVTGRLLS--QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEG 80 (284)
T ss_dssp SEEECTTCBCCHHHHHHHHH--TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTT
T ss_pred CEEECCCCCCCchHHHHHHh--ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccc
Confidence 35666666554222222221 2344555554443322111 14457788888887776554555566788888888888
Q ss_pred CCCCcccchhhhcCCCCCEEEccCC-cCccccCchhhcCCCCCCEEEcccC-cCCCcC-cccc-cCCCCCCEEeccCCc-
Q 005619 174 NSFEGNIPSSIGKMQGLRLLDVSSN-KFAGELSQSPVTNCFSLEWLQLSNN-NFDGQI-FPNY-VNLTRLLFLYLDNNH- 248 (688)
Q Consensus 174 n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~-~~~~-~~l~~L~~L~L~~n~- 248 (688)
+.+++..+..++.+++|++|+++++ .+++..-......+++|++|++++| .++... ...+ ..+++|+.|+++++.
T Consensus 81 ~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 160 (284)
T d2astb2 81 LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160 (284)
T ss_dssp CBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGG
T ss_pred cCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccc
Confidence 8887777778888888888888885 3432211223456788888888876 343211 1112 234677778777642
Q ss_pred -CCCc-ccccccCCCCCCEEEccCCc-CCCCCchhhhCCcCCcEEEcccc-ccCCCCcccccCCCCCcEEEccCC
Q 005619 249 -FSGK-IKDGLLRSSELMVLDISNNH-LSGHIPSWMGNFSNLYILSMSKN-LLEGNIPVQFNNLAILQILDISEN 319 (688)
Q Consensus 249 -l~~~-~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~Ls~n 319 (688)
++.. +......+++|++|++++|. +++.....+..+++|++|++++| .+++.....+..+++|++|+++++
T Consensus 161 ~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred ccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 3322 12223456777777777753 55555566667777777777774 455444455666777777777665
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=2.2e-16 Score=154.48 Aligned_cols=223 Identities=18% Similarity=0.198 Sum_probs=115.8
Q ss_pred CEEeCCCCcCcccccCHHhhccCCCCCEEEccCCCCcccccccCCCCCcceeEEECCCCCCC--CcchhhhCCCCCCEEE
Q 005619 21 EYLALYDNKFKGRLFSFCSLANLSKLEVFQLSMEADLLQVKIENCLPTFQLKVLSLPNCNLG--VIPNFLLHQFNLKYLD 98 (688)
Q Consensus 21 ~~L~Ls~n~~~~~~~~~~~l~~l~~L~~L~Ls~~~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~lp~~~~~l~~L~~L~ 98 (688)
++|||+++.+.. ......+. .....+.++..... .+........+|++|++++|.+. .++..+..+++|++|+
T Consensus 3 ~~lDLs~~~l~~-~~l~~l~~--~~~~~lrl~~~~~~--~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~ 77 (284)
T d2astb2 3 QTLDLTGKNLHP-DVTGRLLS--QGVIAFRCPRSFMD--QPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 77 (284)
T ss_dssp SEEECTTCBCCH-HHHHHHHH--TTCSEEECTTCEEC--SCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred CEEECCCCCCCc-hHHHHHHh--ccceEeeccccccc--cchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccc
Confidence 478999887653 11111121 23445555543221 11112334456777777777663 2455566777777777
Q ss_pred CCCCcCCCCCchHHhhCCCCCcEEEccCC-CCCCCCCCCCCCCcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCC-C
Q 005619 99 LSHNKLAGNFPTWLLENNTKLEVLYLTNN-SFSGFQLTSAQHGLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNS-F 176 (688)
Q Consensus 99 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l 176 (688)
+++|.+++..+..+ ..+++|++|++++| .+++ ..-..+...+++|++|++++|. +
T Consensus 78 L~~~~l~~~~~~~l-~~~~~L~~L~Ls~c~~itd----------------------~~l~~l~~~~~~L~~L~ls~c~~~ 134 (284)
T d2astb2 78 LEGLRLSDPIVNTL-AKNSNLVRLNLSGCSGFSE----------------------FALQTLLSSCSRLDELNLSWCFDF 134 (284)
T ss_dssp CTTCBCCHHHHHHH-TTCTTCSEEECTTCBSCCH----------------------HHHHHHHHHCTTCCEEECCCCTTC
T ss_pred ccccCCCcHHHHHH-hcCCCCcCccccccccccc----------------------cccchhhHHHHhcccccccccccc
