Citrus Sinensis ID: 005628
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 687 | 2.2.26 [Sep-21-2011] | |||||||
| Q66GI4 | 572 | Proteinaceous RNase P 1, | yes | no | 0.471 | 0.566 | 0.518 | 2e-84 | |
| F4JKB6 | 576 | Proteinaceous RNase P 3 O | no | no | 0.465 | 0.555 | 0.413 | 1e-70 | |
| Q680B9 | 528 | Proteinaceous RNase P 2 O | no | no | 0.465 | 0.606 | 0.413 | 9e-64 | |
| P0C896 | 576 | Pentatricopeptide repeat- | no | no | 0.135 | 0.161 | 0.268 | 9e-05 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.222 | 0.242 | 0.259 | 0.0001 | |
| Q9SAD9 | 517 | Pentatricopeptide repeat- | no | no | 0.151 | 0.201 | 0.25 | 0.0002 | |
| Q8L6Y3 | 593 | Pentatricopeptide repeat- | no | no | 0.133 | 0.155 | 0.27 | 0.0004 | |
| Q9ZUA2 | 559 | Pentatricopeptide repeat- | no | no | 0.176 | 0.216 | 0.256 | 0.0004 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.104 | 0.119 | 0.301 | 0.0004 | |
| Q9LN22 | 537 | Pentatricopeptide repeat- | no | no | 0.122 | 0.156 | 0.285 | 0.0006 |
| >sp|Q66GI4|PRRP1_ARATH Proteinaceous RNase P 1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=PRORP1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 313 bits (803), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 170/328 (51%), Positives = 229/328 (69%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGK 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + + GGGWHG GWLG
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 GKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
GKW V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDW 687
P NRAL+EKWKNA ALYATP GSNDDW
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDW 476
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|F4JKB6|PRRP3_ARATH Proteinaceous RNase P 3 OS=Arabidopsis thaliana GN=PRORP3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 202/336 (60%), Gaps = 16/336 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T+ I +WF +A+ + L++ + GGGWHGLGW+G+GKW
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R E + F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
R+ ++ P +R L+E+W N + LYATP GSNDDW
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDW 482
|
Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|Q680B9|PRRP2_ARATH Proteinaceous RNase P 2 OS=Arabidopsis thaliana GN=PRORP2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 245 bits (625), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 205/336 (61%), Gaps = 16/336 (4%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNE--SLIKDTMENKGGGWHGLGWLGKGKW 542
V VS T +I +WF ++A +G ++++ + N GGGWHG GW+G+GKW
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
R+ ++ P +R L+E+W + LYATP GSNDDW
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDW 423
|
Endonuclease RNase P responsible for the 5' maturation of tRNA precursors. Also involved in the maturation of mRNA and small nucleolar RNA (snoRNA). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: . EC: 2 EC: 6 EC: . EC: 5 |
| >sp|P0C896|PP209_ARATH Pentatricopeptide repeat-containing protein At3g02650, mitochondrial OS=Arabidopsis thaliana GN=At3g02650 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459
+G AFD+ + + G P ++Y L C +D ACSV E ML+ GV E +
Sbjct: 244 LGKSKAAFDVFSKTEEFGFTPNAKTYYLTLEALCKRSFMDWACSVCEKMLKSGVLSEGEQ 303
Query: 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492
+ ++ + GK + Y + +T + + P
Sbjct: 304 MGNIITWFCKEGKAEEAYSVYELAKTKEKSLPP 336
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 72/158 (45%), Gaps = 5/158 (3%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ G E++ +M + N + + + GD DMA ++ K M S G+ P + +Y
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
L C NG ++KA V E++ + P ++ +AGK + + L L S++
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNL--SLK 530
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMEN 526
V P DV+A R G K+ ++L K+ E+
Sbjct: 531 GVKP---DVVAYNTMISGFCRKGSKEEADALFKEMKED 565
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SAD9|PPR40_ARATH Pentatricopeptide repeat-containing protein At1g13040, mitochondrial OS=Arabidopsis thaliana GN=At1g13040 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 54/104 (51%)
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
++ + ++E+M + MN + T++ + + G+ +A ++ +M LG++P Y
Sbjct: 342 RKAYRLFEEMRQKGMVMNVVTYTSLIKAFLREGNSSVAKKLLDQMTELGLSPDRIFYTTI 401
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472
L C +G+VDKA V M+EH + P+ +L+ +G+
Sbjct: 402 LDHLCKSGNVDKAYGVFNDMIEHEITPDAISYNSLISGLCRSGR 445
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L6Y3|PP396_ARATH Pentatricopeptide repeat-containing protein At5g24830 OS=Arabidopsis thaliana GN=At5g24830 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF----DMVKRMKSLGINPRLRSY 425
+ E++++M VP + + R S G+ A+ DMVKR G+NP + +Y
Sbjct: 283 QALEVWKEMSQKNVPADSVVYNVIIRGLCSSGNMVAAYGFMCDMVKR----GVNPDVFTY 338
Query: 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
+S C G D+AC + M GV P++ + +++
Sbjct: 339 NTLISALCKEGKFDEACDLHGTMQNGGVAPDQISYKVIIQ 378
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ZUA2|PP141_ARATH Pentatricopeptide repeat-containing protein At2g01740 OS=Arabidopsis thaliana GN=At2g01740 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%)
Query: 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 244 CKKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDI 303
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HK
Sbjct: 304 TAYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHK 363
Query: 483 L 483
L
Sbjct: 364 L 364
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 39/83 (46%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G + A +++K MK G+ P SY P ++ FC G +D A E M+ G P+
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNY 406
Query: 461 EALLRVSVEAGKGDRVYYLLHKL 483
+L + GK D+ + KL
Sbjct: 407 NTVLATLCKNGKADQALEIFGKL 429
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%)
Query: 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460
G+ A + K MK GI P + +Y + C G + +A V ML+ G P
Sbjct: 269 GEISEAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITF 328
Query: 461 EALLRVSVEAGKGDRVYYLLHKLR 484
L+RV V+AG+ ++V + ++++
Sbjct: 329 NNLMRVHVKAGRTEKVLQVYNQMK 352
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 687 | ||||||
| 359484351 | 816 | PREDICTED: pentatricopeptide repeat-cont | 0.863 | 0.726 | 0.609 | 0.0 | |
| 297738805 | 751 | unnamed protein product [Vitis vinifera] | 0.804 | 0.736 | 0.620 | 0.0 | |
| 255546443 | 745 | multidrug resistance pump, putative [Ric | 0.774 | 0.714 | 0.616 | 0.0 | |
| 356527775 | 724 | PREDICTED: pentatricopeptide repeat-cont | 0.628 | 0.596 | 0.600 | 1e-174 | |
| 449465334 | 633 | PREDICTED: proteinaceous RNase P 1, chlo | 0.761 | 0.826 | 0.581 | 1e-168 | |
| 357520987 | 668 | Pentatricopeptide repeat-containing prot | 0.641 | 0.660 | 0.570 | 1e-158 | |
| 357520951 | 702 | Pentatricopeptide repeat-containing prot | 0.641 | 0.628 | 0.570 | 1e-158 | |
| 242064790 | 632 | hypothetical protein SORBIDRAFT_04g01032 | 0.863 | 0.938 | 0.444 | 1e-149 | |
| 224119796 | 461 | predicted protein [Populus trichocarpa] | 0.474 | 0.707 | 0.753 | 1e-142 | |
| 413936385 | 684 | hypothetical protein ZEAMMB73_755879 [Ze | 0.685 | 0.688 | 0.494 | 1e-141 |
| >gi|359484351|ref|XP_002280803.2| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 699 bits (1804), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 391/642 (60%), Positives = 462/642 (71%), Gaps = 49/642 (7%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTM-------NSTELGDSRD-----------MDNNGQLDYGS-----SP 287
+G R+LD S+ + E GD+ + NN Y + SP
Sbjct: 176 TGSRSLDMLSPSSEVRGGVSEDLAEFGDTSKKNFGGPESKIPVSNNAMSVYSTKIHQNSP 235
Query: 288 --MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345
+++ S DDLD + E + L Q SN + NSQLL+G+ +L +G DD + KK
Sbjct: 236 KKVLNSNRSAFEVAKDDLDGSITEMDKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKK 295
Query: 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM 405
+ DN EIR+SED KKYA +RGFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDM
Sbjct: 296 E---DN----EIRVSEDFKKYALRRGFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDM 348
Query: 406 AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465
AFDMVK+MK LGINPRLRSYGPALS FCNNGD++KA VEEHMLEHGVYPEEPELEALLR
Sbjct: 349 AFDMVKQMKPLGINPRLRSYGPALSAFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLR 408
Query: 466 VSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTME 525
V +EAGK D+VYY+LHKLRTSVR+VS STA++I KWF S AA GK W++ LI + +
Sbjct: 409 VGIEAGKSDKVYYVLHKLRTSVRQVSHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIV 468
Query: 526 NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIK 585
N GGGWHG GWLGKGKW VSHT VG D LC CCGEKLA IDLDP ETEKFAESVASIAIK
Sbjct: 469 NGGGGWHGQGWLGKGKWNVSHTNVGADGLCLCCGEKLATIDLDPTETEKFAESVASIAIK 528
Query: 586 RERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPL 645
RE+NSSFQKFQKWLDYYGP+EAVVDAANVGL+SQR F P++VNA+VNGIRQ PSKKWPL
Sbjct: 529 REKNSSFQKFQKWLDYYGPYEAVVDAANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPL 588
Query: 646 IVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
I+LHN+RITG KMD+P NRALIEKWKNADALY TPTGSNDDW
Sbjct: 589 IILHNKRITGKKMDEPANRALIEKWKNADALYTTPTGSNDDW 630
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738805|emb|CBI28050.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/617 (62%), Positives = 446/617 (72%), Gaps = 64/617 (10%)
Query: 80 RTRKGTASGASSLGTRDKRVDS---------AGEEKDGKRLTKDNNSRKNFAFLKSREMS 130
RT K T SG SS G++ +RV A EEK+ KR T++ S+K ++ S
Sbjct: 4 RTGKETGSGFSSYGSKGERVGRKSVKTHVGWAVEEKNEKRFTRERYSKKRLDSRRNGGTS 63
Query: 131 SGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE 190
S SL+S+ K + KS K N+K E+++ KVR EKGSKK+K D E
Sbjct: 64 SKFPSLKSESKNLVNKSLKA------NEKEEEKSKKGDADKVREEM-EKGSKKNKVDSQE 116
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
LRV L+MCSK GDVMGA+ LYD A REGI+LGQYHY VLLYLCSSAA+GV++PAKSG
Sbjct: 117 GL-LRVGLEMCSKNGDVMGALELYDSALREGIELGQYHYTVLLYLCSSAALGVIRPAKSG 175
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
+G RT FEV+ DDLD + E
Sbjct: 176 TGSRT---FEVAK-------------------------------------DDLDGSITEM 195
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370
+ L Q SN + NSQLL+G+ +L +G DD + KK+ DN EIR+SED KKYA +R
Sbjct: 196 DKLSQVSNCFNQSNSQLLEGQMHLRKGVDDSTNKKE---DN----EIRVSEDFKKYALRR 248
Query: 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430
GFEIYEKMCL++VPMNEA+LT+V RMAMSMG+GDMAFDMVK+MK LGINPRLRSYGPALS
Sbjct: 249 GFEIYEKMCLEKVPMNEATLTSVARMAMSMGNGDMAFDMVKQMKPLGINPRLRSYGPALS 308
Query: 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV 490
FCNNGD++KA VEEHMLEHGVYPEEPELEALLRV +EAGK D+VYY+LHKLRTSVR+V
Sbjct: 309 AFCNNGDIEKAFGVEEHMLEHGVYPEEPELEALLRVGIEAGKSDKVYYVLHKLRTSVRQV 368
Query: 491 SPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVG 550
S STA++I KWF S AA GK W++ LI + + N GGGWHG GWLGKGKW VSHT VG
Sbjct: 369 SHSTANLIEKWFKSNAAAAAGKGNWDQRLISEAIVNGGGGWHGQGWLGKGKWNVSHTNVG 428
Query: 551 GDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVD 610
D LC CCGEKLA IDLDP ETEKFAESVASIAIKRE+NSSFQKFQKWLDYYGP+EAVVD
Sbjct: 429 ADGLCLCCGEKLATIDLDPTETEKFAESVASIAIKREKNSSFQKFQKWLDYYGPYEAVVD 488
Query: 611 AANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKW 670
AANVGL+SQR F P++VNA+VNGIRQ PSKKWPLI+LHN+RITG KMD+P NRALIEKW
Sbjct: 489 AANVGLFSQRRFIPSKVNAIVNGIRQMLPSKKWPLIILHNKRITGKKMDEPANRALIEKW 548
Query: 671 KNADALYATPTGSNDDW 687
KNADALY TPTGSNDDW
Sbjct: 549 KNADALYTTPTGSNDDW 565
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255546443|ref|XP_002514281.1| multidrug resistance pump, putative [Ricinus communis] gi|223546737|gb|EEF48235.1| multidrug resistance pump, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/561 (61%), Positives = 423/561 (75%), Gaps = 29/561 (5%)
Query: 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG 205
K K ++ ++ + +ME++ KV+ K SK++K D ++ + R+ELD C KRG
Sbjct: 10 KERKYMDNQLISGRMEKKPRKGSDNKVKEEKSGKWSKRNKGD-PQEVKFRLELDKCCKRG 68
Query: 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265
DVM AI+LYD AQREGIK+GQYHY VLLYLCSSAA GVV+P KSG G R ++ VS
Sbjct: 69 DVMAAIQLYDLAQREGIKMGQYHYTVLLYLCSSAAAGVVQPGKSGRGGRASNSLAVSDEV 128
Query: 266 ST-------ELGDSRDMDN-----------NGQLDYGSSP-MIDKLESNSSYRFDDLDST 306
S+ EL D D+D N +D G +P DK+E SS RF+D DST
Sbjct: 129 SSASVVEFRELRDKNDVDATESDTKILNNVNKVIDSGRNPGSKDKMELKSSNRFNDSDST 188
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
NE++NL Q N Q L+ S + D + D + I +SED KKY
Sbjct: 189 SNERKNLSQIPIVVSDSNYQQLECLSFPAKNNDGKY---------HDGNGILVSEDIKKY 239
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A +RGFEIYEKMC+D++PMNEA+LTAV R+AMSMG+GDMAFDMVK+MK LG+NPRLRSYG
Sbjct: 240 ALERGFEIYEKMCMDKIPMNEATLTAVARIAMSMGNGDMAFDMVKQMKLLGLNPRLRSYG 299
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PAL+ FC++GD DKA +VE+HML+HGV+PEEPELEALLRVSVEAGKGD+VYYLLHKLRTS
Sbjct: 300 PALAAFCSSGDADKAFTVEKHMLDHGVHPEEPELEALLRVSVEAGKGDKVYYLLHKLRTS 359
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVSPSTA++I +WF SK A+R+GK KW++ ++K+ + N GGGWHG GWLGKGKW VS
Sbjct: 360 VRKVSPSTANIIIEWFKSKAASRVGKTKWDKRVVKEAIANGGGGWHGQGWLGKGKWTVSC 419
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
++VG DA CK CG+KLA IDLDP ETE FAESVASIAIKRE++SSFQKFQKWLDYYGPFE
Sbjct: 420 SSVGVDAFCKSCGKKLATIDLDPTETESFAESVASIAIKREKDSSFQKFQKWLDYYGPFE 479
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AVVD ANVGL Q+ F P+++NA+ NGIRQK PSKKWPLIVLHNRR+TGHKMD+PVN++L
Sbjct: 480 AVVDGANVGLLGQKRFIPSKINAIANGIRQKLPSKKWPLIVLHNRRVTGHKMDEPVNKSL 539
Query: 667 IEKWKNADALYATPTGSNDDW 687
+EKWK+ADALYATPTGSNDDW
Sbjct: 540 VEKWKHADALYATPTGSNDDW 560
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356527775|ref|XP_003532483.1| PREDICTED: pentatricopeptide repeat-containing protein At2g32230, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 617 bits (1590), Expect = e-174, Method: Compositional matrix adjust.
Identities = 299/498 (60%), Positives = 362/498 (72%), Gaps = 66/498 (13%)
Query: 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250
+ +L+ LDMCSKRGDVMGA+ LYD A EG+KLGQ+HY VLLYLCSSAAVGVV+PAKSG
Sbjct: 106 EVKLKNALDMCSKRGDVMGALSLYDSAISEGVKLGQHHYTVLLYLCSSAAVGVVRPAKSG 165
Query: 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310
SG RTL+ S + S E+ N FD
Sbjct: 166 SGARTLN----SHVYSNEV------------------------PNEGTHFD--------- 188
Query: 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-SEDAKKYAFQ 369
LDG++ L +++ + DEI L SED K+YA Q
Sbjct: 189 -----------------LDGKAELNS-----------DLNSTEKDEILLVSEDVKRYALQ 220
Query: 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429
RGFE+Y+ MCLD+V MNEA+LTAV RMAMSMGDGD AF+MV++MK LGI+PRLRSYGPAL
Sbjct: 221 RGFEVYQNMCLDKVQMNEAALTAVARMAMSMGDGDRAFEMVRQMKDLGISPRLRSYGPAL 280
Query: 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489
FCNNG++DKA +VE+HML+HGVYPEEPELEALLRVSV AG D+VYY+LHKLR+ VRK
Sbjct: 281 FTFCNNGEIDKAFAVEKHMLQHGVYPEEPELEALLRVSVGAGNSDKVYYVLHKLRSIVRK 340
Query: 490 VSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTV 549
VSP+T+ +I WF SK+A+R+GK+KW+E LI++ +EN GGGWHG GWLGKGKW HTT+
Sbjct: 341 VSPTTSSLIVDWFKSKQASRVGKRKWDERLIREAIENNGGGWHGQGWLGKGKWEAVHTTI 400
Query: 550 GGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVV 609
G D +CKCC +L IDLDP+ETE FA+SVAS+A+ RE+ S+FQKFQKWLDY GPFEAVV
Sbjct: 401 GKDGMCKCCQVQLTTIDLDPVETENFAKSVASLAVMREKGSNFQKFQKWLDYSGPFEAVV 460
Query: 610 DAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEK 669
DAANVGL+ Q F P ++NAV N IRQ+ PSKK+PLI+LHN+RI G KMD+P+NRALI+K
Sbjct: 461 DAANVGLFGQGRFMPHKINAVANEIRQRLPSKKFPLIILHNKRIKGDKMDEPINRALIDK 520
Query: 670 WKNADALYATPTGSNDDW 687
W NADALYATPTGSNDDW
Sbjct: 521 WNNADALYATPTGSNDDW 538
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449465334|ref|XP_004150383.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449506617|ref|XP_004162799.1| PREDICTED: proteinaceous RNase P 1, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1541), Expect = e-168, Method: Compositional matrix adjust.
Identities = 325/559 (58%), Positives = 396/559 (70%), Gaps = 36/559 (6%)
Query: 129 MSSGNSSLRSKDKKIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDR 188
M G S L++ +K S+ D K++++ K + +EKG K K +
Sbjct: 1 MGDGISFLKTSTDSASLKVSR------DGGKIKEKR------KGNQVVEEKG-KLLKGNN 47
Query: 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAK 248
F R LDMCSK GD +GAI+LY+ AQ+EGI L QYHY V+LYLCSSAA+GV++PAK
Sbjct: 48 ETPF--RANLDMCSKTGDFIGAIKLYEWAQKEGINLEQYHYAVILYLCSSAALGVIQPAK 105
Query: 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308
SG G +T + +S + S E N LD S + +Y +L ST N
Sbjct: 106 SGYGNQTSISLTLSKVGSYE--------NPIILDEQHSTKTSYVSKGGNYGRTEL-STEN 156
Query: 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAF 368
++ N S+G ++D + N+ + K W +D + I + ED KKYA
Sbjct: 157 DRSN----SDG-------MMDNKENIFH-TNGSMVPKAWILDEKSHSNILVDEDFKKYAL 204
Query: 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428
+ GFEIYEKMC + +PMNEA+LT+V RMAMSMGDGD AFDMVK+MK LG+NPRLRSYGPA
Sbjct: 205 ETGFEIYEKMCAENIPMNEATLTSVARMAMSMGDGDKAFDMVKQMKPLGLNPRLRSYGPA 264
Query: 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVR 488
LS FC NG ++KA SVE+HMLEHGVYPEEPEL ALLRVS+ A ++VYYLLHKLRTSVR
Sbjct: 265 LSTFCKNGKLEKAFSVEKHMLEHGVYPEEPELAALLRVSINASNAEKVYYLLHKLRTSVR 324
Query: 489 KVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTT 548
+V PSTAD+I WF SK+AAR+GK K + +IK + N GGGWHGLGWLG+GKW VS T
Sbjct: 325 QVLPSTADLIITWFKSKDAARVGKVKLDRKIIKKAIGNGGGGWHGLGWLGRGKWSVSSTN 384
Query: 549 VGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608
VG D LCK CGEKLA IDLDPIETE FAESVA+I +RE+NSSFQKFQKWL+YYGPFEAV
Sbjct: 385 VGKDGLCKSCGEKLATIDLDPIETENFAESVAAIVTQREKNSSFQKFQKWLEYYGPFEAV 444
Query: 609 VDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIE 668
+DAANVGL+SQR F P++VN + NGIRQK PSKKWPLI+LHNRRITG KM++PVN+ LIE
Sbjct: 445 IDAANVGLFSQRKFAPSKVNLIANGIRQKLPSKKWPLIILHNRRITGRKMEEPVNKTLIE 504
Query: 669 KWKNADALYATPTGSNDDW 687
KWKNADALYATPTGSNDDW
Sbjct: 505 KWKNADALYATPTGSNDDW 523
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520987|ref|XP_003630782.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524804|gb|AET05258.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 565 bits (1456), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/501 (57%), Positives = 348/501 (69%), Gaps = 60/501 (11%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 75 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 117
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 118 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 149
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD + I +SE K+Y
Sbjct: 150 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKD----RDKRNGIMVSEVVKEY 194
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 195 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 254
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 255 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 314
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 315 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 374
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 375 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 434
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 435 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 494
Query: 667 IEKWKNADALYATPTGSNDDW 687
+++W NA+ LYATPTGSNDDW
Sbjct: 495 VDRWNNANVLYATPTGSNDDW 515
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357520951|ref|XP_003630764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355524786|gb|AET05240.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 564 bits (1454), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/501 (57%), Positives = 348/501 (69%), Gaps = 60/501 (11%)
Query: 187 DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246
D Q +LRV LD CSKRGD+ G +HY VLLYLCSSAA+G ++P
Sbjct: 109 DTPPQAKLRVSLDQCSKRGDLKG-----------------HHYTVLLYLCSSAAIGGLRP 151
Query: 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306
AKSGSG RTL+ +VS+ N NG +D R DD D
Sbjct: 152 AKSGSGTRTLNA-QVSSNNL-----------NGSVD----------------RNDDDDER 183
Query: 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY 366
F + +++LLD ++ D KD + I +SE K+Y
Sbjct: 184 FCSDSD-----------DNKLLDNSVSVSHSDDSDMNDKD----RDKRNGIMVSEVVKEY 228
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426
A QRGFE+YE M + +V MNEA+LT+V RMAM++ DGD AF+MVK+MK LGINPRLRSYG
Sbjct: 229 ALQRGFEVYENMRMSKVEMNEAALTSVARMAMALSDGDKAFEMVKQMKILGINPRLRSYG 288
Query: 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
PALS +CNNG++DKA VE+HMLEHGVYPEEPELEALLRVS+ GK DRVYY+LHKLR+S
Sbjct: 289 PALSTYCNNGEIDKAFDVEKHMLEHGVYPEEPELEALLRVSIRGGKSDRVYYVLHKLRSS 348
Query: 487 VRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSH 546
VRKVS +TAD+I WF SK A ++GK+KW+ LI M+N GGGWHG GWLGKGKW V
Sbjct: 349 VRKVSTTTADLIVDWFKSKIALKVGKRKWDNGLIMKAMQNNGGGWHGTGWLGKGKWQVLQ 408
Query: 547 TTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFE 606
T+V D +CKCCG +LA IDLDP+ETE FA+SVASIAI E+NS+FQ FQKWLDYYGPFE
Sbjct: 409 TSVRKDGMCKCCGVQLATIDLDPVETENFAKSVASIAISNEKNSNFQTFQKWLDYYGPFE 468
Query: 607 AVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRAL 666
AV+DAANVGLYSQ F P+++NAVVN +RQK PSKK+PLIVLH+RRI G K D P+N+AL
Sbjct: 469 AVIDAANVGLYSQGKFMPSKINAVVNELRQKLPSKKFPLIVLHHRRIKGDKRDVPINKAL 528
Query: 667 IEKWKNADALYATPTGSNDDW 687
+++W NA+ LYATPTGSNDDW
Sbjct: 529 VDRWNNANVLYATPTGSNDDW 549
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242064790|ref|XP_002453684.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor] gi|241933515|gb|EES06660.1| hypothetical protein SORBIDRAFT_04g010320 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 535 bits (1377), Expect = e-149, Method: Compositional matrix adjust.
Identities = 295/664 (44%), Positives = 397/664 (59%), Gaps = 71/664 (10%)
Query: 42 SSSPP---KRTPLLVFKAHVRNTQAKLSTTETEHETSTVTLRTRKGTASGASSLGTRDKR 98
SSSPP +R P+ H R+ L T +R G A R
Sbjct: 22 SSSPPIVTRRCPVPTLSCHGRDV---LDVMPNRDSRIPGTEESRAGPAGPPRGTNGPTVR 78
Query: 99 VDSAGEE------KDGKRLTKDNNSRKNFAFLKSRE--MSSGNSSLRSKDKKIG---IKS 147
D+ +E ++G R + + L+ R +S S R + +G ++
Sbjct: 79 EDATAQEARTPLWREGSRGAPRTWRKGDRVVLQERVEWVSQERSWRRGLTRSLGSEGPRA 138
Query: 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRG 205
K RE + + ++ + G + G SKK K+ + ++ +LRVELDMCSKRG
Sbjct: 139 GKRWTREGNGMRAKE-SGKVGNSRDEGTGRRNASKKMKRSKGGEYAGKLRVELDMCSKRG 197
Query: 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265
DVMGAI LYD A EG++LGQ+HYNVLLYLCSSA++G V+PAKSG+
Sbjct: 198 DVMGAIALYDSAVEEGVRLGQHHYNVLLYLCSSASLGFVQPAKSGN-------------- 243
Query: 266 STELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS 325
++G +G S + L S + + D++ ++LG K +
Sbjct: 244 ----------TSSGIASFGPSQKLGPLPSGNLGGSEGDDASEGHVQDLG-------KNKA 286
Query: 326 QLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--V 383
LL G S + I + +D ++YA RGFEI+EKMC ++ V
Sbjct: 287 SLLPGGSKAQ------------------TVSIPVGDDLREYACARGFEIFEKMCSEKERV 328
Query: 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443
M+EA+LTA RMA+SMGD DMAF++VK+MK LG+ P+LRSYGPAL+ FCN G+V+KA
Sbjct: 329 QMSEAALTAKARMALSMGDSDMAFEIVKQMKDLGLKPKLRSYGPALTAFCNGGNVEKAFE 388
Query: 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFN 503
VE HMLE G+ PEE ELE LLR SV +GD+VYYL+HK RT+VR+VSPSTA++ WF
Sbjct: 389 VEAHMLESGITPEEAELETLLRASVVGRRGDKVYYLMHKFRTTVRQVSPSTAELFEVWFR 448
Query: 504 SKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA 563
S A+++GK+KW+ I +EN GGGWHG GWLG+GKW V+ + + + +C CGEKLA
Sbjct: 449 SPTASKVGKRKWDTGAIVKAIENNGGGWHGFGWLGRGKWTVTRSNINKNGVCLACGEKLA 508
Query: 564 IIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFK 623
IIDLDP ETE FA VA +AIKRERNS+F+ FQKWL +GPFEAVVDAANVGL+ R+
Sbjct: 509 IIDLDPKETEDFATFVAKLAIKRERNSNFENFQKWLKKHGPFEAVVDAANVGLFGHRHLS 568
Query: 624 PARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGS 683
++VNAV + IR +F S+KWPLIVLHN+ +TG M +P N L+EKWK A+++YATPTGS
Sbjct: 569 LSKVNAVADAIRLRFTSRKWPLIVLHNKHLTGEHMKKPGNHKLVEKWKQANSIYATPTGS 628
Query: 684 NDDW 687
NDDW
Sbjct: 629 NDDW 632
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224119796|ref|XP_002331163.1| predicted protein [Populus trichocarpa] gi|222873246|gb|EEF10377.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1317), Expect = e-142, Method: Compositional matrix adjust.
Identities = 248/329 (75%), Positives = 290/329 (88%), Gaps = 3/329 (0%)
Query: 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418
SED KKYA QRG EI+EKMC ++VP+NEA+LTAV RMAMS+G+GD+AF+MVK+M +LGI
Sbjct: 62 FSEDVKKYALQRGCEIFEKMCKEKVPINEATLTAVARMAMSIGNGDLAFEMVKQMDALGI 121
Query: 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478
NP+LRSYGPALSVFC++GD+DKA VE+HMLEHGVYPEEPEL+ALLRVSVE GKGD+VYY
Sbjct: 122 NPKLRSYGPALSVFCSSGDIDKAFYVEKHMLEHGVYPEEPELKALLRVSVEGGKGDKVYY 181
Query: 479 LLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLG 538
LLHKLR VR+VSPSTA +I +WFNSK A+R+GK KW+ +K+ +EN GGGWHG GWLG
Sbjct: 182 LLHKLRRIVRRVSPSTAGIIVRWFNSKAASRVGKTKWD---VKEAIENGGGGWHGQGWLG 238
Query: 539 KGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKW 598
KGKW VS T+VG D +CK CG+KL IDLD +ETEKFAESVASIAIKR+R+SSFQ+FQKW
Sbjct: 239 KGKWTVSCTSVGLDGICKYCGQKLTTIDLDAVETEKFAESVASIAIKRDRDSSFQRFQKW 298
Query: 599 LDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKM 658
LDYYGPFEAV+D AN G+Y+Q F P+++NAVVNGIRQK PSKKWPLIVLHN+RITG KM
Sbjct: 299 LDYYGPFEAVIDGANAGIYNQGRFMPSKINAVVNGIRQKLPSKKWPLIVLHNKRITGRKM 358
Query: 659 DQPVNRALIEKWKNADALYATPTGSNDDW 687
D PVN+A IEKWKNADALYATPTGSNDDW
Sbjct: 359 DGPVNKAFIEKWKNADALYATPTGSNDDW 387
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413936385|gb|AFW70936.1| hypothetical protein ZEAMMB73_755879 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1308), Expect = e-141, Method: Compositional matrix adjust.
Identities = 260/526 (49%), Positives = 342/526 (65%), Gaps = 55/526 (10%)
Query: 168 GQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225
G + G KK KK ++ +LRVELDMCSKRGDVMGAI LYD A EGIKLG
Sbjct: 111 GNSRDEGTGRRNACKKMKKPPDGEYAGKLRVELDMCSKRGDVMGAITLYDSAVEEGIKLG 170
Query: 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS--TELGDSRDMDNNGQLDY 283
Q+HYNVLLYLCSSA++G V+PAKSG+ M S +G ++ +D +
Sbjct: 171 QHHYNVLLYLCSSASLGFVQPAKSGN------------MGSGIASIGPAQKLDPSPSRSL 218
Query: 284 GSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343
G S + S S + ++ +N G +K +
Sbjct: 219 GGSEGDNAYASESHVQ--------DQGKNKADLIPGGLKAQTV----------------- 253
Query: 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMG 401
I + ++ YA RGFEI++KMC ++ V M+EA+LTA RMA+SMG
Sbjct: 254 ------------SIPVEDELGDYARARGFEIFDKMCSEKERVQMSEAALTAKARMALSMG 301
Query: 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461
D DMAF++VK+MK LG+ P+LRSYGPAL+ FCN+G+V+KA VE HMLE G+ PEE ELE
Sbjct: 302 DSDMAFEIVKQMKGLGLKPKLRSYGPALTAFCNSGNVEKAFEVEAHMLESGITPEEAELE 361
Query: 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIK 521
LLR SV +GD+VYYLLHK RT+VR+VS STA++ WF S A+++GK+KW+ I
Sbjct: 362 TLLRASVVGRRGDKVYYLLHKFRTAVRQVSHSTAELFEAWFRSPTASKVGKRKWDAGAIA 421
Query: 522 DTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVAS 581
+EN GGGWHG GWLG+GKW V+H+ + + +C CGEKLAIIDLDP ETE FA VA
Sbjct: 422 KAIENNGGGWHGFGWLGRGKWTVAHSNINENGVCLACGEKLAIIDLDPKETEDFATFVAK 481
Query: 582 IAIKRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSK 641
+AIKRER S+F+ FQKWL+ +GPFEAVVDAANVGL+S ++ ++VN+V + IR +F SK
Sbjct: 482 LAIKRERKSNFENFQKWLEKHGPFEAVVDAANVGLFSHKHLSLSKVNSVADAIRLRFTSK 541
Query: 642 KWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
KWPLIVLHN+ + G +M + + L++KWK +++YATPTGSNDDW
Sbjct: 542 KWPLIVLHNKHLIGERMKKLNDHKLVQKWKQENSIYATPTGSNDDW 587
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Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 687 | ||||||
| TAIR|locus:2045432 | 572 | PRORP1 "proteinaceous RNase P | 0.477 | 0.573 | 0.478 | 2.3e-99 | |
| TAIR|locus:2059824 | 528 | PRORP2 "proteinaceous RNase P | 0.465 | 0.606 | 0.377 | 2.9e-68 | |
| TAIR|locus:2141662 | 576 | PRORP3 "AT4G21900" [Arabidopsi | 0.465 | 0.555 | 0.377 | 6.1e-66 | |
| TAIR|locus:2175178 | 156 | AT5G60430 [Arabidopsis thalian | 0.114 | 0.506 | 0.413 | 4.1e-12 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.455 | 0.496 | 0.229 | 4.7e-05 | |
| TAIR|locus:2065428 | 559 | AT2G01740 "AT2G01740" [Arabido | 0.174 | 0.214 | 0.258 | 0.00018 | |
| TAIR|locus:2197424 | 664 | EMB3103 "EMBRYO DEFECTIVE 3103 | 0.177 | 0.183 | 0.237 | 0.00051 | |
| TAIR|locus:2084978 | 602 | AT3G04760 [Arabidopsis thalian | 0.168 | 0.192 | 0.25 | 0.00089 |
| TAIR|locus:2045432 PRORP1 "proteinaceous RNase P 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 813 (291.2 bits), Expect = 2.3e-99, Sum P(2) = 2.3e-99
Identities = 157/328 (47%), Positives = 216/328 (65%)
Query: 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+E + RGF+I+++M +D+V NEA+ T R+A++ D +MAFDMVK+MK+ GI
Sbjct: 149 TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ 208
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
PRLRSYGPAL FC GD DKA V+ HM+E V PEEPEL ALL+VS++ D+VY
Sbjct: 209 PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKT 268
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAARLGKKKWNESLIKDTMENXXXXXXXXXXXXX 539
L +LR VR+VS ST D+I +WF S+ A + G KKW+ I+D + +
Sbjct: 269 LQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGT 328
Query: 540 XXXIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWL 599
V T + + +CKCC EKL ID++P+ETE FA S+ +A +RE ++F +FQ+WL
Sbjct: 329 GKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWL 388
Query: 600 DYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMD 659
+ +GPF+AV+D AN+GL +QR+F ++N V +Q PSK+ PL++LH R+ G
Sbjct: 389 ERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPAT 448
Query: 660 QPVNRALIEKWKNADALYATPTGSNDDW 687
P NRAL+EKWKNA ALYATP GSNDDW
Sbjct: 449 YPKNRALLEKWKNAGALYATPPGSNDDW 476
|
|
| TAIR|locus:2059824 PRORP2 "proteinaceous RNase P 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 592 (213.5 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
Identities = 127/336 (37%), Positives = 193/336 (57%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGFEI+++M + NEAS+T+V R+A + G+GD AF +VK S+G ++ PRLR+
Sbjct: 89 AIDRGFEIFDRMVSSGISPNEASVTSVARLAAAKGNGDYAFKVVKEFVSVGGVSIPRLRT 148
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC + +K VEEHM G+ EE E+ ALL+VS G+ ++VY LHKLR
Sbjct: 149 YAPALLCFCEKLEAEKGYEVEEHMEAAGIALEEAEISALLKVSAATGRENKVYRYLHKLR 208
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T +I +WF ++A +G ++++ + N
Sbjct: 209 EYVGCVSEETLKIIEEWFCGEKAGEVGDNGIGSDVGMLREAVLNNGGGWHGHGWVGEGKW 268
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKR-------ERNSSFQKF 595
V V C C E+LA +D + +ET+KF +S+ ++A+ R E N F +F
Sbjct: 269 TVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMDRKTKMNSCETNVVFSEF 328
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q WL+ +G +EA+VD AN+GLY Q +F +++ +V+ + ++ + KWPLI+LH R
Sbjct: 329 QDWLEKHGDYEAIVDGANIGLYQQNFVDGSFSLSQLESVMKELYRESGNNKWPLILLHKR 388
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
R+ ++ P +R L+E+W + LYATP GSNDDW
Sbjct: 389 RVKT-LLENPTHRNLVEEWISNGVLYATPPGSNDDW 423
|
|
| TAIR|locus:2141662 PRORP3 "AT4G21900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 567 (204.7 bits), Expect = 6.1e-66, Sum P(2) = 6.1e-66
Identities = 127/336 (37%), Positives = 190/336 (56%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-IN-PRLRS 424
A RGF+I+++M + NE+S+TAV R+A + GDGD AF +VK + ++G ++ PRLR+
Sbjct: 148 AIDRGFQIFDRMVSSGISPNESSVTAVARLAAAKGDGDYAFKLVKDLVAVGGVSVPRLRT 207
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y PAL FC+ + +K VE+HM G+ EE E+ ALL+VS G+ ++VY L KLR
Sbjct: 208 YAPALLCFCDTLEAEKGYEVEDHMDASGIVLEEAEISALLKVSAATGRENKVYRYLQKLR 267
Query: 485 TSVRKVSPSTADVIAKWFNSKEAARLGKKKWNES--LIKDTMENXXXXXXXXXXXXXXXX 542
V VS T+ I +WF +A+ + L++ +
Sbjct: 268 ECVGCVSEETSKAIEEWFYGVKASEVSDNGIGSDIELLRAAVLKNGGGWHGLGWVGEGKW 327
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NS-----SFQKF 595
IV V C C E LA +D + +ETE F S+ ++A++R+ NS F +F
Sbjct: 328 IVKKGNVSSAGKCLSCDEHLACVDTNEVETEDFVNSLVTLAMERKAKMNSCEPMADFSEF 387
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQR----NFKPARVNAVVNGIRQKFPSKKWPLIVLHNR 651
Q+WL+ +G +EA++D AN+GLY Q F ++ AVV + K SKK PLI+LH +
Sbjct: 388 QEWLEKHGDYEAILDGANIGLYQQNFADGGFSLPQLEAVVKELYNKSGSKKQPLILLHKK 447
Query: 652 RITGHKMDQPVNRALIEKWKNADALYATPTGSNDDW 687
R+ ++ P +R L+E+W N + LYATP GSNDDW
Sbjct: 448 RVNA-LLENPNHRNLVEEWINNNVLYATPPGSNDDW 482
|
|
| TAIR|locus:2175178 AT5G60430 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 173 (66.0 bits), Expect = 4.1e-12, P = 4.1e-12
Identities = 36/87 (41%), Positives = 55/87 (63%)
Query: 543 IVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAIKRER--NSS-----FQKF 595
IV V C C E+LA +D + +ET+KF +S+ ++A++R+ NS F +F
Sbjct: 25 IVKKGNVSSTGRCLSCSEQLACVDTNEVETQKFVDSLVALAMERKAKMNSCESDVVFSEF 84
Query: 596 QKWLDYYGPFEAVVDAANVGLYSQRNF 622
Q WL+ +G +EA+VD AN+GLY Q+NF
Sbjct: 85 QDWLEKHGDYEAIVDGANIGLY-QQNF 110
|
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 132 (51.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 80/349 (22%), Positives = 154/349 (44%)
Query: 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY-LCS----SAAVGVVKPAKSGSGMR 254
+C KRGD A L +K ++ ++ G YN ++ LC A+ + K ++ G+R
Sbjct: 231 LC-KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMET-KGIR 288
Query: 255 TLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314
+ S++ S R D + L S MI++ + + F L F ++ L
Sbjct: 289 P-NVVTYSSLISCLCNYGRWSDASRLL----SDMIERKINPDVFTFSALIDAFVKEGKLV 343
Query: 315 QFSNGHMKLNSQLLDGR----SNLERG---PD--DQSRKK-DWSIDNQDADEI----RLS 360
+ + ++ + +D S+L G D D++++ ++ + ++ L
Sbjct: 344 EAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLI 403
Query: 361 EDAKKYA-FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419
+ KY + G E++ +M + N + + + GD DMA ++ K M S G+
Sbjct: 404 KGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP 463
Query: 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479
P + +Y L C NG ++KA V E++ + P ++ +AGK + + L
Sbjct: 464 PNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDL 523
Query: 480 LHKLRTSVRKVSPSTADVIAKWFNSKEAA--RLGKKKWNESLIKDTMEN 526
L S++ V P DV+A +N+ + R G K+ ++L K+ E+
Sbjct: 524 FCNL--SLKGVKP---DVVA--YNTMISGFCRKGSKEEADALFKEMKED 565
|
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| TAIR|locus:2065428 AT2G01740 "AT2G01740" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 0.00018, P = 0.00018
Identities = 31/120 (25%), Positives = 53/120 (44%)
Query: 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423
KK QR E+Y +M D V N T + GD D A + +M + G+ +
Sbjct: 245 KKGEMQRAEEMYSRMVEDRVEPNSLVYTTIIDGFFQRGDSDNAMKFLAKMLNQGMRLDIT 304
Query: 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
+YG +S C NG + +A + E M + + P+ ++ ++G+ + HKL
Sbjct: 305 AYGVIISGLCGNGKLKEATEIVEDMEKSDLVPDMVIFTTMMNAYFKSGRMKAAVNMYHKL 364
|
|
| TAIR|locus:2197424 EMB3103 "EMBRYO DEFECTIVE 3103" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 105 (42.0 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 29/122 (23%), Positives = 57/122 (46%)
Query: 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
K + + E+ ++ + + M+ V + S G + A + +++MK G +P +
Sbjct: 215 KNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVEGHSPNIYH 274
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y L+ + GD KA + M G+ P + + LL+V ++ G DR LL +L
Sbjct: 275 YSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRSRELLSELE 334
Query: 485 TS 486
++
Sbjct: 335 SA 336
|
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| TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 117 (46.2 bits), Expect = 0.00089, Sum P(2) = 0.00089
Identities = 29/116 (25%), Positives = 52/116 (44%)
Query: 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGP 427
++ G ++ KM ++ N + + + G + A +++K MK G+ P SY P
Sbjct: 314 WEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDP 373
Query: 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483
++ FC G +D A E M+ G P+ +L + GK D+ + KL
Sbjct: 374 LIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKL 429
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | Sb04g010320.1 | hypothetical protein (632 aa) | |||||||||
(Sorghum bicolor) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 687 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-05 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 2/122 (1%)
Query: 367 AFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424
A R F++ +M + P++ +T A+ + + G D A ++ + + I
Sbjct: 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV 616
Query: 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484
Y A++ GD D A S+ + M + GV P+E AL+ V+ AG D+ + +L R
Sbjct: 617 YTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR 676
Query: 485 TS 486
Sbjct: 677 KQ 678
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Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 25/113 (22%), Positives = 48/113 (42%)
Query: 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433
IY+ M V +E +A+ +A GD D AF++++ + GI SY +
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486
N + KA + E + + P + AL+ E + + +L +++
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
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Length = 1060 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.002
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP 455
L +Y L GD D A +V E M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
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This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 687 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.7 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.6 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.45 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.43 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.42 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.41 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.29 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.23 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.05 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.94 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.82 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.81 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.78 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 98.71 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.65 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.6 | |
| PF11977 | 155 | RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domai | 98.59 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.57 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.49 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.46 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.44 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.4 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 98.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.32 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.32 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 98.25 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.22 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.18 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.16 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.15 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.07 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 97.93 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.91 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.89 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.85 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 97.84 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.83 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.82 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 97.82 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.67 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.65 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.64 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 97.63 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.55 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.52 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 97.49 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 97.48 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 97.47 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.41 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.17 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.11 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.09 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.0 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.96 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.94 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.88 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 96.68 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.68 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.67 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 96.63 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 96.55 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 96.49 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 96.47 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 96.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.31 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 96.3 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 96.28 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 96.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 96.26 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.2 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 96.17 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 96.08 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 96.07 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 96.05 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 96.05 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.01 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 95.97 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 95.95 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.94 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.91 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.89 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 95.87 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 95.84 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.82 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.73 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 95.71 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 95.54 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 95.53 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 95.47 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 95.45 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 95.38 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.38 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.32 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 95.21 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 95.18 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 95.06 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 94.93 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 94.89 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 94.87 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 94.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 94.75 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.72 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 94.66 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 94.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 94.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 94.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 94.27 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 94.25 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.07 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 94.0 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 93.99 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.94 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 93.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 93.83 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.82 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 93.77 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 93.75 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 93.73 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 93.55 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 93.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 93.5 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 93.36 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 93.3 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 93.29 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 93.17 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 93.11 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 93.1 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 92.92 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 92.88 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 92.72 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 92.49 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 92.35 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 92.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 91.97 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 91.93 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 91.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 91.8 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 91.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 91.06 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 90.95 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 90.92 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 90.79 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 90.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 90.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 90.24 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 90.24 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 90.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 90.13 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 90.11 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 89.67 | |
| PLN02789 | 320 | farnesyltranstransferase | 89.53 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 89.15 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 89.04 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 87.77 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 87.68 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 87.63 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 87.32 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 86.96 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 86.88 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 86.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 86.68 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 86.4 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 85.94 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 85.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 85.78 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 85.74 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 84.92 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 84.85 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 84.11 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 83.69 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 83.33 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 83.28 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.48 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 82.17 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 82.09 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 81.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 81.57 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 80.64 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 80.59 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=506.69 Aligned_cols=363 Identities=14% Similarity=0.162 Sum_probs=331.3
Q ss_pred hHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCC--------------------------CCCCcHHHHHHHHHHH
Q 005628 148 SKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSK--------------------------KDRSEQFQLRVELDMC 201 (687)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~--------------------------g~~P~~~tyn~lI~~~ 201 (687)
...+...+. .+.+.++..+|+++|++|.+.|..+.. -..||..+||.+|.+|
T Consensus 370 ~~~~~~~y~--~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 370 SPEYIDAYN--RLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVC 447 (1060)
T ss_pred chHHHHHHH--HHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 445566665 677889999999999999887754311 0138999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-Cccc
Q 005628 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ 280 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~t 280 (687)
++.|++++|+++|++|++.|+.||.++||+||++|+ ++|++++|.++|+ +|.+. |+. |.+|
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~----------k~G~vd~A~~vf~-------eM~~~-Gv~PdvvT 509 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCA----------KSGKVDAMFEVFH-------EMVNA-GVEANVHT 509 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------hCcCHHHHHHHHH-------HHHHc-CCCCCHHH
Confidence 999999999999999999999999999999999999 9999999999994 88887 887 9999
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcc--cCCCCChhh
Q 005628 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRK--KDWSIDNQD 353 (687)
Q Consensus 281 yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~--~g~~pd~~t 353 (687)
||+||++ |++.|++++|.++|++|.+.|+.||.+||+ .+|.+|| +.|..+|.+|.. .|+.||.++
T Consensus 510 ynaLI~g------y~k~G~~eeAl~lf~~M~~~Gv~PD~vTYn--sLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vT 581 (1060)
T PLN03218 510 FGALIDG------CARAGQVAKAFGAYGIMRSKNVKPDRVVFN--ALISACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581 (1060)
T ss_pred HHHHHHH------HHHCcCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHH
Confidence 9999999 999999999999999999999999999999 9999998 567779999976 689999999
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
||+ ||++|++.|++++|.++|++|.+.|+.|+..+||+||.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus 582 yna-LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~ 660 (1060)
T PLN03218 582 VGA-LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG 660 (1060)
T ss_pred HHH-HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHH-HHHHHcCHHHHHh
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARL 510 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a 510 (687)
+.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|... ++.|+ +|++ |.++|+.+..
T Consensus 661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~--g~~PdvvtyN~LI~gy~k~G~~--- 735 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSI--KLRPTVSTMNALITALCEGNQL--- 735 (1060)
T ss_pred hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHCCCH---
Confidence 99999999999999999999999999999999999999999999999999998 77777 8988 8888887764
Q ss_pred hcccchhhHHHHHhhhcCCcccccccCCCCccEEEeeeecCCCcccccc
Q 005628 511 GKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCG 559 (687)
Q Consensus 511 ~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~ 559 (687)
++|++ +|.+|...|+.||.+|| +.++.++|+.+.
T Consensus 736 ----------eeAle----lf~eM~~~Gi~Pd~~Ty-~sLL~a~~k~G~ 769 (1060)
T PLN03218 736 ----------PKALE----VLSEMKRLGLCPNTITY-SILLVASERKDD 769 (1060)
T ss_pred ----------HHHHH----HHHHHHHcCCCCCHHHH-HHHHHHHHHCCC
Confidence 55556 88888888888888888 666677777665
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=505.37 Aligned_cols=418 Identities=12% Similarity=0.135 Sum_probs=293.8
Q ss_pred CccchHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 005628 144 GIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIK 223 (687)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~ 223 (687)
..+...+||..+. .+++.++.++|.++|++|.+. |+.||.++||+||++|++.|++++|+++|++|...|+.
T Consensus 468 l~pD~~tynsLI~--~y~k~G~vd~A~~vf~eM~~~------Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~ 539 (1060)
T PLN03218 468 LKADCKLYTTLIS--TCAKSGKVDAMFEVFHEMVNA------GVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK 539 (1060)
T ss_pred CCCCHHHHHHHHH--HHHhCcCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC
Confidence 3445555555555 555666666666666666333 44555577777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc-CCCC-CccchhccccccccccccccCCChh
Q 005628 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMD-NNGQLDYGSSPMIDKLESNSSYRFD 301 (687)
Q Consensus 224 pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~-~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~ 301 (687)
||.+|||+||.+|+ +.|++++|.++|. +|... .|+. |.++||+||++ |++.|+++
T Consensus 540 PD~vTYnsLI~a~~----------k~G~~deA~~lf~-------eM~~~~~gi~PD~vTynaLI~a------y~k~G~ld 596 (1060)
T PLN03218 540 PDRVVFNALISACG----------QSGAVDRAFDVLA-------EMKAETHPIDPDHITVGALMKA------CANAGQVD 596 (1060)
T ss_pred CCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHhcCCCCCcHHHHHHHHHH------HHHCCCHH
Confidence 77777777777777 6777777777773 66542 2555 67777777777 77777777
Q ss_pred hHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHH
Q 005628 302 DLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE 376 (687)
Q Consensus 302 ~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (687)
+|.++|++|.+.|+.|+.++|+ .+|.+|| ++|..+|.+|...|+.||.++|++ ||++|++.|++++|.++|+
T Consensus 597 eA~elf~~M~e~gi~p~~~tyn--sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns-LI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 597 RAKEVYQMIHEYNIKGTPEVYT--IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA-LVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred HHHHHHHHHHHcCCCCChHHHH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHH
Confidence 7777777777777777777777 7777777 455667778888888888888877 7788888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005628 377 KMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 377 ~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
+|.+.|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||..+||+||.+||+.|++++|.++|++|.+.|+.||
T Consensus 674 eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 674 DARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888887777788888888888888888888888888888887788888
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHcCHHHHHhhcc-----cchh-------hHHHH
Q 005628 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKK-----KWNE-------SLIKD 522 (687)
Q Consensus 457 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~-----~~~~-------~~v~e 522 (687)
..||++||.+|++.|++++|.++|.+|.+. |+.|+ +|+.|.++|... ..+++.. .|+. ....+
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~--Gi~pd~~tynsLIglc~~~-y~ka~~l~~~v~~f~~g~~~~~n~w~~~ 830 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKED--GIKPNLVMCRCITGLCLRR-FEKACALGEPVVSFDSGRPQIENKWTSW 830 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHH-HHHHhhhhhhhhhhhccccccccchHHH
Confidence 888888888888888888888888888777 55555 677766666531 2222210 1111 12356
Q ss_pred HhhhcCCcccccccCCCCccEEEeeeecCCCcccccccccc-----cccCCH-----HHHHHHHHHHHHHHHhhhcchhH
Q 005628 523 TMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLA-----IIDLDP-----IETEKFAESVASIAIKRERNSSF 592 (687)
Q Consensus 523 a~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~~~L~-----~~~l~~-----~e~~~l~~~i~~~~~~~~~~~~~ 592 (687)
|+. +|++|...|+.||.+||+. ++.++|..++..+. .+.+.+ ..|..+++.+ + ....++|
T Consensus 831 Al~----lf~eM~~~Gi~Pd~~T~~~-vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~--~~~~~A~ 900 (1060)
T PLN03218 831 ALM----VYRETISAGTLPTMEVLSQ-VLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---G--EYDPRAF 900 (1060)
T ss_pred HHH----HHHHHHHCCCCCCHHHHHH-HHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---c--cChHHHH
Confidence 777 9999999999999999954 44777776654321 121111 2344444433 1 1124689
Q ss_pred HHHHHHHhhcCCccEE
Q 005628 593 QKFQKWLDYYGPFEAV 608 (687)
Q Consensus 593 ~~F~~~l~~~~~yd~v 608 (687)
..|+++...+..+++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 9999999888655554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-49 Score=459.97 Aligned_cols=295 Identities=11% Similarity=0.076 Sum_probs=207.4
Q ss_pred HhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005628 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (687)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (687)
.+++..+. .+.+.++..+|+++|+.|...+ +..||..+|+++|.+|++.++++.|.+++..|++.|+.||..+
T Consensus 88 ~~~~~~i~--~l~~~g~~~~Al~~f~~m~~~~-----~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~ 160 (697)
T PLN03081 88 VSLCSQIE--KLVACGRHREALELFEILEAGC-----PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160 (697)
T ss_pred eeHHHHHH--HHHcCCCHHHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHH
Confidence 35666666 7778999999999999995432 3568889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHH
Q 005628 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 229 yn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
||.||++|+ ++|++++|.++|+ +|.+ +|.++||+||.+ |++.|++++|.++|+
T Consensus 161 ~n~Li~~y~----------k~g~~~~A~~lf~-------~m~~----~~~~t~n~li~~------~~~~g~~~~A~~lf~ 213 (697)
T PLN03081 161 MNRVLLMHV----------KCGMLIDARRLFD-------EMPE----RNLASWGTIIGG------LVDAGNYREAFALFR 213 (697)
T ss_pred HHHHHHHHh----------cCCCHHHHHHHHh-------cCCC----CCeeeHHHHHHH------HHHCcCHHHHHHHHH
Confidence 999999999 9999999999995 6654 389999999999 999999999999999
Q ss_pred HHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
+|.+.|+.||..||+ .++.+++ ..+..++..+.+.|+.||..+||+ ||++|++.|++++|.++|++|..
T Consensus 214 ~M~~~g~~p~~~t~~--~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~--- 287 (697)
T PLN03081 214 EMWEDGSDAEPRTFV--VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA-LIDMYSKCGDIEDARCVFDGMPE--- 287 (697)
T ss_pred HHHHhCCCCChhhHH--HHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH-HHHHHHHCCCHHHHHHHHHhCCC---
Confidence 999999999888887 6665554 223334555555555555555555 55555555555555555555532
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
+|+++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++++|.+.|+.||..+||+|
T Consensus 288 -~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~L 366 (697)
T PLN03081 288 -KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366 (697)
T ss_pred -CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHH
Confidence 3455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 005628 464 LRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~ 484 (687)
|++|++.|++++|.++|++|.
T Consensus 367 i~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 367 VDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC
Confidence 555555555555555555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-48 Score=464.76 Aligned_cols=422 Identities=13% Similarity=0.041 Sum_probs=336.8
Q ss_pred chHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005628 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (687)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (687)
.+..+|..+. .+.+.++.++|+++|++|. .||+++||++|.+|++.|++++|+++|++|...|+.||.
T Consensus 120 ~~~~~n~li~--~~~~~g~~~~A~~~f~~m~----------~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~ 187 (857)
T PLN03077 120 GVRLGNAMLS--MFVRFGELVHAWYVFGKMP----------ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDV 187 (857)
T ss_pred CchHHHHHHH--HHHhCCChHHHHHHHhcCC----------CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 3444555555 5667777777777777772 245577777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHhcccC----C---------------------cccCCCCchhhhhhhhhhcccccccccccCCCCCccch
Q 005628 227 YHYNVLLYLCSSAAVG----V---------------------VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (687)
Q Consensus 227 ~tyn~Ll~~~~~~~~~----~---------------------~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ty 281 (687)
+||+++|++|++.+.. . .-|.++|++++|..+|+ +|... |.++|
T Consensus 188 ~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~-------~m~~~----d~~s~ 256 (857)
T PLN03077 188 YTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFD-------RMPRR----DCISW 256 (857)
T ss_pred hHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHh-------cCCCC----Ccchh
Confidence 7777777776643211 0 00559999999999996 55443 88999
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHH
Q 005628 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADE 356 (687)
Q Consensus 282 n~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~ 356 (687)
|+||.+ |++.|++++|.++|.+|.+.|+.||.+||+ .++.+++ +.++.++..|...|+.||..+||+
T Consensus 257 n~li~~------~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~ 328 (857)
T PLN03077 257 NAMISG------YFENGECLEGLELFFTMRELSVDPDLMTIT--SVISACELLGDERLGREMHGYVVKTGFAVDVSVCNS 328 (857)
T ss_pred HHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCChhHHH--HHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHH
Confidence 999999 999999999999999999999999999999 9999998 456679999999999999999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 357 IRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
||++|++.|++++|.++|++|. .||.++||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|
T Consensus 329 -Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g 403 (857)
T PLN03077 329 -LIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403 (857)
T ss_pred -HHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc
Confidence 9999999999999999999997 48999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcCHHHHHhhccc-
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKK- 514 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~- 514 (687)
++++|.++++.|.+.|+.|+..+||+||++|++.|++++|.++|++|.+. ...+|+. |.+++..+...+|....
T Consensus 404 ~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred hHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC----CeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999764 2337887 88888877665544110
Q ss_pred -------c-------------hhhHHHHHhhhcCCcccccccCCCCccEEEeeeecCCCccccccccccc--ccCCHHHH
Q 005628 515 -------W-------------NESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAI--IDLDPIET 572 (687)
Q Consensus 515 -------~-------------~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~~~L~~--~~l~~~e~ 572 (687)
. ..+.++++.+ ++..|...|+.|+..++ +.+++++|+++....+. ++-...+.
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~----i~~~~~~~g~~~~~~~~-naLi~~y~k~G~~~~A~~~f~~~~~d~ 554 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKE----IHAHVLRTGIGFDGFLP-NALLDLYVRCGRMNYAWNQFNSHEKDV 554 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHH----HHHHHHHhCCCccceec-hHHHHHHHHcCCHHHHHHHHHhcCCCh
Confidence 0 1123333333 55666777777777777 77778888877543211 11112334
Q ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHhhcCCccEEEeccc
Q 005628 573 EKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDAAN 613 (687)
Q Consensus 573 ~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~~yd~vIDGan 613 (687)
..|...|..++..+...++++.|++|.+.+..+|.+.-..-
T Consensus 555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 56777778888888889999999999988766666554443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-47 Score=454.69 Aligned_cols=397 Identities=12% Similarity=0.021 Sum_probs=282.5
Q ss_pred HhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 005628 149 KTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH 228 (687)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~t 228 (687)
.+||..+. .+.+.++.++|+++|++|...| +.||.+||+++|.+|++.|+++.|.+++..|.+.|+.||..+
T Consensus 254 ~s~n~li~--~~~~~g~~~eAl~lf~~M~~~g------~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~ 325 (857)
T PLN03077 254 ISWNAMIS--GYFENGECLEGLELFFTMRELS------VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325 (857)
T ss_pred chhHHHHH--HHHhCCCHHHHHHHHHHHHHcC------CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHH
Confidence 34444444 4444444444444444443332 233335555555555555555555555555555555555555
Q ss_pred HHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHH
Q 005628 229 YNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 229 yn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
||+||.+|+ ++|++++|.++|+ +|.. +|.++||+||.+ |++.|++++|.++|+
T Consensus 326 ~n~Li~~y~----------k~g~~~~A~~vf~-------~m~~----~d~~s~n~li~~------~~~~g~~~~A~~lf~ 378 (857)
T PLN03077 326 CNSLIQMYL----------SLGSWGEAEKVFS-------RMET----KDAVSWTAMISG------YEKNGLPDKALETYA 378 (857)
T ss_pred HHHHHHHHH----------hcCCHHHHHHHHh-------hCCC----CCeeeHHHHHHH------HHhCCCHHHHHHHHH
Confidence 555555555 8899999999995 5543 288899999999 999999999999999
Q ss_pred HHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
+|.+.|+.||.+||+ .++.+++ +.+..++..|.+.|+.||..+||+ ||++|++.|++++|.++|++|.+
T Consensus 379 ~M~~~g~~Pd~~t~~--~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~-Li~~y~k~g~~~~A~~vf~~m~~--- 452 (857)
T PLN03077 379 LMEQDNVSPDEITIA--SVLSACACLGDLDVGVKLHELAERKGLISYVVVANA-LIEMYSKCKCIDKALEVFHNIPE--- 452 (857)
T ss_pred HHHHhCCCCCceeHH--HHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH-HHHHHHHcCCHHHHHHHHHhCCC---
Confidence 999999999999999 9999887 456678999999999999999999 99999999999999999999974
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
+|+++||+||.+|++.|+.++|+++|++|.. +++||.+||+++|.+|++.|+++.+.+++..|.+.|+.+|..++|+|
T Consensus 453 -~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naL 530 (857)
T PLN03077 453 -KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530 (857)
T ss_pred -CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHH
Confidence 6888999999999999999999999999975 58899999999998888888888888888888888888888888888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcCHHHHHhhcccchhhHHHHHhhhcCCcccccccCCCCcc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKW 542 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~ 542 (687)
|++|+++|++++|.++|++| . .+..+|++ |.++++.|.. ++|++ +|++|...|+.||
T Consensus 531 i~~y~k~G~~~~A~~~f~~~--~---~d~~s~n~lI~~~~~~G~~-------------~~A~~----lf~~M~~~g~~Pd 588 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH--E---KDVVSWNILLTGYVAHGKG-------------SMAVE----LFNRMVESGVNPD 588 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc--C---CChhhHHHHHHHHHHcCCH-------------HHHHH----HHHHHHHcCCCCC
Confidence 88888888888888888776 1 22337777 6777666653 45555 8888888888888
Q ss_pred EEEeeeecCCCcccccccc--------c---ccccCCHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHhhcCCccEEEec
Q 005628 543 IVSHTTVGGDALCKCCGEK--------L---AIIDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAVVDA 611 (687)
Q Consensus 543 ~vt~t~vl~~g~C~~~~~~--------L---~~~~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~~yd~vIDG 611 (687)
.+|| +.++.+.|..+... + ..+.++.+.|..+++.+.+.+...+ +.+.|++|- ..+|.++++
T Consensus 589 ~~T~-~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~e---A~~~~~~m~---~~pd~~~~~ 661 (857)
T PLN03077 589 EVTF-ISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE---AYNFINKMP---ITPDPAVWG 661 (857)
T ss_pred cccH-HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHH---HHHHHHHCC---CCCCHHHHH
Confidence 8888 55555555544321 1 1233344556666665554444333 334444431 245666666
Q ss_pred cchhcc
Q 005628 612 ANVGLY 617 (687)
Q Consensus 612 anvg~~ 617 (687)
+-++.|
T Consensus 662 aLl~ac 667 (857)
T PLN03077 662 ALLNAC 667 (857)
T ss_pred HHHHHH
Confidence 655544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-47 Score=441.62 Aligned_cols=419 Identities=13% Similarity=0.062 Sum_probs=346.7
Q ss_pred cchHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 005628 146 KSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG 225 (687)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd 225 (687)
....+|+..+. .+.+.++.+.|.+++..|...| +.||..+||.||++|++.|++++|.++|++|. .||
T Consensus 121 ~~~~t~~~ll~--a~~~~~~~~~a~~l~~~m~~~g------~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~ 188 (697)
T PLN03081 121 LPASTYDALVE--ACIALKSIRCVKAVYWHVESSG------FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERN 188 (697)
T ss_pred CCHHHHHHHHH--HHHhCCCHHHHHHHHHHHHHhC------CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCC
Confidence 45677888887 7778899999999999996654 56666999999999999999999999999996 489
Q ss_pred HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHH
Q 005628 226 QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (687)
Q Consensus 226 ~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~ 304 (687)
.++||+||.+|+ +.|++++|.++|. +|... |+. |..||+++|.+ +++.|.++.+.
T Consensus 189 ~~t~n~li~~~~----------~~g~~~~A~~lf~-------~M~~~-g~~p~~~t~~~ll~a------~~~~~~~~~~~ 244 (697)
T PLN03081 189 LASWGTIIGGLV----------DAGNYREAFALFR-------EMWED-GSDAEPRTFVVMLRA------SAGLGSARAGQ 244 (697)
T ss_pred eeeHHHHHHHHH----------HCcCHHHHHHHHH-------HHHHh-CCCCChhhHHHHHHH------HhcCCcHHHHH
Confidence 999999999999 8999999999994 88876 777 89999999999 99999999999
Q ss_pred HHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHH
Q 005628 305 STFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379 (687)
Q Consensus 305 ~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~ 379 (687)
+++..|.+.|+.||.++|+ .|+++|+ ++|..+|++|.. +|+++||+ ||.+|++.|+.++|.++|++|.
T Consensus 245 ~l~~~~~~~g~~~d~~~~n--~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~-li~~y~~~g~~~eA~~lf~~M~ 317 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSC--ALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNS-MLAGYALHGYSEEALCLYYEMR 317 (697)
T ss_pred HHHHHHHHhCCCccceeHH--HHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHH-HHHHHHhCCCHHHHHHHHHHHH
Confidence 9999999999999999999 9999998 456779999864 69999999 9999999999999999999999
Q ss_pred hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 380 LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 380 ~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
+.|+.||.+||+++|.+|++.|++++|.+++.+|.+.|+.||..+||+||++||+.|++++|.++|++|. .||.++
T Consensus 318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t 393 (697)
T PLN03081 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLIS 393 (697)
T ss_pred HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999995 489999
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHH-HHHHHcCHHHHHhhcccchhhHHHHHhhhcCCccccccc
Q 005628 460 LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV-IAKWFNSKEAARLGKKKWNESLIKDTMENKGGGWHGLGW 536 (687)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~-I~~~~~~~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~ 536 (687)
||+||.+|++.|+.++|.++|++|... |+.|+ ||+. |.++++.|. +++|.+ +|+.|..
T Consensus 394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd~~T~~~ll~a~~~~g~-------------~~~a~~----~f~~m~~ 454 (697)
T PLN03081 394 WNALIAGYGNHGRGTKAVEMFERMIAE--GVAPNHVTFLAVLSACRYSGL-------------SEQGWE----IFQSMSE 454 (697)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHhcCCc-------------HHHHHH----HHHHHHH
Confidence 999999999999999999999999999 77777 8888 666666664 556666 8999975
Q ss_pred -CCCCccEEEeeeecCCCcccccccccc-----c--ccCCHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHhhcCCccEE
Q 005628 537 -LGKGKWIVSHTTVGGDALCKCCGEKLA-----I--IDLDPIETEKFAESVASIAIKRERNSSFQKFQKWLDYYGPFEAV 608 (687)
Q Consensus 537 -~g~~p~~vt~t~vl~~g~C~~~~~~L~-----~--~~l~~~e~~~l~~~i~~~~~~~~~~~~~~~F~~~l~~~~~yd~v 608 (687)
.|+.|+..+| +.+++++|+.|....+ . +..+...+.. .+......+........+++.++ ..|-++.
T Consensus 455 ~~g~~p~~~~y-~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~---Ll~a~~~~g~~~~a~~~~~~l~~-~~p~~~~ 529 (697)
T PLN03081 455 NHRIKPRAMHY-ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAA---LLTACRIHKNLELGRLAAEKLYG-MGPEKLN 529 (697)
T ss_pred hcCCCCCccch-HhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHH---HHHHHHHcCCcHHHHHHHHHHhC-CCCCCCc
Confidence 6999999999 8999999999864321 1 2222333333 33344444544444444555442 2333322
Q ss_pred EeccchhcccCCCCChhHHHHHHHHHHh
Q 005628 609 VDAANVGLYSQRNFKPARVNAVVNGIRQ 636 (687)
Q Consensus 609 IDGanvg~~~~~~~~~~~l~~vv~~l~~ 636 (687)
..-+.+..|...| .+.....+.+.+.+
T Consensus 530 ~y~~L~~~y~~~G-~~~~A~~v~~~m~~ 556 (697)
T PLN03081 530 NYVVLLNLYNSSG-RQAEAAKVVETLKR 556 (697)
T ss_pred chHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 2222233454443 24444455555544
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.1e-15 Score=164.82 Aligned_cols=276 Identities=15% Similarity=0.042 Sum_probs=210.9
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHh
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG---QYHYNVLLYLCSS 238 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd---~~tyn~Ll~~~~~ 238 (687)
..++.++|...|..+.+.. +.+..+|..+...+.+.|++++|+.+++.+...+-.++ ...+..|...|.
T Consensus 47 ~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~- 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVD-------PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL- 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcC-------cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH-
Confidence 4578889999999996532 12346899999999999999999999999987643332 356788888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
+.|+.++|..+|. ++... .-.+..+++.++.. +.+.|++++|..+|+.|.+.+-.++
T Consensus 119 ---------~~g~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 119 ---------KAGLLDRAEELFL-------QLVDE-GDFAEGALQQLLEI------YQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred ---------HCCCHHHHHHHHH-------HHHcC-CcchHHHHHHHHHH------HHHhchHHHHHHHHHHHHHhcCCcc
Confidence 8899999999995 55442 22256679999999 9999999999999999987653222
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
.... ...|.. +...+.+.|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 176 ~~~~----------------------------~~~~~~-la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~ 225 (389)
T PRK11788 176 RVEI----------------------------AHFYCE-LAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLAL 225 (389)
T ss_pred hHHH----------------------------HHHHHH-HHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHH
Confidence 1100 011223 6667888999999999999988753 234567888889999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (687)
+.|++++|.++|+++...+-.....+++.++.+|++.|+.++|...++.+.+. .|+...+..+...+.+.|++++|..
T Consensus 226 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~ 303 (389)
T PRK11788 226 AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQA 303 (389)
T ss_pred HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999887532222466888999999999999999999998875 4777777889999999999999999
Q ss_pred HHHHHHhccCCCChhHHHH-HHHHH
Q 005628 479 LLHKLRTSVRKVSPSTADV-IAKWF 502 (687)
Q Consensus 479 ll~~M~~~~~g~~p~t~~~-I~~~~ 502 (687)
+|+++... .+...++.. +..++
T Consensus 304 ~l~~~l~~--~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 304 LLREQLRR--HPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHh--CcCHHHHHHHHHHhh
Confidence 99988877 444445554 44443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=9e-14 Score=151.89 Aligned_cols=269 Identities=12% Similarity=0.063 Sum_probs=213.6
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|..+++.+...+ +.........|..+...|.+.|++++|+.+|+++.+. -+++..+++.+...|.
T Consensus 78 ~~~~~g~~~~A~~~~~~~l~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~- 152 (389)
T PRK11788 78 LFRRRGEVDRAIRIHQNLLSRP---DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQ- 152 (389)
T ss_pred HHHHcCcHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH-
Confidence 4457889999999999986532 1101112357889999999999999999999999865 3456789999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCC-c----cchhccccccccccccccCCChhhHHHHHHHHHhc
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-N----GQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d-~----~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (687)
+.|++++|.+.+. .+... +-.+ . ..|..+... +.+.|++++|..+|+++.+.
T Consensus 153 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~al~~ 209 (389)
T PRK11788 153 ---------QEKDWQKAIDVAE-------RLEKL-GGDSLRVEIAHFYCELAQQ------ALARGDLDAARALLKKALAA 209 (389)
T ss_pred ---------HhchHHHHHHHHH-------HHHHh-cCCcchHHHHHHHHHHHHH------HHhCCCHHHHHHHHHHHHhH
Confidence 8899999999995 44432 2111 1 124556666 78899999999999998875
Q ss_pred CCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 005628 314 GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAV 393 (687)
Q Consensus 314 g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~L 393 (687)
. |+.. ..+.. +...|.+.|++++|.++|+++...+......+++.+
T Consensus 210 ~--p~~~-------------------------------~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 210 D--PQCV-------------------------------RASIL-LGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred C--cCCH-------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 2 3321 12223 778899999999999999999976433335678999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---c
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---A 470 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~ 470 (687)
+.+|++.|++++|...++.+.+. .|+...+..+...+.+.|+.++|..+++++.+. .|+..+++.++..++. .
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~ 331 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE 331 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence 99999999999999999999876 478888899999999999999999999998875 6999999999999886 5
Q ss_pred CChHHHHHHHHHHHhccCCCChh
Q 005628 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|+.+++..+|++|.++...+.|+
T Consensus 332 g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 332 GRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred ccchhHHHHHHHHHHHHHhCCCC
Confidence 68999999999999984455555
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-11 Score=148.59 Aligned_cols=310 Identities=11% Similarity=0.010 Sum_probs=202.9
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
....++.++|.+.|+.+..... + ....+..++..+.+.|++++|+++++.+... .+++..+|+.+...|.
T Consensus 407 ~~~~~~~~~A~~~~~~a~~~~~--~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~-- 476 (899)
T TIGR02917 407 KLSQGDPSEAIADLETAAQLDP--E-----LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYL-- 476 (899)
T ss_pred HHhCCChHHHHHHHHHHHhhCC--c-----chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHH--
Confidence 3466778888888888754321 1 1245566777888888888888888888753 4456777888888877
Q ss_pred ccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc
Q 005628 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (687)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (687)
..|+.++|...|. ++... .-.+...+..+... +...|++++|..+|+++..... .+.
T Consensus 477 --------~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~~~~~~~-~~~ 533 (899)
T TIGR02917 477 --------GKGDLAKAREAFE-------KALSI-EPDFFPAAANLARI------DIQEGNPDDAIQRFEKVLTIDP-KNL 533 (899)
T ss_pred --------hCCCHHHHHHHHH-------HHHhh-CCCcHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHhCc-CcH
Confidence 7788888888884 33321 11134445666666 7778888888888888776531 123
Q ss_pred cccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 320 HMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 320 ~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
.++. .+...+. ..|..++..+.... +.+...+.. +...|.+.|++++|.++++++.... +.+..+|..+.
T Consensus 534 ~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 608 (899)
T TIGR02917 534 RAIL--ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALA-LAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLG 608 (899)
T ss_pred HHHH--HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHH-HHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 3333 3333332 33444555544332 223344444 7778888888888888888887643 45677788888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
..|.+.|++++|...|+.+.+.. +.+...|..+...+.+.|+.++|..+|+.+.+.. +.+..+|..+...+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888877653 2345667777888888888888888888877642 334677888888888888888
Q ss_pred HHHHHHHHHHhccCCCChh-HHHH-HHHHHcCHHHHHhh
Q 005628 475 RVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 475 ~A~~ll~~M~~~~~g~~p~-t~~~-I~~~~~~~~~~~a~ 511 (687)
+|..+++.+... .+... .+.. ...++..+...+|.
T Consensus 687 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~ 723 (899)
T TIGR02917 687 SAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAI 723 (899)
T ss_pred HHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHH
Confidence 888888888776 33222 3333 44455555544333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.5e-11 Score=145.75 Aligned_cols=282 Identities=12% Similarity=-0.019 Sum_probs=143.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..|..+...|.+.|++++|+..|+.+.+.. +.+...+..+...+. ..|+.++|...|. ++..
T Consensus 602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~~~~ 663 (899)
T TIGR02917 602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYA----------VMKNYAKAITSLK-------RALE 663 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 344444444444444444444444444321 122333444444444 4455555555552 2221
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcccC
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRKKD 346 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~~g 346 (687)
. .-.+..+|..+... +...|++++|..+++.|.+... ++...+. .+...+. ..|...+..+...+
T Consensus 664 ~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 664 L-KPDNTEAQIGLAQL------LLAAKRTESAKKIAKSLQKQHP-KAALGFE--LEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred c-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhCc-CChHHHH--HHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 1 11133445555555 5555555555555555555431 1222222 2222221 23333444444332
Q ss_pred CCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
|+..++.. +...+.+.|+.++|.+.++++.... +.+...++.+...|.+.|++++|..+|+++.+.. +++...|+
T Consensus 734 --~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~ 808 (899)
T TIGR02917 734 --PSSQNAIK-LHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLN 808 (899)
T ss_pred --CCchHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 33334444 5566666666666666666666542 3455666666666666666666666666666543 34555666
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-ChhHHH-HHHHHHcC
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTAD-VIAKWFNS 504 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~~-~I~~~~~~ 504 (687)
.+...+.+.|+ .+|..+++.+.+.. .-+..++..+...+...|++++|..+|+++.+. ++ .+.++. ....+++.
T Consensus 809 ~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~ 884 (899)
T TIGR02917 809 NLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNI--APEAAAIRYHLALALLAT 884 (899)
T ss_pred HHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHc
Confidence 66666666666 66666666665542 223445556666677777777777777777766 33 333433 35556655
Q ss_pred HHHHHh
Q 005628 505 KEAARL 510 (687)
Q Consensus 505 ~~~~~a 510 (687)
|...+|
T Consensus 885 g~~~~A 890 (899)
T TIGR02917 885 GRKAEA 890 (899)
T ss_pred CCHHHH
Confidence 554333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=101.22 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=48.2
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~ 237 (687)
||+++||++|++|++.|++++|+++|++|++.|++||.+||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 7889999999999999999999999999999999999999999999998
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-13 Score=101.46 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
||+++||+||++|++.|++++|+++|++|++.|+.||..||++||++||
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-10 Score=118.09 Aligned_cols=281 Identities=14% Similarity=0.062 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC---------c----------ccCCCCch
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV---------V----------KPAKSGSG 252 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~---------~----------~~~k~g~~ 252 (687)
.+=|.|+.. ...|.+.++.-+|+.|...|+..+...--.|+..-|-.+... + .-=|.|.+
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 355666654 457899999999999999999988888888887766322110 0 01134443
Q ss_pred hhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcc
Q 005628 253 MRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR 331 (687)
Q Consensus 253 ~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~ 331 (687)
.+ -+|. -.+ ..-||.+||.| +|+--.++.|.++++|-.....+-+..+|| .+|.+-
T Consensus 196 Ad--L~~E-------------~~PKT~et~s~mI~G------l~K~~~~ERA~~L~kE~~~~k~kv~~~aFN--~lI~~~ 252 (625)
T KOG4422|consen 196 AD--LLFE-------------TLPKTDETVSIMIAG------LCKFSSLERARELYKEHRAAKGKVYREAFN--GLIGAS 252 (625)
T ss_pred HH--HHHh-------------hcCCCchhHHHHHHH------HHHHHhHHHHHHHHHHHHHhhheeeHHhhh--hhhhHH
Confidence 33 3332 222 56789999999 999999999999999999988899999999 888776
Q ss_pred c-cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHH----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH-
Q 005628 332 S-NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM- 405 (687)
Q Consensus 332 ~-~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~- 405 (687)
. ...+.+..+|....+.||..|+|+ ++.+..+.|+++. |.+++.+|++-|+.|...+|.-+|.-+++.++..+
T Consensus 253 S~~~~K~Lv~EMisqkm~Pnl~TfNa-lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~ 331 (625)
T KOG4422|consen 253 SYSVGKKLVAEMISQKMTPNLFTFNA-LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKV 331 (625)
T ss_pred HhhccHHHHHHHHHhhcCCchHhHHH-HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhh
Confidence 6 456789999999999999999999 9999999997765 56889999999999999999999999999988754
Q ss_pred HHHHHHHHHH----cCCCC----CcchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH---HHHHHHHHHHHhc
Q 005628 406 AFDMVKRMKS----LGINP----RLRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE---PELEALLRVSVEA 470 (687)
Q Consensus 406 A~~l~~~M~~----~g~~P----d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~---~ty~~Li~~~~~~ 470 (687)
|..++.++.. ..++| |..-|...++.|.+..+.+.|.++..-.... -+.|+. .-|.-+....|..
T Consensus 332 as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~ 411 (625)
T KOG4422|consen 332 ASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQM 411 (625)
T ss_pred hHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHH
Confidence 4444444442 23444 4456778889999999999999998766543 133432 3466788888999
Q ss_pred CChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 471 GKGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
...+.-+..++.|.-+..++.+-+...
T Consensus 412 es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 412 ESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHHHhccceecCCchhHHH
Confidence 999999999999998855555554443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.3e-09 Score=111.22 Aligned_cols=268 Identities=11% Similarity=0.034 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
.||.+||.++||--..+.|.++|.+-.....+.+..+||.||.+-+ +....++.. ||..
T Consensus 208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S--------------~~~~K~Lv~-------EMis 266 (625)
T KOG4422|consen 208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS--------------YSVGKKLVA-------EMIS 266 (625)
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH--------------hhccHHHHH-------HHHH
Confidence 7999999999999999999999999999888999999999998876 233356663 7776
Q ss_pred cCCCC-CccchhccccccccccccccCCChhhH----HHHHHHHHhcCCCCCccccchhhHhhccccccCC---------
Q 005628 272 SRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL----DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERG--------- 337 (687)
Q Consensus 272 ~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A----~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~--------- 337 (687)
. .+. |..|+|+++.+ ..+.|+++.| .+++.||++.|+.|...+|. .+|.-+|.+...
T Consensus 267 q-km~Pnl~TfNalL~c------~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh--~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 267 Q-KMTPNLFTFNALLSC------AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYH--LIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred h-hcCCchHhHHHHHHH------HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHH--HHHHHhcccCCchhhhHHHHH
Confidence 6 565 89999999999 9999988654 67889999999999999998 777777733221
Q ss_pred -CcchhcccCCCCChhhhHHH---HHHHHHhhccHHHHHHHHHHHHhC----CCCCCH---HHHHHHHHHHHHcCChHHH
Q 005628 338 -PDDQSRKKDWSIDNQDADEI---RLSEDAKKYAFQRGFEIYEKMCLD----EVPMNE---ASLTAVGRMAMSMGDGDMA 406 (687)
Q Consensus 338 -~~~~m~~~g~~pd~~tyn~~---lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd~---~tyn~LI~~~~~~g~~~~A 406 (687)
+.+++..+.++|-..+.|-. -|+-|.+..+.+-|.++..-++.. -+.|+. +=|.-+....|.....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444454433322221 233333444444444444333321 011221 1233444444444444444
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC----------------------------------
Q 005628 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---------------------------------- 452 (687)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g---------------------------------- 452 (687)
...++.|.-.-+-|+..+-..++.+.--.|.++-.-++|.+|...|
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 4444444444334444444444444444444444433333333222
Q ss_pred --------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005628 453 --------------------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (687)
Q Consensus 453 --------------------v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (687)
..-.....+.+.-.+.+.|..++|.++|.-+..++..
T Consensus 498 ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ 554 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNK 554 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCc
Confidence 1112233455666678999999999999988655433
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.7e-09 Score=120.91 Aligned_cols=256 Identities=13% Similarity=0.072 Sum_probs=164.5
Q ss_pred hhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC
Q 005628 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG 250 (687)
Q Consensus 171 ~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g 250 (687)
.++-.|...|+.|++ +||.++|.-||..|+.+.|- +|..|+-..+..+...|+.++.+.. ..+
T Consensus 11 nfla~~e~~gi~PnR------vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~----------~An 73 (1088)
T KOG4318|consen 11 NFLALHEISGILPNR------VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHK----------EAN 73 (1088)
T ss_pred hHHHHHHHhcCCCch------hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccc----------ccc
Confidence 455677777777777 99999999999999999999 9999998888889999999999888 455
Q ss_pred chhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhc--CCCCCccccchh---
Q 005628 251 SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL--GQFSNGHMKLNS--- 325 (687)
Q Consensus 251 ~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~--g~~Pd~~ty~~~--- 325 (687)
+.+.+.+.. .-||+.|+.+ |...|++..-..+=+.|... ...|+.+--...
T Consensus 74 d~Enpkep~------------------aDtyt~Ll~a------yr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl 129 (1088)
T KOG4318|consen 74 DAENPKEPL------------------ADTYTNLLKA------YRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFL 129 (1088)
T ss_pred cccCCCCCc------------------hhHHHHHHHH------HHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHH
Confidence 554443222 3579999999 99999876522222223221 011111000000
Q ss_pred hHhhccc---ccc---------CCCcchhcccCCCCChhhhHHHHHHHHHhhc--cHHHHHHHHHHHHhCCC-CCCHHHH
Q 005628 326 QLLDGRS---NLE---------RGPDDQSRKKDWSIDNQDADEIRLSEDAKKY--AFQRGFEIYEKMCLDEV-PMNEASL 390 (687)
Q Consensus 326 ~li~g~~---~~a---------~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g--~~~~A~~lf~~M~~~gi-~pd~~ty 390 (687)
..++++- ..+ +.+++...+.+..-.+..|+....- +.+.. ......++.+ |.+.+. .|+..+|
T Consensus 130 ~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~~p~~v-fLrqnv~~ntpvekLl~-~cksl~e~~~s~~l 207 (1088)
T KOG4318|consen 130 MKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV-FLRQNVVDNTPVEKLLN-MCKSLVEAPTSETL 207 (1088)
T ss_pred hhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCcccccchHHH-HHHHhccCCchHHHHHH-HHHHhhcCCChHHH
Confidence 1111111 000 0111222221111011111110000 01110 1111222222 222222 5999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
.+++++-..+|+++.|..++.+|++.|+..+..-|-+||-+ .++..-+..+...|.+.||.|+..||.-.+..+.++
T Consensus 208 ~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N 284 (1088)
T KOG4318|consen 208 HAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSN 284 (1088)
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcc
Confidence 99999999999999999999999999999999989999877 888899999999999999999999998887777765
Q ss_pred CC
Q 005628 471 GK 472 (687)
Q Consensus 471 g~ 472 (687)
|.