Confidence 77777664444443 35666666666654 2322 1112223345666666666642 2
Q ss_pred Ccc-cchhhhc-CCCCCEEEccCCc--CccccCchhhcCCCCCCEEEcccC-cCCCcCcccccCCCCCCEEeccCC-cCC
Q 005619 177 EGN-IPSSIGK-MQGLRLLDVSSNK--FAGELSQSPVTNCFSLEWLQLSNN-NFDGQIFPNYVNLTRLLFLYLDNN-HFS 250 (688)
Q Consensus 177 ~~~-~~~~l~~-l~~L~~L~L~~n~--l~~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~ 250 (688)
+.. +...+.. .+.|+.|+++++. +++..-......+++|++|++++| .+++.....+..+++|++|++++| .++
T Consensus 135 ~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~ 214 (284)
T d2astb2 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII 214 (284)
T ss_dssp CHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred ccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCC
Confidence 211 1122222 3566666666542 221111222345666666666664 355445555666666666666664 454
Q ss_pred CcccccccCCCCCCEEEccCC
Q 005619 251 GKIKDGLLRSSELMVLDISNN 271 (688)
Q Consensus 251 ~~~~~~~~~~~~L~~L~Ls~n 271 (688)
+.....++.+++|+.|+++++
T Consensus 215 ~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 215 PETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp GGGGGGGGGCTTCCEEECTTS
T ss_pred hHHHHHHhcCCCCCEEeeeCC
Confidence 444445556666666666665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.51 E-value=3.7e-15 Score=150.49 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=42.0
Q ss_pred ccccEEEccCCccccc----CChhhhccCCCCeeeCCCCcCccCCCc----ccc--CCCCCCeEeCCCCccccc----CC
Q 005619 495 DYMAGLDLSSNKLTGD----IPSEICDLQNIHGLNLSHNFLSGSIPE----SFS--NLKMIESLDLSHNKLNGQ----IP 560 (688)
Q Consensus 495 ~~L~~LdLs~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~--~l~~L~~L~Ls~N~l~~~----~p 560 (688)
+.|+.|+|++|.++.. +...+..+++|++|+|++|.|++.... .+. ..+.|++||+++|+++.. +.
T Consensus 215 ~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~ 294 (344)
T d2ca6a1 215 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 294 (344)
T ss_dssp TTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHH
Confidence 3444455555544322 223344555555555555555533111 121 124566666666666532 11
Q ss_pred cCC-CCCCCCCEEecCCCcCcc
Q 005619 561 PQL-TELHSLSKFDVSYNDLSG 581 (688)
Q Consensus 561 ~~l-~~l~~L~~L~ls~N~l~~ 581 (688)
..+ .+.++|++|++++|.+..
T Consensus 295 ~~l~~~~~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 295 TVIDEKMPDLLFLELNGNRFSE 316 (344)
T ss_dssp HHHHHHCTTCCEEECTTSBSCT
T ss_pred HHHHccCCCCCEEECCCCcCCC
Confidence 222 135566777777776653
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.49 E-value=1.6e-14 Score=145.68 Aligned_cols=228 Identities=18% Similarity=0.168 Sum_probs=110.9
Q ss_pred cchhhhcCCCCCEEEccCCcCccccCch---hhcCCCCCCEEEcccCcCCCcC----------cccccCCCCCCEEeccC
Q 005619 180 IPSSIGKMQGLRLLDVSSNKFAGELSQS---PVTNCFSLEWLQLSNNNFDGQI----------FPNYVNLTRLLFLYLDN 246 (688)
Q Consensus 180 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~---~~~~l~~L~~L~L~~n~i~~~~----------~~~~~~l~~L~~L~L~~ 246 (688)
+...+.....++.|+|++|.+....... .+...++|+.++++++...... ...+..+++|++|++++
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 3456777888888888888775322111 2345567777777766443211 11233445555555555
Q ss_pred CcCCCcc----cccccCCCCCCEEEccCCcCCCCCchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCc
Q 005619 247 NHFSGKI----KDGLLRSSELMVLDISNNHLSGHIPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLS 322 (688)
Q Consensus 247 n~l~~~~----~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 322 (688)
|.+.... ...+...++|++|++++|.+.......++. .+..+ .........+.|+.+++++|.+.
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~~---------~~~~~~~~~~~L~~l~l~~n~i~ 171 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQEL---------AVNKKAKNAPPLRSIICGRNRLE 171 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHHH---------HHHHHHHTCCCCCEEECCSSCCT
T ss_pred cccccccccchhhhhcccccchheecccccccccccccccc--ccccc---------ccccccccCcccceeeccccccc
Confidence 5554321 112233445555555555443111100000 00000 00000123345555555555554
Q ss_pred ccccccc-----ccCccceEeeecCccccC-----CchhccCCCCccEEeCcCCcCCCc----CchhhhcCCCccEEecc
Q 005619 323 GSMISTL-----NLSSVEHLYLQSNALGGS-----IPNTIFRGSALETLDLRDNYFFGR----IPHQINEHSNLRALLLR 388 (688)
Q Consensus 323 ~~~~~~~-----~~~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~ 388 (688)
......+ ..+.|++|++++|.+... +...+..+++|+.|++++|.++.. +...+..+++|++|+++
T Consensus 172 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls 251 (344)
T d2ca6a1 172 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 251 (344)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred ccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhh
Confidence 3222111 345566666666655421 122344556677777776665432 23344566677777777
Q ss_pred CCcCCCCCch----hhcC--CCCCCEEEccCCcCcc
Q 005619 389 GNYLQGPIPH----QLCQ--LRKLSIMDLSHNRLNG 418 (688)
Q Consensus 389 ~n~l~~~~~~----~~~~--l~~L~~L~ls~n~l~~ 418 (688)
+|.+++.... .+.. .+.|++|++++|+++.
T Consensus 252 ~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~ 287 (344)
T d2ca6a1 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 287 (344)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred cCccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence 7766543222 2222 2457777777777654
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47 E-value=7.3e-14 Score=123.10 Aligned_cols=128 Identities=16% Similarity=0.190 Sum_probs=67.4
Q ss_pred CCCCcceeEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEE
Q 005619 65 CLPTFQLKVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISL 144 (688)
Q Consensus 65 ~~~l~~L~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L 144 (688)
+.+..++++|+|++|+|+.+|..+..+++|++|++++|+++ .++....+++|++|
T Consensus 14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-------------------------~l~~~~~l~~L~~L 68 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-------------------------KLDGFPLLRRLKTL 68 (162)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-------------------------EECCCCCCSSCCEE
T ss_pred ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCC-------------------------ccCCcccCcchhhh
Confidence 33444555566665555555544445555555555555554 33222334445555
Q ss_pred EccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccc-hhhhcCCCCCEEEccCCcCccccCc---hhhcCCCCCCEEE
Q 005619 145 DISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIP-SSIGKMQGLRLLDVSSNKFAGELSQ---SPVTNCFSLEWLQ 219 (688)
Q Consensus 145 ~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~---~~~~~l~~L~~L~ 219 (688)
++++|+++ .++..++..+++|++|++++|.++.... ..+..+++|++|++++|.++ ..+. ..+..+++|+.||
T Consensus 69 ~ls~N~i~-~l~~~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 69 LVNNNRIC-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp ECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred hccccccc-CCCccccccccccccceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence 55555554 4444444456666666666666653211 34566666666666666665 3332 2234455555554
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.46 E-value=3.4e-13 Score=112.73 Aligned_cols=102 Identities=27% Similarity=0.336 Sum_probs=49.8
Q ss_pred eEEECCCCCCCCcchhhhCCCCCCEEECCCCcCCCCCchHHhhCCCCCcEEEccCCCCCCCCCCCCCCCcCEEEccCCCC
Q 005619 72 KVLSLPNCNLGVIPNFLLHQFNLKYLDLSHNKLAGNFPTWLLENNTKLEVLYLTNNSFSGFQLTSAQHGLISLDISSNNF 151 (688)
Q Consensus 72 ~~L~l~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~L~~L~ls~n~~ 151 (688)
|+|++++|+++.++. +..+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++++....+++|++|++++|++
T Consensus 1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i 77 (124)
T d1dcea3 1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRL 77 (124)
T ss_dssp SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCC
T ss_pred CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccC-cchhhh-hhhhcccccccccccccccCccccccccCeEECCCCcc
Confidence 345555666555543 555566666666666665 455433 35555666555555555443333344444444444444
Q ss_pred CCCCCh-hhhhcCCCCCEEEccCCCCC
Q 005619 152 TGKLPQ-NMGIVLPKLDCMNISKNSFE 177 (688)