T Consensus 285 ~~ 286 (1088)
T KOG4318|consen 285 GQ 286 (1088)
T ss_pred hh
Confidence 54
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.2e-07 Score=106.98 Aligned_cols=290 Identities=10% Similarity=-0.092 Sum_probs=184.6
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~ 237 (687)
.....++..+|..+++.....-... | ..+..+..++...|++++|+..|+++... .|+ ...+..+-..+.
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~p~~-----~--~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTAKNG-----R--DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLL 121 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhCCCc-----h--hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHH
Confidence 3347788889999988885432211 2 23444445666788999999999888764 343 445555666666
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..|+.++|...+. +.... .-.+...|..+... +...|++++|...++.+....-.+
T Consensus 122 ----------~~g~~~~Ai~~l~-------~Al~l-~P~~~~a~~~la~~------l~~~g~~~eA~~~~~~~~~~~P~~ 177 (656)
T PRK15174 122 ----------KSKQYATVADLAE-------QAWLA-FSGNSQIFALHLRT------LVLMDKELQAISLARTQAQEVPPR 177 (656)
T ss_pred ----------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHCCChHHHHHHHHHHHHhCCCC
Confidence 6788888888884 33221 11144457777777 888888888888888776543222
Q ss_pred Cccccch-hhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005628 318 NGHMKLN-SQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (687)
Q Consensus 318 d~~ty~~-~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~ 396 (687)
....+.. ..+..+--.+|...+..+....-.++...+.. +...+.+.|+.++|...|++..... +-+...+..+-..
T Consensus 178 ~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~-l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~ 255 (656)
T PRK15174 178 GDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGL-AVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLA 255 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHH-HHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 1111110 00111111334444444433321222223322 5567778888888888888887654 3356677778888
Q ss_pred HHHcCChHH----HHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005628 397 AMSMGDGDM----AFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (687)
Q Consensus 397 ~~~~g~~~~----A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (687)
|...|++++ |...|+..... .| +...+..+-..+.+.|+.++|...+++..+.. .-+...+..+-..|.+.|
T Consensus 256 l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G 332 (656)
T PRK15174 256 YYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVG 332 (656)
T ss_pred HHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 888888875 67788777654 34 34577777888888888888888888877643 223455666777888888
Q ss_pred ChHHHHHHHHHHHhc
Q 005628 472 KGDRVYYLLHKLRTS 486 (687)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (687)
++++|...|+++...
T Consensus 333 ~~~eA~~~l~~al~~ 347 (656)
T PRK15174 333 QYTAASDEFVQLARE 347 (656)
T ss_pred CHHHHHHHHHHHHHh
Confidence 888888888888766
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.3e-06 Score=102.06 Aligned_cols=281 Identities=7% Similarity=-0.050 Sum_probs=177.6
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~~~~~~ 240 (687)
..++.++|.+.|+.+.... |+ +...|..+-..+.+.|++++|+..|+++... .| +...+..+...+.
T Consensus 88 ~~g~~~~A~~~l~~~l~~~--P~-----~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~--- 155 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVN--VC-----QPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLV--- 155 (656)
T ss_pred hcCCHHHHHHHHHHHHHhC--CC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH---
Confidence 3566777777777764321 11 1245555666667777777777777777643 23 3445556666666
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.++|...+. .+... .-.+...|..+ .. +...|++++|..+++.+....-.++..
T Consensus 156 -------~~g~~~eA~~~~~-------~~~~~-~P~~~~a~~~~-~~------l~~~g~~~eA~~~~~~~l~~~~~~~~~ 213 (656)
T PRK15174 156 -------LMDKELQAISLAR-------TQAQE-VPPRGDMIATC-LS------FLNKSRLPEDHDLARALLPFFALERQE 213 (656)
T ss_pred -------HCCChHHHHHHHH-------HHHHh-CCCCHHHHHHH-HH------HHHcCCHHHHHHHHHHHHhcCCCcchh
Confidence 5667777766663 22211 11111122111 22 455677777777777665543222222
Q ss_pred ccchhhHhhccc-----cccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHH----HHHHHHHHHhCCCCCCHHHH
Q 005628 321 MKLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQR----GFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 321 ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~----A~~lf~~M~~~gi~pd~~ty 390 (687)
.+. .+...+. .+|...+...... .|+ ...+.. +-..|...|++++ |...|++..... +.+...+
T Consensus 214 ~~~--~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~-Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~ 287 (656)
T PRK15174 214 SAG--LAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRS-LGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIV 287 (656)
T ss_pred HHH--HHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHH
Confidence 221 1111111 3333344444432 233 334444 7788889999886 899999988753 3356789
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHH
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE-LEALLRVSV 468 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t-y~~Li~~~~ 468 (687)
..+...+.+.|++++|...+++.... .|+ ...+..+-..|.+.|++++|...|+.+.+. .|+... +..+..++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~ 363 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALL 363 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHH
Confidence 99999999999999999999998865 354 345677788899999999999999998875 355433 334566789
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.++|...|++....
T Consensus 364 ~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 364 QAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HCCCHHHHHHHHHHHHHh
Confidence 999999999999998876
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.5e-09 Score=71.96 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=15.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 005628 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRM 413 (687)
Q Consensus 382 gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M 413 (687)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44444444444444444444444444444444
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.78 E-value=5.7e-09 Score=71.45 Aligned_cols=32 Identities=28% Similarity=0.645 Sum_probs=18.9
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
|+.||.+|||+||++||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55556666666666666666666666555555
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.2e-07 Score=103.17 Aligned_cols=243 Identities=13% Similarity=0.053 Sum_probs=161.0
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-Cccchhcccccccc
Q 005628 212 RLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMID 290 (687)
Q Consensus 212 ~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~ 290 (687)
.++-.|...|+.||.+||.+||.-|| ..|+++.|- +|. -|..+ ..+ +...|+.++.+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc----------~~gdieaat-if~-------fm~~k-sLpv~e~vf~~lv~s--- 68 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYC----------TKGDIEAAT-IFP-------FMEIK-SLPVREGVFRGLVAS--- 68 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHc----------ccCCCcccc-chh-------hhhcc-cccccchhHHHHHhc---
Confidence 35567888999999999999999999 788888888 884 23333 455 67779999999
Q ss_pred ccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCC-cch-------------------------hc-
Q 005628 291 KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP-DDQ-------------------------SR- 343 (687)
Q Consensus 291 ~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~-~~~-------------------------m~- 343 (687)
....++.+.+. .|-.-||+ .|..+|...+.-. |+. |.
T Consensus 69 ---h~~And~Enpk-----------ep~aDtyt--~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~ 132 (1088)
T KOG4318|consen 69 ---HKEANDAENPK-----------EPLADTYT--NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKI 132 (1088)
T ss_pred ---ccccccccCCC-----------CCchhHHH--HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhc
Confidence 99999888876 57777777 6666665221110 100 00
Q ss_pred --ccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005628 344 --KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (687)
Q Consensus 344 --~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (687)
..+.-||..+ .|--..-.|.++.+.+++..|.... ..|-.+ .|+-+... ..-..++....+...-.|
T Consensus 133 ~c~p~~lpda~n----~illlv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~ 202 (1088)
T KOG4318|consen 133 HCCPHSLPDAEN----AILLLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAP 202 (1088)
T ss_pred ccCcccchhHHH----HHHHHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCC
Confidence 0111222211 2222333444444444444432210 111111 12222221 222334444444331159
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHH-
Q 005628 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADV- 497 (687)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~- 497 (687)
+..+|.+++++..-+|+++.|..++.+|.++|+..+..-|-.||-+ .+...-+..+++-|.+. |+.|+ |+..
T Consensus 203 ~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~--gv~p~seT~ady 277 (1088)
T KOG4318|consen 203 TSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEK--GVQPGSETQADY 277 (1088)
T ss_pred ChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHh--cCCCCcchhHHH
Confidence 9999999999999999999999999999999999999988888876 88888999999999999 77777 8876
Q ss_pred HHHHHcCHHH
Q 005628 498 IAKWFNSKEA 507 (687)
Q Consensus 498 I~~~~~~~~~ 507 (687)
++..+..+..
T Consensus 278 vip~l~N~~t 287 (1088)
T KOG4318|consen 278 VIPQLSNGQT 287 (1088)
T ss_pred HHhhhcchhh
Confidence 7777775553
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.8e-06 Score=97.75 Aligned_cols=254 Identities=11% Similarity=0.044 Sum_probs=186.5
Q ss_pred cCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccc
Q 005628 164 TNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAV 241 (687)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~~~~~ 241 (687)
++.++|.+.|+...+.+ ...| +...|+.+-..+...|++++|+..|++.... .|+ ...|..+-..+.
T Consensus 308 ~~y~~A~~~~~~al~~~-----~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~---- 376 (615)
T TIGR00990 308 ESYEEAARAFEKALDLG-----KLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNL---- 376 (615)
T ss_pred hhHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHH----
Confidence 45678888888886543 1223 3467788888888999999999999998864 455 456777777777
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
..|+.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+. .|+..
T Consensus 377 ------~~g~~~eA~~~~~-------~al~~-~p~~~~~~~~lg~~------~~~~g~~~~A~~~~~kal~l--~P~~~- 433 (615)
T TIGR00990 377 ------ELGDPDKAEEDFD-------KALKL-NSEDPDIYYHRAQL------HFIKGEFAQAGKDYQKSIDL--DPDFI- 433 (615)
T ss_pred ------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHc--CccCH-
Confidence 7889999999995 33322 21244557777667 88899999999999887664 23321
Q ss_pred cchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005628 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (687)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g 401 (687)
..|.. +-..+.+.|++++|...|++..... +-+...|+.+-..+...|
T Consensus 434 ------------------------------~~~~~-la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 434 ------------------------------FSHIQ-LGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQN 481 (615)
T ss_pred ------------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcc
Confidence 12223 6677889999999999999988642 345788999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCc--c------hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005628 402 DGDMAFDMVKRMKSLGINPRL--R------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~--~------ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (687)
++++|.+.|+...... |+. . .++..+..+-..|++++|.+++++..... .-+...+..|...+.+.|++
T Consensus 482 ~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~ 558 (615)
T TIGR00990 482 KFDEAIEKFDTAIELE--KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDV 558 (615)
T ss_pred CHHHHHHHHHHHHhcC--CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCH
Confidence 9999999999876542 321 1 12222233444699999999999987754 23445788999999999999
Q ss_pred HHHHHHHHHHHhc
Q 005628 474 DRVYYLLHKLRTS 486 (687)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (687)
++|..+|++..+.
T Consensus 559 ~eAi~~~e~A~~l 571 (615)
T TIGR00990 559 DEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998765
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.4e-07 Score=96.67 Aligned_cols=255 Identities=16% Similarity=0.098 Sum_probs=104.4
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRV-ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~-lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
+.++.++|+++++.-.... .+|+-..|-. +-..+-..++.+.|++.|+++...+-. +...|..++.. .
T Consensus 20 ~~~~~~~Al~~L~~~~~~~------~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~--- 88 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKI------APPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-L--- 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc------cccccccccccccccccccccccccccccccccccccc-ccccccccccc-c---
Confidence 6788999999996542211 1232234444 444555578999999999999876543 55567777766 4
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..++.++|.+++. +.-+. ..+...+..++.. +.+.++++++..++++.....-.|+
T Consensus 89 -------~~~~~~~A~~~~~-------~~~~~--~~~~~~l~~~l~~------~~~~~~~~~~~~~l~~~~~~~~~~~-- 144 (280)
T PF13429_consen 89 -------QDGDPEEALKLAE-------KAYER--DGDPRYLLSALQL------YYRLGDYDEAEELLEKLEELPAAPD-- 144 (280)
T ss_dssp ---------------------------------------------H-------HHHTT-HHHHHHHHHHHHH-T---T--
T ss_pred -------ccccccccccccc-------ccccc--ccccchhhHHHHH------HHHHhHHHHHHHHHHHHHhccCCCC--
Confidence 5677888888773 22111 1244446667777 8888999999999988765321111
Q ss_pred ccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHH
Q 005628 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMS 399 (687)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~ 399 (687)
+...|.. +-..+.+.|+.++|.++|++..+.. | |....+.++..+..
T Consensus 145 -----------------------------~~~~~~~-~a~~~~~~G~~~~A~~~~~~al~~~--P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 145 -----------------------------SARFWLA-LAEIYEQLGDPDKALRDYRKALELD--PDDPDARNALAWLLID 192 (280)
T ss_dssp ------------------------------HHHHHH-HHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -----------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHH
Confidence 1112223 5567788999999999999988753 5 47788999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005628 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (687)
.|+.+++.++++...... ..|...+..+-.+|...|+.++|...|+...... +-|..+...+-+++...|+.++|..+
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~ 270 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRL 270 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccccccccccccccccccccc
Confidence 999999999998887763 5566778889999999999999999999987642 33778888899999999999999998
Q ss_pred HHHHHh
Q 005628 480 LHKLRT 485 (687)
Q Consensus 480 l~~M~~ 485 (687)
.++...
T Consensus 271 ~~~~~~ 276 (280)
T PF13429_consen 271 RRQALR 276 (280)
T ss_dssp ------
T ss_pred cccccc
Confidence 876543
|
|
| >PF11977 RNase_Zc3h12a: Zc3h12a-like Ribonuclease NYN domain; InterPro: IPR021869 This domain is found in the Zc3h12a protein which has shown to be a ribonuclease that controls the stability of a set of inflammatory genes [] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.1e-08 Score=96.62 Aligned_cols=78 Identities=23% Similarity=0.309 Sum_probs=61.1
Q ss_pred EEEeccchhcc--cCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChHHHHHHHHHHhCCceeeCCCCCC
Q 005628 607 AVVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRALIEKWKNADALYATPTGSN 684 (687)
Q Consensus 607 ~vIDGanvg~~--~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~~l~~~w~~~~~ly~tp~~~n 684 (687)
+||||+|||++ ++..|+..+|..+|++|.+ .|..+++|++..+........+...+++++|.++|.||.||++++
T Consensus 5 VVIDG~NVA~~~~~~~~f~~~~i~~~v~~~~~---rG~~~v~v~~~~~~~~~~~~~~~~~~~L~~l~~~~~i~~tp~~~~ 81 (155)
T PF11977_consen 5 VVIDGSNVAYSHGNQKFFSVRGIQIAVEYFKS---RGHEVVVVFPPNYRYKKLAKKSDDQEELEKLIRKGIIYFTPSGSN 81 (155)
T ss_dssp EEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHH---TT---EEEEEEGGGGS-TTS-EESTCHHHHHHHTTSEEEE-EEEE
T ss_pred EEEeCHHHHhhcCCCCCcCHHHHHHHHHHHHH---cCCCeEEEEcchhhhccccCCCChHHHHHHHHHCCeEEEcCCCCC
Confidence 89999999874 3336899999999999999 478889999988854333456777889999999999999999998
Q ss_pred --------CCC
Q 005628 685 --------DDW 687 (687)
Q Consensus 685 --------DDw 687 (687)
|||
T Consensus 82 ~g~~~~~ydD~ 92 (155)
T PF11977_consen 82 YGSRSRNYDDR 92 (155)
T ss_dssp TTEEEEB-HHH
T ss_pred CCCcccccchH
Confidence 987
|
It has been suggested that this domain belongs to the PIN domain superfamily []. ; PDB: 3V33_A 3V34_B 3V32_B. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-05 Score=76.63 Aligned_cols=127 Identities=17% Similarity=0.134 Sum_probs=96.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
+...|...|++++|.+.|++...... ......+..+...+...|++++|...+.+..... ..+...|..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcC
Confidence 55667788888888888888876432 2234566777778888899999999988877652 223567778888888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.++|.+.+++..+. ...+...+..+...+...|+.++|..+.+.+...
T Consensus 184 ~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 184 QYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred CHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999888776 3446677777888888889999988888777654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.49 E-value=9e-07 Score=92.32 Aligned_cols=251 Identities=15% Similarity=0.083 Sum_probs=106.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC
Q 005628 197 ELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD 276 (687)
Q Consensus 197 lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~ 276 (687)
+-..+.+.|++++|+++++.-....-.|+...|-.++.-++. ..++.+.|...+. ++... +-.
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~---------~~~~~~~A~~ay~-------~l~~~-~~~ 76 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAW---------SLGDYDEAIEAYE-------KLLAS-DKA 76 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc---------ccccccccccccc-------ccccc-ccc
Confidence 356677899999999999766554435666666666555553 5677888888884 44332 211
Q ss_pred CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHH
Q 005628 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADE 356 (687)
Q Consensus 277 d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~ 356 (687)
+...|..++. +...+++++|..++.+..++. ++... +..
T Consensus 77 ~~~~~~~l~~-------l~~~~~~~~A~~~~~~~~~~~--~~~~~--------------------------------l~~ 115 (280)
T PF13429_consen 77 NPQDYERLIQ-------LLQDGDPEEALKLAEKAYERD--GDPRY--------------------------------LLS 115 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-------ccccccccccccccccccccc--cccch--------------------------------hhH
Confidence 2222433333 347788888888776654432 22211 223
Q ss_pred HHHHHHHhhccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHh
Q 005628 357 IRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (687)
Q Consensus 357 ~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~ 434 (687)
++..+.+.++++++.+++++.... ....+...|..+...+.+.|+.++|.+.+++..+. .|+ ....+.++..+..
T Consensus 116 -~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~ 192 (280)
T PF13429_consen 116 -ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPDDPDARNALAWLLID 192 (280)
T ss_dssp ---H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCT
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHH
Confidence 666788899999999999998754 34578889999999999999999999999998875 364 6778889999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-ChhHHHH-HHHHHcCHHHHHhh
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~~~-I~~~~~~~~~~~a~ 511 (687)
.|+.+++.++++...+.. ..|...+..+-.+|...|+.++|..+|++.... .+ +|.+... -..+...|...+|.
T Consensus 193 ~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~d~~~~~~~a~~l~~~g~~~~A~ 268 (280)
T PF13429_consen 193 MGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPDDPLWLLAYADALEQAGRKDEAL 268 (280)
T ss_dssp TCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHT---------
T ss_pred CCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccccccccccccccccccccccccc
Confidence 999999999998887764 556667889999999999999999999998886 43 3333322 44455555544443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=8e-05 Score=88.75 Aligned_cols=287 Identities=8% Similarity=-0.014 Sum_probs=165.7
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
...++..+|.++++..... . +.+...+..+...+.+.|++++|+..+++.... -+.+.. +..+-.++.
T Consensus 60 ~~~g~~~~A~~~~~~al~~--~-----P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~--- 127 (765)
T PRK10049 60 RNLKQWQNSLTLWQKALSL--E-----PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYK--- 127 (765)
T ss_pred HHcCCHHHHHHHHHHHHHh--C-----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHH---
Confidence 3556677777777775332 1 112244556666677777777777777777654 222333 555555555
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.++|...+. +.... .-.+...+..+... +...+..+.|+..++.... .|+..
T Consensus 128 -------~~g~~~~Al~~l~-------~al~~-~P~~~~~~~~la~~------l~~~~~~e~Al~~l~~~~~---~p~~~ 183 (765)
T PRK10049 128 -------RAGRHWDELRAMT-------QALPR-APQTQQYPTEYVQA------LRNNRLSAPALGAIDDANL---TPAEK 183 (765)
T ss_pred -------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCChHHHHHHHHhCCC---CHHHH
Confidence 5667777777763 22221 11122233334444 5556666666666654332 22210
Q ss_pred cc----chhhHhhcc-------------ccccCCCcchhccc-CCCCChh-hhHHH---HHHHHHhhccHHHHHHHHHHH
Q 005628 321 MK----LNSQLLDGR-------------SNLERGPDDQSRKK-DWSIDNQ-DADEI---RLSEDAKKYAFQRGFEIYEKM 378 (687)
Q Consensus 321 ty----~~~~li~g~-------------~~~a~~~~~~m~~~-g~~pd~~-tyn~~---lI~~~~k~g~~~~A~~lf~~M 378 (687)
.. ....++... .+.|...+..+... .-.|+.. .+... .+..+...|++++|...|+++
T Consensus 184 ~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~l 263 (765)
T PRK10049 184 RDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRL 263 (765)
T ss_pred HHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHh
Confidence 00 000011000 01122233333322 1222221 11111 123445778999999999999
Q ss_pred HhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 379 CLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 379 ~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
.+.+.. |+-. --.+...|...|++++|..+|+.+.... |. ...+..|..++...|+.++|.++++.+.+..
T Consensus 264 l~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 264 KAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred hccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 987642 4322 2225678999999999999999987542 32 2346667778899999999999999998652
Q ss_pred -----------CCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 453 -----------VYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 453 -----------v~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-.|+. ..+..+...+...|+.++|+.+|+++...
T Consensus 341 P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 341 PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12342 34556777888999999999999999887
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=2e-05 Score=86.55 Aligned_cols=276 Identities=7% Similarity=-0.017 Sum_probs=178.8
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcc
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVL--LYLCSSAA 240 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~L--l~~~~~~~ 240 (687)
.|+...|.+....-.+ ....|. ..|-..-.+..+.|+++.|...|.++.+ ..|+...+-.+ ...+.
T Consensus 97 eGd~~~A~k~l~~~~~------~~~~p~-l~~llaA~aA~~~g~~~~A~~~l~~A~~--~~~~~~~~~~l~~a~l~l--- 164 (398)
T PRK10747 97 EGDYQQVEKLMTRNAD------HAEQPV-VNYLLAAEAAQQRGDEARANQHLERAAE--LADNDQLPVEITRVRIQL--- 164 (398)
T ss_pred CCCHHHHHHHHHHHHh------cccchH-HHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHH---
Confidence 4788888877776522 111233 4454445555899999999999999975 45665544322 33444
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.+.|...++ ++.+. .-.+...+..+... |.+.|++++|..++..+.+.+..++..
T Consensus 165 -------~~g~~~~Al~~l~-------~~~~~-~P~~~~al~ll~~~------~~~~gdw~~a~~~l~~l~k~~~~~~~~ 223 (398)
T PRK10747 165 -------ARNENHAARHGVD-------KLLEV-APRHPEVLRLAEQA------YIRTGAWSSLLDILPSMAKAHVGDEEH 223 (398)
T ss_pred -------HCCCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHHHhHHHHHHHHHHHHHcCCCCHHH
Confidence 6799999999995 44443 22255557778888 999999999999999999987654331
Q ss_pred -------ccchhhHhhcc-ccccC----CCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHH
Q 005628 321 -------MKLNSQLLDGR-SNLER----GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (687)
Q Consensus 321 -------ty~~~~li~g~-~~~a~----~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (687)
+|. .++.-. ..... .++..+.. ..+.+...... +...+...|+.++|.+++++..+. .||..
T Consensus 224 ~~~l~~~a~~--~l~~~~~~~~~~~~l~~~w~~lp~-~~~~~~~~~~~-~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~ 297 (398)
T PRK10747 224 RAMLEQQAWI--GLMDQAMADQGSEGLKRWWKNQSR-KTRHQVALQVA-MAEHLIECDDHDTAQQIILDGLKR--QYDER 297 (398)
T ss_pred HHHHHHHHHH--HHHHHHHHhcCHHHHHHHHHhCCH-HHhCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc--CCCHH
Confidence 111 111100 00000 01111111 11112223333 667888888888888888887763 44442
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
-.++.+.+..++.+++.+..+...+. .||.. .+.++=..|.+.+++++|.+.|+...+. .|+..+|..|-..+
T Consensus 298 --l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~ 371 (398)
T PRK10747 298 --LVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADAL 371 (398)
T ss_pred --HHHHHhhccCCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHH
Confidence 12344445568888888888877765 24443 4666667778888888888888888764 58888888888888
Q ss_pred HhcCChHHHHHHHHHH
Q 005628 468 VEAGKGDRVYYLLHKL 483 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M 483 (687)
.+.|+.++|.+++++=
T Consensus 372 ~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 372 DRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHcCCHHHHHHHHHHH
Confidence 8888888888887754
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.1e-05 Score=95.41 Aligned_cols=294 Identities=11% Similarity=-0.002 Sum_probs=176.4
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
..+.++.++|.+.|+...... | .+...+..+-..+.+.|++++|++.|++..+.. +.+...+..+...|...
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~--P-----~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~ 432 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD--N-----TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQ 432 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 447789999999999986531 1 234677788899999999999999999998642 22333444443333210
Q ss_pred ccC--------------------------------CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccc
Q 005628 240 AVG--------------------------------VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSP 287 (687)
Q Consensus 240 ~~~--------------------------------~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~ 287 (687)
... +..+...|+.++|...|. +.... .-.+...+..+-..
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~-------~Al~~-~P~~~~~~~~LA~~ 504 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQR-------QRLAL-DPGSVWLTYRLAQD 504 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH
Confidence 000 000114678888888884 33221 11133345556666
Q ss_pred cccccccccCCChhhHHHHHHHHHhcCCCCCccc--cchhhHhhccc--cccCCCcchhcccCCCCChhh---------h
Q 005628 288 MIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM--KLNSQLLDGRS--NLERGPDDQSRKKDWSIDNQD---------A 354 (687)
Q Consensus 288 ~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t--y~~~~li~g~~--~~a~~~~~~m~~~g~~pd~~t---------y 354 (687)
+.+.|++++|...|++..+. .|+... |..+.+..... ..|...+..+......++... +
T Consensus 505 ------~~~~G~~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 505 ------LRQAGQRSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred ------HHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 88999999999999998764 343321 21111111100 122222222222111111111 1
Q ss_pred HHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005628 355 DEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (687)
Q Consensus 355 n~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~ 434 (687)
.. +...+...|+.++|.++++. .+.+...+..|-..+.+.|+.++|++.|+...+.. +-+...+..+...|..
T Consensus 577 l~-~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 577 LE-TANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA 649 (1157)
T ss_pred HH-HHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 11 34556677778888877762 23455566677777778888888888887777652 2245667777777888
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+.++|.++++...+. .| +...+..+-..+...|+.++|..+++++...
T Consensus 650 ~g~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 650 QGDLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 88888888888766543 23 3445556666777788888888888877665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=85.43 Aligned_cols=245 Identities=13% Similarity=0.005 Sum_probs=168.8
Q ss_pred CCHHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchh
Q 005628 205 GDVMGAIRLYDKAQREG-IKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLD 282 (687)
Q Consensus 205 g~~~~A~~lf~~M~~~G-i~pd-~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn 282 (687)
+++++|++.|+.....+ ..|+ ...|+.+-..+. ..|+.++|...|. +.... .-.+...|.
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~----------~~g~~~eA~~~~~-------kal~l-~P~~~~~~~ 369 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKC----------LKGKHLEALADLS-------KSIEL-DPRVTQSYI 369 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-CCCcHHHHH
Confidence 67899999999998765 3443 445666666666 6899999999995 22221 111233466
Q ss_pred ccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHH
Q 005628 283 YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSED 362 (687)
Q Consensus 283 ~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~ 362 (687)
.+-.. +...|++++|...|++..+. .|+. ...|.. +-..|
T Consensus 370 ~la~~------~~~~g~~~eA~~~~~~al~~--~p~~-------------------------------~~~~~~-lg~~~ 409 (615)
T TIGR00990 370 KRASM------NLELGDPDKAEEDFDKALKL--NSED-------------------------------PDIYYH-RAQLH 409 (615)
T ss_pred HHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHHH
Confidence 66666 77899999999999987664 2321 223334 66778
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
...|++++|...|++..+.. +.+...|..+...+.+.|++++|+..|++.... ..-+...|+.+-..+...|++++|.
T Consensus 410 ~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 410 FIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHH
Confidence 88999999999999998754 235677888888999999999999999998764 2224578888899999999999999
Q ss_pred HHHHHHHHCCCC-----CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHH-HHHHHcCHHHHHhh
Q 005628 443 SVEEHMLEHGVY-----PEE-PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 443 ~l~~~M~~~gv~-----pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~-I~~~~~~~~~~~a~ 511 (687)
+.|+...+..-. ++. ..++..+..+...|++++|..++++.... .+... .+.. ...+...|...+|.
T Consensus 488 ~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi 562 (615)
T TIGR00990 488 EKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEAL 562 (615)
T ss_pred HHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999998764321 111 12222233344579999999999987766 33222 3333 44444555444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00011 Score=74.75 Aligned_cols=245 Identities=16% Similarity=0.116 Sum_probs=134.5
Q ss_pred ccCccchHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 005628 142 KIGIKSSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQF-QLRVELDMCSKRGDVMGAIRLYDKAQRE 220 (687)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~-tyn~lI~~~~k~g~~~~A~~lf~~M~~~ 220 (687)
.+....+..+|-.++ ...++|.++|-+|.+ ..|..+ +--+|=+-|-+.|.++.|++++..+.++
T Consensus 34 ~lsr~Yv~GlNfLLs-------~Q~dKAvdlF~e~l~--------~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s 98 (389)
T COG2956 34 RLSRDYVKGLNFLLS-------NQPDKAVDLFLEMLQ--------EDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES 98 (389)
T ss_pred hccHHHHhHHHHHhh-------cCcchHHHHHHHHHh--------cCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC
Confidence 344555666677666 567889999999954 122222 3334556677889999999999988764
Q ss_pred CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCCh
Q 005628 221 GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRF 300 (687)
Q Consensus 221 Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~ 300 (687)
||. |++-=+.+.-.. +.+|...|-+|+|+.+|
T Consensus 99 ---pdl-T~~qr~lAl~qL---~~Dym~aGl~DRAE~~f----------------------------------------- 130 (389)
T COG2956 99 ---PDL-TFEQRLLALQQL---GRDYMAAGLLDRAEDIF----------------------------------------- 130 (389)
T ss_pred ---CCC-chHHHHHHHHHH---HHHHHHhhhhhHHHHHH-----------------------------------------
Confidence 432 333333222210 01222455555555555
Q ss_pred hhHHHHHHHHHhcCC-CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHH
Q 005628 301 DDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMC 379 (687)
Q Consensus 301 ~~A~~lf~eM~~~g~-~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~ 379 (687)
..+.+.|. .++.- -.|+.-|-+..++++|.++-+++.
T Consensus 131 -------~~L~de~efa~~Al-----------------------------------qqLl~IYQ~treW~KAId~A~~L~ 168 (389)
T COG2956 131 -------NQLVDEGEFAEGAL-----------------------------------QQLLNIYQATREWEKAIDVAERLV 168 (389)
T ss_pred -------HHHhcchhhhHHHH-----------------------------------HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333210 00000 015556666666666666666666
Q ss_pred hCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCChHHHHHHHHHHHHCCCC
Q 005628 380 LDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 380 ~~gi~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
+.|-.+.- .-|.-|...+....+++.|..+++.-.+.. |+.+--++++ +.+...|+.+.|.+.++...+.+..
T Consensus 169 k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~ 246 (389)
T COG2956 169 KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPE 246 (389)
T ss_pred HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChH
Confidence 55433321 123333334444566666666666554432 3333333333 3455567777777777766666555
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.-..+...|..+|...|+.++....+.++.+...|+.+.
T Consensus 247 yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 247 YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 555566666777777777777777776666664454444
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.2e-05 Score=82.54 Aligned_cols=283 Identities=9% Similarity=-0.027 Sum_probs=174.8
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHh
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY--HYNVLLYLCSS 238 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~--tyn~Ll~~~~~ 238 (687)
..|+...|.+.+....+. .|+ ...|-..-.+..+.|+.+.|.+.|.+..+.- |+.. .--+....+.
T Consensus 96 ~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l- 164 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILL- 164 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHH-
Confidence 568899999999776321 233 2334444567778899999999999987543 4432 3333345555
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|+.+.|...+. ++.+. .-.+...+-.+... +.+.|++++|.+++....+.++.+.
T Consensus 165 ---------~~~~~~~Al~~l~-------~l~~~-~P~~~~~l~ll~~~------~~~~~d~~~a~~~l~~l~k~~~~~~ 221 (409)
T TIGR00540 165 ---------AQNELHAARHGVD-------KLLEM-APRHKEVLKLAEEA------YIRSGAWQALDDIIDNMAKAGLFDD 221 (409)
T ss_pred ---------HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 6789999999994 55553 32255556677777 9999999999999999999875433
Q ss_pred ccccc------hhhHhhccccccCCCcchhcccCC---CCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHH
Q 005628 319 GHMKL------NSQLLDGRSNLERGPDDQSRKKDW---SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEAS 389 (687)
Q Consensus 319 ~~ty~------~~~li~g~~~~a~~~~~~m~~~g~---~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~t 389 (687)
..... .+.+-.+....+...+..+...-- ..+...+-. +...+...|+.++|.+++++..+.. ||...
T Consensus 222 ~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~-~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~ 298 (409)
T TIGR00540 222 EEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIA-LAEHLIDCDDHDSAQEIIFDGLKKL--GDDRA 298 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHH-HHHHHHHCCChHHHHHHHHHHHhhC--CCccc
Confidence 32110 000111111111112222221110 013334444 6677888888888888888887753 33321
Q ss_pred H-HHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCcc---hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 390 L-TAVGRM--AMSMGDGDMAFDMVKRMKSLGINPRLR---SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 390 y-n~LI~~--~~~~g~~~~A~~l~~~M~~~g~~Pd~~---ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
. -.++.. ....++.+.+.+.++...+. .|+-. ...++=..|.+.|++++|.+.|+........||...+..+
T Consensus 299 ~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~L 376 (409)
T TIGR00540 299 ISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMA 376 (409)
T ss_pred chhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHH
Confidence 0 012222 23346677777777665543 34444 3335556667788888888888854444456888888888
Q ss_pred HHHHHhcCChHHHHHHHHHH
Q 005628 464 LRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M 483 (687)
-..+-+.|+.++|.+++++-
T Consensus 377 a~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 377 ADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 88888888888888887763
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.1e-05 Score=83.53 Aligned_cols=282 Identities=11% Similarity=0.011 Sum_probs=180.9
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|+.+++.|++.. |+ .+..|--+-.++...|+.+.|...|.+..+ +.|+.+...+-+.-+-+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~--p~-----fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlk 195 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELK--PK-----FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLK 195 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcC--ch-----hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHH
Confidence 4448899999999999997542 21 246899999999999999999999998875 46776665555544443
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|++++|..-+. .-++.+.+ =.+.|+-|=-. +...|++-.|..-|++-... .|+
T Consensus 196 ---------a~Grl~ea~~cYl------kAi~~qp~--fAiawsnLg~~------f~~~Gei~~aiq~y~eAvkl--dP~ 250 (966)
T KOG4626|consen 196 ---------AEGRLEEAKACYL------KAIETQPC--FAIAWSNLGCV------FNAQGEIWLAIQHYEEAVKL--DPN 250 (966)
T ss_pred ---------hhcccchhHHHHH------HHHhhCCc--eeeeehhcchH------HhhcchHHHHHHHHHHhhcC--CCc
Confidence 3577888877763 12222111 23457777666 77888888888888877654 333
Q ss_pred cc-cc-chhhHhhccccccCCCcchh-----cccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHH
Q 005628 319 GH-MK-LNSQLLDGRSNLERGPDDQS-----RKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EAS 389 (687)
Q Consensus 319 ~~-ty-~~~~li~g~~~~a~~~~~~m-----~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~t 389 (687)
-. .| |.+.+.. +.+.|+.. ......|+ .+.|.+ |-..|-..|.+|-|...|++-.+. .|+ ...
T Consensus 251 f~dAYiNLGnV~k-----e~~~~d~Avs~Y~rAl~lrpn~A~a~gN-la~iYyeqG~ldlAI~~Ykral~~--~P~F~~A 322 (966)
T KOG4626|consen 251 FLDAYINLGNVYK-----EARIFDRAVSCYLRALNLRPNHAVAHGN-LACIYYEQGLLDLAIDTYKRALEL--QPNFPDA 322 (966)
T ss_pred chHHHhhHHHHHH-----HHhcchHHHHHHHHHHhcCCcchhhccc-eEEEEeccccHHHHHHHHHHHHhc--CCCchHH
Confidence 21 11 1111111 11111111 11233443 234444 555677778888888888877653 344 467
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSV 468 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~ 468 (687)
||.|-.++-..|++.+|.+.++..... +.-...+.+.|-..|...|.+++|..+|....+ +.|. ...+|-|-..|-
T Consensus 323 y~NlanALkd~G~V~ea~~cYnkaL~l-~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 323 YNNLANALKDKGSVTEAVDCYNKALRL-CPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYK 399 (966)
T ss_pred HhHHHHHHHhccchHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHH
Confidence 888888888888888888888776554 212235567777777888888888888776655 3444 345666777777
Q ss_pred hcCChHHHHHHHHHHHh
Q 005628 469 EAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~ 485 (687)
+.|++++|..-+++-.+
T Consensus 400 qqgnl~~Ai~~Ykealr 416 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALR 416 (966)
T ss_pred hcccHHHHHHHHHHHHh
Confidence 77888888777776554
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.00054 Score=81.75 Aligned_cols=290 Identities=10% Similarity=-0.037 Sum_probs=189.4
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSS 238 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~~ 238 (687)
+.+.++.++|...++...+. .| .+.. +..+-..+...|+.++|+..++++.+. .|+ ...+..+..++.
T Consensus 93 l~~~g~~~eA~~~l~~~l~~--~P-----~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~- 161 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG--AP-----DKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALR- 161 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CC-----CCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH-
Confidence 44788999999999998543 12 2234 888888999999999999999999875 344 444455666665
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccC----CCC----CccchhccccccccccccccCCCh---hhHHHHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR----DMD----NNGQLDYGSSPMIDKLESNSSYRF---DDLDSTF 307 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~----g~~----d~~tyn~Li~~~~~~~~~~~~g~~---~~A~~lf 307 (687)
..|..+.|...+. ...... +.. .......+... ....+++ ++|...+
T Consensus 162 ---------~~~~~e~Al~~l~-------~~~~~p~~~~~l~~~~~~~~~r~~~~~~------~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 162 ---------NNRLSAPALGAID-------DANLTPAEKRDLEADAAAELVRLSFMPT------RSEKERYAIADRALAQY 219 (765)
T ss_pred ---------HCCChHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHhhcccc------cChhHHHHHHHHHHHHH
Confidence 5677788887774 111100 000 00001112222 3344455 7788888
Q ss_pred HHHHhc-CCCCCccc-cch------h-hHhhccccccCCCcchhcccCCC-CCh-hhhHHHHHHHHHhhccHHHHHHHHH
Q 005628 308 NEKENL-GQFSNGHM-KLN------S-QLLDGRSNLERGPDDQSRKKDWS-IDN-QDADEIRLSEDAKKYAFQRGFEIYE 376 (687)
Q Consensus 308 ~eM~~~-g~~Pd~~t-y~~------~-~li~g~~~~a~~~~~~m~~~g~~-pd~-~tyn~~lI~~~~k~g~~~~A~~lf~ 376 (687)
+.+.+. ...|+... +.. + .+..+-...|...|..+...+-. |+. ..+ +-..|...|++++|..+|+
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~---la~~yl~~g~~e~A~~~l~ 296 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW---VASAYLKLHQPEKAQSILT 296 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH---HHHHHHhcCCcHHHHHHHH
Confidence 888754 33343321 110 0 11222225566677777766522 332 222 3467888999999999999
Q ss_pred HHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----------CCCC---cchHHHHHHHHHhCCChH
Q 005628 377 KMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----------INPR---LRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 377 ~M~~~gi~p---d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----------~~Pd---~~ty~~lI~~~~~~g~~~ 439 (687)
++....... ....+..|..++...|++++|..+++.+.... -.|+ ...+..+...+...|+.+
T Consensus 297 ~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~ 376 (765)
T PRK10049 297 ELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP 376 (765)
T ss_pred HHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence 987643211 13456667778889999999999999887652 0122 123456677888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.++++++... .+-+...+..+...+...|++++|+..+++....
T Consensus 377 eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 377 QAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 999999998765 3445778888888999999999999999988876
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.7e-06 Score=59.09 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (687)
++||++|++|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999984
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00032 Score=84.75 Aligned_cols=230 Identities=8% Similarity=-0.039 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
+...|..+-.++.. |++.+|+..|.+.... .|+......+...+. ..|+.++|...|. ++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~----------~~Gr~eeAi~~~r-------ka 535 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAY----------QVEDYATALAAWQ-------KI 535 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHH----------HCCCHHHHHHHHH-------HH
Confidence 44566666666665 8999999988877754 377554333344444 6899999999994 33
Q ss_pred cccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCC
Q 005628 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (687)
Q Consensus 270 ~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p 349 (687)
... -++...+..+... +.+.|++++|...|++..+.. |+....
T Consensus 536 ~~~--~p~~~a~~~la~a------ll~~Gd~~eA~~~l~qAL~l~--P~~~~l--------------------------- 578 (987)
T PRK09782 536 SLH--DMSNEDLLAAANT------AQAAGNGAARDRWLQQAEQRG--LGDNAL--------------------------- 578 (987)
T ss_pred hcc--CCCcHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC--CccHHH---------------------------
Confidence 321 1122224444444 778999999999999887653 332111
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPA 428 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~l 428 (687)
+.. +...+.+.|++++|...|++..+. .|+...|..+-..+.+.|+.++|...++..... .|+. ..++.+
T Consensus 579 ----~~~-La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nL 649 (987)
T PRK09782 579 ----YWW-LHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAAL 649 (987)
T ss_pred ----HHH-HHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 111 223334559999999999999865 467889999999999999999999999998775 3554 556666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..+...|+.++|.++++...+.. +-+...+..+-.++...|++++|+..|++....
T Consensus 650 G~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 650 GYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 678999999999999999988753 235677888999999999999999999998877
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.3e-06 Score=57.69 Aligned_cols=33 Identities=30% Similarity=0.673 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE 456 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd 456 (687)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566666666666666666666666666666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00016 Score=90.33 Aligned_cols=255 Identities=11% Similarity=0.019 Sum_probs=172.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCC
Q 005628 196 VELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (687)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g 274 (687)
.+...+...|++++|++.|++..+. .| +...+..+-..|. +.|+.++|...|. +.... .
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~----------~~G~~~~A~~~l~-------~al~~-~ 525 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLR----------QAGQRSQADALMR-------RLAQQ-K 525 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHc-C
Confidence 3445677889999999999999865 34 4566677777787 7899999999995 33332 1
Q ss_pred CCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchh-------hHhhcc-----ccccCCCcchh
Q 005628 275 MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNS-------QLLDGR-----SNLERGPDDQS 342 (687)
Q Consensus 275 ~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~-------~li~g~-----~~~a~~~~~~m 342 (687)
-.+...+..+.-. +...++.++|...++.+......++...+... .+.+.+ -.+|..++.
T Consensus 526 P~~~~~~~a~al~------l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-- 597 (1157)
T PRK11447 526 PNDPEQVYAYGLY------LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-- 597 (1157)
T ss_pred CCCHHHHHHHHHH------HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH--
Confidence 1122222222222 55678899999988876543222222111100 001111 122222222
Q ss_pred cccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-
Q 005628 343 RKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR- 421 (687)
Q Consensus 343 ~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd- 421 (687)
..+.+...+.. +-..|.+.|+.++|.+.|++..... +-+...+..+...|...|+.++|.+.++..... .|+
T Consensus 598 ---~~p~~~~~~~~-La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p~~ 670 (1157)
T PRK11447 598 ---QQPPSTRIDLT-LADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--ANDS 670 (1157)
T ss_pred ---hCCCCchHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCC
Confidence 11223333444 7788999999999999999998864 346889999999999999999999999987654 344
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 422 LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YP---EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~p---d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
...+..+-..+...|+.++|.++++.+....- .| +...+..+-..+...|+.++|...|++...
T Consensus 671 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 671 LNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556677788899999999999999987532 22 234666667888999999999999998764
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.9e-06 Score=57.18 Aligned_cols=33 Identities=30% Similarity=0.585 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL 224 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p 224 (687)
.+||++|.+|++.|+++.|+++|++|++.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 699999999999999999999999999999998
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00069 Score=80.30 Aligned_cols=128 Identities=13% Similarity=0.008 Sum_probs=101.7
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----CCCCcchHHHHHHHHH
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFC 433 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~ 433 (687)
+-++.+.|++.++.+.|+.|...|.+.-..+--++.++|...+.+++|..+++...... ..++......|..+|.
T Consensus 299 l~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~l 378 (822)
T PRK14574 299 LGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLN 378 (822)
T ss_pred HHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHH
Confidence 45677889999999999999998876556788899999999999999999999986542 2234444688999999
Q ss_pred hCCChHHHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHG-------------VYPEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~g-------------v~pd~~t-y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+++++|..+++.+.+.- -.||-.. +..++..+...|++.+|+++++++...
T Consensus 379 d~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~ 445 (822)
T PRK14574 379 ESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST 445 (822)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998731 1123333 344566778999999999999999877
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00052 Score=67.89 Aligned_cols=157 Identities=13% Similarity=0.055 Sum_probs=125.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+.. |+.. ..+.. +...|...|++++|.+
T Consensus 41 ~~~~~~~~~A~~~~~~~l~~~--p~~~-------------------------------~~~~~-la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 41 YLEQGDLEVAKENLDKALEHD--PDDY-------------------------------LAYLA-LALYYQQLGELEKAED 86 (234)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccH-------------------------------HHHHH-HHHHHHHcCCHHHHHH
Confidence 788999999999999886542 3321 12333 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
.|++..+.. +.+...+..+...+...|++++|...++........| ....+..+-..+...|+.++|...+++..+..
T Consensus 87 ~~~~al~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 165 (234)
T TIGR02521 87 SFRRALTLN-PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID 165 (234)
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999988764 3456788888999999999999999999988753222 34567777888999999999999999988753
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...+..+...+...|++++|..++++....
T Consensus 166 -~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 166 -PQRPESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred -cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 224667888999999999999999999998876
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.6e-06 Score=55.72 Aligned_cols=32 Identities=31% Similarity=0.542 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP 420 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P 420 (687)
|||++|++|++.|+++.|+++|++|++.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0015 Score=77.51 Aligned_cols=284 Identities=9% Similarity=-0.045 Sum_probs=187.5
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH---H
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQ--FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL---Y 234 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~--~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll---~ 234 (687)
..+.|+...|+..|++..+. .|+. ..+ .++..+...|+.++|+.++++.. .|+...|..++ .
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--------GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--------CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 44778889999999998432 2331 233 88888889999999999999987 44333333333 3
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
.|. ..|+.++|.+++. ++.+. .-.|.-.+..|+.. +...++.++|+..+......
T Consensus 111 ly~----------~~gdyd~Aiely~-------kaL~~-dP~n~~~l~gLa~~------y~~~~q~~eAl~~l~~l~~~- 165 (822)
T PRK14574 111 AYR----------NEKRWDQALALWQ-------SSLKK-DPTNPDLISGMIMT------QADAGRGGVVLKQATELAER- 165 (822)
T ss_pred HHH----------HcCCHHHHHHHHH-------HHHhh-CCCCHHHHHHHHHH------HhhcCCHHHHHHHHHHhccc-
Confidence 454 6799999999994 55543 22243445566666 88899999999999988765
Q ss_pred CCCCccccchhhHhhcc---c--cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHH-------------
Q 005628 315 QFSNGHMKLNSQLLDGR---S--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYE------------- 376 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~---~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~------------- 376 (687)
.|+...|- .+..-+ . ..|...+.++... .|+...+..-++..+.+.|-...|.++..
T Consensus 166 -dp~~~~~l--~layL~~~~~~~~~AL~~~ekll~~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 166 -DPTVQNYM--TLSYLNRATDRNYDALQASSEAVRL--APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred -CcchHHHH--HHHHHHHhcchHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 45544442 221111 1 1355566666664 46655444335566666654444443332
Q ss_pred -----------------------------------HHHhC-CCCCC-HHH-HHHH---HHHHHHcCChHHHHHHHHHHHH
Q 005628 377 -----------------------------------KMCLD-EVPMN-EAS-LTAV---GRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 377 -----------------------------------~M~~~-gi~pd-~~t-yn~L---I~~~~~~g~~~~A~~l~~~M~~ 415 (687)
.+... +-.|. ..- -.+. +-++.+.|+..++.+.++.|+.
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 22221 11122 111 1222 3367778899999999999998
Q ss_pred cCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|.+.-..+=-.+.++|...+..++|..+++.+.... ..++......|.-+|...+++++|..+++++.+.
T Consensus 321 ~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 321 EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 8764334466788899999999999999999886543 2345555788899999999999999999999884
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=79.57 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=165.3
Q ss_pred cCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCC
Q 005628 164 TNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGV 243 (687)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~ 243 (687)
++.++|...|..-... .|+......+...+.+.|++++|...|+++... .|+...+..+..++.
T Consensus 490 ~~~~eAi~a~~~Al~~--------~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all------ 553 (987)
T PRK09782 490 TLPGVALYAWLQAEQR--------QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQ------ 553 (987)
T ss_pred CCcHHHHHHHHHHHHh--------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHH------
Confidence 6777888877776432 244344334445556899999999999997643 455555556666666
Q ss_pred cccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccc
Q 005628 244 VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (687)
Q Consensus 244 ~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (687)
+.|+.++|...+. +.... ...+...+..+... ....|++++|...|++-.+. .|+.
T Consensus 554 ----~~Gd~~eA~~~l~-------qAL~l-~P~~~~l~~~La~~------l~~~Gr~~eAl~~~~~AL~l--~P~~---- 609 (987)
T PRK09782 554 ----AAGNGAARDRWLQ-------QAEQR-GLGDNALYWWLHAQ------RYIPGQPELALNDLTRSLNI--APSA---- 609 (987)
T ss_pred ----HCCCHHHHHHHHH-------HHHhc-CCccHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CCCH----
Confidence 7899999999995 33222 11111112222222 33559999999999887654 2432
Q ss_pred hhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh
Q 005628 324 NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG 403 (687)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~ 403 (687)
..|.. +-..+.+.|+.++|.+.|++..... +-+...++.+-..+...|+.
T Consensus 610 ----------------------------~a~~~-LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 610 ----------------------------NAYVA-RATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred ----------------------------HHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCH
Confidence 23334 6678899999999999999998764 33566788888899999999
Q ss_pred HHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 005628 404 DMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 404 ~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
++|..+++...+. .| +...+..+-.++...|++++|...|+...+. .|+. .+.-..-....+..+++.|.+-+.
T Consensus 660 eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 660 AQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999988765 34 4567888888999999999999999999764 3543 222222333344444444444433
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0026 Score=70.84 Aligned_cols=241 Identities=12% Similarity=0.003 Sum_probs=159.0
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCC-CCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKK-DRSEQFQ-LRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQ----YHY 229 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g-~~P~~~t-yn~lI~~~~k~g~~~~A~~lf~~M~~~---Gi~pd~----~ty 229 (687)
.+...++.+.|..+|..-.+. +.+..| ..|.+.+ .+.+=..|...+++++|..+|+++..- .+-++. .|+
T Consensus 208 ~y~~~g~~e~A~~l~k~Al~~-l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 208 MYAVQGRLEKAEPLCKQALRI-LEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHHhccHHHHHHHHHHHHHH-HHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 666788999999999986553 112222 2444332 333556788889999999999999732 222222 234
Q ss_pred HHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHH
Q 005628 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 230 n~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+.|=.+|+ +.|++++|...++ .|.+++..
T Consensus 287 ~nLa~ly~----------~~GKf~EA~~~~e-----------------------------------------~Al~I~~~ 315 (508)
T KOG1840|consen 287 NNLAVLYY----------KQGKFAEAEEYCE-----------------------------------------RALEIYEK 315 (508)
T ss_pred HHHHHHHh----------ccCChHHHHHHHH-----------------------------------------HHHHHHHH
Confidence 44444555 6666666666653 23333333
Q ss_pred HHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC---CCCCC
Q 005628 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---EVPMN 386 (687)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd 386 (687)
..|.. .|++.+..+-+...|+..+++++|..+++...+. -+.++
T Consensus 316 --~~~~~-------------------------------~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~ 362 (508)
T KOG1840|consen 316 --LLGAS-------------------------------HPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGED 362 (508)
T ss_pred --hhccC-------------------------------hHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcccc
Confidence 11111 1122222222777888889999999888866531 12233
Q ss_pred ----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----C--CCC-CcchHHHHHHHHHhCCChHHHHHHHHHHH----HC
Q 005628 387 ----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----G--INP-RLRSYGPALSVFCNNGDVDKACSVEEHML----EH 451 (687)
Q Consensus 387 ----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g--~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~----~~ 451 (687)
..+|+.|-..|-+.|++++|.++|++.... + ..+ ....++-|-..|-+.+..++|.++|.+-. ..
T Consensus 363 ~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~ 442 (508)
T KOG1840|consen 363 NVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLC 442 (508)
T ss_pred chHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHh
Confidence 358999999999999999999999987643 1 112 23566777788889999999999998743 33
Q ss_pred CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 452 GVY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 452 gv~-pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
|.. |+ ..+|.-|...|...|++++|.++.+...
T Consensus 443 g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 443 GPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred CCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 432 33 4789999999999999999999988776
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0009 Score=73.54 Aligned_cols=219 Identities=8% Similarity=-0.034 Sum_probs=155.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ-------YHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~-------~tyn~ 231 (687)
.....++.+.|.+.++.+.+.. |+ +...+..+...|.+.|++++|++++..+.+.+..++. .+|..
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~--P~-----~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~ 234 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVA--PR-----HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIG 234 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC--CC-----CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4446788899999999985432 11 2367888899999999999999999999987765322 12233
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
++.... +..+.+....++. ++.+. .+ +.-..-.+... +...|+.++|.+++.+.
T Consensus 235 l~~~~~----------~~~~~~~l~~~w~-------~lp~~--~~~~~~~~~~~A~~------l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 235 LMDQAM----------ADQGSEGLKRWWK-------NQSRK--TRHQVALQVAMAEH------LIECDDHDTAQQIILDG 289 (398)
T ss_pred HHHHHH----------HhcCHHHHHHHHH-------hCCHH--HhCCHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 333222 1122233333332 11111 11 33335555566 88999999999999887
Q ss_pred HhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH
Q 005628 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (687)
.+. .||.. .+++.+.+..++.+++.+..+...+.. +-|...+
T Consensus 290 l~~--~~~~~-----------------------------------l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~ 331 (398)
T PRK10747 290 LKR--QYDER-----------------------------------LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLW 331 (398)
T ss_pred Hhc--CCCHH-----------------------------------HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHH
Confidence 763 23321 114455566799999999999998763 3456678
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
.++-..|.+.+++++|.+.|+...+. .|+..+|-.+-..+.+.|+.++|.+++++-.
T Consensus 332 l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 332 STLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 89999999999999999999998875 6999999999999999999999999998754
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.85 E-value=1.5e-05 Score=52.97 Aligned_cols=31 Identities=19% Similarity=0.355 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGI 222 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi 222 (687)
++||++|++|++.|++++|.++|++|++.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999999885
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0021 Score=71.46 Aligned_cols=278 Identities=14% Similarity=0.038 Sum_probs=186.6
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhccc
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G--i~pd~~tyn~Ll~~~~~~~~ 241 (687)
+..+|...|.... .. .+| .+...-+=.+|-..+++++|.++|+..++.. ..-+..+|.++|.-+-+
T Consensus 334 ~~~~A~~~~~klp------~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~--- 402 (638)
T KOG1126|consen 334 NCREALNLFEKLP------SH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD--- 402 (638)
T ss_pred HHHHHHHHHHhhH------Hh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---
Confidence 4557777777752 21 222 2555666688888999999999999998642 23477899999977662
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC-Ccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS-NGH 320 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P-d~~ 320 (687)
+-++..+. +++.+. .-..-.+|-++=++ |.-.++.+.|++.|+.-.+. .| ...
T Consensus 403 -----------~v~Ls~La------q~Li~~-~~~sPesWca~GNc------fSLQkdh~~Aik~f~RAiQl--dp~faY 456 (638)
T KOG1126|consen 403 -----------EVALSYLA------QDLIDT-DPNSPESWCALGNC------FSLQKDHDTAIKCFKRAIQL--DPRFAY 456 (638)
T ss_pred -----------hHHHHHHH------HHHHhh-CCCCcHHHHHhcch------hhhhhHHHHHHHHHHHhhcc--CCccch
Confidence 12222222 233332 11145679999999 99999999999998876653 34 344
Q ss_pred ccchhhHhhccc-------cccCCCcchhcccCCCCChhhhHHH--HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHH
Q 005628 321 MKLNSQLLDGRS-------NLERGPDDQSRKKDWSIDNQDADEI--RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 321 ty~~~~li~g~~-------~~a~~~~~~m~~~g~~pd~~tyn~~--lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn 391 (687)
+|+ +-|.- +.|...| ++.+..|...||+. |--.|.|.++++.|.--|++..+-+. -+.+...
T Consensus 457 ayT----LlGhE~~~~ee~d~a~~~f----r~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~ 527 (638)
T KOG1126|consen 457 AYT----LLGHESIATEEFDKAMKSF----RKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILC 527 (638)
T ss_pred hhh----hcCChhhhhHHHHhHHHHH----HhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHh
Confidence 443 33332 2233233 23455677777762 22457789999999999998876542 3566777
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEA 470 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~ 470 (687)
.+-..+-+.|+.|+|++++++-....-+ |.-+---....+...++.++|+..++++++ +.|+ ...|-.|-..|-+.
T Consensus 528 ~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~ 604 (638)
T KOG1126|consen 528 HIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRL 604 (638)
T ss_pred hhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHH
Confidence 7777888899999999999987654322 222222234445667899999999999987 4565 45677777889999
Q ss_pred CChHHHHHHHHHHHhccCCCChh
Q 005628 471 GKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|+.+.|+.-|.-+.+. .+.++
T Consensus 605 ~~~~~Al~~f~~A~~l--dpkg~ 625 (638)
T KOG1126|consen 605 GNTDLALLHFSWALDL--DPKGA 625 (638)
T ss_pred ccchHHHHhhHHHhcC--CCccc
Confidence 9999998888877776 44444
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00097 Score=76.56 Aligned_cols=239 Identities=9% Similarity=-0.067 Sum_probs=118.5
Q ss_pred cHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcc
Q 005628 190 EQFQLRVELDMCSK-----RGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (687)
Q Consensus 190 ~~~tyn~lI~~~~k-----~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~ 263 (687)
+...|...+.+-.. .+++++|+++|++..+. .|+.. .|..|-.++...... +.....++.++|...+.
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~-g~~~~~~~~~~A~~~~~--- 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQM-GIFDKQNAMIKAKEHAI--- 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHc-CCcccchHHHHHHHHHH---
Confidence 34566666666422 23568999999998854 56543 444443333211100 00112344566666663
Q ss_pred cccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhc
Q 005628 264 MNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSR 343 (687)
Q Consensus 264 ~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~ 343 (687)
+.... +-.+...|..+-.. +...|++++|...|++..+.. |+...
T Consensus 329 ----~Al~l-dP~~~~a~~~lg~~------~~~~g~~~~A~~~~~~Al~l~--P~~~~---------------------- 373 (553)
T PRK12370 329 ----KATEL-DHNNPQALGLLGLI------NTIHSEYIVGSLLFKQANLLS--PISAD---------------------- 373 (553)
T ss_pred ----HHHhc-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--CCCHH----------------------
Confidence 22211 11133334444333 555666777777666655542 33211
Q ss_pred ccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-
Q 005628 344 KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (687)
Q Consensus 344 ~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~- 422 (687)
.|.. +-..|...|++++|...|++..+.... +...+..++..+...|++++|...+++..... .|+.
T Consensus 374 ---------a~~~-lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~ 441 (553)
T PRK12370 374 ---------IKYY-YGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNP 441 (553)
T ss_pred ---------HHHH-HHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCH
Confidence 1112 444556667777777777766654322 11222233334555666777777766655432 2332
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
..+..+-..+...|+.++|...++.+... .|+. ...+.|-..|+..| ++|...++.+.+
T Consensus 442 ~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 442 ILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 23444555566667777777776665432 2232 22333334445555 355555555544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.82 E-value=2.2e-05 Score=52.11 Aligned_cols=29 Identities=31% Similarity=0.620 Sum_probs=13.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
|||+||++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 44444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0016 Score=74.69 Aligned_cols=248 Identities=12% Similarity=0.027 Sum_probs=158.8
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCS---------KRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~---------k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~ 234 (687)
...+|.++|+.-.+ ..|+ ...|..+-.++. ..+++++|...+++..+.. +-+...+..+-.
T Consensus 276 ~~~~A~~~~~~Al~--------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~ 346 (553)
T PRK12370 276 SLQQALKLLTQCVN--------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGL 346 (553)
T ss_pred HHHHHHHHHHHHHh--------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 35688888888743 2232 234444433332 3355899999999988653 224566666655
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
.+. ..|+.++|...|. +..+. .-.+...|..+-.. +...|++++|...+++..+..
T Consensus 347 ~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~G~~~eAi~~~~~Al~l~ 402 (553)
T PRK12370 347 INT----------IHSEYIVGSLLFK-------QANLL-SPISADIKYYYGWN------LFMAGQLEEALQTINECLKLD 402 (553)
T ss_pred HHH----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHhcC
Confidence 666 6789999999995 33332 21134446666666 889999999999999987753
Q ss_pred CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
|+...+ +.. +...+...|++++|.+.+++......+-+...+..+-
T Consensus 403 --P~~~~~-------------------------------~~~-~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la 448 (553)
T PRK12370 403 --PTRAAA-------------------------------GIT-KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQV 448 (553)
T ss_pred --CCChhh-------------------------------HHH-HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence 432211 011 3334556789999999999987654222455677788
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g~ 472 (687)
..+...|+.++|...+..+... .|+.. ..+.+-..|+..| ++|...++.+.+. .-.|...-+..++ |.-.|+
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~--~~~~g~ 522 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLV--LVAHGE 522 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHH--HHHHhh
Confidence 8889999999999999887654 34433 3444555667777 4888877777653 2233333333333 344566
Q ss_pred hHHHHHHHHHHHhc
Q 005628 473 GDRVYYLLHKLRTS 486 (687)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (687)
-+.+..+ +++.+.
T Consensus 523 ~~~~~~~-~~~~~~ 535 (553)
T PRK12370 523 AIAEKMW-NKFKNE 535 (553)
T ss_pred hHHHHHH-HHhhcc
Confidence 6666555 777665
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00038 Score=75.74 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=93.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
+++.+....+++++..++.+.+.. ....-..|..++|+.|-+.|..++++.+++.=...|+-||..|||.||+.+.+.
T Consensus 72 fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~ 151 (429)
T PF10037_consen 72 FVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKK 151 (429)
T ss_pred HHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhc
Confidence 677777777888888888888765 332334555699999999999999999998888889999999999999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
|++..|.+|..+|...+...+..|+..-+.+|.+.
T Consensus 152 ~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 152 GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999998888888888888877777666
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00058 Score=59.45 Aligned_cols=76 Identities=14% Similarity=0.241 Sum_probs=42.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhCC--------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNG--------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g--------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
|.-+...+++.....+|..+++.|+ .|.+.+|+.++.+.++.. ++-..+.++++|...+++|+..||+.+|
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3333344555555555555555555 555555555555554431 2334556777777777777777777777
Q ss_pred HHHHh
Q 005628 465 RVSVE 469 (687)
Q Consensus 465 ~~~~~ 469 (687)
..+.+
T Consensus 112 ~~Llk 116 (120)
T PF08579_consen 112 GSLLK 116 (120)
T ss_pred HHHHH
Confidence 66654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.025 Score=63.67 Aligned_cols=295 Identities=12% Similarity=0.044 Sum_probs=186.0
Q ss_pred HHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005628 158 QKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE-QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (687)
Q Consensus 158 ~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~-~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~ 236 (687)
+.+.+.|+.++|++.++.-.. ..+| ...+-..-..+.+.|+.++|..+|..+.+.+ |+.+.|-..+..+
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~--------~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK--------QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh--------hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHH
Confidence 355689999999999977522 2233 3455666788899999999999999999875 6766666555555
Q ss_pred HhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCCh-hhHHHHHHHHHhc
Q 005628 237 SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRF-DDLDSTFNEKENL 313 (687)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~-~~A~~lf~eM~~~ 313 (687)
..... .......+....+++ ++... .+ +.+-.-.|. +.....| ..+...+..+..+
T Consensus 82 ~g~~~----~~~~~~~~~~~~~y~-------~l~~~--yp~s~~~~rl~L~--------~~~g~~F~~~~~~yl~~~l~K 140 (517)
T PF12569_consen 82 LGLQL----QLSDEDVEKLLELYD-------ELAEK--YPRSDAPRRLPLD--------FLEGDEFKERLDEYLRPQLRK 140 (517)
T ss_pred Hhhhc----ccccccHHHHHHHHH-------HHHHh--CccccchhHhhcc--------cCCHHHHHHHHHHHHHHHHhc
Confidence 41110 001224555566664 33222 11 111111111 2233334 3456667778888
Q ss_pred CCCCCccccc-----------hhhHhhcccccc--CCCcchh-cccCCCCChhhhHHHHH-HHHHhhccHHHHHHHHHHH
Q 005628 314 GQFSNGHMKL-----------NSQLLDGRSNLE--RGPDDQS-RKKDWSIDNQDADEIRL-SEDAKKYAFQRGFEIYEKM 378 (687)
Q Consensus 314 g~~Pd~~ty~-----------~~~li~g~~~~a--~~~~~~m-~~~g~~pd~~tyn~~lI-~~~~k~g~~~~A~~lf~~M 378 (687)
|+.+--...- ...++.++.... ...+..- ....-.|....|...++ ..|-..|+.++|+++.++-
T Consensus 141 gvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 141 GVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred CCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8643221111 112222222110 0011100 01112355545554444 5577899999999999988
Q ss_pred HhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 005628 379 CLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE 457 (687)
Q Consensus 379 ~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~ 457 (687)
.+.. |+ +..|.+-.+.|-+.|++++|.+.++.-..... -|...=+-....+.++|++++|.+++......+..|-.
T Consensus 221 I~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 221 IEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred HhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 8763 55 66888889999999999999999999887754 57888888999999999999999999999877764432
Q ss_pred HHH--------HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 458 PEL--------EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 458 ~ty--------~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+ ...-.+|.+.|++..|++.|..+...
T Consensus 298 ~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 298 NLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 221 34456778899998888777666554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0086 Score=67.39 Aligned_cols=268 Identities=13% Similarity=0.071 Sum_probs=176.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCc
Q 005628 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNV-LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN 278 (687)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~-Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~ 278 (687)
.+...|++++|++.++.-. ...+|...+-- .-..+. +.|+.++|..++. ++.+. +-.|.
T Consensus 13 il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~----------kLg~~~eA~~~y~-------~Li~r-NPdn~ 72 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLL----------KLGRKEEAEKIYR-------ELIDR-NPDNY 72 (517)
T ss_pred HHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHHH-CCCcH
Confidence 3478899999999997643 34456655544 445555 8899999999994 66654 33344
Q ss_pred cchhccccccccccccc-----cCCChhhHHHHHHHHHhcCCCCCccccc--hhhHhhc--cccccCCCcchhcccCCCC
Q 005628 279 GQLDYGSSPMIDKLESN-----SSYRFDDLDSTFNEKENLGQFSNGHMKL--NSQLLDG--RSNLERGPDDQSRKKDWSI 349 (687)
Q Consensus 279 ~tyn~Li~~~~~~~~~~-----~~g~~~~A~~lf~eM~~~g~~Pd~~ty~--~~~li~g--~~~~a~~~~~~m~~~g~~p 349 (687)
--|..|..+ .. .....+....+++++...- |.....- .-..+.| +-..+......+..+|+++
T Consensus 73 ~Yy~~L~~~------~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs 144 (517)
T PF12569_consen 73 DYYRGLEEA------LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS 144 (517)
T ss_pred HHHHHHHHH------HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch
Confidence 446777666 42 2235677888898887654 3332221 0000111 1123334555666777654
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----C----------CCCCHH--HHHHHHHHHHHcCChHHHHHHHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----E----------VPMNEA--SLTAVGRMAMSMGDGDMAFDMVKRM 413 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----g----------i~pd~~--tyn~LI~~~~~~g~~~~A~~l~~~M 413 (687)
+++. |-..|......+-..+++...... + -.|... ++.-|...|-..|+.++|++++++-
T Consensus 145 ---lF~~-lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~a 220 (517)
T PF12569_consen 145 ---LFSN-LKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKA 220 (517)
T ss_pred ---HHHH-HHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3444 556666555556666666665432 1 134443 4455667788899999999999987
Q ss_pred HHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 005628 414 KSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (687)
Q Consensus 414 ~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (687)
.+. .|+ +.-|..--..|-+.|++++|.+.+++....... |-..-+-....+.++|++++|.+++........++..
T Consensus 221 I~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~ 297 (517)
T PF12569_consen 221 IEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLS 297 (517)
T ss_pred Hhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCccc
Confidence 765 466 456777777888999999999999998876543 7788888899999999999999999999887333333
Q ss_pred hHHHHHHHHH
Q 005628 493 STADVIAKWF 502 (687)
Q Consensus 493 ~t~~~I~~~~ 502 (687)
+...+-..||
T Consensus 298 ~L~~mQc~Wf 307 (517)
T PF12569_consen 298 NLNDMQCMWF 307 (517)
T ss_pred CHHHHHHHHH
Confidence 3444433333
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0077 Score=63.91 Aligned_cols=125 Identities=11% Similarity=0.101 Sum_probs=97.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-+-|-...+...|.+++-+... -++-|....+-|-+.|-+.|+-..|++.+.+--.. ++.|+.|..-|-.-|....-
T Consensus 564 ianiye~led~aqaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHH
Confidence 34555556677778877755433 25557888999999999999999999887664333 55677888888888888888
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVS-VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~-~~~g~~~~A~~ll~~M~~~ 486 (687)
.++|...|+...- +.|+..-|..||..| .+.|++.+|+++++....+
T Consensus 642 ~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 642 SEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 8999999987543 789999999998776 5689999999999998877
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00043 Score=60.25 Aligned_cols=78 Identities=8% Similarity=0.051 Sum_probs=68.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcC--------ChHHHHHHHHHHHHcCCCCCcchHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMG--------DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~tyn~LI~~~~~~g--------~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
.|..+...+++.....+|+.++..|+ .|++.+||.++++.++.. ++-+.+.++..|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 55666677999999999999999999 999999999999999853 344678899999999999999999999
Q ss_pred HHHHHhC
Q 005628 429 LSVFCNN 435 (687)
Q Consensus 429 I~~~~~~ 435 (687)
|..+.+.
T Consensus 111 l~~Llkg 117 (120)
T PF08579_consen 111 LGSLLKG 117 (120)
T ss_pred HHHHHHh
Confidence 9988763
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0007 Score=65.98 Aligned_cols=91 Identities=20% Similarity=0.319 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC----------------ChHHHH
Q 005628 384 PMNEASLTAVGRMAMSM-----GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG----------------DVDKAC 442 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~-----g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g----------------~~~~A~ 442 (687)
..|..+|..+|+.|.+. |.++-...-++.|.+.|+.-|+.+|+.||+.+=+.. +-+-|.
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 35677777777777753 677777778888888888888888888888776522 237799
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
+|++.|+..||.||..|+..|++.+.+.+..-
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~ 155 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKSHPM 155 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhccccHHH
Confidence 99999999999999999999999998877543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.008 Score=66.32 Aligned_cols=227 Identities=11% Similarity=-0.024 Sum_probs=148.7
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS- 238 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~- 238 (687)
.-..++.+.|...++.+.+.. |+ +...+..+...+.+.|++++|.+++..+.+.++.+.......-+.++..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~--P~-----~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMA--PR-----HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 346788999999999996542 21 2367889999999999999999999999998765333221222222210
Q ss_pred --cccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCC
Q 005628 239 --AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (687)
Q Consensus 239 --~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~ 315 (687)
.+. .....+....... ...+ ... +...+-.+... +...|+.++|..++++..+..
T Consensus 236 l~~~~------~~~~~~~L~~~~~-------~~p~--~~~~~~~l~~~~a~~------l~~~g~~~~A~~~l~~~l~~~- 293 (409)
T TIGR00540 236 LDEAM------ADEGIDGLLNWWK-------NQPR--HRRHNIALKIALAEH------LIDCDDHDSAQEIIFDGLKKL- 293 (409)
T ss_pred HHHHH------HhcCHHHHHHHHH-------HCCH--HHhCCHHHHHHHHHH------HHHCCChHHHHHHHHHHHhhC-
Confidence 000 0111112222221 1110 001 33345666667 899999999999999988753
Q ss_pred CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHH
Q 005628 316 FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTA 392 (687)
Q Consensus 316 ~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~ 392 (687)
||..... +-.+..-.....++.+.+.+.++...+. .|+. ....+
T Consensus 294 -pd~~~~~------------------------------~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~s 340 (409)
T TIGR00540 294 -GDDRAIS------------------------------LPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRA 340 (409)
T ss_pred -CCcccch------------------------------hHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHH
Confidence 4433210 0010112233446777888888776654 2333 55668
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+-..+.+.|++++|.+.|+........||...+..+-..+.+.|+.++|.++|++-
T Consensus 341 Lg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 341 LGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88889999999999999996444455799999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.018 Score=60.70 Aligned_cols=282 Identities=12% Similarity=-0.005 Sum_probs=188.1
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~ 242 (687)
.|++..|+++...-.+. +..|- ..|-.-..+--+.||.+.|-.+..+.-+.-=.++...+-+.-....
T Consensus 97 eG~~~qAEkl~~rnae~------~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll----- 164 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH------GEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL----- 164 (400)
T ss_pred cCcHHHHHHHHHHhhhc------CcchH-HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH-----
Confidence 47888899888875332 33343 6788888889999999999999999887644566667777777777
Q ss_pred CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 243 ~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
..|+...|..-.+-+ .+|.. .+...-...... |.+.|++.....++..|.+.|+--|.-.-
T Consensus 165 -----~~~d~~aA~~~v~~l----l~~~p----r~~~vlrLa~r~------y~~~g~~~~ll~~l~~L~ka~~l~~~e~~ 225 (400)
T COG3071 165 -----NRRDYPAARENVDQL----LEMTP----RHPEVLRLALRA------YIRLGAWQALLAILPKLRKAGLLSDEEAA 225 (400)
T ss_pred -----hCCCchhHHHHHHHH----HHhCc----CChHHHHHHHHH------HHHhccHHHHHHHHHHHHHccCCChHHHH
Confidence 567777776665411 12221 145556777778 99999999999999999999876554322
Q ss_pred c-hh----hHhhccc--cccCC---Ccchhccc-CCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHH
Q 005628 323 L-NS----QLLDGRS--NLERG---PDDQSRKK-DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 323 ~-~~----~li~g~~--~~a~~---~~~~m~~~-g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn 391 (687)
- .. .+++-.. ..+.. .+.+...+ .-.|.++. + ++.-+.++|+.++|.++..+-.+++..|...+
T Consensus 226 ~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~--~-~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~-- 300 (400)
T COG3071 226 RLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVV--A-YAERLIRLGDHDEAQEIIEDALKRQWDPRLCR-- 300 (400)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHH--H-HHHHHHHcCChHHHHHHHHHHHHhccChhHHH--
Confidence 1 00 1111111 01111 11222111 11233322 2 55678888999999999998888887776222
Q ss_pred HHHHHHHHcCChHHHHHHHHHH-HHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRM-KSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M-~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
.-.+.+-++...=.+..+.- +..+-.| -.+.+|=.-|.+++.+.+|.+.|+...+ ..|+..+|+-+-++|.+.
T Consensus 301 --~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~ 374 (400)
T COG3071 301 --LIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQL 374 (400)
T ss_pred --HHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHc
Confidence 12344556665555555443 3445555 5566677778899999999999996554 568999999999999999
Q ss_pred CChHHHHHHHHHHHhc
Q 005628 471 GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (687)
|+..+|.++.++-...
T Consensus 375 g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 375 GEPEEAEQVRREALLL 390 (400)
T ss_pred CChHHHHHHHHHHHHH
Confidence 9999999988876544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0085 Score=66.12 Aligned_cols=258 Identities=15% Similarity=0.086 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
.+|..+-+.+-..|++.+|+.+|+.|++. +| .+..|-.+-.++. ..|+.+.|.+.|. +-+.
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~----------~~~~~~~a~~~~~------~alq 178 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALV----------TQGDLELAVQCFF------EALQ 178 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHH----------hcCCCcccHHHHH------HHHh
Confidence 68888999999999999999999999874 44 4567888888888 7788888888884 1111
Q ss_pred ccCCCCCccc-hhccccccccccccccCCChhhHHHHHHHHHhcCCCCC-ccccc-hhhHhhccc--cccCCCcchhccc
Q 005628 271 DSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN-GHMKL-NSQLLDGRS--NLERGPDDQSRKK 345 (687)
Q Consensus 271 ~~~g~~d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd-~~ty~-~~~li~g~~--~~a~~~~~~m~~~ 345 (687)
-....-+..+ ...|++ ..|++++|..-+.+-.+. .|. .+.|+ .+.+...-. ..|..-|.+.+
T Consensus 179 lnP~l~ca~s~lgnLlk---------a~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-- 245 (966)
T KOG4626|consen 179 LNPDLYCARSDLGNLLK---------AEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-- 245 (966)
T ss_pred cCcchhhhhcchhHHHH---------hhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh--
Confidence 1100001111 333433 378888888777665543 232 13333 112222211 22222233222
Q ss_pred CCCCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-
Q 005628 346 DWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL- 422 (687)
Q Consensus 346 g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~- 422 (687)
.+.|+- ..|-+ |=+.|...+.+++|...|.+... ..|+ .+.|..|-..|-..|.+|.|++.+++..+. .|+-
T Consensus 246 kldP~f~dAYiN-LGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~ 320 (966)
T KOG4626|consen 246 KLDPNFLDAYIN-LGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFP 320 (966)
T ss_pred cCCCcchHHHhh-HHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCch
Confidence 234442 23444 55666667777777777766554 3454 467777878888899999999999987654 5654
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.|-.++-..|++.+|...+...+.-. .--....+-|-..|...|.+++|..+|..-.+-
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 679999999999999999999998887642 123456677888999999999999999876655
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.013 Score=65.28 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=114.2
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
|...+++++|..+|+++.. .....+.. ..+--..++++ |-..|++.|++++|..
T Consensus 251 y~~~~k~~eAv~ly~~AL~-------------i~e~~~G~------------~h~~va~~l~n-La~ly~~~GKf~EA~~ 304 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALT-------------IREEVFGE------------DHPAVAATLNN-LAVLYYKQGKFAEAEE 304 (508)
T ss_pred HHHhccHHHHHHHHHHHHH-------------HHHHhcCC------------CCHHHHHHHHH-HHHHHhccCChHHHHH
Confidence 7777888888888888765 22222210 00011234555 6678999999998887
Q ss_pred HHHHHHh-----CCCC-CCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCc----chHHHHHHHHHhCCChH
Q 005628 374 IYEKMCL-----DEVP-MNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRL----RSYGPALSVFCNNGDVD 439 (687)
Q Consensus 374 lf~~M~~-----~gi~-pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~----~ty~~lI~~~~~~g~~~ 439 (687)
.+++..+ .|.. |.+. -++.+...|+..+++++|..++..-.+. -..++- -+|+.|=..|-..|+++
T Consensus 305 ~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 305 YCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 7776542 2222 3333 4677888899999999999998865432 122333 57899999999999999
Q ss_pred HHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 440 KACSVEEHMLEH------GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 440 ~A~~l~~~M~~~------gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
+|.++|+..... +..+ .-..++-|-..|.+.+..++|.++|.+-.
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 999999987653 1222 24567788888899999999999988754
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0019 Score=70.29 Aligned_cols=131 Identities=13% Similarity=0.146 Sum_probs=107.7
Q ss_pred HHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 374 IYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 374 lf~~M~~---~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
++..|.. .+.+.+.+...++++.+....+++++..++...... ...--..|..++|..|.+.|..+.+.+++..=
T Consensus 50 ~~~~l~~k~~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~ 129 (429)
T PF10037_consen 50 LYSELDKKFERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNR 129 (429)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhCh
Confidence 5555543 355678889999999999999999999999988765 23233456679999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH-HHHHHcC
Q 005628 449 LEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV-IAKWFNS 504 (687)
Q Consensus 449 ~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~-I~~~~~~ 504 (687)
...|+-||..|||.||+.+.+.|++..|.++..+|.....--.|.|+.. +...++-
T Consensus 130 ~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 130 LQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998744555667766 5544443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.18 Score=54.34 Aligned_cols=261 Identities=11% Similarity=0.063 Sum_probs=180.3
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCC-C-CCHHHHHHHHHHHHhc
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMC-SKRGDVMGAIRLYDKAQREGI-K-LGQYHYNVLLYLCSSA 239 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~-~k~g~~~~A~~lf~~M~~~Gi-~-pd~~tyn~Ll~~~~~~ 239 (687)
....+++..-.+.....|. +-+ .-+-+.+.++ -...|+++|+.+|+++.+..- + -|..||+.+|..--.
T Consensus 240 l~q~~e~~~k~e~l~~~gf------~~~-~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~- 311 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGF------PNS-MYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND- 311 (559)
T ss_pred HHHHHHHHHHHHHHHhccC------Ccc-HHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh-
Confidence 3345566666665544332 222 2333333333 345699999999999997632 2 478899999876552
Q ss_pred ccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
++.-.--|..++. +. -..|+.++-+- |+-.++.+.|...|+.-.+.. |
T Consensus 312 --------~skLs~LA~~v~~--------------idKyR~ETCCiIaNY------YSlr~eHEKAv~YFkRALkLN--p 361 (559)
T KOG1155|consen 312 --------KSKLSYLAQNVSN--------------IDKYRPETCCIIANY------YSLRSEHEKAVMYFKRALKLN--P 361 (559)
T ss_pred --------hHHHHHHHHHHHH--------------hccCCccceeeehhH------HHHHHhHHHHHHHHHHHHhcC--c
Confidence 1222223444442 22 33455555566 777888899999998776542 2
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~ 397 (687)
.. ..-.++|=+-|..-.....|.+-|+...+-. +.|--.|=.|=.+|
T Consensus 362 ~~--------------------------------~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 362 KY--------------------------------LSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ch--------------------------------hHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 11 1112324477888888888999998887653 45778899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 398 MSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
.-.+...-|+-.|++-.. ++| |.+.|.+|=.+|.+.+++++|.+.|......|-. +...|..|-+.|-+.++.++|
T Consensus 409 eim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHH
Confidence 999999999999987654 455 7799999999999999999999999999877633 558899999999999999999
Q ss_pred HHHHHHHHhcc--CC-CChhHHHH
Q 005628 477 YYLLHKLRTSV--RK-VSPSTADV 497 (687)
Q Consensus 477 ~~ll~~M~~~~--~g-~~p~t~~~ 497 (687)
...|.+-.+.. .| +.|.|..+
T Consensus 486 a~~yek~v~~~~~eg~~~~~t~ka 509 (559)
T KOG1155|consen 486 AQYYEKYVEVSELEGEIDDETIKA 509 (559)
T ss_pred HHHHHHHHHHHHhhcccchHHHHH
Confidence 99888776531 12 55555433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.012 Score=62.43 Aligned_cols=285 Identities=11% Similarity=0.076 Sum_probs=172.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK-RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k-~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~ 237 (687)
.+.+.++.+.|.+++.-+..+..+... ...-|...--|.+ ..++.+|...-+..... .-||.---.--
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~s-----aaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~nk 496 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTAS-----AAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTNK 496 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhH-----HHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhcC
Confidence 345677888888888777543322211 1111222222233 34678888777766532 22332211111
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF 316 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~ 316 (687)
..-+ .-.|++++|.+.+. |-..+ +-. ....||+-+.+ -..|++++|+..|-.+...=..
T Consensus 497 gn~~-----f~ngd~dka~~~yk-------eal~n-dasc~ealfniglt~-------e~~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 497 GNIA-----FANGDLDKAAEFYK-------EALNN-DASCTEALFNIGLTA-------EALGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred Ccee-----eecCcHHHHHHHHH-------HHHcC-chHHHHHHHHhcccH-------HHhcCHHHHHHHHHHHHHHHHh
Confidence 0000 03688888888884 33322 111 12226666554 5678888888888765432111
Q ss_pred CCccccchhhHhhccc---cccCCCcchhcccCCCCChh-hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005628 317 SNGHMKLNSQLLDGRS---NLERGPDDQSRKKDWSIDNQ-DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (687)
Q Consensus 317 Pd~~ty~~~~li~g~~---~~a~~~~~~m~~~g~~pd~~-tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~ 392 (687)
--.+.| .+.+-|. +.+..+---|....+.|+-. ..+. |-+.|-+.|+-..|++.+-+--. -++-|..|...
T Consensus 557 n~evl~---qianiye~led~aqaie~~~q~~slip~dp~ilsk-l~dlydqegdksqafq~~ydsyr-yfp~nie~iew 631 (840)
T KOG2003|consen 557 NAEVLV---QIANIYELLEDPAQAIELLMQANSLIPNDPAILSK-LADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEW 631 (840)
T ss_pred hHHHHH---HHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHH-HHHHhhcccchhhhhhhhhhccc-ccCcchHHHHH
Confidence 111122 2222222 22222222344445556544 4444 88899999999999987654332 35678889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH-hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC-NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG 471 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~-~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g 471 (687)
|-.-|....-+++|+..|+... =+.|+..-|-.+|..|. +.|+..+|+++++..-.+ +.-|.....-|++.+...|
T Consensus 632 l~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 9999999999999999998643 37899999999998665 579999999999998654 7778888888998887777
Q ss_pred ChHHHHHHHHHH
Q 005628 472 KGDRVYYLLHKL 483 (687)
Q Consensus 472 ~~~~A~~ll~~M 483 (687)
.. ++.++-+++
T Consensus 709 l~-d~key~~kl 719 (840)
T KOG2003|consen 709 LK-DAKEYADKL 719 (840)
T ss_pred ch-hHHHHHHHH
Confidence 54 344444443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=61.46 Aligned_cols=87 Identities=14% Similarity=0.084 Sum_probs=70.3
Q ss_pred hhhhHHHHHHHHH-----hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------------CChHHHHHH
Q 005628 351 NQDADEIRLSEDA-----KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------------GDGDMAFDM 409 (687)
Q Consensus 351 ~~tyn~~lI~~~~-----k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~----------------g~~~~A~~l 409 (687)
..+|.. +|+.|. +.|.++-...-+..|.+-|+.-|..+|+.||+.+=+. .+-+-|+++
T Consensus 47 K~~F~~-~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 47 KATFLE-AVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred HHHHHH-HHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 334444 555555 4477888888899999999999999999999976552 234569999
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhCCCh
Q 005628 410 VKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 410 ~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (687)
+++|...|+.||..|+..|++.|.+.+..
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccHH
Confidence 99999999999999999999999777653
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0049 Score=64.44 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=90.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
.|..|.+.++++.|.+.++.|.+.. .| .+..-|..++.. ...+.+|+.+|+++... +.++..+.|.+..+..
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 6788889999999999999998753 34 445556665554 33688999999998654 5678888888888999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (687)
..|++++|.+++.+..+..- -|..+..-+|-+....|+. +.+.+++.+++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 99999999999988766542 2455666677777777877 6788899998876
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.15 Score=52.56 Aligned_cols=263 Identities=12% Similarity=0.043 Sum_probs=151.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
-+...|..+.|..+-..+.+. |+.-...-....-.|-.-|...|-+|.|..+|..+.+.|.. -.-..-.|+..|-
T Consensus 78 LfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ- 152 (389)
T COG2956 78 LFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQ- 152 (389)
T ss_pred HHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHH-
Confidence 455788999999999998532 22211111233444556678889999999999999876532 1234456777777
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCC-Cc--cc-hhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NN--GQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~--~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
....+++|.++-. ++....+-. ++ .- |.-|-.. +....+++.|..++..-.+.
T Consensus 153 ---------~treW~KAId~A~-------~L~k~~~q~~~~eIAqfyCELAq~------~~~~~~~d~A~~~l~kAlqa- 209 (389)
T COG2956 153 ---------ATREWEKAIDVAE-------RLVKLGGQTYRVEIAQFYCELAQQ------ALASSDVDRARELLKKALQA- 209 (389)
T ss_pred ---------HhhHHHHHHHHHH-------HHHHcCCccchhHHHHHHHHHHHH------HhhhhhHHHHHHHHHHHHhh-
Confidence 6667777777663 232221111 00 00 2222222 33455666666666554443
Q ss_pred CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
.|+.+--+ .++=+.+...|+++.|.+.++...+.+..--..+...|.
T Consensus 210 -~~~cvRAs--------------------------------i~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~ 256 (389)
T COG2956 210 -DKKCVRAS--------------------------------IILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLY 256 (389)
T ss_pred -Cccceehh--------------------------------hhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 13322221 222355667788888888888887776544456677888
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cC
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE---AG 471 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~---~g 471 (687)
.+|.+.|+.++....+..+.+..-.++. -..+-.---...-.+.|.....+-.. -.|+...+..||+.-.. .|
T Consensus 257 ~~Y~~lg~~~~~~~fL~~~~~~~~g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~--r~Pt~~gf~rl~~~~l~daeeg 332 (389)
T COG2956 257 ECYAQLGKPAEGLNFLRRAMETNTGADA--ELMLADLIELQEGIDAAQAYLTRQLR--RKPTMRGFHRLMDYHLADAEEG 332 (389)
T ss_pred HHHHHhCCHHHHHHHHHHHHHccCCccH--HHHHHHHHHHhhChHHHHHHHHHHHh--hCCcHHHHHHHHHhhhcccccc
Confidence 8888888888888888877765322222 12221111122223444444333332 24888888888876633 34
Q ss_pred ChHHHHHHHHHHHhc
Q 005628 472 KGDRVYYLLHKLRTS 486 (687)
Q Consensus 472 ~~~~A~~ll~~M~~~ 486 (687)
...+-..+++.|...
T Consensus 333 ~~k~sL~~lr~mvge 347 (389)
T COG2956 333 RAKESLDLLRDMVGE 347 (389)
T ss_pred chhhhHHHHHHHHHH
Confidence 455556666666655
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.032 Score=60.61 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=98.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
|+..+...++++.|.++|+++.+.. |++ ...|++.+...++-.+|.+++++.... .+-|......-...|.+.++
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 4566667789999999999999875 654 445888888889999999999988854 22244445555567889999
Q ss_pred hHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.|.++.+++.+ +.|+. .+|..|..+|.+.|+++.|+..++.|.-.
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 9999999999987 45665 59999999999999999999999877644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.057 Score=55.55 Aligned_cols=244 Identities=11% Similarity=-0.003 Sum_probs=166.9
Q ss_pred CCCCCCCCCCcHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhh
Q 005628 180 GSKKSKKDRSEQFQL-RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDT 258 (687)
Q Consensus 180 g~~~~~g~~P~~~ty-n~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~l 258 (687)
+.....++.-| +=| +.+=.+|-+-|-+.+|.+-|..-... .|-+.||--|-+.|. +..+.+.|+.+
T Consensus 212 ~~s~~~~~~~d-wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~----------ridQP~~AL~~ 278 (478)
T KOG1129|consen 212 KPSGSTGCTLD-WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQ----------RIDQPERALLV 278 (478)
T ss_pred cccccccchHh-HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHH----------HhccHHHHHHH
Confidence 33334444444 334 55667889999999999999887765 466778888889999 77888999999
Q ss_pred hhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCC
Q 005628 259 FEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGP 338 (687)
Q Consensus 259 f~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~ 338 (687)
|. +-.+ .++-.|||-.=+.- .+-..++.++|.+++++-.+.. |+.+-
T Consensus 279 ~~-------~gld--~fP~~VT~l~g~AR-----i~eam~~~~~a~~lYk~vlk~~--~~nvE----------------- 325 (478)
T KOG1129|consen 279 IG-------EGLD--SFPFDVTYLLGQAR-----IHEAMEQQEDALQLYKLVLKLH--PINVE----------------- 325 (478)
T ss_pred Hh-------hhhh--cCCchhhhhhhhHH-----HHHHHHhHHHHHHHHHHHHhcC--Cccce-----------------
Confidence 85 2211 12234454222111 1445667788888888766532 11110
Q ss_pred cchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 339 DDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 339 ~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
.. +++-.+|.-.++++-|+..|+.+.+-|+. +...|+.+--+|.-.+++|.++--|..-...--
T Consensus 326 --------------ai-Acia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat 389 (478)
T KOG1129|consen 326 --------------AI-ACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT 389 (478)
T ss_pred --------------ee-eeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc
Confidence 00 11445677788999999999999999976 556677777777778999999988887765533
Q ss_pred CCCcc--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 419 NPRLR--SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~--ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+.. .|-.|=....-.||+..|.+.|+-...+.-. +...||-|--.-.+.|++++|..+++.-.+.
T Consensus 390 ~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 390 QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred CcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 34432 3444444455679999999999988765432 4567777766678999999999999987766
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.094 Score=55.13 Aligned_cols=218 Identities=11% Similarity=-0.041 Sum_probs=139.9
Q ss_pred cCCHHHHHHHHHHHHHc-CCCCCH--HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccc
Q 005628 204 RGDVMGAIRLYDKAQRE-GIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ 280 (687)
Q Consensus 204 ~g~~~~A~~lf~~M~~~-Gi~pd~--~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~t 280 (687)
.+..+.++.-+.++... .+.|+. ..|..+=..|. ..|+.++|...|. +.... .-.+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~----------~~g~~~~A~~~~~-------~Al~l-~P~~~~a 100 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYD----------SLGLRALARNDFS-------QALAL-RPDMADA 100 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHHHc-CCCCHHH
Confidence 35567788888888753 233332 33444444555 6788999998885 33221 2225556
Q ss_pred hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHH
Q 005628 281 LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLS 360 (687)
Q Consensus 281 yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~ 360 (687)
|+.+-.. +...|++++|...|+...+. .|+. ...|.. +-.
T Consensus 101 ~~~lg~~------~~~~g~~~~A~~~~~~Al~l--~P~~-------------------------------~~a~~~-lg~ 140 (296)
T PRK11189 101 YNYLGIY------LTQAGNFDAAYEAFDSVLEL--DPTY-------------------------------NYAYLN-RGI 140 (296)
T ss_pred HHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHH
Confidence 8887777 99999999999999887764 3442 122334 556
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
.+...|++++|.+.|+...+.. |+..........+...++.++|...|...... ..|+...+ .+. ....|+..+
T Consensus 141 ~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~~~--~~~lg~~~~ 214 (296)
T PRK11189 141 ALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-NIV--EFYLGKISE 214 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-HHH--HHHccCCCH
Confidence 6778899999999999988753 43322222222334567899999999765433 33443322 222 233566655
Q ss_pred HHHHHHHHHHC---CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 441 ACSVEEHMLEH---GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 441 A~~l~~~M~~~---gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+ +.++.+.+. .+ .| ....|..|-..+.+.|+.++|...|++-...
T Consensus 215 ~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 215 E-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred H-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4 355555432 11 11 2357888999999999999999999998876
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.25 Score=52.42 Aligned_cols=244 Identities=14% Similarity=0.030 Sum_probs=143.6
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccC
Q 005628 196 VELDMCSK--RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (687)
Q Consensus 196 ~lI~~~~k--~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~ 273 (687)
.++.+.-+ .|++..|.++..+-.+.+-.| +.+.++.+-+. + ..|+.+++-..+. +..+..
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e~p---~l~~l~aA~AA-~-------qrgd~~~an~yL~-------eaae~~ 148 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP---VLAYLLAAEAA-Q-------QRGDEDRANRYLA-------EAAELA 148 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCcch---HHHHHHHHHHH-H-------hcccHHHHHHHHH-------HHhccC
Confidence 34444433 478888888888877766544 34444444331 1 5677777776663 222211
Q ss_pred CCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhh
Q 005628 274 DMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (687)
Q Consensus 274 g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t 353 (687)
|-++...+=+.-.- ....|+...|..-.++..+.+-.+.. .
T Consensus 149 ~~~~l~v~ltrarl------ll~~~d~~aA~~~v~~ll~~~pr~~~---------------------------------v 189 (400)
T COG3071 149 GDDTLAVELTRARL------LLNRRDYPAARENVDQLLEMTPRHPE---------------------------------V 189 (400)
T ss_pred CCchHHHHHHHHHH------HHhCCCchhHHHHHHHHHHhCcCChH---------------------------------H
Confidence 11111112222223 55667777777666666554322111 1
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-------ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-------~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
. .+....|.+.|++.....++.+|.+.|+--|+ .+|+.+++-....+..+.-...++..... .+-+...-.
T Consensus 190 l-rLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~ 267 (400)
T COG3071 190 L-RLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVV 267 (400)
T ss_pred H-HHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHH
Confidence 1 23678888999999999999999888876543 46777777666655555555555554433 333445555
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCC------------------------------HHHHHHHHHHHHhcCChHHH
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPE------------------------------EPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd------------------------------~~ty~~Li~~~~~~g~~~~A 476 (687)
+++.-+.++|+.++|.++.++-.+++..|+ .-.+.+|=.-|.+.+.+.+|
T Consensus 268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence 666677777777777777766655544333 24455666667777777777
Q ss_pred HHHHHHHHhccCCCChhHHHHHHH
Q 005628 477 YYLLHKLRTSVRKVSPSTADVIAK 500 (687)
Q Consensus 477 ~~ll~~M~~~~~g~~p~t~~~I~~ 500 (687)
...|+.-.+. .++.++|+.+..
T Consensus 348 ~~~leaAl~~--~~s~~~~~~la~ 369 (400)
T COG3071 348 SEALEAALKL--RPSASDYAELAD 369 (400)
T ss_pred HHHHHHHHhc--CCChhhHHHHHH
Confidence 7777766555 566666666433
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.075 Score=53.51 Aligned_cols=160 Identities=13% Similarity=0.042 Sum_probs=112.3
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..... |+.... ...+.. +-..|.+.|++++|..
T Consensus 43 ~~~~~~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-la~~~~~~~~~~~A~~ 91 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALESRY--PFSPYA----------------------------EQAQLD-LAYAYYKSGDYAEAIA 91 (235)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCchhH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 778899999999999876642 332110 011222 5577888999999999
Q ss_pred HHHHHHhCCCCCCHH--HHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCcc-hHH----------------
Q 005628 374 IYEKMCLDEVPMNEA--SLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINPRLR-SYG---------------- 426 (687)
Q Consensus 374 lf~~M~~~gi~pd~~--tyn~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~Pd~~-ty~---------------- 426 (687)
.|+++.+........ ++..+-..+... |+.++|.+.|+.+... .|+.. .+.
T Consensus 92 ~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~~~~~~~~ 169 (235)
T TIGR03302 92 AADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLRNRLAGKE 169 (235)
T ss_pred HHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHHHHHHHHH
Confidence 999998754322222 333333344433 7789999999998765 24432 111
Q ss_pred -HHHHHHHhCCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 427 -PALSVFCNNGDVDKACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 427 -~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+-..+.+.|+.++|...++...+.. -......+..+...+.+.|+.++|..+++.+..+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 23456778899999999999988763 1224578889999999999999999999998876
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.31 Score=52.24 Aligned_cols=229 Identities=11% Similarity=-0.029 Sum_probs=129.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc
Q 005628 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
.+...|++++|.+++++..... +-|...++. ...+...+ ...+..+.+...+. . .. ...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~------~~~~~~~~~~~~l~-------~-~~--~~~~~~ 113 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLG------DFSGMRDHVARVLP-------L-WA--PENPDY 113 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhc------ccccCchhHHHHHh-------c-cC--cCCCCc
Confidence 4566789999999999887652 233334442 11221100 03455555666553 1 10 111222
Q ss_pred c--hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHH
Q 005628 280 Q--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (687)
Q Consensus 280 t--yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (687)
. +..+-.. +...|++++|...+++..+.. |+..... ..
T Consensus 114 ~~~~~~~a~~------~~~~G~~~~A~~~~~~al~~~--p~~~~~~-------------------------------~~- 153 (355)
T cd05804 114 WYLLGMLAFG------LEEAGQYDRAEEAARRALELN--PDDAWAV-------------------------------HA- 153 (355)
T ss_pred HHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhC--CCCcHHH-------------------------------HH-
Confidence 2 2233334 678899999999999988754 5543221 12
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCcchH-H--HHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-G--PALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-~--~lI~ 430 (687)
+-..|...|++++|...+++...... .|+. ..|-.+...+...|++++|..++++...... .+..... + .++.
T Consensus 154 la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (355)
T cd05804 154 VAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLW 233 (355)
T ss_pred HHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHH
Confidence 55677788999999999988776432 2333 3456788888889999999999988753321 1112111 1 3334
Q ss_pred HHHhCCChHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGDVDKACSV--EEHMLEHGV--YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~~~~A~~l--~~~M~~~gv--~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-+-..|....+.+. ......... ............++...|+.++|..++..+...
T Consensus 234 ~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~ 293 (355)
T cd05804 234 RLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR 293 (355)
T ss_pred HHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 44444544433333 211111111 111122235666778888899999999888764
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.29 Score=56.74 Aligned_cols=298 Identities=12% Similarity=0.033 Sum_probs=165.8
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.+++..|.-.|..-++.....-. ..|+ =+..|-+.|+...|+.-|.+|....-+.|..-+-.+|...++
T Consensus 216 ls~~~~~i~qA~~cy~rAI~~~p~n~~------~~~e-rs~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~ 288 (895)
T KOG2076|consen 216 LSEQLGNINQARYCYSRAIQANPSNWE------LIYE-RSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAH 288 (895)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcchH------HHHH-HHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 344556666677777666443211111 2222 345667778888888888888764322233333444443331
Q ss_pred cccCCcccCCCCchhhhhhhhhhccccccccccc-CCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~-~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
. +-..+..+.|...+. .-... .+....-.+|++... +.+...++.|......+..+...|
T Consensus 289 ~------~~~~~~~e~a~~~le-------~~~s~~~~~~~~ed~ni~ael------~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 289 Y------FITHNERERAAKALE-------GALSKEKDEASLEDLNILAEL------FLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred H------HHHhhHHHHHHHHHH-------HHHhhccccccccHHHHHHHH------HHHhHHHHHhhHHHHHHhccccCC
Confidence 1 003445577777774 22111 011133447888877 899999999999999888844444
Q ss_pred Ccc----------------------ccchh--hHhhccc-----cccCCCcchhcccCCCC--ChhhhHHHHHHHHHhhc
Q 005628 318 NGH----------------------MKLNS--QLLDGRS-----NLERGPDDQSRKKDWSI--DNQDADEIRLSEDAKKY 366 (687)
Q Consensus 318 d~~----------------------ty~~~--~li~g~~-----~~a~~~~~~m~~~g~~p--d~~tyn~~lI~~~~k~g 366 (687)
|.. +|... .+.-|+. ....-+.+-.....+.| +..-|-. +.++|-..|
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d-~a~al~~~~ 428 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLD-LADALTNIG 428 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHH-HHHHHHhcc
Confidence 432 22200 1111111 01111222233333222 2233444 667777788
Q ss_pred cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHH
Q 005628 367 AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
.+.+|+.+|..+...-.--+.+.|--+-++|-..|..++|.+.++..... .|+- -.--+|-.-+-+.|+.++|.+.+
T Consensus 429 ~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL 506 (895)
T KOG2076|consen 429 KYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETL 506 (895)
T ss_pred cHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHH
Confidence 88888888888777655556777777777777788888888887776654 2322 22223334456678888888777
Q ss_pred HHHH--------HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 446 EHML--------EHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 446 ~~M~--------~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
+.|. ..+..|+...---..+.|...|+.++-...-..|.+
T Consensus 507 ~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 507 EQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred hcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 7753 223445555555555666667776665544444443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.089 Score=54.21 Aligned_cols=154 Identities=8% Similarity=-0.041 Sum_probs=111.5
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
|-+.|.+.+|.+.|+.-.+.--.||.+.+ |-..|.+..+++.|+.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~~~dTfll-----------------------------------LskvY~ridQP~~AL~ 277 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFPHPDTFLL-----------------------------------LSKVYQRIDQPERALL 277 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCCchhHHHH-----------------------------------HHHHHHHhccHHHHHH
Confidence 77788888888877765554333332222 5678888888999998
Q ss_pred HHHHHHhCCCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 374 IYEKMCLDEVPMNEASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 374 lf~~M~~~gi~pd~~ty-n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
+|.+-.+. .|-.+|| .-+.+.+-..++.++|.++++...+.. .-++....++-.+|.-.++.|.|+..+..+...|
T Consensus 278 ~~~~gld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG 354 (478)
T KOG1129|consen 278 VIGEGLDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG 354 (478)
T ss_pred HHhhhhhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc
Confidence 88876653 3544554 556667777888899999988876652 2466666777778888889999999999999888
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 453 VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+. +...|+-+--+|.-.+++|-++--|.+-...
T Consensus 355 ~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 355 AQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred CC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 76 5566766666777788888877777765554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.033 Score=58.30 Aligned_cols=129 Identities=14% Similarity=0.136 Sum_probs=95.1
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----C
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~ 435 (687)
..+...|++++|+++++.- -+.-.....+..|.+.+++|.|.+.++.|.+.. .|. +-.-|..++.. .
T Consensus 110 ~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~ 180 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGG 180 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCc
Confidence 4567789999999988642 456777888999999999999999999998753 343 33344444433 3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-Chh-HHHHHHH
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPS-TADVIAK 500 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~-t~~~I~~ 500 (687)
..+.+|+.+|+++.+. ..++..+.|.+.-++...|++++|..++.+-... .+ .|+ ..|.|..
T Consensus 181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPNDPDTLANLIVC 244 (290)
T ss_dssp TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCCHHHHHHHHHH
Confidence 4799999999998665 6789999999999999999999999999997665 32 234 3565443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.21 Score=57.85 Aligned_cols=84 Identities=10% Similarity=0.083 Sum_probs=57.0
Q ss_pred hHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 005628 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL-GQYHYNVLLYL 235 (687)
Q Consensus 157 ~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p-d~~tyn~Ll~~ 235 (687)
|...++ |+.++|.+++.+.+.+.. -+...|-+|=..|-+.|+.++++..+ |...-+.| |..-|-.+-..
T Consensus 147 N~lfar-g~~eeA~~i~~EvIkqdp-------~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladl 216 (895)
T KOG2076|consen 147 NNLFAR-GDLEEAEEILMEVIKQDP-------RNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADL 216 (895)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhCc-------cchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHH
Confidence 334445 999999999999976532 23378999999999999999998766 33333444 34455555444
Q ss_pred HHhcccCCcccCCCCchhhhhhhhh
Q 005628 236 CSSAAVGVVKPAKSGSGMRTLDTFE 260 (687)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~lf~ 260 (687)
.. ..|.+++|.-.|.
T Consensus 217 s~----------~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 217 SE----------QLGNINQARYCYS 231 (895)
T ss_pred HH----------hcccHHHHHHHHH
Confidence 44 5566777766664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.078 Score=59.40 Aligned_cols=248 Identities=12% Similarity=-0.002 Sum_probs=155.6
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDV-MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~-~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
+..+.++|.++|+........ ..-++-.|.+++=.+-+.=.+ -.|..+.+.+ +-.+.||-++=+.|+
T Consensus 365 El~~Y~~a~~~F~~~r~~~p~----rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~-----~~sPesWca~GNcfS--- 432 (638)
T KOG1126|consen 365 ELIEYDQAERIFSLVRRIEPY----RVKGMEIYSTTLWHLQDEVALSYLAQDLIDTD-----PNSPESWCALGNCFS--- 432 (638)
T ss_pred HHHHHHHHHHHHHHHHhhccc----cccchhHHHHHHHHHHhhHHHHHHHHHHHhhC-----CCCcHHHHHhcchhh---
Confidence 456788999999998543221 233457888887655332111 1223333332 335678888888888
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
-.++.+.|+..|. +-. .++ ..++|+.+=+- +.....+|.|..-|+.- +..|
T Consensus 433 -------LQkdh~~Aik~f~------RAi----Qldp~faYayTLlGhE------~~~~ee~d~a~~~fr~A----l~~~ 485 (638)
T KOG1126|consen 433 -------LQKDHDTAIKCFK------RAI----QLDPRFAYAYTLLGHE------SIATEEFDKAMKSFRKA----LGVD 485 (638)
T ss_pred -------hhhHHHHHHHHHH------Hhh----ccCCccchhhhhcCCh------hhhhHHHHhHHHHHHhh----hcCC
Confidence 6777888888885 111 222 34445555444 78888888888888643 4567
Q ss_pred ccccchhhHhhccc----cccCCCcchhc---ccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHH
Q 005628 319 GHMKLNSQLLDGRS----NLERGPDDQSR---KKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 319 ~~ty~~~~li~g~~----~~a~~~~~~m~---~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn 391 (687)
...|+ ..-|+. +..+.-+.++. ...+.|...+.-..+-..+-+.|+.|+|+++|++...-..+ |+.+--
T Consensus 486 ~rhYn---AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~ 561 (638)
T KOG1126|consen 486 PRHYN---AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKY 561 (638)
T ss_pred chhhH---HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHH
Confidence 77885 333333 11111122211 12244543333233556778899999999999998765432 333333
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
-.+..+...++.++|+..|+++++. .|+. ..|-.+-..|-+.|+.+.|..-|--|.+..-+
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 3455666789999999999999875 4554 56677777888999999999888877664433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.063 Score=55.96 Aligned_cols=130 Identities=9% Similarity=0.025 Sum_probs=101.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (687)
+|-. ++...-+.+.++.|..+|.+..+.+ +..++....++|.-+ ..++.+.|..+|+...+. +.-+..-|..-|+.
T Consensus 3 v~i~-~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 3 VWIQ-YMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHH-HHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4555 7788888899999999999998654 345555555555433 356777799999998876 55577788999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEE---PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~---~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+.|+.+.|..+|+..... +.++. ..|...|+.=.+.|+++.+..+.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999876 33332 49999999999999999999999999987
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.55 Score=55.05 Aligned_cols=341 Identities=13% Similarity=0.026 Sum_probs=204.7
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHH-----HHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE---GIKLGQY-----HYN 230 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~---Gi~pd~~-----tyn 230 (687)
.+-+.++...++.+|......= ....+. +.....|.+-.-.-..|++..|...|+..... -..+|.. |--
T Consensus 422 ql~e~~d~~~sL~~~~~A~d~L-~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 422 QLLEQTDPWASLDAYGNALDIL-ESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHhcChHHHHHHHHHHHHHH-HHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 4445556555566555432100 011122 33368888888888999999999999998754 2334442 111
Q ss_pred HHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccC-------CChhhH
Q 005628 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSS-------YRFDDL 303 (687)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~-------g~~~~A 303 (687)
-.|..|.. ..++.+.|..++. ++... |-.-|++ |.+. +.+.+|
T Consensus 500 YNlarl~E---------~l~~~~~A~e~Yk-------~Ilke--------hp~YId~------ylRl~~ma~~k~~~~ea 549 (1018)
T KOG2002|consen 500 YNLARLLE---------ELHDTEVAEEMYK-------SILKE--------HPGYIDA------YLRLGCMARDKNNLYEA 549 (1018)
T ss_pred HHHHHHHH---------hhhhhhHHHHHHH-------HHHHH--------CchhHHH------HHHhhHHHHhccCcHHH
Confidence 12222321 3456777777774 22111 2333444 3333 456677
Q ss_pred HHHHHHHHh-cCCCCCccccc-hhhHhhccccccCCCcchhcccCC-CCChhhhHHHHHHHHH------------hhccH
Q 005628 304 DSTFNEKEN-LGQFSNGHMKL-NSQLLDGRSNLERGPDDQSRKKDW-SIDNQDADEIRLSEDA------------KKYAF 368 (687)
Q Consensus 304 ~~lf~eM~~-~g~~Pd~~ty~-~~~li~g~~~~a~~~~~~m~~~g~-~pd~~tyn~~lI~~~~------------k~g~~ 368 (687)
..++.+... ..-.|++.+|- +-.+-.--...|..-|..+..+-. .+|.++.-+ |=+.|. ..+..
T Consensus 550 ~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Yslia-LGN~~~~~l~~~~rn~ek~kk~~ 628 (1018)
T KOG2002|consen 550 SLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIA-LGNVYIQALHNPSRNPEKEKKHQ 628 (1018)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHH-hhHHHHHHhcccccChHHHHHHH
Confidence 777776544 44667776663 000001111334443333333211 134332211 112111 33466
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 369 QRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 369 ~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
++|+++|.+..... +-|...-|-+--.++..|++.+|.++|.+..+... -+.-+|-.+-++|...|++..|.++|+.-
T Consensus 629 ~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~ 706 (1018)
T KOG2002|consen 629 EKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENC 706 (1018)
T ss_pred HHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999887654 45777788888889999999999999999998753 34456778899999999999999999976
Q ss_pred HHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHcCHHHHHhhccc------chhhH
Q 005628 449 LEH-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLGKKK------WNESL 519 (687)
Q Consensus 449 ~~~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~~~~------~~~~~ 519 (687)
.+. .-.-+..+...|-+++-++|.+.+|.+.+-.-... .|... -+|+....++........... .-...
T Consensus 707 lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~--~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~ 784 (1018)
T KOG2002|consen 707 LKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL--APSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKE 784 (1018)
T ss_pred HHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 554 55567888899999999999999999987776665 44444 355533333333222222110 11245
Q ss_pred HHHHhhhcCCcccccccCCCC
Q 005628 520 IKDTMENKGGGWHGLGWLGKG 540 (687)
Q Consensus 520 v~ea~~~~g~~~~~M~~~g~~ 540 (687)
+++|++ +|.+|...+-.
T Consensus 785 le~a~r----~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 785 LEEARR----LFTELSKNGDK 801 (1018)
T ss_pred HHHHHH----HHHHHHhcCCC
Confidence 667777 88888766655
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.12 Score=47.02 Aligned_cols=89 Identities=12% Similarity=0.160 Sum_probs=40.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+.+.|++++|.+.|+.....+ +.+...|..+-..+.+.|++++|..+++.....+ ..+...|..+-..|...|+.+
T Consensus 25 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~ 102 (135)
T TIGR02552 25 YNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE 102 (135)
T ss_pred HHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence 34444555555555555544432 2234444444445555555555555555443332 122333333344444455555
Q ss_pred HHHHHHHHHHH
Q 005628 440 KACSVEEHMLE 450 (687)
Q Consensus 440 ~A~~l~~~M~~ 450 (687)
+|...|+...+
T Consensus 103 ~A~~~~~~al~ 113 (135)
T TIGR02552 103 SALKALDLAIE 113 (135)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.31 Score=53.04 Aligned_cols=125 Identities=13% Similarity=0.033 Sum_probs=94.8
Q ss_pred CCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
.||.+.|.....+-+.+.++.++|.+.|+.+... .|+ ....-.+-.+|.+.|++.+|..+++.-... .+-|...|.
T Consensus 336 ~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~ 412 (484)
T COG4783 336 QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWD 412 (484)
T ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHH
Confidence 4666666676778888888888888888888875 355 455666777888888888888888877654 456778888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.|-.+|...|+..+|..-..|+ |.-.|.+++|+..+..-.+....-.|+
T Consensus 413 ~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~~A~~~l~~A~~~~~~~~~~ 461 (484)
T COG4783 413 LLAQAYAELGNRAEALLARAEG------------------YALAGRLEQAIIFLMRASQQVKLGFPD 461 (484)
T ss_pred HHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHHHHHHHHHHHHHhccCCcHH
Confidence 8888888888888887766654 466788888888888877764444454
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.58 Score=50.13 Aligned_cols=92 Identities=12% Similarity=-0.008 Sum_probs=43.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEE--PELEALLRVSV 468 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~--~ty~~Li~~~~ 468 (687)
.+-..+...|++++|...+++..+.. +.+...+..+-..|...|++++|...++......- .|+. ..|..+-..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 33344455555555555555554432 12233444444455555555555555555443211 1221 22334445555
Q ss_pred hcCChHHHHHHHHHHH
Q 005628 469 EAGKGDRVYYLLHKLR 484 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~ 484 (687)
..|+.++|..++++..
T Consensus 198 ~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 198 ERGDYEAALAIYDTHI 213 (355)
T ss_pred HCCCHHHHHHHHHHHh
Confidence 5555555555555543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.095 Score=48.74 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=44.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (687)
+-..+...|++++|...|....... ..+...|..+-..+.+.|++++|...|+...+.. ..+...+..+-.++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444555555555555544331 1233444444445555555555555555554421 2244444445555555555
Q ss_pred hHHHHHHHHHHHhc
Q 005628 473 GDRVYYLLHKLRTS 486 (687)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (687)
.++|...|+.-...
T Consensus 108 ~~eAi~~~~~Al~~ 121 (144)
T PRK15359 108 PGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555554443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.065 Score=43.60 Aligned_cols=87 Identities=16% Similarity=0.161 Sum_probs=39.1
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+...|++++|..+|++..+.. +.+...+..+...+...+++++|.+.|+...... ..+..++..+...+...|+.+
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHH
Confidence 34444555555555555554432 1122344444444555555555555555444331 112234444444444445554
Q ss_pred HHHHHHHHH
Q 005628 440 KACSVEEHM 448 (687)
Q Consensus 440 ~A~~l~~~M 448 (687)
+|...+...
T Consensus 86 ~a~~~~~~~ 94 (100)
T cd00189 86 EALEAYEKA 94 (100)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.021 Score=59.22 Aligned_cols=188 Identities=11% Similarity=0.028 Sum_probs=131.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc--------------cccCCCcchhcccCCCCChhhhHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS--------------NLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~--------------~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
|.+.+++.+|..+..+.. |..- |. .++.|.. +.|...|...-..+.+-|.+.-.-.+-
T Consensus 295 yL~q~dVqeA~~L~Kdl~-----PttP-~E--yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 295 YLNQNDVQEAISLCKDLD-----PTTP-YE--YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred ecccccHHHHHHHHhhcC-----CCCh-HH--HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 788899999988876542 3221 11 2333322 344556666666677777666555566
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~ 438 (687)
+.+.-..++++.+-.++..+..=..-|.+-|| +..+++..|...+|.++|-.+....+ -|-.+|-+++ .+|.+++..
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~i-kn~~~Y~s~LArCyi~nkkP 444 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEI-KNKILYKSMLARCYIRNKKP 444 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhh-hhhHHHHHHHHHHHHhcCCc
Confidence 77778889999999999888765556666666 67889999999999999977654444 3667776655 578899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHhcCChHHHHHHHHHHHhccCCCChhHHH
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALL-RVSVEAGKGDRVYYLLHKLRTSVRKVSPSTAD 496 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li-~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~ 496 (687)
+.||+++-.+.. ..+..+.--|| +-|-+++++--|-+-|+++... .|+|..|.
T Consensus 445 ~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 445 QLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred hHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 999988766532 22344443333 5667888888888889998888 77887553
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.78 Score=45.44 Aligned_cols=195 Identities=13% Similarity=-0.012 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG-QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd-~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
+.--|--+|-+.|+...|..-+++..+. .|+ ..+|..+-..|- +.|..+.|.+-|. .-+..
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq----------~~Ge~~~A~e~Yr------kAlsl 98 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQ----------KLGENDLADESYR------KALSL 98 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHH----------HcCChhhHHHHHH------HHHhc
Confidence 4445556899999999999999999875 344 446667767777 7788888887774 11211
Q ss_pred cCCCCCccc-hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 272 SRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 272 ~~g~~d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
..+-.|+.. |.+. +|..|++++|...|++-... |+-.+-+
T Consensus 99 ~p~~GdVLNNYG~F---------LC~qg~~~eA~q~F~~Al~~---P~Y~~~s--------------------------- 139 (250)
T COG3063 99 APNNGDVLNNYGAF---------LCAQGRPEEAMQQFERALAD---PAYGEPS--------------------------- 139 (250)
T ss_pred CCCccchhhhhhHH---------HHhCCChHHHHHHHHHHHhC---CCCCCcc---------------------------
Confidence 101112211 2222 66666666666666654432 2111110
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
.||-+ +.-+..+.|+++.|.+.|++-.+.... ...+.-.+.+...+.|++-.|..+++.....+. ++..+.-..|.
T Consensus 140 -~t~eN-~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~ir 215 (250)
T COG3063 140 -DTLEN-LGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIR 215 (250)
T ss_pred -hhhhh-hHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHH
Confidence 12223 323333556666666666655543211 123444555555566666666666655554433 55555555555
Q ss_pred HHHhCCChHHHHHHHHHH
Q 005628 431 VFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M 448 (687)
---+.|+.+.|-+.=..+
T Consensus 216 iak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 216 IAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 555556555555443333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.3 Score=48.04 Aligned_cols=129 Identities=12% Similarity=0.111 Sum_probs=98.1
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHH-HhCCC--hHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVF-CNNGD--VDK 440 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~-~~~g~--~~~ 440 (687)
.++.+++...++...... +.|...|..|-..|...|++++|...|+...+.. | |...|..+-.++ ...|+ .++
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~--P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR--GENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 445666776676665543 4678899999999999999999999999877653 4 556666666654 67677 599
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHH
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIA 499 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~ 499 (687)
|.+++++..+..-. +...+..|-..+.+.|++++|...++++.+. .+..+ -+.+|.
T Consensus 129 A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l--~~~~~~r~~~i~ 185 (198)
T PRK10370 129 TREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL--NSPRVNRTQLVE 185 (198)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCccHHHHHH
Confidence 99999999886533 6678888888889999999999999999887 33332 555553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.97 Score=47.46 Aligned_cols=229 Identities=12% Similarity=-0.025 Sum_probs=144.5
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~ 242 (687)
..+.+..-+.++.... ...|+ ...|..+=..+.+.|+.++|...|++..+.. +-+...|+.+-..+.
T Consensus 41 ~~e~~i~~~~~~l~~~-----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~----- 109 (296)
T PRK11189 41 QQEVILARLNQILASR-----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLT----- 109 (296)
T ss_pred HHHHHHHHHHHHHccc-----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH-----
Confidence 3345555666664321 12222 2456666667889999999999999988753 235678888888888
Q ss_pred CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 243 ~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
..|+.++|...|+ ...+. .-.+...|..+-.. +...|++++|.+.|+.-.+. .|+....
T Consensus 110 -----~~g~~~~A~~~~~-------~Al~l-~P~~~~a~~~lg~~------l~~~g~~~eA~~~~~~al~~--~P~~~~~ 168 (296)
T PRK11189 110 -----QAGNFDAAYEAFD-------SVLEL-DPTYNYAYLNRGIA------LYYGGRYELAQDDLLAFYQD--DPNDPYR 168 (296)
T ss_pred -----HCCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHh--CCCCHHH
Confidence 8999999999995 22221 11144556666666 77899999999999887664 2332111
Q ss_pred chhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 005628 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (687)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~ 402 (687)
.+....+...++.++|.+.|.+..... .|+...+ .+ .....|+
T Consensus 169 ---------------------------------~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~~--~~~~lg~ 211 (296)
T PRK11189 169 ---------------------------------ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-NI--VEFYLGK 211 (296)
T ss_pred ---------------------------------HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-HH--HHHHccC
Confidence 101122334678999999997755332 3333222 22 2234566
Q ss_pred hHHHHHHHHHHHHc-CC----CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 403 GDMAFDMVKRMKSL-GI----NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 403 ~~~A~~l~~~M~~~-g~----~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
..++ +.+..+.+. .. .| ....|..+-..+.+.|+.++|...|+...+.+ .||-+.+-..+
T Consensus 212 ~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~~~ 277 (296)
T PRK11189 212 ISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRYAL 277 (296)
T ss_pred CCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHHHH
Confidence 6655 355555432 11 11 22478888889999999999999999998765 34655555433
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.41 Score=47.33 Aligned_cols=150 Identities=16% Similarity=0.163 Sum_probs=111.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g 436 (687)
|--+|...|++..|.+-+++..+.. +-+.-+|.++...|-+.|+.+.|.+-|+.-.+. .|+- ..-|..=.-+|..|
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence 4468999999999999999998764 235578999999999999999999999987654 3433 44455555679999
Q ss_pred ChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHcCHHHHHh
Q 005628 437 DVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARL 510 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a 510 (687)
++++|...|+.....--.| -..||.-+--+..+.|+.+.|...|++-.+......|.....-...++.+....|
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999987763222 2357777777778999999999999998887444444444444455555554333
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.16 Score=47.09 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=85.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE--ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~--~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~ 433 (687)
++..+ ..++...+.+.++.+......-.- ...=.+-..+...|++++|...|+......-.|+. ...-.|-..+.
T Consensus 18 ~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 18 ALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL 96 (145)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 45555 478888999999999886422111 22223446778899999999999999887633322 23334566777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
..|+.++|...++....... ....+..+=+.|.+.|+.++|...|+.
T Consensus 97 ~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 97 QQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 89999999999977543333 344566777888999999999998875
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.16 Score=46.00 Aligned_cols=99 Identities=8% Similarity=-0.039 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
+......+...+.+.|+.++|.+.|+.....+ ..+...|..+-..+.+.|+.++|..+++...+.+ ..+...|..+-.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 33456677778889999999999999987753 3366778888888999999999999999987764 445677777888
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 005628 466 VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|...|+.++|...|++....
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999988887
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.49 Score=57.36 Aligned_cols=191 Identities=12% Similarity=0.029 Sum_probs=138.8
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCC----CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccc
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL 323 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~----d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~ 323 (687)
..+.++.|+.++. +....-.+. -.-.|-++++. ..-.|.-+...++|++..+..
T Consensus 1470 elsEiekAR~iae-------rAL~tIN~REeeEKLNiWiA~lNl------En~yG~eesl~kVFeRAcqyc--------- 1527 (1710)
T KOG1070|consen 1470 ELSEIEKARKIAE-------RALKTINFREEEEKLNIWIAYLNL------ENAYGTEESLKKVFERACQYC--------- 1527 (1710)
T ss_pred hhhhhHHHHHHHH-------HHhhhCCcchhHHHHHHHHHHHhH------HHhhCcHHHHHHHHHHHHHhc---------
Confidence 5677888888884 222211222 11236666666 444555566677777665421
Q ss_pred hhhHhhccccccCCCcchhcccCCCCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC
Q 005628 324 NSQLLDGRSNLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD 402 (687)
Q Consensus 324 ~~~li~g~~~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~ 402 (687)
|. .+|-. |..-|.+.+.+++|-++|+.|.++- .-....|...++.+.+..+
T Consensus 1528 --------------------------d~~~V~~~-L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne 1579 (1710)
T KOG1070|consen 1528 --------------------------DAYTVHLK-LLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNE 1579 (1710)
T ss_pred --------------------------chHHHHHH-HHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccH
Confidence 11 13444 8899999999999999999998752 2466789999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 005628 403 GDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYL 479 (687)
Q Consensus 403 ~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~l 479 (687)
-++|..++.+..+. .|. +..-.-.+..-.+.|+.+.+..+|+.....-- --...|+..|+.=.+.|+.+.+..+
T Consensus 1580 ~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1580 AEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred HHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHH
Confidence 99999999876543 354 23334444455688999999999999887632 2456899999999999999999999
Q ss_pred HHHHHhccCCCChh
Q 005628 480 LHKLRTSVRKVSPS 493 (687)
Q Consensus 480 l~~M~~~~~g~~p~ 493 (687)
|++.... +.+|-
T Consensus 1657 feRvi~l--~l~~k 1668 (1710)
T KOG1070|consen 1657 FERVIEL--KLSIK 1668 (1710)
T ss_pred HHHHHhc--CCChh
Confidence 9999999 77777
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.11 Score=42.31 Aligned_cols=96 Identities=18% Similarity=0.158 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
+|..+...+...|++++|..+++...+.. ..+...+..+...+...|+.++|.+.|+...... ..+..++..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999987652 2233677778888899999999999999987764 334468888889999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.++|...+.+....
T Consensus 80 ~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 80 KLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHhHHHHHHHHHHHHcc
Confidence 999999999999887654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.84 Score=45.81 Aligned_cols=85 Identities=13% Similarity=0.068 Sum_probs=61.7
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCcchHH
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLG--INPRLRSYG 426 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~ty-----------------n~LI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd~~ty~ 426 (687)
|+.++|.+.|+++...... +...+ -.+-..+.+.|++++|...++...... -......+.
T Consensus 129 ~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~ 207 (235)
T TIGR03302 129 TAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALA 207 (235)
T ss_pred HHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHH
Confidence 6677788888877764321 11111 134556788999999999999987652 112346888
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.+...+.+.|+.++|...++.+...
T Consensus 208 ~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 208 RLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999988654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.33 Score=48.99 Aligned_cols=121 Identities=18% Similarity=0.130 Sum_probs=87.3
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
.+.|..+++-|.+.+++|.+- -+..|.+-|..++.+ .+.+.+|+-+|++|-++ ..|+.-+-|-...++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 344666888899999999864 366777767776665 45688899999998764 6788888888888888899
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG-DRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~-~~A~~ll~~M~~~ 486 (687)
++++|..++++...+.-. +..|..-+|-.-...|.. +-..+.+.+++..
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999999999998877543 444554455444555544 4445666776665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.91 E-value=2 Score=48.50 Aligned_cols=293 Identities=11% Similarity=-0.004 Sum_probs=170.5
Q ss_pred hHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 005628 157 NQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLC 236 (687)
Q Consensus 157 ~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~ 236 (687)
|+.+.+.+..++|++....-... +.-....--+--+-+.+.+++++|..+|..++.. .||.+-|.-.+..+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~-------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~ 262 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQ-------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKA 262 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhH-------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHH
Confidence 44666777777777777665211 0011122234446678889999999999999875 58888888777666
Q ss_pred HhcccCCcccCCCCchhhhh-hhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCC
Q 005628 237 SSAAVGVVKPAKSGSGMRTL-DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ 315 (687)
Q Consensus 237 ~~~~~~~~~~~k~g~~~~A~-~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~ 315 (687)
.. +.-+.-++. .+|... ++.-... -++-...-+.+ ....-.+....++..+.++|+
T Consensus 263 lg---------k~~d~~~~lk~ly~~l---s~~y~r~-e~p~Rlplsvl----------~~eel~~~vdkyL~~~l~Kg~ 319 (700)
T KOG1156|consen 263 LG---------KIKDMLEALKALYAIL---SEKYPRH-ECPRRLPLSVL----------NGEELKEIVDKYLRPLLSKGV 319 (700)
T ss_pred HH---------HHhhhHHHHHHHHHHH---hhcCccc-ccchhccHHHh----------CcchhHHHHHHHHHHHhhcCC
Confidence 51 122223333 444311 0111110 00000001111 111223445566777788885
Q ss_pred C---CCccccc--------hhhHhhccc--cccCCCcchhcccCCC-CChhhhHH-HHHHHHHhhccHHHHHHHHHHHHh
Q 005628 316 F---SNGHMKL--------NSQLLDGRS--NLERGPDDQSRKKDWS-IDNQDADE-IRLSEDAKKYAFQRGFEIYEKMCL 380 (687)
Q Consensus 316 ~---Pd~~ty~--------~~~li~g~~--~~a~~~~~~m~~~g~~-pd~~tyn~-~lI~~~~k~g~~~~A~~lf~~M~~ 380 (687)
. +|..++. ...++..|. ......|...-...++ |....|.. .++..|-+.|+++.|....+.-..
T Consensus 320 p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 320 PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 4 4555544 111222222 1111122211111133 34333433 356788899999999999998775
Q ss_pred CCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 381 DEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 381 ~gi~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
. .|+.+ -|-+=.+.++.+|++++|..++++-.+... ||...=+--..-..+++++++|.++.....+.|. +.+-
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~ 474 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVN 474 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhh
Confidence 4 45543 455556889999999999999999887653 6776655666777789999999999998888775 4433
Q ss_pred HHHHH----------HHHHhcCChHHHHHHHHHHHhc
Q 005628 460 LEALL----------RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 460 y~~Li----------~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+-+-+ .+|.+.|++-.|++=|+.+...
T Consensus 475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~ 511 (700)
T KOG1156|consen 475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKH 511 (700)
T ss_pred hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHH
Confidence 33322 3456677777777666666554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.18 Score=52.54 Aligned_cols=225 Identities=16% Similarity=0.118 Sum_probs=127.4
Q ss_pred CCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCc
Q 005628 165 NDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVV 244 (687)
Q Consensus 165 ~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~ 244 (687)
+-+.|++|+-.+. ...|. .-.|. |--|-+.+++.+|..+..++. ...|-.+ ++++...+..| .
T Consensus 269 ngEgALqVLP~L~--------~~IPE-ARlNL-~iYyL~q~dVqeA~~L~Kdl~--PttP~Ey----ilKgvv~aalG-Q 331 (557)
T KOG3785|consen 269 NGEGALQVLPSLM--------KHIPE-ARLNL-IIYYLNQNDVQEAISLCKDLD--PTTPYEY----ILKGVVFAALG-Q 331 (557)
T ss_pred CCccHHHhchHHH--------hhChH-hhhhh-eeeecccccHHHHHHHHhhcC--CCChHHH----HHHHHHHHHhh-h
Confidence 4556777766652 23344 33443 335778899999999987653 2234333 44444432111 1
Q ss_pred ccCCCCchhhhhhhhhhcccccccccccCCCC-Cccc-hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 245 KPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD-NNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 245 ~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~-d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
.-+....+.-|.+.|. |...++.. |.+. --++-.. +--..++|+.+-.+......=..-|.+.|
T Consensus 332 e~gSreHlKiAqqffq--------lVG~Sa~ecDTIpGRQsmAs~------fFL~~qFddVl~YlnSi~sYF~NdD~Fn~ 397 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQ--------LVGESALECDTIPGRQSMASY------FFLSFQFDDVLTYLNSIESYFTNDDDFNL 397 (557)
T ss_pred hcCcHHHHHHHHHHHH--------HhcccccccccccchHHHHHH------HHHHHHHHHHHHHHHHHHHHhcCcchhhh
Confidence 1113334566777773 44332333 3322 1111111 22222334444333333332222222233
Q ss_pred chhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHcC
Q 005628 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL-TAVGRMAMSMG 401 (687)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty-n~LI~~~~~~g 401 (687)
| +-.+++..|...+|.++|-......++ |..+| ..|.++|.+++
T Consensus 398 --------------------------------N--~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nk 442 (557)
T KOG3785|consen 398 --------------------------------N--LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNK 442 (557)
T ss_pred --------------------------------H--HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcC
Confidence 2 678899999999999999877655444 55565 55667889999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 005628 402 DGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (687)
+++.|++++-.|.. ..+..+.--+| +-|-+++++--|-+.|++++.. .|+..-|
T Consensus 443 kP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW 497 (557)
T KOG3785|consen 443 KPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW 497 (557)
T ss_pred CchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence 99999998866543 23444444444 4677889998888999888764 4555544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.12 Score=52.01 Aligned_cols=135 Identities=15% Similarity=0.142 Sum_probs=100.2
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----C
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----N 435 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~ 435 (687)
.-|++.|++++|++...... .......| +..+.+..+++-|...++.|..- -+-.|.+-|-.++.+ .
T Consensus 116 ~i~~~~~~~deAl~~~~~~~----~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGE----NLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhcCCChHHHHHHHhccc----hHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 45889999999999887622 22333333 34456778899999999999876 355666656665554 5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHcCH
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSK 505 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~ 505 (687)
+.+..|+-+|++|-++ ..|+.-+.+-+..++...|++++|..++++..++... .|+ ..|.|....-.|
T Consensus 187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~G 255 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLG 255 (299)
T ss_pred hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhC
Confidence 7799999999999764 7899999999999999999999999999999887333 355 456654443333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.22 Score=46.27 Aligned_cols=120 Identities=9% Similarity=0.008 Sum_probs=92.3
Q ss_pred CcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005628 338 PDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (687)
Q Consensus 338 ~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (687)
+.+....+.+..|...+.. +-..+...|++++|...|+...... +.+...|..+-..+.+.|++++|...|+......
T Consensus 11 ~~~~~~~~al~~~p~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 11 IPEDILKQLLSVDPETVYA-SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred CHHHHHHHHHHcCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3444444433333333444 5567789999999999999988754 3477889999999999999999999999998753
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 005628 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEA 462 (687)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~ 462 (687)
..+...+..+-.++.+.|+.++|...|+...+. .|+...|..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~ 130 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSE 130 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHH
Confidence 346788888888999999999999999998774 466655553
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.2 Score=43.94 Aligned_cols=95 Identities=12% Similarity=0.024 Sum_probs=50.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELEAL 463 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~~L 463 (687)
+-.+...+.+.|++++|.+.|..+.... |+ ...+..+...+.+.|+++.|...|+.+....- ......+..+
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3444455555666666666666655431 22 12344455556666666666666666554321 1113345555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..+.+.|+.++|...++++...
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 55566666666666666666655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.094 Score=53.01 Aligned_cols=99 Identities=22% Similarity=0.204 Sum_probs=67.9
Q ss_pred CHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC----------------hHHHHHH
Q 005628 386 NEASLTAVGRMAMS-----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD----------------VDKACSV 444 (687)
Q Consensus 386 d~~tyn~LI~~~~~-----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~----------------~~~A~~l 444 (687)
|-.+|-+.+.-|.. .+.++-...-++.|++.|+.-|..+|+.||+.+=|..- -+-+..+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444433 24455555566677777777777777777776654322 2457899
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHHHH
Q 005628 445 EEHMLEHGVYPEEPELEALLRVSVEAGKGD-RVYYLLHKLR 484 (687)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~-~A~~ll~~M~ 484 (687)
+++|+.+|+.||-.+-..||+++.+.+..- +..+++--|-
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 999999999999999999999999888653 4555555554
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.089 Score=57.20 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=93.1
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...++++.|..+|+++.+.. |++... |...+...++-.+|.+
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pev~~~-----------------------------------LA~v~l~~~~E~~AI~ 221 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PEVAVL-----------------------------------LARVYLLMNEEVEAIR 221 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--CcHHHH-----------------------------------HHHHHHhcCcHHHHHH
Confidence 556788999999999998875 553322 5566666777889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
++++.... .+-|......-.+.|.+.++.+.|+.+.+++... .|+. .+|..|..+|...|+++.|...++.|.
T Consensus 222 ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 222 LLNEALKE-NPQDSELLNLQAEFLLSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99888854 2346777777788889999999999999998865 4655 599999999999999999999988764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.54 E-value=1.9 Score=47.05 Aligned_cols=123 Identities=16% Similarity=0.183 Sum_probs=89.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHH----H
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS----V 431 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~----~ 431 (687)
.+.-|.+++++++..|++-+.+ ++-.+..||-.-..+...++++.|.+.|+..... .|+ .+.-.+||+ -
T Consensus 436 ~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~ 512 (606)
T KOG0547|consen 436 CALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLV 512 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhh
Confidence 3445777999999999998875 4555678898899999999999999999976643 232 111112221 1
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+--.+++..|.+++....+..-+ ....|.+|-..-.+.|++++|+++|++-...
T Consensus 513 ~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 513 LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11338899999999988664322 3567888989999999999999999986554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.58 Score=56.77 Aligned_cols=226 Identities=11% Similarity=0.063 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQ---YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNS 266 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-Gi~pd~---~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s 266 (687)
...|-.-|......++++.|.+++++.... +++-.. -.|.++++.-- --|.-+...++|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn----------~yG~eesl~kVFe------ 1521 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN----------AYGTEESLKKVFE------ 1521 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH----------hhCcHHHHHHHHH------
Confidence 478888888888889999999999888743 333222 23445554444 3344445556663
Q ss_pred ccccccCCCCCccc-hhccccccccccccccCCChhhHHHHHHHHHhc-CCCCCccccchhhHhhccccccCCCcchhcc
Q 005628 267 TELGDSRDMDNNGQ-LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 267 ~em~~~~g~~d~~t-yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~-g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
+.. ..-|..+ |-.|..- |.+.+.+++|.++|+.|.++ |..+.+ |.
T Consensus 1522 -RAc---qycd~~~V~~~L~~i------y~k~ek~~~A~ell~~m~KKF~q~~~v--W~--------------------- 1568 (1710)
T KOG1070|consen 1522 -RAC---QYCDAYTVHLKLLGI------YEKSEKNDEADELLRLMLKKFGQTRKV--WI--------------------- 1568 (1710)
T ss_pred -HHH---HhcchHHHHHHHHHH------HHHhhcchhHHHHHHHHHHHhcchhhH--HH---------------------
Confidence 111 1114444 7888777 99999999999999999875 323322 21
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR 423 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ 423 (687)
. ..+.+.+..+-+.|..++.+..+.=.+- -+-...-.+..-.+.|+.+.+..+|+..... .+-..-
T Consensus 1569 -----------~-y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtD 1635 (1710)
T KOG1070|consen 1569 -----------M-YADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTD 1635 (1710)
T ss_pred -----------H-HHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-Cccchh
Confidence 2 4566677777788888887766532111 1233444455556789999999999888765 333566
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHH
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~ 478 (687)
.|+..|+.=.++|+.+.+..+|++....++.|-. ..|.-.+..=-..|+-..++.
T Consensus 1636 lW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1636 LWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 7999999999999999999999999888887653 567777776666666554333
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.42 Score=41.80 Aligned_cols=93 Identities=10% Similarity=-0.011 Sum_probs=74.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV--PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi--~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~ 431 (687)
+...+.+.|++++|.+.|+++..... ......+..+...+.+.|++++|...|+.+.... |+ ...+..+-..
T Consensus 8 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 8 AALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--PKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--CCCCcccHHHHHHHHH
Confidence 56677889999999999999987532 1123566778999999999999999999988652 33 3457777788
Q ss_pred HHhCCChHHHHHHHHHHHHCC
Q 005628 432 FCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~g 452 (687)
+.+.|+.++|...++++.+..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHC
Confidence 889999999999999998874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.45 E-value=2.4 Score=46.16 Aligned_cols=125 Identities=10% Similarity=-0.021 Sum_probs=106.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-+.|.-.++.++|...|+.-.+-+. -....|+-+=+-|....+...|.+-++.-.+- .+-|-+.|=.|=.+|.-.+.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi-~p~DyRAWYGLGQaYeim~M 413 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI-NPRDYRAWYGLGQAYEIMKM 413 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHhc-CchhHHHHhhhhHHHHHhcc
Confidence 44778888899999999999887542 23567888888999999999999999987765 45688999999999999999
Q ss_pred hHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..-|+-.|++... ++| |...|.+|=++|.+.++.++|++-|..-..-
T Consensus 414 h~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 414 HFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred hHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999998876 444 7889999999999999999999999987765
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.53 Score=55.20 Aligned_cols=205 Identities=12% Similarity=0.078 Sum_probs=114.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
...+.||.- -+.++.|.++-++.. .+..|+.|-.+-. ..|.+.+|.+-|-
T Consensus 1079 ~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL----------~~~~v~dAieSyi----------- 1128 (1666)
T KOG0985|consen 1079 SAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQL----------QGGLVKDAIESYI----------- 1128 (1666)
T ss_pred HHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHH----------hcCchHHHHHHHH-----------
Confidence 444455432 245566655544432 3456677766666 6677888877773
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCCh
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (687)
.-+|...|--+|+. ..+.|.+++-.+.+..-.++.-+|.+-+-
T Consensus 1129 --kadDps~y~eVi~~------a~~~~~~edLv~yL~MaRkk~~E~~id~e----------------------------- 1171 (1666)
T KOG0985|consen 1129 --KADDPSNYLEVIDV------ASRTGKYEDLVKYLLMARKKVREPYIDSE----------------------------- 1171 (1666)
T ss_pred --hcCCcHHHHHHHHH------HHhcCcHHHHHHHHHHHHHhhcCccchHH-----------------------------
Confidence 22356668888888 88999999998888766666666665443
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------------
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-------------- 417 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-------------- 417 (687)
||-+|++.+++.+-.++.. .||+.-.-.+=+-|...|.++.|.-++.......
T Consensus 1172 ------Li~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1172 ------LIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred ------HHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 5556666665554443321 2444444444444444444444444443211000
Q ss_pred ------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 418 ------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 418 ------~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
-.-+..||--+-.+|...+.+..| .|..-.+........-||..|-..|.+++...+++
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 001344555555555444443332 23233344455566777777777787777766655
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.14 Score=46.38 Aligned_cols=97 Identities=16% Similarity=0.141 Sum_probs=51.9
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
|+.++.++|-++++.|+++....+++.. -|+.++... ..+. --....+.|+..+..+++.
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~ 60 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH 60 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence 4556667777777777776666666432 233222110 0000 1112345677777777777
Q ss_pred HHHhcCChHHHHHHHHHHHhccC-CCChhHHHHHHHHH
Q 005628 466 VSVEAGKGDRVYYLLHKLRTSVR-KVSPSTADVIAKWF 502 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~~~-g~~p~t~~~I~~~~ 502 (687)
+|+..|++..|+++++.....-. .++..+|..|..|+
T Consensus 61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777777776665522 12222665555553
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.41 Score=54.43 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=152.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.+.+.|-...|..+|+.+ ..|.-+|.+|+..|+-.+|..+..+-.+ -+||...|..|.+..-
T Consensus 407 ll~slGitksAl~I~Erl---------------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~- 468 (777)
T KOG1128|consen 407 LLLSLGITKSALVIFERL---------------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLH- 468 (777)
T ss_pred HHHHcchHHHHHHHHHhH---------------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhcc-
Confidence 455777788899999998 8889999999999999998888877766 4788888888887766
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhc-CCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL-GQFS 317 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~-g~~P 317 (687)
..--+++|.+++. ..+.+. -..|+-+ ....++++++.+.|+.-.+. -+.+
T Consensus 469 ---------d~s~yEkawElsn------~~sarA-----~r~~~~~---------~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 469 ---------DPSLYEKAWELSN------YISARA-----QRSLALL---------ILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------ChHHHHHHHHHhh------hhhHHH-----HHhhccc---------cccchhHHHHHHHHHHHhhcCccch
Confidence 3444678888875 111110 0011111 23367888888877643321 1111
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRM 396 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-~tyn~LI~~ 396 (687)
. +|-. .=.+..+.++++.|.+-|..-.. ..||- -.||.+-.+
T Consensus 520 ~----------------------------------~wf~-~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~a 562 (777)
T KOG1128|consen 520 G----------------------------------TWFG-LGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTA 562 (777)
T ss_pred h----------------------------------HHHh-ccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHH
Confidence 1 1111 22234466788888888877654 34554 579999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPEEPELEALLRVSV 468 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd~~ty~~Li~~~~ 468 (687)
|.+.++-.+|+..+.+-.+.+ .-+...|-.-+....+.|.+++|++.+..|.+... .-|..+...++....
T Consensus 563 yi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 563 YIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999999999988776 45566677777778899999999999888765321 125555555555443
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.21 E-value=1.1 Score=49.61 Aligned_cols=124 Identities=10% Similarity=0.063 Sum_probs=87.5
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCc----chHHHHHHHHHh
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRL----RSYGPALSVFCN 434 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~----~ty~~lI~~~~~ 434 (687)
-|.+.+.++.|.++|.+-... .+-|+..++-+=-..-..+.+.+|...|..-... .+.+.. -+++.|=+.|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 466677888888888876643 2335566666666666678888888888765521 122222 345666677888
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+..++|...|+..+.. ..-|..+|.++--.|...|+++.|.+.|++-...
T Consensus 468 l~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 88899998888887665 3447778888888888889999998888876654
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.16 Score=57.16 Aligned_cols=77 Identities=16% Similarity=0.136 Sum_probs=50.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-+.|+..|+++.|.++|-+- ..++--|.+|.++|+|+.|+++-++. .|-......|-+--.-+-++|+
T Consensus 771 iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcc
Confidence 557777788888888877653 23566777888888888887776543 3333445555555555556666
Q ss_pred hHHHHHHH
Q 005628 438 VDKACSVE 445 (687)
Q Consensus 438 ~~~A~~l~ 445 (687)
+.+|.+++
T Consensus 840 f~eaeqly 847 (1636)
T KOG3616|consen 840 FAEAEQLY 847 (1636)
T ss_pred hhhhhhee
Confidence 66666555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=3.3 Score=49.67 Aligned_cols=112 Identities=15% Similarity=0.097 Sum_probs=83.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-.+|-+.|+.++|..+++++.+.. +-|..+.|-+-..|+.. ++++|.+++...... |....+
T Consensus 122 LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq 184 (906)
T PRK14720 122 LAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQ 184 (906)
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhc
Confidence 6678888899999999999998876 55788889999999998 999999988876654 333344
Q ss_pred hHHHHHHHHHHHH------------------C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLE------------------H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~------------------~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...+.++|.++.. . |..--+.++-.|...|-...+++++..+|+.+.+.
T Consensus 185 ~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~ 252 (906)
T PRK14720 185 YVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH 252 (906)
T ss_pred chHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence 4444444444433 2 33334556666777888888999999999998887
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.93 E-value=5.4 Score=43.59 Aligned_cols=282 Identities=11% Similarity=0.054 Sum_probs=158.6
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
+..+++..|.++|+.-. ...|+...|++.|+.=.+-..++.|..+|++.+- +.|++.+|--...-=-
T Consensus 152 E~LgNi~gaRqiferW~--------~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~--- 218 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWM--------EWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEE--- 218 (677)
T ss_pred HHhcccHHHHHHHHHHH--------cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHH---
Confidence 45678899999998752 4678889999999999999999999999998874 4588888766655544
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
++|.+..|..++. .-++..|-. +...+++.-.- -.....++.|.-+|.--... .|.
T Consensus 219 -------k~g~~~~aR~Vye-------rAie~~~~d~~~e~lfvaFA~f------Ee~qkE~ERar~iykyAld~--~pk 276 (677)
T KOG1915|consen 219 -------KHGNVALARSVYE-------RAIEFLGDDEEAEILFVAFAEF------EERQKEYERARFIYKYALDH--IPK 276 (677)
T ss_pred -------hcCcHHHHHHHHH-------HHHHHhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHh--cCc
Confidence 7788887777774 111110111 11112222111 11223344444444332221 122
Q ss_pred ccccchhhHhhccc-----------------cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC
Q 005628 319 GHMKLNSQLLDGRS-----------------NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD 381 (687)
Q Consensus 319 ~~ty~~~~li~g~~-----------------~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~ 381 (687)
..+- .|-.+|. ...+.-++.+++. -+-|-.+|-. .+..--..|+.+...++|+.....
T Consensus 277 ~rae---eL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYDsWfd-ylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 277 GRAE---ELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYDSWFD-YLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred ccHH---HHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCchHHHH-HHHHHHhcCCHHHHHHHHHHHHcc
Confidence 2111 1222221 0111112222221 1123334444 444455567778888888877654
Q ss_pred CCCCC-HH-HHHHHHH-----HH---HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH----hCCChHHHHHHHHH
Q 005628 382 EVPMN-EA-SLTAVGR-----MA---MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC----NNGDVDKACSVEEH 447 (687)
Q Consensus 382 gi~pd-~~-tyn~LI~-----~~---~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~----~~g~~~~A~~l~~~ 447 (687)
++|- .. -|---|- +| ....+++.+.++++...+. ++-...||.-+=-.|+ ++.++..|.+++..
T Consensus 352 -vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~ 429 (677)
T KOG1915|consen 352 -VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGN 429 (677)
T ss_pred -CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 3331 11 1111111 11 1256777777777776663 4445566665554443 45677777777665
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 448 MLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. |.-|-.-+|-..|..=.+.+.+|....|+.+..+-
T Consensus 430 AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 430 AI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred Hh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 43 55677777777777777777777777777777766
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.89 E-value=1.4 Score=45.25 Aligned_cols=276 Identities=11% Similarity=0.002 Sum_probs=151.1
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLL-YLCSSAA 240 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll-~~~~~~~ 240 (687)
+..+..+|.+++..--++.. + +....+.|-.+|-...++..|-..|+++-.. -|-..-|..-- ..+.
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p-~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY--- 89 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSP-R------SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY--- 89 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCc-c------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH---
Confidence 45677788888777644321 1 2266777777888888888888888887643 34333332110 0111
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCC-ccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN-NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d-~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (687)
+.+...+|+++.. .|.++..+.+ .+-.-+-| .-+.+++-.+..+.++....|-
T Consensus 90 -------~A~i~ADALrV~~-------~~~D~~~L~~~~lqLqaAI--------kYse~Dl~g~rsLveQlp~en~---- 143 (459)
T KOG4340|consen 90 -------KACIYADALRVAF-------LLLDNPALHSRVLQLQAAI--------KYSEGDLPGSRSLVEQLPSENE---- 143 (459)
T ss_pred -------HhcccHHHHHHHH-------HhcCCHHHHHHHHHHHHHH--------hcccccCcchHHHHHhccCCCc----
Confidence 3445667777763 2222100000 00011111 1134445555555544432210
Q ss_pred cccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 005628 320 HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAM 398 (687)
Q Consensus 320 ~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~ 398 (687)
- .+.+. .-.-..+.|+.+.|.+-|+...+- |..| ...||.-+..|
T Consensus 144 --A-----------------------------d~~in-~gCllykegqyEaAvqkFqaAlqvsGyqp-llAYniALaHy- 189 (459)
T KOG4340|consen 144 --A-----------------------------DGQIN-LGCLLYKEGQYEAAVQKFQAALQVSGYQP-LLAYNLALAHY- 189 (459)
T ss_pred --c-----------------------------chhcc-chheeeccccHHHHHHHHHHHHhhcCCCc-hhHHHHHHHHH-
Confidence 0 00001 112235788999999999887764 5554 56788776554
Q ss_pred HcCChHHHHHHHHHHHHcCCC-------------CCcch--------HHHHHHHH-------HhCCChHHHHHHHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGIN-------------PRLRS--------YGPALSVF-------CNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~-------------Pd~~t--------y~~lI~~~-------~~~g~~~~A~~l~~~M~~ 450 (687)
+.|+.+.|++...++.++|++ ||+.+ -+.++.++ .+.|+.+.|.+-+-+|.-
T Consensus 190 ~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPP 269 (459)
T KOG4340|consen 190 SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPP 269 (459)
T ss_pred hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCC
Confidence 568889999999999888764 34332 23344433 467888888888888853
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhH-HHHHHHHHcCHHHHHhh
Q 005628 451 H-GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST-ADVIAKWFNSKEAARLG 511 (687)
Q Consensus 451 ~-gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t-~~~I~~~~~~~~~~~a~ 511 (687)
+ .-..|.+|..-+--.- ..+++.+..+=+..+.... .+.+.| .|++.-+|+.....-|.
T Consensus 270 RaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAA 330 (459)
T KOG4340|consen 270 RAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAA 330 (459)
T ss_pred cccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHH
Confidence 3 3445667765432221 2333444444444444442 244445 46677888877654443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.87 E-value=2.3 Score=47.96 Aligned_cols=292 Identities=12% Similarity=0.061 Sum_probs=160.1
Q ss_pred hcCCCchhhhHHHhhhcCCCCCC-CCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---h
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSK-KDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCS---S 238 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~-g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~---~ 238 (687)
.++..+-..+|.+.+.. +.|.. .-.|. ..|..+-..|-..|+++.|..+|++..+...+- -+-|-..+| .
T Consensus 360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~-~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~----v~dLa~vw~~wae 433 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT-VDPKKAVGSPG-TLWVEFAKLYENNGDLDDARVIFEKATKVPYKT----VEDLAEVWCAWAE 433 (835)
T ss_pred cCChHHHHHHHHHHHHc-cCcccCCCChh-hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccc----hHHHHHHHHHHHH
Confidence 45666777778777543 22222 12333 578888899999999999999999987655432 222233333 2
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccC------CCC--------CccchhccccccccccccccCCChhhHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR------DMD--------NNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~------g~~--------d~~tyn~Li~~~~~~~~~~~~g~~~~A~ 304 (687)
... +..+++.|..+..-- ..+.... |-. ....|.-.++- .-..|-++...
T Consensus 434 mEl------rh~~~~~Al~lm~~A----~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~Dl------eEs~gtfestk 497 (835)
T KOG2047|consen 434 MEL------RHENFEAALKLMRRA----THVPTNPELEYYDNSEPVQARLHRSLKIWSMYADL------EESLGTFESTK 497 (835)
T ss_pred HHH------hhhhHHHHHHHHHhh----hcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHH------HHHhccHHHHH
Confidence 111 445566666665310 0111100 000 11124444444 44566778888
Q ss_pred HHHHHHHhcCCCCCccccchhhHhhc--cccccCCCcchhcccCC----CCChh-hhHHHHHHHHHhhc--cHHHHHHHH
Q 005628 305 STFNEKENLGQFSNGHMKLNSQLLDG--RSNLERGPDDQSRKKDW----SIDNQ-DADEIRLSEDAKKY--AFQRGFEIY 375 (687)
Q Consensus 305 ~lf~eM~~~g~~Pd~~ty~~~~li~g--~~~~a~~~~~~m~~~g~----~pd~~-tyn~~lI~~~~k~g--~~~~A~~lf 375 (687)
.+++.+.+..+.--.+..|...+++- |-.++.+++ .+|+ .|++. .||+.|...-.+-| .+++|..+|
T Consensus 498 ~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y----ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF 573 (835)
T KOG2047|consen 498 AVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY----ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF 573 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH----HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 88888887765433333331122221 112222222 2332 24443 46664444333433 689999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 376 EKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 376 ~~M~~~gi~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
++-.+ |++|...-+--|+-+- -+.|....|+.+++.... ++++. ...||+.|.-....=-+....++|++..+.
T Consensus 574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~ 651 (835)
T KOG2047|consen 574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES 651 (835)
T ss_pred HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh
Confidence 99888 7776544333332221 125778888888887443 34443 357888887666554455556667666654
Q ss_pred CCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHH
Q 005628 452 GVYPEEPELEALLRVS---VEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 452 gv~pd~~ty~~Li~~~---~~~g~~~~A~~ll~~M~ 484 (687)
-||...-..-|+.- ++.|.+++|..++..-.
T Consensus 652 --Lp~~~~r~mclrFAdlEtklGEidRARaIya~~s 685 (835)
T KOG2047|consen 652 --LPDSKAREMCLRFADLETKLGEIDRARAIYAHGS 685 (835)
T ss_pred --CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhh
Confidence 55554443333322 67788888877766543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.27 Score=44.58 Aligned_cols=55 Identities=16% Similarity=0.117 Sum_probs=45.9
Q ss_pred CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC
Q 005628 417 GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH-GVYPEEPELEALLRVSVEAG 471 (687)
Q Consensus 417 g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-gv~pd~~ty~~Li~~~~~~g 471 (687)
.+.|+..+-.+++.+|+.+|++..|+++.+...+. ++..+..+|..|+.-.-..-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999987664 78888999999987664433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.8 Score=52.19 Aligned_cols=213 Identities=11% Similarity=0.095 Sum_probs=151.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCC
Q 005628 196 VELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (687)
Q Consensus 196 ~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~ 275 (687)
.+-..+...|-...|+.+|++.. .|--+|..|+ ..|+.++|..+.. +++...
T Consensus 403 ~laell~slGitksAl~I~Erle---------mw~~vi~CY~----------~lg~~~kaeei~~------q~lek~--- 454 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLE---------MWDPVILCYL----------LLGQHGKAEEINR------QELEKD--- 454 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHH----------HhcccchHHHHHH------HHhcCC---
Confidence 44466778899999999998864 5677888888 6778888888874 333311
Q ss_pred CCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhH
Q 005628 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (687)
Q Consensus 276 ~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn 355 (687)
+|..-|..|-+. ......++.|.++++..-.+- .-|
T Consensus 455 ~d~~lyc~LGDv------~~d~s~yEkawElsn~~sarA-----~r~--------------------------------- 490 (777)
T KOG1128|consen 455 PDPRLYCLLGDV------LHDPSLYEKAWELSNYISARA-----QRS--------------------------------- 490 (777)
T ss_pred CcchhHHHhhhh------ccChHHHHHHHHHhhhhhHHH-----HHh---------------------------------
Confidence 145557777777 667777788888887543220 000
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHh
Q 005628 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCN 434 (687)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~ 434 (687)
+-......++++++.+.|+.-.+-. +.-..||=.+=.+.-+.+++..|.+-|..... ..||. ..||.+=.+|.+
T Consensus 491 --~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~ 565 (777)
T KOG1128|consen 491 --LALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIR 565 (777)
T ss_pred --hccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHH
Confidence 0011123578888888887544321 12334565555566678999999999987664 35654 689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+-.+|+..+.+..+.. .-+.-.|.-.+....+.|.+++|++.+++|.+.
T Consensus 566 ~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 566 LKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 999999999999999887 445566766777779999999999999887654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.05 Score=45.29 Aligned_cols=79 Identities=15% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHH
Q 005628 366 YAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~ 443 (687)
|+++.|..+|+++.+.... ++...+-.+..+|.+.|++++|..+++. .+ +.|+. ...-.+-.+|.+.|+.++|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4556666666666554321 1333333355666666666666666655 11 11211 222222344555566666665
Q ss_pred HHHH
Q 005628 444 VEEH 447 (687)
Q Consensus 444 l~~~ 447 (687)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.5 Score=44.17 Aligned_cols=122 Identities=11% Similarity=0.009 Sum_probs=96.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.+....+.|++.+|...|.+...- -++|..+||.+=-+|.+.|+.++|..-|.+..+.- .-+...+|.|--.|.-.|+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd 183 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD 183 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC
Confidence 566777889999999999988763 46788999999999999999999998888776652 1244567777777888899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
.+.|..++.+....+.. |..+-.-|.-.....|++++|..+-..
T Consensus 184 ~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 184 LEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999988776544 555556677777889999999887554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.50 E-value=1.2 Score=45.57 Aligned_cols=173 Identities=13% Similarity=0.060 Sum_probs=103.7
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhH
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~l 327 (687)
+.|+.+.|.+-|. +-..-+|..+.+.||.-+.- -+.++.+.|+++..++.++|++-.. -++.+..
T Consensus 156 kegqyEaAvqkFq-------aAlqvsGyqpllAYniALaH-------y~~~qyasALk~iSEIieRG~r~HP-ElgIGm~ 220 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQ-------AALQVSGYQPLLAYNLALAH-------YSSRQYASALKHISEIIERGIRQHP-ELGIGMT 220 (459)
T ss_pred ccccHHHHHHHHH-------HHHhhcCCCchhHHHHHHHH-------HhhhhHHHHHHHHHHHHHhhhhcCC-ccCccce
Confidence 8899999999994 44444477788889887654 4678899999999999999965221 1110000
Q ss_pred hhccccccCCCcchhcccCCCCChhhhHHHHH-------HHHHhhccHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHH
Q 005628 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRL-------SEDAKKYAFQRGFEIYEKMCLD-EVPMNEASLTAVGRMAMS 399 (687)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI-------~~~~k~g~~~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~ 399 (687)
.+|-- ++. +.-..+..-+.|+ .-+.+.|+.+.|.+-+-.|.-+ .-..|.+|...+.-.-+
T Consensus 221 tegiD--vrs---------vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~- 288 (459)
T KOG4340|consen 221 TEGID--VRS---------VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM- 288 (459)
T ss_pred eccCc--hhc---------ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-
Confidence 11000 000 0000001111122 2345677888888888888643 23467777765533222
Q ss_pred cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 400 MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
.+++.+..+-+.-+...+- --..||..++--|||+.-++.|-.++.+=
T Consensus 289 ~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 289 DARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred cCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 3445444544444444321 23478889999999999999998888764
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.1 Score=44.12 Aligned_cols=109 Identities=11% Similarity=0.048 Sum_probs=84.2
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HHcCC--hHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA-MSMGD--GDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~-~~~g~--~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
.|.. |-..|...|++++|...|++..... +-|...+..+-.++ ...|+ .++|.+++++..+..- -+...+..+-
T Consensus 75 ~w~~-Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA 151 (198)
T PRK10370 75 QWAL-LGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLA 151 (198)
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHH
Confidence 3444 6678889999999999999988764 23677888888764 67777 5999999999887642 2667888888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
..+.+.|++++|...|+.+.+. ..|+..-+. +|.+
T Consensus 152 ~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~-~i~~ 186 (198)
T PRK10370 152 SDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ-LVES 186 (198)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH-HHHH
Confidence 8999999999999999999876 345554443 4444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.91 Score=42.02 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=30.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKR 412 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~ 412 (687)
|-..+...|++++|+..++...... .....+..+=+.|.+.|+.++|...|+.
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455566677777777775533222 2233445555566667777777666653
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.086 Score=43.84 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHHHcCC-CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHH
Q 005628 400 MGDGDMAFDMVKRMKSLGI-NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVY 477 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~g~-~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~ 477 (687)
.|+++.|+.+++.+.+..- .|+...+-.+-.+|.+.|+.++|.++++. .+ +.|+. ...-.+-.+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 5889999999999987632 22344455578899999999999999988 22 22322 33345567788999999999
Q ss_pred HHHHH
Q 005628 478 YLLHK 482 (687)
Q Consensus 478 ~ll~~ 482 (687)
.+|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=94.25 E-value=1.5 Score=41.91 Aligned_cols=108 Identities=18% Similarity=0.170 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALL 464 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li 464 (687)
..|..+-..+...|++++|...|++.....-.+. ...|..+-..+.+.|+.++|...+++..+. .| +...+..+-
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 3455555666666777777777776654322121 245666666667777777777777666553 23 334444444
Q ss_pred HHHHhcCC--------------hHHHHHHHHHHHhccCCCChhHHHHHHHH
Q 005628 465 RVSVEAGK--------------GDRVYYLLHKLRTSVRKVSPSTADVIAKW 501 (687)
Q Consensus 465 ~~~~~~g~--------------~~~A~~ll~~M~~~~~g~~p~t~~~I~~~ 501 (687)
..|...|+ +++|.+++++.... .|+.|..+..|
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~----~p~~~~~~~~~ 160 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL----APNNYIEAQNW 160 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh----CchhHHHHHHH
Confidence 55555554 45666666665554 45544443333
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.07 E-value=3.1 Score=50.86 Aligned_cols=272 Identities=9% Similarity=-0.009 Sum_probs=158.0
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HHHHHHHHH
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--K-LG--QYHYNVLLY 234 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi--~-pd--~~tyn~Ll~ 234 (687)
...++.++|...++.-... .+.. ..+ -...++.+-..+...|++++|...+.+.....- . +. ..+++.+-.
T Consensus 463 ~~~g~~~~A~~~~~~al~~--~~~~-~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 463 INDGDPEEAERLAELALAE--LPLT-WYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HhCCCHHHHHHHHHHHHhc--CCCc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 3566788888888876432 1111 111 123456666677889999999999998874311 1 11 223333444
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCC----ccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d----~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
.+. ..|++++|...+.-. .+.....+..+ ...+..+-.. +...|++++|...+.+.
T Consensus 540 ~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 540 ILF----------AQGFLQAAYETQEKA----FQLIEEQHLEQLPMHEFLLRIRAQL------LWEWARLDEAEQCARKG 599 (903)
T ss_pred HHH----------HCCCHHHHHHHHHHH----HHHHHHhccccccHHHHHHHHHHHH------HHHhcCHHHHHHHHHHh
Confidence 444 678999998887410 11111112111 1123233233 55669999999988876
Q ss_pred HhcCC--CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CCC
Q 005628 311 ENLGQ--FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVP 384 (687)
Q Consensus 311 ~~~g~--~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~ 384 (687)
....- .|... ...+.. +-..+...|+.++|.+.+++.... +..
T Consensus 600 l~~~~~~~~~~~------------------------------~~~~~~-la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 600 LEVLSNYQPQQQ------------------------------LQCLAM-LAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred HHhhhccCchHH------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 54211 01100 111222 445667889999999999887542 111
Q ss_pred CCH-HHH-HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc---chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC
Q 005628 385 MNE-ASL-TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL---RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (687)
Q Consensus 385 pd~-~ty-n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~---~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p 455 (687)
... ... ...+..+...|+.+.|...+............ ..+..+-..+...|+.++|..+++..... |..+
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 111 010 11234455689999999998765432111110 11345566778899999999999887653 3333
Q ss_pred C-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 456 E-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 456 d-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+ ..++..+-.++.+.|+.++|...|.+..+.
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 245666667778999999999999988765
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=8 Score=47.23 Aligned_cols=276 Identities=13% Similarity=0.012 Sum_probs=152.0
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQF--QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYL 235 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~--tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~Ll~~ 235 (687)
..++.++|..++......-...+.+..|... ....+-..+...|++++|...+++....--..+. ...+.+-..
T Consensus 421 ~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~ 500 (903)
T PRK04841 421 SQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV 500 (903)
T ss_pred HCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence 4456677777776653321111101112211 1122223456789999999999998763111122 223333333
Q ss_pred HHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCC--ccchhccccccccccccccCCChhhHHHHHHHHHhc
Q 005628 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDN--NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENL 313 (687)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d--~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~ 313 (687)
+. ..|++++|...+.-. .+.....|-.. ...++.+-.. +...|++++|...+++....
T Consensus 501 ~~----------~~G~~~~A~~~~~~a----l~~~~~~g~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~ 560 (903)
T PRK04841 501 HH----------CKGELARALAMMQQT----EQMARQHDVYHYALWSLLQQSEI------LFAQGFLQAAYETQEKAFQL 560 (903)
T ss_pred HH----------HcCCHHHHHHHHHHH----HHHHhhhcchHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHH
Confidence 44 678999998888411 01111111111 1123333334 67789999999988876542
Q ss_pred CC---CCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC--CCCC--C
Q 005628 314 GQ---FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM--N 386 (687)
Q Consensus 314 g~---~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p--d 386 (687)
.- .++.. .....+.. +-..+...|++++|...+++.... ...+ .
T Consensus 561 ~~~~~~~~~~----------------------------~~~~~~~~-la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 561 IEEQHLEQLP----------------------------MHEFLLRI-RAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHhcccccc----------------------------HHHHHHHH-HHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 10 00000 00111222 334556679999999999887542 1112 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCcchH-----HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPRLRSY-----GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE--- 457 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd~~ty-----~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~--- 457 (687)
...+..+...+...|+.++|.+.+.......- ......+ ...+..+...|+.+.|.+.+............
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 34455566678889999999999988754310 0111111 11234456689999999998776542211111
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+..+-.++...|+.++|..++++....
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 12345667788899999999999987654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.6 Score=47.76 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=86.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~ 440 (687)
+...|.+++|+..++.+... .+-|+.-+....+.+.+.++.++|.+.++.+... .|+. ...-.+-.+|.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 34667888888888887764 2345666666777888888888888888887764 4663 334445567788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|..+++.-... .+-|...|..|-.+|...|+..++..-.-++-..
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~ 437 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL 437 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence 88888877654 4557788888888888888888777766655443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.8 Score=50.90 Aligned_cols=124 Identities=8% Similarity=-0.079 Sum_probs=91.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch-HHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~~~ 435 (687)
|-......|..++|..+++...+. .|| +.....+...+.+.+++++|+...+..... .|+..+ ...+-.++...
T Consensus 92 La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 92 VARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAKSWDEI 167 (694)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHh
Confidence 556667788888888888888764 455 456677788888888888888888887765 355544 44444566677
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|+.++|.++|++....+ .-+..++..+=..+-+.|+.++|...|++-.+.
T Consensus 168 g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 168 GQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred cchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888888732 223677777778888888888888888877654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.91 E-value=1.6 Score=48.17 Aligned_cols=125 Identities=15% Similarity=0.142 Sum_probs=94.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHH-HHHcCCCCCcchH-HHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKR-MKSLGINPRLRSY-GPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~-M~~~g~~Pd~~ty-~~lI~~~~~ 434 (687)
.|+.--+..-++.|..+|.+..+.+..+ ++++++++|.-||. ++..-|+++|+- |+.. +|.-.| ..-++-+..
T Consensus 372 ~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf---~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 372 YMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKF---GDSPEYVLKYLDFLSH 447 (656)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhc---CCChHHHHHHHHHHHH
Confidence 5666667777888888888888887777 78888888888775 677788888875 3333 344444 456677777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEE--PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~--~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.++-..|..+|+..+..++.||. ..|..+|+.=..-|++..+.++-+++...
T Consensus 448 lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 448 LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 78888888888888888666654 67888888888888888888888777665
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.83 E-value=7.6 Score=46.00 Aligned_cols=125 Identities=16% Similarity=0.163 Sum_probs=84.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch--HHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP--MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS--YGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~--pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t--y~~lI~~~~ 433 (687)
|-+.|.-.|+++.++.+...+...-.. .-...|=-+-++|-..|++++|...|.+-. +..||-.+ +--|-..|.
T Consensus 276 LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~--k~~~d~~~l~~~GlgQm~i 353 (1018)
T KOG2002|consen 276 LANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESL--KADNDNFVLPLVGLGQMYI 353 (1018)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH--ccCCCCccccccchhHHHH
Confidence 667888889999999998888764321 112346667788888999999999886544 44555533 445778889
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcC----ChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAG----KGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g----~~~~A~~ll~~M~~~ 486 (687)
+.|+++.+...|+...+. .||. .|.-+|=..|+..+ ..++|..++.+-...