Q Consensus 152 ~~~~~~-~~~~~l~~L~~L~l~~n~l~ 177 (688)
+ .++. .....+++|++|++++|.++
T Consensus 78 ~-~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 78 Q-QSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp C-SSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred C-CCCCchhhcCCCCCCEEECCCCcCC
Confidence 3 2221 11123445555555554443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2.4e-13 Score=119.73 Aligned_cols=126 Identities=13% Similarity=0.039 Sum_probs=68.5
Q ss_pred CCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCCCccEEe
Q 005619 283 NFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGSALETLD 362 (688)
Q Consensus 283 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 362 (688)
++.++++|++++|+++.. +..+..+++|+.|++++|+++.. +....+++|++|++++|+++...+..+..+++|++|+
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~ 93 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 93 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc-CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence 344455555555555422 33334445555555555555433 1222455555566666655533333344566677777
Q ss_pred CcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCC---chhhcCCCCCCEEE
Q 005619 363 LRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPI---PHQLCQLRKLSIMD 410 (688)
Q Consensus 363 l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~ 410 (688)
+++|++..... ..+..+++|++|++++|+++... +..+..+++|++||
T Consensus 94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred eccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 77776644321 35666777777777777776332 23466677777776
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=1e-12 Score=109.76 Aligned_cols=81 Identities=25% Similarity=0.433 Sum_probs=34.7
Q ss_pred CcCEEEccCCCCCCCCChhhhhcCCCCCEEEccCCCCCcccchhhhcCCCCCEEEccCCcCccccC-chhhcCCCCCCEE
Q 005619 140 GLISLDISSNNFTGKLPQNMGIVLPKLDCMNISKNSFEGNIPSSIGKMQGLRLLDVSSNKFAGELS-QSPVTNCFSLEWL 218 (688)
Q Consensus 140 ~L~~L~ls~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L 218 (688)
+|++|++++|.++ .+|..+. .+++|++|++++|.++.. | .++.+++|++|++++|++. .++ ...+..+++|+.|
T Consensus 21 ~L~~L~ls~N~l~-~lp~~~~-~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N~i~-~~~~~~~l~~~~~L~~L 95 (124)
T d1dcea3 21 LVTHLDLSHNRLR-ALPPALA-ALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNNRLQ-QSAAIQPLVSCPRLVLL 95 (124)
T ss_dssp TCCEEECCSSCCC-CCCGGGG-GCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCC-SSSTTGGGGGCTTCCEE
T ss_pred CCCEEECCCCccC-cchhhhh-hhhccccccccccccccc-C-ccccccccCeEECCCCccC-CCCCchhhcCCCCCCEE
Confidence 3333333333333 3443332 344555555555554422 2 2444555555555555444 222 1223444444444
Q ss_pred EcccCcC
Q 005619 219 QLSNNNF 225 (688)
Q Consensus 219 ~L~~n~i 225 (688)
++++|.+
T Consensus 96 ~l~~N~i 102 (124)
T d1dcea3 96 NLQGNSL 102 (124)
T ss_dssp ECTTSGG
T ss_pred ECCCCcC
Confidence 4444444
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.2e-12 Score=114.38 Aligned_cols=89 Identities=20% Similarity=0.209 Sum_probs=77.6
Q ss_pred cccccEEEccCC-cccccCChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEE
Q 005619 494 LDYMAGLDLSSN-KLTGDIPSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKF 572 (688)
Q Consensus 494 l~~L~~LdLs~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 572 (688)
++++++|++++| .++...+.+|.++++|+.|+|++|+|+++.|..|.++++|++|+|++|+++...+..+..+ +|++|
T Consensus 30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L 108 (156)
T d2ifga3 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL 108 (156)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence 467888999766 4887778889999999999999999998889999999999999999999996656566554 79999
Q ss_pred ecCCCcCccCC
Q 005619 573 DVSYNDLSGPI 583 (688)
Q Consensus 573 ~ls~N~l~~~~ 583 (688)
+|++|++.|.|
T Consensus 109 ~L~~Np~~C~C 119 (156)
T d2ifga3 109 VLSGNPLHCSC 119 (156)
T ss_dssp ECCSSCCCCCG
T ss_pred ccCCCcccCCc
Confidence 99999999877
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.34 E-value=5.6e-14 Score=128.52 Aligned_cols=143 Identities=23% Similarity=0.290 Sum_probs=100.5
Q ss_pred ccEEeCcCC--cCCCcCchhhhcCCCccEEeccCCcCCCCCchhhcCCCCCCEEEccCCcCccccchhhhhhhhcccCCc
Q 005619 358 LETLDLRDN--YFFGRIPHQINEHSNLRALLLRGNYLQGPIPHQLCQLRKLSIMDLSHNRLNGSIPACITNLLFWKVGSR 435 (688)
Q Consensus 358 L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~~~~~~~ 435 (688)
.+.+++.+. .+ ..++..+..+++|++|++++|+++. ++ .+..+++|+.|++++|.++ .+|.....