T Consensus 354 ~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 354 KRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred HhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 999999999999988764 3443 44444444444443 446666666665554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.16 Score=51.43 Aligned_cols=75 Identities=9% Similarity=-0.013 Sum_probs=63.0
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----------------ChHHHHHHHHHHHHcCCCCCcchHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----------------DGDMAFDMVKRMKSLGINPRLRSYGP 427 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g----------------~~~~A~~l~~~M~~~g~~Pd~~ty~~ 427 (687)
+.+.++-...-++.|++.|+.-|..+|+.||+.+=|.. .-+-+++++++|...|+.||..+-..
T Consensus 84 ~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~ 163 (406)
T KOG3941|consen 84 GRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDI 163 (406)
T ss_pred ccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHH
Confidence 34567777788899999999999999999999765532 22348899999999999999999999
Q ss_pred HHHHHHhCCCh
Q 005628 428 ALSVFCNNGDV 438 (687)
Q Consensus 428 lI~~~~~~g~~ 438 (687)
||++|.+.+..
T Consensus 164 lvn~FGr~~~p 174 (406)
T KOG3941|consen 164 LVNAFGRWNFP 174 (406)
T ss_pred HHHHhcccccc
Confidence 99999988764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=93.77 E-value=1.5 Score=41.78 Aligned_cols=78 Identities=19% Similarity=0.238 Sum_probs=59.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~ 434 (687)
+-..|...|++++|...|++.......+. ...|..+...+.+.|++++|...+.+.... .|+ ...+..+-..+..
T Consensus 41 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~ 118 (172)
T PRK02603 41 DGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNNIAVIYHK 118 (172)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHH
Confidence 55677788999999999999987543332 467888999999999999999999988764 343 4455566666766
Q ss_pred CCC
Q 005628 435 NGD 437 (687)
Q Consensus 435 ~g~ 437 (687)
.|+
T Consensus 119 ~g~ 121 (172)
T PRK02603 119 RGE 121 (172)
T ss_pred cCC
Confidence 666
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.95 Score=48.91 Aligned_cols=101 Identities=12% Similarity=0.104 Sum_probs=76.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+...|++++|.++|++...... -+...|..+-.+|.+.|++++|+..++...... ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 345577899999999999887542 356778888888889999999999998887652 124567777778888899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
+|...|+...+ +.|+......++
T Consensus 88 eA~~~~~~al~--l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGAS--LAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHH
Confidence 99999988876 346555555444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.3 Score=50.32 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=52.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
-.....+.+|+.+++.++.+... .--|.-+.+.|+..|+++.|.++|-+ .+ -++-.|..|.++|+++.|
T Consensus 742 ai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e---~~------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTE---AD------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHh---cc------hhHHHHHHHhccccHHHH
Confidence 33444555555555555543221 12244455555666666666665542 11 245555566666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
+++-++. +|-......|-+--.-+-+.|++.+|.+++-
T Consensus 811 ~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyi 848 (1636)
T KOG3616|consen 811 FKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYI 848 (1636)
T ss_pred HHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeE
Confidence 5554433 2333333444444444455555555555543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.6 Score=47.13 Aligned_cols=138 Identities=15% Similarity=0.121 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH-HHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY-GPALS 430 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty-~~lI~ 430 (687)
+|-. .|+.-.+..-++.|..+|-+..+.| +.+++..|+++|.-+|. |+..-|..+|+-=... -||...| +-.+.
T Consensus 399 v~C~-~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCV-HLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred HHHH-HHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 4444 6777778888899999999999999 67999999999998875 7788899999753222 3676665 45667
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 431 VFCNNGDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
-+.+.++-+.|..+|+.-.++ +.-+ ...|..+|+.=.+.|++..|+.+=++|... .+..++..+
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~ev 540 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEV 540 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHH
Confidence 778889999999999955443 2223 568999999999999999999999999998 777776655
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=5.8 Score=45.07 Aligned_cols=146 Identities=8% Similarity=-0.038 Sum_probs=97.6
Q ss_pred cCCCCChhhhHHHHHHHHHh--h---ccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcC--------ChHHHHHHH
Q 005628 345 KDWSIDNQDADEIRLSEDAK--K---YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMG--------DGDMAFDMV 410 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k--~---g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g--------~~~~A~~l~ 410 (687)
.....|...|.. .+.+... . +..+.|..+|++..+. .|| ...|..+..++.... ++..+.+..
T Consensus 331 ~~~~~~~~Ay~~-~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTL-FYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 344556666766 5554332 2 2477999999999875 355 344554444333321 123334444
Q ss_pred HHHHHc-CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005628 411 KRMKSL-GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (687)
Q Consensus 411 ~~M~~~-g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (687)
...... ....+...|.++--.+...|+.++|...++...+.+ |+...|..+-..|...|+.++|.+.+++-... .
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~ 483 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--R 483 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 332222 123344778777666667899999999999998865 78899999999999999999999999988776 5
Q ss_pred CChhHHHH
Q 005628 490 VSPSTADV 497 (687)
Q Consensus 490 ~~p~t~~~ 497 (687)
+...||-.
T Consensus 484 P~~pt~~~ 491 (517)
T PRK10153 484 PGENTLYW 491 (517)
T ss_pred CCCchHHH
Confidence 56557644
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.22 Score=39.24 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=27.8
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
+.|++++|.++|+++..... -|...+-.+..+|.+.|++++|..+++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44556666666666554321 14444555566666666666666666555543
|
... |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.36 E-value=7.1 Score=43.57 Aligned_cols=244 Identities=12% Similarity=0.015 Sum_probs=130.4
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
+.......-+-|-..+++.+.+++++...+. .++....+..=|..+... | +...+|.+. ..|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el----------~---~~n~Lf~ls----h~L 304 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYEL----------G---KSNKLFLLS----HKL 304 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHh----------c---ccchHHHHH----HHH
Confidence 3355556667777889999999999998754 244555555566655532 2 233334211 333
Q ss_pred cccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHH--hcCCCCCccccc------------------hhhHh
Q 005628 270 GDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKE--NLGQFSNGHMKL------------------NSQLL 328 (687)
Q Consensus 270 ~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~--~~g~~Pd~~ty~------------------~~~li 328 (687)
.+ ..+ ..++|=++=-- |-..|+..+|.+.|..-. ....-|--+.|. ...++
T Consensus 305 V~--~yP~~a~sW~aVg~Y------Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~ 376 (611)
T KOG1173|consen 305 VD--LYPSKALSWFAVGCY------YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM 376 (611)
T ss_pred HH--hCCCCCcchhhHHHH------HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence 33 233 45555444333 445567777777776432 222222211111 11222
Q ss_pred hccc----------------cccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC--CCCC----
Q 005628 329 DGRS----------------NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EVPM---- 385 (687)
Q Consensus 329 ~g~~----------------~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi~p---- 385 (687)
.|+- +.|+.+|.+.. ++-| |...++. +=-.....+.+.+|...|+.-... .+-+
T Consensus 377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~--ai~P~Dplv~~E-lgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~ 453 (611)
T KOG1173|consen 377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL--AIAPSDPLVLHE-LGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIF 453 (611)
T ss_pred cCCcchHHHHHHHHHHhccHHHHHHHHHHHH--hcCCCcchhhhh-hhheeehHhhhHHHHHHHHHHHHHhhhccccccc
Confidence 2221 22333333222 2333 3444444 322233456677777777665521 1111
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
-..+++.|=..|-+.+..++|+..++.-... .+-|..+|+++=-.|...|+++.|.+.|...+. +.||..+-..|+.
T Consensus 454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 454 WEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLK 530 (611)
T ss_pred hhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHH
Confidence 1234566666677777777777777765554 334666777777777777777777777776543 5677666666665
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=3 Score=49.10 Aligned_cols=121 Identities=12% Similarity=0.079 Sum_probs=96.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
..+.|++++|..+++...+. .||.... -..+...+.+.+++++|+.
T Consensus 96 ~~~~g~~~ea~~~l~~~~~~--~Pd~~~a--------------------------------~~~~a~~L~~~~~~eeA~~ 141 (694)
T PRK15179 96 LEAAHRSDEGLAVWRGIHQR--FPDSSEA--------------------------------FILMLRGVKRQQGIEAGRA 141 (694)
T ss_pred HHHcCCcHHHHHHHHHHHhh--CCCcHHH--------------------------------HHHHHHHHHHhccHHHHHH
Confidence 66789999999999877664 3444332 2337788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.+++..... +-+....+.+-.++.+.|+.++|.++|++....+ |+ ..++..+=..+-+.|+.++|...|+...+.
T Consensus 142 ~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~--p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 142 EIELYFSGG-SSSAREILLEAKSWDEIGQSEQADACFERLSRQH--PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999998764 2345667778888999999999999999998732 44 677888888889999999999999988664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.5 Score=41.69 Aligned_cols=56 Identities=13% Similarity=0.116 Sum_probs=27.6
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (687)
..+...|++++|...|++.......| ...+|..+-..+...|+.++|+..++....
T Consensus 43 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444555556665555554332111 123455555555555555555555555443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.37 Score=50.18 Aligned_cols=97 Identities=12% Similarity=0.027 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
.+|..+++..-+.+.++.|..+|.+..+.+ +..+++...++|..+ ..++.+.|.+||+...+. +.-+...|...|+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 578999999999999999999999998653 556666666666544 347778899999999876 66688889999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+.++.+.|..+|++....
T Consensus 80 l~~~~d~~~aR~lfer~i~~ 99 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS 99 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT
T ss_pred HHHhCcHHHHHHHHHHHHHh
Confidence 99999999999999998876
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=93.11 E-value=0.48 Score=43.80 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=32.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t 459 (687)
...++..+...|++++|..+...+.... +-|...|-.+|.+|...|+..+|.++|+.+.. -|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444445555555666555555555431 22445555556666666665555555555422 255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.10 E-value=20 Score=41.02 Aligned_cols=323 Identities=11% Similarity=0.069 Sum_probs=167.1
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccc
Q 005628 188 RSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG--QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMN 265 (687)
Q Consensus 188 ~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd--~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~ 265 (687)
.-+-..|-.=-.+|-+.|.+-.+..+....+.-|+.-. -.||+.--..|. +.+.++-|..+|...
T Consensus 476 ~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~----------k~~~~~carAVya~a--- 542 (913)
T KOG0495|consen 476 EINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCE----------KRPAIECARAVYAHA--- 542 (913)
T ss_pred eecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHH----------hcchHHHHHHHHHHH---
Confidence 33336777777788888888888888887777666522 356777777777 666677666666410
Q ss_pred cccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcc-------ccccCC
Q 005628 266 STELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR-------SNLERG 337 (687)
Q Consensus 266 s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~-------~~~a~~ 337 (687)
+. -++ +...|.-.... --..|..+.-..+|++....- |-.-.+ .|+-+- ...|+.
T Consensus 543 ---lq---vfp~k~slWlra~~~------ek~hgt~Esl~Allqkav~~~--pkae~l---wlM~ake~w~agdv~~ar~ 605 (913)
T KOG0495|consen 543 ---LQ---VFPCKKSLWLRAAMF------EKSHGTRESLEALLQKAVEQC--PKAEIL---WLMYAKEKWKAGDVPAARV 605 (913)
T ss_pred ---Hh---hccchhHHHHHHHHH------HHhcCcHHHHHHHHHHHHHhC--CcchhH---HHHHHHHHHhcCCcHHHHH
Confidence 10 111 34445555444 445666666666666655431 221111 111110 011111
Q ss_pred CcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 338 PDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 338 ~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
++...... .| +...|-. -+.--..+..+++|..+|.+-.. ..|+.-.|.--+...--.+..++|.+++++..+.
T Consensus 606 il~~af~~--~pnseeiwla-avKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 606 ILDQAFEA--NPNSEEIWLA-AVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHHHHHh--CCCcHHHHHH-HHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 11111110 11 1122222 34445556666666666666554 3355555554444444556666676666655443
Q ss_pred CCCCCcch-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-H
Q 005628 417 GINPRLRS-YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-T 494 (687)
Q Consensus 417 g~~Pd~~t-y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t 494 (687)
-|+-.- |-.+=..+-..++++.|.+.|..=.+. ++-.+..|-.|-+.=-+.|.+.+|..+|++-+-+ .|... .
T Consensus 681 --fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk--NPk~~~l 755 (913)
T KOG0495|consen 681 --FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK--NPKNALL 755 (913)
T ss_pred --CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc--CCCcchh
Confidence 233322 222222333344444444444332211 2333445656666667788888999999988777 44444 4
Q ss_pred H-HHHHHHHcCHHHHHhhcccchhhHHHHHhh---hcCCcccccccCCCCccEEEeeeecCCCcccc
Q 005628 495 A-DVIAKWFNSKEAARLGKKKWNESLIKDTME---NKGGGWHGLGWLGKGKWIVSHTTVGGDALCKC 557 (687)
Q Consensus 495 ~-~~I~~~~~~~~~~~a~~~~~~~~~v~ea~~---~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~ 557 (687)
| ..|..-.+.|....|. -.+..|+. ..|-+|-+-.|.--.|..-|- ++..--.|..
T Consensus 756 wle~Ir~ElR~gn~~~a~------~lmakALQecp~sg~LWaEaI~le~~~~rkTk-s~DALkkce~ 815 (913)
T KOG0495|consen 756 WLESIRMELRAGNKEQAE------LLMAKALQECPSSGLLWAEAIWLEPRPQRKTK-SIDALKKCEH 815 (913)
T ss_pred HHHHHHHHHHcCCHHHHH------HHHHHHHHhCCccchhHHHHHHhccCcccchH-HHHHHHhccC
Confidence 4 3366656665544443 23334433 446677777777667776555 3333334444
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.41 Score=37.60 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=27.2
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.|++++|.++|+.+....-. +...+-.|..+|.+.|++++|..+|+++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445555555555555543211 4444445555555566666666555555555
|
... |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.88 E-value=9.8 Score=42.76 Aligned_cols=137 Identities=12% Similarity=0.191 Sum_probs=90.2
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHH--------HHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVK--------RMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~--------~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.....|.+++...-+....-..++.=+++......|+++.|.+++. .+.+.+..|-++. +++.-+.+.++
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~--aiv~l~~~~~~ 432 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVG--AIVALYYKIKD 432 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHH--HHHHHHHhccC
Confidence 3466777777766654333334556666777888999999999999 6666677676554 56677788888
Q ss_pred hHHHHHHHHHHHHC--CCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHcCHH
Q 005628 438 VDKACSVEEHMLEH--GVYPEEPELEALL----RVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKE 506 (687)
Q Consensus 438 ~~~A~~l~~~M~~~--gv~pd~~ty~~Li----~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~ 506 (687)
.+.|-.++.+.... .-.+......+++ ..-.+.|..++|..+++++... .+... ....+.+++.-..
T Consensus 433 ~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~d~ 507 (652)
T KOG2376|consen 433 NDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARLDP 507 (652)
T ss_pred CccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhcCH
Confidence 88888888776442 1112223333333 3336789999999999999986 22222 3445777776654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.72 E-value=6.3 Score=39.92 Aligned_cols=131 Identities=11% Similarity=0.031 Sum_probs=98.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-----H
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-----F 432 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-----~ 432 (687)
++..+.-.|.+.-...++++..+...+-+......|.+.-.+.||.+.|...|+...+..-+.|..+++.++.. |
T Consensus 183 ~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~ 262 (366)
T KOG2796|consen 183 MANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLH 262 (366)
T ss_pred HHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhhe
Confidence 55555556677778888999888877788899999999999999999999999988876556677777777653 3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.-.++...|...|.++....-. |.+.-| +|+..| .|+..+|.+.+..|... -|.|.
T Consensus 263 lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllY--lg~l~DAiK~~e~~~~~--~P~~~ 320 (366)
T KOG2796|consen 263 LGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLY--LGKLKDALKQLEAMVQQ--DPRHY 320 (366)
T ss_pred ecccchHHHHHHHhhccccCCC-chhhhchHHHHHHH--HHHHHHHHHHHHHHhcc--CCccc
Confidence 3457888888888887665322 222222 444444 58899999999999998 55555
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=92.49 E-value=2.2 Score=46.16 Aligned_cols=90 Identities=12% Similarity=0.024 Sum_probs=74.9
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
..+...|++++|+++|++..... .-+...|..+-.+|.+.|++++|...++...+.. ..+...|..+-.+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 45567899999999999998753 2345677778889999999999999999998753 235677888888999999999
Q ss_pred HHHHHHHHHHhc
Q 005628 475 RVYYLLHKLRTS 486 (687)
Q Consensus 475 ~A~~ll~~M~~~ 486 (687)
+|...|++....
T Consensus 88 eA~~~~~~al~l 99 (356)
T PLN03088 88 TAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHh
Confidence 999999998877
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=92.35 E-value=2.8 Score=43.69 Aligned_cols=106 Identities=15% Similarity=0.177 Sum_probs=57.3
Q ss_pred HHhh-ccHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----CCcch-HHHHH
Q 005628 362 DAKK-YAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-----PRLRS-YGPAL 429 (687)
Q Consensus 362 ~~k~-g~~~~A~~lf~~M~~----~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-----Pd~~t-y~~lI 429 (687)
|-.. |++++|.+.|++-.+ .|-.- -..++.-+...+.+.|++++|.++|++....-.. .++.. |-..+
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~ 203 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAI 203 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHH
Confidence 3344 566777776665543 22111 1235566677788888888888888887654322 22221 22233
Q ss_pred HHHHhCCChHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLEH--GVYPE--EPELEALLRVS 467 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~--gv~pd--~~ty~~Li~~~ 467 (687)
-++...||...|.+.|++.... ++..+ ......||.+|
T Consensus 204 l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 204 LCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 3555568888888888887644 22222 33445566664
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=92.07 E-value=2.5 Score=40.01 Aligned_cols=111 Identities=17% Similarity=0.078 Sum_probs=75.3
Q ss_pred HHHHHHHHH-hCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 371 GFEIYEKMC-LDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP--RLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 371 A~~lf~~M~-~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P--d~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
+...+..+. ..+-.--...|..+...+...|++++|...|+......-.| ...+|..+-..+...|+.++|.+.++.
T Consensus 18 ~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~ 97 (168)
T CHL00033 18 VADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQ 97 (168)
T ss_pred chhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444442 23322335667778888888999999999999887653222 234788888899999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHH-------hcCChHHHHHHHHH
Q 005628 448 MLEHGVYPEEPELEALLRVSV-------EAGKGDRVYYLLHK 482 (687)
Q Consensus 448 M~~~gv~pd~~ty~~Li~~~~-------~~g~~~~A~~ll~~ 482 (687)
..... +....++..+...+. ..|++++|...+++
T Consensus 98 Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 98 ALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 87652 223455666666666 77787766555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.97 E-value=17 Score=40.04 Aligned_cols=121 Identities=12% Similarity=0.059 Sum_probs=86.0
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
.-.+++++|..=|++-..-. +-++..|--+--+.-+.+++++++..|++.+++ ++--...||-.-..+...+++++|.
T Consensus 405 flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~ 482 (606)
T KOG0547|consen 405 FLLQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAV 482 (606)
T ss_pred HHHHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHH
Confidence 34467888998888877642 124456666666667889999999999998876 5555678888889999999999999
Q ss_pred HHHHHHHHC-----CCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 443 SVEEHMLEH-----GVYPEEPE--LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 443 ~l~~~M~~~-----gv~pd~~t--y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.|+...+- ++..+..+ --+++-.= -.+++..|..|+++-.+-
T Consensus 483 k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~ 532 (606)
T KOG0547|consen 483 KQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL 532 (606)
T ss_pred HHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc
Confidence 999987653 22222222 22222221 338899999999987766
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.93 E-value=18 Score=43.34 Aligned_cols=249 Identities=9% Similarity=0.039 Sum_probs=143.7
Q ss_pred hhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcccCCcccCC
Q 005628 171 KVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIKLGQYHYNVLLYLCSSAAVGVVKPAK 248 (687)
Q Consensus 171 ~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~--Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k 248 (687)
++.++.+..++.... .|+ .-+..+.++..++-+.+-+++++...-. -+.-+.-.-|.||-...++.
T Consensus 968 qLiDqVv~tal~E~~--dPe--~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad-------- 1035 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQ--DPE--EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKAD-------- 1035 (1666)
T ss_pred HHHHHHHHhcCCccC--ChH--HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcC--------
Confidence 455555555443222 333 4456678899999999999999998733 22334444555555444322
Q ss_pred CCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHh
Q 005628 249 SGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLL 328 (687)
Q Consensus 249 ~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li 328 (687)
..+..+... -.++.+.++. -++ ...++-+++|..+|+...-.+ ...+ .||
T Consensus 1036 ---~trVm~YI~--------rLdnyDa~~i--a~i----------ai~~~LyEEAF~ifkkf~~n~-----~A~~--VLi 1085 (1666)
T KOG0985|consen 1036 ---RTRVMEYIN--------RLDNYDAPDI--AEI----------AIENQLYEEAFAIFKKFDMNV-----SAIQ--VLI 1085 (1666)
T ss_pred ---hHHHHHHHH--------HhccCCchhH--HHH----------HhhhhHHHHHHHHHHHhcccH-----HHHH--HHH
Confidence 112222221 0111111111 011 334556778888877543211 1111 222
Q ss_pred hccc--cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005628 329 DGRS--NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (687)
Q Consensus 329 ~g~~--~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A 406 (687)
+-.. +.|... ..+--+| .+|+. +-.+-.+.|.+.+|.+-|-+. -|...|.-+|+...+.|.+++-
T Consensus 1086 e~i~~ldRA~ef----Ae~~n~p--~vWsq-lakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edL 1152 (1666)
T KOG0985|consen 1086 ENIGSLDRAYEF----AERCNEP--AVWSQ-LAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDL 1152 (1666)
T ss_pred HHhhhHHHHHHH----HHhhCCh--HHHHH-HHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHH
Confidence 2111 011000 0011112 24555 767777888888888777553 3678899999999999999999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
.+.+...++..-.|.+. +.||-+|++.+++.+-.++. .-||..-...+=+-|...|.++.|.-++...
T Consensus 1153 v~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1153 VKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 88887777776666655 57899999999887765554 3467666666667777777777666665544
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.88 E-value=1.7 Score=46.00 Aligned_cols=104 Identities=9% Similarity=-0.027 Sum_probs=82.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.|.-+...|....|.++-.+.+ .||..-|-..|++|+..++|++-..+... . -..+-|-+++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCCC
Confidence 4556667888888888877664 48999999999999999999987776432 1 234889999999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
..+|......+ ++..-+..|.++|++.+|.+.--
T Consensus 253 ~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 253 KKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 99999888772 33667888899999998876533
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.80 E-value=3.3 Score=45.16 Aligned_cols=119 Identities=14% Similarity=0.150 Sum_probs=93.8
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
=-..|++..|.++|+.-.+ ..||...|++.|+.=.+-..++.|..+++...- +.|++.+|---..-=-++|.+..|
T Consensus 151 EE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a 226 (677)
T KOG1915|consen 151 EEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA 226 (677)
T ss_pred HHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence 3456788999999987664 579999999999999999999999999998875 459999998888888899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVS----VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~----~~~g~~~~A~~ll~~M~~~ 486 (687)
..+|+...+. .-|...-..|+-++ .++..++.|.-++..-.++
T Consensus 227 R~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~ 273 (677)
T KOG1915|consen 227 RSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH 273 (677)
T ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999887653 12344445555555 4566778888888877776
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.25 E-value=32 Score=39.39 Aligned_cols=117 Identities=11% Similarity=0.008 Sum_probs=52.1
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHH
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
|..++-..+|++.... ++-..+-|-....-+-..|++..|..++....+..- -+...|-..+.-...+.+++.|..+|
T Consensus 564 gt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~en~e~eraR~ll 641 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFENDELERARDLL 641 (913)
T ss_pred CcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHH
Confidence 4444444444444433 222333444444444444555555555544443311 12334444444444555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..... ..|+..+|.--+...--.+..++|.+++++-...
T Consensus 642 akar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~ 680 (913)
T KOG0495|consen 642 AKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKS 680 (913)
T ss_pred HHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh
Confidence 44433 2344444444444444444555555555444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.06 E-value=16 Score=41.22 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=84.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHH--HHHHH--h
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA--LSVFC--N 434 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l--I~~~~--~ 434 (687)
|+.+.+.|++++|.+..+++...+ +-|...+-.-+-++.+.+++++|+.+.+. .+ -..+++.. =.+|| +
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~---~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NG---ALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cc---hhhhcchhhHHHHHHHHH
Confidence 577888999999999999998766 45566777777888999999999966543 22 11223333 45555 6
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+..++|...++ |+.++.. +...=-..+-+.|++++|+.+++.+..+
T Consensus 92 lnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 789999998887 4444433 4444456678899999999999999776
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.95 E-value=5.1 Score=44.46 Aligned_cols=125 Identities=15% Similarity=0.179 Sum_probs=90.8
Q ss_pred HHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 370 RGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 370 ~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
...++++++... .+.|+ .+|..+|+.--+..-+..|..+|.+..+.+..+ +++.++++|..+|. ++-+-|.++|+-
T Consensus 349 ~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL 426 (656)
T KOG1914|consen 349 KVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL 426 (656)
T ss_pred hhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence 334444444443 23343 467777777778888899999999999888777 88999999998886 677889999986
Q ss_pred HHHCCCCCCHHHH-HHHHHHHHhcCChHHHHHHHHHHHhccCCCChh----HHHHHHH
Q 005628 448 MLEHGVYPEEPEL-EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS----TADVIAK 500 (687)
Q Consensus 448 M~~~gv~pd~~ty-~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~----t~~~I~~ 500 (687)
=..+ -+|...| ...++.+...++-..|..||++...+ +++++ .|+.+..
T Consensus 427 GLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s--~l~~~ks~~Iw~r~l~ 480 (656)
T KOG1914|consen 427 GLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS--VLSADKSKEIWDRMLE 480 (656)
T ss_pred HHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc--cCChhhhHHHHHHHHH
Confidence 4433 1343333 56788888899999999999999988 77766 5655333
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=90.92 E-value=6.1 Score=40.68 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc----chHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----RSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPEEPELE 461 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd~~ty~ 461 (687)
..|...+..+.+.|++++|...|+.+... .|+. ..+--+-..|...|+.++|...|+.+.+.-- ......+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555555567777777777777654 2443 2444555667777888888888877765311 11122333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.+...+...|+.++|..+|+++... .+...
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~--yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK--YPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CcCCH
Confidence 3445566778888888888888777 44433
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=12 Score=38.05 Aligned_cols=158 Identities=8% Similarity=-0.000 Sum_probs=96.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++.... -|+.. +. ..+ . -.+..+|.+.++.++|..
T Consensus 42 ~~~~g~y~~Ai~~f~~l~~~--yP~s~-~a----~~a----------------------~--l~la~ayy~~~~y~~A~~ 90 (243)
T PRK10866 42 KLQDGNWKQAITQLEALDNR--YPFGP-YS----QQV----------------------Q--LDLIYAYYKNADLPLAQA 90 (243)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCCh-HH----HHH----------------------H--HHHHHHHHhcCCHHHHHH
Confidence 55689999999999998874 33331 11 000 0 015678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH--c---------------CC---hHHHHHHHHHHHHcCCCCCcc------hHH-
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMS--M---------------GD---GDMAFDMVKRMKSLGINPRLR------SYG- 426 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~--~---------------g~---~~~A~~l~~~M~~~g~~Pd~~------ty~- 426 (687)
.|++..+....-..+-|.-.+.|.+. . .+ ..+|+..|+.+.+. -|+.. ..-
T Consensus 91 ~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~ya~~A~~rl~ 168 (243)
T PRK10866 91 AIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQYTTDATKRLV 168 (243)
T ss_pred HHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999886544334456666666552 1 12 23566666666554 24331 111
Q ss_pred -----------HHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 427 -----------PALSVFCNNGDVDKACSVEEHMLEH--GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 427 -----------~lI~~~~~~g~~~~A~~l~~~M~~~--gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
.+..-|.+.|....|..=|+.+.++ +........-.|+.+|.+.|..++|.....-+.
T Consensus 169 ~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 169 FLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 1223366677777777777777665 344445556667777777777777776665544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=90.70 E-value=1.2 Score=34.72 Aligned_cols=56 Identities=18% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+.+.|++++|.++|+..++.. .-+...+..+-..+...|++++|..+|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34556666777777777666654 114455555666666677777777776666554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=90.41 E-value=4.7 Score=37.11 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=51.1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc---cCCCChh
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS---VRKVSPS 493 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~---~~g~~p~ 493 (687)
....++..+...|+.++|..+.+.+.... +.|...|..||.+|...|+..+|.++|+++... ..|+.|+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 34567777888999999999999998764 448889999999999999999999999988542 2255555
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=90.24 E-value=6.8 Score=35.14 Aligned_cols=103 Identities=12% Similarity=0.052 Sum_probs=62.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---cchH-HHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSY-GPALSVFC 433 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty-~~lI~~~~ 433 (687)
.++-..|+.++|..+|++-...|.... ...+-.+-..+-..|++++|..+|++..... |+ .... ..+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 345567788888888888887776544 2334445556667788888888888766541 43 1111 11223556
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
..|+.++|.+.+-.... ++...|.--|..|+
T Consensus 87 ~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 67888888777655432 33445665555554
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=90.24 E-value=32 Score=39.25 Aligned_cols=271 Identities=10% Similarity=-0.018 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-i~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
..|-...-+.--.|+...|..+.++..+.- -.|+...|.-....+-+.. + -.+.|..+.|.+.+. +.
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~---i-~~E~g~~q~ale~L~--------~~ 211 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ---I-LIEAGSLQKALEHLL--------DN 211 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH---H-HHHcccHHHHHHHHH--------hh
Confidence 678888888888899999999999998765 3677777766554444211 0 005666777777663 11
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccc------hh-------hHhhcccc----
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKL------NS-------QLLDGRSN---- 333 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~------~~-------~li~g~~~---- 333 (687)
+. .+.|.+.|-- ....-+.+.+++++|..++..+..+ .||.+-|. .+ .+-..|..
T Consensus 212 e~-~i~Dkla~~e-----~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~ 283 (700)
T KOG1156|consen 212 EK-QIVDKLAFEE-----TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK 283 (700)
T ss_pred hh-HHHHHHHHhh-----hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc
Confidence 11 1112222100 0011266778889999998888877 48887776 10 00011110
Q ss_pred ----------------------ccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHH----HHHHHHHHHHhCCC----
Q 005628 334 ----------------------LERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQ----RGFEIYEKMCLDEV---- 383 (687)
Q Consensus 334 ----------------------~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~----~A~~lf~~M~~~gi---- 383 (687)
.-..++..+.++|+.+-... +.+-|-.-...+ -+..+...|...|.
T Consensus 284 y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d----l~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~ 359 (700)
T KOG1156|consen 284 YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD----LRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFL 359 (700)
T ss_pred CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh----hHHHHhchhHhHHHHHHHHHHHhhcccccCCCcc
Confidence 00113445556666543222 222222111111 12222222222211
Q ss_pred ------CCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 005628 384 ------PMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGDVDKACSVEEHMLEHGVY 454 (687)
Q Consensus 384 ------~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~ 454 (687)
+|....|+ -++..|-+.|+++.|...++.-..+ .|+.+ -|-.=-..++.+|++++|...+++..+-. .
T Consensus 360 D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~ 436 (700)
T KOG1156|consen 360 DDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-T 436 (700)
T ss_pred cccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-c
Confidence 45655444 4667788899999999999976543 45543 34333467888999999999999987653 3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCC
Q 005628 455 PEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRK 489 (687)
Q Consensus 455 pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g 489 (687)
||...-.--..-..++.+.++|.++.......+.+
T Consensus 437 aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~ 471 (700)
T KOG1156|consen 437 ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFG 471 (700)
T ss_pred hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccc
Confidence 45554445555567889999999999999888433
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.23 E-value=8.1 Score=39.08 Aligned_cols=129 Identities=16% Similarity=0.114 Sum_probs=96.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+--.|+-+.+..+...... ...-|....+.++....+.|++.+|...|.+.... -.+|...|+.+=-+|-+.|+++
T Consensus 74 ~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~ 151 (257)
T COG5010 74 TALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFD 151 (257)
T ss_pred HHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChh
Confidence 344445555555555444332 12345556677999999999999999999997654 5689999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
+|..-|....+--. -+...+|-|--.|.-.|+.+.|..++..-... +..++
T Consensus 152 ~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~--~~ad~ 202 (257)
T COG5010 152 EARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLS--PAADS 202 (257)
T ss_pred HHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC--CCCch
Confidence 99999988877422 23455666777778889999999999998887 55444
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=90.13 E-value=1.2 Score=34.59 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=38.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
..+.+.|++++|.++|++..+.. +-+...+..+-..+...|++++|...|++..+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45667777778888887777765 225566777777777777777777777776543
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=90.11 E-value=8.2 Score=35.22 Aligned_cols=119 Identities=8% Similarity=-0.009 Sum_probs=84.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+|..+-..+.......+++.+...+. .+...+|.+|..|++.. ..+..+.+.. .++.+...-++..|-+.+.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 78888888899999999999998874 78889999999999874 3444455542 2455666678888989999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHhccCCCChhHHHHHH
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEA-GKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~-g~~~~A~~ll~~M~~~~~g~~p~t~~~I~ 499 (687)
.+++..++..+.. |...++.+... ++++.|.+++.+ .-.|+.|..+.
T Consensus 85 ~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~ 132 (140)
T smart00299 85 YEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVL 132 (140)
T ss_pred HHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHH
Confidence 9899888887632 22333334444 778888887765 12455665533
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=89.67 E-value=11 Score=39.45 Aligned_cols=132 Identities=15% Similarity=0.193 Sum_probs=88.1
Q ss_pred ChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhh----ccHHHHHHH
Q 005628 299 RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK----YAFQRGFEI 374 (687)
Q Consensus 299 ~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~----g~~~~A~~l 374 (687)
.+++...+++.|.+.|+.-+..+|- .++ +|...+.. -...+|.++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~l-----aA~--------------------------~i~~~~~~~~~~~~~~ra~~i 125 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYL-----AAL--------------------------IILEEEEKEDYDEIIQRAKEI 125 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHH-----HHH--------------------------HHHHhcccccHHHHHHHHHHH
Confidence 3567788889999999888887664 111 11111111 246789999
Q ss_pred HHHHHhCCC---CCCHHHHHHHHHHHHHcCCh----HHHHHHHHHHHHcCCCCCcc-hHHHHHHHHHhCCC---hHHHHH
Q 005628 375 YEKMCLDEV---PMNEASLTAVGRMAMSMGDG----DMAFDMVKRMKSLGINPRLR-SYGPALSVFCNNGD---VDKACS 443 (687)
Q Consensus 375 f~~M~~~gi---~pd~~tyn~LI~~~~~~g~~----~~A~~l~~~M~~~g~~Pd~~-ty~~lI~~~~~~g~---~~~A~~ 443 (687)
|+.|++... .++-.++.+|+.. ...++ +.+..+++.+...|+..+-. -+-+-|-+++..-. +..+.+
T Consensus 126 y~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~ 203 (297)
T PF13170_consen 126 YKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIE 203 (297)
T ss_pred HHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHH
Confidence 999998753 3677888888766 33443 46778888888888765432 34444444444322 446889
Q ss_pred HHHHHHHCCCCCCHHHHHHH
Q 005628 444 VEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~L 463 (687)
+++.+.+.|+++....|..+
T Consensus 204 l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 204 LYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHcCCccccccccHH
Confidence 99999999999888877644
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=89.53 E-value=32 Score=36.58 Aligned_cols=215 Identities=11% Similarity=0.007 Sum_probs=124.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCC-chhhhhhhhhhccccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~~~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~ 270 (687)
++..+-..+...++.++|+.++++++.. .|+.+ .|+.-=..+. +.| .++++++.++ ++.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~----------~L~~~l~eeL~~~~-------~~i 99 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLE----------ALDADLEEELDFAE-------DVA 99 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHH----------HcchhHHHHHHHHH-------HHH
Confidence 3344444456677889999999998864 34443 2332222333 333 4567777764 222
Q ss_pred ccCCCCCccchhccccccccccccccCCC--hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYR--FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~--~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (687)
.. .-++-..|+..--. +.+.|. .+++..+++.|.+.. ..
T Consensus 100 ~~-npknyqaW~~R~~~------l~~l~~~~~~~el~~~~kal~~d----pk---------------------------- 140 (320)
T PLN02789 100 ED-NPKNYQIWHHRRWL------AEKLGPDAANKELEFTRKILSLD----AK---------------------------- 140 (320)
T ss_pred HH-CCcchHHhHHHHHH------HHHcCchhhHHHHHHHHHHHHhC----cc----------------------------
Confidence 21 12233345532222 222232 255677776666542 11
Q ss_pred CChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc---CCh----HHHHHHHHHHHHcCCCCC
Q 005628 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM---GDG----DMAFDMVKRMKSLGINPR 421 (687)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~---g~~----~~A~~l~~~M~~~g~~Pd 421 (687)
|...|+. .--.+.+.|+++++++.++++.+..+. |...|+-.--.+.+. |.. +++++....+... .+-|
T Consensus 141 -Ny~AW~~-R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~-~P~N 216 (320)
T PLN02789 141 -NYHAWSH-RQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA-NPRN 216 (320)
T ss_pred -cHHHHHH-HHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh-CCCC
Confidence 2223444 444555667899999999999987643 556676665555554 222 4566666555544 2246
Q ss_pred cchHHHHHHHHHhC----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 422 LRSYGPALSVFCNN----GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 422 ~~ty~~lI~~~~~~----g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
...|+-+-..+... +...+|.+++.+....+ ..+......|++.|+..
T Consensus 217 ~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 217 ESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred cCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 67788888777773 34466888888876643 33667788899999864
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.15 E-value=3 Score=48.31 Aligned_cols=224 Identities=12% Similarity=-0.008 Sum_probs=118.6
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCC--------CCHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQR-EGIK--------LGQYHYN 230 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~-~Gi~--------pd~~tyn 230 (687)
+...|+++.|++-...+ +.. ..|..|-..|.+-.+++-|.-.+..|.. +|.+ |+...
T Consensus 738 yvtiG~MD~AfksI~~I------kS~------~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~e-- 803 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFI------KSD------SVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDE-- 803 (1416)
T ss_pred EEEeccHHHHHHHHHHH------hhh------HHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchh--
Confidence 34567888888888777 233 8999999999999999999888888863 2321 22110
Q ss_pred HHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
.=...++- ..|.+++|..++. +-.+ |..|-+- |-..|.+++|.++-+.-
T Consensus 804 akvAvLAi---------eLgMlEeA~~lYr-------~ckR---------~DLlNKl------yQs~g~w~eA~eiAE~~ 852 (1416)
T KOG3617|consen 804 AKVAVLAI---------ELGMLEEALILYR-------QCKR---------YDLLNKL------YQSQGMWSEAFEIAETK 852 (1416)
T ss_pred hHHHHHHH---------HHhhHHHHHHHHH-------HHHH---------HHHHHHH------HHhcccHHHHHHHHhhc
Confidence 00111110 3455666666663 1111 1222222 44455555555554332
Q ss_pred HhcCCCCCccccchhhHhhccc-------------cccCCCcch----------hcccCCCCChhhhHHHHHHHHHhhcc
Q 005628 311 ENLGQFSNGHMKLNSQLLDGRS-------------NLERGPDDQ----------SRKKDWSIDNQDADEIRLSEDAKKYA 367 (687)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~-------------~~a~~~~~~----------m~~~g~~pd~~tyn~~lI~~~~k~g~ 367 (687)
.+-.++-.-.-|. .-+++.. ..|..++.. -+.+.-.|....|.. ..+-..|+
T Consensus 853 DRiHLr~Tyy~yA--~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWg---qYlES~Ge 927 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYA--KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWG---QYLESVGE 927 (1416)
T ss_pred cceehhhhHHHHH--HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHH---HHHhcccc
Confidence 2222221111111 1111111 001111111 111222334444444 23335688
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
++.|+.+|...++ |-++++..|-.|+.++|-++-++-. |....-.|-..|-..|++.+|..+|-.
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 8888888887654 5667777777888888877776532 333444556667777777777776655
Q ss_pred H
Q 005628 448 M 448 (687)
Q Consensus 448 M 448 (687)
.
T Consensus 993 A 993 (1416)
T KOG3617|consen 993 A 993 (1416)
T ss_pred H
Confidence 3
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=89.04 E-value=37 Score=36.77 Aligned_cols=258 Identities=9% Similarity=-0.028 Sum_probs=130.4
Q ss_pred HHHHHHHH--hcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 195 RVELDMCS--KRGDVMGAIRLYDKAQRE-GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 195 n~lI~~~~--k~g~~~~A~~lf~~M~~~-Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..-|.+++ -.++-..|..++-.+... -++-|++....+-+.+. ..|+.++|...|.. ..|.+
T Consensus 198 s~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~----------~~Gdn~~a~~~Fe~-----~~~~d 262 (564)
T KOG1174|consen 198 SKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLY----------YNGDYFQAEDIFSS-----TLCAN 262 (564)
T ss_pred HHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhh----------hhcCchHHHHHHHH-----HhhCC
Confidence 33344443 345666666666666543 46667888888888888 88999999999951 12222
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc----cccCCCcchhcccCC
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS----NLERGPDDQSRKKDW 347 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~----~~a~~~~~~m~~~g~ 347 (687)
-..+...-.|..| +.+.|++++...+...+.... -.|-. ...++++- +.++..+ ....+.+
T Consensus 263 py~i~~MD~Ya~L---------L~~eg~~e~~~~L~~~Lf~~~----~~ta~-~wfV~~~~l~~~K~~~rAL-~~~eK~I 327 (564)
T KOG1174|consen 263 PDNVEAMDLYAVL---------LGQEGGCEQDSALMDYLFAKV----KYTAS-HWFVHAQLLYDEKKFERAL-NFVEKCI 327 (564)
T ss_pred hhhhhhHHHHHHH---------HHhccCHhhHHHHHHHHHhhh----hcchh-hhhhhhhhhhhhhhHHHHH-HHHHHHh
Confidence 2111111115555 456677777666666554321 00000 01111111 1111000 0011112
Q ss_pred CCChhhhHHHHH--HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 348 SIDNQDADEIRL--SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 348 ~pd~~tyn~~lI--~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
..|.-..-..|+ ..+...++.++|.=-|+..+.-. +-+..+|--|+..|-..|++.||.-+-++-.+. +.-+..+.
T Consensus 328 ~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~L 405 (564)
T KOG1174|consen 328 DSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSL 405 (564)
T ss_pred ccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhh
Confidence 222222223233 34556678888888887765431 236678888888888888888887665543322 11222332
Q ss_pred HHH-HHHHH-hCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 426 GPA-LSVFC-NNGDVDKACSVEEHMLEHGVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ~~l-I~~~~-~~g~~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+ -..|. .-.--++|.++++.-.. +.|+- ...+.+-.-+...|..+++..+++.-...
T Consensus 406 tL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 406 TLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred hhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 222 01111 11123555555554433 33442 23344555556677777777777766555
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=87.77 E-value=1.4 Score=35.68 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----C-CCCC-cchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL----G-INPR-LRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g-~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+|+.+-..|...|++++|+..|++.... | -.|+ ..+|+.+-..|...|+.++|.+.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4555555555555555555555544322 1 0122 334444555555555555555555443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=87.68 E-value=3.9 Score=32.39 Aligned_cols=55 Identities=16% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|.+.+++++|.++++.+...+ +.+...|...-..+.+.|++++|...|++..+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666665542 113444444555556666666666666666555
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=87.63 E-value=9.8 Score=34.12 Aligned_cols=89 Identities=20% Similarity=0.167 Sum_probs=65.3
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSV 468 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~~~~ 468 (687)
.++-..|+.++|..+|++-...|+... ...+-.+-+.+-..|+.++|..++++..... |+ ......+--++.
T Consensus 9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHH
Confidence 456678999999999999999887654 3455566678888999999999999887652 43 112222334667
Q ss_pred hcCChHHHHHHHHHHHh
Q 005628 469 EAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~ 485 (687)
..|+.++|...+-....
T Consensus 87 ~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALA 103 (120)
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88999999987765443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=87.32 E-value=62 Score=38.45 Aligned_cols=228 Identities=11% Similarity=0.040 Sum_probs=139.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccch
Q 005628 202 SKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQL 281 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ty 281 (687)
...+++..|++..+.+.+. -||. .|..++.|+... +.|+.++|..+++ ..... +..|..|-
T Consensus 20 ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~--------r~gk~~ea~~~Le-------~~~~~-~~~D~~tL 80 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLF--------RLGKGDEALKLLE-------ALYGL-KGTDDLTL 80 (932)
T ss_pred hhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHH--------HhcCchhHHHHHh-------hhccC-CCCchHHH
Confidence 4567899999999888754 2443 467777777743 6788999998874 22211 23388888
Q ss_pred hccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHH
Q 005628 282 DYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSE 361 (687)
Q Consensus 282 n~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~ 361 (687)
.++-.. |...++.++|..+++..... -|+.. ++- . +-.+
T Consensus 81 q~l~~~------y~d~~~~d~~~~~Ye~~~~~--~P~ee------ll~--------------------------~-lFma 119 (932)
T KOG2053|consen 81 QFLQNV------YRDLGKLDEAVHLYERANQK--YPSEE------LLY--------------------------H-LFMA 119 (932)
T ss_pred HHHHHH------HHHHhhhhHHHHHHHHHHhh--CCcHH------HHH--------------------------H-HHHH
Confidence 888888 99999999999999877654 24311 111 1 3345
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcC-CCCCcchHHHHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD----------GDMAFDMVKRMKSLG-INPRLRSYGPALS 430 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~----------~~~A~~l~~~M~~~g-~~Pd~~ty~~lI~ 430 (687)
|.+.+.+.+-.+.=-+|-+ ..+-+...|=++|+.+...-. +.-|.+.++.+.+.+ -.-...-.-.-+.
T Consensus 120 yvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~ 198 (932)
T KOG2053|consen 120 YVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL 198 (932)
T ss_pred HHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence 5565555433332222222 233344555555555544321 224666666666553 1111111122223
Q ss_pred HHHhCCChHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh
Q 005628 431 VFCNNGDVDKACSVE-EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP 492 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~-~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p 492 (687)
.+-..|+.++|++++ ....+.-..-+...-+--++.+...+++.+..++-.++..+ +.+.
T Consensus 199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k--~~Dd 259 (932)
T KOG2053|consen 199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK--GNDD 259 (932)
T ss_pred HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh--CCcc
Confidence 344568889999988 44444444556666677788888899999999988888888 5443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.96 E-value=38 Score=34.42 Aligned_cols=123 Identities=10% Similarity=0.034 Sum_probs=94.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~ 434 (687)
+.=+....|+.+.|...++++..+- |.. .-+.++. +-..|.+++|.++++.+.+.. +-|.++|--=|...-.
T Consensus 58 V~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~--lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 58 VFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAML--LEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHH--HHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3344456788899999999988763 332 2222221 334689999999999998875 5577888776666767
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|+--+|.+-+.+-.+. +.-|...|.-|-..|...|++++|.-.+++|.-.
T Consensus 133 ~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred cCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 78877888777776665 6779999999999999999999999999999877
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=86.88 E-value=9.5 Score=39.28 Aligned_cols=97 Identities=12% Similarity=0.109 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchH
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSY 425 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty 425 (687)
..|.. .+..+.+.|++++|...|+.+...-..-. ...+-.+-..|...|++++|...|+.+...- |+ ...+
T Consensus 144 ~~Y~~-A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P~s~~~~dAl 220 (263)
T PRK10803 144 TDYNA-AIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--PKSPKAADAM 220 (263)
T ss_pred HHHHH-HHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCcchhHHH
Confidence 34555 55555677999999999999997642211 2466778888999999999999999998651 33 2223
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
--+...+...|+.++|.++|+...+.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33445667899999999999988765
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=86.84 E-value=13 Score=38.98 Aligned_cols=70 Identities=14% Similarity=0.193 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC---Cccchhc
Q 005628 207 VMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD---NNGQLDY 283 (687)
Q Consensus 207 ~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~---d~~tyn~ 283 (687)
+.+.+.+++.|++.|++-+.++|-+..-...... .....-.+.+|..++ ++|+++..+- +.+.+.+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~----~~~~~~~~~ra~~iy-------~~mKk~H~fLTs~~D~~~a~ 146 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEE----KEDYDEIIQRAKEIY-------KEMKKKHPFLTSPEDYPFAA 146 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcc----cccHHHHHHHHHHHH-------HHHHHhCccccCccchhHHH
Confidence 4566789999999999999888877544444200 000112345666666 3666654433 5556666
Q ss_pred cccc
Q 005628 284 GSSP 287 (687)
Q Consensus 284 Li~~ 287 (687)
|+..
T Consensus 147 lLA~ 150 (297)
T PF13170_consen 147 LLAM 150 (297)
T ss_pred HHhc
Confidence 6555
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=86.68 E-value=24 Score=35.83 Aligned_cols=88 Identities=8% Similarity=-0.079 Sum_probs=57.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~~Pd~~ty~~lI~~~~~~ 435 (687)
+|.-|=......+|...+..++.. .-..-+ .+.+-|-+.|.+..|..=|+.+.+. +........-.++.+|-+.
T Consensus 150 li~~yP~S~ya~~A~~rl~~l~~~---la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~l 225 (243)
T PRK10866 150 LVRGYPNSQYTTDATKRLVFLKDR---LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQL 225 (243)
T ss_pred HHHHCcCChhHHHHHHHHHHHHHH---HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 566665555666666555554431 001111 4555688899999999999998875 3333334556788999999
Q ss_pred CChHHHHHHHHHHH
Q 005628 436 GDVDKACSVEEHML 449 (687)
Q Consensus 436 g~~~~A~~l~~~M~ 449 (687)
|..++|..+..-+.
T Consensus 226 g~~~~a~~~~~~l~ 239 (243)
T PRK10866 226 QLNAQADKVAKIIA 239 (243)
T ss_pred CChHHHHHHHHHHh
Confidence 99999988776553
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.40 E-value=47 Score=38.03 Aligned_cols=287 Identities=11% Similarity=0.006 Sum_probs=138.5
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH--HHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI--KLGQ--YHYNVLLY 234 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi--~pd~--~tyn~Ll~ 234 (687)
-+++.++.++|-+.+.....+..--....+.+-..|.-+-+-.+++-+.-..+.+=. ..+.|+ -+|. +.|++|-+
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvda-iiR~gi~rftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDA-IIRGGIRRFTDQLGFLWCSLAD 256 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHH-HHHhhcccCcHHHHHHHHHHHH
Confidence 455788888888888877543222222223344677777777777665554444322 223333 3554 46788888
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccc---hhccccccccccccccCCChhhHHHHHHHHH
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQ---LDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~t---yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (687)
-|. +.|.+++|.+++. |-+. .+.| |+.+-++ |.+-..-.-+. .|.
T Consensus 257 YYI----------r~g~~ekarDvye-------eai~-----~v~tvrDFt~ifd~------Ya~FEE~~~~~----~me 304 (835)
T KOG2047|consen 257 YYI----------RSGLFEKARDVYE-------EAIQ-----TVMTVRDFTQIFDA------YAQFEESCVAA----KME 304 (835)
T ss_pred HHH----------HhhhhHHHHHHHH-------HHHH-----hheehhhHHHHHHH------HHHHHHHHHHH----HHh
Confidence 888 7888888888885 2222 1122 3333333 22110000000 010
Q ss_pred ----hcCCCCCccccc-----hhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCC
Q 005628 312 ----NLGQFSNGHMKL-----NSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (687)
Q Consensus 312 ----~~g~~Pd~~ty~-----~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (687)
+.|-.-|.+... ...|++..- .+.+...-+.-..++.+|-. -+ -+..|+..+-...|.+....
T Consensus 305 ~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~----~~lNsVlLRQn~~nV~eW~k-RV--~l~e~~~~~~i~tyteAv~~- 376 (835)
T KOG2047|consen 305 LADEESGNEEDDVDLELHMARFESLMNRRP----LLLNSVLLRQNPHNVEEWHK-RV--KLYEGNAAEQINTYTEAVKT- 376 (835)
T ss_pred hhhhcccChhhhhhHHHHHHHHHHHHhccc----hHHHHHHHhcCCccHHHHHh-hh--hhhcCChHHHHHHHHHHHHc-
Confidence 000000111110 001111110 01111111111223334433 22 23345566666666666543
Q ss_pred CCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHC--
Q 005628 383 VPM------NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH-- 451 (687)
Q Consensus 383 i~p------d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-- 451 (687)
+.| -...|..+-+.|-.+|+++.|..+|+.-.+...+-- ..+|..--..=.++.+++.|+++.+.....
T Consensus 377 vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~ 456 (835)
T KOG2047|consen 377 VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT 456 (835)
T ss_pred cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence 111 124577777777788888888888887655432110 122332233333455666677766654321
Q ss_pred --------CCCC-------CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 452 --------GVYP-------EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 452 --------gv~p-------d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|-.| +...|...++.--..|-++....+++++.+.
T Consensus 457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1111 2334555555555667777777777777765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=85.94 E-value=11 Score=35.48 Aligned_cols=87 Identities=8% Similarity=-0.099 Sum_probs=37.3
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR 475 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~ 475 (687)
+...|++++|..+|+-.... .|....|--=+.+ +-..|++++|...|.....-.. -|...|-.+=.++.+.|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCHHH
Confidence 34445555555555444432 2333222222222 2223555555555554444332 233444444444455555555
Q ss_pred HHHHHHHHHhc
Q 005628 476 VYYLLHKLRTS 486 (687)
Q Consensus 476 A~~ll~~M~~~ 486 (687)
|.+-|+.-...
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=85.88 E-value=16 Score=43.96 Aligned_cols=131 Identities=9% Similarity=0.050 Sum_probs=81.8
Q ss_pred CCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHH---------------
Q 005628 348 SIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDM--------------- 409 (687)
Q Consensus 348 ~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l--------------- 409 (687)
.|+....-..||..|-..+++++|.++.++-.+. .|+. .-|..+ .+.+.++.++|..+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~v 102 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIV 102 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHH
Confidence 3444443344889998999999999998865543 2333 223333 44555555555444
Q ss_pred ---HHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 410 ---VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 410 ---~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|...+ -+...+-.|-.+|-+.|+.++|..+|+++.+.. .-|....|-+-..|+.. ++++|..++.+-...
T Consensus 103 e~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 103 EHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred HHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 11111111 122455666777778899999999999988876 44667777777777777 777777776655443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.78 E-value=22 Score=40.41 Aligned_cols=56 Identities=9% Similarity=0.119 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhh
Q 005628 192 FQLRVELDMCSKRGDVM--GAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~--~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~ 260 (687)
.-+++.=++|.|..+.. +-+.=+++|++.|-.|+.......+ +| .|.+.+|.++|.
T Consensus 599 L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~~-Ay------------~gKF~EAAklFk 656 (1081)
T KOG1538|consen 599 LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADVF-AY------------QGKFHEAAKLFK 656 (1081)
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHHH-Hh------------hhhHHHHHHHHH
Confidence 35566667777766543 4445567788889989887655443 33 366777777774
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=85.74 E-value=12 Score=41.17 Aligned_cols=64 Identities=14% Similarity=-0.035 Sum_probs=48.8
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
+...|++ +-..|.+.|++++|...|++-.+. .||. .+|..+-.+|.+.|+.++|++.+++..+.
T Consensus 74 ~a~a~~N-LG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVN-LGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3455666 777888888888888888886664 3553 45888888888888888888888887764
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=84.92 E-value=4.1 Score=31.88 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=10.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~ 414 (687)
|..+-..+...|++++|+..|++..
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai 30 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAI 30 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3333333444444444444444333
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=84.85 E-value=11 Score=41.32 Aligned_cols=66 Identities=17% Similarity=0.135 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
+.+...|+.+-.+|.+.|++++|+..|+.-.+. .|+.. +|..+-.+|...|+.++|.+.++...+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999986654 57754 5899999999999999999999998875
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=84.11 E-value=19 Score=37.47 Aligned_cols=120 Identities=13% Similarity=0.155 Sum_probs=74.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC--cchHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR--LRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~Pd--~~ty~~lI~ 430 (687)
.+..|...|++..|-+++.++ -..|-.. |++++|.+.|++-... | .+. ..++.-+..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~ 163 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAAD 163 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHH
Confidence 556666666666665555544 3455555 7888888888765432 3 111 245667778
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCC-----CCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 431 VFCNNGDVDKACSVEEHMLEHGVY-----PEEPE-LEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~gv~-----pd~~t-y~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.+.+.|++++|.++|++....-.. .+... |-..+-++...|+...|...|++......+...+
T Consensus 164 l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s 232 (282)
T PF14938_consen 164 LYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS 232 (282)
T ss_dssp HHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred HHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 899999999999999998765332 22322 2233335566799999999999998774343333
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=18 Score=33.98 Aligned_cols=89 Identities=9% Similarity=0.019 Sum_probs=71.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~-~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (687)
.-+...|++++|..+|+-+..-. |.. .-|-.|=-++-..|++++|++.+........ -|...|-.+=.++...|+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 45678999999999999998743 443 4455565566668999999999999887653 4677888888899999999
Q ss_pred HHHHHHHHHHHHC
Q 005628 439 DKACSVEEHMLEH 451 (687)
Q Consensus 439 ~~A~~l~~~M~~~ 451 (687)
+.|.+-|+..+..
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999976554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=83.33 E-value=2.8 Score=33.90 Aligned_cols=62 Identities=21% Similarity=0.234 Sum_probs=49.6
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCC-HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GV-YPE-EPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv-~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
.+|+.+-..|...|++++|...|++..+. |- .|+ ..+|+.|-..|...|++++|++++++-.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46888889999999999999999987654 21 133 5678888899999999999999998754
|
... |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=83.28 E-value=25 Score=41.59 Aligned_cols=115 Identities=18% Similarity=0.201 Sum_probs=89.9
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~--~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
...+++..|+....++.++. ||. .|..++.++ .+.|+.++|..+++.....+.. |..|-..+-..|-..|..++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence 46678899999998887753 442 355556654 4689999999999988766554 88999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
|..+|++... ..|+..-...+..+|.+.+.+.+-.+.=-+|
T Consensus 96 ~~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~L 136 (932)
T KOG2053|consen 96 AVHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQL 136 (932)
T ss_pred HHHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999875 4588888888999999988877544333333
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.48 E-value=11 Score=39.25 Aligned_cols=103 Identities=10% Similarity=0.041 Sum_probs=61.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 005628 382 EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL---GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 382 gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~---g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (687)
|......+...++..-....+++.+...+-.++.. -..|+...|. +.-+|-.-+.+++..+...=+.-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~--~irlllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHT--WIRLLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHH--HHHHHHccChHHHHHHHhCcchhccccchh
Confidence 44455555666666555566677777666665533 1334443332 222333445666666666666677777777
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+++.||+.+.+.+++.+|..+.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777766666554
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=69 Score=36.48 Aligned_cols=88 Identities=16% Similarity=0.130 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHH
Q 005628 369 QRGFEIYEKMCLD-EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEH 447 (687)
Q Consensus 369 ~~A~~lf~~M~~~-gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~ 447 (687)
..+.+...+.... ....+...|.++--.+...|++++|...+++....+ |+...|..+-..+...|+.++|.+.+++
T Consensus 401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444443332 233455778887666667899999999999988765 7888999999999999999999999988
Q ss_pred HHHCCCCCCHHHH
Q 005628 448 MLEHGVYPEEPEL 460 (687)
Q Consensus 448 M~~~gv~pd~~ty 460 (687)
... +.|...||
T Consensus 479 A~~--L~P~~pt~ 489 (517)
T PRK10153 479 AFN--LRPGENTL 489 (517)
T ss_pred HHh--cCCCCchH
Confidence 765 44555554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=82.09 E-value=45 Score=35.40 Aligned_cols=105 Identities=14% Similarity=0.210 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
.+.+..|.-+...|+...|.++.++. .+ ||..-|-.-|.+|+..+++++-.++... + -.++-|..++.+|
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence 45666677788899999888887654 44 8999999999999999999887765432 1 2348899999999
Q ss_pred HhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHcCHHHHHhh
Q 005628 468 VEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNSKEAARLG 511 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~~~~~~a~ 511 (687)
.+.|...+|..++.++.. -.-+.-|.+.+...+|.
T Consensus 248 ~~~~~~~eA~~yI~k~~~---------~~rv~~y~~~~~~~~A~ 282 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIPD---------EERVEMYLKCGDYKEAA 282 (319)
T ss_pred HHCCCHHHHHHHHHhCCh---------HHHHHHHHHCCCHHHHH
Confidence 999999999998877222 13355666666654444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=81.93 E-value=5.7 Score=31.42 Aligned_cols=54 Identities=17% Similarity=0.168 Sum_probs=26.3
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 396 MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|.+.+++++|.++++.+...+ +.+...|...=..+.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3445555555555555555441 11333344444445555555555555555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=81.57 E-value=59 Score=34.52 Aligned_cols=130 Identities=9% Similarity=-0.018 Sum_probs=93.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE-ASLTAVGRMAMSMG-DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~-~tyn~LI~~~~~~g-~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
+-..+...++.++|+.++++.... .|+- .+|+.--..+.+.| ++++++..++.+....- -+..+|+.---.+-+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHc
Confidence 445667778899999999998874 3433 34555545555666 67999999999887632 2334566444344455
Q ss_pred CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 436 GD--VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 436 g~--~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|+ .+++..+++.|.+..- -|...|+..--.+.+.|+++++++.++++.+. .+...
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~ 176 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNN 176 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCch
Confidence 65 3678888988887653 37788888888888899999999999999987 44444
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.64 E-value=27 Score=38.13 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhh
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREG-IKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFE 260 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G-i~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~ 260 (687)
+.|...|+.--|..-++.|..+|-+..+.| +.++++.|++.|.-+| .|+..-|..+|.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-----------~~d~~ta~~ife 456 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-----------TGDRATAYNIFE 456 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-----------cCCcchHHHHHH
Confidence 788888888888888999999999999888 5689999999998888 355556666663
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=80.59 E-value=7.2 Score=40.50 Aligned_cols=99 Identities=10% Similarity=-0.038 Sum_probs=69.6
Q ss_pred CccchhccccccccccccccCCChhhHHHHHHHHHhcC---CCCCccccchhhHhhccccccCCCcchhcccCCCCChhh
Q 005628 277 NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQD 353 (687)
Q Consensus 277 d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~t 353 (687)
.+++-..++.. -.+..+++++..++-.+...- ..|+...|
T Consensus 63 s~~~Vd~~V~v------~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~------------------------------- 105 (418)
T KOG4570|consen 63 SSLTVDRLVDV------ISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH------------------------------- 105 (418)
T ss_pred ceeehhhhhhc------cccccchhHHHHHHHHHhcCcchhhhccccHH-------------------------------
Confidence 44555666666 666778888887776665431 22222222
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
.+--++-.-+.++++.++..=...|+-||-+|++.||+.+.+.+++.+|..+.-.|...
T Consensus 106 ----~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 ----TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred ----HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 22334445577888888888888999999999999999999999999988887777654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 687 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 5e-83 | ||
| 4g23_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 3e-78 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
| >pdb|4G23|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 687 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-08 | |
| 3v32_B | 185 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 2e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 1e-08
Identities = 79/566 (13%), Positives = 159/566 (28%), Gaps = 175/566 (30%)
Query: 8 NTLQQQNQLFSLTLCKSSPPTLTVFNFQFLSRFLSSSPPKRTPLLVFKAHVRNTQAKLST 67
+ + +LF L K + + +F+ L+ Q + T
Sbjct: 59 DAVSGTLRLFWTLLSKQE---------EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109
Query: 68 TETEHETSTVTLRTRKGTASGASSLGTRDKRVDSAGEEKDGKRLTKDNNSRKNFAFLKSR 127
+ RD+ D + K N SR +LK R
Sbjct: 110 RMYIEQ---------------------RDRL------YNDNQVFAKYNVSRLQ-PYLKLR 141
Query: 128 EMSSGNSSLRSKDKKIGI-------KSSKTVNREVDNQKMEQRTNDSGQY--KVRGITDE 178
+ LR K + I K+ + +V Q D + +
Sbjct: 142 QALL---ELRP-AKNVLIDGVLGSGKTWVAL--DVCLSYKVQCKMDFKIFWLNL------ 189
Query: 179 KGSKKSKKDRSEQFQ---LRVELDMCSKRGDVMGAIRLYDKAQREGIK---LGQYHYNVL 232
+ S + E Q +++ + S R D I+L + + ++ + + N L
Sbjct: 190 -KNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247
Query: 233 LYL---CSSAAVGVVKPAKSGSGMRTLDTFEVS--TMNSTELGDSRDMDNNGQLDYGSSP 287
L L ++ + + F +S + +T R
Sbjct: 248 LVLLNVQNA---------------KAWNAFNLSCKILLTT-----RFKQV---------- 277
Query: 288 MIDKLESNSSYRF--DDLDSTFNEKENLGQFSNG-HMK---LNSQLLDGRSNL------E 335
D L + ++ D T E + L ++L + E
Sbjct: 278 -TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAE 335
Query: 336 RGPDDQSRKKDW--------------SIDNQDADEIRLSEDAKKYA----FQRGFEIYEK 377
D + +W S++ + E R K + F I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-----KMFDRLSVFPPSAHIPTI 390
Query: 378 -MCL---------DEVPMNE---ASLTAVGRMAMSMGDGDMAFDM-VKRMKSLGINPRL- 422
+ L V +N+ SL ++ + ++ VK ++ +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY----PEEPELEALLRVSVEAGKGDRVY- 477
Y + F ++ + ++++ H + E PE L R V+
Sbjct: 451 DHYNIPKT-FDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLFR---------MVFL 498
Query: 478 ---YLLHKLR--TSVRKVSPSTADVI 498
+L K+R ++ S S + +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTL 524
|
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A Length = 185 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 2e-05
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 608 VVDAANVGLY--SQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNRA 665
V+D +NV + ++ F + VN ++ + V R+ ++
Sbjct: 28 VIDGSNVAMSHGNKEVFSCRGILLAVNWFLERGH-TDITVFVPSWRKEQPRPDVPITDQH 86
Query: 666 LIEKWKNADALYATPTG--------SNDDW 687
++ + + L TP+ DD
Sbjct: 87 ILRELEKKKILVFTPSRRVGGKRVVCYDDR 116
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 687 | |||
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.89 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.87 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.84 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.82 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.54 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.5 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.45 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.38 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.3 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.25 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.24 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.23 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.22 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.22 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.21 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.21 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.15 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.14 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.13 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.13 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.11 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.1 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.09 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.99 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.96 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.96 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 98.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 98.87 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.82 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.73 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.72 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 98.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 98.7 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 98.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.69 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 98.66 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.64 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 98.54 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.53 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.53 | |
| 3v32_B | 185 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 98.52 | |
| 3v33_A | 223 | Ribonuclease ZC3H12A; rossmann-like sandwich fold, | 98.46 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.41 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.35 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.34 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 98.33 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.32 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.32 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 98.28 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.27 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 98.25 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 98.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 98.24 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 98.24 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.18 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.16 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.15 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.1 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 98.09 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.08 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 98.03 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.02 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.0 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.98 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.97 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 97.97 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.94 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 97.91 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 97.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.71 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.68 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.68 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 97.68 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 97.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.66 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.59 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 97.56 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.51 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 97.5 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 97.48 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 97.46 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 97.41 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 97.39 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 97.38 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 97.32 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 97.3 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.28 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 97.25 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 97.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 97.19 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 97.18 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 97.17 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 97.17 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 97.11 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 97.11 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 97.11 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 97.1 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 97.08 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 97.07 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.06 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 97.04 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.03 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.02 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 97.02 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 96.99 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 96.95 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 96.9 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 96.87 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 96.86 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 96.86 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.84 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 96.83 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.81 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 96.76 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 96.75 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 96.74 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.73 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 96.73 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.73 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 96.71 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 96.7 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.68 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 96.64 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 96.64 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.6 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 96.57 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.57 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.57 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 96.54 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 96.54 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.53 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 96.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.52 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 96.52 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.5 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.49 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 96.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 96.43 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 96.42 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 96.41 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 96.39 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 96.39 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 96.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 96.35 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 96.33 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 96.24 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 96.2 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 96.16 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 96.09 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 96.0 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.99 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.96 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 95.95 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 95.8 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 95.73 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 95.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 95.56 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 95.47 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 95.44 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 95.32 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 95.24 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 95.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 95.22 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 95.22 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 95.21 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 95.14 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 94.85 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 94.77 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 94.74 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 94.64 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 94.43 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 94.4 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 94.16 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 94.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 93.89 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 93.84 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 93.7 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 93.56 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 93.46 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 93.22 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 92.98 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 92.76 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 92.43 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 92.23 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 92.09 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 91.97 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 91.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 91.55 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 91.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 90.72 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 90.58 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 90.27 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 90.24 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 90.06 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 89.95 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 89.57 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 89.2 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 88.85 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 88.55 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 88.2 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 86.96 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 85.59 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 83.97 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 83.47 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 81.87 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 81.62 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 81.05 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 80.84 |
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-68 Score=596.37 Aligned_cols=390 Identities=45% Similarity=0.773 Sum_probs=356.8
Q ss_pred ccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcc
Q 005628 267 TELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 267 ~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
+++.++ ++. |...++.+|++ ||+.|++++|.++|++|.+.|+.||.+||| .||.+|+.....
T Consensus 14 ~~~~~k-~~~~spe~~l~~~id~------c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn--~Li~~c~~~~~~------- 77 (501)
T 4g26_A 14 RKAKKK-AIQQSPEALLKQKLDM------CSKKGDVLEALRLYDEARRNGVQLSQYHYN--VLLYVCSLAEAA------- 77 (501)
T ss_dssp -----------CHHHHHHHHHHH------TTTSCCHHHHHHHHHHHHHHTCCCCHHHHH--HHHHHHTTCCCC-------
T ss_pred HHHHHh-cccCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHhCCch-------
Confidence 455554 555 66779999999 999999999999999999999999999998 555555421110
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
...++.+.+++|.++|++|...|+.||.+|||+||++||+.|++++|+++|++|.+.|+.||.+|
T Consensus 78 ---------------~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 142 (501)
T 4g26_A 78 ---------------TESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRS 142 (501)
T ss_dssp ---------------SSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred ---------------hhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccce
Confidence 01123456899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHHHHcC
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAKWFNS 504 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~~~~~ 504 (687)
||+||.+||+.|++++|.++|++|.+.|+.||..||++||++|++.|++++|.++|++|++.+..|++.||++|..||.+
T Consensus 143 yn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 143 YGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred ehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999555555699999999999
Q ss_pred HHHHHhhcccchhhHHHHHhhhcCCcccccccCCCCccEEEeeeecCCCcccccccccccccCCHHHHHHHHHHHHHHHH
Q 005628 505 KEAARLGKKKWNESLIKDTMENKGGGWHGLGWLGKGKWIVSHTTVGGDALCKCCGEKLAIIDLDPIETEKFAESVASIAI 584 (687)
Q Consensus 505 ~~~~~a~~~~~~~~~v~ea~~~~g~~~~~M~~~g~~p~~vt~t~vl~~g~C~~~~~~L~~~~l~~~e~~~l~~~i~~~~~ 584 (687)
......++..|+...+.+++...|+.|+...+.|...|.+..+.+...|.|.+|+..|.+++++++|++.|.+.|.+.++
T Consensus 223 ~~a~~~g~~~~d~~~~~~~~~~~g~~~~~~~~~~~~~w~v~~t~v~~~G~C~~c~~~L~~i~l~~~e~~~l~~~i~~~~~ 302 (501)
T 4g26_A 223 EVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLAC 302 (501)
T ss_dssp HHHHTCCBSCCCHHHHHHHHHHHTSSCCCSCCCBCSCEEEEEECBCTTSBBTTTCCBCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhhhhHhccCcccccccccccCceeEEeeecccCCCccchhhhhccccCCHHHHHHHHHHHHHHHH
Confidence 98888999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred hhhcchhHHHHHHHHhhcCCccEEEeccchhcccCCCCChhHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCChHHH
Q 005628 585 KRERNSSFQKFQKWLDYYGPFEAVVDAANVGLYSQRNFKPARVNAVVNGIRQKFPSKKWPLIVLHNRRITGHKMDQPVNR 664 (687)
Q Consensus 585 ~~~~~~~~~~F~~~l~~~~~yd~vIDGanvg~~~~~~~~~~~l~~vv~~l~~~~~~~~~~lvvL~~~~~~~~~~~~~~~~ 664 (687)
.++++++|+.|++|+++++|||+||||+|||||+|++|++.|++.|+..+.+..+++++||||||++|+.+..+..|+++
T Consensus 303 ~~~~~~~~~~F~~~l~~~~p~d~vIDG~NV~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~lv~l~~~~~~~~~~~~~~~~ 382 (501)
T 4g26_A 303 EREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQRSFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNR 382 (501)
T ss_dssp HHSCHHHHHHHHHHHHTSCCCSEEEEHHHHHHTTCSSCCHHHHHHHHHHHHHHSTTCCCCEEEEEHHHHTSGGGSSHHHH
T ss_pred ccchHHHHHHHHHHHHhcCCchhhhccchhhccccccccHHHHHHHHHHHHHHhhccCCcEEEeehhhhcccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889899999
Q ss_pred HHHHHHHhCCceeeCCCCCCCCC
Q 005628 665 ALIEKWKNADALYATPTGSNDDW 687 (687)
Q Consensus 665 ~l~~~w~~~~~ly~tp~~~nDDw 687 (687)
+++++|++++.||+||++|||||
T Consensus 383 ~~~~~~~~~~~~~~t~~~s~DD~ 405 (501)
T 4g26_A 383 ALLEKWKNAGALYATPPGSNDDW 405 (501)
T ss_dssp HHHHHHHHTTCEEEECTTCCHHH
T ss_pred HHHHHHHhcCeEEeCCCCCCchH
Confidence 99999999999999999999998
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=320.07 Aligned_cols=217 Identities=24% Similarity=0.281 Sum_probs=185.5
Q ss_pred CchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCccc
Q 005628 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKP 246 (687)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~ 246 (687)
..+..+...+.+++ ....|+ ..++.+|++|||.|++++|+++|++|++.|++||.+|||+||++|++.
T Consensus 7 s~~e~L~~~~~~k~----~~~spe-~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~------- 74 (501)
T 4g26_A 7 SPSENLSRKAKKKA----IQQSPE-ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA------- 74 (501)
T ss_dssp ---------------------CHH-HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTC-------
T ss_pred chHHHHHHHHHHhc----ccCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhC-------
Confidence 34556666664332 223455 678999999999999999999999999999999999999999999932
Q ss_pred CCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhh
Q 005628 247 AKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQ 326 (687)
Q Consensus 247 ~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~ 326 (687)
+... . .++.+.+++|.++|++|...|+.||.+||+
T Consensus 75 ---~~~~---------------------------------~------~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn--- 109 (501)
T 4g26_A 75 ---EAAT---------------------------------E------SSPNPGLSRGFDIFKQMIVDKVVPNEATFT--- 109 (501)
T ss_dssp ---CCCS---------------------------------S------SSCCHHHHHHHHHHHHHHHTTCCCCHHHHH---
T ss_pred ---Cchh---------------------------------h------hhhcchHHHHHHHHHHHHHhCCCCCHHHHH---
Confidence 2211 0 556778899999999999999888888885
Q ss_pred HhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHH
Q 005628 327 LLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMA 406 (687)
Q Consensus 327 li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A 406 (687)
+ ||++|++.|++++|.++|++|.+.|+.||..|||+||.+||+.|++++|
T Consensus 110 -----------------------------~-lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A 159 (501)
T 4g26_A 110 -----------------------------N-GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKA 159 (501)
T ss_dssp -----------------------------H-HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred -----------------------------H-HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHH
Confidence 5 9999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 407 FDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 407 ~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
.++|++|.+.|+.||..||++||.+||+.|++++|.++|++|.+.|+.|+..||++|+..|+..
T Consensus 160 ~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 160 YEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999864
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-22 Score=231.11 Aligned_cols=297 Identities=8% Similarity=-0.086 Sum_probs=219.6
Q ss_pred chHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 005628 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ 226 (687)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~ 226 (687)
....++..+. ...+.++.++|.++|+.|.. ..|+..+|+.++.+|.+.|++++|+.+|+.+.. ..+|.
T Consensus 83 ~~~~~~~~~~--~~~~~g~~~~A~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 150 (597)
T 2xpi_A 83 REDYLRLWRH--DALMQQQYKCAAFVGEKVLD--------ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSS 150 (597)
T ss_dssp HHHHHHHHHH--HHHHTTCHHHHHHHHHHHHH--------HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCH
T ss_pred HHHHHHHHHH--HHHHccCchHHHHHHHHHHh--------hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccch
Confidence 4455666666 67788999999999999953 345668999999999999999999999998864 37899
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccC--------------CCC-Cccchhccccccccc
Q 005628 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR--------------DMD-NNGQLDYGSSPMIDK 291 (687)
Q Consensus 227 ~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~--------------g~~-d~~tyn~Li~~~~~~ 291 (687)
.+++.++.+|+ +.|++++|..+|+ ++.... +.+ +..+|+.++.+
T Consensus 151 ~~~~~l~~~~~----------~~g~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---- 209 (597)
T 2xpi_A 151 ACRYLAAFCLV----------KLYDWQGALNLLG-------ETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQV---- 209 (597)
T ss_dssp HHHHHHHHHHH----------HTTCHHHHHHHHC-------SSCTTC----------CCCSSCCHHHHHHHHHHHH----
T ss_pred hHHHHHHHHHH----------HHhhHHHHHHHHh-------ccCCccccccccccccccccccchhHHHHHHHHHH----
Confidence 99999999999 8999999999995 333221 233 57789999999
Q ss_pred cccccCCChhhHHHHHHHHHhcCCCCCcccc-c-h-----------------------------------hhHhhccc--
Q 005628 292 LESNSSYRFDDLDSTFNEKENLGQFSNGHMK-L-N-----------------------------------SQLLDGRS-- 332 (687)
Q Consensus 292 ~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty-~-~-----------------------------------~~li~g~~-- 332 (687)
|.+.|++++|..+|++|.+.+ |+..+. . . ..++.+|+
T Consensus 210 --~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (597)
T 2xpi_A 210 --YTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE 285 (597)
T ss_dssp --HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTH
T ss_pred --HHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCc
Confidence 999999999999999999865 443221 1 0 01233333
Q ss_pred ---cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005628 333 ---NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (687)
Q Consensus 333 ---~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l 409 (687)
..|..+|..+... .+|..+|+. ++..|.+.|++++|.++|++|.+.+. .+..+|+.++.+|++.|++++|.++
T Consensus 286 g~~~~A~~~~~~~~~~--~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (597)
T 2xpi_A 286 DELRRAEDYLSSINGL--EKSSDLLLC-KADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLI 361 (597)
T ss_dssp HHHHHHHHHHHTSTTG--GGCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHhhcC--CchHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455677777655 578899998 99999999999999999999987552 3556677777777777777777777
Q ss_pred HHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 410 VKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 410 ~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|++|... ...+..+|+.++..|++.|++++|.++|+++.+.. ..+..+|+.++.+|++.|++++|.++|++|...
T Consensus 362 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 436 (597)
T 2xpi_A 362 SNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436 (597)
T ss_dssp HHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred HHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7776643 23455666777777777777777777777666532 224566777777777777777777777776655
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-20 Score=214.61 Aligned_cols=314 Identities=11% Similarity=-0.068 Sum_probs=192.6
Q ss_pred chHhHhHHhhhHHHhhhcCCCchhhhHHHhhhcC---------CCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 005628 147 SSKTVNREVDNQKMEQRTNDSGQYKVRGITDEKG---------SKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKA 217 (687)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~A~~v~~~M~~~g---------~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M 217 (687)
....++.... ...+.++.++|.++|+++.... ...+.+..++..+|+.++.+|.+.|++++|+++|++|
T Consensus 149 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 226 (597)
T 2xpi_A 149 SSACRYLAAF--CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEA 226 (597)
T ss_dssp CHHHHHHHHH--HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhHHHHHHH--HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555544 6778899999999999642111 0011244567899999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcc----------------------------cCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 218 QREGIKLGQYHYNVLLYLCSSAA----------------------------VGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 218 ~~~Gi~pd~~tyn~Ll~~~~~~~----------------------------~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
.+.+.. +...+..+...+...+ .....+.+.|++++|..+|. ++
T Consensus 227 ~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~-------~~ 298 (597)
T 2xpi_A 227 LMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS-------SI 298 (597)
T ss_dssp HHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH-------TS
T ss_pred HHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH-------Hh
Confidence 976421 2333333322110000 00112447788888888884 44
Q ss_pred cccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccc-----cccCCCcchhcc
Q 005628 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRS-----NLERGPDDQSRK 344 (687)
Q Consensus 270 ~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~-----~~a~~~~~~m~~ 344 (687)
... -.+..+|+.++.+ +.+.|++++|..+|++|.+.+. .+..+|. .++.++. ..|..++..+..
T Consensus 299 ~~~--~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~ 367 (597)
T 2xpi_A 299 NGL--EKSSDLLLCKADT------LFVRSRFIDVLAITTKILEIDP-YNLDVYP--LHLASLHESGEKNKLYLISNDLVD 367 (597)
T ss_dssp TTG--GGCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHCT-TCCTTHH--HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcC--CchHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHcCc-ccHHHHH--HHHHHHHHhCCHHHHHHHHHHHHh
Confidence 432 1267778888888 8888888888888888887652 2455555 4554444 334445555542
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
. .+.+..+|+. +...|++.|++++|.++|++|.+.. +.+..+|+.++.+|++.|++++|.++|++|.+.+ ..+..+
T Consensus 368 ~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 443 (597)
T 2xpi_A 368 R-HPEKAVTWLA-VGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLP 443 (597)
T ss_dssp H-CTTSHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHH
T ss_pred h-CcccHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence 2 2334555555 6666666666666666666665532 2245566666666666666666666666665542 235566
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|+.++.+|++.|++++|.++|++|.+.. ..+..+|+.+...|.+.|++++|.++|++|.+.
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 6666666666666666666666665542 224566666666666666666666666666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.4e-21 Score=223.59 Aligned_cols=124 Identities=15% Similarity=-0.001 Sum_probs=115.0
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCL---DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
-.+|||+ ||++||+.|++++|.++|++|.+ .|+.||++|||+||+|||+.|++++|.++|++|++.|+.||++|||
T Consensus 126 ~~~Tyna-LIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 126 QQQRLLA-FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3568999 99999999999999999988864 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 427 PALSVFCNNGDV-DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 427 ~lI~~~~~~g~~-~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
+||++||+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+-++
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~ 253 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHH
Confidence 999999999985 789999999999999999999999998877765333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-21 Score=224.47 Aligned_cols=153 Identities=10% Similarity=-0.086 Sum_probs=127.4
Q ss_pred ccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHH
Q 005628 278 NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (687)
Q Consensus 278 ~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (687)
.+|||+||+| ||+.|++++|.++|++|.+. ..+|+.||++|||+
T Consensus 127 ~~TynaLIdg------lcK~G~leeA~~Lf~eM~~m-----------------------------~~kG~~PdvvTYNt- 170 (1134)
T 3spa_A 127 QQRLLAFFKC------CLLTDQLPLAHHLLVVHHGQ-----------------------------RQKRKLLTLDMYNA- 170 (1134)
T ss_dssp HHHHHHHHHH------HHHHTCHHHHHHHHHHHHHS-----------------------------HHHHTTCCHHHHHH-
T ss_pred HHHHHHHHHH------HHhCCCHHHHHHHHHHHHHH-----------------------------hhcCCCCCHhHHHH-
Confidence 4689999999 99999999999999998752 22344555555567
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG-DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~-~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
||++||+.|++++|.++|++|++.|+.||++|||+||+++|+.|+. ++|.++|++|.+.|+.||.+||+++|.++.+.+
T Consensus 171 LI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~ 250 (1134)
T 3spa_A 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250 (1134)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH
Confidence 9999999999999999999999999999999999999999999985 789999999999999999999999998887765
Q ss_pred ChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcC
Q 005628 437 DVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAG 471 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd------~~ty~~Li~~~~~~g 471 (687)
-++...++ ..++.|+ +.|...|.+.|.+.+
T Consensus 251 vL~~Vrkv-----~P~f~p~~~~~~~~~t~~LL~dl~s~d~ 286 (1134)
T 3spa_A 251 VLKAVHKV-----KPTFSLPPQLPPPVNTSKLLRDVYAKDG 286 (1134)
T ss_dssp HHHHHGGG-----CCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred HHHHHHHh-----CcccCCCCCCcccccchHHHHHHHccCC
Confidence 44443333 3355554 666677778887766
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=9.9e-13 Score=141.02 Aligned_cols=285 Identities=11% Similarity=-0.038 Sum_probs=198.9
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~ 237 (687)
...+.++.++|.+.|+.+.... | .+..+|..+..++.+.|++++|++.|+++... .|+.. .+..+-..|.
T Consensus 76 ~~~~~g~~~~A~~~~~~al~~~--p-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 146 (388)
T 1w3b_A 76 VYKERGQLQEAIEHYRHALRLK--P-----DFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcC--c-----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH
Confidence 4446677777777777775421 1 12346777777777788888888887777754 34443 3444444444
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..|+.++|...|. ++... .-.+..+|+.+... +.+.|++++|...|+++.+.. |
T Consensus 147 ----------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p 200 (388)
T 1w3b_A 147 ----------ALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNAQGEIWLAIHHFEKAVTLD--P 200 (388)
T ss_dssp ----------TTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--C
Confidence 6788888888884 44332 22255668888777 888888888888888887753 4
Q ss_pred Ccc-ccchhhHhhccc-----cccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH
Q 005628 318 NGH-MKLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 318 d~~-ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (687)
+.. .|. .+-..+. +.|...+.... .+.|+ ..+|+. +...|.+.|++++|.+.|+++.+.. +.+..+|
T Consensus 201 ~~~~~~~--~lg~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 274 (388)
T 1w3b_A 201 NFLDAYI--NLGNVLKEARIFDRAVAAYLRAL--SLSPNHAVVHGN-LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAY 274 (388)
T ss_dssp TCHHHHH--HHHHHHHTTTCTTHHHHHHHHHH--HHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHH
T ss_pred CcHHHHH--HHHHHHHHcCCHHHHHHHHHHHH--hhCcCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHH
Confidence 432 222 1111111 22222222222 23454 456666 8888899999999999999988754 2356788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA 470 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~ 470 (687)
..+...+.+.|++++|.+.|+++.+. .+.+..+|+.+...+.+.|++++|.+.|+++.+.. +.+..+|..+...|.+.
T Consensus 275 ~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 352 (388)
T 1w3b_A 275 CNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQ 352 (388)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 89999999999999999999988876 34567888889999999999999999999887642 34577888899999999
Q ss_pred CChHHHHHHHHHHHhc
Q 005628 471 GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 471 g~~~~A~~ll~~M~~~ 486 (687)
|++++|...|+++...
T Consensus 353 g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 353 GKLQEALMHYKEAIRI 368 (388)
T ss_dssp TCCHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999988875
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.4e-12 Score=139.77 Aligned_cols=308 Identities=12% Similarity=-0.025 Sum_probs=224.5
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
....++.++|...++..... .+.+..+|..+...|.+.|++++|++.|+++.... +.+..+|..+..++.
T Consensus 43 ~~~~~~~~~a~~~~~~a~~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~-- 112 (388)
T 1w3b_A 43 HFQCRRLDRSAHFSTLAIKQ-------NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALV-- 112 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHhc-------CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHH--
Confidence 34667888888888877542 23355789999999999999999999999998642 234567888988888
Q ss_pred ccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc
Q 005628 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG 319 (687)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~ 319 (687)
+.|++++|...|. ++... .-.+...+..+-.. +...|++++|..+|+++.+. .|+.
T Consensus 113 --------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~--~p~~ 168 (388)
T 1w3b_A 113 --------AAGDMEGAVQAYV-------SALQY-NPDLYCVRSDLGNL------LKALGRLEEAKACYLKAIET--QPNF 168 (388)
T ss_dssp --------HHSCSSHHHHHHH-------HHHHH-CTTCTHHHHHHHHH------HHTTSCHHHHHHHHHHHHHH--CTTC
T ss_pred --------HcCCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHccCHHHHHHHHHHHHHh--CCCC
Confidence 7888999999984 33332 11133346666666 77889999999999998876 3543
Q ss_pred -cccchhhHhhccc-----cccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005628 320 -HMKLNSQLLDGRS-----NLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (687)
Q Consensus 320 -~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~ 392 (687)
.+|. .+...+. ..|...+..+... .|+ ...|.. +-..+...|++++|...|++..... +-+..+|..
T Consensus 169 ~~~~~--~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 242 (388)
T 1w3b_A 169 AVAWS--NLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYIN-LGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN 242 (388)
T ss_dssp HHHHH--HHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHH-HHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHH--HHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHH
Confidence 3444 3333333 3444455555543 344 334555 7788888899999999998887643 235788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (687)
+...|.+.|++++|.+.|+++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+. .+.+..+|+.+...+.+.|+
T Consensus 243 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~ 320 (388)
T 1w3b_A 243 LACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN 320 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999988753 124568899999999999999999999999876 35578899999999999999
Q ss_pred hHHHHHHHHHHHhccCCCC-hhHHHH-HHHHHcCHHHHHhh
Q 005628 473 GDRVYYLLHKLRTSVRKVS-PSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 473 ~~~A~~ll~~M~~~~~g~~-p~t~~~-I~~~~~~~~~~~a~ 511 (687)
+++|..+++++... .+. +.++.. ...++..+...+|.
T Consensus 321 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 321 IEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999998876 322 224433 55566665544433
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-11 Score=135.41 Aligned_cols=292 Identities=9% Similarity=-0.074 Sum_probs=200.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.++|+.+... .+.+...|..+..++.+.|++++|+..|+++.+.+ +.+...|..+...|.
T Consensus 35 ~~~~~g~~~~A~~~~~~~l~~-------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 105 (450)
T 2y4t_A 35 KLLAAGQLADALSQFHAAVDG-------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLL- 105 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHH-
Confidence 566789999999999999653 12346899999999999999999999999999864 345788999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCc---cchhccccc------cccccccccCCChhhHHHHHHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN---GQLDYGSSP------MIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~---~tyn~Li~~------~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+.|++++|...|. ++... .-.+. ..|..++.. ......+.+.|++++|..+|++
T Consensus 106 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 106 ---------KQGKLDEAEDDFK-------KVLKS-NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHhc-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8999999999995 44432 22233 445444221 0011227789999999999999
Q ss_pred HHhcCCCCC-ccccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 310 KENLGQFSN-GHMKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 310 M~~~g~~Pd-~~ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
+.+.. |+ ...+. .+...+. ..|...+..+... .+.+..+|+. +...|.+.|++++|.+.|+++....
T Consensus 169 ~~~~~--~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~- 241 (450)
T 2y4t_A 169 ILEVC--VWDAELRE--LRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD- 241 (450)
T ss_dssp HHHHC--TTCHHHHH--HHHHHHHHTTCGGGGHHHHHHHHHH-HCSCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHhC--CCChHHHH--HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 98753 33 33333 3333332 3444455555432 1224455666 7777777788888888887776532
Q ss_pred CCCHHHHHHH------------HHHHHHcCChHHHHHHHHHHHHcCCCCC-----cchHHHHHHHHHhCCChHHHHHHHH
Q 005628 384 PMNEASLTAV------------GRMAMSMGDGDMAFDMVKRMKSLGINPR-----LRSYGPALSVFCNNGDVDKACSVEE 446 (687)
Q Consensus 384 ~pd~~tyn~L------------I~~~~~~g~~~~A~~l~~~M~~~g~~Pd-----~~ty~~lI~~~~~~g~~~~A~~l~~ 446 (687)
+.+...+..+ ...|.+.|++++|..+|+.+... .|+ ...|..+...+.+.|++++|.+.++
T Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 319 (450)
T 2y4t_A 242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCS 319 (450)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1233444444 66777778888888887777664 344 3467777777777788888887777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 447 HMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 447 ~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.+.. +.+...|..+..+|...|++++|...|++..+.
T Consensus 320 ~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 320 EVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 776542 235677777777777788888888877777765
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-11 Score=130.36 Aligned_cols=211 Identities=11% Similarity=0.040 Sum_probs=130.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccc
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~e 268 (687)
.+...|..+...+.+.|++++|+.+|+++... .+.+..+|..+..+|. ..|+.++|...|. +
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~ 85 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG-DPDNYIAYYRRATVFL----------AMGKSKAALPDLT-------K 85 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHH----------HCCCHHHHHHHHH-------H
Confidence 34578999999999999999999999999875 3457889999999999 8899999999995 4
Q ss_pred ccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCc----cccchhhHhhccccccCCCcchhcc
Q 005628 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNG----HMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 269 m~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~----~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
+... +-.+...|..+... +.+.|++++|...|+++.+.. |+. ..+. .+...+.
T Consensus 86 al~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~--~l~~~~~------------ 142 (450)
T 2y4t_A 86 VIQL-KMDFTAARLQRGHL------LLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQS--QLIKSDE------------ 142 (450)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHH--HHHHHHH------------
T ss_pred HHhc-CCCcHHHHHHHHHH------HHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHH--HHHHHHH------------
Confidence 4443 22256668888888 999999999999999998753 443 2222 2211100
Q ss_pred cCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS 424 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t 424 (687)
...+.. +-..|.+.|++++|.++|+++.... +.+..++..+...|.+.|++++|..+|+++.... ..+..+
T Consensus 143 ------~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~ 213 (450)
T 2y4t_A 143 ------MQRLRS-QALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEA 213 (450)
T ss_dssp ------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHH
T ss_pred ------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 000001 1223444455555555555544321 1234445555555555555555555555444331 123344
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 425 YGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 425 y~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
|..+...|...|+.++|.+.|+.+.
T Consensus 214 ~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 214 FYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.9e-12 Score=139.65 Aligned_cols=222 Identities=13% Similarity=0.095 Sum_probs=93.1
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~ 241 (687)
+.++.++|.+.++.+. . | .+|..|..++.+.|++++|++.|.+. +|..+|..++.+|.
T Consensus 15 ~~~~ld~A~~fae~~~------~----~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae---- 72 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------E----P--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN---- 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------C----h--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHH----
Confidence 6778999999999982 2 2 59999999999999999999999753 68889999999998
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
..|++++|...+ +|..+ ..++..+.+.|+.+ |.+.|+++++.++++ .|+..+
T Consensus 73 ------~~g~~EeAi~yl--------~~ark-~~~~~~i~~~Li~~------Y~Klg~l~e~e~f~~-------~pn~~a 124 (449)
T 1b89_A 73 ------TSGNWEELVKYL--------QMARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNNAH 124 (449)
T ss_dssp ---------------------------------------------------------CHHHHTTTTT-------CC----
T ss_pred ------hCCCHHHHHHHH--------HHHHH-hCccchhHHHHHHH------HHHhCCHHHHHHHHc-------CCcHHH
Confidence 889999999977 34443 34467789999999 999999999987774 244444
Q ss_pred cchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005628 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (687)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g 401 (687)
| +. +-+.|...|.+++|..+|..+ ..|..|+.++++.|
T Consensus 125 ~--------------------------------~~-IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg 162 (449)
T 1b89_A 125 I--------------------------------QQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLG 162 (449)
T ss_dssp ---------------------------------------------CTTTHHHHHHHT---------TCHHHHHHHHHTTT
T ss_pred H--------------------------------HH-HHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhc
Confidence 4 45 778899999999999999987 36999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
++++|.+.+..+ -+..+|..++.+|+..|+++.|...... +..+..-...++..|.+.|++++|..+|+
T Consensus 163 ~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEai~lLe 231 (449)
T 1b89_A 163 EYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLE 231 (449)
T ss_dssp CHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999987 2789999999999999999999655544 33344446679999999999999999998
Q ss_pred HHHhc
Q 005628 482 KLRTS 486 (687)
Q Consensus 482 ~M~~~ 486 (687)
.-...
T Consensus 232 ~aL~l 236 (449)
T 1b89_A 232 AALGL 236 (449)
T ss_dssp HHTTS
T ss_pred HHhCC
Confidence 76654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=7.9e-10 Score=114.18 Aligned_cols=257 Identities=9% Similarity=-0.064 Sum_probs=195.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.++|+.+.... +.+...|..+...+.+.|++++|+..|+++.... +.+..++..+...|.
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~- 100 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAA-------PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT- 100 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH-
Confidence 3457789999999999986542 1245788899999999999999999999998763 346788888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhcc--------------cc-ccccccccccCCChhhH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG--------------SS-PMIDKLESNSSYRFDDL 303 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~L--------------i~-~~~~~~~~~~~g~~~~A 303 (687)
..|+.++|...+. +.... .-.+...+..+ -. . +...|++++|
T Consensus 101 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 157 (327)
T 3cv0_A 101 ---------NEHNANAALASLR-------AWLLS-QPQYEQLGSVNLQADVDIDDLNVQSEDFF------FAAPNEYREC 157 (327)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTTTC--------------------CC------TTSHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CCccHHHHHHHhHHHHHHHHHHHHHHhHH------HHHcccHHHH
Confidence 7899999999995 33322 11122223333 11 2 6678889999
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
...++++.+.. |+ +...+.. +...|.+.|++++|.+.|+++....
T Consensus 158 ~~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~- 202 (327)
T 3cv0_A 158 RTLLHAALEMN--PN-------------------------------DAQLHAS-LGVLYNLSNNYDSAAANLRRAVELR- 202 (327)
T ss_dssp HHHHHHHHHHS--TT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhC--CC-------------------------------CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-
Confidence 99998887653 22 2223344 7788889999999999999988753
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--------
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-------- 455 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-------- 455 (687)
+.+..+|..+...+...|++++|...|++..+.. +.+..+|..+...|.+.|+.++|.+.|+...+..-..
T Consensus 203 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 281 (327)
T 3cv0_A 203 PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----C
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccch
Confidence 3467889999999999999999999999987753 2356788889999999999999999999887653221
Q ss_pred ---CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 456 ---EEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 456 ---d~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
+...|..+..+|.+.|+.++|..++++.
T Consensus 282 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 282 REATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp CTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred hhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4778899999999999999999887643
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.6e-10 Score=122.71 Aligned_cols=294 Identities=11% Similarity=-0.039 Sum_probs=206.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.+.|+.+.... |+...|..+..+|.+.|++++|+..|+++.+.. +-+...|..+..+|.
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 84 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE- 84 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH-
Confidence 4457789999999999997642 566899999999999999999999999999764 345678999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhcccc--------------------------------
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSS-------------------------------- 286 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~-------------------------------- 286 (687)
+.|+.++|...|. ++..... .+......++.
T Consensus 85 ---------~~g~~~~A~~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 147 (514)
T 2gw1_A 85 ---------GLGKFADAMFDLS-------VLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP 147 (514)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------
T ss_pred ---------HHhhHHHHHHHHH-------HHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh
Confidence 8899999999985 3322101 00000000000
Q ss_pred ---------------------------------------------ccccccccccCCChhhHHHHHHHHHh-----cCCC
Q 005628 287 ---------------------------------------------PMIDKLESNSSYRFDDLDSTFNEKEN-----LGQF 316 (687)
Q Consensus 287 ---------------------------------------------~~~~~~~~~~~g~~~~A~~lf~eM~~-----~g~~ 316 (687)
+ .....+.+.|++++|..+|+++.+ ..-.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 148 AKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNG-LSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ---------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHH-HHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHH-HHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 0 000002246778888888887776 3223
Q ss_pred CCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005628 317 SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (687)
Q Consensus 317 Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~ 396 (687)
|+..... +.+...|.. +...|...|++++|.++|+++.... |+..+|..+...
T Consensus 227 ~~~~~~~------------------------~~~~~~~~~-~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~ 279 (514)
T 2gw1_A 227 NEDEKLK------------------------EKLAISLEH-TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALI 279 (514)
T ss_dssp TTCHHHH------------------------HHHHHHHHH-HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred ccccccC------------------------hHHHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHH
Confidence 3332110 012233444 6778888899999999999888764 337888888899
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
|...|++++|...++.+.... ..+...|..+...|...|++++|...|+...+..- .+...|..+...|...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999887652 34567888888899999999999999998887542 2567888888888999999999
Q ss_pred HHHHHHHHhccCCC-ChhHHHH-HHHHHcCHHHHHhh
Q 005628 477 YYLLHKLRTSVRKV-SPSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 477 ~~ll~~M~~~~~g~-~p~t~~~-I~~~~~~~~~~~a~ 511 (687)
..+|+++... .+ .+..+.. ...+...+...+|.
T Consensus 358 ~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 358 ETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999988876 32 2334333 44455555444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-09 Score=111.96 Aligned_cols=260 Identities=9% Similarity=-0.070 Sum_probs=206.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.++|+.+..... .+...+..++..+.+.|++++|+.+|+++.... +-+...|..+-..+.
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~~p-------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 101 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEKDP-------FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL- 101 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-------TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHHcCC-------CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH-
Confidence 34466999999999999865421 122466677788899999999999999998753 235667777777777
Q ss_pred cccCCcccCCCC-chhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 239 ~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..| +.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+.. |
T Consensus 102 ---------~~~~~~~~A~~~~~-------~a~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~ 156 (330)
T 3hym_B 102 ---------MVGHKNEHARRYLS-------KATTL-EKTYGPAWIAYGHS------FAVESEHDQAMAAYFTAAQLM--K 156 (330)
T ss_dssp ---------HSCSCHHHHHHHHH-------HHHTT-CTTCTHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHT--T
T ss_pred ---------HhhhhHHHHHHHHH-------HHHHh-CCccHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhc--c
Confidence 677 8999999995 33332 22255568888888 999999999999999887753 2
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~ 397 (687)
+. ...+.. +...|...|++++|.+.|++..+.. +.+..+|..+...+
T Consensus 157 ~~-------------------------------~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 157 GC-------------------------------HLPMLY-IGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp TC-------------------------------SHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred cc-------------------------------HHHHHH-HHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 21 112233 6678889999999999999998764 34678999999999
Q ss_pred HHcCChHHHHHHHHHHHHcC--------CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005628 398 MSMGDGDMAFDMVKRMKSLG--------INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (687)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g--------~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (687)
...|++++|...+++..... ...+..+|..+...|.+.|+.++|.+.|+...+.. ..+...|..+-..|.+
T Consensus 204 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 282 (330)
T 3hym_B 204 FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSL 282 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHH
Confidence 99999999999999987641 13446789999999999999999999999998764 3367889999999999
Q ss_pred cCChHHHHHHHHHHHhc
Q 005628 470 AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (687)
.|++++|...|++....
T Consensus 283 ~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 283 MGNFENAVDYFHTALGL 299 (330)
T ss_dssp HTCHHHHHHHHHTTTTT
T ss_pred hccHHHHHHHHHHHHcc
Confidence 99999999999988766
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.22 E-value=9e-10 Score=116.27 Aligned_cols=257 Identities=10% Similarity=-0.077 Sum_probs=179.8
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.+.|+.+.+.. +.+...|..+...+.+.|++++|+..|+++.... +.+..++..+...|.
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~- 143 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT- 143 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4457889999999999996542 2245789999999999999999999999998764 447888999999998
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhc---------------cccccccccccccCCChhhH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDY---------------GSSPMIDKLESNSSYRFDDL 303 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~---------------Li~~~~~~~~~~~~g~~~~A 303 (687)
..|+.++|...|. ++... .-.+...+.. .+.. +...|++++|
T Consensus 144 ---------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~A 200 (368)
T 1fch_A 144 ---------NESLQRQACEILR-------DWLRY-TPAYAHLVTPAEEGAGGAGLGPSKRILGS------LLSDSLFLEV 200 (368)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHT-STTTGGGCC---------------CTTHH------HHHHHHHHHH
T ss_pred ---------HcCCHHHHHHHHH-------HHHHh-CcCcHHHHHHHHHHhhhhcccHHHHHHHH------HhhcccHHHH
Confidence 7899999999995 33332 1112222221 1222 3367777888
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
...|+++.+.. |+.. +..+|.. +...|.+.|++++|.+.|+++....
T Consensus 201 ~~~~~~a~~~~--p~~~-----------------------------~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~- 247 (368)
T 1fch_A 201 KELFLAAVRLD--PTSI-----------------------------DPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVR- 247 (368)
T ss_dssp HHHHHHHHHHS--TTSC-----------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHhC--cCcc-----------------------------cHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 88777776542 2210 1223334 6677777888888888888777642
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---------
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY--------- 454 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~--------- 454 (687)
+.+..+|..+...+.+.|++++|...|++..... +.+...|..+...|.+.|+.++|...|+...+..-.
T Consensus 248 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 326 (368)
T 1fch_A 248 PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG 326 (368)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence 2356778888888888888888888888776642 234567777777888888888888888777653211
Q ss_pred -CCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 455 -PEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 455 -pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
....+|..|..+|.+.|+.++|..++.
T Consensus 327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 354 (368)
T 1fch_A 327 AMSENIWSTLRLALSMLGQSDAYGAADA 354 (368)
T ss_dssp CCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred chhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence 125777888888888888887777655
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.2e-10 Score=120.12 Aligned_cols=245 Identities=9% Similarity=-0.050 Sum_probs=189.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
...|..+...+.+.|++++|+.+|+++.... +.+..+|..+-..|. ..|++++|...|. +..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~----------~~g~~~~A~~~~~-------~al 126 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQA----------ENENEQAAIVALQ-------RCL 126 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH----------HCCCHHHHHHHHH-------HHH
Confidence 3568888899999999999999999999764 447888999999999 8899999999995 433
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
.. .-.+...|..+... +...|++++|...|+++.+.. |+..... .... ..
T Consensus 127 ~~-~p~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~--p~~~~~~--~~~~-------------------~~ 176 (365)
T 4eqf_A 127 EL-QPNNLKALMALAVS------YTNTSHQQDACEALKNWIKQN--PKYKYLV--KNKK-------------------GS 176 (365)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------------------
T ss_pred hc-CCCCHHHHHHHHHH------HHccccHHHHHHHHHHHHHhC--ccchHHH--hhhc-------------------cc
Confidence 32 22255668888888 999999999999999988753 3322111 0000 00
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
...++. +...|.+.|++++|.++|+++...... ++..+|..+...|.+.|++++|.+.|++..+.. +.+..+|..+.
T Consensus 177 ~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 254 (365)
T 4eqf_A 177 PGLTRR-MSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLG 254 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 112223 567888999999999999999986432 268899999999999999999999999988763 34578899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|.+.|++++|.+.|+.+.+.. +.+..+|..+...|.+.|++++|...|++....
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999998763 235888999999999999999999999998765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=5.5e-10 Score=118.29 Aligned_cols=258 Identities=10% Similarity=-0.063 Sum_probs=197.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.++|+.+.... +.+..+|..+...+.+.|++++|+..|+++.... +.+..+|..+...|.
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~- 144 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT- 144 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH-
Confidence 4557889999999999997642 2245899999999999999999999999998763 345888999999999
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCc----------cchhccccccccccccccCCChhhHHHHHH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNN----------GQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~----------~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
..|+.++|...|. +.... .-.+. ..++.+... +.+.|++++|..+|+
T Consensus 145 ---------~~g~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~ 201 (365)
T 4eqf_A 145 ---------NTSHQQDACEALK-------NWIKQ-NPKYKYLVKNKKGSPGLTRRMSKS------PVDSSVLEGVKELYL 201 (365)
T ss_dssp ---------HTTCHHHHHHHHH-------HHHHH-CHHHHCC-------------------------CCHHHHHHHHHHH
T ss_pred ---------ccccHHHHHHHHH-------HHHHh-CccchHHHhhhccchHHHHHHHHH------HhhhhhHHHHHHHHH
Confidence 8899999999995 33221 10111 123334566 889999999999999
Q ss_pred HHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHH
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA 388 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ 388 (687)
++.+.. |+. ++..+|.. +...|.+.|++++|.+.|++..+.. +.+..
T Consensus 202 ~al~~~--p~~-----------------------------~~~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~ 248 (365)
T 4eqf_A 202 EAAHQN--GDM-----------------------------IDPDLQTG-LGVLFHLSGEFNRAIDAFNAALTVR-PEDYS 248 (365)
T ss_dssp HHHHHS--CSS-----------------------------CCHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHhC--cCc-----------------------------cCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 988753 321 12334445 7788999999999999999998753 34688
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-----------YPEE 457 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-----------~pd~ 457 (687)
+|+.+...|.+.|++++|...|++..+.. +.+..+|..+...|.+.|+.++|.+.|+.+.+..- ..+.
T Consensus 249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 327 (365)
T 4eqf_A 249 LWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISG 327 (365)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------C
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHH
Confidence 99999999999999999999999988762 23477899999999999999999999999876421 1136
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHH
Q 005628 458 PELEALLRVSVEAGKGDRVYYLLHK 482 (687)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~ 482 (687)
..|..|-.++...|+.+.+..+..+
T Consensus 328 ~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 328 NIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7899999999999999988776553
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.2e-09 Score=115.15 Aligned_cols=274 Identities=9% Similarity=-0.027 Sum_probs=196.2
Q ss_pred cCCCchhh-hHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccC
Q 005628 164 TNDSGQYK-VRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVG 242 (687)
Q Consensus 164 ~~~~~A~~-v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~ 242 (687)
++.++|.+ .|+..... .++. ...+...|..+-..+.+.|++++|+.+|+++.+.. +.+..+|..+-..|.
T Consensus 39 ~~~~~a~~~~~~~a~~~--~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~----- 109 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQF--EEEN-PLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----- 109 (368)
T ss_dssp -------CHHHHCCCCC--CSSC-TTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH-----
T ss_pred HHHHHHHhhhhhHHHhc--CCCC-cccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-----
Confidence 46667777 66654321 1211 11123567788889999999999999999999763 446778888888888
Q ss_pred CcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcccc
Q 005628 243 VVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMK 322 (687)
Q Consensus 243 ~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty 322 (687)
..|+.++|...|. +.... .-.+...|..+... +...|++++|...|+++.... |+....
T Consensus 110 -----~~g~~~~A~~~~~-------~al~~-~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 168 (368)
T 1fch_A 110 -----ENEQELLAISALR-------RCLEL-KPDNQTALMALAVS------FTNESLQRQACEILRDWLRYT--PAYAHL 168 (368)
T ss_dssp -----HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTGGG
T ss_pred -----HCcCHHHHHHHHH-------HHHhc-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--cCcHHH
Confidence 8899999999995 33332 22255668888888 999999999999999998754 333222
Q ss_pred chhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHcC
Q 005628 323 LNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMSMG 401 (687)
Q Consensus 323 ~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~~g 401 (687)
. ... +... ....+.. .+. .+..+...|++++|.++|+++...... ++..+|..+...|.+.|
T Consensus 169 ~--~~~-~~~~-----------~~~~~~~-~~~--~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g 231 (368)
T 1fch_A 169 V--TPA-EEGA-----------GGAGLGP-SKR--ILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG 231 (368)
T ss_dssp C--C----------------------------C--TTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred H--HHH-HHHh-----------hhhcccH-HHH--HHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcC
Confidence 1 000 0000 0000000 000 223334889999999999999875432 25889999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 005628 402 DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLH 481 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~ 481 (687)
++++|...|++..... +.+..+|..+...|.+.|+.++|.+.|+.+.+.. +.+...|..+...|.+.|++++|...|+
T Consensus 232 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 309 (368)
T 1fch_A 232 EYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFL 309 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999988762 2356789999999999999999999999998753 3467899999999999999999999999
Q ss_pred HHHhc
Q 005628 482 KLRTS 486 (687)
Q Consensus 482 ~M~~~ 486 (687)
+....
T Consensus 310 ~al~~ 314 (368)
T 1fch_A 310 EALNM 314 (368)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.15 E-value=5.4e-09 Score=107.81 Aligned_cols=246 Identities=8% Similarity=-0.083 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..|-.+-..+.+.|++++|+.+|+++.+.. +-+...+..+...+. ..|+.++|...|. +...
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQA----------ENEKDGLAIIALN-------HARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HHHh
Confidence 455667778899999999999999998763 346778888888888 7899999999995 3333
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCCh
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (687)
. .-.+...|..+... +...|++++|...|++..+.. |+..... ..+. ...|+.
T Consensus 84 ~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~~~~~~--~~~~----------------~~~~~~ 136 (327)
T 3cv0_A 84 L-DPKDIAVHAALAVS------HTNEHNANAALASLRAWLLSQ--PQYEQLG--SVNL----------------QADVDI 136 (327)
T ss_dssp H-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHTS--TTTTTC-----------------------------
T ss_pred c-CcCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHhC--CccHHHH--HHHh----------------HHHHHH
Confidence 2 22245567777777 999999999999999988753 3322221 0000 000111
Q ss_pred hhhHHHH-HH-HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 352 QDADEIR-LS-EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 352 ~tyn~~l-I~-~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
..... + .. .+...|++++|.++|+++.+.. +.+..++..+...|.+.|++++|...++++.... ..+..+|..+.
T Consensus 137 ~~~~~-~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 213 (327)
T 3cv0_A 137 DDLNV-QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLG 213 (327)
T ss_dssp ----------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHH-HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 11111 2 12 3778899999999999998764 3478899999999999999999999999988763 23567899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...|+.++|.+.|+++.+.. ..+...|..+...|.+.|++++|...|++....
T Consensus 214 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 269 (327)
T 3cv0_A 214 ATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999988753 336788999999999999999999999998876
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.7e-11 Score=129.66 Aligned_cols=218 Identities=13% Similarity=0.085 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~ 272 (687)
.-+.||. +.|++++|.++++++ +++.+|..|..++. +.|++++|.+.|.
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~------~~~~vWs~La~A~l----------~~g~~~eAIdsfi------------ 56 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQL----------QKGMVKEAIDSYI------------ 56 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhC------CChHHHHHHHHHHH----------HcCCHHHHHHHHH------------
Confidence 3445554 568899999999998 33459999999999 8999999999994
Q ss_pred CCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChh
Q 005628 273 RDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (687)
Q Consensus 273 ~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~ 352 (687)
..+|..+|..++.+ +...|++++|...++...+. .|+..+.+
T Consensus 57 -ka~D~~~y~~V~~~------ae~~g~~EeAi~yl~~ark~--~~~~~i~~----------------------------- 98 (449)
T 1b89_A 57 -KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKK--ARESYVET----------------------------- 98 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -cCCCHHHHHHHHHH------HHhCCCHHHHHHHHHHHHHh--CccchhHH-----------------------------
Confidence 33466689999999 99999999999966654442 33333333
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
. |+.+|.+.|+++++.++++ .|+..+|+.+-+.|...|++++|..+|..+ ..|..|..++
T Consensus 99 ---~-Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L 158 (449)
T 1b89_A 99 ---E-LIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTL 158 (449)
T ss_dssp --------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHH
T ss_pred ---H-HHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHH
Confidence 4 8999999999999998885 388889999999999999999999999976 4899999999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh-HHHHHHHHHcCHHHHHh
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS-TADVIAKWFNSKEAARL 510 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~-t~~~I~~~~~~~~~~~a 510 (687)
++.|++++|.+.+..+ -++.+|..++.+|+..|+++.|...... ....|+ ...++.-+-+.|...++
T Consensus 159 ~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~eEa 226 (449)
T 1b89_A 159 VHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEEL 226 (449)
T ss_dssp HTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHHHH
Confidence 9999999999999998 3899999999999999999999655443 235566 33445555555554444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-09 Score=116.09 Aligned_cols=263 Identities=10% Similarity=0.004 Sum_probs=208.6
Q ss_pred hhcCCCchhhhHHHhhh-----cCCCCCCC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 005628 162 QRTNDSGQYKVRGITDE-----KGSKKSKK--DRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLY 234 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~-----~g~~~~~g--~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~ 234 (687)
+.++.++|.++|+.+.. ....|+.. .+.+...|..+...+.+.|++++|+.+|+++.... |+...|..+..
T Consensus 201 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~ 278 (514)
T 2gw1_A 201 SPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMAL 278 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHH
Confidence 36889999999999866 21122211 02345788899999999999999999999999765 44888888888
Q ss_pred HHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcC
Q 005628 235 LCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG 314 (687)
Q Consensus 235 ~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g 314 (687)
.|. ..|+.++|...+. +.... .-.+...|..+... +...|++++|...|++..+..
T Consensus 279 ~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~~~~~~ 334 (514)
T 2gw1_A 279 IMA----------DRNDSTEYYNYFD-------KALKL-DSNNSSVYYHRGQM------NFILQNYDQAGKDFDKAKELD 334 (514)
T ss_dssp HHH----------TSSCCTTGGGHHH-------HHHTT-CTTCTHHHHHHHHH------HHHTTCTTHHHHHHHHHHHTC
T ss_pred HHH----------HCCCHHHHHHHHH-------HHhhc-CcCCHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHhC
Confidence 888 8899999999995 43332 22255568888888 999999999999999887653
Q ss_pred CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 315 QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 315 ~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
|+. ...+.. +...|.+.|++++|.++|+++.+.. +.+..+|..+.
T Consensus 335 --~~~-------------------------------~~~~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 379 (514)
T 2gw1_A 335 --PEN-------------------------------IFPYIQ-LACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFA 379 (514)
T ss_dssp --SSC-------------------------------SHHHHH-HHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHH
T ss_pred --hhh-------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHH
Confidence 221 123334 7788899999999999999998753 23567899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcC-CCCC----cchHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCN---NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g-~~Pd----~~ty~~lI~~~~~---~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
..|.+.|++++|...++.+.... -.|+ ...|..+...+.. .|++++|.+.|+.+.+.. ..+...|..+...
T Consensus 380 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 458 (514)
T 2gw1_A 380 EILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQM 458 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 99999999999999999987642 1122 3389999999999 999999999999998763 3367888999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|.+.|++++|...|++....
T Consensus 459 ~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 459 KLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999987
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-09 Score=111.91 Aligned_cols=125 Identities=17% Similarity=0.099 Sum_probs=71.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH---HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL---TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN 434 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty---n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~ 434 (687)
+...|.+.|++++|.+.|+++.+.. |+...+ .+.+..+...|++++|..+|+++.+. .+.+...|+.+-.++.+
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHH
Confidence 5556666666666666666666543 332211 12223333346666666666666655 33455566666666666
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHhc
Q 005628 435 NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDR-VYYLLHKLRTS 486 (687)
Q Consensus 435 ~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~-A~~ll~~M~~~ 486 (687)
.|++++|.+.|++..+.. +-+..++..++..+...|+.++ +.++++++...
T Consensus 213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 666666666666665542 2245566666666666666654 45666666654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.11 E-value=2.5e-09 Score=110.73 Aligned_cols=237 Identities=10% Similarity=0.002 Sum_probs=177.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCC
Q 005628 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQ--YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM 275 (687)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~Gi~pd~--~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~ 275 (687)
|+-.--.|++..|+..++... ...|+. ...-.+..+|. ..|+.+.|...+. .. .-
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi----------~~g~~~~al~~~~-------~~----~~ 62 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYL----------AQRKYGVVLDEIK-------PS----SA 62 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHH----------HTTCHHHHHHHSC-------TT----SC
T ss_pred HHHHHHHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHH----------HCCCHHHHHHHhc-------cc----CC
Confidence 344456789999998887653 234443 24455667777 6788888888774 10 11
Q ss_pred CCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhH
Q 005628 276 DNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDAD 355 (687)
Q Consensus 276 ~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn 355 (687)
++..++..+... ++..++.++|.+.++++...++.|+...+.
T Consensus 63 ~~~~a~~~la~~------~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~-------------------------------- 104 (291)
T 3mkr_A 63 PELQAVRMFAEY------LASHSRRDAIVAELDREMSRSVDVTNTTFL-------------------------------- 104 (291)
T ss_dssp HHHHHHHHHHHH------HHCSTTHHHHHHHHHHHHHSCCCCSCHHHH--------------------------------
T ss_pred hhHHHHHHHHHH------HcCCCcHHHHHHHHHHHHhcccCCCCHHHH--------------------------------
Confidence 145567777777 899999999999999999887777765442
Q ss_pred HHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH---HHHHHHH
Q 005628 356 EIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY---GPALSVF 432 (687)
Q Consensus 356 ~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty---~~lI~~~ 432 (687)
..+-..|...|++++|.+.|++ +.+...+..+...|.+.|++++|...|+.+.+.. |+...+ ...+..+
T Consensus 105 ~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~ 176 (291)
T 3mkr_A 105 LMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLA 176 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHH
Confidence 2244778899999999999997 5788899999999999999999999999998773 665322 2233444
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCC-ChhHH-HHHHHHHcCHH
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKV-SPSTA-DVIAKWFNSKE 506 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~-~p~t~-~~I~~~~~~~~ 506 (687)
...|++++|..+|+++.+. .+.+...|+.+-.++.+.|++++|...|++.... .+ .|+++ +.+..+...|.
T Consensus 177 ~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~--~p~~~~~l~~l~~~~~~~g~ 249 (291)
T 3mkr_A 177 AGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK--DSGHPETLINLVVLSQHLGK 249 (291)
T ss_dssp HCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred hCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 5569999999999999987 4568899999999999999999999999998876 32 34444 44444444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.9e-09 Score=108.30 Aligned_cols=234 Identities=11% Similarity=-0.109 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..+..+...+...|++++|+++|+++.... +.+...+..+...+. ..|+.++|...+. ++..
T Consensus 23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~ 84 (330)
T 3hym_B 23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLV----------ELNKANELFYLSH-------KLVD 84 (330)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHH----------HHTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHH----------HhhhHHHHHHHHH-------HHHH
Confidence 566778888889999999999999998753 234445566667777 6789999999995 4433
Q ss_pred cCCCCCccchhccccccccccccccCC-ChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSY-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g-~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
. .-.+...|..+-.. +...| ++++|...|++..+.. |+.
T Consensus 85 ~-~~~~~~~~~~l~~~------~~~~~~~~~~A~~~~~~a~~~~--~~~------------------------------- 124 (330)
T 3hym_B 85 L-YPSNPVSWFAVGCY------YLMVGHKNEHARRYLSKATTLE--KTY------------------------------- 124 (330)
T ss_dssp H-CTTSTHHHHHHHHH------HHHSCSCHHHHHHHHHHHHTTC--TTC-------------------------------
T ss_pred h-CcCCHHHHHHHHHH------HHHhhhhHHHHHHHHHHHHHhC--Ccc-------------------------------
Confidence 2 22255567777777 88889 9999999999887642 221
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
...|.. +...|...|++++|.+.|++...... .+...+..+...|...|++++|...+++..... +.+...|..+..
T Consensus 125 ~~~~~~-l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~ 201 (330)
T 3hym_B 125 GPAWIA-YGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGV 201 (330)
T ss_dssp THHHHH-HHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 223334 77889999999999999999987642 245677779999999999999999999988753 345688999999
Q ss_pred HHHhCCChHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGDVDKACSVEEHMLEHG--------VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~g--------v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+...|++++|...+++..+.. ...+...|..+...|.+.|++++|...|++....
T Consensus 202 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 202 VAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 9999999999999999987642 1344679999999999999999999999999887
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-08 Score=103.30 Aligned_cols=257 Identities=9% Similarity=0.001 Sum_probs=170.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.+.|+...... +.+...|..+-..+.+.|++++|+..|+++.+.. +-+...|..+-..+.
T Consensus 12 ~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~- 82 (359)
T 3ieg_A 12 KLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL- 82 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH-
Confidence 4457789999999999986542 1235789999999999999999999999998763 236678888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCC---CCccchhcc------------ccccccccccccCCChhhH
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDM---DNNGQLDYG------------SSPMIDKLESNSSYRFDDL 303 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~---~d~~tyn~L------------i~~~~~~~~~~~~g~~~~A 303 (687)
..|+.++|...|. +.... .- .+...|..+ ... +...|++++|
T Consensus 83 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~------~~~~~~~~~A 139 (359)
T 3ieg_A 83 ---------KQGKLDEAEDDFK-------KVLKS-NPSEQEEKEAESQLVKADEMQRLRSQALD------AFDGADYTAA 139 (359)
T ss_dssp ---------HHTCHHHHHHHHH-------HHHTS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHTTCHHHH
T ss_pred ---------HcCChHHHHHHHH-------HHHhc-CCcccChHHHHHHHHHHHHHHHHHHHHHH------HHHccCHHHH
Confidence 7899999999995 33332 11 122223333 244 7889999999
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
..+|+++.+.. |+. ...+.. +...|...|++++|.+.|++.....
T Consensus 140 ~~~~~~~~~~~--~~~-------------------------------~~~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~- 184 (359)
T 3ieg_A 140 ITFLDKILEVC--VWD-------------------------------AELREL-RAECFIKEGEPRKAISDLKAASKLK- 184 (359)
T ss_dssp HHHHHHHHHHC--TTC-------------------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhC--CCc-------------------------------hHHHHH-HHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99999987653 222 112223 5566666777777777777766542
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-hHH------------HHHHHHHhCCChHHHHHHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-SYG------------PALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-ty~------------~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+.+..+|..+...+...|++++|...|+...+.. |+.. .+. .+...+.+.|+.++|.+.++.+.+
T Consensus 185 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 185 SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3456667777777777777777777777666542 3221 121 124446667777777777777665
Q ss_pred CCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEE-----PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~-----~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. |+. ..|..+-..|.+.|++++|...+++....
T Consensus 263 ~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 263 TE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 43 222 12334556666777777777777776665
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.5e-08 Score=100.66 Aligned_cols=225 Identities=12% Similarity=0.009 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..|..+-..+.+.|++++|+.+|+++.+.. .+...|..+-..|. ..|+.++|...|. +...
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~----------~~~~~~~A~~~~~-------~a~~ 66 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEY----------EKGEYETAISTLN-------DAVE 66 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHH
Confidence 578888899999999999999999999887 78889999999999 7899999999995 2222
Q ss_pred c-CCCC-C----ccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc
Q 005628 272 S-RDMD-N----NGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (687)
Q Consensus 272 ~-~g~~-d----~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (687)
. .... + ...|..+-.. +.+.|++++|...|++..... |+.
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~~-------------------------- 112 (258)
T 3uq3_A 67 QGREMRADYKVISKSFARIGNA------YHKLGDLKKTIEYYQKSLTEH--RTA-------------------------- 112 (258)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--CCH--------------------------
T ss_pred hCcccccchHHHHHHHHHHHHH------HHHcccHHHHHHHHHHHHhcC--chh--------------------------
Confidence 1 0110 1 3457777777 999999999999999887642 221
Q ss_pred CCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 346 DWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 346 g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
..+.+.|++++|.+.|+++.... +.+...|..+...+...|++++|...|++..... ..+...|
T Consensus 113 --------------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 176 (258)
T 3uq3_A 113 --------------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGY 176 (258)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred --------------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHH
Confidence 23456788999999999998753 2345678899999999999999999999988763 2356789
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...|.+.|++++|.+.|+...+.. +.+...|..+-..|.+.|++++|...|++....
T Consensus 177 ~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 177 SNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999999999998764 335788999999999999999999999988766
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-07 Score=94.23 Aligned_cols=201 Identities=9% Similarity=-0.027 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
...|..+...+...|++++|+++|+++.... +.+...|..+...|. ..|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~----------~~~-------------------- 85 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQ----------TEM-------------------- 85 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTT--------------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHH----------HcC--------------------
Confidence 3677888888999999999999999988753 234555655555555 344
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
++++|...|++..+.. |+ +
T Consensus 86 ----------------------------~~~~A~~~~~~a~~~~--~~-------------------------------~ 104 (252)
T 2ho1_A 86 ----------------------------EPKLADEEYRKALASD--SR-------------------------------N 104 (252)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHC--TT-------------------------------C
T ss_pred ----------------------------CHHHHHHHHHHHHHHC--cC-------------------------------c
Confidence 4445555554444331 11 1
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
...|.. +...|...|++++|.++|+++...+..| +...|..+...+.+.|++++|...|++..... ..+...|..+.
T Consensus 105 ~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la 182 (252)
T 2ho1_A 105 ARVLNN-YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMA 182 (252)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 123334 6677888999999999999998744445 46778888999999999999999999988763 23567888899
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|...|+.++|..+++.+.+.. ..+...+..+...+.+.|+.++|..+++++...
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 99999999999999999987753 356778888999999999999999999999887
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.3e-07 Score=89.84 Aligned_cols=202 Identities=9% Similarity=-0.018 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
...|..+...+.+.|++++|+++|+++.... +.+...|..+...|. ..|+.++|...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~----------~~~~~~~A~~~------------ 64 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQ----------YLKVNDKAQES------------ 64 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCHHHHHHH------------
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH----------HcCChHHHHHH------------
Confidence 4678888999999999999999999998753 234566666655555 44445555444
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
|++..+.. |+ +
T Consensus 65 ------------------------------------~~~a~~~~--~~-------------------------------~ 75 (225)
T 2vq2_A 65 ------------------------------------FRQALSIK--PD-------------------------------S 75 (225)
T ss_dssp ------------------------------------HHHHHHHC--TT-------------------------------C
T ss_pred ------------------------------------HHHHHHhC--CC-------------------------------C
Confidence 44443321 11 1
Q ss_pred hhhhHHHHHHHHHhh-ccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHH
Q 005628 351 NQDADEIRLSEDAKK-YAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~-g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
..++.. +...|... |++++|.+.|+++.+.+..|+ ...|..+...+...|++++|...|+++.+.. ..+...+..+
T Consensus 76 ~~~~~~-l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 153 (225)
T 2vq2_A 76 AEINNN-YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKEL 153 (225)
T ss_dssp HHHHHH-HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hHHHHH-HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHH
Confidence 223334 66778888 999999999999887433343 6778888999999999999999999887753 2346778888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...+.+.|+.++|.++++.+.+..-..+...+..+...+...|+.++|..+++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 8899999999999999999887543257777888888889999999999999998765
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.95 E-value=2.2e-07 Score=96.66 Aligned_cols=257 Identities=7% Similarity=-0.086 Sum_probs=196.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH--
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKL----GQYHYNVL-- 232 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~p----d~~tyn~L-- 232 (687)
.....++.++|.+.|+...+.. | -+...|..+-..+.+.|++++|+..|+++.+. .| +...+..+
T Consensus 46 ~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~ 116 (359)
T 3ieg_A 46 VFLAMGKSKAALPDLTKVIALK--M-----DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK 116 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC--C-----CcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH
Confidence 4457789999999999986542 1 13478999999999999999999999999864 45 33444443
Q ss_pred ----------HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhh
Q 005628 233 ----------LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDD 302 (687)
Q Consensus 233 ----------l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~ 302 (687)
...+. ..|+.++|...|. +.... .-.+...|..+-.. +...|++++
T Consensus 117 ~~~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~ 172 (359)
T 3ieg_A 117 ADEMQRLRSQALDAF----------DGADYTAAITFLD-------KILEV-CVWDAELRELRAEC------FIKEGEPRK 172 (359)
T ss_dssp HHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHH
T ss_pred HHHHHHHHHHHHHHH----------HccCHHHHHHHHH-------HHHHh-CCCchHHHHHHHHH------HHHCCCHHH
Confidence 24455 7899999999995 43332 22245557777777 899999999
Q ss_pred HHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCC
Q 005628 303 LDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE 382 (687)
Q Consensus 303 A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g 382 (687)
|...|++..+.. |+ +...|.. +...|...|++++|.+.|++..+..
T Consensus 173 A~~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~ 218 (359)
T 3ieg_A 173 AISDLKAASKLK--SD-------------------------------NTEAFYK-ISTLYYQLGDHELSLSEVRECLKLD 218 (359)
T ss_dssp HHHHHHHHHTTC--SC-------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC--CC-------------------------------CHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999887652 22 1223344 7788899999999999999998753
Q ss_pred CCCCHHHHHH------------HHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-----hHHHHHHHHHhCCChHHHHHHH
Q 005628 383 VPMNEASLTA------------VGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----SYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 383 i~pd~~tyn~------------LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-----ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
+.+...+.. +...+.+.|++++|...++...... |+.. .|..+-..+.+.|+.++|.+.+
T Consensus 219 -~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 295 (359)
T 3ieg_A 219 -QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295 (359)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 223333332 3566889999999999999988753 4432 3555678899999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 446 EHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 446 ~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+...+.. +.+...|..+-..|.+.|++++|...|++..+.
T Consensus 296 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 296 SEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 9998863 337889999999999999999999999999887
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-07 Score=104.80 Aligned_cols=292 Identities=9% Similarity=-0.082 Sum_probs=193.7
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
...+.++.++|.+.|+...... +.+...|..+..+|.+.|++++|++.|+++.... +.+..+|..+...+.
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~- 104 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELD-------PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANE- 104 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHhccHHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHH-
Confidence 4557899999999999997642 2245899999999999999999999999998764 346778888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc---------------------------------------
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG--------------------------------------- 279 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~--------------------------------------- 279 (687)
..|+.++|...|... ....+..+..
T Consensus 105 ---------~~g~~~~A~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~ 168 (537)
T 3fp2_A 105 ---------SLGNFTDAMFDLSVL-------SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168 (537)
T ss_dssp ---------HHTCHHHHHHHHHHH-------C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH
T ss_pred ---------HcCCHHHHHHHHHHH-------hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH
Confidence 788999999888411 1100000000
Q ss_pred -----------------------chhcccccccccccccc--------CCChhhHHHHHHHHHhcCCCCCccc-cchhhH
Q 005628 280 -----------------------QLDYGSSPMIDKLESNS--------SYRFDDLDSTFNEKENLGQFSNGHM-KLNSQL 327 (687)
Q Consensus 280 -----------------------tyn~Li~~~~~~~~~~~--------~g~~~~A~~lf~eM~~~g~~Pd~~t-y~~~~l 327 (687)
.+..+..+ ....+.. .|++++|..+|+++.+.. |+... +. .+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~--~~ 242 (537)
T 3fp2_A 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDA--LQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRE--NA 242 (537)
T ss_dssp HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH--HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHH--HH
T ss_pred HHHHhcChHHHHHHHhhccccccHHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhH--HH
Confidence 00000000 0000000 125566666666665432 22111 00 00
Q ss_pred hhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005628 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (687)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~ 407 (687)
..+|.. +-..+...|++++|.+.|++.... .|+..+|..+...+...|++++|.
T Consensus 243 -----------------------~~~~~~-~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~ 296 (537)
T 3fp2_A 243 -----------------------ALALCY-TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFF 296 (537)
T ss_dssp -----------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHH
T ss_pred -----------------------HHHHHH-HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHH
Confidence 112223 446677888999999999998875 466788888888899999999999
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Q 005628 408 DMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSV 487 (687)
Q Consensus 408 ~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~ 487 (687)
..|+...... +.+..+|..+...+...|++++|.+.|+...+.. .-+...|..+...|...|++++|..+|++....
T Consensus 297 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~- 373 (537)
T 3fp2_A 297 KFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK- 373 (537)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9999887653 2356778888889999999999999999888754 224577888889999999999999999988877
Q ss_pred CCCC-hhHHHH-HHHHHcCHHHHHhh
Q 005628 488 RKVS-PSTADV-IAKWFNSKEAARLG 511 (687)
Q Consensus 488 ~g~~-p~t~~~-I~~~~~~~~~~~a~ 511 (687)
.+. +..+.. -..+...+...+|.
T Consensus 374 -~~~~~~~~~~l~~~~~~~g~~~~A~ 398 (537)
T 3fp2_A 374 -FPTLPEVPTFFAEILTDRGDFDTAI 398 (537)
T ss_dssp -CTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred -CCCChHHHHHHHHHHHHhCCHHHHH
Confidence 332 224333 34444444444433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=98.87 E-value=8.6e-08 Score=106.48 Aligned_cols=256 Identities=11% Similarity=0.020 Sum_probs=197.1
Q ss_pred cCCCchhhhHHHhhhcCCCCCCCCCCc-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 164 TNDSGQYKVRGITDEKGSKKSKKDRSE-----QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 164 ~~~~~A~~v~~~M~~~g~~~~~g~~P~-----~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
++..+|.++|+.+.+.. |+ .|+ ..+|..+-..+...|++++|+..|+++... .|+...|..+-..|.
T Consensus 216 ~~~~~A~~~~~~~l~~~--p~---~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~- 287 (537)
T 3fp2_A 216 DLLTKSTDMYHSLLSAN--TV---DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLA- 287 (537)
T ss_dssp HHHHHHHHHHHHHHC----CC---CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHC--CC---cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHH-
Confidence 47788999999985432 11 111 235777778889999999999999999975 466777877777777
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|+.++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+.. |+
T Consensus 288 ---------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~--~~ 342 (537)
T 3fp2_A 288 ---------DKENSQEFFKFFQ-------KAVDL-NPEYPPTYYHRGQM------YFILQDYKNAKEDFQKAQSLN--PE 342 (537)
T ss_dssp ---------CSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ---------HhcCHHHHHHHHH-------HHhcc-CCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHhC--CC
Confidence 8899999999995 33332 22255568888888 999999999999999887753 22
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
. ...|.. +...|.+.|++++|.++|+++.+.. +.+...|..+...+.
T Consensus 343 ~-------------------------------~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 343 N-------------------------------VYPYIQ-LACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp C-------------------------------SHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred C-------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 1 123334 7788899999999999999998764 345678999999999
Q ss_pred HcCChHHHHHHHHHHHHcC-----CCCCcchHHHHHHHHHhC----------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNN----------GDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~~~----------g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
..|++++|...|++..... ..-....+..+-..+.+. |++++|...|+...+.. +.+...|..+
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l 468 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGL 468 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 9999999999999987542 111122234445667777 99999999999998763 3467889999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|.+.|++++|...|++....
T Consensus 469 ~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 469 AQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999999999999887
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=4e-08 Score=98.76 Aligned_cols=222 Identities=10% Similarity=-0.091 Sum_probs=164.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc
Q 005628 203 KRGDVMGAIRLYDKAQREGIK---LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~---pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
..|++++|+..|+++.+.... .+..+|..+-..|. ..|+.++|...|. +.... .-.+..
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~-------~al~~-~~~~~~ 78 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD----------SLGLRALARNDFS-------QALAI-RPDMPE 78 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CCCCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHc-CCCcHH
Confidence 347888999999988875321 13566777777777 7888999988884 33332 222455
Q ss_pred chhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHH
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
.|..+-.. +...|++++|...|++..+.. |+ +...|.. +.
T Consensus 79 ~~~~la~~------~~~~~~~~~A~~~~~~al~~~--~~-------------------------------~~~~~~~-la 118 (275)
T 1xnf_A 79 VFNYLGIY------LTQAGNFDAAYEAFDSVLELD--PT-------------------------------YNYAHLN-RG 118 (275)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TT-------------------------------CTHHHHH-HH
T ss_pred HHHHHHHH------HHHccCHHHHHHHHHHHHhcC--cc-------------------------------ccHHHHH-HH
Confidence 67777777 889999999999999887642 22 1223344 77
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..|.+.|++++|.+.|+++.+. .|+...+...+..+...|++++|...++..... ..++...| .++..+...++.+
T Consensus 119 ~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~ 194 (275)
T 1xnf_A 119 IALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-SDKEQWGW-NIVEFYLGNISEQ 194 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-SCCCSTHH-HHHHHHTTSSCHH
T ss_pred HHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCcchHHH-HHHHHHHHhcCHH
Confidence 8899999999999999999874 355555556666667789999999999877765 23444444 4777888889999
Q ss_pred HHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~p---d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.++...+..... +...|..+-..|.+.|++++|...|++....
T Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 195 TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999886542211 1578889999999999999999999999877
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.73 E-value=1.9e-07 Score=91.86 Aligned_cols=201 Identities=11% Similarity=0.031 Sum_probs=145.5
Q ss_pred CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHH
Q 005628 225 GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLD 304 (687)
Q Consensus 225 d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~ 304 (687)
...+|..+-..+. ..|++++|...|. +.... .-.+...|..+... +...|++++|.
T Consensus 22 ~~~~~~~~a~~~~----------~~~~~~~A~~~~~-------~~l~~-~~~~~~~~~~la~~------~~~~~~~~~A~ 77 (243)
T 2q7f_A 22 ASMTGGQQMGRGS----------EFGDYEKAAEAFT-------KAIEE-NKEDAIPYINFANL------LSSVNELERAL 77 (243)
T ss_dssp ------------------------------CCTTHH-------HHHTT-CTTCHHHHHHHHHH------HHHTTCHHHHH
T ss_pred HHHHHHHHHHHHH----------HhhCHHHHHHHHH-------HHHHh-CcccHHHHHHHHHH------HHHcCCHHHHH
Confidence 3444555555555 7889999999985 44332 22255567777777 88999999999
Q ss_pred HHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC
Q 005628 305 STFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP 384 (687)
Q Consensus 305 ~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~ 384 (687)
..|++..+.. |+ +...|.. +...|...|++++|.++|+++.+.. +
T Consensus 78 ~~~~~~~~~~--~~-------------------------------~~~~~~~-la~~~~~~~~~~~A~~~~~~~~~~~-~ 122 (243)
T 2q7f_A 78 AFYDKALELD--SS-------------------------------AATAYYG-AGNVYVVKEMYKEAKDMFEKALRAG-M 122 (243)
T ss_dssp HHHHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHT-C
T ss_pred HHHHHHHHcC--Cc-------------------------------chHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-C
Confidence 9999887652 21 1223334 6778889999999999999998754 3
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
.+...|..+...+.+.|++++|..+++++.... ..+...|..+...+.+.|+.++|.+.|+++.+.. ..+..+|..+.
T Consensus 123 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 200 (243)
T 2q7f_A 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAG 200 (243)
T ss_dssp CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 467889999999999999999999999988763 2356788889999999999999999999988763 34678899999
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 005628 465 RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|.+.|++++|...|++....
T Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 201 VTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHcc
Confidence 9999999999999999999887
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2.7e-07 Score=94.13 Aligned_cols=246 Identities=8% Similarity=-0.059 Sum_probs=143.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVS 262 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~ 262 (687)
+..+|..+...+...|++++|+.+|+++... .-......+..+-..|. ..|+.++|...+.
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~----------~~g~~~~A~~~~~-- 93 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKDAANLLN-- 93 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH----------HCCCHHHHHHHHH--
Confidence 4578899999999999999999999999863 22334456667777777 6788888888874
Q ss_pred cccccccccc------CCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcccccc
Q 005628 263 TMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE 335 (687)
Q Consensus 263 ~~~s~em~~~------~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a 335 (687)
+.... ..-+ ....|..+-.. +...|++++|...|++..+....
T Consensus 94 -----~al~~~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~a~~~~~~------------------- 143 (311)
T 3nf1_A 94 -----DALAIREKTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIREK------------------- 143 (311)
T ss_dssp -----HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHHH-------------------
T ss_pred -----HHHHHHHHHhCCCChHHHHHHHHHHHH------HHHcCcHHHHHHHHHHHHHHHHH-------------------
Confidence 22111 0111 23346666666 77777777777777766542100
Q ss_pred CCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHH
Q 005628 336 RGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAF 407 (687)
Q Consensus 336 ~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~tyn~LI~~~~~~g~~~~A~ 407 (687)
.. .+-.| ....+.. +-..|...|++++|.++|++.... +-.| ...++..+...|...|++++|.
T Consensus 144 ------~~-~~~~~~~~~~~~~-la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 215 (311)
T 3nf1_A 144 ------VL-GKDHPDVAKQLNN-LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAE 215 (311)
T ss_dssp ------HH-CTTCHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ------hc-CCCChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 00 00011 1234444 566777777777777777777653 1122 2346677777777777777777
Q ss_pred HHHHHHHHc-------CCCCCcchHHHHHHHH-------HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 005628 408 DMVKRMKSL-------GINPRLRSYGPALSVF-------CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKG 473 (687)
Q Consensus 408 ~l~~~M~~~-------g~~Pd~~ty~~lI~~~-------~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~ 473 (687)
..|++.... ...|........+..+ ...+.+.+|...++..... -..+..+|..|...|.+.|++
T Consensus 216 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~ 294 (311)
T 3nf1_A 216 TLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKF 294 (311)
T ss_dssp HHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCH
Confidence 777776642 1222222222222222 2233333344444443322 122456788899999999999
Q ss_pred HHHHHHHHHHHhc
Q 005628 474 DRVYYLLHKLRTS 486 (687)
Q Consensus 474 ~~A~~ll~~M~~~ 486 (687)
++|..+|++..+.
T Consensus 295 ~~A~~~~~~al~l 307 (311)
T 3nf1_A 295 EAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887653
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=7.5e-08 Score=96.75 Aligned_cols=250 Identities=9% Similarity=-0.086 Sum_probs=180.8
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~ 241 (687)
..++.++|.+.|+.+.+..... .+.+...|..+...+...|++++|+..|+++.... +.+..+|..+-..|.
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~---- 88 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALT---DDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLT---- 88 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH----
T ss_pred ccchHHHHHHHHHHHHhccccc---CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHH----
Confidence 3466778999999986542100 11245789999999999999999999999999763 336888999999998
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
..|++++|...|. +.... .-.+...|..+-.. +.+.|++++|...|+++.+.. |+...
T Consensus 89 ------~~~~~~~A~~~~~-------~al~~-~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~a~~~~--~~~~~ 146 (275)
T 1xnf_A 89 ------QAGNFDAAYEAFD-------SVLEL-DPTYNYAHLNRGIA------LYYGGRDKLAQDDLLAFYQDD--PNDPF 146 (275)
T ss_dssp ------HTTCHHHHHHHHH-------HHHHH-CTTCTHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred ------HccCHHHHHHHHH-------HHHhc-CccccHHHHHHHHH------HHHhccHHHHHHHHHHHHHhC--CCChH
Confidence 7899999999995 33332 22255668888888 999999999999999988752 44332
Q ss_pred cchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC
Q 005628 322 KLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG 401 (687)
Q Consensus 322 y~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g 401 (687)
+. . .+..+...|++++|...|++..... +++...+. ++..+...+
T Consensus 147 ~~--------------------------------~-~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~ 191 (275)
T 1xnf_A 147 RS--------------------------------L-WLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNI 191 (275)
T ss_dssp HH--------------------------------H-HHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSS
T ss_pred HH--------------------------------H-HHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhc
Confidence 21 1 3344466799999999998877643 34444454 777778888
Q ss_pred ChHHHHHHHHHHHHcCC--CC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005628 402 DGDMAFDMVKRMKSLGI--NP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 402 ~~~~A~~l~~~M~~~g~--~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (687)
+.++|...+........ .| +...|..+-..|.+.|+.++|...|+...+.. |+. +.....++...|++++|..
T Consensus 192 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~ 267 (275)
T 1xnf_A 192 SEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQD 267 (275)
T ss_dssp CHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHH
Confidence 89999999988754321 11 15788899999999999999999999998753 532 2333556677788888776
Q ss_pred HH
Q 005628 479 LL 480 (687)
Q Consensus 479 ll 480 (687)
-+
T Consensus 268 ~~ 269 (275)
T 1xnf_A 268 DL 269 (275)
T ss_dssp --
T ss_pred HH
Confidence 55
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=2e-07 Score=92.34 Aligned_cols=217 Identities=10% Similarity=0.031 Sum_probs=169.5
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREG--IKLG----QYHYNVL 232 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~G--i~pd----~~tyn~L 232 (687)
.....++.++|.+.|+...+.. .+ ...|..+-..+.+.|++++|+..|++..... ..|+ ..+|..+
T Consensus 14 ~~~~~~~~~~A~~~~~~a~~~~--~~------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 14 KFYKARQFDEAIEHYNKAWELH--KD------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS--CC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhh--cc------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3446789999999999997654 33 3789999999999999999999999988642 2233 5788888
Q ss_pred HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHh
Q 005628 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKEN 312 (687)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~ 312 (687)
-..|. ..|+.++|...|. +.... .+. -.. +.+.|++++|...++++..
T Consensus 86 ~~~~~----------~~~~~~~A~~~~~-------~a~~~---~~~------~~~------~~~~~~~~~a~~~~~~~~~ 133 (258)
T 3uq3_A 86 GNAYH----------KLGDLKKTIEYYQ-------KSLTE---HRT------ADI------LTKLRNAEKELKKAEAEAY 133 (258)
T ss_dssp HHHHH----------HTTCHHHHHHHHH-------HHHHH---CCC------HHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH----------HcccHHHHHHHHH-------HHHhc---Cch------hHH------HHHHhHHHHHHHHHHHHHH
Confidence 88888 7899999999995 22221 000 122 6677889999999988776
Q ss_pred cCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHH
Q 005628 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTA 392 (687)
Q Consensus 313 ~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~ 392 (687)
.. |+ +...|.. +-..|...|++++|.+.|++..... +.+..+|..
T Consensus 134 ~~--~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 178 (258)
T 3uq3_A 134 VN--PE-------------------------------KAEEARL-EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSN 178 (258)
T ss_dssp CC--HH-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cC--cc-------------------------------hHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 41 22 1123334 7778889999999999999998754 346889999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
+...|.+.|++++|...|+...+.. +.+...|..+-..+.+.|+.++|.+.|+...+.
T Consensus 179 l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 179 RAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 9999999999999999999988763 234678889999999999999999999988654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=98.70 E-value=3.7e-06 Score=83.29 Aligned_cols=201 Identities=12% Similarity=-0.064 Sum_probs=143.2
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.....++.++|.+.|+...... +.+...|..+...+.+.|++++|+++|+++.... +.+...|..+...|.
T Consensus 46 ~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~- 116 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKALEID-------PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY- 116 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH-
T ss_pred HHHHcCChHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH-
Confidence 4457789999999999986542 2245789999999999999999999999998763 235566666655555
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|+.++|. .+|++....+..|+
T Consensus 117 ---------~~g~~~~A~------------------------------------------------~~~~~~~~~~~~~~ 139 (252)
T 2ho1_A 117 ---------EQKRYEEAY------------------------------------------------QRLLEASQDTLYPE 139 (252)
T ss_dssp ---------HTTCHHHHH------------------------------------------------HHHHHHTTCTTCTT
T ss_pred ---------HHhHHHHHH------------------------------------------------HHHHHHHhCccCcc
Confidence 444444444 44444433111221
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
. ...|.. +...|.+.|++++|.+.|++..... +.+...|..+...|.
T Consensus 140 ~-------------------------------~~~~~~-la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 140 R-------------------------------SRVFEN-LGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp H-------------------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred c-------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 1 112233 6677888899999999999887753 235788888999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELE 461 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~ 461 (687)
+.|++++|..+++...+.. ..+...+..+...+.+.|+.++|.++++.+.+. .|+...+.
T Consensus 187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~ 246 (252)
T 2ho1_A 187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQ 246 (252)
T ss_dssp HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHH
Confidence 9999999999999887642 245567788888888999999999999988775 35444433
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=6.4e-06 Score=83.09 Aligned_cols=226 Identities=12% Similarity=-0.009 Sum_probs=170.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccc
Q 005628 191 QFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 191 ~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~ 270 (687)
..++..+-..+.+.|++++|+..|++..+.+ +...+..|-..|.... ...++.++|...|. +..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~------~~~~~~~~A~~~~~-------~a~ 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ------GVEKNLKKAASFYA-------KAC 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS------SSCCCHHHHHHHHH-------HHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC------CcCCCHHHHHHHHH-------HHH
Confidence 3567777788889999999999999998833 4566666766676200 02788999999985 322
Q ss_pred ccCCCCCccchhcccccccccccccc----CCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~----~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g 346 (687)
+. + +...|..|-.. +.. .+++++|...|++..+.+ +..
T Consensus 70 ~~-~--~~~a~~~lg~~------~~~g~~~~~~~~~A~~~~~~a~~~~---~~~-------------------------- 111 (273)
T 1ouv_A 70 DL-N--YSNGCHLLGNL------YYSGQGVSQNTNKALQYYSKACDLK---YAE-------------------------- 111 (273)
T ss_dssp HT-T--CHHHHHHHHHH------HHHTSSSCCCHHHHHHHHHHHHHTT---CHH--------------------------
T ss_pred HC-C--CHHHHHHHHHH------HhCCCCcccCHHHHHHHHHHHHHcC---Ccc--------------------------
Confidence 22 2 33344444444 555 889999999998877654 222
Q ss_pred CCCChhhhHHHHHHHHHh----hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCC
Q 005628 347 WSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~ 418 (687)
.+.. +-..|.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|...|+...+.+
T Consensus 112 ------a~~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~- 180 (273)
T 1ouv_A 112 ------GCAS-LGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 180 (273)
T ss_dssp ------HHHH-HHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred ------HHHH-HHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 2223 4455666 889999999999998876 66778888888888 899999999999888774
Q ss_pred CCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 419 NPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
+...+..+-..|.. .++.++|.+.|+...+.+ +...+..|-..|.+ .++.++|...|++-.+.
T Consensus 181 --~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 181 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHc
Confidence 45677778888888 899999999999988875 36677778888888 89999999999988877
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.6e-07 Score=92.48 Aligned_cols=202 Identities=12% Similarity=0.031 Sum_probs=144.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccc
Q 005628 190 EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 190 ~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em 269 (687)
....|..+-..+.+.|++++|+.+|+++.... +.+...+..+...|. ..|+.++|...|. +.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~----------~~~~~~~A~~~~~-------~~ 83 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLS----------SVNELERALAFYD-------KA 83 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH----------HcCCHHHHHHHHH-------HH
Confidence 34678888888999999999999999998642 346778888888888 7899999999995 33
Q ss_pred cccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCC
Q 005628 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (687)
Q Consensus 270 ~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p 349 (687)
... .-.+...|..+... +...|++++|...|++..+.. |+
T Consensus 84 ~~~-~~~~~~~~~~la~~------~~~~~~~~~A~~~~~~~~~~~--~~------------------------------- 123 (243)
T 2q7f_A 84 LEL-DSSAATAYYGAGNV------YVVKEMYKEAKDMFEKALRAG--ME------------------------------- 123 (243)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHT--CC-------------------------------
T ss_pred HHc-CCcchHHHHHHHHH------HHHhccHHHHHHHHHHHHHhC--CC-------------------------------
Confidence 332 22245567777777 889999999999999887753 21
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
+...+.. +...|.+.|++++|.+.|+++.... +.+...+..+...+.+.|++++|...|++..... ..+..+|..+.
T Consensus 124 ~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 200 (243)
T 2q7f_A 124 NGDLFYM-LGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAG 200 (243)
T ss_dssp SHHHHHH-HHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CHHHHHH-HHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 1223334 6788899999999999999988753 3467889999999999999999999999988763 23567899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCC
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
..|.+.|+.++|.+.++.+.+..
T Consensus 201 ~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 201 VTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHccCHHHHHHHHHHHHccC
Confidence 99999999999999999998753
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-06 Score=84.61 Aligned_cols=200 Identities=12% Similarity=-0.027 Sum_probs=135.4
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccc
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~e 268 (687)
++...|..+-..+.+.|++++|+..|++..+.. +-+...|..+-..+. ..|+.++|...|
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~----------~~g~~~~A~~~~--------- 62 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQL----------KLGLVNPALENG--------- 62 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH----------HTTCHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCCHHHHHHHH---------
Confidence 344678888888999999999999999987532 224455555555555 445555555554
Q ss_pred ccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCC
Q 005628 269 LGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (687)
Q Consensus 269 m~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (687)
++..+. .|+..
T Consensus 63 ---------------------------------------~~al~~--~P~~~---------------------------- 73 (217)
T 2pl2_A 63 ---------------------------------------KTLVAR--TPRYL---------------------------- 73 (217)
T ss_dssp ---------------------------------------HHHHHH--CTTCH----------------------------
T ss_pred ---------------------------------------HHHHHh--CCCcH----------------------------
Confidence 443332 13221
Q ss_pred CChhhhHHHHHHHHHhh-----------ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 005628 349 IDNQDADEIRLSEDAKK-----------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG 417 (687)
Q Consensus 349 pd~~tyn~~lI~~~~k~-----------g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g 417 (687)
..|.. +-..|.+. |++++|...|++..+.. +-+...|..+-..|...|++++|...|++..+..
T Consensus 74 ---~a~~~-lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 148 (217)
T 2pl2_A 74 ---GGYMV-LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE 148 (217)
T ss_dssp ---HHHHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHH-HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc
Confidence 11222 44445555 99999999999988753 2357788999999999999999999999998877
Q ss_pred CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 418 INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.+...+..+-..|...|+.++|...|+...+.. +-+...+..+...+.+.|++++|...|++...
T Consensus 149 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 149 --DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp --CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred --cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 688889999999999999999999999998753 23677888899999999999999999887654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.61 E-value=7.3e-06 Score=84.80 Aligned_cols=243 Identities=10% Similarity=0.010 Sum_probs=172.7
Q ss_pred HHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCch-------hhhh
Q 005628 192 FQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-------MRTL 256 (687)
Q Consensus 192 ~tyn~lI~~~~k~----g~~----~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~-------~~A~ 256 (687)
..|...|+-.-+. ++. ++|+.+|++.... .+-+...|..+...+...+. ...+.|++ ++|.
T Consensus 9 ~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~---~l~~~g~~~~~~~~~~~A~ 84 (308)
T 2ond_A 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAA 84 (308)
T ss_dssp HHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH---HHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhch---hhhhccchhhcccchHHHH
Confidence 4555555554443 233 7889999999864 24466777777776652100 00013554 8899
Q ss_pred hhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccC
Q 005628 257 DTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLER 336 (687)
Q Consensus 257 ~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~ 336 (687)
.+|. +-.....-.+...|..+... +.+.|++++|..+|++..+. .|+...
T Consensus 85 ~~~~-------rAl~~~~p~~~~~~~~~~~~------~~~~~~~~~A~~~~~~al~~--~p~~~~--------------- 134 (308)
T 2ond_A 85 NIYE-------RAISTLLKKNMLLYFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT--------------- 134 (308)
T ss_dssp HHHH-------HHHTTTTTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHTS--SSSCTH---------------
T ss_pred HHHH-------HHHHHhCcccHHHHHHHHHH------HHhcCCHHHHHHHHHHHHhc--cccCcc---------------
Confidence 9985 32221011144468888888 88999999999999988763 343221
Q ss_pred CCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHH
Q 005628 337 GPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM-SMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 337 ~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~-~~g~~~~A~~l~~~M~~ 415 (687)
..|.. +...+.+.|++++|..+|++..+... ++...|........ ..|+.++|..+|+...+
T Consensus 135 ---------------~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~ 197 (308)
T 2ond_A 135 ---------------LVYIQ-YMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLK 197 (308)
T ss_dssp ---------------HHHHH-HHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred ---------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 13445 67778899999999999999987642 34455554433322 36999999999999876
Q ss_pred cCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 416 LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 416 ~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v~p--d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. .-+...|..++..+.+.|+.++|..+|+...+.. +.| ....|..++..+.+.|+.++|..+++++...
T Consensus 198 ~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 198 KY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 52 2256788889999999999999999999999874 455 4778999999999999999999999999887
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.1e-06 Score=82.89 Aligned_cols=165 Identities=9% Similarity=-0.007 Sum_probs=135.3
Q ss_pred chhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHH
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
.|..+... +...|++++|...|++..+.. |+. ...|.. +.
T Consensus 10 ~~~~~~~~------~~~~~~~~~A~~~~~~~~~~~--~~~-------------------------------~~~~~~-l~ 49 (225)
T 2vq2_A 10 IKTQLAME------YMRGQDYRQATASIEDALKSD--PKN-------------------------------ELAWLV-RA 49 (225)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHHC--TTC-------------------------------HHHHHH-HH
T ss_pred HHHHHHHH------HHHHhhHHHHHHHHHHHHHhC--ccc-------------------------------hHHHHH-HH
Confidence 35555555 888999999999999887652 221 223334 77
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCC
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM-GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~ 437 (687)
..|...|++++|.+.|++..... +.+..+|..+...+... |++++|..+++.+...+..|+ ...|..+...+...|+
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 88899999999999999998753 34678999999999999 999999999999988433333 5778889999999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+++.+.. ..+...+..+...|.+.|++++|..++++....
T Consensus 129 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999998753 235888999999999999999999999998876
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.2e-06 Score=83.82 Aligned_cols=156 Identities=9% Similarity=-0.107 Sum_probs=114.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+.. |+ +...|.. +-..|...|++++|.+
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~--~~-------------------------------~~~~~~~-l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD--TT-------------------------------RLDMYGQ-IGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TT-------------------------------CTHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC--cc-------------------------------cHHHHHH-HHHHHHHccCHHHHHH
Confidence 667777788887777766532 22 1123344 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCC---hHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD---VDKACSVEEHML 449 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~---~~~A~~l~~~M~ 449 (687)
.|++..+. -+.+...|..+-..+...+++++|...|++..+. .|+ ...|..+-..+...|+ .++|...+++..
T Consensus 130 ~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 130 YMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 99998876 2345667777763444556999999999998875 244 5667777777888888 888888888876
Q ss_pred HCC-CCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 450 EHG-VYPE------EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 450 ~~g-v~pd------~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.. -.|+ ...|..|-..|.+.|++++|...|++....
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 542 1233 257888888999999999999999999887
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.53 E-value=3.6e-06 Score=73.60 Aligned_cols=129 Identities=16% Similarity=0.120 Sum_probs=111.0
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
|.. +...|...|++++|.++|+++.... +.+...|..+...+...|++++|..+|+++...+ ..+...|..+...+.
T Consensus 4 ~~~-l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYN-LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 444 6788889999999999999998754 3467889999999999999999999999988764 245677888999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|+.++|.++++++.+.. ..+...+..+...|.+.|++++|...|+++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998764 346788899999999999999999999998765
|
| >3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A | Back alignment and structure |
|---|
Probab=98.52 E-value=3.9e-08 Score=92.77 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=64.5
Q ss_pred ccEEEeccchhcccCC--CCChhHHHHHHHHHHhhCCCCCc-cEEEecccccCC-CCCCChHHHHHHHHHHhCCceeeCC
Q 005628 605 FEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYATP 680 (687)
Q Consensus 605 yd~vIDGanvg~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lvvL~~~~~~~-~~~~~~~~~~l~~~w~~~~~ly~tp 680 (687)
--+||||+|||++.++ .|+..+|..+|++|.++ |+. .+|+++..+.+. .+......++++++|.+.|.|+.||
T Consensus 25 R~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yf~~r---Gh~~v~VfvP~~r~~~~~~~~~~~d~~~L~~L~~~g~l~~TP 101 (185)
T 3v32_B 25 RPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLER---GHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTP 101 (185)
T ss_dssp CCEEEEHHHHHHHHTTTTSEEHHHHHHHHHHHHHT---TCCCEEEEEEGGGGSCCCTTSCEECTHHHHHHHHTTCEEEEC
T ss_pred CeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHc---CCCceEEEechHhhhcccccCCCCCHHHHHHHHHCCCEEECC
Confidence 4699999999998776 67899999999999983 655 456777777653 2222345678999999999999999
Q ss_pred CC--------CCCCC
Q 005628 681 TG--------SNDDW 687 (687)
Q Consensus 681 ~~--------~nDDw 687 (687)
.+ ++|||
T Consensus 102 s~~~~g~~~~~ydD~ 116 (185)
T 3v32_B 102 SRRVGGKRVVCYDDR 116 (185)
T ss_dssp CCC-------CCHHH
T ss_pred CcccCCCcccCccHH
Confidence 99 89996
|
| >3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.5e-08 Score=93.88 Aligned_cols=80 Identities=16% Similarity=0.165 Sum_probs=64.0
Q ss_pred ccEEEeccchhcccCC--CCChhHHHHHHHHHHhhCCCCCc-cEEEecccccCC-CCCCChHHHHHHHHHHhCCceeeCC
Q 005628 605 FEAVVDAANVGLYSQR--NFKPARVNAVVNGIRQKFPSKKW-PLIVLHNRRITG-HKMDQPVNRALIEKWKNADALYATP 680 (687)
Q Consensus 605 yd~vIDGanvg~~~~~--~~~~~~l~~vv~~l~~~~~~~~~-~lvvL~~~~~~~-~~~~~~~~~~l~~~w~~~~~ly~tp 680 (687)
=-|||||+|||++.++ .|+...|..+|++|.++ |+. .+|+++..+.+. ........++++++|.++|.|+.||
T Consensus 25 R~IVIDGsNVA~~~g~~~~Fs~rgI~~aV~yF~~R---Gh~~V~VfvP~~r~~~~~~~~~~~d~~~L~~L~k~g~L~~TP 101 (223)
T 3v33_A 25 RPVVIDGSNVAMSHGNKEVFSCRGILLAVNWFLER---GHTDITVFVPSWRKEQPRPDVPITDQHILRELEKKKILVFTP 101 (223)
T ss_dssp CCEEEEHHHHHHHSSSTTSEEHHHHHHHHHHHHTT---TCCCEEEEEEGGGGSCCCTTSCEESTHHHHHHHHTTCEEEEC
T ss_pred CeEEEeCHHHHhhhCCCCCcCHHHHHHHHHHHHHc---CCCceEEEechhhhccccccCCCCcHHHHHHHHHCCCEEECC
Confidence 3699999999998776 67889999999999983 666 457778777653 1222345578999999999999999
Q ss_pred CC--------CCCCC
Q 005628 681 TG--------SNDDW 687 (687)
Q Consensus 681 ~~--------~nDDw 687 (687)
.+ ++|||
T Consensus 102 s~~v~G~r~~sydD~ 116 (223)
T 3v33_A 102 SRRVGGKRVVCYDDR 116 (223)
T ss_dssp EEEETTEEEECCHHH
T ss_pred CCCcCCccccccchH
Confidence 99 88996
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.45 E-value=2.5e-06 Score=79.34 Aligned_cols=156 Identities=16% Similarity=0.065 Sum_probs=125.7
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|+++.+.. |+ +...+.. +...|...|++++|.+
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 63 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDAD--AF-------------------------------DVDVALH-LGIAYVKTGAVDRGTE 63 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTT--SC-------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC--cc-------------------------------ChHHHHH-HHHHHHHcCCHHHHHH
Confidence 777889999998887664431 21 2233444 7778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (687)
.|+++.+.. +.+...|..+...+...|++++|.+.++++.... ..+...+..+...+...|+.++|.+.+++..+..
T Consensus 64 ~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~- 140 (186)
T 3as5_A 64 LLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR- 140 (186)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-
Confidence 999988753 3467889999999999999999999999988762 3466788888889999999999999999988764
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+...|..+...|...|++++|...+++....
T Consensus 141 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 141 PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 346788999999999999999999999988765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.7e-06 Score=88.67 Aligned_cols=274 Identities=11% Similarity=-0.035 Sum_probs=188.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (687)
.....++.++|...|+...+.. |+ .|. ...|..+-..+...|++++|++.|++.... +-.|. ..++..
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 88 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cc---cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence 5567899999999999987642 11 111 367888999999999999999999987632 22222 456666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCC----------
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~---------- 299 (687)
+-..+. ..|++++|...+.-. .++....+-. ...+|..+-.. +...|+
T Consensus 89 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~ 148 (338)
T 3ro2_A 89 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDT 148 (338)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHHHTSSSSSCC--
T ss_pred HHHHHH----------HccCHHHHHHHHHHH----HHHHHHhcCchHHHHHHHHHHHH------HHHcCcccccchhhhh
Confidence 667777 789999999988511 1111110111 12245666666 777777
Q ss_pred ----------hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccH
Q 005628 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (687)
Q Consensus 300 ----------~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (687)
+++|...+++....--. .+-.|. ...+.. +-..|...|++
T Consensus 149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~-l~~~~~~~~~~ 199 (338)
T 3ro2_A 149 GEFPEDVRNALQAAVDLYEENLSLVTA----------------------------LGDRAAQGRAFGN-LGNTHYLLGNF 199 (338)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHH-HHHHHHHHTCH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh----------------------------cCCHHHHHHHHHH-HHHHHHHhCCH
Confidence 88888887765432000 000011 123444 66788899999
Q ss_pred HHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhCCCh
Q 005628 369 QRGFEIYEKMCLD----EVP-MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 369 ~~A~~lf~~M~~~----gi~-pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~ty~~lI~~~~~~g~~ 438 (687)
++|.+.|++..+. +.. ....++..+...+...|++++|...+++.... +-.+ ...++..+-..|...|+.
T Consensus 200 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 279 (338)
T 3ro2_A 200 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 279 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCH
Confidence 9999999987642 111 11347888999999999999999999987643 1111 146778888899999999
Q ss_pred HHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++|...+++..+. +-. ....+|..+-..|.+.|++++|...+++....
T Consensus 280 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9999999987653 111 12457788899999999999999999988765
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.39 E-value=1.8e-05 Score=88.50 Aligned_cols=127 Identities=9% Similarity=-0.051 Sum_probs=81.9
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
.+.++.+.|..+|+.+.+. .+-+...|...+..+.+.|++++|..+|+++... .|+...|..++.....
T Consensus 23 ~~~~~~~~a~~~~e~al~~-------~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~-- 91 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-------FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRE-- 91 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHH--
T ss_pred HHhCCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHH--
Confidence 4578999999999999542 2234578999999999999999999999999865 4788877777754332
Q ss_pred cCCcccCCCCchhhhhh----hhhhcccccccccccCCCC--Cccchhcccccc---ccccccccCCChhhHHHHHHHHH
Q 005628 241 VGVVKPAKSGSGMRTLD----TFEVSTMNSTELGDSRDMD--NNGQLDYGSSPM---IDKLESNSSYRFDDLDSTFNEKE 311 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~----lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~---~~~~~~~~~g~~~~A~~lf~eM~ 311 (687)
..|+.+.|.+ +|. ......|.. +...|...+.-. .....+...|+++.|..+|++..
T Consensus 92 -------~~~~~~~a~~~~~~~~~-------~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al 157 (530)
T 2ooe_A 92 -------TKGKLPSYKEKMAQAYD-------FALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC 157 (530)
T ss_dssp -------HTTTSTTHHHHHHHHHH-------HHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred -------HccchhhHHHHHHHHHH-------HHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence 2355555554 553 222211333 223355544430 00000223678889999998887
Q ss_pred h
Q 005628 312 N 312 (687)
Q Consensus 312 ~ 312 (687)
.
T Consensus 158 ~ 158 (530)
T 2ooe_A 158 V 158 (530)
T ss_dssp T
T ss_pred h
Confidence 7
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=93.21 Aligned_cols=274 Identities=10% Similarity=-0.035 Sum_probs=188.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKLG-QYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----Gi~pd-~~tyn~ 231 (687)
.....++.++|...|+...+.. |+ .|. ...|..+-..+...|++++|+..|++.... +-.|. ..+|..
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 92 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVG--TE---DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN 92 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--cc---cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 4557889999999999987652 11 121 357888889999999999999999987632 22222 345666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCC----------
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~---------- 299 (687)
+-..|. ..|++++|...+.-. .++....+-. -..+|..+-.. +...|+
T Consensus 93 la~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 152 (406)
T 3sf4_A 93 LGNTLK----------VLGNFDEAIVCCQRH----LDISRELNDKVGEARALYNLGNV------YHAKGKSFGCPGPQDV 152 (406)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHTCC-------
T ss_pred HHHHHH----------HcCCHHHHHHHHHHH----HHHHHhcccccchHHHHHHHHHH------HHHcCCcccccccchh
Confidence 666676 789999999888511 0111110100 12246666566 777888
Q ss_pred ----------hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccH
Q 005628 300 ----------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAF 368 (687)
Q Consensus 300 ----------~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~ 368 (687)
+++|...+.+....-- ..+-.|. ..+|.. +-..|...|++
T Consensus 153 ~~~~~~a~~~~~~A~~~~~~al~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~ 203 (406)
T 3sf4_A 153 GEFPEEVRDALQAAVDFYEENLSLVT----------------------------ALGDRAAQGRAFGN-LGNTHYLLGNF 203 (406)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHH----------------------------HTTCHHHHHHHHHH-HHHHHHHHTBH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHH----------------------------hccCcHHHHHHHHH-HHHHHHHccCH
Confidence 8888888876543200 0000011 123444 67888899999
Q ss_pred HHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhCCCh
Q 005628 369 QRGFEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDV 438 (687)
Q Consensus 369 ~~A~~lf~~M~~~gi-~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd-~~ty~~lI~~~~~~g~~ 438 (687)
++|.+.|++..+... .++ ..+|..+...|...|++++|...+++.... +-.+. ..+|..+-..|...|++
T Consensus 204 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 283 (406)
T 3sf4_A 204 RDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDY 283 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcH
Confidence 999999998864210 122 347888999999999999999999987643 11111 46788888999999999
Q ss_pred HHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEHGV-YPE----EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++|.+.+++..+..- ..+ ..+|..+-..|.+.|++++|...+++....