T Consensus 25 ~~~~~l~~~~~~i-~~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~--------- 91 (198)
T d1m9la_ 25 AEKVELHGMIPPI-EKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV--------- 91 (198)
T ss_dssp CSCEECCBCCTTC-CCCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHH---------
T ss_pred cceeeeecccCch-hhhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-cccccccc---------
Confidence 444555443 22 3455677888888888888888874 33 4777888888888888876 34432211
Q ss_pred ccccceeEEecccccccccccccceecccCCCCCCCCCcceEEEeeeccccccccccccccccEEEccCCcccccCChhh
Q 005619 436 YLSGFVMVVMDLGVADIRNYYNSTVQLSLDGIDGRSLGTQVEVNFMTKNRYESYKGVILDYMAGLDLSSNKLTGDIPSEI 515 (688)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~LdLs~N~l~~~~p~~~ 515 (688)
++.|+.|++++|+++.. +.+
T Consensus 92 ----------------------------------------------------------~~~L~~L~l~~N~i~~l--~~~ 111 (198)
T d1m9la_ 92 ----------------------------------------------------------ADTLEELWISYNQIASL--SGI 111 (198)
T ss_dssp ----------------------------------------------------------HHHCCEEECSEEECCCH--HHH
T ss_pred ----------------------------------------------------------ccccccccccccccccc--ccc
Confidence 34578888888888743 357
Q ss_pred hccCCCCeeeCCCCcCccCCC-ccccCCCCCCeEeCCCCcccccCCcC----------CCCCCCCCEEe
Q 005619 516 CDLQNIHGLNLSHNFLSGSIP-ESFSNLKMIESLDLSHNKLNGQIPPQ----------LTELHSLSKFD 573 (688)
Q Consensus 516 ~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~----------l~~l~~L~~L~ 573 (688)
..+++|+.|++++|+++.... ..++.+++|+.|+|++|++....+.. +..+|+|+.||
T Consensus 112 ~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 112 EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 888889999999998884322 46788888999999999887654443 45678888876
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=2.7e-11 Score=105.52 Aligned_cols=111 Identities=19% Similarity=0.230 Sum_probs=88.0
Q ss_pred cccEEEccCCcccccCChhhhccCCCCeeeCCCC-cCccCCCccccCCCCCCeEeCCCCcccccCCcCCCCCCCCCEEec
Q 005619 496 YMAGLDLSSNKLTGDIPSEICDLQNIHGLNLSHN-FLSGSIPESFSNLKMIESLDLSHNKLNGQIPPQLTELHSLSKFDV 574 (688)
Q Consensus 496 ~L~~LdLs~N~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 574 (688)
..+.++.+++++. ..|..+..+++|+.|++++| .++.+.+..|.++++|+.|+|++|+|+.+.|..|..+++|++|+|
T Consensus 9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 87 (156)
T d2ifga3 9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (156)
T ss_dssp SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred CCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceec
Confidence 4566899999888 56888999999999999876 599777888999999999999999999988999999999999999
Q ss_pred CCCcCccCCCCCcccCCcCccccCCCCCCCCCCCCCCCC
Q 005619 575 SYNDLSGPIPDKEQFSTFDESSYRGNLHLCGPPINKSCT 613 (688)
Q Consensus 575 s~N~l~~~~p~~~~~~~~~~~~~~~n~~l~~~p~~~~C~ 613 (688)
++|+++...+...+...+......+ +|+.+.|.