T Consensus 284 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 284 EKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999998765311 112 567888889999999999999999986643
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.34 E-value=2.3e-05 Score=84.03 Aligned_cols=231 Identities=8% Similarity=-0.029 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCc-hhhhhhhhhhccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGS-GMRTLDTFEVSTMNSTELG 270 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~-~~~A~~lf~~~~~~s~em~ 270 (687)
..|+.+-..+.+.|++++|++.|++..... +-+...|+.+-..+. ..|+ +++|+..|. +..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~----------~~g~d~~eAl~~~~-------~al 159 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AII 159 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHH----------HcccCHHHHHHHHH-------HHH
Confidence 567777788889999999999999998753 224667788878887 6786 999999995 333
Q ss_pred ccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 271 DSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 271 ~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
.. .-.+...|+.+-.. +...|++++|...|++..+.. |+ +
T Consensus 160 ~l-~P~~~~a~~~~g~~------~~~~g~~~eAl~~~~kal~ld--P~-------------------------------~ 199 (382)
T 2h6f_A 160 EE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AK-------------------------------N 199 (382)
T ss_dssp HH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TT-------------------------------C
T ss_pred HH-CCCCHHHHHHHHHH------HHHccCHHHHHHHHHHHHHhC--cc-------------------------------C
Confidence 32 22255567777777 888999999999999988752 32 2
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHHcCCCCC-cc
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS-MGDGDMA-----FDMVKRMKSLGINPR-LR 423 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~-~g~~~~A-----~~l~~~M~~~g~~Pd-~~ 423 (687)
...|.. +-..+.+.|++++|++.|+++.+... -+...|+.+-..+.+ .|..++| +..|+..... .|+ ..
T Consensus 200 ~~a~~~-lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l--~P~~~~ 275 (382)
T 2h6f_A 200 YHAWQH-RQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNES 275 (382)
T ss_dssp HHHHHH-HHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHH
T ss_pred HHHHHH-HHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH--CCCCHH
Confidence 234445 66778888999999999999998643 367899999999999 6666888 4777776654 354 46
Q ss_pred hHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------ChHHHHHHHHHH-Hhc
Q 005628 424 SYGPALSVFCNNG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAG---------KGDRVYYLLHKL-RTS 486 (687)
Q Consensus 424 ty~~lI~~~~~~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g---------~~~~A~~ll~~M-~~~ 486 (687)
.|+.+-..+.+.| +.++|.+.+.++ ..-..+...+..|...|.+.| ..++|..+|+++ .+.
T Consensus 276 a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 276 AWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh
Confidence 7888888888888 689999999888 333456788899999998874 358999999998 443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.3e-05 Score=78.47 Aligned_cols=174 Identities=14% Similarity=0.046 Sum_probs=135.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...|.. +-..+.+.|++++|..
T Consensus 15 ~~~~g~~~~A~~~~~~al~~--~p~~-------------------------------~~a~~~-lg~~~~~~g~~~~A~~ 60 (217)
T 2pl2_A 15 LYALGRYDAALTLFERALKE--NPQD-------------------------------PEALYW-LARTQLKLGLVNPALE 60 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHTT--SSSC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 77899999999999987764 2332 222333 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSM-----------GDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~-----------g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A 441 (687)
.|++..+.. +-+...|..+-..+.+. |++++|...|+...+. .|+ ...|..+-..|...|+.++|
T Consensus 61 ~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A 137 (217)
T 2pl2_A 61 NGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKA 137 (217)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHH
Confidence 999998754 33677899999999999 9999999999998875 354 56778888899999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCCh-hHHHH-HHHHHcCHHHH
Q 005628 442 CSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSP-STADV-IAKWFNSKEAA 508 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p-~t~~~-I~~~~~~~~~~ 508 (687)
...|++..+.. .+...+..+-..|...|++++|...|++.... .|.. ..+.. -..+...+...
T Consensus 138 ~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~ 202 (217)
T 2pl2_A 138 EASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAE 202 (217)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHH
Confidence 99999999887 78999999999999999999999999999887 3332 23333 34444555443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-05 Score=94.50 Aligned_cols=249 Identities=11% Similarity=0.106 Sum_probs=176.9
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.+...+..++|..+|+.-. .++ ...+.++. ..|++++|.++.++.. +..+|..+=.++.
T Consensus 1058 Iai~lglyEEAf~IYkKa~----------~~~-~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql- 1116 (1630)
T 1xi4_A 1058 IAISNELFEEAFAIFRKFD----------VNT-SAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL- 1116 (1630)
T ss_pred HHHhCCCHHHHHHHHHHcC----------CHH-HHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH-
Confidence 4457788899999998861 111 34455554 5678999999988652 4678888888888
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
..|++++|.+.|. .-.|.-.|.-++.. +.+.|++++|.+.|..-.+.. ++
T Consensus 1117 ---------~~G~~kEAIdsYi-------------KAdD~say~eVa~~------~~~lGkyEEAIeyL~mArk~~--~e 1166 (1630)
T 1xi4_A 1117 ---------QKGMVKEAIDSYI-------------KADDPSSYMEVVQA------ANTSGNWEELVKYLQMARKKA--RE 1166 (1630)
T ss_pred ---------hCCCHHHHHHHHH-------------hcCChHHHHHHHHH------HHHcCCHHHHHHHHHHHHhhc--cc
Confidence 8899999999995 22344557778888 999999999999998655433 44
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAM 398 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~ 398 (687)
....+ .+..+|++..+ +.++..-=-.|+...|.. +=+.|...|++++|..+|... ..|..+...|+
T Consensus 1167 ~~Idt--~LafaYAKl~r--leele~fI~~~n~ad~~~-iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLv 1232 (1630)
T 1xi4_A 1167 SYVET--ELIFALAKTNR--LAELEEFINGPNNAHIQQ-VGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLV 1232 (1630)
T ss_pred ccccH--HHHHHHHhhcC--HHHHHHHHhCCCHHHHHH-HHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHH
Confidence 43333 35555553311 111111111345555665 667888889999999999884 47999999999
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYY 478 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ 478 (687)
+.|++++|.+.+++- -+..+|.-+-.+|...|+++.|...... +..+...+..++..|-+.|.+++|+.
T Consensus 1233 kLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~ 1301 (1630)
T 1xi4_A 1233 HLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELIT 1301 (1630)
T ss_pred HhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999998754 2557787777788888888887776553 34466677788888888888888888
Q ss_pred HHHHH
Q 005628 479 LLHKL 483 (687)
Q Consensus 479 ll~~M 483 (687)
+++.-
T Consensus 1302 LlE~a 1306 (1630)
T 1xi4_A 1302 MLEAA 1306 (1630)
T ss_pred HHHHH
Confidence 88544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.2e-06 Score=93.66 Aligned_cols=274 Identities=11% Similarity=-0.054 Sum_probs=189.5
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCc--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSE--QFQLRVELDMCSKRGDVMGAIRLYDKAQRE----GIKL-GQYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~--~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~----Gi~p-d~~tyn~ 231 (687)
.....++.++|.+.|+...+.. ++ .|. ...|..+-..|...|++++|+..|++.... +-.| ...++..
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TE---DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CS---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--cc---ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 4557789999999999987642 11 111 147888889999999999999999998743 2122 3355666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCC----------
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYR---------- 299 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~---------- 299 (687)
+-..|. ..|++++|...+.-. .++....+-. ....|+.+-.. +...|+
T Consensus 132 l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~~~~~~~~ 191 (411)
T 4a1s_A 132 LGNTLK----------VMGRFDEAAICCERH----LTLARQLGDRLSEGRALYNLGNV------YHAKGKHLGQRNPGKF 191 (411)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHHTCHHHHHHHHHHHHHH------HHHHHHHHHHHSTTCC
T ss_pred HHHHHH----------HCCCHHHHHHHHHHH----HHHHHHhhchHHHHHHHHHHHHH------HHHcCcccccccchhh
Confidence 666676 789999999988511 1111110111 22346666666 788888
Q ss_pred -------hhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHH
Q 005628 300 -------FDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRG 371 (687)
Q Consensus 300 -------~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A 371 (687)
+++|...+.+..+..-. .+-.+ ....|.. +-..|...|++++|
T Consensus 192 ~~~a~~~~~~A~~~~~~al~~~~~----------------------------~~~~~~~~~~~~~-la~~~~~~g~~~~A 242 (411)
T 4a1s_A 192 GDDVKEALTRAVEFYQENLKLMRD----------------------------LGDRGAQGRACGN-LGNTYYLLGDFQAA 242 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----------------------------HTCHHHHHHHHHH-HHHHHHHTTCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH----------------------------cCCHHHHHHHHHH-HHHHHHHcCChHHH
Confidence 88888888765432100 00001 1123444 66788999999999
Q ss_pred HHHHHHHHhCCC-CCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--C--C-CCcchHHHHHHHHHhCCChHHH
Q 005628 372 FEIYEKMCLDEV-PMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--I--N-PRLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 372 ~~lf~~M~~~gi-~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g--~--~-Pd~~ty~~lI~~~~~~g~~~~A 441 (687)
.+.|++..+... .++ ..+|..+...|...|++++|...|++..... . . ....+|..+-..|...|+.++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (411)
T 4a1s_A 243 IEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTA 322 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999998865311 112 2378889999999999999999999876531 1 0 1246788888999999999999
Q ss_pred HHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEH----GV-YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~----gv-~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.+++..+. +- .....+|..+-..|.+.|+.++|..+|++....
T Consensus 323 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 323 IEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999987653 11 112457888889999999999999999988776
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-05 Score=82.55 Aligned_cols=219 Identities=11% Similarity=-0.030 Sum_probs=160.9
Q ss_pred CchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHHHHHH
Q 005628 167 SGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCS-------KRGDV-------MGAIRLYDKAQREGIKL-GQYHYNV 231 (687)
Q Consensus 167 ~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~-------k~g~~-------~~A~~lf~~M~~~Gi~p-d~~tyn~ 231 (687)
..|..+|+...... +-+...|..+...+. +.|++ ++|..+|++.... +.| +...|..
T Consensus 33 ~~a~~~~~~al~~~-------p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~ 104 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 104 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHc-------CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHH
Confidence 35777888875431 123357777776665 45885 9999999999863 345 4568889
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc-chhccccccccccccccCCChhhHHHHHHHH
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG-QLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~-tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
+...+. +.|++++|..+|. +.... .-.+.. .|..+... +.+.|++++|..+|++.
T Consensus 105 ~~~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~~~~~~~~~~------~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 105 YADYEE----------SRMKYEKVHSIYN-------RLLAI-EDIDPTLVYIQYMKF------ARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHH----------HTTCHHHHHHHHH-------HHHTS-SSSCTHHHHHHHHHH------HHHHHCHHHHHHHHHHH
T ss_pred HHHHHH----------hcCCHHHHHHHHH-------HHHhc-cccCccHHHHHHHHH------HHHhcCHHHHHHHHHHH
Confidence 999888 7899999999995 33332 111332 68888888 88899999999999988
Q ss_pred HhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHH
Q 005628 311 ENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASL 390 (687)
Q Consensus 311 ~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~ty 390 (687)
.+.. |+. +. .|.....-.+...|+.++|.++|++..+.. +-+...|
T Consensus 161 ~~~~--p~~--~~-----------------------------~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 206 (308)
T 2ond_A 161 REDA--RTR--HH-----------------------------VYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYV 206 (308)
T ss_dssp HTST--TCC--TH-----------------------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred HhcC--CCC--HH-----------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHH
Confidence 7643 322 11 111101111223699999999999987753 2367899
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
..++..+.+.|++++|..+|+...... +.|+ ...|..++..+.+.|+.+.|..+++.+.+.
T Consensus 207 ~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 207 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999863 5664 467888999999999999999999998775
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=4.4e-05 Score=76.85 Aligned_cols=217 Identities=12% Similarity=-0.006 Sum_probs=164.4
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYL 235 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~ 235 (687)
....++.++|.+.|+...+.+ +...+..+-..|.. .+++++|+..|++..+.+ +...+..|-..
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 83 (273)
T 1ouv_A 16 SYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNL 83 (273)
T ss_dssp HHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 345678999999999986521 22677778888888 999999999999999887 67788888777
Q ss_pred HHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhcccccccccccccc----CCChhhHHHHHHHHH
Q 005628 236 CSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS----SYRFDDLDSTFNEKE 311 (687)
Q Consensus 236 ~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~----~g~~~~A~~lf~eM~ 311 (687)
|.... ...++.++|...|. +.... + +...+..|-.. +.. .+++++|...|++-.
T Consensus 84 ~~~g~------~~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~------~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 84 YYSGQ------GVSQNTNKALQYYS-------KACDL-K--YAEGCASLGGI------YHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHTS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH------HHHCSSSCCCHHHHHHHHHHHH
T ss_pred HhCCC------CcccCHHHHHHHHH-------HHHHc-C--CccHHHHHHHH------HHcCCCcccCHHHHHHHHHHHH
Confidence 77210 02789999999995 33222 2 33345444444 555 899999999999887
Q ss_pred hcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh----hccHHHHHHHHHHHHhCCCCCCH
Q 005628 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNE 387 (687)
Q Consensus 312 ~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~ 387 (687)
+.+ +...+ .. +-..|.. .+++++|.+.|++..+.+ +.
T Consensus 142 ~~~---~~~a~--------------------------------~~-lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~ 182 (273)
T 1ouv_A 142 DLN---DGDGC--------------------------------TI-LGSLYDAGRGTPKDLKKALASYDKACDLK---DS 182 (273)
T ss_dssp HTT---CHHHH--------------------------------HH-HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred hcC---cHHHH--------------------------------HH-HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 765 11111 12 4444555 889999999999998875 56
Q ss_pred HHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 005628 388 ASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 388 ~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~g 452 (687)
..+..+-..|.. .+++++|+..|+...+.+ +...+..|-..|.+ .++.++|.+.|+...+.|
T Consensus 183 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 183 PGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 788889999999 999999999999988875 25667777788888 899999999999987765
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.27 E-value=5.3e-06 Score=82.88 Aligned_cols=234 Identities=8% Similarity=-0.056 Sum_probs=134.7
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc--
Q 005628 202 SKRGDVMGAIRLYDKAQRE-------GIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-- 272 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~-------Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~-- 272 (687)
...|++++|+.+|++..+. .-+....++..+-..|. ..|++++|...+. +....
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~-------~al~~~~ 74 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYR----------DQNKYKEAAHLLN-------DALAIRE 74 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH----------HcccHHHHHHHHH-------HHHHHHH
Confidence 3456666666666665531 11223556677777777 7788888888884 22211
Q ss_pred ----CCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCC
Q 005628 273 ----RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (687)
Q Consensus 273 ----~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~ 347 (687)
..-+ ...+|+.+-.. +...|++++|...|.+.....- .... .-
T Consensus 75 ~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~-------------------------~~~~-~~ 122 (283)
T 3edt_B 75 KTLGKDHPAVAATLNNLAVL------YGKRGKYKEAEPLCKRALEIRE-------------------------KVLG-KF 122 (283)
T ss_dssp HHTCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHHHHHHHHHHH-------------------------HHHC-TT
T ss_pred HHcCCcchHHHHHHHHHHHH------HHHhccHHHHHHHHHHHHHHHH-------------------------HHcC-CC
Confidence 0111 33346666666 7888888888888877654210 0000 00
Q ss_pred CC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 005628 348 SI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD------EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL--- 416 (687)
Q Consensus 348 ~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~------gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--- 416 (687)
.| ....|.. +-..|...|++++|.+.|++.... +-.| ...++..+...|.+.|++++|..+|++....
T Consensus 123 ~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 123 HPDVAKQLNN-LALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp CHHHHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 11 2334555 667788888888888888877653 1122 3456777888888888888888888877643
Q ss_pred ----CCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH---C-C--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 417 ----GINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE---H-G--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 417 ----g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~---~-g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
...+....+-..+..+...+........+..+.. . + ......+|..|-..|.+.|++++|..+|++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334444443333333333222222222222111 0 1 112345788889999999999999999988764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.25 E-value=8.2e-06 Score=83.42 Aligned_cols=245 Identities=11% Similarity=0.044 Sum_probs=169.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~ 267 (687)
..+...-..+.+.|++++|+.+|+++....- .+ ...|..+-..|. ..|+.++|...+.-. .
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l 70 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD----L 70 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----H
Confidence 3445556778899999999999999998632 23 356777777777 789999999988511 1
Q ss_pred cccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCC-CCCccccchhhHhhccccccCCCcchhcc
Q 005628 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRK 344 (687)
Q Consensus 268 em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~-~Pd~~ty~~~~li~g~~~~a~~~~~~m~~ 344 (687)
++....+-. ....|..+-.. +...|++++|...|.+..+..- .++...
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~----------------------- 121 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG----------------------- 121 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------------------
T ss_pred HHhhcccccHHHHHHHHHHHHH------HHHccCHHHHHHHHHHHHHHHHHhcCchH-----------------------
Confidence 111110111 23346666666 8899999999999988654310 011000
Q ss_pred cCCCCChhhhHHHHHHHHHhhcc--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHH
Q 005628 345 KDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMS 399 (687)
Q Consensus 345 ~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~ 399 (687)
...++.. +-..|...|+ +++|.+.|++.... +-.| ...++..+...+..
T Consensus 122 -----~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 195 (338)
T 3ro2_A 122 -----EARALYN-LGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYL 195 (338)
T ss_dssp -----HHHHHHH-HHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHH-HHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 0123334 6677788888 89999988876532 1111 24578888889999
Q ss_pred cCChHHHHHHHHHHHHc----CCC-CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh
Q 005628 400 MGDGDMAFDMVKRMKSL----GIN-PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV-YPE----EPELEALLRVSVE 469 (687)
Q Consensus 400 ~g~~~~A~~l~~~M~~~----g~~-Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv-~pd----~~ty~~Li~~~~~ 469 (687)
.|++++|...+++.... +-. ....+|..+...+...|+.++|.+.+++..+..- ..+ ..++..+-..|..
T Consensus 196 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 275 (338)
T 3ro2_A 196 LGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Confidence 99999999999987643 111 1124788888999999999999999998764311 112 5677888899999
Q ss_pred cCChHHHHHHHHHHHhc
Q 005628 470 AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 470 ~g~~~~A~~ll~~M~~~ 486 (687)
.|++++|...+++....
T Consensus 276 ~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 276 LQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHH
Confidence 99999999999987654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.25 E-value=9.5e-06 Score=86.65 Aligned_cols=245 Identities=12% Similarity=0.026 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQ----YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNST 267 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~----~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~ 267 (687)
..+..+-..+.+.|++++|+.+|+++.+..- .+. ..|..+-..|. ..|++++|...|.-. .
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~----------~~g~~~~A~~~~~~a----l 113 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYF----------YLGDYNKAMQYHKHD----L 113 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----H
Confidence 4555566788999999999999999998632 233 46677777777 778999999988511 1
Q ss_pred cccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc
Q 005628 268 ELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (687)
Q Consensus 268 em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (687)
++....+-. ....|..+-.. +...|++++|...|++..+..-..
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~------~~~~g~~~~A~~~~~~al~~~~~~---------------------------- 159 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNT------LKVMGRFDEAAICCERHLTLARQL---------------------------- 159 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHH----------------------------
T ss_pred HHHHHccCchHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHHh----------------------------
Confidence 111111111 23346667667 889999999999998876531000
Q ss_pred CCCC-ChhhhHHHHHHHHHhhcc-----------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCC
Q 005628 346 DWSI-DNQDADEIRLSEDAKKYA-----------------FQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGD 402 (687)
Q Consensus 346 g~~p-d~~tyn~~lI~~~~k~g~-----------------~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~g~ 402 (687)
+-.| ...+|+. +-..|...|+ +++|.+.|++.... +-.+ ...+|..+-..|...|+
T Consensus 160 ~~~~~~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 238 (411)
T 4a1s_A 160 GDRLSEGRALYN-LGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGD 238 (411)
T ss_dssp TCHHHHHHHHHH-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hchHHHHHHHHH-HHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 0000 1223444 6678888899 99999998876531 1111 23578888899999999
Q ss_pred hHHHHHHHHHHHHcCC-CCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHhcCC
Q 005628 403 GDMAFDMVKRMKSLGI-NPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGV----Y-PEEPELEALLRVSVEAGK 472 (687)
Q Consensus 403 ~~~A~~l~~~M~~~g~-~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv----~-pd~~ty~~Li~~~~~~g~ 472 (687)
+++|...+++.....- .++ ..+|..+-..|...|+.++|.+.+++..+..- . ....+|..+-..|...|+
T Consensus 239 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 318 (411)
T 4a1s_A 239 FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE 318 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Confidence 9999999998765310 011 23788899999999999999999998765311 1 125678888999999999
Q ss_pred hHHHHHHHHHHHhc
Q 005628 473 GDRVYYLLHKLRTS 486 (687)
Q Consensus 473 ~~~A~~ll~~M~~~ 486 (687)
+++|..+|++....
T Consensus 319 ~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 319 FNTAIEYHNRHLAI 332 (411)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999987654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.3e-05 Score=81.54 Aligned_cols=241 Identities=11% Similarity=0.000 Sum_probs=152.8
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCC-CCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKS-KKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYN 230 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~-~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn 230 (687)
.....++.++|.++|+...+...... .........|..+-..|...|++++|+.+|++.... +-.| ...+|.
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 115 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLN 115 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 45577899999999999865210000 001223467888999999999999999999998854 2223 356777
Q ss_pred HHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc------CCCC-CccchhccccccccccccccCCChhhH
Q 005628 231 VLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS------RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDL 303 (687)
Q Consensus 231 ~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~------~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A 303 (687)
.+-..|. ..|+.++|...|. +.... ..-+ ....|..+-.. +...|++++|
T Consensus 116 ~l~~~~~----------~~g~~~~A~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~A 172 (311)
T 3nf1_A 116 NLAVLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKDHPDVAKQLNNLALL------CQNQGKYEEV 172 (311)
T ss_dssp HHHHHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHH
T ss_pred HHHHHHH----------HcCcHHHHHHHHH-------HHHHHHHHhcCCCChHHHHHHHHHHHH------HHHcCCHHHH
Confidence 7878888 8899999999995 22221 0111 33447777777 8999999999
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhC-
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD- 381 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~- 381 (687)
..+|++....-.. .. .+-.|+ ..++.. +...|.+.|++++|.+.|+++...
T Consensus 173 ~~~~~~a~~~~~~-------------------------~~-~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 173 EYYYQRALEIYQT-------------------------KL-GPDDPNVAKTKNN-LASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHHHHHHHHHHH-------------------------TS-CTTCHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------Hh-CCCCHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999987653100 00 001122 235665 788999999999999999998852
Q ss_pred ------CCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 382 ------EVPMN-------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 382 ------gi~pd-------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
...+. ...+..+...+...+.+.+|...+...... -..+..+|..+...|.+.|+.++|.+.|++.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 11111 222333334444556666666667665543 2235577889999999999999999999987
Q ss_pred HH
Q 005628 449 LE 450 (687)
Q Consensus 449 ~~ 450 (687)
.+
T Consensus 305 l~ 306 (311)
T 3nf1_A 305 MR 306 (311)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.2e-05 Score=85.10 Aligned_cols=248 Identities=11% Similarity=0.006 Sum_probs=172.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccc
Q 005628 189 SEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTM 264 (687)
Q Consensus 189 P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~ 264 (687)
+....+...-..+.+.|++++|+.+|+++....- .+ ...|..+-..|. ..|++++|...|.-.
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a-- 73 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYF----------YLHDYAKALEYHHHD-- 73 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHH----------HhcCHHHHHHHHHHH--
Confidence 3446677777888999999999999999997632 23 346777777777 789999999988511
Q ss_pred ccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCC-CCccccchhhHhhccccccCCCcch
Q 005628 265 NSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQ 341 (687)
Q Consensus 265 ~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~-Pd~~ty~~~~li~g~~~~a~~~~~~ 341 (687)
.++....+-. ....|..+-.. +...|++++|...|++..+..-. ++...
T Consensus 74 --l~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~-------------------- 125 (406)
T 3sf4_A 74 --LTLARTIGDQLGEAKASGNLGNT------LKVLGNFDEAIVCCQRHLDISRELNDKVG-------------------- 125 (406)
T ss_dssp --HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHHTCHHH--------------------
T ss_pred --HHHHHhccccHHHHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHHHHhcccccc--------------------
Confidence 1111111111 23346666666 88999999999999877653100 00000
Q ss_pred hcccCCCCChhhhHHHHHHHHHhhcc--------------------HHHHHHHHHHHHh----CCCCC-CHHHHHHHHHH
Q 005628 342 SRKKDWSIDNQDADEIRLSEDAKKYA--------------------FQRGFEIYEKMCL----DEVPM-NEASLTAVGRM 396 (687)
Q Consensus 342 m~~~g~~pd~~tyn~~lI~~~~k~g~--------------------~~~A~~lf~~M~~----~gi~p-d~~tyn~LI~~ 396 (687)
...++.. +-..|...|+ +++|.+.|++... .+-.| ...+|..+-..
T Consensus 126 --------~~~~~~~-l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 196 (406)
T 3sf4_A 126 --------EARALYN-LGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNT 196 (406)
T ss_dssp --------HHHHHHH-HHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --------hHHHHHH-HHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 0123344 6677888888 9999999887653 22112 23578888899
Q ss_pred HHHcCChHHHHHHHHHHHHcC-CCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLG-INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPE-EPELEALLRV 466 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g-~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd-~~ty~~Li~~ 466 (687)
|...|++++|...+++..... -.++ ..+|..+-..|...|+.++|...+++..+. +-.+. ..+|..+-..
T Consensus 197 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 276 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNT 276 (406)
T ss_dssp HHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHH
Confidence 999999999999999876431 0112 247888889999999999999999987643 21111 5678888999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|++++|...+++....
T Consensus 277 ~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 277 YTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 99999999999999987654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=72.47 Aligned_cols=165 Identities=13% Similarity=-0.019 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHH
Q 005628 227 YHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (687)
Q Consensus 227 ~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~l 306 (687)
..|..+...+. ..|+.++|...|. +.... .-.+...|..+... +...|++++|...
T Consensus 9 ~~~~~~~~~~~----------~~~~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~A~~~ 64 (186)
T 3as5_A 9 VYYRDKGISHA----------KAGRYSQAVMLLE-------QVYDA-DAFDVDVALHLGIA------YVKTGAVDRGTEL 64 (186)
T ss_dssp HHHHHHHHHHH----------HHTCHHHHHHHHT-------TTCCT-TSCCHHHHHHHHHH------HHHTTCHHHHHHH
T ss_pred HHHHHHHHHHH----------HhcCHHHHHHHHH-------HHHHh-CccChHHHHHHHHH------HHHcCCHHHHHHH
Confidence 34555566666 6789999999995 33332 11245557777777 8899999999999
Q ss_pred HHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC
Q 005628 307 FNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN 386 (687)
Q Consensus 307 f~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd 386 (687)
|++..+.. |+ +...|.. +...|...|++++|.+.|+++.... +.+
T Consensus 65 ~~~~~~~~--~~-------------------------------~~~~~~~-~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 109 (186)
T 3as5_A 65 LERSLADA--PD-------------------------------NVKVATV-LGLTYVQVQKYDLAVPLLIKVAEAN-PIN 109 (186)
T ss_dssp HHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhcC--CC-------------------------------CHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcC-cHh
Confidence 99887652 22 1223334 6778889999999999999988753 357
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
...+..+...+...|++++|...+++..... ..+...|..+...+...|+.++|.+.++...+.
T Consensus 110 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7889999999999999999999999988763 345678899999999999999999999988653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.18 E-value=9.6e-06 Score=80.98 Aligned_cols=236 Identities=9% Similarity=-0.026 Sum_probs=146.2
Q ss_pred hhcCCCchhhhHHHhhhcCCCC-CCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHH
Q 005628 162 QRTNDSGQYKVRGITDEKGSKK-SKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE------GIKL-GQYHYNVLL 233 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~-~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~------Gi~p-d~~tyn~Ll 233 (687)
..++.++|...|++-.+.-.+. ....+....+|..+-..|...|++++|+..|++.... +-.| ...+|..+-
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 3456666666666644311000 0011223468889999999999999999999998854 2223 355778888
Q ss_pred HHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc----CCC--C-CccchhccccccccccccccCCChhhHHHH
Q 005628 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS----RDM--D-NNGQLDYGSSPMIDKLESNSSYRFDDLDST 306 (687)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~----~g~--~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~l 306 (687)
..|. ..|++++|...|. +.... .+- + ....|..+-.. +...|++++|...
T Consensus 93 ~~~~----------~~g~~~~A~~~~~-------~al~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~ 149 (283)
T 3edt_B 93 VLYG----------KRGKYKEAEPLCK-------RALEIREKVLGKFHPDVAKQLNNLALL------CQNQGKAEEVEYY 149 (283)
T ss_dssp HHHH----------TTTCHHHHHHHHH-------HHHHHHHHHHCTTCHHHHHHHHHHHHH------HHTTTCHHHHHHH
T ss_pred HHHH----------HhccHHHHHHHHH-------HHHHHHHHHcCCCChHHHHHHHHHHHH------HHHcCCHHHHHHH
Confidence 8888 8899999999985 22211 011 1 33447777777 8999999999999
Q ss_pred HHHHHhcC---CCCCccccchhhHhhccccccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC-
Q 005628 307 FNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD- 381 (687)
Q Consensus 307 f~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~- 381 (687)
|++..+.- ..|+ .| ...++.. +-..|.+.|++++|.++|++....
T Consensus 150 ~~~al~~~~~~~~~~-----------------------------~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~~l~~~ 199 (283)
T 3edt_B 150 YRRALEIYATRLGPD-----------------------------DPNVAKTKNN-LASCYLKQGKYQDAETLYKEILTRA 199 (283)
T ss_dssp HHHHHHHHHHHSCTT-----------------------------CHHHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC-----------------------------CHHHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 99876530 0011 12 2345666 778999999999999999998753
Q ss_pred ------CCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHH---HcC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 382 ------EVPMNE-ASLTAVGRMAMSMGDGDMAFDMVKRMK---SLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 382 ------gi~pd~-~tyn~LI~~~~~~g~~~~A~~l~~~M~---~~g--~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
...+.. ..|..+...+...+....+..+..... ..+ ......+|..+...|...|+.++|..+|++..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 279 (283)
T 3edt_B 200 HEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCAS 279 (283)
T ss_dssp HHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 122222 233333333333333222222211111 111 11234578888999999999999999999876
Q ss_pred H
Q 005628 450 E 450 (687)
Q Consensus 450 ~ 450 (687)
+
T Consensus 280 ~ 280 (283)
T 3edt_B 280 R 280 (283)
T ss_dssp T
T ss_pred H
Confidence 5
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.16 E-value=0.00012 Score=81.72 Aligned_cols=241 Identities=10% Similarity=0.015 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchh-------hhh
Q 005628 192 FQLRVELDMCSKR----GDV----MGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGM-------RTL 256 (687)
Q Consensus 192 ~tyn~lI~~~~k~----g~~----~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~-------~A~ 256 (687)
..|...|...-.. ++. ..|+.+|++.... .+-+...|..+...+..... .-...|+++ +|.
T Consensus 231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~---~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSK---LLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHH---HHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhch---hhhhccchhhhhhhhHHHH
Confidence 5677666544332 232 4788899998865 33467777777777662100 000157776 888
Q ss_pred hhhhhcccccccccccCCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcccccc
Q 005628 257 DTFEVSTMNSTELGDSRDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLE 335 (687)
Q Consensus 257 ~lf~~~~~~s~em~~~~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a 335 (687)
.+|. +-... -.+ +...|..+... +.+.|++++|..+|+...+. .|+..+
T Consensus 307 ~~~~-------~Al~~-~~p~~~~l~~~~~~~------~~~~g~~~~A~~~~~~al~~--~p~~~~-------------- 356 (530)
T 2ooe_A 307 NIYE-------RAIST-LLKKNMLLYFAYADY------EESRMKYEKVHSIYNRLLAI--EDIDPT-------------- 356 (530)
T ss_dssp HHHH-------HHTTT-TCSSCHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHS--SSSCHH--------------
T ss_pred HHHH-------HHHHH-hCcccHHHHHHHHHH------HHhcCCHHHHHHHHHHHhCc--cccCch--------------
Confidence 8885 22221 123 44558888777 88899999999999988874 343211
Q ss_pred CCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHH
Q 005628 336 RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 336 ~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~-~~~~~g~~~~A~~l~~~M~ 414 (687)
..|.. ....+.+.|++++|.++|++..+... .+...|-.... .+...|+.++|..+|+...
T Consensus 357 ----------------~~~~~-~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 357 ----------------LVYIQ-YMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp ----------------HHHHH-HHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred ----------------HHHHH-HHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 13444 66677789999999999999887532 12223322222 2346899999999999877
Q ss_pred HcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 415 SLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 415 ~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g-v~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+. .| +...|..++..+.+.|+.++|..+|+.....+ ..|+ ...|...+......|+.+.+..++.++...
T Consensus 419 ~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65 24 46788999999999999999999999998864 2333 558888899999999999999999998877
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-05 Score=69.21 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=100.5
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|..+|+++.+.. |+ +...|.. +...+...|++++|.+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~--~~-------------------------------~~~~~~~-~a~~~~~~~~~~~A~~ 56 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELD--PR-------------------------------SAEAWYN-LGNAYYKQGDYDEAIE 56 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TT-------------------------------CHHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHcC--Cc-------------------------------chhHHHH-HHHHHHHhcCHHHHHH
Confidence 778899999999999987653 21 1223334 6778889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
+|+++...+ +.+...|..+...+...|++++|..+++++.... ..+...+..+...+.+.|+.++|...++++.+.
T Consensus 57 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 57 YYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHC-CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 999998754 3467889999999999999999999999998763 235678888999999999999999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00015 Score=68.01 Aligned_cols=156 Identities=13% Similarity=0.054 Sum_probs=123.0
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...|.. +-..|.+.|++++|.+
T Consensus 15 ~~~~g~~~~A~~~~~~al~~--~p~~-------------------------------~~~~~~-la~~~~~~~~~~~a~~ 60 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKA--DPNN-------------------------------VETLLK-LGKTYMDIGLPNDAIE 60 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--CTTC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HHHHHHHCCCHHHHHH
Confidence 77889999999999987764 2332 223334 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (687)
.+....... +-+...+..+-..+...++++.|...+....... +-+...+..+-..|.+.|+.++|.+.|+...+..
T Consensus 61 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~- 137 (184)
T 3vtx_A 61 SLKKFVVLD-TTSAEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK- 137 (184)
T ss_dssp HHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhcC-chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-
Confidence 999887653 2356777778888889999999999998877652 2345677888888999999999999999988753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+-+...|..+-..|.+.|++++|...|++..+.
T Consensus 138 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 138 PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 236778888999999999999999999987765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.09 E-value=7e-05 Score=74.73 Aligned_cols=190 Identities=11% Similarity=-0.018 Sum_probs=121.8
Q ss_pred CCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhH
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQL 327 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~l 327 (687)
..|++++|...|. +.... .-.+...|..+-.. +...|++++|...|++..+..-.|+...
T Consensus 15 ~~~~~~~A~~~~~-------~~l~~-~p~~~~~~~~l~~~------~~~~~~~~~A~~~~~~a~~~~~~~~~~~------ 74 (272)
T 3u4t_A 15 KNNNYAEAIEVFN-------KLEAK-KYNSPYIYNRRAVC------YYELAKYDLAQKDIETYFSKVNATKAKS------ 74 (272)
T ss_dssp TTTCHHHHHHHHH-------HHHHT-TCCCSTTHHHHHHH------HHHTTCHHHHHHHHHHHHTTSCTTTCCH------
T ss_pred HhcCHHHHHHHHH-------HHHHh-CCCcHHHHHHHHHH------HHHHhhHHHHHHHHHHHHhccCchhHHH------
Confidence 6778888888884 33322 11244456666666 7788888888888887776331121111
Q ss_pred hhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHH
Q 005628 328 LDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAF 407 (687)
Q Consensus 328 i~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~ 407 (687)
..|.. +-..|...|++++|.+.|++..+.. +.+..+|..+-..|...|++++|.
T Consensus 75 ------------------------~~~~~-lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 75 ------------------------ADFEY-YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp ------------------------HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred ------------------------HHHHH-HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHH
Confidence 11223 5567778888888888888877643 224567888888888888888888
Q ss_pred HHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHHH
Q 005628 408 DMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK---GDRVYYLLHKL 483 (687)
Q Consensus 408 ~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~---~~~A~~ll~~M 483 (687)
..|++..+. .|+. ..|..+-..+...+++++|.+.|+...+.. +.+...|..+-..+...|+ .++|...+++.
T Consensus 129 ~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 129 QYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 888776554 3433 444444424445568888888888877643 2235666667777777777 66777777766
Q ss_pred Hhc
Q 005628 484 RTS 486 (687)
Q Consensus 484 ~~~ 486 (687)
...
T Consensus 206 ~~~ 208 (272)
T 3u4t_A 206 IEV 208 (272)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=3.3e-05 Score=85.33 Aligned_cols=214 Identities=4% Similarity=-0.142 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCch-hhhhhhhhhcccccccccccCCCCCccchhcc
Q 005628 206 DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSG-MRTLDTFEVSTMNSTELGDSRDMDNNGQLDYG 284 (687)
Q Consensus 206 ~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~-~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~L 284 (687)
.+++|+..+++.... -..+...|..+-..|. ..|++ ++|...|. +.... .-.+...|..|
T Consensus 83 ~~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~----------~~g~~~~~A~~~~~-------~al~~-~p~~~~a~~~l 143 (474)
T 4abn_A 83 EMEKTLQQMEEVLGS-AQVEAQALMLKGKALN----------VTPDYSPEAEVLLS-------KAVKL-EPELVEAWNQL 143 (474)
T ss_dssp HHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHT----------SSSSCCHHHHHHHH-------HHHHH-CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhcc-CchhHHHHHHHHHHHH----------hccccHHHHHHHHH-------HHHhh-CCCCHHHHHHH
Confidence 367777778765532 2236677777777777 78999 99999995 33222 11245568888
Q ss_pred ccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh
Q 005628 285 SSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK 364 (687)
Q Consensus 285 i~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k 364 (687)
-.. |.+.|++++|...|++..+.. |+... |.. +-..|..
T Consensus 144 g~~------~~~~g~~~~A~~~~~~al~~~--p~~~~--------------------------------~~~-lg~~~~~ 182 (474)
T 4abn_A 144 GEV------YWKKGDVTSAHTCFSGALTHC--KNKVS--------------------------------LQN-LSMVLRQ 182 (474)
T ss_dssp HHH------HHHHTCHHHHHHHHHHHHTTC--CCHHH--------------------------------HHH-HHHHHTT
T ss_pred HHH------HHHcCCHHHHHHHHHHHHhhC--CCHHH--------------------------------HHH-HHHHHHH
Confidence 777 999999999999999887653 55322 223 5566667
Q ss_pred h---------ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc--------CChHHHHHHHHHHHHcCCCC----Ccc
Q 005628 365 K---------YAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM--------GDGDMAFDMVKRMKSLGINP----RLR 423 (687)
Q Consensus 365 ~---------g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~--------g~~~~A~~l~~~M~~~g~~P----d~~ 423 (687)
. |++++|.+.|++..+.. +-+...|..+-.+|... |++++|...|++..+. .| +..
T Consensus 183 ~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~ 259 (474)
T 4abn_A 183 LQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPD 259 (474)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHH
T ss_pred hccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHH
Confidence 7 99999999999988753 33678899999999998 9999999999998875 35 678
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M 483 (687)
.|..+-..|...|++++|.+.|++..+.. .-+...+..+-..+...|++++|...+.++
T Consensus 260 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 260 LHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 89999999999999999999999988753 225667888889999999999998765544
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00016 Score=77.39 Aligned_cols=238 Identities=9% Similarity=-0.031 Sum_probs=172.4
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGD-VMGAIRLYDKAQREGIKLGQYHYNVLLYLCS 237 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~-~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~ 237 (687)
.+.+.++.++|++.|+...... | -+...|+.+-..+.+.|+ +++|+..|++..... +-+...|+.+-.++.
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~--P-----~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELN--A-----ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHCCChHHHHHHHHHHHHhC--c-----cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 5567889999999999986532 1 134788889999999996 999999999999753 225678888888888
Q ss_pred hcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCC
Q 005628 238 SAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFS 317 (687)
Q Consensus 238 ~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~P 317 (687)
..|++++|+..|. +.... .-.+...|..+-.. +.+.|++++|+..|+++.+.. |
T Consensus 178 ----------~~g~~~eAl~~~~-------kal~l-dP~~~~a~~~lg~~------~~~~g~~~eAl~~~~~al~l~--P 231 (382)
T 2h6f_A 178 ----------WLRDPSQELEFIA-------DILNQ-DAKNYHAWQHRQWV------IQEFKLWDNELQYVDQLLKED--V 231 (382)
T ss_dssp ----------HHTCCTTHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--T
T ss_pred ----------HccCHHHHHHHHH-------HHHHh-CccCHHHHHHHHHH------HHHcCChHHHHHHHHHHHHhC--C
Confidence 7789999999995 33332 22256668877777 888999999999999998763 3
Q ss_pred CccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh-hccHHHH-----HHHHHHHHhCCCCCCHHHHH
Q 005628 318 NGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK-KYAFQRG-----FEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 318 d~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k-~g~~~~A-----~~lf~~M~~~gi~pd~~tyn 391 (687)
+. ...|+. +-..|.+ .|..++| ++.|++..... +-+...|+
T Consensus 232 ~~-------------------------------~~a~~~-lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~ 278 (382)
T 2h6f_A 232 RN-------------------------------NSVWNQ-RYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWN 278 (382)
T ss_dssp TC-------------------------------HHHHHH-HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred CC-------------------------------HHHHHH-HHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHH
Confidence 21 223334 4455556 5554666 57788777643 23577899
Q ss_pred HHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC---------ChHHHHHHHHHH-HHCCCCCC-HH
Q 005628 392 AVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG---------DVDKACSVEEHM-LEHGVYPE-EP 458 (687)
Q Consensus 392 ~LI~~~~~~g--~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g---------~~~~A~~l~~~M-~~~gv~pd-~~ 458 (687)
.+-..+.+.| +.++|++.+.++ +. -..+...+..+...|.+.| ..++|.++++.+ .+ +.|. ..
T Consensus 279 ~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~ 354 (382)
T 2h6f_A 279 YLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKE 354 (382)
T ss_dssp HHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHH
T ss_pred HHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHH
Confidence 9999999988 689999999887 22 2334577888888998874 358999999998 44 3343 34
Q ss_pred HHHHHHHHH
Q 005628 459 ELEALLRVS 467 (687)
Q Consensus 459 ty~~Li~~~ 467 (687)
-|..+...+
T Consensus 355 ~w~~~~~~l 363 (382)
T 2h6f_A 355 YWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00051 Score=64.27 Aligned_cols=156 Identities=14% Similarity=0.057 Sum_probs=121.9
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL 429 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI 429 (687)
+...|.. |=..|.+.|++++|.+.|++..+.. +-+..+|..+...|.+.|++++|...+....... .-+...+..+-
T Consensus 4 ~~~iy~~-lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMD-IGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 3456777 7788999999999999999988754 2367889999999999999999999999987663 23455667777
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC-hhHHH-HHHHHHcCHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS-PSTAD-VIAKWFNSKEA 507 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~-p~t~~-~I~~~~~~~~~ 507 (687)
..+...++.+.|.+.+....+.. +-+...+..+-..|.+.|++++|+..|++.... .+. +..+. .-..+...+..
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 88899999999999999987753 336778889999999999999999999998887 322 22443 34455555655
Q ss_pred HHhh
Q 005628 508 ARLG 511 (687)
Q Consensus 508 ~~a~ 511 (687)
.+|.
T Consensus 158 ~~A~ 161 (184)
T 3vtx_A 158 DEAV 161 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.00 E-value=0.0015 Score=71.85 Aligned_cols=278 Identities=12% Similarity=0.070 Sum_probs=145.8
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.++.++|.+.|+.-.+.| +...+..|-..|.. .++.++|++.|++..+.| +...+..|-..|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 195 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG---------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSR 195 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhc
Confidence 567888888888876543 12566666667776 788999999999888775 66777777777763
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
.. ...++.++|...|. +..+. | +...+..|-.. +.......+++++|..+|++..+.|..
T Consensus 196 g~------g~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~lg~~--y~~g~g~~~~~~~A~~~~~~a~~~~~~-- 255 (490)
T 2xm6_A 196 GL------GVERNDAISAQWYR-------KSATS-G--DELGQLHLADM--YYFGIGVTQDYTQSRVLFSQSAEQGNS-- 255 (490)
T ss_dssp TS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH--HHHTSSSCCCHHHHHHHHHHHHTTTCH--
T ss_pred CC------CCCcCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH--HHcCCCCCCCHHHHHHHHHHHHHCCCH--
Confidence 11 13678888888884 22222 2 22333333333 000022377888888888887776521
Q ss_pred ccccc-hhh-Hhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhh-----ccHHHHHHHHHHHHhCCCCCC
Q 005628 319 GHMKL-NSQ-LLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKK-----YAFQRGFEIYEKMCLDEVPMN 386 (687)
Q Consensus 319 ~~ty~-~~~-li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~-----g~~~~A~~lf~~M~~~gi~pd 386 (687)
..+. .+. ...|.. ..|...+......| +...+.. |-..|... ++.++|.+.|++..+.| +
T Consensus 256 -~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~-Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~ 327 (490)
T 2xm6_A 256 -IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYY-LAHLYDKGAEGVAKNREQAISWYTKSAEQG---D 327 (490)
T ss_dssp -HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHH-HHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---C
T ss_pred -HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHH-HHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---C
Confidence 1111 000 001100 11222222222221 1112222 22333333 45555555555555543 3
Q ss_pred HHHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 387 EASLTAVGRMAMSMG---DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g---~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
...+..|-..|...| +.++|.+.|+...+.| +...+..|-..|.. .++.++|.+.|+...+.| +...
T Consensus 328 ~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a 401 (490)
T 2xm6_A 328 ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAA 401 (490)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHH
Confidence 344444444554444 4555555555555443 33444444445554 455556666555555544 3444
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 460 LEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 460 y~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
+..|-..|.+ .++.++|...|++-.+.
T Consensus 402 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 432 (490)
T 2xm6_A 402 QVQLGEIYYYGLGVERDYVQAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 4555555554 55555665555555555
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.98 E-value=7.9e-05 Score=79.17 Aligned_cols=237 Identities=9% Similarity=0.044 Sum_probs=161.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc
Q 005628 198 LDMCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (687)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~ 272 (687)
-..+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.++|...+.-. .++...
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~----------~~~~~~~A~~~~~~a----l~~~~~ 175 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY----------YMKQTYFSMDYARQA----YEIYKE 175 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHT
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH----------HcCCHHHHHHHHHHH----HHHHHh
Confidence 345678899999999999998531 1133 345666666666 778888888887411 111111
Q ss_pred CCC-C--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCC-CCccccchhhHhhccccccCCCcchhcccCCC
Q 005628 273 RDM-D--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQF-SNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS 348 (687)
Q Consensus 273 ~g~-~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~-Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~ 348 (687)
.+- . ...+++.+-.. +...|++++|...|.+..+..-. +|...
T Consensus 176 ~~~~~~~~~~~~~~lg~~------~~~~g~~~~A~~~~~~al~~~~~~~~~~~--------------------------- 222 (383)
T 3ulq_A 176 HEAYNIRLLQCHSLFATN------FLDLKQYEDAISHFQKAYSMAEAEKQPQL--------------------------- 222 (383)
T ss_dssp CSTTHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH---------------------------
T ss_pred CccchHHHHHHHHHHHHH------HHHhcCHHHHHHHHHHHHHHHHHcCChHH---------------------------
Confidence 111 1 12346666666 88999999999999876643100 11100
Q ss_pred CChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCC
Q 005628 349 IDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GIN 419 (687)
Q Consensus 349 pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~ 419 (687)
...+|+. +-..|...|++++|.+.|++..+. +. +....++..+-..|.+.|++++|...+++.... +-.
T Consensus 223 -~~~~~~~-lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 300 (383)
T 3ulq_A 223 -MGRTLYN-IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300 (383)
T ss_dssp -HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred -HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 0124445 778889999999999999988761 33 334678999999999999999999999987643 221
Q ss_pred CCcchHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 420 PRLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 420 Pd~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.....+..+-..|...|+ +++|..+++.. +..|+ ...+..|-..|.+.|++++|...|++....
T Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 222335667777888888 77777777765 33333 346777888999999999999999987653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00042 Score=72.93 Aligned_cols=274 Identities=9% Similarity=-0.024 Sum_probs=173.9
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS--EQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLGQ----YHYNVL 232 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P--~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi-~pd~----~tyn~L 232 (687)
....++.++|...++...... +.. .| -...++.+-..+...|++++|...+++.....- .++. .+++.+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~--~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 99 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEEL--PPG--WFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 99 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--CTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC--CCC--chhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 335788899999998865432 111 11 123566777788899999999999999874211 1222 224445
Q ss_pred HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC----CccchhccccccccccccccCCChhhHHHHHH
Q 005628 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFN 308 (687)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~----d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~ 308 (687)
-..+. ..|++++|...+.-. .+.....+-. ....++.+-.. +...|++++|...++
T Consensus 100 a~~~~----------~~G~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~g~~~~A~~~~~ 159 (373)
T 1hz4_A 100 SEILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASAR 159 (373)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHH
T ss_pred HHHHH----------HCCCHHHHHHHHHHH----HHHHHHhccccCcHHHHHHHHHHHH------HHHhcCHHHHHHHHH
Confidence 55555 679999999988511 1111111111 12234555555 788999999999998
Q ss_pred HHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--
Q 005628 309 EKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN-- 386 (687)
Q Consensus 309 eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd-- 386 (687)
+.....-..... ....+|.. +-..+...|++++|...+++.....-.++
T Consensus 160 ~al~~~~~~~~~----------------------------~~~~~~~~-la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~ 210 (373)
T 1hz4_A 160 SGIEVLSSYQPQ----------------------------QQLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYH 210 (373)
T ss_dssp HHHHHTTTSCGG----------------------------GGHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHHHHhhccCcH----------------------------HHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHHHhccCcc
Confidence 876542111000 01123444 66778899999999999998865311111
Q ss_pred HHHHH----HHHHHHHHcCChHHHHHHHHHHHHcCCCCC---cchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC
Q 005628 387 EASLT----AVGRMAMSMGDGDMAFDMVKRMKSLGINPR---LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP 455 (687)
Q Consensus 387 ~~tyn----~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd---~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p 455 (687)
..... .++..+...|++++|...+++.......+. ...+..+...+...|+.++|...++..... |..+
T Consensus 211 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 290 (373)
T 1hz4_A 211 SDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMS 290 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred hhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchh
Confidence 11111 233447789999999999987654321111 224667778899999999999999887543 3323
Q ss_pred CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 456 EEP-ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 456 d~~-ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.. .+..+-..+...|+.++|...|++....
T Consensus 291 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 291 DLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 332 5666777788999999999998887654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.0023 Score=70.31 Aligned_cols=249 Identities=10% Similarity=-0.053 Sum_probs=150.0
Q ss_pred hcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 163 RTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSK----RGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 163 ~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k----~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.++...|.+.|+.-.+.| +...+..|=..|.. .++.++|++.|++..+.| +...+..|=..|..
T Consensus 56 ~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHE 123 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHc
Confidence 456677888888775432 22566667677777 889999999999988876 55666666666662
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
.. +..++.++|...|. +..+. | +...+..|-.. +.......++.++|...|++..+.| +
T Consensus 124 g~------g~~~~~~~A~~~~~-------~a~~~-~--~~~a~~~Lg~~--y~~g~g~~~d~~~A~~~~~~a~~~~---~ 182 (490)
T 2xm6_A 124 GN------GVKVDKAESVKWFR-------LAAEQ-G--RDSGQQSMGDA--YFEGDGVTRDYVMAREWYSKAAEQG---N 182 (490)
T ss_dssp TS------SSCCCHHHHHHHHH-------HHHHT-T--CHHHHHHHHHH--HHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CC------CCCCCHHHHHHHHH-------HHHHC-C--CHHHHHHHHHH--HHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 11 02577888888884 22222 2 22222222222 0000223678888998888877664 2
Q ss_pred ccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh----hccHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 005628 319 GHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK----KYAFQRGFEIYEKMCLDEVPMNEASLTAVG 394 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k----~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI 394 (687)
...+. . |-..|.. .++.++|.+.|++..+.| +...+..|-
T Consensus 183 ~~a~~--------------------------------~-Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 226 (490)
T 2xm6_A 183 VWSCN--------------------------------Q-LGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLA 226 (490)
T ss_dssp HHHHH--------------------------------H-HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHH--------------------------------H-HHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 22221 2 3333333 567777777777766654 455666666
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 395 RMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 395 ~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
..|.. .++.++|..+|+...+.| +...+..|-..|.. .++.++|.+.|+...+.| +...+..|-..
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~ 300 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHL 300 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHH
Confidence 66665 667777777777666554 23344444444555 667777777777766554 44455555566
Q ss_pred HHhc-----CChHHHHHHHHHHHhc
Q 005628 467 SVEA-----GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~-----g~~~~A~~ll~~M~~~ 486 (687)
|... ++.++|...|++..+.
T Consensus 301 y~~~~~g~~~~~~~A~~~~~~a~~~ 325 (490)
T 2xm6_A 301 YDKGAEGVAKNREQAISWYTKSAEQ 325 (490)
T ss_dssp HHHCBTTBCCCHHHHHHHHHHHHHT
T ss_pred HHcCCCCCcCCHHHHHHHHHHHHhc
Confidence 6655 6777777777766665
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00022 Score=72.95 Aligned_cols=130 Identities=9% Similarity=-0.027 Sum_probs=90.6
Q ss_pred HHHHHHhh-ccHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc------hH
Q 005628 358 RLSEDAKK-YAFQRGFEIYEKMCLD----EVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------SY 425 (687)
Q Consensus 358 lI~~~~k~-g~~~~A~~lf~~M~~~----gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~------ty 425 (687)
+-..|... |++++|.+.|++..+. +-.+. ..+|+.+-..|.+.|++++|...|++........... .|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 202 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 55677775 9999999999987652 11111 3578889999999999999999999988764222221 56
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--hcCChHHHHHHHHHHHhccCCCChh
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYPEE------PELEALLRVSV--EAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~------~ty~~Li~~~~--~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
..+..++...|+.++|...|++..+ +.|+. ..+..|+.+|. ..+++++|...|+++.. +.|.
T Consensus 203 ~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~----l~~~ 272 (292)
T 1qqe_A 203 LKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR----LDKW 272 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC----CCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc----cHHH
Confidence 7777888999999999999998765 23332 23445666664 45667788887765433 4555
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00081 Score=70.70 Aligned_cols=240 Identities=14% Similarity=-0.012 Sum_probs=156.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccC
Q 005628 198 LDMCSKRGDVMGAIRLYDKAQREGIKLGQY----HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSR 273 (687)
Q Consensus 198 I~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~----tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~ 273 (687)
-..+...|++++|..++++.....-..+.. .++.+-..+. ..|++++|...+.-. .++....
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~a----l~~~~~~ 86 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQH 86 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH----------hcCcHHHHHHHHHHH----HHHHHhc
Confidence 345567899999999999988654222332 3444445555 678899999888511 1111111
Q ss_pred CCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCC--C
Q 005628 274 DMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWS--I 349 (687)
Q Consensus 274 g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~--p 349 (687)
+.. -..+++.+-.. +...|++++|...+++.....-. .+-. |
T Consensus 87 ~~~~~~~~~~~~la~~------~~~~G~~~~A~~~~~~al~~~~~----------------------------~~~~~~~ 132 (373)
T 1hz4_A 87 DVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINE----------------------------QHLEQLP 132 (373)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHH----------------------------TTCTTST
T ss_pred CcHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHHHHHHHH----------------------------hccccCc
Confidence 111 11123444445 77899999999999887653100 0000 1
Q ss_pred C-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-c
Q 005628 350 D-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP----MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-R 423 (687)
Q Consensus 350 d-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~----pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ 423 (687)
. ...+.. +-..|...|++++|...+++....... ....+|..+-..+...|++++|...+++.....-.++. .
T Consensus 133 ~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~ 211 (373)
T 1hz4_A 133 MHEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHS 211 (373)
T ss_dssp HHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcch
Confidence 1 112333 556788999999999999987653211 13467888889999999999999999988754212221 1
Q ss_pred hHH-----HHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 424 SYG-----PALSVFCNNGDVDKACSVEEHMLEHGVYP---EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 424 ty~-----~lI~~~~~~g~~~~A~~l~~~M~~~gv~p---d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+. ..+..+...|+.++|...+++.......+ ....+..+...+...|++++|..++++....
T Consensus 212 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 212 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 222 23344779999999999999886543221 1345677888999999999999999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00016 Score=79.72 Aligned_cols=156 Identities=8% Similarity=-0.099 Sum_probs=130.9
Q ss_pred cccCCCh-hhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRF-DDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~-~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
+...|++ ++|...|++..+.. |+. ...|.. +-..|.+.|++++|.
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~--p~~-------------------------------~~a~~~-lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLE--PEL-------------------------------VEAWNQ-LGEVYWKKGDVTSAH 157 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHC--TTC-------------------------------HHHHHH-HHHHHHHHTCHHHHH
T ss_pred HHhccccHHHHHHHHHHHHhhC--CCC-------------------------------HHHHHH-HHHHHHHcCCHHHHH
Confidence 7889999 99999999887652 321 223445 778899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC--------
Q 005628 373 EIYEKMCLDEVPMNEASLTAVGRMAMSM---------GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-------- 435 (687)
Q Consensus 373 ~lf~~M~~~gi~pd~~tyn~LI~~~~~~---------g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~-------- 435 (687)
+.|++..+.. |+...|..+-..|... |++++|.+.|++..+.. .-+...|..+-..|...
T Consensus 158 ~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 9999998764 7788999999999999 99999999999988763 23467888888899888
Q ss_pred CChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVY--PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~--pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|++++|.+.|+...+..-. -+...|..+-..|...|++++|...|++....
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 287 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999875310 37889999999999999999999999998876
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0017 Score=78.48 Aligned_cols=246 Identities=12% Similarity=-0.003 Sum_probs=161.9
Q ss_pred hhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Q 005628 162 QRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAV 241 (687)
Q Consensus 162 ~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~ 241 (687)
..++.++|.++.+... .. .+|..+=.++-+.|++++|+..|.+. -|...|.-++..|.
T Consensus 1088 ~i~nldrAiE~Aervn------~p------~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~---- 1145 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERCN------EP------AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAAN---- 1145 (1630)
T ss_pred HHhhHHHHHHHHHhcC------CH------HHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHH----
Confidence 6667888888887661 11 68888888888889999999988664 36777888888888
Q ss_pred CCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccc
Q 005628 242 GVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHM 321 (687)
Q Consensus 242 ~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~t 321 (687)
+.|++++|.+.+. |-.+ -.++....+-+.-+ |++.+++++...+.. .|+...
T Consensus 1146 ------~lGkyEEAIeyL~--------mArk-~~~e~~Idt~Lafa------YAKl~rleele~fI~-------~~n~ad 1197 (1630)
T 1xi4_A 1146 ------TSGNWEELVKYLQ--------MARK-KARESYVETELIFA------LAKTNRLAELEEFIN-------GPNNAH 1197 (1630)
T ss_pred ------HcCCHHHHHHHHH--------HHHh-hcccccccHHHHHH------HHhhcCHHHHHHHHh-------CCCHHH
Confidence 7888888888883 3221 11222233346666 888888775443321 233333
Q ss_pred cchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 005628 322 KLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRM 396 (687)
Q Consensus 322 y~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~ 396 (687)
|. .+-+.+. ..|..+|... ..|.. +...|++.|++++|.+.+++- -+..+|.-+-.+
T Consensus 1198 ~~--~iGd~le~eg~YeeA~~~Y~kA---------~ny~r-LA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1198 IQ--QVGDRCYDEKMYDAAKLLYNNV---------SNFGR-LASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HH--HHHHHHHhcCCHHHHHHHHHhh---------hHHHH-HHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 32 1111111 2333333332 25666 889999999999999999876 366888888888
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--CChH
Q 005628 397 AMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA--GKGD 474 (687)
Q Consensus 397 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~--g~~~ 474 (687)
|...|++..|...... +.-+...+..++..|-+.|.+++|..+++.-.... .-....|+-|-..|++. +++.
T Consensus 1260 cve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 8888888888876653 33355567788888999999999999987665433 33444565566666554 3344
Q ss_pred HHHHHHH
Q 005628 475 RVYYLLH 481 (687)
Q Consensus 475 ~A~~ll~ 481 (687)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 4444444
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00098 Score=63.76 Aligned_cols=124 Identities=10% Similarity=-0.049 Sum_probs=105.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+...|++++|.+.|++. +.|+...|..+-..|.+.|++++|...|+...... ..+...|..+-..|...|+
T Consensus 12 ~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 12 EGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 556778899999999999977 46789999999999999999999999999988763 3356788889999999999
Q ss_pred hHHHHHHHHHHHHCCC--------------CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGV--------------YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv--------------~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+...+..- .| ....|..+-..|.+.|++++|...|++....
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 9999999999987531 11 2367888889999999999999999999887
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0012 Score=68.11 Aligned_cols=123 Identities=9% Similarity=0.086 Sum_probs=93.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHH--cC--ChHHHHHHHHHHHHcCCCCCcchHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPM-----NEASLTAVGRMAMS--MG--DGDMAFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~p-----d~~tyn~LI~~~~~--~g--~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
++..|.+.|+.+.|.+++++|.+. .| +..+..-|..++.. .| +..+|+.+|+++... .|+..+-..|
T Consensus 142 ~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lL 217 (310)
T 3mv2_B 142 AIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGL 217 (310)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHH
Confidence 778999999999999999999874 46 36677777777333 34 899999999998655 3654455666
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC-----CC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 429 LSVFCNNGDVDKACSVEEHMLEH-----GV----YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 429 I~~~~~~g~~~~A~~l~~~M~~~-----gv----~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.++.+.|++++|.+.++.+.+. .- .-|..++.-+|..+...|+ +|.+++.++...
T Consensus 218 ln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 218 LNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 67899999999999999977653 11 2356666455555556676 889999999987
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0035 Score=60.71 Aligned_cols=131 Identities=8% Similarity=-0.029 Sum_probs=108.5
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV 431 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~ 431 (687)
..|.. +-..|.+.|++++|.+.|++..+....++...+..+-..+.+.|++++|...|+...... +-+...|..+-..
T Consensus 8 ~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKN-EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSAA 85 (228)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHHH
Confidence 34444 556788999999999999999887655788888889999999999999999999988653 1245678888899
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCNNGDVDKACSVEEHMLEHGVYPE-E-------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~~gv~pd-~-------~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|+.++|.+.|++..+.. |+ . ..|..+-..+...|++++|...|++....
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 999999999999999988753 33 3 45777777888999999999999999876
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0015 Score=63.43 Aligned_cols=142 Identities=10% Similarity=0.015 Sum_probs=109.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+..-.++.. .+.. +-..|.+.|++++|.+
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~~~--------------------------------~~~~-~~~~~~~~~~~~~A~~ 63 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQDSV--------------------------------TAYN-CGVCADNIKKYKEAAD 63 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCCHH--------------------------------HHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCCcH--------------------------------HHHH-HHHHHHHhhcHHHHHH
Confidence 678899999999999887754223332 2334 6677889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc--------chHHHHHHHHHhCCChHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--------RSYGPALSVFCNNGDVDKACSVE 445 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--------~ty~~lI~~~~~~g~~~~A~~l~ 445 (687)
.|++...... -+...|..+-..|...|++++|...|++..+. .|+. ..|..+=..+...|+.++|.+.|
T Consensus 64 ~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 140 (228)
T 4i17_A 64 YFDIAIKKNY-NLANAYIGKSAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENY 140 (228)
T ss_dssp HHHHHHHTTC-SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCc-chHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHH
Confidence 9999987542 25678999999999999999999999998875 2443 34666777788999999999999
Q ss_pred HHHHHCCCCCC---HHHHHHHHHHHHhcCCh
Q 005628 446 EHMLEHGVYPE---EPELEALLRVSVEAGKG 473 (687)
Q Consensus 446 ~~M~~~gv~pd---~~ty~~Li~~~~~~g~~ 473 (687)
+...+. .|+ ...|..+-..|...|..
T Consensus 141 ~~al~~--~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 141 KHATDV--TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHTTS--SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCcccHHHHHHHHHHHHHHHHH
Confidence 999764 565 45677777777766665
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00048 Score=72.97 Aligned_cols=234 Identities=10% Similarity=-0.018 Sum_probs=157.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCC
Q 005628 200 MCSKRGDVMGAIRLYDKAQREG-IKLG----QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (687)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~G-i~pd----~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g 274 (687)
.+...|++++|+..|++....- -.+| ..+|..+-..|. ..|+.+.|...+.-. .++....+
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~ 175 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYY----------HMKQTHVSMYHILQA----LDIYQNHP 175 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH----------HTTCHHHHHHHHHHH----HHHHHTST
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH----------HcCCcHHHHHHHHHH----HHHHHhCC
Confidence 4568899999999999988531 1133 345666666666 678888888877410 11111101
Q ss_pred -CC--CccchhccccccccccccccCCChhhHHHHHHHHHhcCC-CCCccccchhhHhhccccccCCCcchhcccCCCCC
Q 005628 275 -MD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQ-FSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID 350 (687)
Q Consensus 275 -~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~-~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd 350 (687)
.. -..+|+.+=.. +...|++++|...|.+..+..- .++... .
T Consensus 176 ~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~al~~~~~~~~~~~----------------------------~ 221 (378)
T 3q15_A 176 LYSIRTIQSLFVIAGN------YDDFKHYDKALPHLEAALELAMDIQNDRF----------------------------I 221 (378)
T ss_dssp TCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCHHH----------------------------H
T ss_pred CchhhHHHHHHHHHHH------HHHhCCHHHHHHHHHHHHHHHHHcCCHHH----------------------------H
Confidence 11 12336666666 8899999999999987654210 011100 1
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHh-----CCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC----CCC
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI----NPR 421 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~----~Pd 421 (687)
..+++. |-..|...|++++|.+.|++... .. +....++..+-..|.+.|++++|...+++.....- ...
T Consensus 222 ~~~~~~-lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 299 (378)
T 3q15_A 222 AISLLN-IANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFY 299 (378)
T ss_dssp HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCH
T ss_pred HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 123445 66788899999999999998876 33 23377889999999999999999999998876421 112
Q ss_pred cchHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 422 LRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...+..+-..|...++ +++|...++. .+..|+ ...+..|-..|.+.|+.++|...|++....
T Consensus 300 ~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 300 KELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2345555556667788 7777777776 333333 345667888899999999999999887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.0014 Score=55.97 Aligned_cols=91 Identities=20% Similarity=0.229 Sum_probs=42.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+...+...|++++|.++|+++.... +.+..++..+...+.+.|++++|..+|+.+.... ..+..++..+...|...|+
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 92 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD 92 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC
Confidence 3344455555555555555554432 1234444555555555555555555555544331 1233344444444444555
Q ss_pred hHHHHHHHHHHHH
Q 005628 438 VDKACSVEEHMLE 450 (687)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (687)
.++|...|+.+.+
T Consensus 93 ~~~A~~~~~~~~~ 105 (125)
T 1na0_A 93 YDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00061 Score=79.09 Aligned_cols=161 Identities=13% Similarity=0.086 Sum_probs=131.9
Q ss_pred chhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHH
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
.|+.|=.. +.+.|++++|...|++-.+. .|+. ...|+. |=
T Consensus 11 al~nLG~~------~~~~G~~~eAi~~~~kAl~l--~P~~-------------------------------~~a~~n-Lg 50 (723)
T 4gyw_A 11 SLNNLANI------KREQGNIEEAVRLYRKALEV--FPEF-------------------------------AAAHSN-LA 50 (723)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHH--CSCC-------------------------------HHHHHH-HH
T ss_pred HHHHHHHH------HHHcCCHHHHHHHHHHHHHh--CCCC-------------------------------HHHHHH-HH
Confidence 35555555 88999999999999987764 2432 234445 77
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~ 438 (687)
..|.+.|++++|.+.|++..+.. +-+...|+.|-..|.+.|++++|.+.|++..+. .|+ ...|+.+-..|.+.|++
T Consensus 51 ~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 51 SVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 88999999999999999988753 225789999999999999999999999988765 354 57899999999999999
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 439 DKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
++|.+.|++..+. .| +...|..|...|...|++++|.+.+++..+
T Consensus 128 ~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 9999999998875 34 577899999999999999999888887654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.0032 Score=68.19 Aligned_cols=300 Identities=8% Similarity=-0.062 Sum_probs=169.6
Q ss_pred HHhhhcCCCchhhhHHHhhh--cCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCC-CHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDE--KGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G-IKL-GQYHY 229 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~--~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-----G-i~p-d~~ty 229 (687)
.....|+.++|++.|+.-.+ +....+.......++|+.+-..|...|++++|...|++.... + ..+ ...+|
T Consensus 60 ~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~ 139 (472)
T 4g1t_A 60 LKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELD 139 (472)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHH
Confidence 34467899999998876432 111112212234578999999999999999999999987642 1 112 24555
Q ss_pred HHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHH
Q 005628 230 NVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 230 n~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+.+-.++... ..++.++|...|. +.... .-.+...+..+... ...+...++.++|...|++
T Consensus 140 ~~~g~~~~~~--------~~~~y~~A~~~~~-------kal~~-~p~~~~~~~~~~~~---~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 140 CEEGWTRLKC--------GGNQNERAKVCFE-------KALEK-KPKNPEFTSGLAIA---SYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHHHHHH--------CTTHHHHHHHHHH-------HHHHH-STTCHHHHHHHHHH---HHHHHHSCCCCCTHHHHHH
T ss_pred HHHHHHHHHH--------ccccHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH---HHHhcCchHHHHHHHHHHH
Confidence 5544444421 2457889999995 22221 11122223222222 0113456777888888877
Q ss_pred HHhcCCCCCc-cccchhhHhhccc---------cccCCCcchhcccCCCC-ChhhhHHHHHHHHHhhccHHHHHHHHHHH
Q 005628 310 KENLGQFSNG-HMKLNSQLLDGRS---------NLERGPDDQSRKKDWSI-DNQDADEIRLSEDAKKYAFQRGFEIYEKM 378 (687)
Q Consensus 310 M~~~g~~Pd~-~ty~~~~li~g~~---------~~a~~~~~~m~~~g~~p-d~~tyn~~lI~~~~k~g~~~~A~~lf~~M 378 (687)
-.+. .|+. ..+. .+...+. ..|...+..... ..| +...++. +-..|.+.|++++|.+.|++.
T Consensus 201 al~l--~p~~~~~~~--~l~~~~~~~~~~~~~~~~a~~~~~~al~--~~~~~~~~~~~-lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 201 AIRL--NPDNQYLKV--LLALKLHKMREEGEEEGEGEKLVEEALE--KAPGVTDVLRS-AAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHH--CSSCHHHHH--HHHHHHHHCC------CHHHHHHHHHHH--HCSSCHHHHHH-HHHHHHHTTCHHHHHHHHHHH
T ss_pred Hhhc--CCcchHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHHHH--hCccHHHHHHH-HHHHHHHcCchHHHHHHHHHH
Confidence 6654 3433 2222 1111111 122223333222 123 3334555 677788888888888888887
Q ss_pred HhCCCCCCHHHHHHHHHHHHH-------------------cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 379 CLDEVPMNEASLTAVGRMAMS-------------------MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 379 ~~~gi~pd~~tyn~LI~~~~~-------------------~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
.+.. +-+..+|..+-..|.. .+..++|...|+...... ..+..+|..+-..|...|+.+
T Consensus 274 l~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 274 LEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHH
T ss_pred HHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHH
Confidence 7643 2234555555444322 123456666776665542 235567777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEP--ELEALLR-VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~--ty~~Li~-~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.|+...+....|... .+..+-. .+...|+.++|+..|.+...-
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 8888888887754333221 1222221 234677888888888776654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=97.56 E-value=0.0014 Score=67.52 Aligned_cols=125 Identities=8% Similarity=-0.011 Sum_probs=99.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-----CcchHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV-PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-----RLRSYGPALSV 431 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi-~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-----d~~ty~~lI~~ 431 (687)
+-..+...|++++|++++.+-...|. .-+...+-.++..+.+.|+.+.|.++++.|.+. .| +-.+...|..+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHH
Confidence 66888999999999999999866554 235678889999999999999999999999875 46 35555666666
Q ss_pred HHh--CC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 432 FCN--NG--DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 432 ~~~--~g--~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.. .| +..+|+.+|+++.+. .|+..+-..|+.++.+.|++++|...++.+...
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332 34 899999999999765 366555566666899999999999999977653
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0032 Score=64.65 Aligned_cols=117 Identities=14% Similarity=0.112 Sum_probs=79.8
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCCc-chHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPRL-RSYGP 427 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd~-~ty~~ 427 (687)
+-..|.. |++++|.+.|++.... |-.+ -..+|+.+-..|.+.|++++|...|++.... +..+.. ..|..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 5556666 8999999888876542 1111 1467888889999999999999999987653 222222 25666
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHH
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPE------EPELEALLRVSVEAGKGDRVYYL 479 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd------~~ty~~Li~~~~~~g~~~~A~~l 479 (687)
+...+...|+.++|...|++.. . .|+ ......++.++ ..|+.+.+..+
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 6777778899999999999987 3 332 12345555555 56777666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0019 Score=55.09 Aligned_cols=98 Identities=16% Similarity=0.133 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
...|..+...+...|++++|.++|+++.... ..+..+|..+...+.+.|+.++|..+|+++.+.. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 5678889999999999999999999998763 2356788899999999999999999999998763 3467889999999
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|++++|...|+++...
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999876
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.0014 Score=65.37 Aligned_cols=160 Identities=10% Similarity=-0.020 Sum_probs=118.6
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+.. |+.... ...+.. +-..|.+.|++++|..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 73 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWA----------------------------ADAQFY-LARAYYQNKEYLLAAS 73 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcch----------------------------HHHHHH-HHHHHHHhCcHHHHHH
Confidence 678899999999999988753 332110 112222 5577889999999999
Q ss_pred HHHHHHhCCC-CCC-HHHHHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCc-chH-----------------
Q 005628 374 IYEKMCLDEV-PMN-EASLTAVGRMAMS--------MGDGDMAFDMVKRMKSLGINPRL-RSY----------------- 425 (687)
Q Consensus 374 lf~~M~~~gi-~pd-~~tyn~LI~~~~~--------~g~~~~A~~l~~~M~~~g~~Pd~-~ty----------------- 425 (687)
.|++..+... .|. ...+..+-.++.+ .|++++|...|++..... |+. ..+
T Consensus 74 ~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~ 151 (261)
T 3qky_A 74 EYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQ 151 (261)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHH
Confidence 9999987532 122 4567777778888 999999999999988752 443 333
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CChHHHHHHHHHHHhc
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEA----------GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~~----------g~~~~A~~ll~~M~~~ 486 (687)
-.+-..|.+.|+.++|...|+...+..-.. ....+..+..+|... |++++|...|++....
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 344667889999999999999998753211 245677777778765 8899999999999987
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0035 Score=56.76 Aligned_cols=125 Identities=11% Similarity=0.016 Sum_probs=95.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+...|++++|...|++..... +.+..+|..+...+...|++++|...+++..... ..+...|..+-..+...|+
T Consensus 19 ~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~ 96 (166)
T 1a17_A 19 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 96 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcc
Confidence 5567788899999999999887643 3367888888899999999999999999887653 2345678888888999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCChHHHHHHHHHHHh
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELE--ALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~--~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.++|.+.|++..+..- -+...+. .+...+.+.|++++|...+.....
T Consensus 97 ~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 97 FRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999998877532 2344443 333446778888888888876544
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.0025 Score=71.60 Aligned_cols=130 Identities=8% Similarity=-0.093 Sum_probs=110.5
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
.|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-..|...|++++|.+.+++..+.. .-+...|..+-..|
T Consensus 25 ~~~~-lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 25 AWLM-LADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 3444 6678889999999999999998754 3357889999999999999999999999988763 23457888899999
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHHHHhc
Q 005628 433 CNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEA---GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~---g~~~~A~~ll~~M~~~ 486 (687)
.+.|+.++|.+.|++..+.. .-+...+..+...+... |+.++|...+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99999999999999988763 23577888999999999 9999999999999887
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.39 E-value=0.01 Score=64.16 Aligned_cols=275 Identities=9% Similarity=-0.015 Sum_probs=167.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C--CCC-CHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQRE-----G--IKL-GQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVST 263 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-----G--i~p-d~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~ 263 (687)
..||.|=..+...|+.++|++.|++..+. + ..| ...+|+.+-..|. ..|+.++|...+.-.
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~----------~~g~~~~A~~~~~ka- 120 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY----------HMGRLSDVQIYVDKV- 120 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH----------HTTCHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH----------HcCChHHHHHHHHHH-
Confidence 78999989999999999999999987632 1 123 4678999988888 789999998887411
Q ss_pred cccccccccC-C---CCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhcc--c--ccc
Q 005628 264 MNSTELGDSR-D---MDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGR--S--NLE 335 (687)
Q Consensus 264 ~~s~em~~~~-g---~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~--~--~~a 335 (687)
.++.... + .....+|+.+-.+ ......+++++|...|++-.+. .|+...+.....+-.+ . ..+
T Consensus 121 ---~~i~~~~~~~~~~~~~~~~~~~g~~----~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~ 191 (472)
T 4g1t_A 121 ---KHVCEKFSSPYRIESPELDCEEGWT----RLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPS 191 (472)
T ss_dssp ---HHHHHHSCCSSCCCCHHHHHHHHHH----HHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCC
T ss_pred ---HHHhHhcccccchhhHHHHHHHHHH----HHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHH
Confidence 1121110 1 1111123222112 0022346789999999987765 4665433211111111 1 222
Q ss_pred CCCcchhcc-cCCCCCh-hhhHHHHHHH----HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Q 005628 336 RGPDDQSRK-KDWSIDN-QDADEIRLSE----DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDM 409 (687)
Q Consensus 336 ~~~~~~m~~-~g~~pd~-~tyn~~lI~~----~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l 409 (687)
...+..... ..+.|+. ..+.. +-.. +...++.++|.++|++..... +.+..++..+-..|.+.|++++|...
T Consensus 192 ~~al~~~~~al~l~p~~~~~~~~-l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 269 (472)
T 4g1t_A 192 QNAIDPLRQAIRLNPDNQYLKVL-LALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIEL 269 (472)
T ss_dssp CCTHHHHHHHHHHCSSCHHHHHH-HHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhcCCcchHHHHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHH
Confidence 222222111 1223433 33333 3222 334567889999999887653 34677899999999999999999999
Q ss_pred HHHHHHcCCCCCc-chHHHHHHHHHh-------------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 005628 410 VKRMKSLGINPRL-RSYGPALSVFCN-------------------NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE 469 (687)
Q Consensus 410 ~~~M~~~g~~Pd~-~ty~~lI~~~~~-------------------~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~ 469 (687)
+++..+. .|+. .+|..+-..|.. .+..+.|...|+...+.. ..+...|..+-..|..
T Consensus 270 ~~~al~~--~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 270 LKKALEY--IPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHH
T ss_pred HHHHHHh--CCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHH
Confidence 9998765 3543 344444333322 123566777777766543 2244567788889999
Q ss_pred cCChHHHHHHHHHHHhccCCCChh
Q 005628 470 AGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 470 ~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.|++++|...|++.... .+.+.
T Consensus 347 ~~~~~~A~~~~~kaL~~--~~~~~ 368 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSK--ELTPV 368 (472)
T ss_dssp TTCHHHHHHHHHHHHHS--CCCHH
T ss_pred hccHHHHHHHHHHHHhc--CCCCh
Confidence 99999999999998877 55554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0036 Score=72.62 Aligned_cols=131 Identities=11% Similarity=0.055 Sum_probs=112.8
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPAL 429 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI 429 (687)
...|+. |=..|.+.|++++|.+.|++..+.. +-+..+|+.|-..|.+.|++++|++.|++..+. .|+ ...|..+-
T Consensus 9 a~al~n-LG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 9 ADSLNN-LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 345677 7788999999999999999988753 225788999999999999999999999998765 354 57899999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 430 SVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|...|+.++|.+.|++..+.. .-+...|+.|-..|.+.|++++|+..|++..+.
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999988753 225788999999999999999999999998876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0048 Score=52.92 Aligned_cols=112 Identities=15% Similarity=0.101 Sum_probs=73.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+...|++++|.+.|++..... +.+...|..+...+...|++++|.+.++...... ..+...|..+-..|.+.|+
T Consensus 18 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 95 (131)
T 2vyi_A 18 EGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSSLNK 95 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHHhCC
Confidence 5566667777777877777776542 2356677777777777777777777777766542 2234566666667777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (687)
.++|...|+...+.. ..+...+..+...+.+.|+
T Consensus 96 ~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 96 HVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777766542 1245555666666655554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00073 Score=71.57 Aligned_cols=235 Identities=10% Similarity=-0.067 Sum_probs=159.0
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC---C-CHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GIK---L-GQYHYNV 231 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~--Gi~---p-d~~tyn~ 231 (687)
.....++.++|.+.|+.....- +..+..+ ...+|..+-..|...|+++.|+..|.+.... ... | ...+++.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKL--IFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHH--hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 3446789999999999975421 1111122 2467888889999999999999999998743 111 1 1345666
Q ss_pred HHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHH
Q 005628 232 LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 232 Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~e 309 (687)
+-..|. ..|+.++|...|.-. -++....+-. -..+|+.|-.. +...|++++|...|++
T Consensus 190 lg~~~~----------~~g~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~g~~~~A~~~~~~ 249 (383)
T 3ulq_A 190 FATNFL----------DLKQYEDAISHFQKA----YSMAEAEKQPQLMGRTLYNIGLC------KNSQSQYEDAIPYFKR 249 (383)
T ss_dssp HHHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHHHH----------HhcCHHHHHHHHHHH----HHHHHHcCChHHHHHHHHHHHHH------HHHCCCHHHHHHHHHH
Confidence 667777 789999999988511 1121111111 11346666666 8899999999999987
Q ss_pred HHhc----CCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----
Q 005628 310 KENL----GQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD---- 381 (687)
Q Consensus 310 M~~~----g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~---- 381 (687)
-.+. +-.|+. ..++.. +-..|.+.|++++|.+.|++....
T Consensus 250 al~~~~~~~~~~~~-------------------------------~~~~~~-l~~~~~~~g~~~~A~~~~~~al~~~~~~ 297 (383)
T 3ulq_A 250 AIAVFEESNILPSL-------------------------------PQAYFL-ITQIHYKLGKIDKAHEYHSKGMAYSQKA 297 (383)
T ss_dssp HHHHHHHTTCGGGH-------------------------------HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccchhH-------------------------------HHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 7652 111111 123444 778889999999999999987642
Q ss_pred CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 382 EVPMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 382 gi~pd~~tyn~LI~~~~~~g~---~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+-+.....++.|-..+...|+ +++|+.+++.. +..|+. ..+..+-..|...|+.++|.+.|+...+
T Consensus 298 ~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 298 GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112223346777778888888 77788777765 333433 4677788899999999999999998754
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0055 Score=59.63 Aligned_cols=158 Identities=10% Similarity=0.026 Sum_probs=111.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|+++.+.. |+.... ...+.. +-..|.+.|++++|.+
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~--p~~~~~----------------------------~~a~~~-lg~~~~~~~~~~~A~~ 62 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRY--PFGPYS----------------------------QQVQLD-LIYAYYKNADLPLAQA 62 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TTSTTH----------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCChHH----------------------------HHHHHH-HHHHHHhcCCHHHHHH
Confidence 667899999999999988752 322100 011222 6678889999999999
Q ss_pred HHHHHHhCCCC-CCH-HHHHHHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCcc-hH-------
Q 005628 374 IYEKMCLDEVP-MNE-ASLTAVGRMAMS------------------MGDGDMAFDMVKRMKSLGINPRLR-SY------- 425 (687)
Q Consensus 374 lf~~M~~~gi~-pd~-~tyn~LI~~~~~------------------~g~~~~A~~l~~~M~~~g~~Pd~~-ty------- 425 (687)
.|++..+.... +.. ..+-.+-..+.+ .|+.++|...|+.+.+. .|+.. .+
T Consensus 63 ~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~ 140 (225)
T 2yhc_A 63 AIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV 140 (225)
T ss_dssp HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH
T ss_pred HHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH
Confidence 99999875422 221 133333333333 57899999999998865 35543 22
Q ss_pred ----------HHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 426 ----------GPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 426 ----------~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-.+-..|.+.|+.++|...|+.+.+.- |+ ...+..+..+|.+.|+.++|...++.+...
T Consensus 141 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 141 FLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 123446788999999999999998753 43 246788899999999999999999998887
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0018 Score=60.38 Aligned_cols=154 Identities=6% Similarity=0.045 Sum_probs=104.2
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...+.. +-..|.+.|++++|..
T Consensus 16 ~~~~g~~~~A~~~~~~al~~--~P~~-------------------------------~~a~~~-la~~~~~~g~~~~A~~ 61 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLSDE--LQSR-------------------------------GDVKLA-KADCLLETKQFELAQE 61 (176)
T ss_dssp HHHTTCHHHHHHHHHTSCHH--HHTS-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH--CCCc-------------------------------HHHHHH-HHHHHHHCCCHHHHHH
Confidence 66778888888888765432 1221 222333 6677888899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~-~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|++..... |+...+..+... +...+...+|...|+...+. .|+ ...+..+-..+...|+.++|...|+++.+.
T Consensus 62 ~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 62 LLATIPLEY--QDNSYKSLIAKLELHQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 998876543 344433322211 12223334567777777654 354 577788888888999999999999988876
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 452 GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 452 gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.-.+ +...+..|...|...|+.++|...|++...
T Consensus 138 ~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 138 NLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp CTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred CcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 4332 356788888889999999999888887654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.01 Score=60.24 Aligned_cols=163 Identities=6% Similarity=-0.096 Sum_probs=118.2
Q ss_pred cccCCChhhHHHHHHHHHhcC-CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLG-QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g-~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
+...|++++|..++++..+.. ..|+...+ ...|.. +...+...+++++|.