T Consensus 88 s~N~l~~l~~~~~~~~~l~~L~L~~------Np~~C~C~ 120 (156)
T d2ifga3 88 SFNALESLSWKTVQGLSLQELVLSG------NPLHCSCA 120 (156)
T ss_dssp CSSCCSCCCSTTTCSCCCCEEECCS------SCCCCCGG
T ss_pred cCCCCcccChhhhccccccccccCC------CcccCCch
Confidence 9999995443333223344444444 45555564
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.20 E-value=4e-13 Score=122.73 Aligned_cols=130 Identities=19% Similarity=0.238 Sum_probs=82.0
Q ss_pred CchhhhCCcCCcEEEccccccCCCCcccccCCCCCcEEEccCCcCccccccccccCccceEeeecCccccCCchhccCCC
Q 005619 277 IPSWMGNFSNLYILSMSKNLLEGNIPVQFNNLAILQILDISENNLSGSMISTLNLSSVEHLYLQSNALGGSIPNTIFRGS 356 (688)
Q Consensus 277 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~ 356 (688)
++..+..+++|++|++++|+++.. + .+..+++|++|++++|.++........+++|++|++++|.++. + +.+..++
T Consensus 40 l~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~-l-~~~~~l~ 115 (198)
T d1m9la_ 40 MDATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS-L-SGIEKLV 115 (198)
T ss_dssp CHHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCC-H-HHHHHHH
T ss_pred hhhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccccccccccccccccccccccccccc-c-ccccccc
Confidence 345566667777777777776633 2 3666677777777777666543222244567777777777763 3 2355667
Q ss_pred CccEEeCcCCcCCCcCc-hhhhcCCCccEEeccCCcCCCCCch----------hhcCCCCCCEEE
Q 005619 357 ALETLDLRDNYFFGRIP-HQINEHSNLRALLLRGNYLQGPIPH----------QLCQLRKLSIMD 410 (688)
Q Consensus 357 ~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----------~~~~l~~L~~L~ 410 (688)
+|+.|++++|+++.... ..+..+++|+.|++++|++....+. .+..+++|+.||
T Consensus 116 ~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 77777777777754322 4567777888888888776533221 255678888876
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=1.2e-07 Score=82.62 Aligned_cols=80 Identities=25% Similarity=0.177 Sum_probs=50.3
Q ss_pred cccccEEEccCCcccccC--ChhhhccCCCCeeeCCCCcCccCCCccccCCCCCCeEeCCCCcccccCCc-------CCC
Q 005619 494 LDYMAGLDLSSNKLTGDI--PSEICDLQNIHGLNLSHNFLSGSIPESFSNLKMIESLDLSHNKLNGQIPP-------QLT 564 (688)
Q Consensus 494 l~~L~~LdLs~N~l~~~~--p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-------~l~ 564 (688)
++.|++|||++|+|+... +..+..+++|+.|+|++|.++...+-.+.....|+.|++++|.++..... .+.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 566777777777776542 34566677777777777777744333333445677777777777654432 245
Q ss_pred CCCCCCEEe
Q 005619 565 ELHSLSKFD 573 (688)
Q Consensus 565 ~l~~L~~L~ 573 (688)
.+|+|++||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 567777664
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.14 E-value=1.3e-07 Score=82.20 Aligned_cols=80 Identities=21% Similarity=0.216 Sum_probs=41.1
Q ss_pred cCccceEeeecCccccC--CchhccCCCCccEEeCcCCcCCCcCchhhhcCCCccEEeccCCcCCCCCc-------hhhc
Q 005619 331 LSSVEHLYLQSNALGGS--IPNTIFRGSALETLDLRDNYFFGRIPHQINEHSNLRALLLRGNYLQGPIP-------HQLC 401 (688)
Q Consensus 331 ~~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------~~~~ 401 (688)
+++|++|++++|+++.. ++..+..+++|+.|++++|.++...+-......+|+.|++++|++..... ..+.