T Consensus 85 ~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~----------------------------~~~~~~-l~~~~~~~~~~~~Ai 135 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNELKKEEYHPEFQQF----------------------------LQWQYY-VAAYVLKKVDYEYCI 135 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCCCCHHHHHH----------------------------HHHHHH-HHHHHTTSSCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHhccccCChHHHHH----------------------------HHHHHH-HHHHHHcccCHHHHH
Confidence 778899999999999877632 11111000 001222 556677788999999
Q ss_pred HHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCc-chHHHHHHHHHhCCChHHH
Q 005628 373 EIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRL-RSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 373 ~lf~~M~~~gi~-pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~-~ty~~lI~~~~~~g~~~~A 441 (687)
+.|++....... +| ..+|+.+-..|...|++++|...|++..+. +..+.. .+|..+-..|.+.|+.++|
T Consensus 136 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A 215 (293)
T 3u3w_A 136 LELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEES 215 (293)
T ss_dssp HHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999874222 33 347999999999999999999999988741 222222 4788899999999999999
Q ss_pred HHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCC-hHHHHHHHHHHHh
Q 005628 442 CSVEEHMLE----HGVYPE-EPELEALLRVSVEAGK-GDRVYYLLHKLRT 485 (687)
Q Consensus 442 ~~l~~~M~~----~gv~pd-~~ty~~Li~~~~~~g~-~~~A~~ll~~M~~ 485 (687)
.+.+++..+ .+..+. ...|..+-.+|.+.|+ .++|...+++...
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999987654 233333 6788888889999995 5999998887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0017 Score=66.24 Aligned_cols=164 Identities=7% Similarity=-0.089 Sum_probs=119.5
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
|...|++++|...|.+-...... .|-.++ ..+|+. +-..|.+.|++++|.
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~----------------------------~~~~~~~a~~~~~-lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKK----------------------------AGNEDEAGNTYVE-AYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH-HHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH----------------------------hCCHHHHHHHHHH-HHHHHHHCCCHHHHH
Confidence 77789999999998876542100 000011 235556 778889999999999
Q ss_pred HHHHHHHhC----CCCC-CHHHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCCCC-cchHHHHHHHHHhCCChHHH
Q 005628 373 EIYEKMCLD----EVPM-NEASLTAVGRMAMSM-GDGDMAFDMVKRMKSL----GINPR-LRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 373 ~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~-g~~~~A~~l~~~M~~~----g~~Pd-~~ty~~lI~~~~~~g~~~~A 441 (687)
..|++.... |-.. -..+|+.+-..|... |++++|+..|++.... +-.+. ..+|+.+-..|.+.|++++|
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 177 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999877642 2111 145788899999996 9999999999987653 11111 35688889999999999999
Q ss_pred HHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEHGVYPEE------PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~gv~pd~------~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|+...+....... ..|..+..++...|++++|...|++....
T Consensus 178 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999886433222 25677888899999999999999987664
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0038 Score=64.13 Aligned_cols=131 Identities=12% Similarity=0.049 Sum_probs=96.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-Cc
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RL 422 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~ 422 (687)
+|+. +-..|.+.|++++|.+.|++.... |-.. -..+|+.+-..|.. |++++|+..|++.... |-.+ -.
T Consensus 78 ~~~~-lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQ-AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHH-HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 4445 667788889999999888876532 2111 13577888888888 9999999999886643 1111 14
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYPEE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~pd~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+|+.+-..|.+.|++++|.+.|++..+. +..+.. ..|..+...+...|++++|...|++.. .
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~ 223 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S 223 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C
Confidence 67888889999999999999999988753 222222 266677777788899999999999988 5
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0054 Score=53.01 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=50.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+.+.|++++|.+.|++..... +.+...|..+...|...|++++|...+++..+.. ..+...|..+-..+.+.|+
T Consensus 22 ~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 22 KGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHHhh
Confidence 4455556666666666666655432 1245555555566666666666666666555431 1233445555555555566
Q ss_pred hHHHHHHHHHHHH
Q 005628 438 VDKACSVEEHMLE 450 (687)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (687)
+++|.+.|++..+
T Consensus 100 ~~~A~~~~~~~~~ 112 (133)
T 2lni_A 100 YTKAMDVYQKALD 112 (133)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666655555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.023 Score=55.15 Aligned_cols=88 Identities=13% Similarity=0.044 Sum_probs=66.6
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCH-HHH-----------------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNE-ASL-----------------TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~-~ty-----------------n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 422 (687)
.+...|+.++|...|++..+.. |+. ..+ -.+-..|.+.|++++|...|+.+.+. .|+.
T Consensus 105 ~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~ 180 (225)
T 2yhc_A 105 SDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDT 180 (225)
T ss_dssp ---CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTS
T ss_pred hhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCC
Confidence 3445788999999999998753 332 222 23445678899999999999998875 2543
Q ss_pred ----chHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 423 ----RSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 423 ----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 181 ~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 181 QATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred CccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 467888899999999999999999988764
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0036 Score=58.96 Aligned_cols=129 Identities=14% Similarity=-0.010 Sum_probs=96.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC--CcchHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCL----DEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP--RLRSYG 426 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~----~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P--d~~ty~ 426 (687)
+-..|...|++++|.+.|++... .+..| ...+++.+-..|...|++++|...+++.... +-.| ....+.
T Consensus 32 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 111 (203)
T 3gw4_A 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAY 111 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHH
Confidence 66778889999999999998775 22222 3467888888999999999999999886643 2111 235577
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH----GVY-PEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~----gv~-pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+-..+...|++++|...+++..+. +-. .-..++..+-..+...|++++|...+++....
T Consensus 112 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 112 EVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 7888899999999999999887643 211 11234677888889999999999999877654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.015 Score=55.18 Aligned_cols=121 Identities=7% Similarity=-0.088 Sum_probs=96.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++. +.|+ ...|.. +-..|.+.|++++|.+
T Consensus 16 ~~~~~~~~~A~~~~~~a----~~~~--------------------------------~~~~~~-lg~~~~~~g~~~~A~~ 58 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAV----QDPH--------------------------------SRICFN-IGCMYTILKNMTEAEK 58 (213)
T ss_dssp HHHTTCHHHHHHHHHTS----SSCC--------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHH----cCCC--------------------------------hHHHHH-HHHHHHHcCCHHHHHH
Confidence 66789999999988754 2232 234445 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC--------------CC-CcchHHHHHHHHHhCCCh
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI--------------NP-RLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~--------------~P-d~~ty~~lI~~~~~~g~~ 438 (687)
.|++..... +.+...|..+-..|...|++++|...|+......- .| ....|..+-..|.+.|+.
T Consensus 59 ~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 137 (213)
T 1hh8_A 59 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 137 (213)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCH
Confidence 999988754 34678899999999999999999999999887521 11 126788888899999999
Q ss_pred HHHHHHHHHHHHCC
Q 005628 439 DKACSVEEHMLEHG 452 (687)
Q Consensus 439 ~~A~~l~~~M~~~g 452 (687)
++|.+.|+...+..
T Consensus 138 ~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 138 KKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHcC
Confidence 99999999998753
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.011 Score=59.89 Aligned_cols=163 Identities=6% Similarity=-0.073 Sum_probs=116.6
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...+.+..+..-..+ .... ....+.. +...+...|++++|.+
T Consensus 85 ~~~~~~y~~A~~~~~~~l~~~~~~~-~~~~--------------------------~~~~~~~-~~~~~~~~~~~~~A~~ 136 (293)
T 2qfc_A 85 LCKQKRYKEIYNKVWNELKKEEYHP-EFQQ--------------------------FLQWQYY-VAAYVLKKVDYEYCIL 136 (293)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCCCH-HHHH--------------------------HHHHHHH-HHHHHHTSSCHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHhccccCCh-hHHH--------------------------HHHHHHH-HHHHHhcCCCHHHHHH
Confidence 7788999999999987766421110 0000 0011222 4456778899999999
Q ss_pred HHHHHHhCCC---CCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCC-----cchHHHHHHHHHhCCChHHHH
Q 005628 374 IYEKMCLDEV---PMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-GINPR-----LRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 374 lf~~M~~~gi---~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd-----~~ty~~lI~~~~~~g~~~~A~ 442 (687)
.|++...... .+. ..+|+.+-..|...|++++|...|++.... ...|+ ..+|..+-..|.+.|+.++|.
T Consensus 137 ~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al 216 (293)
T 2qfc_A 137 ELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHH
Confidence 9998875321 222 458999999999999999999999987632 11122 258888999999999999999
Q ss_pred HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 005628 443 SVEEHMLEH----GVYPE-EPELEALLRVSVEAGKGDRV-YYLLHKLR 484 (687)
Q Consensus 443 ~l~~~M~~~----gv~pd-~~ty~~Li~~~~~~g~~~~A-~~ll~~M~ 484 (687)
+.+++..+. +.... ..+|..+-..|.+.|+.++| ...+++-.
T Consensus 217 ~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 999987643 22222 67788889999999999999 77677644
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0047 Score=57.23 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=95.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHH-HHhCCCh--
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSV-FCNNGDV-- 438 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~-~~~~g~~-- 438 (687)
+...|++++|.+.|++..... +.+...|..+-..|...|++++|...|+...... ..+...|..+-.. +...|+.
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence 446678888999998877653 3467889999999999999999999999987652 1245566666667 7789998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++|...|+...+.. .-+...|..+-..|...|++++|...|++....
T Consensus 98 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 98 AQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 99999999998763 235778888889999999999999999998887
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0075 Score=62.94 Aligned_cols=131 Identities=11% Similarity=-0.025 Sum_probs=105.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
.|.. +-..|.+.|++++|.+.|++......... ...|..+-.+|.+.|++++|+..++...+..
T Consensus 149 ~~~~-~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 149 IVKE-RGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHH-HHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHH-HHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3444 66788899999999999999887542221 5899999999999999999999999988763
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH-HHHHHHHHhc
Q 005628 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV-YYLLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A-~~ll~~M~~~ 486 (687)
..+...|..+-.+|...|++++|...|+...+.. .-+...+..|-..+.+.|+.++| ..++..|...
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356788888899999999999999999988753 23567888888899999999988 4566666554
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.01 Score=57.05 Aligned_cols=174 Identities=13% Similarity=0.079 Sum_probs=114.1
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|++..+. .|+....- ...+... ........++. +-..|.+.|++++|..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~---~~~~~~~------------~~~~~~~~~~~-lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIAL--NIDRTEMY---YWTNVDK------------NSEISSKLATE-LALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHHHH---HHHHSCT------------TSHHHHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHh--CCCChHHH---HHhhhcc------------hhhhhHHHHHH-HHHHHHHCCCHHHHHH
Confidence 56789999999999988765 24322110 0001000 00001111222 5567889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCC--hHHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD--VDKACSVEEHMLE 450 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~--~~~A~~l~~~M~~ 450 (687)
.|++..+.. +-+...|..+-..|...|++++|...|++..+. .|+ ...|..+-..|...|+ .+.+...++..
T Consensus 76 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~-- 150 (208)
T 3urz_A 76 FYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKL-- 150 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--
Confidence 999998754 236789999999999999999999999998875 354 5667777777766554 33445555544
Q ss_pred CCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHhccCCCChhH
Q 005628 451 HGVYPEEPEL--EALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPST 494 (687)
Q Consensus 451 ~gv~pd~~ty--~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t 494 (687)
+.|+...| ..+-.++...|++++|...|++.... .|++..
T Consensus 151 --~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 151 --SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred --hCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 34554433 33344456688999999999999887 555443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.013 Score=50.12 Aligned_cols=96 Identities=17% Similarity=0.161 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----HHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV--YPE----EPELEAL 463 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv--~pd----~~ty~~L 463 (687)
|..+...+...|++++|...|+...... ..+...|..+...|...|++++|...++...+..- .++ ...|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4444444444555555555555444331 12333444444445555555555555554443211 111 4445555
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..|.+.|++++|...|++....
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555666666666666655554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0031 Score=64.27 Aligned_cols=122 Identities=7% Similarity=0.010 Sum_probs=56.6
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHH-HHHHhCCChH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPAL-SVFCNNGDVD 439 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI-~~~~~~g~~~ 439 (687)
.+...|++++|...|++..... +-+...+..|...+.+.|++++|..+++..... .|+........ ..+...++.+
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l~~~~~~~ 202 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIELLXQAADT 202 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHHHHHHTSC
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHHHhhcccC
Confidence 3445555555555555554432 113444555555555555555555555544332 23322111111 1133444455
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.++...+.. +.+...+..|-..|...|++++|...|.+....
T Consensus 203 ~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 203 PEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 5555555544432 123444555555555555555555555555554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0051 Score=52.87 Aligned_cols=109 Identities=15% Similarity=0.174 Sum_probs=87.2
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC----cchHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG--INPR----LRSYGP 427 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g--~~Pd----~~ty~~ 427 (687)
|.. +-..+...|++++|...|++..... +.+...|..+...|...|++++|...++...... ..++ ..+|..
T Consensus 7 ~~~-l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKE-LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHH-HHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444 6678889999999999999988754 3467889999999999999999999999987652 1122 667888
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
+-..+.+.|++++|.+.|+...+. .|+...+..+-..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 889999999999999999999885 3566555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0044 Score=51.69 Aligned_cols=93 Identities=10% Similarity=0.009 Sum_probs=41.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHh
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVE 469 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~ 469 (687)
.+...+...|++++|...|+...+.. ..+...|..+-..+...|++++|.+.|+...+.. .. +...|..+-..|.+
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~~ 88 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALRY 88 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHHH
Confidence 33334444444444444444443321 1123334444444445555555555555444431 11 24445555555555
Q ss_pred c-CChHHHHHHHHHHHhc
Q 005628 470 A-GKGDRVYYLLHKLRTS 486 (687)
Q Consensus 470 ~-g~~~~A~~ll~~M~~~ 486 (687)
. |++++|.+.|++....
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 89 IEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp CSSCSHHHHHHHHHHGGG
T ss_pred HhCCHHHHHHHHHHHhhc
Confidence 5 5555555555555544
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.018 Score=48.25 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
..|..+...+...|++++|...|+...... +.+...|..+...+...|+.++|...++...+.. ..+...|..+...|
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345555555556666666666666555431 1234455555555666666666666666655532 12455556666666
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 005628 468 VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~ 486 (687)
...|++++|...+++....
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 6666666666666665554
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0092 Score=51.52 Aligned_cols=101 Identities=9% Similarity=-0.037 Sum_probs=86.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEAL 463 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~L 463 (687)
+.+...|..+...+...|++++|...|++..... ..+...|..+-..|...|+.++|.+.+++..+.. ..+...|..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 4567788999999999999999999999987652 2356788888889999999999999999988753 3367888999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-..|.+.|++++|...|++....
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHh
Confidence 99999999999999999998876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0028 Score=66.97 Aligned_cols=234 Identities=9% Similarity=-0.090 Sum_probs=156.0
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCC-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC---CC-CHHHHHHH
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRS-EQFQLRVELDMCSKRGDVMGAIRLYDKAQRE--GI---KL-GQYHYNVL 232 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P-~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~--Gi---~p-d~~tyn~L 232 (687)
....++.++|.+.|+...... +..+..| ...+|..+-..|...|+++.|+..+.+.... .. .+ ...+++.+
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKEL--PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTG--GGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHH--hhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 346789999999999875421 1111112 2357888888999999999999999998743 11 11 13456666
Q ss_pred HHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC--CccchhccccccccccccccCCChhhHHHHHHHH
Q 005628 233 LYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEK 310 (687)
Q Consensus 233 l~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM 310 (687)
=..|. ..|+.++|...|.-. -++....+-. -..+|+.|=.. +...|++++|...|.+-
T Consensus 189 g~~y~----------~~~~~~~A~~~~~~a----l~~~~~~~~~~~~~~~~~~lg~~------y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 189 AGNYD----------DFKHYDKALPHLEAA----LELAMDIQNDRFIAISLLNIANS------YDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCHHHHHHHHHHHHHH------HHHHTCHHHHHHHHHHH
T ss_pred HHHHH----------HhCCHHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHH------HHHCCCHHHHHHHHHHH
Confidence 66677 789999999988511 1111111111 12335666666 88899999999999876
Q ss_pred HhcC---CCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CC
Q 005628 311 ENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EV 383 (687)
Q Consensus 311 ~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi 383 (687)
.... -.|+ ...++.. +-..|.+.|++++|.+.|++..+. +-
T Consensus 249 l~~~~~~~~~~-------------------------------~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 296 (378)
T 3q15_A 249 AKVSREKVPDL-------------------------------LPKVLFG-LSWTLCKAGQTQKAFQFIEEGLDHITARSH 296 (378)
T ss_dssp HHHHHHHCGGG-------------------------------HHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHhhCChh-------------------------------HHHHHHH-HHHHHHHCCCHHHHHHHHHHHHHHHHHcCC
Confidence 6520 0111 1123344 678899999999999999988763 22
Q ss_pred CCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 384 PMNEASLTAVGRMAMSMGD---GDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~---~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+.....++.+-..+...++ +++|+..++. .+..|+. ..+..+-..|...|+.++|.+.|+...+
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2234556666667777788 7777777775 3333333 4566778889999999999999988753
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.025 Score=48.25 Aligned_cols=99 Identities=10% Similarity=0.010 Sum_probs=85.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLR 465 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~ 465 (687)
+...|..+...+...|++++|...|+...... ..+...|..+...+...|+.++|.+.++...+.. ..+...|..+-.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45678888889999999999999999988753 2356788888899999999999999999988753 335788889999
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 005628 466 VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|.+.|++++|...|++....
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999998877
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=96.87 E-value=0.011 Score=59.92 Aligned_cols=129 Identities=9% Similarity=0.004 Sum_probs=98.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCc----chHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDE-VPMNE----ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRL----RSYGP 427 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~g-i~pd~----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~----~ty~~ 427 (687)
.+..+...|++++|.+++++..... ..|+. ..|..+...+...|++++|...|++....... ++. .+|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3678889999999999999988743 22332 23445666677778999999999998874322 232 36899
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEH-----GVYPE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~-----gv~pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+-..|...|+.++|...|+...+. +..+. ..+|..+-..|.+.|++++|...+++....
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999999999999999999998741 22222 237888999999999999999999877643
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.014 Score=48.50 Aligned_cols=95 Identities=9% Similarity=0.008 Sum_probs=80.7
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CcchHHHHHH
Q 005628 354 ADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP---RLRSYGPALS 430 (687)
Q Consensus 354 yn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P---d~~ty~~lI~ 430 (687)
|.. +-..+.+.|++++|...|++..+.. +.+...|..+-..+...|++++|...|++..+.. | +...|..+-.
T Consensus 9 ~~~-~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 9 YYL-EGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKAD 84 (112)
T ss_dssp GGG-HHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHH
T ss_pred HHH-HHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHH
Confidence 344 6677889999999999999988753 3467889999999999999999999999988763 4 4678888889
Q ss_pred HHHhC-CChHHHHHHHHHHHHCC
Q 005628 431 VFCNN-GDVDKACSVEEHMLEHG 452 (687)
Q Consensus 431 ~~~~~-g~~~~A~~l~~~M~~~g 452 (687)
.+.+. |+.++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 99999 99999999999988754
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.069 Score=53.92 Aligned_cols=96 Identities=5% Similarity=-0.069 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCC-C
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCL---D-EVPM--NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG----INP-R 421 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~---~-gi~p--d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g----~~P-d 421 (687)
+|+. +-..|...|++++|.+.|++..+ . +-.+ ...+|+.+-..|.+.|++++|...+++..... ... -
T Consensus 157 ~~~~-lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENA-IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4555 77888999999999999998862 1 1111 12688999999999999999999999866431 111 1
Q ss_pred cchHHHHHHHHHhCCChHHH-HHHHHHHH
Q 005628 422 LRSYGPALSVFCNNGDVDKA-CSVEEHML 449 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A-~~l~~~M~ 449 (687)
..+|..+-..|.+.|+.++| ...++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 46788888899999999999 77677653
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.022 Score=49.69 Aligned_cols=100 Identities=12% Similarity=-0.058 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
.+...|..+-..+...|++++|...|+...... ..+...|..+-..+...|++++|...++...+.. .-+...|..+-
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 356667777777777777777777777766542 1234566777777777777777777777776643 22566777777
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 005628 465 RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|...|++++|...|++....
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 7777888888888877776654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.039 Score=54.47 Aligned_cols=124 Identities=10% Similarity=0.005 Sum_probs=98.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN---EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd---~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~ 430 (687)
+-..+.+.|++++|.+.|+++...... + ...+..+-..|.+.|++++|...|+...... |+ ...|..+-.
T Consensus 21 ~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 21 RAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY--QIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--CCCchhHHHHHHHHH
Confidence 456778999999999999999875421 2 5778888899999999999999999988752 32 244566666
Q ss_pred HHHh--------CCChHHHHHHHHHHHHCCCCCC-HHHH-----------------HHHHHHHHhcCChHHHHHHHHHHH
Q 005628 431 VFCN--------NGDVDKACSVEEHMLEHGVYPE-EPEL-----------------EALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 431 ~~~~--------~g~~~~A~~l~~~M~~~gv~pd-~~ty-----------------~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
++.+ .|+.++|...|++..+.. |+ ...+ -.+-..|.+.|++++|...|++..
T Consensus 98 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 175 (261)
T 3qky_A 98 CYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVF 175 (261)
T ss_dssp HHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777 999999999999998753 32 2222 345677889999999999999998
Q ss_pred hc
Q 005628 485 TS 486 (687)
Q Consensus 485 ~~ 486 (687)
..
T Consensus 176 ~~ 177 (261)
T 3qky_A 176 DA 177 (261)
T ss_dssp HH
T ss_pred HH
Confidence 87
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0073 Score=54.84 Aligned_cols=133 Identities=10% Similarity=0.022 Sum_probs=100.2
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
.+...|++++|++.|...... .| +...+-.|-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|+++
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 345678999999999887653 23 23456678889999999999999999988753 225678888999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhccCCC-ChhHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKLRTSVRKV-SPSTADVIAK 500 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~-ll~~M~~~~~g~-~p~t~~~I~~ 500 (687)
+|...|+...+. .| +...|..|-..|.+.|+.++|.+ ++++..+. .| .|..|.....
T Consensus 83 ~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ 142 (150)
T 4ga2_A 83 KAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQ 142 (150)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHH
Confidence 999999999875 34 57788899999999999987665 45766654 22 2335555433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.061 Score=54.45 Aligned_cols=164 Identities=9% Similarity=-0.017 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGD 271 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~ 271 (687)
..+..+-..+.+.|++++|+.+|++..... +-+...+..|-..+. ..|+.++|...+. +...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~----------~~g~~~~A~~~l~-------~~~~ 179 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLI----------ALNRSEDAEAVLX-------TIPL 179 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHH----------HTTCHHHHHHHHT-------TSCG
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHH----------HCCCHHHHHHHHH-------hCch
Confidence 556667778889999999999999998652 224556666666666 6677777777774 1111
Q ss_pred cCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCCh
Q 005628 272 SRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDN 351 (687)
Q Consensus 272 ~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~ 351 (687)
. .|+..
T Consensus 180 ~-------------------------------------------~p~~~------------------------------- 185 (287)
T 3qou_A 180 Q-------------------------------------------DQDTR------------------------------- 185 (287)
T ss_dssp G-------------------------------------------GCSHH-------------------------------
T ss_pred h-------------------------------------------hcchH-------------------------------
Confidence 0 11111
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCcchHHHHHH
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PRLRSYGPALS 430 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd~~ty~~lI~ 430 (687)
.........+...++.++|.+.|++..... +.+...+..+-..|...|++++|...|.+..+..-. .+...+..|..
T Consensus 186 -~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 186 -YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE 263 (287)
T ss_dssp -HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence 001112223455666777888888777653 346778888888888899999999988888775311 12567888888
Q ss_pred HHHhCCChHHHHHHHHHHH
Q 005628 431 VFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~ 449 (687)
.|...|+.++|...|++-.
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 8888888888877776643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.022 Score=63.77 Aligned_cols=118 Identities=12% Similarity=0.026 Sum_probs=86.5
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~ 443 (687)
.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+. .| +...|..+-..|...|+.++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 367889999999887643 235788999999999999999999999998765 34 46788888899999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 444 VEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 444 l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|++..+.. .-+...|..+-..|.+.|++++|...|++..+.
T Consensus 79 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 79 LLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999988763 235788999999999999999999999998887
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.069 Score=61.22 Aligned_cols=139 Identities=9% Similarity=-0.022 Sum_probs=103.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD-E-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~-g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
.+...-+.|.++.|..+|....+. + ..+......+.|.-.+ .++.+.|..+|+...+. +.-+..-+...+......
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~ 517 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYV 517 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhC
Confidence 556666788999999999999876 3 3344444444444322 35699999999988876 323444556888888889
Q ss_pred CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHHH
Q 005628 436 GDVDKACSVEEHMLEHGVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIAK 500 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~p--d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~~ 500 (687)
|+.+.|..+|+........+ ....|...++.-.+.|+.+.+..+..+|... .+..+...++..
T Consensus 518 ~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 518 NEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp TCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 99999999999988764322 3568999999999999999999999999998 555555544333
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.73 E-value=0.043 Score=48.20 Aligned_cols=90 Identities=10% Similarity=-0.019 Sum_probs=44.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
+-..+...|++++|.+.|++..+. .|+ ...|..+...|...|++++|...++...... ..+...|..+-..|.
T Consensus 34 ~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 110 (148)
T 2dba_A 34 EGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRRSQALE 110 (148)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHHHHHHH
Confidence 445555556666666666655543 233 3445555555555555555555555544431 112334444444445
Q ss_pred hCCChHHHHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHMLE 450 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~ 450 (687)
..|+.++|...|++..+
T Consensus 111 ~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.041 Score=45.93 Aligned_cols=97 Identities=13% Similarity=0.101 Sum_probs=81.1
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
.+.. +...+...|++++|.+.|++..... +.+...|..+...+...|++++|...+++..... ..+...|..+...+
T Consensus 6 ~~~~-~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKE-KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 3444 6678889999999999999988753 3367889999999999999999999999988763 23567788888999
Q ss_pred HhCCChHHHHHHHHHHHHCC
Q 005628 433 CNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~g 452 (687)
...|+.++|.+.++...+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.027 Score=51.47 Aligned_cols=89 Identities=11% Similarity=-0.012 Sum_probs=42.8
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+.+.|++++|...|++..... +-+...|..+-.+|...|++++|...|++..... +-+...|..+-.+|.+.|+.+
T Consensus 44 ~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~~lg~~~ 121 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQLRLKAPL 121 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHH
Confidence 44445555555555555554432 1234445555555555555555555555544431 112344444444555555555
Q ss_pred HHHHHHHHHHH
Q 005628 440 KACSVEEHMLE 450 (687)
Q Consensus 440 ~A~~l~~~M~~ 450 (687)
+|.+.|+...+
T Consensus 122 eA~~~~~~al~ 132 (151)
T 3gyz_A 122 KAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555444
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0071 Score=53.86 Aligned_cols=133 Identities=14% Similarity=-0.005 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-Cc
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVP-MN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RL 422 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~-pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~ 422 (687)
++.. +-..|...|++++|.+.|++....... ++ ..++..+-..+...|++++|.+.+++.... +-.+ ..
T Consensus 11 ~~~~-l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGN-LGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 3444 567788899999999999887653111 12 247888888999999999999999987643 1111 14
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..|..+-..+...|+.++|.+.+++..+. +-.+ ....+..+-..|...|++++|...+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 56777888889999999999999887643 2111 2456777888889999999999999876653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.019 Score=52.41 Aligned_cols=103 Identities=4% Similarity=-0.104 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
...+..+-..+.+.|++++|...|+...... +-+...|..+-.+|...|++++|.+.|+...+..- -+...|..+-.+
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~ 113 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHH
Confidence 3467777788999999999999999988763 23567788888999999999999999999987542 256788889999
Q ss_pred HHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 467 SVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|.+.|++++|...|++.... .+.+.
T Consensus 114 ~~~lg~~~eA~~~~~~al~l--~~~~~ 138 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQH--SNDEK 138 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence 99999999999999999988 55544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.017 Score=50.75 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=50.8
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..|.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|+..|+...+.. +.+...|..+-.+|...|+++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 98 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWS 98 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHH
Confidence 45556666666666666655432 2345566666666666666666666666655432 123345555555566666666
Q ss_pred HHHHHHHHHHH
Q 005628 440 KACSVEEHMLE 450 (687)
Q Consensus 440 ~A~~l~~~M~~ 450 (687)
+|.+.|+...+
T Consensus 99 ~A~~~~~~al~ 109 (126)
T 4gco_A 99 KAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666665554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0095 Score=55.09 Aligned_cols=123 Identities=7% Similarity=-0.008 Sum_probs=91.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|++++|...|.+..... |+. ...|.. +-..|...|++++|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~--p~~-------------------------------~~~~~~-lg~~~~~~~~~~~A~~ 65 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN--PQN-------------------------------SEQWAL-LGEYYLWQNDYSNSLL 65 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC--CSC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC--CCc-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 677888999998888776542 221 223334 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHH-HHHcCCh--HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRM-AMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~-~~~~g~~--~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|++..... +.+...|..+... +...|++ ++|...|+...... .-+...|..+-..|...|+.++|...|+...+
T Consensus 66 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 66 AYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 999988753 2367788888888 7789998 99999999988763 22456788888899999999999999999887
Q ss_pred CC
Q 005628 451 HG 452 (687)
Q Consensus 451 ~g 452 (687)
..
T Consensus 144 ~~ 145 (177)
T 2e2e_A 144 LN 145 (177)
T ss_dssp TC
T ss_pred hC
Confidence 53
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.053 Score=48.69 Aligned_cols=97 Identities=10% Similarity=-0.025 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
..|..+-..+...|++++|...|+...... ..+...|..+...+...|++++|.+.++...+.. ..+...|..+-..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 457777788899999999999999987752 2356788888899999999999999999988763 34677888999999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 005628 468 VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~ 486 (687)
...|++++|...|++....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999999887
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.016 Score=66.73 Aligned_cols=124 Identities=10% Similarity=-0.032 Sum_probs=105.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g 436 (687)
+-..|...|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|.+.|++..+.. | +...|..+-..|.+.|
T Consensus 439 ~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g 515 (681)
T 2pzi_A 439 EVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAG 515 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcC
Confidence 5677889999999999999998753 2367889999999999999999999999987753 4 5677888888999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
++++ .+.|+...+.. .-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 516 ~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 563 (681)
T 2pzi_A 516 NTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPPT 563 (681)
T ss_dssp CCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT
T ss_pred ChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhccc
Confidence 9999 99999988753 235678899999999999999999999987665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.033 Score=48.54 Aligned_cols=98 Identities=11% Similarity=0.033 Sum_probs=81.8
Q ss_pred hhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 351 NQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 351 ~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
...|.. +-..+.+.|++++|...|++..... +.+...|..+-..+...|++++|...++...... +-+...|..+-.
T Consensus 9 ~~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 85 (137)
T 3q49_B 9 AQELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 85 (137)
T ss_dssp HHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence 444555 6678889999999999999988754 3467889999999999999999999999988763 235678888889
Q ss_pred HHHhCCChHHHHHHHHHHHHC
Q 005628 431 VFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|...|++++|...|+...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999988653
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.027 Score=51.40 Aligned_cols=98 Identities=13% Similarity=0.042 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRV 466 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~ 466 (687)
...|..+-..+.+.|++++|...|++..... .-+...|..+-..|.+.|++++|...|+...+.. .-+...|..+-..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777766542 1245566667777777777777777777776653 2246677777777
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|...|++++|...|++....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHh
Confidence 77888888888887777665
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.028 Score=50.09 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=41.2
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..+.+.|++++|...|++..... +.+...|..+-..|.+.|++++|...|+...... +-+...|..+-.+|...|+.+
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 103 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLGDLD 103 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHH
Confidence 34445555555555555544432 1234444455555555555555555555544431 112233444444445555555
Q ss_pred HHHHHHHHHH
Q 005628 440 KACSVEEHML 449 (687)
Q Consensus 440 ~A~~l~~~M~ 449 (687)
+|.+.|+...
T Consensus 104 ~A~~~~~~al 113 (142)
T 2xcb_A 104 GAESGFYSAR 113 (142)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.068 Score=46.75 Aligned_cols=96 Identities=7% Similarity=-0.076 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
.|..+=..|.+.|++++|++.|++..+.. +-+...|..+-.+|.+.|++++|.+.|+...+.. ..+...|..+-.+|.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45556667889999999999999987653 2356788889999999999999999999988753 235778999999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|++++|...|++..+.
T Consensus 93 ~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 999999999999998876
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0085 Score=54.38 Aligned_cols=110 Identities=12% Similarity=0.057 Sum_probs=86.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (687)
+=..|.+.|++++|.+.|++..+.. +-+..+|..+-..|.+.|++++|...|+...+. .|+ ...|..+-..|.+.|
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~ 113 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKND 113 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 5578899999999999999988753 236789999999999999999999999998875 354 567888888999999
Q ss_pred ChHHHHHH-HHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 005628 437 DVDKACSV-EEHMLEHGVYP-EEPELEALLRVSVEAGK 472 (687)
Q Consensus 437 ~~~~A~~l-~~~M~~~gv~p-d~~ty~~Li~~~~~~g~ 472 (687)
+.++|.+. ++...+. .| +...|...-..+...|+
T Consensus 114 ~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 114 VTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp SSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred ChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence 99876665 4766653 34 45666665555555553
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.029 Score=50.74 Aligned_cols=96 Identities=11% Similarity=-0.082 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
.+..+-..+.+.|++++|...|+...... +.+...|..+-.+|...|++++|...|+...+.. +-+...|..+-.+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 33444444555555555555555544331 1133344444445555555555555555554432 113344444555555
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|++++|...|++....
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.022 Score=57.73 Aligned_cols=126 Identities=11% Similarity=-0.097 Sum_probs=96.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--cchHHHHHHHHHhC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--LRSYGPALSVFCNN 435 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--~~ty~~lI~~~~~~ 435 (687)
....+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...... .|. ...+..+=.++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 4567888999999999999998754 554455666668899999999999998443321 111 23556666788999
Q ss_pred CChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|++++|+..|++.......|. ......+-.++.+.|+.++|..+|+++...
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999999999999885544365 234556666778999999999999999998
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.27 Score=46.96 Aligned_cols=86 Identities=15% Similarity=0.004 Sum_probs=59.0
Q ss_pred hccHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC-C--
Q 005628 365 KYAFQRGFEIYEKMCLDEVP-MNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN-G-- 436 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~-pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~-g-- 436 (687)
.+++++|.+.|++..+.|.. -+...+..|-..|.. .++.++|+..|+.-.+. ..+...+..|-..|... |
T Consensus 102 ~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~ 179 (212)
T 3rjv_A 102 ATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGF 179 (212)
T ss_dssp SCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTT
T ss_pred ccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCC
Confidence 66888899988888876532 125677777777777 77888888888887765 12344555555555543 2
Q ss_pred ---ChHHHHHHHHHHHHCC
Q 005628 437 ---DVDKACSVEEHMLEHG 452 (687)
Q Consensus 437 ---~~~~A~~l~~~M~~~g 452 (687)
+.++|.+.|+...+.|
T Consensus 180 ~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 180 IEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp BCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC
Confidence 7788888887776665
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.061 Score=47.19 Aligned_cols=99 Identities=15% Similarity=0.060 Sum_probs=86.2
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPEL 460 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty 460 (687)
.+...+..+...+...|++++|...|++..+. .|+ ...|..+-..|...|++++|.+.++...+.. ..+...|
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 46778888899999999999999999998765 466 6788888899999999999999999988753 2367788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 461 EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 461 ~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+-.+|...|++++|...|++....
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88999999999999999999999877
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.50 E-value=0.043 Score=48.02 Aligned_cols=55 Identities=11% Similarity=0.069 Sum_probs=29.7
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMK 414 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~ 414 (687)
=..|.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|++.++...
T Consensus 15 G~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 15 GNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 344555566666666666555432 1234555555555555666666655555544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.04 Score=47.53 Aligned_cols=96 Identities=11% Similarity=0.009 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
.|..+-..+.+.|++++|...|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. .-+...|..+-.+|.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444455556666666666666555432 1234555555566666666666666666655532 123455566666666
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
..|++++|...|++....
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 666666666666665554
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.059 Score=49.81 Aligned_cols=79 Identities=10% Similarity=0.092 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 370 RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 370 ~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
+|...|++..+.. +-+...+..+-..+...|++++|...|++..+..-.+ +...+..+...|...|+.++|...|+..
T Consensus 92 ~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 92 PELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred hHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 4677777766542 2257888888889999999999999999887653211 2457888888899999999999888876
Q ss_pred H
Q 005628 449 L 449 (687)
Q Consensus 449 ~ 449 (687)
.
T Consensus 171 l 171 (176)
T 2r5s_A 171 L 171 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=96.43 E-value=0.035 Score=49.43 Aligned_cols=97 Identities=14% Similarity=-0.045 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVS 467 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~ 467 (687)
..+..+-..+.+.|++++|...|+...... +.+...|..+-..|.+.|++++|...|+...+.. +-+...|..+-.+|
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHH
Confidence 455666778889999999999999988753 2355677788888999999999999999998764 23566788888999
Q ss_pred HhcCChHHHHHHHHHHHhc
Q 005628 468 VEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 468 ~~~g~~~~A~~ll~~M~~~ 486 (687)
...|++++|...|++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998776
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.042 Score=51.86 Aligned_cols=118 Identities=8% Similarity=-0.114 Sum_probs=73.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCC-C---C-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVP-M---N-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~-p---d-----------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 422 (687)
+-..+.+.|++++|.+.|++....... | . ...|..+-.+|.+.|++++|+..++...... ..+.
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~ 122 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNV 122 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccH
Confidence 445667778888888888877763211 1 1 2566777777777777777777777766542 2244
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (687)
..|..+-.+|...|++++|.+.|+...+.. .-+...+..+-..+...++.+++.
T Consensus 123 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 123 KALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 566666677777777777777777766542 124455555555555555444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.096 Score=44.92 Aligned_cols=89 Identities=16% Similarity=0.038 Sum_probs=54.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCcc----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC----HHHHHHHHH
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLGINPRLR----SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE----EPELEALLR 465 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd----~~ty~~Li~ 465 (687)
-..+...|++++|...|+...... |+.. .+..+-..+.+.|++++|...|+...+.. |+ ...+..+-.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 344556666666666666665532 3322 45555566666777777777777666542 22 445566666
Q ss_pred HHHhcCChHHHHHHHHHHHhc
Q 005628 466 VSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 466 ~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+|.+.|++++|...|++....
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 677777777777777777665
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.036 Score=50.08 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=82.6
Q ss_pred CCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHH
Q 005628 348 SIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYG 426 (687)
Q Consensus 348 ~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~ 426 (687)
.|+. ..+.. +-..+.+.|++++|...|++..... +.+...|..+-.+|...|++++|...|+...... +-+...|.
T Consensus 17 ~p~~~~~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~ 93 (148)
T 2vgx_A 17 SSDTLEQLYS-LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPF 93 (148)
T ss_dssp CHHHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHH
T ss_pred CHhhHHHHHH-HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHH
Confidence 3443 34444 6678889999999999999988753 3478889999999999999999999999988753 23567788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.+-.+|...|+.++|.+.|+...+.
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8888999999999999999988764
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.13 Score=48.97 Aligned_cols=132 Identities=11% Similarity=0.004 Sum_probs=86.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+.. |+. ...|.. +-..|...|++++|.+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~--p~~-------------------------------~~~~~~-lg~~~~~~g~~~~A~~ 109 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA--PNN-------------------------------VDCLEA-CAEMQVCRGQEKDALR 109 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TTC-------------------------------HHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCC-------------------------------HHHHHH-HHHHHHHcCCHHHHHH
Confidence 677889999999988877642 332 223334 6678889999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDG--DMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~--~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|++..+.. +-+..+|..+-..|...|+. ..+...++... ...|....+..+-.++...|+.++|...|+...+
T Consensus 110 ~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~- 185 (208)
T 3urz_A 110 MYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS--SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL- 185 (208)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH-
Confidence 999998753 23577888888887666543 34555555432 1222222233333345567899999999999876
Q ss_pred CCCCCHHHHHHHH
Q 005628 452 GVYPEEPELEALL 464 (687)
Q Consensus 452 gv~pd~~ty~~Li 464 (687)
+.|+......|.
T Consensus 186 -l~P~~~~~~~l~ 197 (208)
T 3urz_A 186 -RFPSTEAQKTLD 197 (208)
T ss_dssp -TSCCHHHHHHHH
T ss_pred -hCCCHHHHHHHH
Confidence 568866554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.019 Score=53.81 Aligned_cols=123 Identities=12% Similarity=-0.033 Sum_probs=90.8
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhCCC
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGD 437 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~P-d~~ty~~lI~~~~~~g~ 437 (687)
...|++++|.++++.+.. .......++..+-..+...|++++|...+++.... |..| ...+|..+-..|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 457899999996655543 22235678999999999999999999999987652 2222 34677888889999999
Q ss_pred hHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEH----GVYP--EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~----gv~p--d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+++|.+.+++..+. +-.| ....+..+-..+...|++++|...+++....
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 99999999887553 2121 2456778888889999999999999987643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.067 Score=46.08 Aligned_cols=92 Identities=10% Similarity=0.010 Sum_probs=78.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-..+.+.|++++|.+.|++..+.. +.+...|..+-.+|.+.|++++|...|+...+.. +-+...|..+-..+...|+
T Consensus 10 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 10 EGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhC
Confidence 5567889999999999999988753 3467899999999999999999999999988763 2245678888889999999
Q ss_pred hHHHHHHHHHHHHC
Q 005628 438 VDKACSVEEHMLEH 451 (687)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (687)
.++|.+.|+...+.
T Consensus 88 ~~~A~~~~~~al~~ 101 (126)
T 3upv_A 88 YASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.059 Score=49.02 Aligned_cols=96 Identities=10% Similarity=0.079 Sum_probs=81.5
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVF 432 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~ 432 (687)
.|.. +-..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.|++++|+..|+...... .-+...|..+-..|
T Consensus 13 ~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKS-EGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 4444 6678889999999999999988754 2378899999999999999999999999988763 23467888899999
Q ss_pred HhCCChHHHHHHHHHHHHC
Q 005628 433 CNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 433 ~~~g~~~~A~~l~~~M~~~ 451 (687)
...|++++|.+.|+...+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.12 Score=56.05 Aligned_cols=109 Identities=13% Similarity=0.053 Sum_probs=70.4
Q ss_pred ccHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC-----C
Q 005628 366 YAFQRGFEIYEKMCLDEVPMNEASLTAVGRM-A--MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-----D 437 (687)
Q Consensus 366 g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~-~--~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-----~ 437 (687)
++.++|.+.|++.. .| +...+..|-.. + ...++.++|++.|++..+.| +...+..|=..|. .| +
T Consensus 231 ~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d 302 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPAD 302 (452)
T ss_dssp CCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCC
T ss_pred CCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCC
Confidence 57788888888776 33 34455555444 2 34778888888888877766 4445555555554 44 7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+... .| +...+..|-..|.. ..+.++|...|++-.+.
T Consensus 303 ~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 303 AKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 888888887766 32 45555555555544 23777888888877766
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.058 Score=47.19 Aligned_cols=109 Identities=11% Similarity=0.103 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC----HHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG--VYPE----EPELE 461 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g--v~pd----~~ty~ 461 (687)
..+.-|=..+.+.|++++|++.|++..+.. +-+...|+.+-.+|.+.|++++|.+.|+..++.. ..++ ..+|.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 456666678899999999999999987752 2345778888899999999999999999886532 2222 24677
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHHHH
Q 005628 462 ALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADVIA 499 (687)
Q Consensus 462 ~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~I~ 499 (687)
.+-.++...|++++|++.|++-... .+.|++...|.
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l~ 123 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHHH
Confidence 7888899999999999999998876 66777655544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.21 Score=47.75 Aligned_cols=122 Identities=10% Similarity=0.011 Sum_probs=97.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC----ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG----DGDMAFDMVKRMKSLGINPRLRSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g----~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~ 433 (687)
|=..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|++.|+...+.| +...+..|=..|.
T Consensus 24 lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~ 96 (212)
T 3rjv_A 24 LADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLV 96 (212)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 5566777899999999999998876 56777777777777 6 8999999999987775 4556666666676
Q ss_pred h----CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 434 N----NGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 434 ~----~g~~~~A~~l~~~M~~~gv~-pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
. .++.++|.+.|+...+.|.. -+...+..|=..|.. .++.++|..+|++-.+.
T Consensus 97 ~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 97 NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 6 78999999999999877632 126677778788877 78899999999998776
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.011 Score=68.20 Aligned_cols=173 Identities=9% Similarity=-0.052 Sum_probs=124.2
Q ss_pred CCCchhhhhhhhhhcccccccccc-----c-CCCC-CccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 248 KSGSGMRTLDTFEVSTMNSTELGD-----S-RDMD-NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 248 k~g~~~~A~~lf~~~~~~s~em~~-----~-~g~~-d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
..|+.++|.+.+. +... . ..-+ +...|..+-.. +.+.|++++|...|++..+.. |+.
T Consensus 403 ~~~~~~~A~~~~~-------~al~~~~~~~~~~~p~~~~~~~~~a~~------~~~~g~~~~A~~~~~~al~~~--p~~- 466 (681)
T 2pzi_A 403 VLSQPVQTLDSLR-------AARHGALDADGVDFSESVELPLMEVRA------LLDLGDVAKATRKLDDLAERV--GWR- 466 (681)
T ss_dssp TTCCHHHHHHHHH-------HHHTC-------CCTTCSHHHHHHHHH------HHHHTCHHHHHHHHHHHHHHH--CCC-
T ss_pred cccCHHHHHHHHH-------HhhhhcccccccccccchhHHHHHHHH------HHhcCCHHHHHHHHHHHhccC--cch-
Confidence 5688889988885 3320 0 0112 34446666666 888999999999999887642 322
Q ss_pred ccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc
Q 005628 321 MKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM 400 (687)
Q Consensus 321 ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~ 400 (687)
...|.. +=..|.+.|++++|.+.|++..+.. +-+...|..+-..|.+.
T Consensus 467 ------------------------------~~a~~~-lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 467 ------------------------------WRLVWY-RAVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELA 514 (681)
T ss_dssp ------------------------------HHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 223333 5567889999999999999988753 22567889999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 005628 401 GDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRVSVEAGK 472 (687)
Q Consensus 401 g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~~~~~g~ 472 (687)
|++++ .+.|++..+.. .-+...|..+-..+.+.|+.++|.+.|++..+ +.|+ ...|..+..++...+.
T Consensus 515 g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred CChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 99999 99999887653 12456788889999999999999999998765 3465 4566666677666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.47 Score=48.60 Aligned_cols=239 Identities=10% Similarity=-0.004 Sum_probs=152.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCC--chhhhhhhhhhcccccccccccCCCCCcc
Q 005628 203 KRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG--SGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 203 k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~~~~~~~~~~~k~g--~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
+...-++|+++++.+... .|+-+ .||.-=..+. ..| ++++++..++ .+... .-++-.
T Consensus 45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~----------~l~~~~~~eeL~~~~-------~~L~~-nPk~y~ 104 (306)
T 3dra_A 45 AEEYSERALHITELGINE--LASHYTIWIYRFNILK----------NLPNRNLYDELDWCE-------EIALD-NEKNYQ 104 (306)
T ss_dssp TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------TCTTSCHHHHHHHHH-------HHHHH-CTTCCH
T ss_pred cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHH----------HcccccHHHHHHHHH-------HHHHH-CcccHH
Confidence 334457899999999864 45544 4565555555 455 8899999885 22221 111333
Q ss_pred chhcccccccc-ccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHH
Q 005628 280 QLDYGSSPMID-KLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIR 358 (687)
Q Consensus 280 tyn~Li~~~~~-~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~l 358 (687)
.|+.--..... .......+++++++.+++.+.+.. | ..| ..|+. -
T Consensus 105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--p--kny-----------------------------~aW~~-R 150 (306)
T 3dra_A 105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--P--KNH-----------------------------HVWSY-R 150 (306)
T ss_dssp HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--T--TCH-----------------------------HHHHH-H
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--C--CCH-----------------------------HHHHH-H
Confidence 35543222000 000111278899999999998752 2 222 12222 2
Q ss_pred HHHHHhhccHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHcCCCCCcchHHHHHH
Q 005628 359 LSEDAKKYAFQ--RGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINPRLRSYGPALS 430 (687)
Q Consensus 359 I~~~~k~g~~~--~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~------~~~A~~l~~~M~~~g~~Pd~~ty~~lI~ 430 (687)
--.+.+.|..+ ++++.+++|.+... -|-..|+---..+.+.+. ++++++.++.+..... -|...|+-+-.
T Consensus 151 ~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ 228 (306)
T 3dra_A 151 KWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLG 228 (306)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHH
T ss_pred HHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHH
Confidence 22233445556 89999999998653 477888877666667676 8899999998887642 46777888888
Q ss_pred HHHhCCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 431 VFCNNGDVDK-ACSVEEHMLEHG--VYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 431 ~~~~~g~~~~-A~~l~~~M~~~g--v~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
.+.+.|+... +.++.+.+.+.+ -..+...+..|.+.|++.|+.++|.++++.+.+....+..+-|+-
T Consensus 229 ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~ 298 (306)
T 3dra_A 229 IHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDY 298 (306)
T ss_dssp HHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHH
Confidence 8888887544 555666655433 134778899999999999999999999999987422333334443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0085 Score=51.54 Aligned_cols=85 Identities=11% Similarity=-0.037 Sum_probs=43.9
Q ss_pred hccHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHH
Q 005628 365 KYAFQRGFEIYEKMCLDE--VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~g--i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~ 442 (687)
.|++++|...|++..+.+ -+-+...|..+-..|.+.|++++|...|++..+.. +-+...|..+-.++.+.|+.++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 355556666666665543 11233455555556666666666666666655442 112344555555556666666666
Q ss_pred HHHHHHHH
Q 005628 443 SVEEHMLE 450 (687)
Q Consensus 443 ~l~~~M~~ 450 (687)
..|+...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.36 Score=51.05 Aligned_cols=209 Identities=8% Similarity=-0.019 Sum_probs=128.3
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCC-CCC---Cc------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSK-KDR---SE------QFQLRVELDMCSKRGDVMGAIRLYDKAQRE-GIKLGQY 227 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~-g~~---P~------~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~-Gi~pd~~ 227 (687)
.+.+.++..+|.+.|....+....... ... .. ...+..+...|.+.|++++|.+++..+... +-.++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 455788999999999998764322211 000 00 124778899999999999999999887642 1112222
Q ss_pred HHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHH
Q 005628 228 HYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTF 307 (687)
Q Consensus 228 tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf 307 (687)
+-..+...+. .+ +...|..+.|..++
T Consensus 93 ~~~~~~~~l~--------------------~~----------------------------------~~~~~~~~~a~~~~ 118 (434)
T 4b4t_Q 93 TVKVLKTLIE--------------------KF----------------------------------EQVPDSLDDQIFVC 118 (434)
T ss_dssp HHHHHHHHHH--------------------HH----------------------------------CSCCSCHHHHHHHH
T ss_pred HHHHHHHHHH--------------------HH----------------------------------HhCCCCHHHHHHHH
Confidence 2111111111 00 33345556666555
Q ss_pred HHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHHHHHHHHHhC--CC-
Q 005628 308 NEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGFEIYEKMCLD--EV- 383 (687)
Q Consensus 308 ~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~--gi- 383 (687)
.+...... ..+..+. ..++.. |...|...|++++|..++++.... +.
T Consensus 119 ~~~~~~~~----------------------------~~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 119 EKSIEFAK----------------------------REKRVFLKHSLSIK-LATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHH----------------------------HSSCCSSHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHH----------------------------HhCccHHHHHHHHH-HHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 54432100 0000011 112334 778889999999999999887642 21
Q ss_pred -CC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC--cchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 384 -PM-NEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GINPR--LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 384 -~p-d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~~Pd--~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.+ ...+|..++..|...|++++|..+++..... +..|. ...|..+...+...|++++|...|.+..+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 22 2457889999999999999999999876532 22222 24566677777888999999888877654
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.043 Score=55.65 Aligned_cols=131 Identities=11% Similarity=-0.056 Sum_probs=91.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCc-cccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNG-HMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~-~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
+...|++++|.++|+.+...+ |+- ..| . +-..+.+.+++++|+
T Consensus 112 L~~~g~y~eA~~~l~~~~~~~--p~~~~~~---------------------------------~-~a~l~~~~~r~~dA~ 155 (282)
T 4f3v_A 112 EAAQGNYADAMEALEAAPVAG--SEHLVAW---------------------------------M-KAVVYGAAERWTDVI 155 (282)
T ss_dssp HHHHTCHHHHHHHHTSSCCTT--CHHHHHH---------------------------------H-HHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhcC--CchHHHH---------------------------------H-HHHHHHHcCCHHHHH
Confidence 778899999999998776543 322 222 1 345778999999999
Q ss_pred HHHHHHHhCCCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc--chHHHHHHHHHhCCChHHHHHHHHHH
Q 005628 373 EIYEKMCLDEVPMN--EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL--RSYGPALSVFCNNGDVDKACSVEEHM 448 (687)
Q Consensus 373 ~lf~~M~~~gi~pd--~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~--~ty~~lI~~~~~~g~~~~A~~l~~~M 448 (687)
..|+...... .|. ...+..|=.++...|++++|+..|++.......|.. ......-.++.+.|+.++|..+|+++
T Consensus 156 ~~l~~a~~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 156 DQVKSAGKWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHTTGGGCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9998554421 111 236777778899999999999999988754332542 23445556778899999999999999
Q ss_pred HHCCCCCCHHHHHHH
Q 005628 449 LEHGVYPEEPELEAL 463 (687)
Q Consensus 449 ~~~gv~pd~~ty~~L 463 (687)
.... |+...+.+|
T Consensus 235 ~a~~--P~~~~~~aL 247 (282)
T 4f3v_A 235 QTTH--PEPKVAAAL 247 (282)
T ss_dssp HHHS--CCHHHHHHH
T ss_pred HhcC--CcHHHHHHH
Confidence 8853 554333333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.14 Score=43.75 Aligned_cols=92 Identities=9% Similarity=-0.045 Sum_probs=74.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----cchHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNE---ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----LRSYGPALS 430 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~---~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----~~ty~~lI~ 430 (687)
+-..+.+.|++++|.+.|++....... +. ..+..+-..+.+.|++++|...|+...... |+ ...+..+-.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHHHHH
Confidence 445677899999999999999875322 22 477778889999999999999999988753 44 455777788
Q ss_pred HHHhCCChHHHHHHHHHHHHCC
Q 005628 431 VFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~g 452 (687)
.+.+.|+.++|...|+...+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 8999999999999999998753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.37 Score=52.19 Aligned_cols=222 Identities=8% Similarity=-0.025 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCC---chhhhhhhhhhcccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSG---SGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g---~~~~A~~lf~~~~~~s~em 269 (687)
.+..|-..|...+.++.+..-.....+.-...++..+..|-..|. +.| +.++|...|. .-
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~----------~~g~~~~~~~A~~~~~-------~a 205 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQ----------KKQQPEQQAELLKQME-------AG 205 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHH----------HTTCHHHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HcCCcccHHHHHHHHH-------HH
Confidence 444455555555644444333333322212223336666666776 456 7788888874 22
Q ss_pred cccCCCCCccchh----ccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc
Q 005628 270 GDSRDMDNNGQLD----YGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK 345 (687)
Q Consensus 270 ~~~~g~~d~~tyn----~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~ 345 (687)
.+. |-.+...+. .+..+ ....+++++|...|+... .|. ...+
T Consensus 206 a~~-g~~~a~~~~~Lg~~y~~g------~~~~~d~~~A~~~~~~aa-~g~---~~a~----------------------- 251 (452)
T 3e4b_A 206 VSR-GTVTAQRVDSVARVLGDA------TLGTPDEKTAQALLEKIA-PGY---PASW----------------------- 251 (452)
T ss_dssp HHT-TCSCHHHHHHHHHHHTCG------GGSSCCHHHHHHHHHHHG-GGS---THHH-----------------------
T ss_pred HHC-CCHHHHHHHHHHHHHhCC------CCCCCCHHHHHHHHHHHc-CCC---HHHH-----------------------
Confidence 222 322222111 22223 334468888998888765 321 1111
Q ss_pred CCCCChhhhHHHHHHH-H--HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHcC
Q 005628 346 DWSIDNQDADEIRLSE-D--AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG-----DGDMAFDMVKRMKSLG 417 (687)
Q Consensus 346 g~~pd~~tyn~~lI~~-~--~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g-----~~~~A~~l~~~M~~~g 417 (687)
.. |=.. | ...++.++|.+.|++..+.| +...+..|-..|. .| ++++|+..|+.-. .|
T Consensus 252 ---------~~-Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g 316 (452)
T 3e4b_A 252 ---------VS-LAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR 316 (452)
T ss_dssp ---------HH-HHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT
T ss_pred ---------HH-HHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC
Confidence 11 2122 2 34789999999999999887 6777777777777 55 9999999998766 33
Q ss_pred CCCCcchHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 418 INPRLRSYGPALSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 418 ~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
+...+..|=..|.. ..+.++|.+.|+...+.|. ...+..|-..|.. ..+.++|...|+.-.+.
T Consensus 317 ---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 317 ---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp ---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred ---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 44555555555555 3499999999999988774 2334444444443 45788898888887777
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.022 Score=48.89 Aligned_cols=87 Identities=17% Similarity=0.049 Sum_probs=69.3
Q ss_pred HcCChHHHHHHHHHHHHcC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 399 SMGDGDMAFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~g--~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
..|++++|...|++..+.+ -+-+...|..+-..|.+.|++++|.+.|+...+..- -+...|..+-.+|.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999988754 123456788888899999999999999999987642 2577888899999999999999
Q ss_pred HHHHHHHHhc
Q 005628 477 YYLLHKLRTS 486 (687)
Q Consensus 477 ~~ll~~M~~~ 486 (687)
...|++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999998876
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=0.1 Score=45.20 Aligned_cols=88 Identities=15% Similarity=0.175 Sum_probs=53.7
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~ 438 (687)
..+.+.|++++|...|++..+.. +-+...|..+-..+...|++++|...|+...+. .| +...|..+-..|...|+.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence 45566677777777777666532 125556666666666677777777766665554 23 334555555666666666
Q ss_pred HHHHHHHHHHHH
Q 005628 439 DKACSVEEHMLE 450 (687)
Q Consensus 439 ~~A~~l~~~M~~ 450 (687)
++|...|+...+
T Consensus 102 ~~A~~~~~~al~ 113 (121)
T 1hxi_A 102 NAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666666666544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.048 Score=59.86 Aligned_cols=119 Identities=11% Similarity=0.011 Sum_probs=90.5
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|.+.|++++|.+.+++..+.. .-+...|..+-.+|.+.|+.+
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 34667899999999999988753 2358899999999999999999999999988763 234578888889999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 005628 440 KACSVEEHMLEHGVYPEEPELEALLRV--SVEAGKGDRVYYLLH 481 (687)
Q Consensus 440 ~A~~l~~~M~~~gv~pd~~ty~~Li~~--~~~~g~~~~A~~ll~ 481 (687)
+|.+.|++..+..-. +...+..+-.+ +.+.|++++|..+++
T Consensus 92 eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999998875321 22344444444 788899999999887
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.11 Score=57.20 Aligned_cols=126 Identities=11% Similarity=0.041 Sum_probs=91.5
Q ss_pred HHHhhccHHHHHHHHHHHHhC---CCCC---C-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCCc-chHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLD---EVPM---N-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPRL-RSYG 426 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~---gi~p---d-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd~-~ty~ 426 (687)
.+-..|++++|..++++..+. -+.| + ..+++.|...|...|++++|..++++.... | -.|++ .+|+
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355788999999999877642 1222 2 457899999999999999999998876532 2 22333 6788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 427 PALSVFCNNGDVDKACSVEEHMLEH-----GVY-PE-EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 427 ~lI~~~~~~g~~~~A~~l~~~M~~~-----gv~-pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|-..|...|++++|..++++..+- |-. |+ ..+.+.|-.++...+.+++|+.+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998876532 321 22 234455566667788899999999998775
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=95.32 E-value=0.29 Score=43.41 Aligned_cols=114 Identities=12% Similarity=0.057 Sum_probs=92.0
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCC
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGD 437 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~ 437 (687)
..-.+++++|.+.|++..+.| .|+.. |-..|...+.+++|++.|+.-.+.| +...+..|=..|.. .++
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d 76 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD 76 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC
T ss_pred cCCccCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCcc
Confidence 344567899999999999988 33333 5556666778899999999988875 55667777777777 799
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
.++|.+.|+...+.| +...+..|-..|.. .++.++|..+|++-.+.
T Consensus 77 ~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 77 LRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999999999999886 57777778888888 88999999999988877
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.74 Score=48.53 Aligned_cols=125 Identities=6% Similarity=-0.005 Sum_probs=91.6
Q ss_pred HHHhhccHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CC--CC-CcchHHHHHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSL--GI--NP-RLRSYGPALS 430 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~----~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~--g~--~P-d~~ty~~lI~ 430 (687)
.+...|..++|.+++.+... .+..+. ..++..|...|...|++++|..++.+.... +. .| ...+|..++.
T Consensus 104 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (434)
T 4b4t_Q 104 FEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESK 183 (434)
T ss_dssp HCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 33456788888888877653 333333 457888999999999999999999987643 21 11 2357888999
Q ss_pred HHHhCCChHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 431 VFCNNGDVDKACSVEEHMLEH--GVY-P-E--EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 431 ~~~~~g~~~~A~~l~~~M~~~--gv~-p-d--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.|...|++++|..+++..... .+. | . ...|..+...+...|++++|...|.+...
T Consensus 184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999876542 121 2 1 34567777777889999999988877654
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.24 E-value=0.096 Score=45.33 Aligned_cols=94 Identities=12% Similarity=-0.030 Sum_probs=77.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSV 468 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~ 468 (687)
+-.+-..+.+.|++++|...|+...+. .| +...|..+-..+...|+.++|...|+...+..- -+...|..|-..|.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 344556778899999999999998875 34 566777788889999999999999999887532 25778888999999
Q ss_pred hcCChHHHHHHHHHHHhc
Q 005628 469 EAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~ 486 (687)
+.|++++|...|++....
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999998765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.46 Score=44.39 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCC--------------cchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLG-INPR--------------LRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd--------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
...+..+-..+.+.|++++|...|++..... -.|+ ...|..+-.+|.+.|++++|...++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456677778889999999999999988642 1121 267888888999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 452 GVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 452 gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
. ..+...|..+-.+|...|++++|...|++....
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3 346788888999999999999999999998876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=95.22 E-value=0.24 Score=49.84 Aligned_cols=94 Identities=11% Similarity=0.034 Sum_probs=65.3
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSV 431 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~ 431 (687)
.+.. +-..+.+.|++++|.+.|++..... +-+...|..+-..|.+.|++++|...++...+. .| +...|..+-.+
T Consensus 6 ~~~~-~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 6 ELKE-QGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQC 81 (281)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3444 5566777788888888887776642 226677777777777888888888887776543 23 34566667777
Q ss_pred HHhCCChHHHHHHHHHHHH
Q 005628 432 FCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 432 ~~~~g~~~~A~~l~~~M~~ 450 (687)
|...|+.++|...|+...+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7778888888877777654
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.17 Score=55.10 Aligned_cols=130 Identities=10% Similarity=-0.017 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMN--------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI 418 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd--------------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~ 418 (687)
.|.. +-..|.+.|++++|...|++..+....-. ...|..+-.+|.+.|++++|+..+++.....
T Consensus 270 ~~~~-~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 347 (457)
T 1kt0_A 270 IVKE-KGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD- 347 (457)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHH-HHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 3444 55778888999999999998876321111 5788888888888899999998888877653
Q ss_pred CCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHH-HHHHHHhc
Q 005628 419 NPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAGKGDRVYY-LLHKLRTS 486 (687)
Q Consensus 419 ~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g~~~~A~~-ll~~M~~~ 486 (687)
.-+...|..+-.+|...|++++|...|+...+. .| +...|..+-..+.+.++.+++.+ ++..|-.+
T Consensus 348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 235567777788888888999998888888764 33 34566777777777777776653 44444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=95.14 E-value=0.28 Score=50.82 Aligned_cols=97 Identities=12% Similarity=-0.048 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc----------------chHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL----------------RSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~----------------~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...|..+-..|.+.|++++|...|++..... |+. ..|..+-.+|.+.|++++|...|+...+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567778888999999999999999987653 443 7899999999999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. ..+...|..+-.+|...|++++|...|++....
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 64 336888999999999999999999999999887
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=94.85 E-value=0.2 Score=57.43 Aligned_cols=127 Identities=9% Similarity=-0.017 Sum_probs=90.2
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCC---------CCC------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEV---------PMN------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSL 416 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi---------~pd------------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~ 416 (687)
.+...-+.|++++|.++|+.+..... .|+ ..+|...++..-+.|.++.|..+|....+.
T Consensus 384 ~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 384 LSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66667778889999999988876310 132 236777788777888899999999888765
Q ss_pred -C-CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 417 -G-INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 417 -g-~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+ ..+.+....+.|.-.+ .++.+.|.++|+...+. +.-+...|...++.....|+.+.|..+|++....
T Consensus 464 ~~~~~~~lyi~~A~lE~~~-~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 464 KKLVTPDIYLENAYIEYHI-SKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp GGGSCTHHHHHHHHHHHTT-TSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred cCCCChHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2 2333444444444222 35588999999888776 4446666778888888889999999999988776
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.25 Score=49.72 Aligned_cols=98 Identities=14% Similarity=-0.003 Sum_probs=83.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
+...+..+-..+.+.|++++|...|++.... .| +...|..+-..|.+.|++++|...++...+.. .-+...|..+-
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 5567788888999999999999999988775 34 66778888889999999999999999987653 23577888889
Q ss_pred HHHHhcCChHHHHHHHHHHHhc
Q 005628 465 RVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+|...|++++|...|++....
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.18 Score=55.18 Aligned_cols=116 Identities=7% Similarity=-0.003 Sum_probs=87.3
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+.+.|++++|...|++..+. .|+. ...|+. +-..|.+.|++++|.+
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~--~p~~-------------------------------~~~~~~-lg~~~~~~g~~~~A~~ 61 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL--NPSN-------------------------------AIYYGN-RSLAYLRTECYGYALG 61 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH--CTTC-------------------------------HHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh--CCcc-------------------------------HHHHHH-HHHHHHHhcCHHHHHH
Confidence 78899999999999987764 2322 233445 7788899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHH--HHhCCChHHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV--FCNNGDVDKACSVEE 446 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~--~~~~g~~~~A~~l~~ 446 (687)
.|++..+.. +-+...|..+-.+|.+.|++++|.+.|++..+.. |+ ...+..+-.+ +.+.|++++|.++++
T Consensus 62 ~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 62 DATRAIELD-KKYIKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999998864 3467889999999999999999999999987752 43 3445555444 788899999999988
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=94.64 E-value=0.2 Score=52.77 Aligned_cols=91 Identities=14% Similarity=0.102 Sum_probs=45.0
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-C
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD---------------EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-R 421 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---------------gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d 421 (687)
+-..|.+.|++++|.+.|++..+. --+-+..+|..+-.+|.+.|++++|.+.+++..+. .| +
T Consensus 229 ~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~--~p~~ 306 (370)
T 1ihg_A 229 IGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI--DPSN 306 (370)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--Cchh
Confidence 445666777777777777766541 00112334444444555555555555555544432 12 2
Q ss_pred cchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 422 LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 422 ~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...|..+-.+|...|+.++|.+.|+...+
T Consensus 307 ~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 307 TKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33444444444555555555555544443
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.034 Score=46.34 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
..|..+-..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|+.++|.+.++...+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 344444555555555555555555544431 11334444555555555555555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=94.40 E-value=1.9 Score=43.99 Aligned_cols=230 Identities=7% Similarity=0.010 Sum_probs=148.3
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG--DVMGAIRLYDKAQREGIKLGQYHYNVLLYLC-- 236 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g--~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~-- 236 (687)
.+...-++|+++++.+.... |+ +...||.-=..+...| ++++++++++.+....-+ +..+|+.--..+
T Consensus 44 ~~~e~s~~aL~~t~~~L~~n--P~-----~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 44 KAEEYSERALHITELGINEL--AS-----HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQ 115 (306)
T ss_dssp HTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--cH-----HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHH
Confidence 34445568999999986532 21 2356777777777788 999999999999975322 334455443333
Q ss_pred --HhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChh--hHHHHHHHHHh
Q 005628 237 --SSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--DLDSTFNEKEN 312 (687)
Q Consensus 237 --~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~--~A~~lf~eM~~ 312 (687)
...+ ..++.++++.+++ .+... .-.|-..|+----. +.+.|.++ +++..++.|.+
T Consensus 116 ~~~~l~-------~~~~~~~EL~~~~-------~~l~~-~pkny~aW~~R~~v------l~~l~~~~~~~EL~~~~~~i~ 174 (306)
T 3dra_A 116 IMELNN-------NDFDPYREFDILE-------AMLSS-DPKNHHVWSYRKWL------VDTFDLHNDAKELSFVDKVID 174 (306)
T ss_dssp HHHHTT-------TCCCTHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhcc-------ccCCHHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhcccChHHHHHHHHHHHH
Confidence 3111 2367888888885 34332 22244556554444 55566777 99999999987
Q ss_pred cCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHh---hccHHHHHHHHHHHHhCCCCCCHHH
Q 005628 313 LGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAK---KYAFQRGFEIYEKMCLDEVPMNEAS 389 (687)
Q Consensus 313 ~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k---~g~~~~A~~lf~~M~~~gi~pd~~t 389 (687)
.... |-..|+ |-..++..+.+ ...++++++.++++.... +-|...
T Consensus 175 ~d~~-N~sAW~------------------------------~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~Sa 222 (306)
T 3dra_A 175 TDLK-NNSAWS------------------------------HRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPST 222 (306)
T ss_dssp HCTT-CHHHHH------------------------------HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHH
T ss_pred hCCC-CHHHHH------------------------------HHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccH
Confidence 6422 222221 11112221111 112788999999888764 358899
Q ss_pred HHHHHHHHHHcCChHH-HHHHHHHHHHcC--CCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 390 LTAVGRMAMSMGDGDM-AFDMVKRMKSLG--INPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~-A~~l~~~M~~~g--~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
|+-+-..+.+.|+..+ +..+..+....+ -..+...+..+...|++.|+.++|.++++.+.+.
T Consensus 223 W~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 223 WNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 9999999999888555 445666554432 1235677888999999999999999999998763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=94.16 E-value=0.53 Score=42.34 Aligned_cols=110 Identities=14% Similarity=0.083 Sum_probs=55.4
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
.=..+.+.|++++|.+.|.+....- ..+.......... ...+.. -+...|..+-.+|.+.|+
T Consensus 17 ~G~~~~~~~~~~~A~~~y~~al~~~------------~~~~~~~~~~~~~--~~~~~~----~~~~~~~nla~~~~~~~~ 78 (162)
T 3rkv_A 17 KGNELFVQKDYKEAIDAYRDALTRL------------DTLILREKPGEPE--WVELDR----KNIPLYANMSQCYLNIGD 78 (162)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHTSCTTSHH--HHHHHH----THHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHH------------HHhcccCCCCHHH--HHHHHH----HHHHHHHHHHHHHHhcCc
Confidence 3456778889999988888765420 0000000000000 000000 122345555555556666
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+++|...++..++.. +-+...|..+-.+|...|++++|...|++....
T Consensus 79 ~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 79 LHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 666666665555432 223455555666666666666666666665554
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=94.08 E-value=0.23 Score=43.63 Aligned_cols=99 Identities=10% Similarity=-0.026 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CC----cchHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CH
Q 005628 388 ASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN-PR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH----GVYP-EE 457 (687)
Q Consensus 388 ~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----gv~p-d~ 457 (687)
.++..+-..+...|++++|...+++.....-. ++ ..+|..+-..+...|++++|.+.+++..+. +-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46778888899999999999999887653110 11 147888888999999999999999987653 1111 14
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 458 PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
..+..+-..+...|++++|...+++....
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 118 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAI 118 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 56777888889999999999999887653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.44 Score=42.93 Aligned_cols=30 Identities=7% Similarity=-0.005 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 457 EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 457 ~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
...|..+-.+|.+.|++++|...+++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 455666666777777777777777776665
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.13 Score=53.36 Aligned_cols=124 Identities=9% Similarity=-0.018 Sum_probs=65.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHH------------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEA------------------SLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN 419 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~------------------tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~ 419 (687)
+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|+..++...... .
T Consensus 185 ~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 261 (338)
T 2if4_A 185 DGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-E 261 (338)
T ss_dssp HHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 556777889999999999987653 34433 67777777778888888888887776542 1
Q ss_pred CCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHhcCChHHHHHHHHHHHhc
Q 005628 420 PRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPE-EPELEALLRV-SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 420 Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd-~~ty~~Li~~-~~~~g~~~~A~~ll~~M~~~ 486 (687)
-+...|..+-.+|...|++++|...|+...+. .|+ ...+..|-.. ....+..+++..+|.+|...
T Consensus 262 ~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 262 KNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------------------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 24566777777788888888888888776543 333 2233333333 23345556666677766554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=93.70 E-value=3.3 Score=43.07 Aligned_cols=237 Identities=10% Similarity=-0.053 Sum_probs=140.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcccCCcccCCCC-chhhhhhhhhhcccccccccccCCCCCcc
Q 005628 202 SKRGDVMGAIRLYDKAQREGIKLGQ-YHYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 202 ~k~g~~~~A~~lf~~M~~~Gi~pd~-~tyn~Ll~~~~~~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
.+.+.-++|+++++.+... .|+- ..||.-=..+. ..| .+++++..++ .+... .-++-.
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~----------~l~~~l~eEL~~~~-------~~L~~-nPKny~ 124 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLT----------SLNKSLEDELRLMN-------EFAVQ-NLKSYQ 124 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HHHHT-TCCCHH
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHH----------HhhhhHHHHHHHHH-------HHHHh-CCCcHH
Confidence 3344556899999998865 3443 34555444444 344 4788888875 33322 222444
Q ss_pred chhccccccccccccccC-C-ChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHH
Q 005628 280 QLDYGSSPMIDKLESNSS-Y-RFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEI 357 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~-g-~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~ 357 (687)
.|+.--.. +.+. + ++++++.+++.+.+..-+ |-..|+ |-..
T Consensus 125 aW~hR~wl------L~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~------------------------------~R~w 167 (349)
T 3q7a_A 125 VWHHRLLL------LDRISPQDPVSEIEYIHGSLLPDPK-NYHTWA------------------------------YLHW 167 (349)
T ss_dssp HHHHHHHH------HHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHH------------------------------HHHH
T ss_pred HHHHHHHH------HHHhcCCChHHHHHHHHHHHHhCCC-CHHHHH------------------------------HHHH
Confidence 46554333 3332 3 678888888888764211 112221 1111
Q ss_pred HHHHHHhhc-----cHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHHcCCCCCcchH
Q 005628 358 RLSEDAKKY-----AFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD-------GDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 358 lI~~~~k~g-----~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~-------~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
++..+.+.. .+.++++.++++.+..+ -|...|+-.-..+.+.+. ++++++.+++..... .-|...|
T Consensus 168 vl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW 245 (349)
T 3q7a_A 168 LYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAW 245 (349)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHH
Confidence 222222211 23489999999988653 488889888888888776 688999988877653 2355667
Q ss_pred HHHHHHHHhCCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 005628 426 GPALSVFCNNGDV--------------------DKACSVEEHMLEHG-----VYPEEPELEALLRVSVEAGKGDRVYYLL 480 (687)
Q Consensus 426 ~~lI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----v~pd~~ty~~Li~~~~~~g~~~~A~~ll 480 (687)
+-+-..+.+.|.. ....++..++...+ -.+.......|.+.|...|+.++|.+++
T Consensus 246 ~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~ 325 (349)
T 3q7a_A 246 NYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVF 325 (349)
T ss_dssp HHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 7666666666553 22333333333322 1467888999999999999999999999
Q ss_pred HHHHhccCCCChhHHHH
Q 005628 481 HKLRTSVRKVSPSTADV 497 (687)
Q Consensus 481 ~~M~~~~~g~~p~t~~~ 497 (687)
+.+.+....+..+-|+-
T Consensus 326 ~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 326 EKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp HHHHHTTCGGGHHHHHH
T ss_pred HHHHhhhChHHHHHHHH
Confidence 99987633333334443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.28 Score=41.27 Aligned_cols=77 Identities=16% Similarity=-0.005 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 371 A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
|.+.|++..+.. +-+...|..+-..|...|++++|...|+...... ..+...|..+-..|...|+.++|...|+...
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555544432 2245556666666666666666666666655432 1123445555555555566666655555543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=93.46 E-value=1 Score=49.41 Aligned_cols=176 Identities=10% Similarity=0.024 Sum_probs=106.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhccc---------CCCC---ChhhhHHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKK---------DWSI---DNQDADEIRLSE 361 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~---------g~~p---d~~tyn~~lI~~ 361 (687)
+.+.|+++.|..+|++.... |+..... +.-+...+...++..+... +..+ ....|-. .+..
T Consensus 223 ~~~~~~~~~ar~i~erAi~~---P~~~~l~---~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~-y~~~ 295 (493)
T 2uy1_A 223 LIGIGQKEKAKKVVERGIEM---SDGMFLS---LYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN-HLNY 295 (493)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CCSSHHH---HHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHhC---CCcHHHH---HHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH-HHHH
Confidence 56678999999999998887 6654332 1111100101111111111 0001 1123333 4455
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHHcCChHHHHHHHHHHHHcCCCCCc-chHHHHHHHHHhCCCh
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLT--AVGRMAMSMGDGDMAFDMVKRMKSLGINPRL-RSYGPALSVFCNNGDV 438 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn--~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~~~g~~ 438 (687)
+-+.+.++.|..+|+.....+ .+...|. +.+...+ .++.+.|..+|+...+.- |+. ..+...|+...+.|+.
T Consensus 296 ~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 296 VLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCH
Confidence 556778899999999882222 2333443 3333333 236899999998877642 332 2345567777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.|..+|+... -....|...++.=...|+.+.+..+++++...
T Consensus 371 ~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~ 413 (493)
T 2uy1_A 371 ENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMDA 413 (493)
T ss_dssp HHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999998872 25778888888778889998888888877753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=93.22 E-value=0.8 Score=36.00 Aligned_cols=61 Identities=20% Similarity=0.253 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|..+-..+...|++++|...|++..... ..+...|..+-..+.+.|+.++|.+.|++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44444445555555555555555544331 11233444444555555555555555555444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.98 E-value=0.35 Score=53.10 Aligned_cols=99 Identities=9% Similarity=-0.027 Sum_probs=74.8
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHH-----cC-C
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCL-----DEV-PMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKS-----LG-I 418 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~-----~gi-~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~-----~g-~ 418 (687)
.++++ |...|...|++++|..++++..+ .|. -|+ ..+|+.|-..|...|++++|..++++-.. .| -
T Consensus 352 ~~~~n-La~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~ 430 (490)
T 3n71_A 352 RLLSI-ASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS 430 (490)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred HHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 46777 88999999999999999988763 232 233 36799999999999999999999887543 23 1
Q ss_pred CCCc-chHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 419 NPRL-RSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 419 ~Pd~-~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|++ .+.+.|-.++...+..++|..+|..+.+.
T Consensus 431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1333 34556666777888999999999988653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=92.76 E-value=1.4 Score=38.73 Aligned_cols=116 Identities=11% Similarity=-0.017 Sum_probs=88.8
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
..-..++++|...|.+-.+.|. |+.. |=..|...+.+++|.+
T Consensus 5 ~g~~~d~~~A~~~~~~aa~~g~-~~a~-------------------------------------lg~~y~~g~~~~~A~~ 46 (138)
T 1klx_A 5 GTVKKDLKKAIQYYVKACELNE-MFGC-------------------------------------LSLVSNSQINKQKLFQ 46 (138)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC-TTHH-------------------------------------HHHHTCTTSCHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHcCCC-Hhhh-------------------------------------HHHHHHcCCCHHHHHH
Confidence 4445567889999988877762 2211 1123445567788999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHh----CCChHHHHHHH
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCN----NGDVDKACSVE 445 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~----~g~~~~A~~l~ 445 (687)
.|++-.+.| +...+..|-..|.. .++.++|++.|+.-.+.| +...+..|=..|.. .++.++|.+.|
T Consensus 47 ~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~ 120 (138)
T 1klx_A 47 YLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTF 120 (138)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 999998876 67888888888888 899999999999998876 45667777777877 89999999999
Q ss_pred HHHHHCCC
Q 005628 446 EHMLEHGV 453 (687)
Q Consensus 446 ~~M~~~gv 453 (687)
+...+.|.
T Consensus 121 ~~Aa~~g~ 128 (138)
T 1klx_A 121 EKACRLGS 128 (138)
T ss_dssp HHHHHTTC
T ss_pred HHHHHCCC
Confidence 99888764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.65 Score=38.95 Aligned_cols=80 Identities=9% Similarity=-0.035 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 405 MAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 405 ~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
+|...|++..+.. +-+...|..+-..|...|++++|...|+...+.. ..+...|..+-..|...|++++|...|++..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4667777766542 2356778888889999999999999999998764 2357788899999999999999999999887
Q ss_pred hc
Q 005628 485 TS 486 (687)
Q Consensus 485 ~~ 486 (687)
..
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 65
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=92.23 E-value=1.3 Score=46.37 Aligned_cols=97 Identities=14% Similarity=0.031 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc--------------CCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSL--------------GINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGV 453 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~--------------g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv 453 (687)
.|..+-..+.+.|++++|...|++..+. ...| +...|..+-.+|.+.|++++|.+.++...+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 4666777889999999999999987751 0122 45678888899999999999999999998753
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 454 YPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 454 ~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.-+...|..+-.+|...|++++|...|++....
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 236778888999999999999999999998877
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=92.09 E-value=1.9 Score=46.60 Aligned_cols=97 Identities=12% Similarity=-0.011 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------cchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 387 EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR----------------LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 387 ~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd----------------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...|..+-..|.+.|++++|...|++.... .|+ ...|..+-.+|.+.|++++|...++..++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 346777788899999999999999988764 243 47888999999999999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. .-+...|..+-.+|...|++++|...|++....
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 64 236788999999999999999999999998876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.97 E-value=0.4 Score=39.47 Aligned_cols=67 Identities=12% Similarity=0.201 Sum_probs=54.7
Q ss_pred hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc
Q 005628 352 QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL 422 (687)
Q Consensus 352 ~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~ 422 (687)
..|.. +-..+.+.|++++|.+.|++..... +.+...|..+-.++.+.|++++|...++..... .|+.
T Consensus 5 ~~~~~-~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~ 71 (111)
T 2l6j_A 5 EKQKE-QGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTA 71 (111)
T ss_dssp HHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSST
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCc
Confidence 34445 6677889999999999999988753 346788999999999999999999999998764 4654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=91.81 E-value=2.8 Score=38.33 Aligned_cols=103 Identities=8% Similarity=0.021 Sum_probs=66.4
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCCc
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVP-M-----NE-----ASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPRL 422 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~-p-----d~-----~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd~ 422 (687)
=..+.+.|++++|.+.|++..+.... | +. ..|+.+-.++.+.|++++|+..++.-.+. .+.||-
T Consensus 18 G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~ 97 (159)
T 2hr2_A 18 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 97 (159)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCch
Confidence 35677889999999999988764221 1 22 27777778888888888888887776653 124543
Q ss_pred -chH----HHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 005628 423 -RSY----GPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPELE 461 (687)
Q Consensus 423 -~ty----~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~ty~ 461 (687)
..| ...=.++...|++++|...|+...+ .|+.+......
T Consensus 98 ~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~ 146 (159)
T 2hr2_A 98 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMM 146 (159)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred HHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 344 5555666677777777777776543 34554444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=91.55 E-value=0.95 Score=37.19 Aligned_cols=63 Identities=8% Similarity=0.076 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHH
Q 005628 386 NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHML 449 (687)
Q Consensus 386 d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~ 449 (687)
+...|..+-..|.+.|++++|...|+...+.. +-+...|..+-.+|.+.|+.++|.+.|+...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555555566666665555555432 1123345555555555555555555555543
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=91.29 E-value=1.3 Score=34.60 Aligned_cols=76 Identities=17% Similarity=0.134 Sum_probs=57.3
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSV 431 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~ 431 (687)
.|.. +-..|.+.|++++|...|++..... +.+...|..+-..+.+.|++++|...|++..... |+ ...+..+-..
T Consensus 11 ~~~~-la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~l~~~ 86 (91)
T 1na3_A 11 AWYN-LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHH-HHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCHHHHHHHHHH
Confidence 3444 6677889999999999999988753 3367889999999999999999999999987652 43 3344444333
Q ss_pred H
Q 005628 432 F 432 (687)
Q Consensus 432 ~ 432 (687)
+
T Consensus 87 ~ 87 (91)
T 1na3_A 87 K 87 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=90.72 E-value=8.2 Score=40.04 Aligned_cols=226 Identities=12% Similarity=-0.010 Sum_probs=137.5
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRG-DVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g-~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
+.+...-.+|+++++.+.... |+ +...||.-=..+...| ++++++++++.+....- -+..+|+.--..+..
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n--P~-----~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN--PA-----HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhC--ch-----hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHH
Confidence 345556678999999997542 11 2256776666666777 59999999999997542 356677766655552
Q ss_pred cccCCcccCCCC-chhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChh--------hHHHHHHH
Q 005628 239 AAVGVVKPAKSG-SGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFD--------DLDSTFNE 309 (687)
Q Consensus 239 ~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~--------~A~~lf~e 309 (687)
. .+ +.++++++++ .+... .-.|-..|+----. +.+.|.++ ++++.+++
T Consensus 136 l---------~~~~~~~EL~~~~-------k~L~~-dpkNy~AW~~R~wv------l~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 136 I---------SPQDPVSEIEYIH-------GSLLP-DPKNYHTWAYLHWL------YSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp H---------CCSCCHHHHHHHH-------HHTSS-CTTCHHHHHHHHHH------HHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred h---------cCCChHHHHHHHH-------HHHHh-CCCCHHHHHHHHHH------HHHhccccccchhhHHHHHHHHHH
Confidence 1 13 5678888774 34332 22355556553333 33333444 88888888
Q ss_pred HHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhc-------cHHHHHHHHHHHHhCC
Q 005628 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-------AFQRGFEIYEKMCLDE 382 (687)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g-------~~~~A~~lf~~M~~~g 382 (687)
+.+.... |...|+ . .-..+.+.+ .++++++.++++....