T Consensus 64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~ 143 (162)
T d1koha1 64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRE 143 (162)
T ss_dssp CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHT
T ss_pred CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHH
Confidence 44455555555554422 12334455666666666666644333223334456666666666654332 1244
Q ss_pred CCCCCCEEE
Q 005619 402 QLRKLSIMD 410 (688)
Q Consensus 402 ~l~~L~~L~ 410 (688)
.+|+|+.||
T Consensus 144 ~~P~L~~LD 152 (162)
T d1koha1 144 RFPKLLRLD 152 (162)
T ss_dssp TSTTCCEET
T ss_pred HCCCCCEEC
Confidence 566777665
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.65 E-value=1.9e-05 Score=68.45 Aligned_cols=85 Identities=12% Similarity=0.147 Sum_probs=48.6
Q ss_pred CccceEeeecCccccC----CchhccCCCCccEEeCcCCcCCCcC----chhhhcCCCccEEeccCCcCCCC-------C
Q 005619 332 SSVEHLYLQSNALGGS----IPNTIFRGSALETLDLRDNYFFGRI----PHQINEHSNLRALLLRGNYLQGP-------I 396 (688)
Q Consensus 332 ~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~-------~ 396 (688)
+.|++|++++|.+... +...+...+.|++|++++|.++... ...+...++|++|++++|.+... +
T Consensus 44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l 123 (167)
T d1pgva_ 44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDM 123 (167)
T ss_dssp SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHH
T ss_pred CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHH
Confidence 3444444444444321 2233344566777777777765432 23445567788888877765432 2
Q ss_pred chhhcCCCCCCEEEccCCcC
Q 005619 397 PHQLCQLRKLSIMDLSHNRL 416 (688)
Q Consensus 397 ~~~~~~l~~L~~L~ls~n~l 416 (688)
...+...++|+.|+++.+..
T Consensus 124 ~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 124 MMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhCCCccEeeCcCCCc
Confidence 34455568888888876643
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.65 E-value=2.1e-05 Score=68.15 Aligned_cols=21 Identities=19% Similarity=0.256 Sum_probs=12.5
Q ss_pred chhhhCCCCCCEEECCCCcCC
Q 005619 85 PNFLLHQFNLKYLDLSHNKLA 105 (688)
Q Consensus 85 p~~~~~l~~L~~L~Ls~n~l~ 105 (688)
...+...+.|++|++++|.++
T Consensus 65 a~~L~~n~~L~~L~L~~n~i~ 85 (167)
T d1pgva_ 65 IELIETSPSLRVLNVESNFLT 85 (167)
T ss_dssp HHHHHHCSSCCEEECCSSBCC
T ss_pred hhhhhhcccccceeeehhhcc
Confidence 344555566666666666665
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.15 E-value=0.00012 Score=63.25 Aligned_cols=16 Identities=13% Similarity=0.084 Sum_probs=7.7
Q ss_pred CCCCCCEEEccCCcCc
Q 005619 402 QLRKLSIMDLSHNRLN 417 (688)
Q Consensus 402 ~l~~L~~L~ls~n~l~ 417 (688)
..++|++|++++|.++
T Consensus 44 ~n~~L~~L~Ls~n~l~ 59 (166)
T d1io0a_ 44 TNTYVKKFSIVGTRSN 59 (166)
T ss_dssp TCCSCCEEECTTSCCC
T ss_pred cCCccCeeeccCCccc
Confidence 4444555555555443
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.95 E-value=9e-05 Score=64.04 Aligned_cols=90 Identities=17% Similarity=0.075 Sum_probs=47.8
Q ss_pred CchhhcCCCCCCEEeCCC-CcCccccc--CHHhhccCCCCCEEEccCCCCcccccc---cCCCCCcceeEEECCCCCCCC
Q 005619 10 LPSVIANLTSLEYLALYD-NKFKGRLF--SFCSLANLSKLEVFQLSMEADLLQVKI---ENCLPTFQLKVLSLPNCNLGV 83 (688)
Q Consensus 10 ~~~~~~~l~~L~~L~Ls~-n~~~~~~~--~~~~l~~l~~L~~L~Ls~~~~~~~~~~---~~~~~l~~L~~L~l~~n~l~~ 83 (688)
+.....+.+.|++|+|++ +.++.... -...+...++|+.|++++|.+...... ..+...+.++.+++++|.++.
T Consensus 9 l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~ 88 (166)
T d1io0a_ 9 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 88 (166)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccc
Confidence 444556678888888887 44543111 023455677777777777654321111 123334556666666666521
Q ss_pred -----cchhhhCCCCCCEEEC
Q 005619 84 -----IPNFLLHQFNLKYLDL 99 (688)
Q Consensus 84 -----lp~~~~~l~~L~~L~L 99 (688)
+...+...++|+.++|
T Consensus 89 ~g~~~l~~~l~~~~~L~~l~L 109 (166)
T d1io0a_ 89 SGILALVEALQSNTSLIELRI 109 (166)
T ss_dssp HHHHHHHHGGGGCSSCCEEEC
T ss_pred hhHHHHHHHHHhCccccEEee
Confidence 2234455555665444
|