T Consensus 193 ~I~~dp~-N~SAW~--------------------------------~-R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~ 238 (349)
T 3q7a_A 193 MLRVDGR-NNSAWG--------------------------------W-RWYLRVSRPGAETSSRSLQDELIYILKSIHLI 238 (349)
T ss_dssp HHHHCTT-CHHHHH--------------------------------H-HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCC-CHHHHH--------------------------------H-HHHHHHhccccccchHHHHHHHHHHHHHHHhC
Confidence 8876321 222222 1 111111222 2678899988887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCh--------------------HHHHHHHHHHHHcC-----CCCCcchHHHHHHHHHhCCC
Q 005628 383 VPMNEASLTAVGRMAMSMGDG--------------------DMAFDMVKRMKSLG-----INPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 383 i~pd~~tyn~LI~~~~~~g~~--------------------~~A~~l~~~M~~~g-----~~Pd~~ty~~lI~~~~~~g~ 437 (687)
+-|...|+-+-..+.+.|.. ....++..++...+ -.+......-|.+.|+..|+
T Consensus 239 -P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~ 317 (349)
T 3q7a_A 239 -PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNR 317 (349)
T ss_dssp -TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTC
T ss_pred -CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCC
Confidence 34788898877777777664 22223322222221 02455677888899999999
Q ss_pred hHHHHHHHHHHHHC
Q 005628 438 VDKACSVEEHMLEH 451 (687)
Q Consensus 438 ~~~A~~l~~~M~~~ 451 (687)
.++|.++++.+.+.
T Consensus 318 ~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 318 VDDAAKVFEKLSSE 331 (349)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999998654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=90.58 E-value=3 Score=47.93 Aligned_cols=71 Identities=7% Similarity=0.063 Sum_probs=35.6
Q ss_pred hhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACS 443 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~ 443 (687)
..|++++|+++.+.+ .+...|..|-..+.+.|+++.|.+.|..+.. |..+..-|...|+.+...+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 445555555554433 2445566666666666666666666655432 3334444444444444444
Q ss_pred HHHHHH
Q 005628 444 VEEHML 449 (687)
Q Consensus 444 l~~~M~ 449 (687)
+-+...
T Consensus 729 ~~~~a~ 734 (814)
T 3mkq_A 729 LAKDAE 734 (814)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 433333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.27 E-value=1.1 Score=46.41 Aligned_cols=95 Identities=11% Similarity=-0.076 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc------------------hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR------------------SYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~------------------ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
.|..+-..+.+.|++++|...|++.... .|+.. .|..+-.+|.+.|++++|...++..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3555666777899999999999987654 24433 788888899999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.. .-+...|..+-.+|...|++++|...|++....
T Consensus 259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 53 236788999999999999999999999987665
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=1.5 Score=47.24 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=51.4
Q ss_pred CChHHHHHHHHHHHHc--C-CC---CC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHHHH
Q 005628 401 GDGDMAFDMVKRMKSL--G-IN---PR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALLRV 466 (687)
Q Consensus 401 g~~~~A~~l~~~M~~~--g-~~---Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li~~ 466 (687)
|++++|..++++..+. . +- |+ ..+|+.|...|...|++++|..++++.++- | -.|+ ..+|+.|-..
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 5667777776655431 1 11 22 256777777777777777777777765432 2 1232 3456777777
Q ss_pred HHhcCChHHHHHHHHHHH
Q 005628 467 SVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~ 484 (687)
|...|++++|+.++++-.
T Consensus 392 ~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHH
Confidence 777777777777776543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=90.06 E-value=0.98 Score=48.60 Aligned_cols=85 Identities=13% Similarity=0.069 Sum_probs=42.0
Q ss_pred HcCChHHHHHHHHHHHHc--C-CCCC----cchHHHHHHHHHhCCChHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 005628 399 SMGDGDMAFDMVKRMKSL--G-INPR----LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----G-VYPE-EPELEALL 464 (687)
Q Consensus 399 ~~g~~~~A~~l~~~M~~~--g-~~Pd----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----g-v~pd-~~ty~~Li 464 (687)
+.|++++|..++++..+. . +-|+ ..+++.|...|...|++++|..++++.++- | -.|+ ..+|+.|-
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVG 378 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHH
Confidence 344555555555554432 1 1111 245555555555566666666555554321 1 1122 23455555
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 005628 465 RVSVEAGKGDRVYYLLHKL 483 (687)
Q Consensus 465 ~~~~~~g~~~~A~~ll~~M 483 (687)
..|...|++++|+.++++-
T Consensus 379 ~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHH
Confidence 6666666666666655543
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=89.95 E-value=3.4 Score=37.72 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------c-----chHHHHHHHHHhCCChHHHHHHHHHHHHC----
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR--------L-----RSYGPALSVFCNNGDVDKACSVEEHMLEH---- 451 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--------~-----~ty~~lI~~~~~~g~~~~A~~l~~~M~~~---- 451 (687)
.+...-..+.+.|++++|...|+...+. .|+ . ..|+.+-.++.+.|++++|...++..++.
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3444555678899999999999987764 344 2 28889999999999999999999998874
Q ss_pred -CCCCCH-HHH----HHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 452 -GVYPEE-PEL----EALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 452 -gv~pd~-~ty----~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.|+. ..| ...=.++...|++++|+..|++-.+-
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 225654 456 67778889999999999999987654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=1.3 Score=47.61 Aligned_cols=93 Identities=10% Similarity=0.050 Sum_probs=73.6
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCCc-c
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLD---EVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPRL-R 423 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~---gi~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd~-~ 423 (687)
.+..+.+.|++++|.+++++..+. -+.|+ ..+++.|...|...|++++|+.++++...- | -.|++ .
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 456677889999999999988753 12233 468899999999999999999999977632 2 22433 6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 424 SYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 424 ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
+|+.|-..|...|+.++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 789999999999999999999988754
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=89.20 E-value=8 Score=40.36 Aligned_cols=148 Identities=8% Similarity=-0.045 Sum_probs=96.0
Q ss_pred CCCChhhhHHHHHHHHH--h---hccHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHH---cC--ChHHHHHHHHHHHH
Q 005628 347 WSIDNQDADEIRLSEDA--K---KYAFQRGFEIYEKMCLDEVPMN-EASLTAVGRMAMS---MG--DGDMAFDMVKRMKS 415 (687)
Q Consensus 347 ~~pd~~tyn~~lI~~~~--k---~g~~~~A~~lf~~M~~~gi~pd-~~tyn~LI~~~~~---~g--~~~~A~~l~~~M~~ 415 (687)
.+.+...|.. .+.+.. . ...+.+|..+|++..+. .|+ ...|..+.-+|.- .+ .......+-..+..
T Consensus 190 ~p~~~~Aydl-~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTN-FYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHH-HHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445555655 443322 2 33568999999999875 354 3344433333321 11 11111111111111
Q ss_pred ----cCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCC
Q 005628 416 ----LGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVS 491 (687)
Q Consensus 416 ----~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~ 491 (687)
..-..+..+|.++-..+...|++++|...++.....+ |+...|..+=..+.-.|++++|.+.|++-... .|.
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~ 342 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPG 342 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCS
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC
Confidence 1224567788888777777899999999999999876 88888877778889999999999999988887 777
Q ss_pred hhHHHHHHHH
Q 005628 492 PSTADVIAKW 501 (687)
Q Consensus 492 p~t~~~I~~~ 501 (687)
+.||..+..+
T Consensus 343 ~~t~~~~~~l 352 (372)
T 3ly7_A 343 ANTLYWIENG 352 (372)
T ss_dssp HHHHHHHHHS
T ss_pred cChHHHHhCc
Confidence 7787655443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=88.85 E-value=1.6 Score=35.78 Aligned_cols=65 Identities=8% Similarity=-0.072 Sum_probs=55.1
Q ss_pred CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 421 RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 421 d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+...|..+-..|.+.|++++|.+.|+...+..- -+...|..|-.+|.+.|++++|...|++....
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 445677888899999999999999999987642 25668889999999999999999999987765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=88.55 E-value=1.3 Score=47.59 Aligned_cols=87 Identities=7% Similarity=-0.064 Sum_probs=68.7
Q ss_pred hhccHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCCc-chHHHHH
Q 005628 364 KKYAFQRGFEIYEKMCL---DEVPMN----EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----G-INPRL-RSYGPAL 429 (687)
Q Consensus 364 k~g~~~~A~~lf~~M~~---~gi~pd----~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g-~~Pd~-~ty~~lI 429 (687)
..|++++|..++++..+ .-+.|+ ..+++.|...|...|++++|..++++...- | -.|++ .+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 35688999999988764 222333 368999999999999999999999987632 3 23444 6799999
Q ss_pred HHHHhCCChHHHHHHHHHHHH
Q 005628 430 SVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 430 ~~~~~~g~~~~A~~l~~~M~~ 450 (687)
..|...|+.++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=88.20 E-value=2 Score=49.46 Aligned_cols=74 Identities=8% Similarity=-0.044 Sum_probs=56.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
++..+-+.|..++|+++.++-. .-.......|++++|+++.+.+ .+...|..|-..+.+.|+
T Consensus 635 ~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 635 IARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCC
Confidence 6777888889999887764221 1133456789999999987543 466789999999999999
Q ss_pred hHHHHHHHHHHH
Q 005628 438 VDKACSVEEHML 449 (687)
Q Consensus 438 ~~~A~~l~~~M~ 449 (687)
++.|.+.|..+.
T Consensus 697 ~~~A~~~y~~~~ 708 (814)
T 3mkq_A 697 FKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcc
Confidence 999999998874
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.96 E-value=7.6 Score=36.00 Aligned_cols=103 Identities=10% Similarity=0.117 Sum_probs=81.9
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
-....|+++.|.++.+++ -+...|..|-+...+.|+++-|.+.|..... |..|.--|.-.|+.++
T Consensus 14 LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~ 78 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNK 78 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHH
T ss_pred HHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHH
Confidence 345789999999999887 3788999999999999999999999987543 5667777777899888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 441 ACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
-.++-+.-...| -++.-...+.-.|+++++.++|.+..
T Consensus 79 L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 79 LSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 777766655555 35666777778899999999986543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=85.59 E-value=2.1 Score=34.39 Aligned_cols=55 Identities=15% Similarity=0.210 Sum_probs=27.6
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEA-SLTAVGRMAMSMGDGDMAFDMVKRMKS 415 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~-tyn~LI~~~~~~g~~~~A~~l~~~M~~ 415 (687)
..+.+.|++++|.+.|++..+.. +-+.. .|..+-..|...|++++|...|+...+
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34445555555555555554432 11333 455555555555555555555555444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.97 E-value=4.7 Score=36.46 Aligned_cols=48 Identities=2% Similarity=-0.058 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHc
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG---DGDMAFDMVKRMKSL 416 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g---~~~~A~~l~~~M~~~ 416 (687)
+..+.+-|.+....|. ++..+.-.+--++++.. +++++..+|++..+.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~ 64 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK 64 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 3445555555544443 45555555555555555 444566666555544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.47 E-value=3.1 Score=38.00 Aligned_cols=98 Identities=12% Similarity=0.136 Sum_probs=60.6
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHHcCCCCCc-chHHHHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG----------DMAFDMVKRMKSLGINPRL-RSYGPALS 430 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~----------~~A~~l~~~M~~~g~~Pd~-~ty~~lI~ 430 (687)
..+.+.+++|.+.++...+.. +-+...|+.+=.++...+++ ++|+..|++..+. .|+. ..|..+=.
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l--dP~~~~A~~~LG~ 88 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh--CcCcHHHHHHHHH
Confidence 346678899999999888754 33677777777777777664 4666666665554 3433 45666666
Q ss_pred HHHhCC-----------ChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 005628 431 VFCNNG-----------DVDKACSVEEHMLEHGVYPEEPELEALL 464 (687)
Q Consensus 431 ~~~~~g-----------~~~~A~~l~~~M~~~gv~pd~~ty~~Li 464 (687)
+|...| ++++|.+.|+...+ +.|+...|..-+
T Consensus 89 ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 89 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 665543 55666666665554 345544443333
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=81.87 E-value=5.4 Score=31.78 Aligned_cols=58 Identities=17% Similarity=0.164 Sum_probs=48.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCC-cc-hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPR-LR-SYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~-ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
....+.+.|++++|...|+...+.. |+ .. .|..+-..|...|+.++|.+.|+...+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3456778999999999999988753 44 45 78888889999999999999999998764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=81.62 E-value=28 Score=30.87 Aligned_cols=123 Identities=14% Similarity=0.094 Sum_probs=85.2
Q ss_pred hccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-C----------------CCCCcchHHH
Q 005628 365 KYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL-G----------------INPRLRSYGP 427 (687)
Q Consensus 365 ~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-g----------------~~Pd~~ty~~ 427 (687)
.|.++++.++..+.... -+..-||.+|--....-+-+-.+++++.+-+. . ..-+..-+..
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~ 96 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNK 96 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHH
Confidence 45667778888887764 25566676666555555555555555544221 0 1124445667
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 428 ALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 428 lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
.|+.+...|.-+.-.++..++.. +-.|+....-.+-.+|.+.|+..+|.+++.+--++ |+...
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k--G~kEA 159 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK--GEKEA 159 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHH
T ss_pred HHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh--hhHHH
Confidence 77788888888888888888644 46778888889999999999999999999998888 65543
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=81.05 E-value=16 Score=39.76 Aligned_cols=23 Identities=4% Similarity=-0.278 Sum_probs=14.8
Q ss_pred HHHHHhhccHHHHHHHHHHHHhC
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLD 381 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~ 381 (687)
+.-+.+.|++++|.++|++....
T Consensus 220 a~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 220 SEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhC
Confidence 34455666777777777766655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=80.84 E-value=41 Score=37.14 Aligned_cols=132 Identities=5% Similarity=-0.057 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC-ChHHHHHH
Q 005628 368 FQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMG--DGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG-DVDKACSV 444 (687)
Q Consensus 368 ~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g--~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g-~~~~A~~l 444 (687)
++++++.++++.+.. +-+..+|+.---.+.+.+ +++++++.++.+.+... -|...|+.---.+.+.| ..+++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~-~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc-ccccHHHHHHHHHHHcCCChHHHHHH
Confidence 899999999998764 347788888888888889 77999999999998742 35667777777777888 89999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhccCCCCh-hHHHHHHHHHcC
Q 005628 445 EEHMLEHGVYPEEPELEALLRVSVEA--------------GKGDRVYYLLHKLRTSVRKVSP-STADVIAKWFNS 504 (687)
Q Consensus 445 ~~~M~~~gv~pd~~ty~~Li~~~~~~--------------g~~~~A~~ll~~M~~~~~g~~p-~t~~~I~~~~~~ 504 (687)
++.+.+.... |...|+..-..+.+. +.++++++++++.... .|.. +.|.-...++..
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~ 238 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGR 238 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhc
Confidence 9999876543 778888777776653 4578899988887766 3332 255555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 687 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 98.84 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.42 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.99 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 97.64 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.47 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 97.16 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 96.94 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.77 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 96.65 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 96.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 96.54 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.5 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 96.34 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 96.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.27 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 96.23 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 96.23 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 96.19 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.8 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 95.79 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 95.62 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 95.53 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 95.37 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 95.33 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 95.19 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 94.98 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 94.91 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.74 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 94.74 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 94.71 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 94.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 94.11 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 93.7 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 93.7 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 93.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 92.71 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 92.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 92.03 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 91.49 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 90.0 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 89.89 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 88.6 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 87.4 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 86.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 85.92 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 82.36 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=2.2e-07 Score=94.86 Aligned_cols=296 Identities=11% Similarity=-0.024 Sum_probs=183.9
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
..+.++.++|.+.|+...+.. |+ +..+|..+...|.+.|++++|+..+..............+..........
T Consensus 43 ~~~~~~~~~A~~~~~~al~~~--p~-----~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (388)
T d1w3ba_ 43 HFQCRRLDRSAHFSTLAIKQN--PL-----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccccc
Confidence 446788899999999876532 11 24688888889999999999999998888654332222111111111100
Q ss_pred ccCC-----------------------cccCCCCchhhhhhhhhhcccccccccccCCCCCccchhcccccccccccccc
Q 005628 240 AVGV-----------------------VKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNS 296 (687)
Q Consensus 240 ~~~~-----------------------~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~ 296 (687)
.... ......+....+...+. +.... ...+...+..+-.. +..
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~~~~l~~~------~~~ 181 (388)
T d1w3ba_ 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL-------KAIET-QPNFAVAWSNLGCV------FNA 181 (388)
T ss_dssp CSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHT
T ss_pred cccccccccccccccccccccccccccccccccchhhhhHHHHH-------Hhhcc-CcchhHHHHhhccc------ccc
Confidence 0000 00012222233333331 11110 11122334444444 666
Q ss_pred CCChhhHHHHHHHHHhcCCCCCcc-ccchhhHhhccc-----cccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHH
Q 005628 297 SYRFDDLDSTFNEKENLGQFSNGH-MKLNSQLLDGRS-----NLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQR 370 (687)
Q Consensus 297 ~g~~~~A~~lf~eM~~~g~~Pd~~-ty~~~~li~g~~-----~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~ 370 (687)
.|.+++|...+.+..+. .|+.. .|. .+...+. +.|...+....... ..+...+.. +-..|.+.|++++
T Consensus 182 ~~~~~~A~~~~~~al~~--~p~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~-l~~~~~~~~~~~~ 255 (388)
T d1w3ba_ 182 QGEIWLAIHHFEKAVTL--DPNFLDAYI--NLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGN-LACVYYEQGLIDL 255 (388)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHH--HHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHH-HHHHHHHTTCHHH
T ss_pred cCcHHHHHHHHHHHHHh--CcccHHHHH--HHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHH-HHHHHHHCCCHHH
Confidence 67777777777666553 24432 222 1111111 22222222222211 122334444 6678889999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 371 GFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 371 A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
|.+.|++..+.. +-+..+|..+...+...|++++|.+.++..... .+.+...+..+...+.+.|++++|.+.|++..+
T Consensus 256 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 333 (388)
T d1w3ba_ 256 AIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999987753 235678899999999999999999999987765 345667888888999999999999999999876
Q ss_pred CCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 451 HGVYP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 451 ~gv~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
. .| +...|..+-..|.+.|++++|...|++..+.
T Consensus 334 ~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 334 V--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp S--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred h--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 34 4667888889999999999999999988765
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=2.4e-07 Score=94.50 Aligned_cols=288 Identities=10% Similarity=-0.080 Sum_probs=186.1
Q ss_pred hhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Q 005628 161 EQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAA 240 (687)
Q Consensus 161 ~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~ 240 (687)
-+.|+.++|.+.|+.+.+.. |+ +...+..+-..|.+.|++++|+.+|++..+.. +-+..+|..+-..|.
T Consensus 10 ~~~G~~~~A~~~~~~~l~~~--p~-----~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~--- 78 (388)
T d1w3ba_ 10 YQAGDFEAAERHCMQLWRQE--PD-----NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYK--- 78 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TT-----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH---
T ss_pred HHcCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhh---
Confidence 36789999999999986542 21 34688888899999999999999999998753 235678888888888
Q ss_pred cCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCcc
Q 005628 241 VGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGH 320 (687)
Q Consensus 241 ~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ 320 (687)
+.|++++|...+. ..... ...+...+...... ....+....+.................
T Consensus 79 -------~~g~~~~A~~~~~-------~~~~~-~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (388)
T d1w3ba_ 79 -------ERGQLQEAIEHYR-------HALRL-KPDFIDGYINLAAA------LVAAGDMEGAVQAYVSALQYNPDLYCV 137 (388)
T ss_dssp -------HHTCHHHHHHHHH-------HHHHH-CTTCHHHHHHHHHH------HHHHSCSSHHHHHHHHHHHHCTTCTHH
T ss_pred -------hhccccccccccc-------ccccc-cccccccccccccc------ccccccccccccccccccccccccccc
Confidence 7899999999985 22221 11111111111111 222333333333333333322222211
Q ss_pred ccchhhHhhccc--cccCCCcchhcccCCCCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 005628 321 MKLNSQLLDGRS--NLERGPDDQSRKKDWSIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMA 397 (687)
Q Consensus 321 ty~~~~li~g~~--~~a~~~~~~m~~~g~~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~ 397 (687)
.+.......... ..+...+.... ...|+. ..+.. +...+...|..++|...+++..... +-+...|..+...+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 213 (388)
T d1w3ba_ 138 RSDLGNLLKALGRLEEAKACYLKAI--ETQPNFAVAWSN-LGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVL 213 (388)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH--HHCTTCHHHHHH-HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred cccccccccccchhhhhHHHHHHhh--ccCcchhHHHHh-hcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhh
Confidence 111000000000 00000111111 112333 23333 6677888899999999998877643 23567888888999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 005628 398 MSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVY 477 (687)
Q Consensus 398 ~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~ 477 (687)
...|++++|...++....... .+...|..+-..+.+.|+.++|.+.|+...+.. +-+...|..+...|...|++++|.
T Consensus 214 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~ 291 (388)
T d1w3ba_ 214 KEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAE 291 (388)
T ss_dssp HTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHH
T ss_pred hccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999998877642 455677778888899999999999999887753 224678888889999999999999
Q ss_pred HHHHHHHhc
Q 005628 478 YLLHKLRTS 486 (687)
Q Consensus 478 ~ll~~M~~~ 486 (687)
..++.....
T Consensus 292 ~~~~~~~~~ 300 (388)
T d1w3ba_ 292 DCYNTALRL 300 (388)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhhhcc
Confidence 999988776
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2e-06 Score=86.58 Aligned_cols=240 Identities=10% Similarity=0.012 Sum_probs=171.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCcc
Q 005628 200 MCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNG 279 (687)
Q Consensus 200 ~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~ 279 (687)
.+.+.|++++|+..|+++.+.. +-+...|..+-..|. ..|+.++|...|. +.... .-.+..
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~----------~~~~~~~A~~~~~-------~al~~-~p~~~~ 88 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQA----------ENEQELLAISALR-------RCLEL-KPDNQT 88 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH----------HTTCHHHHHHHHH-------HHHHH-CTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH----------HcCChHHHHHHHH-------hhhcc-cccccc
Confidence 4678999999999999998753 224678888888888 7899999999995 22221 111444
Q ss_pred chhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHH
Q 005628 280 QLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRL 359 (687)
Q Consensus 280 tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI 359 (687)
.|..+... +...|++++|.+.+.+.... .|+...... ........ .+...+.. .+
T Consensus 89 ~~~~la~~------~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~-~~~~~~~~---------------~~~~~~~~-~~ 143 (323)
T d1fcha_ 89 ALMALAVS------FTNESLQRQACEILRDWLRY--TPAYAHLVT-PAEEGAGG---------------AGLGPSKR-IL 143 (323)
T ss_dssp HHHHHHHH------HHHTTCHHHHHHHHHHHHHT--STTTGGGCC-------------------------------C-TT
T ss_pred cccccccc------ccccccccccccchhhHHHh--ccchHHHHH-hhhhhhhh---------------cccccchh-hH
Confidence 57777777 89999999999999988764 343322210 00000000 00000001 22
Q ss_pred HHHHhhccHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCCh
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDE-VPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDV 438 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~g-i~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~ 438 (687)
..+.+.+...+|.+.|.+..... -.++..++..+-..+...|++++|...|+...... +-+...|..+-..|.+.|++
T Consensus 144 ~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~ 222 (323)
T d1fcha_ 144 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 222 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccc
Confidence 34456677888999998876533 23567888999999999999999999999987652 12456788888899999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 439 DKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
++|.+.|+...+.. +-+...|..|-.+|.+.|++++|+..|++-.+
T Consensus 223 ~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 223 EEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999988753 22467788999999999999999999998765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=3.1e-05 Score=77.43 Aligned_cols=256 Identities=11% Similarity=-0.060 Sum_probs=170.1
Q ss_pred HhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 005628 160 MEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSA 239 (687)
Q Consensus 160 ~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~ 239 (687)
.-+.|+.++|.+.|+...+.. | -+...|..+-..+...|++++|+..|++..+.. +-+...|..+...|.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~--P-----~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~-- 98 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQD--P-----KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT-- 98 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccc--
Confidence 457899999999999986531 1 135789999999999999999999999988653 224667777778888
Q ss_pred ccCCcccCCCCchhhhhhhhhhccccccccccc-CCCCCccc-------hhccccccccccccccCCChhhHHHHHHHHH
Q 005628 240 AVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS-RDMDNNGQ-------LDYGSSPMIDKLESNSSYRFDDLDSTFNEKE 311 (687)
Q Consensus 240 ~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~-~g~~d~~t-------yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~ 311 (687)
..|+.++|.+.+. +.... ........ +..+-........+...+.+.+|...|.+..
T Consensus 99 --------~~~~~~~A~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 99 --------NESLQRQACEILR-------DWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp --------HTTCHHHHHHHHH-------HHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred --------ccccccccccchh-------hHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 7899999999885 22211 00000000 0000000000111233345566666665544
Q ss_pred hcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHH
Q 005628 312 NLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLT 391 (687)
Q Consensus 312 ~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn 391 (687)
.. .|+. ++...+.. +-..+...|++++|...|++..... +-+..+|.
T Consensus 164 ~~--~p~~-----------------------------~~~~~~~~-l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 210 (323)
T d1fcha_ 164 RL--DPTS-----------------------------IDPDVQCG-LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWN 210 (323)
T ss_dssp HH--STTS-----------------------------CCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HH--hhcc-----------------------------cccccchh-hHHHHHHHHHHhhhhcccccccccc-cccccchh
Confidence 32 1221 12233444 6677888999999999999987653 23577899
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCChHHHHHHHHHHHHC----------CCCCCHHHH
Q 005628 392 AVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGDVDKACSVEEHMLEH----------GVYPEEPEL 460 (687)
Q Consensus 392 ~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~----------gv~pd~~ty 460 (687)
.+-..|.+.|++++|.+.|+...+. .|+ ..+|..+-..|.+.|+.++|.+.|++.++. ........|
T Consensus 211 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~ 288 (323)
T d1fcha_ 211 KLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIW 288 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHH
T ss_pred hhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHH
Confidence 9999999999999999999998765 343 567888999999999999999999987652 112223345
Q ss_pred HHHHHHHHhcCChHH
Q 005628 461 EALLRVSVEAGKGDR 475 (687)
Q Consensus 461 ~~Li~~~~~~g~~~~ 475 (687)
..|=.++...|+.+.
T Consensus 289 ~~l~~al~~~~~~d~ 303 (323)
T d1fcha_ 289 STLRLALSMLGQSDA 303 (323)
T ss_dssp HHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHcCCHHH
Confidence 555555555555543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.99 E-value=0.00037 Score=69.41 Aligned_cols=127 Identities=12% Similarity=0.073 Sum_probs=98.9
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGR-MAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~-~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g 436 (687)
.+..+.+.|.+++|.++|+...+.+.. +...|-.... -+...|+.+.|..+|+.+... ..-+...|...++.+.+.|
T Consensus 140 ~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g 217 (308)
T d2onda1 140 YMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcC
Confidence 667777889999999999998876543 2333333333 234468999999999998876 3335577889999999999
Q ss_pred ChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHG-VYPE--EPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~g-v~pd--~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+++.|..+|+...... ..|+ ...|...+..-...|+.+.+..+.+++.+.
T Consensus 218 ~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 218 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999987764 4443 568999999888999999999999988776
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=0.0013 Score=64.76 Aligned_cols=276 Identities=9% Similarity=-0.028 Sum_probs=175.1
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGI-KLG----QYHYNVLL 233 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi-~pd----~~tyn~Ll 233 (687)
.....|+.++|.++++.-.+.. |+.........++.+-..+...|++++|+..|++.....- .++ ...+..+.
T Consensus 21 ~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 21 VAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 4557899999999999875431 2211111135677788899999999999999998874311 122 22344444
Q ss_pred HHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCC----CccchhccccccccccccccCCChhhHHHHHHH
Q 005628 234 YLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMD----NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNE 309 (687)
Q Consensus 234 ~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~----d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~e 309 (687)
..+. ..|+...+...+... .++....... ....+..+-.. +...|+++.|...+..
T Consensus 99 ~~~~----------~~~~~~~a~~~~~~a----l~~~~~~~~~~~~~~~~~~~~la~~------~~~~~~~~~a~~~~~~ 158 (366)
T d1hz4a_ 99 EILF----------AQGFLQTAWETQEKA----FQLINEQHLEQLPMHEFLVRIRAQL------LWAWARLDEAEASARS 158 (366)
T ss_dssp HHHH----------HTTCHHHHHHHHHHH----HHHHHHTTCTTSTHHHHHHHHHHHH------HHHTTCHHHHHHHHHH
T ss_pred HHHH----------HHHHHHHHHHHHHHH----HHHhHhcccchhhHHHHHHHHHHHH------HHHhcchhhhHHHHHH
Confidence 4455 678888888777411 1111111111 11123334444 7788999999999988
Q ss_pred HHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CCCC
Q 005628 310 KENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPM 385 (687)
Q Consensus 310 M~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~p 385 (687)
.....-..+... ....+.. +...+...+...++...+.+.... +..+
T Consensus 159 ~~~~~~~~~~~~----------------------------~~~~~~~-~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~ 209 (366)
T d1hz4a_ 159 GIEVLSSYQPQQ----------------------------QLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNGKYHS 209 (366)
T ss_dssp HHHHTTTSCGGG----------------------------GHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCH
T ss_pred HHHHhhhhhhhh----------------------------HHHHHHH-HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccC
Confidence 776432211111 1112222 445667778888888887765531 2111
Q ss_pred --CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC---CCcchHHHHHHHHHhCCChHHHHHHHHHHHH----CCCCCC
Q 005628 386 --NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGIN---PRLRSYGPALSVFCNNGDVDKACSVEEHMLE----HGVYPE 456 (687)
Q Consensus 386 --d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~---Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~----~gv~pd 456 (687)
....+..+...+...|++++|...+......... .....+..+-..+...|+.++|...++.... .+..|+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 289 (366)
T d1hz4a_ 210 DWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD 289 (366)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred chHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence 1335666777888899999999998875543211 1224456677889999999999999988753 355454
Q ss_pred -HHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 457 -EPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 457 -~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
...|..+-..|.+.|++++|.+.|++-..
T Consensus 290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677777889999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.47 E-value=0.00067 Score=67.42 Aligned_cols=127 Identities=13% Similarity=0.045 Sum_probs=101.1
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHH-HHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALS-VFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~-~~~~~g 436 (687)
.+..+-+.|.+++|..+|+++...........|...+..+.+.|+++.|.++|+...+.+- .+...|-.... -+...|
T Consensus 105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~-~~~~~~~~~a~~e~~~~~ 183 (308)
T d2onda1 105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcc
Confidence 5567778899999999999998754444456899999999999999999999999876632 23333333322 234468
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.+.|..+|+.+.+. ..-+...|...++.+.+.|++++|..+|++-...
T Consensus 184 ~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 184 DKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 999999999999886 3446788999999999999999999999998776
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.16 E-value=0.015 Score=57.66 Aligned_cols=231 Identities=7% Similarity=-0.028 Sum_probs=152.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcccCCcccCCCC-chhhhhhhhhhcccccccc
Q 005628 192 FQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQY-HYNVLLYLCSSAAVGVVKPAKSG-SGMRTLDTFEVSTMNSTEL 269 (687)
Q Consensus 192 ~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~-tyn~Ll~~~~~~~~~~~~~~k~g-~~~~A~~lf~~~~~~s~em 269 (687)
-.|+-+=..+.+.+..++|++++++++.. .|+-. .|+..-..+. ..| ++++|+..+. ..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~----------~l~~~~~eal~~~~-------~a 104 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLK----------SLQKDLHEEMNYIT-------AI 104 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH----------HTTCCHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHH----------HhCcCHHHHHHHHH-------HH
Confidence 45555556677889999999999999985 45544 5666666666 444 5889988885 22
Q ss_pred cccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCC
Q 005628 270 GDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSI 349 (687)
Q Consensus 270 ~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~p 349 (687)
... .-.+...|+.+-.. +.+.|++++|...|..+.+.. |+
T Consensus 105 l~~-~p~~~~a~~~~~~~------~~~l~~~~eAl~~~~kal~~d--p~------------------------------- 144 (315)
T d2h6fa1 105 IEE-QPKNYQVWHHRRVL------VEWLRDPSQELEFIADILNQD--AK------------------------------- 144 (315)
T ss_dssp HHH-CTTCHHHHHHHHHH------HHHHTCCTTHHHHHHHHHHHC--TT-------------------------------
T ss_pred HHH-HHhhhhHHHHHhHH------HHhhccHHHHHHHHhhhhhhh--hc-------------------------------
Confidence 221 11245557777666 788899999999999887642 22
Q ss_pred ChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCC------hHHHHHHHHHHHHcCCCC-Cc
Q 005628 350 DNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGD------GDMAFDMVKRMKSLGINP-RL 422 (687)
Q Consensus 350 d~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~------~~~A~~l~~~M~~~g~~P-d~ 422 (687)
+...|+. +-..+.+.|++++|.+.|+++.+.. +-+...|+.+-..+.+.+. +++|++.+....+. .| |.
T Consensus 145 n~~a~~~-~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~ 220 (315)
T d2h6fa1 145 NYHAWQH-RQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNE 220 (315)
T ss_dssp CHHHHHH-HHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCH
T ss_pred chHHHHH-HHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCch
Confidence 2334555 7777888899999999999998754 2366778877666666665 56788888776654 34 44
Q ss_pred chHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhc--C-------ChHHHHHHHHHHHhc
Q 005628 423 RSYGPALSVFCNNGDVDKACSVEEHMLEHGVY-PEEPELEALLRVSVEA--G-------KGDRVYYLLHKLRTS 486 (687)
Q Consensus 423 ~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~-pd~~ty~~Li~~~~~~--g-------~~~~A~~ll~~M~~~ 486 (687)
..|+-+-. +......+++.+.++...+.... .+...+..+...|... + .+++|..++..+...
T Consensus 221 ~~~~~l~~-ll~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~ 293 (315)
T d2h6fa1 221 SAWNYLKG-ILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 293 (315)
T ss_dssp HHHHHHHH-HHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-HHHhcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 55555544 34555567788888777654332 2456677777777543 2 234555666555544
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=0.021 Score=55.46 Aligned_cols=235 Identities=14% Similarity=-0.009 Sum_probs=154.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhccccccccccc
Q 005628 199 DMCSKRGDVMGAIRLYDKAQREGIKLG------QYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDS 272 (687)
Q Consensus 199 ~~~~k~g~~~~A~~lf~~M~~~Gi~pd------~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~ 272 (687)
..+...|++++|+++|++.... .|+ ...++.+-..|. ..|++++|...|... .++...
T Consensus 20 ~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~~~~~a~~~lg~~~~----------~~g~~~~A~~~~~~a----~~~~~~ 83 (366)
T d1hz4a_ 20 QVAINDGNPDEAERLAKLALEE--LPPGWFYSRIVATSVLGEVLH----------CKGELTRSLALMQQT----EQMARQ 83 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHT--CCTTCHHHHHHHHHHHHHHHH----------HHTCHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhh--CcCCCcHHHHHHHHHHHHHHH----------HCCCHHHHHHHHHHH----HHHHHh
Confidence 4467889999999999998764 232 234555556666 789999999998511 111111
Q ss_pred CCCC--CccchhccccccccccccccCCChhhHHHHHHHHHhcC---CCCCccccchhhHhhccccccCCCcchhcccCC
Q 005628 273 RDMD--NNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLG---QFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDW 347 (687)
Q Consensus 273 ~g~~--d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g---~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~ 347 (687)
.+.. ....+..+... +...|++..|...+.+..... ..+..
T Consensus 84 ~~~~~~~~~~~~~~~~~------~~~~~~~~~a~~~~~~al~~~~~~~~~~~---------------------------- 129 (366)
T d1hz4a_ 84 HDVWHYALWSLIQQSEI------LFAQGFLQTAWETQEKAFQLINEQHLEQL---------------------------- 129 (366)
T ss_dssp TTCHHHHHHHHHHHHHH------HHHTTCHHHHHHHHHHHHHHHHHTTCTTS----------------------------
T ss_pred hcchHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhHhcccchh----------------------------
Confidence 1111 11224444445 778899999998887654321 00000
Q ss_pred CCCh-hhhHHHHHHHHHhhccHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC
Q 005628 348 SIDN-QDADEIRLSEDAKKYAFQRGFEIYEKMCLD----EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSL----GI 418 (687)
Q Consensus 348 ~pd~-~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~----gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~----g~ 418 (687)
+.. ..+.. +-..+...|+++.+...+...... +......++..+...+...++..++...+.+.... +-
T Consensus 130 -~~~~~~~~~-la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~ 207 (366)
T d1hz4a_ 130 -PMHEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 207 (366)
T ss_dssp -THHHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred -hHHHHHHHH-HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcc
Confidence 011 11222 456778889999999999888753 33344567777778888899999999888776543 11
Q ss_pred CC--CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 419 NP--RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVY---PEEPELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 419 ~P--d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~---pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
.+ ....+..+...+...|+.++|...++........ .....+..+-..+...|++++|...+++...
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 279 (366)
T d1hz4a_ 208 HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNE 279 (366)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11 1234566667788899999999999887654322 2345666788899999999999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.012 Score=51.80 Aligned_cols=90 Identities=12% Similarity=0.070 Sum_probs=67.3
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVD 439 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~ 439 (687)
+.|.+.|++++|...|++..+.. +-+...|..+-..|...|++++|...|+...+.. +-+...|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 45667888888888888877754 3466777888888888888888888888777652 223467777888888888888
Q ss_pred HHHHHHHHHHHC
Q 005628 440 KACSVEEHMLEH 451 (687)
Q Consensus 440 ~A~~l~~~M~~~ 451 (687)
+|.+.+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 888888887764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.65 E-value=0.02 Score=55.72 Aligned_cols=127 Identities=10% Similarity=-0.001 Sum_probs=82.1
Q ss_pred HHHHH-HhhccHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCc------chH
Q 005628 358 RLSED-AKKYAFQRGFEIYEKMCL----DEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRL------RSY 425 (687)
Q Consensus 358 lI~~~-~k~g~~~~A~~lf~~M~~----~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~------~ty 425 (687)
+...| ...|++++|.+.|++..+ .+-.+. ..+|..+...|.+.|++++|..+|++.......... ..|
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 33344 345899999999987653 222222 346788899999999999999999998765321111 113
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCChHHHHHHHHHHH
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEHGVY-PE---EPELEALLRVSVE--AGKGDRVYYLLHKLR 484 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~gv~-pd---~~ty~~Li~~~~~--~g~~~~A~~ll~~M~ 484 (687)
..++..+...|+.+.|...++...+.... ++ ......|+.++-. .+.+++|..-|+++.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 34445666789999999999988664321 12 2345667777654 345778877776544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.64 E-value=0.024 Score=51.69 Aligned_cols=126 Identities=12% Similarity=0.020 Sum_probs=99.1
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
.+...|++++|++.|.++ ..|+..+|..+=..|.+.|++++|.+.|++-.+.. +-+...|..+=.+|.+.|+.++
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHH
Confidence 456789999999999875 35788899999999999999999999999988753 2345678888888999999999
Q ss_pred HHHHHHHHHHC------------CCC--CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh
Q 005628 441 ACSVEEHMLEH------------GVY--PE-EPELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS 493 (687)
Q Consensus 441 A~~l~~~M~~~------------gv~--pd-~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~ 493 (687)
|.+.|+..... |+. ++ ..++..+-.++.+.|++++|.+.|.+.... .+.+.
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~--~~~~~ 154 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM--KSEPR 154 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCSGG
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcc
Confidence 99999987653 111 11 244555667889999999999999988776 44443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.54 E-value=0.022 Score=56.35 Aligned_cols=172 Identities=8% Similarity=-0.032 Sum_probs=125.6
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhc-cHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKY-AFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g-~~~~A~ 372 (687)
+.+.+..++|+.++++..+. .|+-.+ .|+. .-..+...| ++++|+
T Consensus 53 ~~~~e~~~~Al~~~~~ai~l--nP~~~~-------------------------------a~~~-r~~~l~~l~~~~~eal 98 (315)
T d2h6fa1 53 LQRDERSERAFKLTRDAIEL--NAANYT-------------------------------VWHF-RRVLLKSLQKDLHEEM 98 (315)
T ss_dssp HHHTCCCHHHHHHHHHHHHH--CTTCHH-------------------------------HHHH-HHHHHHHTTCCHHHHH
T ss_pred HHhCCchHHHHHHHHHHHHH--CCCChH-------------------------------HHHH-HHHHHHHhCcCHHHHH
Confidence 66788999999999988875 344432 2333 444455555 589999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 005628 373 EIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG 452 (687)
Q Consensus 373 ~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g 452 (687)
+.+++..+.. +-+..+|+.+-..+.+.|++++|++.++.+.+.. +-+...|+.+...+.+.|+.++|.+.|+.+.+..
T Consensus 99 ~~~~~al~~~-p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~ 176 (315)
T d2h6fa1 99 NYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED 176 (315)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-HhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC
Confidence 9999987653 2467899999999999999999999999998752 2357888999999999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHhcCC------hHHHHHHHHHHHhccCCCC-hhHHHHHHHHHcC
Q 005628 453 VYPEEPELEALLRVSVEAGK------GDRVYYLLHKLRTSVRKVS-PSTADVIAKWFNS 504 (687)
Q Consensus 453 v~pd~~ty~~Li~~~~~~g~------~~~A~~ll~~M~~~~~g~~-p~t~~~I~~~~~~ 504 (687)
. -+...|+.+-..+.+.+. +++|+..+.+.... .|. ++.|.-+..++..
T Consensus 177 p-~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~ 232 (315)
T d2h6fa1 177 V-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQD 232 (315)
T ss_dssp T-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTT
T ss_pred C-ccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHh
Confidence 2 256677766666666555 56888888887766 332 2244444444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.50 E-value=0.018 Score=47.80 Aligned_cols=88 Identities=13% Similarity=0.073 Sum_probs=51.7
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
.+.+.|++++|..+|++..+.. +-+...|..+-.+|.+.|++++|+..+....+.. +.+...|..+-.++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHH
Confidence 3455666666666666665532 2345556666666666666666666666665542 2344555566666666666666
Q ss_pred HHHHHHHHHH
Q 005628 441 ACSVEEHMLE 450 (687)
Q Consensus 441 A~~l~~~M~~ 450 (687)
|...|+...+
T Consensus 90 A~~~~~~a~~ 99 (117)
T d1elwa_ 90 AKRTYEEGLK 99 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 6666666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.09 Score=49.06 Aligned_cols=125 Identities=10% Similarity=-0.050 Sum_probs=95.3
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g 436 (687)
+=..|.+.|++++|.+.|++..... +-+..+|+.+-.+|.+.|++++|.+.|++..+. .|+ ..+|..+-..|...|
T Consensus 43 ~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g 119 (259)
T d1xnfa_ 43 RGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGG 119 (259)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHHHh
Confidence 4467888999999999999988743 236788999999999999999999999998875 343 557888888899999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.++|.+.|+...+.. +.+......+..++.+.+..+.+..+.......
T Consensus 120 ~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 120 RDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 9999999999988754 224444444445556666666666665555554
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.035 Score=45.91 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=78.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
..+.+.|++++|+.+|.+..+.. +-+...|..+=.+|.+.|+.++|...++...+.. +.+...|..+-.++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 45778899999999999988762 3355678888999999999999999999998864 457888999999999999999
Q ss_pred HHHHHHHHHHhc
Q 005628 475 RVYYLLHKLRTS 486 (687)
Q Consensus 475 ~A~~ll~~M~~~ 486 (687)
+|+..|++....
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999999876
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.27 E-value=0.019 Score=51.76 Aligned_cols=89 Identities=9% Similarity=0.011 Sum_probs=67.9
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHHHhCCC
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPR-LRSYGPALSVFCNNGD 437 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~~~~~~g~ 437 (687)
=+.|.+.|++++|...|.+..... +-+...|+.+-.+|.+.|++++|+..|+.... +.|+ ..+|..+-.+|.+.|+
T Consensus 11 Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~lg~~~~~l~~ 87 (201)
T d2c2la1 11 GNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQCQLEMES 87 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHHHHHHHHCCC
Confidence 356778888888888888877653 34677788888888888888888888887654 3454 4567778888888888
Q ss_pred hHHHHHHHHHHHH
Q 005628 438 VDKACSVEEHMLE 450 (687)
Q Consensus 438 ~~~A~~l~~~M~~ 450 (687)
+++|...|+...+
T Consensus 88 ~~~A~~~~~~al~ 100 (201)
T d2c2la1 88 YDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.23 E-value=0.01 Score=50.04 Aligned_cols=99 Identities=7% Similarity=-0.036 Sum_probs=63.5
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHcCCCCCc-chHHHHHHHHH
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDG---DMAFDMVKRMKSLGINPRL-RSYGPALSVFC 433 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~---~~A~~l~~~M~~~g~~Pd~-~ty~~lI~~~~ 433 (687)
|++.+...+++++|.+.|++....+ +.+..++..+-.++.+.++. ++|+.+|++.....-.|+. .+|..|=.+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 6667777777888888887777643 23566677777777665443 4577777776654433332 25555666777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 434 NNGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
+.|++++|.+.|+...+ +.|+-.-
T Consensus 84 ~~g~~~~A~~~~~~aL~--~~P~~~~ 107 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ--TEPQNNQ 107 (122)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred HHhhhHHHHHHHHHHHH--hCcCCHH
Confidence 77777777777777766 3455443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.23 E-value=0.033 Score=50.16 Aligned_cols=99 Identities=12% Similarity=-0.047 Sum_probs=82.0
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 005628 385 MNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEAL 463 (687)
Q Consensus 385 pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~L 463 (687)
|+...+.-.=..|.+.|++++|+..|.+..... +-+...|+.+-.+|.+.|++++|...|+...+ +.| +...|..+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~l 78 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFL 78 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHHH
Confidence 455555555678899999999999999877653 33556788889999999999999999999976 445 47789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhc
Q 005628 464 LRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 464 i~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
-.+|.+.|++++|+..|++....
T Consensus 79 g~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.04 Score=48.12 Aligned_cols=90 Identities=10% Similarity=-0.041 Sum_probs=77.7
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGD 474 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~ 474 (687)
..|.+.|++++|...|.+..+.. +-+...|..+-..|...|++++|...|+..++.. +-+...|..+..+|...|+++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHH
Confidence 36779999999999999988763 2355678888889999999999999999998764 335678999999999999999
Q ss_pred HHHHHHHHHHhc
Q 005628 475 RVYYLLHKLRTS 486 (687)
Q Consensus 475 ~A~~ll~~M~~~ 486 (687)
+|...+++....
T Consensus 96 eA~~~~~~a~~~ 107 (159)
T d1a17a_ 96 AALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999999887
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.80 E-value=0.021 Score=47.02 Aligned_cols=86 Identities=12% Similarity=0.103 Sum_probs=53.0
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
.+.+.|++++|...|++...... -+...|..+-..+.+.|++++|...|+...+.. +-+...|..+-..|...|+.++
T Consensus 25 ~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~ 102 (112)
T d1hxia_ 25 SMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANA 102 (112)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHhhhccccc-ccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHH
Confidence 45566777777777777665431 246666666667777777777777776655542 1234555666666666666666
Q ss_pred HHHHHHHH
Q 005628 441 ACSVEEHM 448 (687)
Q Consensus 441 A~~l~~~M 448 (687)
|.+.+++.
T Consensus 103 A~~~l~~~ 110 (112)
T d1hxia_ 103 ALASLRAW 110 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666653
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.79 E-value=0.043 Score=53.11 Aligned_cols=164 Identities=7% Similarity=-0.061 Sum_probs=111.1
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCC-hhhhHHHHHHHHHhhccHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSID-NQDADEIRLSEDAKKYAFQRGF 372 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd-~~tyn~~lI~~~~k~g~~~~A~ 372 (687)
|...+++++|...|.+..+.... .+-.++ ..+|+. +-..|.+.|++++|.
T Consensus 47 y~~~~~~~~A~~~y~kA~~~~~~----------------------------~~~~~~~a~~~~~-~g~~y~~~~~~~~A~ 97 (290)
T d1qqea_ 47 YRLRKELNLAGDSFLKAADYQKK----------------------------AGNEDEAGNTYVE-AYKCFKSGGNSVNAV 97 (290)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHH----------------------------TTCHHHHHHHHHH-HHHHHHHTTCHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHH----------------------------cCCCHHHHHHHHH-HHHHHHHhCCcHHHH
Confidence 77888999999999876642100 000011 134555 678888999999999
Q ss_pred HHHHHHHh----CCC-CCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHc----CCCC-CcchHHHHHHHHHhCCChHHH
Q 005628 373 EIYEKMCL----DEV-PMNEASLTAVGRMAMS-MGDGDMAFDMVKRMKSL----GINP-RLRSYGPALSVFCNNGDVDKA 441 (687)
Q Consensus 373 ~lf~~M~~----~gi-~pd~~tyn~LI~~~~~-~g~~~~A~~l~~~M~~~----g~~P-d~~ty~~lI~~~~~~g~~~~A 441 (687)
+.|++... .|- .....++..+...|-. .|++++|.+.+.+.... +-.+ -..+|..+...|.+.|++++|
T Consensus 98 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A 177 (290)
T d1qqea_ 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEA 177 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHH
Confidence 99987653 221 1124456666666644 69999999999876532 2222 135678889999999999999
Q ss_pred HHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEHGVYP-----EE-PELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~gv~p-----d~-~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.+.|+......... .. ..|..++..+...|+++.|...|++....
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 178 SDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999987653221 11 22334455667889999999999988766
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.62 E-value=0.03 Score=47.01 Aligned_cols=95 Identities=14% Similarity=-0.003 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC---hHHHHHHHHHHHHCCCCCCH-HHHHHHHHH
Q 005628 391 TAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD---VDKACSVEEHMLEHGVYPEE-PELEALLRV 466 (687)
Q Consensus 391 n~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~---~~~A~~l~~~M~~~gv~pd~-~ty~~Li~~ 466 (687)
..|++.+...+++++|.+.|+.....+ +.+..++..+-.++.+.++ .++|.+++++.....-.|+. ..|..|-.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467888889999999999999988763 2355777777777877554 55799999999876544443 367778889
Q ss_pred HHhcCChHHHHHHHHHHHhc
Q 005628 467 SVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 467 ~~~~g~~~~A~~ll~~M~~~ 486 (687)
|.+.|++++|...|++....
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999987
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.096 Score=47.36 Aligned_cols=124 Identities=7% Similarity=-0.047 Sum_probs=91.9
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
+...|+++.|.+.|.++. .| +..+|.. +=..|.+.|++++|.+
T Consensus 15 ~~~~~d~~~Al~~~~~i~----~~--------------------------------~~~~~~n-lG~~~~~~g~~~~A~~ 57 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAVQ----DP--------------------------------HSRICFN-IGCMYTILKNMTEAEK 57 (192)
T ss_dssp HHHTTCHHHHHHHHHTSS----SC--------------------------------CHHHHHH-HHHHHHHTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHhcC----CC--------------------------------CHHHHHH-HHHHHHHcCCchhHHH
Confidence 567889999998886431 12 2233445 6678899999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC------------CCCCc---chHHHHHHHHHhCCCh
Q 005628 374 IYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLG------------INPRL---RSYGPALSVFCNNGDV 438 (687)
Q Consensus 374 lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g------------~~Pd~---~ty~~lI~~~~~~g~~ 438 (687)
.|++-.+.. +-+...|+.+-.+|.+.|++++|...|+.-.... +.... .++..+-.++.+.|++
T Consensus 58 ~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~ 136 (192)
T d1hh8a_ 58 AFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEW 136 (192)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCH
Confidence 999998754 3467889999999999999999999999876431 11111 2344555678899999
Q ss_pred HHHHHHHHHHHHCCCCC
Q 005628 439 DKACSVEEHMLEHGVYP 455 (687)
Q Consensus 439 ~~A~~l~~~M~~~gv~p 455 (687)
++|.+.++...+....|
T Consensus 137 ~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 137 KKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhcCCCc
Confidence 99999999887755444
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=95.37 E-value=0.048 Score=44.72 Aligned_cols=87 Identities=11% Similarity=-0.021 Sum_probs=74.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGK 472 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~ 472 (687)
-..+.+.|++++|...|++..... | +...|..+-..+.+.|++++|...|+...+.. +-+...|..|-..|...|+
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 345778999999999999988763 5 46788888899999999999999999988753 3358888999999999999
Q ss_pred hHHHHHHHHHH
Q 005628 473 GDRVYYLLHKL 483 (687)
Q Consensus 473 ~~~A~~ll~~M 483 (687)
.++|.+.|++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=95.33 E-value=0.22 Score=46.22 Aligned_cols=117 Identities=12% Similarity=0.007 Sum_probs=92.1
Q ss_pred cHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCCChHHHH
Q 005628 367 AFQRGFEIYEKMCLDEVPM---NEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNGDVDKAC 442 (687)
Q Consensus 367 ~~~~A~~lf~~M~~~gi~p---d~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g~~~~A~ 442 (687)
+.+.|+.-+++....-... ...+|..+=..|.+.|++++|.+.|++.... .| +..+|+.+=.+|.+.|++++|.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI--RPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--CCCCHHHHhhhchHHHHHHHHHHhh
Confidence 4566777777776543222 2245666667888999999999999998865 34 4578888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 443 SVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 443 ~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.|++..+..- -+...|..+-..|...|++++|...|++....
T Consensus 92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~ 134 (259)
T d1xnfa_ 92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD 134 (259)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 99999988532 24567888889999999999999999998876
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.19 E-value=0.093 Score=47.05 Aligned_cols=108 Identities=7% Similarity=0.005 Sum_probs=64.0
Q ss_pred HHHHhhccHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCC
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLD--EVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGD 437 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~--gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~ 437 (687)
......|++++|.+.|.+-..- |.... .....+-+...-..+... ....+..+...+.+.|+
T Consensus 19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~ 82 (179)
T d2ff4a2 19 VHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR 82 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence 4567889999999999988763 32110 000111111111111111 23445666777777777
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 005628 438 VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLR 484 (687)
Q Consensus 438 ~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~ 484 (687)
.++|...++.+.+.. .-+...|..|+.+|.+.|+..+|++.|+++.
T Consensus 83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~ 128 (179)
T d2ff4a2 83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVK 128 (179)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 777777777776643 2366677777777777777777777777664
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.98 E-value=0.33 Score=43.20 Aligned_cols=70 Identities=10% Similarity=0.095 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH
Q 005628 389 SLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLE-----HGVYPEEPE 459 (687)
Q Consensus 389 tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~-----~gv~pd~~t 459 (687)
.+..+...+.+.|++++|...++.+.... .-+...|..++.+|.+.|+.++|.+.|+++.+ -|+.|...+
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 45666777777778888777777776652 23556777777778888888887777777633 477776554
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=94.91 E-value=0.18 Score=43.55 Aligned_cols=102 Identities=17% Similarity=0.011 Sum_probs=67.8
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhC
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEV----PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNN 435 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi----~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~ 435 (687)
+.+.+.|++.+|...|.+....-. .++.... ..... ....+|+.+-.+|.+.
T Consensus 25 ~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~-----------------~~~~~-------~~~~~~~Nla~~~~~l 80 (153)
T d2fbna1 25 NEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL-----------------DKKKN-------IEISCNLNLATCYNKN 80 (153)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH-----------------HHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHH-----------------Hhhhh-------HHHHHHhhHHHHHHHh
Confidence 467788999999999988765210 1111111 00011 1224667777778888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 436 GDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 436 g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|+.++|.+.++..++.. +-+...|..+-.+|...|++++|...|++....
T Consensus 81 ~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 81 KDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888888888777653 336677888888888888888888888877766
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.11 Score=43.39 Aligned_cols=89 Identities=17% Similarity=0.247 Sum_probs=53.2
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-----cchHHHHHHHHH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGI-NPR-----LRSYGPALSVFC 433 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~-~Pd-----~~ty~~lI~~~~ 433 (687)
+.|.+.|++++|.+.|.+..+.. +.+...|..+-.+|.+.|++++|...++...+..- .++ ..+|..+=..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777776653 23566777777777777777777777777654310 011 123444444555
Q ss_pred hCCChHHHHHHHHHHH
Q 005628 434 NNGDVDKACSVEEHML 449 (687)
Q Consensus 434 ~~g~~~~A~~l~~~M~ 449 (687)
..+++++|.+.|+.-.
T Consensus 91 ~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 5556666666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.74 E-value=0.26 Score=43.29 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=53.4
Q ss_pred HHHHhhccHHHHHHHHHHHHhCCC-CCC-------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCLDEV-PMN-------------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~~gi-~pd-------------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
+.+.+.|++++|.+.|.+....-. .+. ..+|+.+-.+|.+.|++++|+..++...... +-+...|
T Consensus 21 ~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~ 99 (170)
T d1p5qa1 21 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGL 99 (170)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhh
Confidence 467889999999999987764210 110 2344445555666666666666666555432 1144555
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
..+-.+|...|++++|...|+...+
T Consensus 100 ~~~g~~~~~~g~~~~A~~~~~~al~ 124 (170)
T d1p5qa1 100 SRRGEAHLAVNDFELARADFQKVLQ 124 (170)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555566666666666666666555
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=94.71 E-value=0.32 Score=48.02 Aligned_cols=256 Identities=9% Similarity=0.027 Sum_probs=126.7
Q ss_pred HHhhhcCCCchhhhHHHhhhcCCCCCCCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 005628 159 KMEQRTNDSGQYKVRGITDEKGSKKSKKDRSEQFQLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSS 238 (687)
Q Consensus 159 ~~~~~~~~~~A~~v~~~M~~~g~~~~~g~~P~~~tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~ 238 (687)
.+.+.+..+.|..+|..+ .-|..++..+.+.+++..|.+++.... +..+|.-++.+|..
T Consensus 23 ~c~~~~lye~A~~lY~~~---------------~d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~ 81 (336)
T d1b89a_ 23 RCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVD 81 (336)
T ss_dssp ------CTTTHHHHHHHT---------------TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHhC---------------CCHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHh
Confidence 566889999999999998 668889999999999999988886542 56788888888883
Q ss_pred cccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhHHHHHHHHHhcCCCCC
Q 005628 239 AAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSN 318 (687)
Q Consensus 239 ~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd 318 (687)
.....-| .+.. .. ...+...-..++.. |-..|.+++...+++..... -.++
T Consensus 82 ----------~~e~~la-~i~~--------~~---~~~~~d~l~~~v~~------ye~~~~~e~Li~~Le~~~~~-~~~~ 132 (336)
T d1b89a_ 82 ----------GKEFRLA-QMCG--------LH---IVVHADELEELINY------YQDRGYFEELITMLEAALGL-ERAH 132 (336)
T ss_dssp ----------TTCHHHH-HHTT--------TT---TTTCHHHHHHHHHH------HHHTTCHHHHHHHHHHHTTS-TTCC
T ss_pred ----------CcHHHHH-HHHH--------HH---hhcCHHHHHHHHHH------HHHcCChHHHHHHHHHHHcC-Cccc
Confidence 2222111 1110 00 00011112334555 77778888888888765432 1233
Q ss_pred ccccchhhHhhcccccc-CCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCC--------CCCCHHH
Q 005628 319 GHMKLNSQLLDGRSNLE-RGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDE--------VPMNEAS 389 (687)
Q Consensus 319 ~~ty~~~~li~g~~~~a-~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~g--------i~pd~~t 389 (687)
...++ .++..+++-. ..+.+.+...+-.-|. .. ++..|-..+.+.++.-++..|.... -.+++.-
T Consensus 133 ~~~~~--~L~~lyak~~~~kl~e~l~~~s~~y~~---~k-~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~ 206 (336)
T d1b89a_ 133 MGMFT--ELAILYSKFKPQKMREHLELFWSRVNI---PK-VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWK 206 (336)
T ss_dssp HHHHH--HHHHHHHTTCHHHHHHHHHHHSTTSCH---HH-HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCC
T ss_pred hHHHH--HHHHHHHHhChHHHHHHHHhccccCCH---HH-HHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhh
Confidence 34444 5555555221 1122222221111111 01 3334444444444444444332110 1122222
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcc-----------hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 005628 390 LTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLR-----------SYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 390 yn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-----------ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (687)
....+..+.+..+++...+++...... .|+.. --.-+|.-+-+.+++......++...+.| +..
T Consensus 207 ~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~ 281 (336)
T d1b89a_ 207 EGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKS 281 (336)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHH
T ss_pred HHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHH
Confidence 333445556666666555555544332 23221 11233333444444444444444444434 345
Q ss_pred HHHHHHHHHHhcCChHH
Q 005628 459 ELEALLRVSVEAGKGDR 475 (687)
Q Consensus 459 ty~~Li~~~~~~g~~~~ 475 (687)
+.++|.+.|...++++.
T Consensus 282 vn~al~~lyie~~d~~~ 298 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQA 298 (336)
T ss_dssp HHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCcchhHH
Confidence 67777777777776543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.15 Score=42.51 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=79.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCC---CC--CC-HHHHHHHHHHHH
Q 005628 395 RMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHG---VY--PE-EPELEALLRVSV 468 (687)
Q Consensus 395 ~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~g---v~--pd-~~ty~~Li~~~~ 468 (687)
..|.+.|++++|+..|.+..+.+ +.+...|..+-.+|.+.|++++|...++.+++.. .. +. ..+|..+-..+.
T Consensus 12 ~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~~ 90 (128)
T d1elra_ 12 NDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYF 90 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHH
Confidence 46888999999999999988763 2457788889999999999999999999987531 11 11 257888889999
Q ss_pred hcCChHHHHHHHHHHHhccCCCChhHHHH
Q 005628 469 EAGKGDRVYYLLHKLRTSVRKVSPSTADV 497 (687)
Q Consensus 469 ~~g~~~~A~~ll~~M~~~~~g~~p~t~~~ 497 (687)
..+++++|...|++-... ...++....
T Consensus 91 ~~~~~~~A~~~~~kal~~--~~~~~~~~~ 117 (128)
T d1elra_ 91 KEEKYKDAIHFYNKSLAE--HRTPDVLKK 117 (128)
T ss_dssp HTTCHHHHHHHHHHHHHH--CCCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHhc--CCCHHHHHH
Confidence 999999999999987766 556664433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.25 Score=43.37 Aligned_cols=92 Identities=15% Similarity=0.005 Sum_probs=75.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcC-CCC-------------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 005628 394 GRMAMSMGDGDMAFDMVKRMKSLG-INP-------------RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPE 459 (687)
Q Consensus 394 I~~~~~~g~~~~A~~l~~~M~~~g-~~P-------------d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~t 459 (687)
=..+.+.|++++|...|.+....- ..+ ...+|+.+-.+|.+.|++++|...++..++.. +-+...
T Consensus 20 G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a 98 (170)
T d1p5qa1 20 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKG 98 (170)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhh
Confidence 346788999999999998876541 111 12457778888999999999999999998764 237888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 460 LEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 460 y~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
|..+-.+|...|++++|...|++....
T Consensus 99 ~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 99 LSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999887
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=93.70 E-value=0.048 Score=52.42 Aligned_cols=114 Identities=12% Similarity=0.060 Sum_probs=79.6
Q ss_pred HhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcch-HHHHHHHHHhCCChHHH
Q 005628 363 AKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRS-YGPALSVFCNNGDVDKA 441 (687)
Q Consensus 363 ~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~t-y~~lI~~~~~~g~~~~A 441 (687)
.+.|++++|.+.|++-.+.. +-|...+..|...||..|++++|...|+...+. .|+... +..+-..+. +
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~-------a 76 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK-------A 76 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH-------H
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHH-------h
Confidence 46799999999999998864 457899999999999999999999999998765 465433 222222222 2
Q ss_pred HHHHHHHHHC----CC--CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 442 CSVEEHMLEH----GV--YP-EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 442 ~~l~~~M~~~----gv--~p-d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
....+++... .+ .| +...+......+...|+.++|..++.+..+.
T Consensus 77 ~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 2233333221 11 12 2333444456678899999999999998876
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=93.70 E-value=0.92 Score=38.68 Aligned_cols=52 Identities=4% Similarity=-0.253 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhccCCCChh--HHHHHHHHHcCHHHHHhh
Q 005628 458 PELEALLRVSVEAGKGDRVYYLLHKLRTSVRKVSPS--TADVIAKWFNSKEAARLG 511 (687)
Q Consensus 458 ~ty~~Li~~~~~~g~~~~A~~ll~~M~~~~~g~~p~--t~~~I~~~~~~~~~~~a~ 511 (687)
.+|+-+-.+|.+.|++++|+..+++.... .|.-. -+..-..+...+...+|.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~--~p~~~ka~~~~g~~~~~lg~~~~A~ 121 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAK 121 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccc--cchhhhhhHHhHHHHHHcCCHHHHH
Confidence 47777888899999999999999988776 32222 344455555555555554
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.67 E-value=0.64 Score=45.03 Aligned_cols=239 Identities=7% Similarity=-0.094 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHH---HHHHHHhcccCCcccCCCCchhhhhhhhhhccccccc
Q 005628 193 QLRVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYH-YNV---LLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTE 268 (687)
Q Consensus 193 tyn~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~t-yn~---Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~e 268 (687)
.+..++...-+....++|+++++..... .|+..+ |+. ++..+...+ ..+...|++++|+..+. .
T Consensus 31 ~~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~---~~~~~~~~~~~al~~~~-------~ 98 (334)
T d1dcea1 31 ATQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEK---SPEESAALVKAELGFLE-------S 98 (334)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTS---CHHHHHHHHHHHHHHHH-------H
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhc---chHHHHHHHHHHHHHHH-------H
Confidence 3444444444444458999999999864 466543 332 222222100 00113345677777774 2
Q ss_pred ccccCCCCCccchhcccccccccccccc--CCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccC
Q 005628 269 LGDSRDMDNNGQLDYGSSPMIDKLESNS--SYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKD 346 (687)
Q Consensus 269 m~~~~g~~d~~tyn~Li~~~~~~~~~~~--~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g 346 (687)
.... .-.+...|..+-.+ +.. .+++++|...+.+..+.. |+..
T Consensus 99 ~l~~-~pk~~~~~~~~~~~------~~~~~~~~~~~a~~~~~~al~~~--~~~~-------------------------- 143 (334)
T d1dcea1 99 CLRV-NPKSYGTWHHRCWL------LSRLPEPNWARELELCARFLEAD--ERNF-------------------------- 143 (334)
T ss_dssp HHHH-CTTCHHHHHHHHHH------HHTCSSCCHHHHHHHHHHHHHHC--TTCH--------------------------
T ss_pred HHHh-CCCcHHHHHHhhHH------HHHhccccHHHHHHHHHHHHhhC--chhh--------------------------
Confidence 2221 11133345544433 333 345788998888877652 2211
Q ss_pred CCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHH---------------------
Q 005628 347 WSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDM--------------------- 405 (687)
Q Consensus 347 ~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~--------------------- 405 (687)
..+...+-..+-..+..++|++.+++...... -|...|+.+-..+.+.|++++
T Consensus 144 -----~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 217 (334)
T d1dcea1 144 -----HCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 217 (334)
T ss_dssp -----HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHH
T ss_pred -----hhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHHHHHHH
Confidence 11111122344556677777777777666542 355666666666666655543
Q ss_pred ---------HHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 005628 406 ---------AFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRV 476 (687)
Q Consensus 406 ---------A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A 476 (687)
+...+...... -.++...+..+...+...|+.++|...+.+...... -+...|..+-..|...|+.++|
T Consensus 218 ~~~l~~~~~a~~~~~~~l~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA 295 (334)
T d1dcea1 218 AFFTDPNDQSAWFYHRWLLG-RAEPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKET 295 (334)
T ss_dssp HHHHCSSCSHHHHHHHHHHS-CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHH
T ss_pred HHHhcchhHHHHHHHHHHHh-CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHH
Confidence 33333332222 223445556666777778888999998887754431 1456677788888999999999
Q ss_pred HHHHHHHHhc
Q 005628 477 YYLLHKLRTS 486 (687)
Q Consensus 477 ~~ll~~M~~~ 486 (687)
.+.+++..+.
T Consensus 296 ~~~~~~ai~l 305 (334)
T d1dcea1 296 LQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998876
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.71 E-value=0.38 Score=41.94 Aligned_cols=107 Identities=12% Similarity=-0.062 Sum_probs=58.7
Q ss_pred HHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CcchHHHHHHHHHhCC
Q 005628 358 RLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINP-RLRSYGPALSVFCNNG 436 (687)
Q Consensus 358 lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~P-d~~ty~~lI~~~~~~g 436 (687)
.-..+.+.|++++|++.|.+.... +..........+.. -+.| +...|..+-.++.+.|
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~---------~~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA---------KLQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG---------GGHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH---------HhChhhHHHHHHHHHHHHhhc
Confidence 345677889999999988876431 00000000000000 0111 2334555555666666
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 437 DVDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 437 ~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+.++|...++..++.. +-+...|..+-.+|.+.|++++|...|++..+.
T Consensus 92 ~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 92 DWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6666666666666543 224556666666666666666666666666655
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=92.07 E-value=2.5 Score=36.33 Aligned_cols=91 Identities=12% Similarity=0.035 Sum_probs=60.2
Q ss_pred HHHHhhccHHHHHHHHHHHHh---CCCCCC-----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchH
Q 005628 360 SEDAKKYAFQRGFEIYEKMCL---DEVPMN-----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSY 425 (687)
Q Consensus 360 ~~~~k~g~~~~A~~lf~~M~~---~gi~pd-----------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 425 (687)
..+.+.|++++|...|.+... ....++ ..+|+.+-.+|.+.|++++|+..++...... +.+..+|
T Consensus 23 ~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~ 101 (168)
T d1kt1a1 23 TVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGL 101 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHH
Confidence 567889999999999977553 111111 1334445556677777777777777766542 3355666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 426 GPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 426 ~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
..+-.++...|++++|.+.|+...+.
T Consensus 102 ~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 102 YRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66777777777777777777777653
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.03 E-value=0.02 Score=56.72 Aligned_cols=103 Identities=6% Similarity=-0.131 Sum_probs=65.0
Q ss_pred HHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHH
Q 005628 361 EDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDK 440 (687)
Q Consensus 361 ~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~ 440 (687)
.+...+..+++...+....... +++...+..+...+...|+.++|...+.+..... +-+...|..+-..|.+.|+.++
T Consensus 217 ~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~e 294 (334)
T d1dcea1 217 NAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKE 294 (334)
T ss_dssp HHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHH
T ss_pred HHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHH
Confidence 3444555566777666665543 3445556667777777788888888877655432 1244566667777888888888
Q ss_pred HHHHHHHHHHCCCCCCH-HHHHHHHHHH
Q 005628 441 ACSVEEHMLEHGVYPEE-PELEALLRVS 467 (687)
Q Consensus 441 A~~l~~~M~~~gv~pd~-~ty~~Li~~~ 467 (687)
|.+.|+...+. .|+. .-|..|-..+
T Consensus 295 A~~~~~~ai~l--dP~~~~y~~~L~~~~ 320 (334)
T d1dcea1 295 TLQYFSTLKAV--DPMRAAYLDDLRSKF 320 (334)
T ss_dssp HHHHHHHHHHH--CGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--CcccHHHHHHHHHHH
Confidence 88888887763 4543 3444444333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=91.49 E-value=1.5 Score=37.25 Aligned_cols=90 Identities=13% Similarity=0.102 Sum_probs=55.7
Q ss_pred HHHHcCChHHHHHHHHHHHHcC-CCCC----------cchHHHHHHHHHhCCChHHHHHHHHHHHHC-----CCCCCH--
Q 005628 396 MAMSMGDGDMAFDMVKRMKSLG-INPR----------LRSYGPALSVFCNNGDVDKACSVEEHMLEH-----GVYPEE-- 457 (687)
Q Consensus 396 ~~~~~g~~~~A~~l~~~M~~~g-~~Pd----------~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~-----gv~pd~-- 457 (687)
.+...|++++|+..|++-.... -.|+ ...|+.+-.+|.+.|++++|.+-+++..+. ...++.
T Consensus 18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~ 97 (156)
T d2hr2a1 18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 97 (156)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence 3445566777777666655321 1122 245667777777778887777777766532 122221
Q ss_pred ---HHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 005628 458 ---PELEALLRVSVEAGKGDRVYYLLHKLRT 485 (687)
Q Consensus 458 ---~ty~~Li~~~~~~g~~~~A~~ll~~M~~ 485 (687)
..|+.+-.+|...|++++|+..|++..+
T Consensus 98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455667788888888888888887554
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.00 E-value=1.3 Score=38.17 Aligned_cols=96 Identities=8% Similarity=0.001 Sum_probs=55.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYP-EEPELEALLRVSVEAG 471 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~p-d~~ty~~Li~~~~~~g 471 (687)
.-..+.+.|++++|++.|.+.... +.............. +.| +...|..+-.+|.+.|
T Consensus 33 ~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~~---------~~~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 33 IGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGAK---------LQPVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHGG---------GHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHHH---------hChhhHHHHHHHHHHHHhhc
Confidence 344567788999998888775431 000001111111111 111 3456677778889999
Q ss_pred ChHHHHHHHHHHHhccCCCC-hhH-HHHHHHHHcCHHHHHhh
Q 005628 472 KGDRVYYLLHKLRTSVRKVS-PST-ADVIAKWFNSKEAARLG 511 (687)
Q Consensus 472 ~~~~A~~ll~~M~~~~~g~~-p~t-~~~I~~~~~~~~~~~a~ 511 (687)
++++|+..+.+..+. .+. +.. +..-..+...+...+|.
T Consensus 92 ~~~~Ai~~~~~al~~--~p~~~~a~~~~g~~~~~l~~~~~A~ 131 (169)
T d1ihga1 92 DWQGAVDSCLEALEI--DPSNTKALYRRAQGWQGLKEYDQAL 131 (169)
T ss_dssp CHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ccchhhhhhhhhhhh--hhhhhhHHHhHHHHHHHccCHHHHH
Confidence 999999999998876 222 223 34455666666666555
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=89.89 E-value=1.6 Score=37.01 Aligned_cols=92 Identities=7% Similarity=-0.033 Sum_probs=69.1
Q ss_pred HHHHHhhccHHHHHHHHHHHHhCC-CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CCCCC-
Q 005628 359 LSEDAKKYAFQRGFEIYEKMCLDE-VPMN----------EASLTAVGRMAMSMGDGDMAFDMVKRMKSL-----GINPR- 421 (687)
Q Consensus 359 I~~~~k~g~~~~A~~lf~~M~~~g-i~pd----------~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~-----g~~Pd- 421 (687)
-..+.+.|++++|++.|++-.+.. -.|+ ...|+.+-.+|.+.|++++|..-+.+.... ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 355667899999999999887521 1122 468999999999999999999998887642 12222
Q ss_pred ----cchHHHHHHHHHhCCChHHHHHHHHHHHH
Q 005628 422 ----LRSYGPALSVFCNNGDVDKACSVEEHMLE 450 (687)
Q Consensus 422 ----~~ty~~lI~~~~~~g~~~~A~~l~~~M~~ 450 (687)
...|+.+=.+|...|+.++|.+.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 12466677889999999999999998653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=88.60 E-value=3 Score=35.71 Aligned_cols=93 Identities=12% Similarity=-0.011 Sum_probs=73.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc-CCCC-------------CcchHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 005628 393 VGRMAMSMGDGDMAFDMVKRMKSL-GINP-------------RLRSYGPALSVFCNNGDVDKACSVEEHMLEHGVYPEEP 458 (687)
Q Consensus 393 LI~~~~~~g~~~~A~~l~~~M~~~-g~~P-------------d~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~gv~pd~~ 458 (687)
.-..+.+.|++++|...|.+.... ...+ ....|+.+-.+|.+.|++++|...++...+.. +.+..
T Consensus 21 ~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~ 99 (168)
T d1kt1a1 21 KGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEK 99 (168)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHH
Confidence 345677899999999999875532 1111 11345666778899999999999999988763 45788
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 459 ELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 459 ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|..+-.+|...|++++|...|.+....
T Consensus 100 a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 100 GLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999876
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.40 E-value=1.6 Score=36.85 Aligned_cols=114 Identities=11% Similarity=0.082 Sum_probs=70.1
Q ss_pred HHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHc----------CChHHHHHHHHHHHHcCCCCC-cchHHHHHH
Q 005628 362 DAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMSM----------GDGDMAFDMVKRMKSLGINPR-LRSYGPALS 430 (687)
Q Consensus 362 ~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~~----------g~~~~A~~l~~~M~~~g~~Pd-~~ty~~lI~ 430 (687)
|-+.+.+++|.+.|+...+.. +-|..+|..+=.+|... +.+++|+..|++..+. .|+ ..+|..+=.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l--~P~~~~a~~~lG~ 83 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI--DPKKDEAVWCIGN 83 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh--cchhhHHHhhHHH
Confidence 446678999999999988754 34566676666666543 4456788888777654 343 356666655
Q ss_pred HHHhCCC-----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 431 VFCNNGD-----------VDKACSVEEHMLEHGVYPEEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 431 ~~~~~g~-----------~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
.|...|+ +++|.+.|+...+ +.|+..+|...+..+ .+|.+++.+..+.
T Consensus 84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~------~ka~~~~~e~~k~ 142 (145)
T d1zu2a1 84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT------AKAPQLHAEAYKQ 142 (145)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 6655432 4556666666554 456666665555443 3455555555554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.10 E-value=5.6 Score=38.55 Aligned_cols=214 Identities=6% Similarity=-0.091 Sum_probs=106.0
Q ss_pred CCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCCCCCccchhccccccccccccccCCChhhH
Q 005628 224 LGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRDMDNNGQLDYGSSPMIDKLESNSSYRFDDL 303 (687)
Q Consensus 224 pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g~~d~~tyn~Li~~~~~~~~~~~~g~~~~A 303 (687)
||..--..+.+-|- +.|.++.|..++. .+ --|.-++.. +.+.+++..|
T Consensus 12 ~n~~d~~~i~~~c~----------~~~lye~A~~lY~-------~~---------~d~~rl~~~------~v~l~~~~~a 59 (336)
T d1b89a_ 12 PNNAHIQQVGDRCY----------DEKMYDAAKLLYN-------NV---------SNFGRLAST------LVHLGEYQAA 59 (336)
T ss_dssp C--------------------------CTTTHHHHHH-------HT---------TCHHHHHHH------HHTTTCHHHH
T ss_pred CCcCCHHHHHHHHH----------HCCCHHHHHHHHH-------hC---------CCHHHHHHH------HHhhccHHHH
Confidence 44444445555555 7788888888884 11 124555555 7778888888
Q ss_pred HHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHHHHHHHHhCCC
Q 005628 304 DSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFEIYEKMCLDEV 383 (687)
Q Consensus 304 ~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi 383 (687)
.+++.... +.-+|. .+...+.+..+.-...+.......+...... ++..|-..|.+++...+++..... -
T Consensus 60 vd~~~k~~------~~~~~k--~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~-~v~~ye~~~~~e~Li~~Le~~~~~-~ 129 (336)
T d1b89a_ 60 VDGARKAN------STRTWK--EVCFACVDGKEFRLAQMCGLHIVVHADELEE-LINYYQDRGYFEELITMLEAALGL-E 129 (336)
T ss_dssp HHHHHHHT------CHHHHH--HHHHHHHHTTCHHHHHHTTTTTTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHTTS-T
T ss_pred HHHHHHcC------CHHHHH--HHHHHHHhCcHHHHHHHHHHHhhcCHHHHHH-HHHHHHHcCChHHHHHHHHHHHcC-C
Confidence 77775442 112332 2222222111111112222222223333334 778888899999999998876532 2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC--------CCCC
Q 005628 384 PMNEASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH--------GVYP 455 (687)
Q Consensus 384 ~pd~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~--------gv~p 455 (687)
.++...++-|+..|++.+. + ++.+.++... +..-..-++..|-+.+.++++.-++..+... .-.+
T Consensus 130 ~~~~~~~~~L~~lyak~~~-~---kl~e~l~~~s---~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~ 202 (336)
T d1b89a_ 130 RAHMGMFTELAILYSKFKP-Q---KMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT 202 (336)
T ss_dssp TCCHHHHHHHHHHHHTTCH-H---HHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred ccchHHHHHHHHHHHHhCh-H---HHHHHHHhcc---ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcch
Confidence 4677788999999988643 3 3444444321 1222333444555555555554444433111 0123
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q 005628 456 EEPELEALLRVSVEAGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 456 d~~ty~~Li~~~~~~g~~~~A~~ll~~M~~~ 486 (687)
+..-....+..+.+..+.+...+++....+.
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~ 233 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEF 233 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHc
Confidence 3333455666677777777766666655543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=85.92 E-value=0.36 Score=45.88 Aligned_cols=122 Identities=10% Similarity=-0.041 Sum_probs=75.4
Q ss_pred cccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChhhhHHHHHHHHHhhccHHHHHH
Q 005628 294 SNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQDADEIRLSEDAKKYAFQRGFE 373 (687)
Q Consensus 294 ~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~tyn~~lI~~~~k~g~~~~A~~ 373 (687)
.-+.|++++|...+++-.+.. |+. ...+.. +...||..|++++|.+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~--P~d-------------------------------~~ar~~-La~lL~~~G~~e~A~~ 51 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS--PKD-------------------------------ASLRSS-FIELLCIDGDFERADE 51 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC--TTC-------------------------------HHHHHH-HHHHHHHHTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC--CCC-------------------------------HHHHHH-HHHHHHHCCCHHHHHH
Confidence 456799999999999887652 332 233344 8899999999999999
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCcchHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 005628 374 IYEKMCLDEVPMN-EASLTAVGRMAMSMGDGDMAFDMVKRMKSLGINPRLRSYGPALSVFCNNGDVDKACSVEEHMLEH 451 (687)
Q Consensus 374 lf~~M~~~gi~pd-~~tyn~LI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty~~lI~~~~~~g~~~~A~~l~~~M~~~ 451 (687)
.|+...+. .|+ ...+..+...+...+..+++..-...-...+-.++...+......+.+.|+.++|.++++...+.
T Consensus 52 ~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 52 QLMQSIKL--FPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 99999874 344 33444443333322222222111100000011123344455566778889999999999988764
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| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
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class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=82.36 E-value=17 Score=32.65 Aligned_cols=228 Identities=12% Similarity=-0.023 Sum_probs=120.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccCCcccCCCCchhhhhhhhhhcccccccccccCC
Q 005628 195 RVELDMCSKRGDVMGAIRLYDKAQREGIKLGQYHYNVLLYLCSSAAVGVVKPAKSGSGMRTLDTFEVSTMNSTELGDSRD 274 (687)
Q Consensus 195 n~lI~~~~k~g~~~~A~~lf~~M~~~Gi~pd~~tyn~Ll~~~~~~~~~~~~~~k~g~~~~A~~lf~~~~~~s~em~~~~g 274 (687)
..|=..+-+.||+.+|++.|++..+.| |...+-.|=..|-... + ...+...|...+. .....+
T Consensus 6 ~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~-~-----~~~d~~~a~~~~~--------~a~~~~ 68 (265)
T d1ouva_ 6 VGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQ-G-----VEKNLKKAASFYA--------KACDLN 68 (265)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTS-S-----SCCCHHHHHHHHH--------HHHHTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC-C-----cchhHHHHHHhhc--------cccccc
Confidence 333344556799999999999998887 4444433433343211 0 2345666666663 111101
Q ss_pred CCCccc--hhccccccccccccccCCChhhHHHHHHHHHhcCCCCCccccchhhHhhccccccCCCcchhcccCCCCChh
Q 005628 275 MDNNGQ--LDYGSSPMIDKLESNSSYRFDDLDSTFNEKENLGQFSNGHMKLNSQLLDGRSNLERGPDDQSRKKDWSIDNQ 352 (687)
Q Consensus 275 ~~d~~t--yn~Li~~~~~~~~~~~~g~~~~A~~lf~eM~~~g~~Pd~~ty~~~~li~g~~~~a~~~~~~m~~~g~~pd~~ 352 (687)
...... -+....+ .......+.|...+..-...|..+......
T Consensus 69 ~~~a~~~l~~~~~~~------~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~----------------------------- 113 (265)
T d1ouva_ 69 YSNGCHLLGNLYYSG------QGVSQNTNKALQYYSKACDLKYAEGCASLG----------------------------- 113 (265)
T ss_dssp CHHHHHHHHHHHHHT------SSSCCCHHHHHHHHHHHHHTTCHHHHHHHH-----------------------------
T ss_pred ccchhhccccccccc------cccchhhHHHHHHHhhhhhhhhhhHHHhhc-----------------------------
Confidence 110000 0112222 344566777777777666554321111100
Q ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCcchHHHH
Q 005628 353 DADEIRLSEDAKKYAFQRGFEIYEKMCLDEVPMNEASLTAVGRMAMS----MGDGDMAFDMVKRMKSLGINPRLRSYGPA 428 (687)
Q Consensus 353 tyn~~lI~~~~k~g~~~~A~~lf~~M~~~gi~pd~~tyn~LI~~~~~----~g~~~~A~~l~~~M~~~g~~Pd~~ty~~l 428 (687)
.....+.........|...+.+.... .+...+..|...|.. ..+...+...++...+.|. ......|
T Consensus 114 ---~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~---~~A~~~l 184 (265)
T d1ouva_ 114 ---GIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKD---SPGCFNA 184 (265)
T ss_dssp ---HHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHH
T ss_pred ---ccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccccc---cccccch
Confidence 00111222233456666666665554 356667777776665 3455566666666666542 2222222
Q ss_pred HHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhc
Q 005628 429 LSVFCN----NGDVDKACSVEEHMLEHGVYPEEPELEALLRVSVE----AGKGDRVYYLLHKLRTS 486 (687)
Q Consensus 429 I~~~~~----~g~~~~A~~l~~~M~~~gv~pd~~ty~~Li~~~~~----~g~~~~A~~ll~~M~~~ 486 (687)
=..|.. ..+.++|...|....+.| +...+..|-..|.+ ..+.++|.+.|++-...
T Consensus 185 g~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 185 GNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp HHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred hhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 222222 467888999998888876 44455555555543 23677788888777666
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